HHsearch alignment of GI: 254780148 and MMDB domain: 1m1h_A_1-49_135-168
>1m1h_A (A:1-49,A:135-168) Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus}
Probab=99.85 E-value=9.6e-22 Score=149.81 Aligned_cols=75 Identities=40% Similarity=0.674 Sum_probs=71.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf 98861899952885389999999999977981114326631310127720203566412033099999961865224442
Q gi|254780148|r 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK 80 (177)
Q Consensus 1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~ 80 (177)
|.++|||+||.||+|+||+++|++++...++++++++|++| |||||||++++++++|+.|+
T Consensus 9 ~~~kWYvi~t~SG~E~KVk~~le~~i~~~~l~d~v~~V~VP-------------------FPGYvfV~m~l~d~~w~~Ir 69 (83)
T 1m1h_A 9 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVP-------------------FPGYILIKAHMNDKLLMAIE 69 (83)
T ss_dssp CCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECS-------------------STTEEEEEECCCHHHHHHHH
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECC-------------------CCCEEEEEEECCCHHHHHHH
T ss_conf 05866999825695899999999999877960213089803-------------------88479999872720788874
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 03303664327886
Q gi|254780148|r 81 DTPKVIGFLGTGEN 94 (177)
Q Consensus 81 ~t~gV~~~l~~~~~ 94 (177)
+||||++|||++++
T Consensus 70 ~tpgV~~Fvg~~~k 83 (83)
T 1m1h_A 70 KTPHVFRPVMVGGK 83 (83)
T ss_dssp TSTTEEEECEETTE
T ss_pred CCCCEEEEEECCCC
T ss_conf 67324787626980