HHsearch alignment of GI: 254780148 and MMDB domain: 1nz8_A_
>1nz8_A (A:) Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus}
Probab=99.96 E-value=1.1e-28 Score=191.28 Aligned_cols=112 Identities=30% Similarity=0.655 Sum_probs=104.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEE-CCEEEEEECCEECEEEEEEEECCC-----CC
Q ss_conf 886189995288538999999999997798111432663131012772-020356641203309999996186-----52
Q gi|254780148|r 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFPGYVLIKAVMTD-----KV 75 (177)
Q Consensus 2 ~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~-~g~~~~~~~plfpgYiFv~~~~~~-----~~ 75 (177)
+++|||++|+||+|++|+++|++++...++++.++++|+|++++.+.+ +|+++.+.+|||||||||++++++ +.
T Consensus 1 ~~~WYvl~~~sg~E~~v~~~L~~~~~~~~~~~~~~e~~~P~~~~~~~~~~g~~~~~~~~lfPGYvFv~~d~~~~~~~~~~ 80 (119)
T 1nz8_A 1 SIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEA 80 (119)
T ss_dssp CCEEEEEECCTTTHHHHHHHHHHHHHHHTCTTTCCEEECSEEEEEEECSSSCEEEEEEESSTTEEEEEECCCSSSSCCHH
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCEEEEEEEEECCCCCCHHH
T ss_conf 96599999678938999999999998728633453677368888999828716887664478089999982675554025
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 24442033036643278861002588999999765322
Q gi|254780148|r 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 (177)
Q Consensus 76 ~~~i~~t~gV~~~l~~~~~P~~i~~~ei~~l~~~~~~~ 113 (177)
|+.|++++||++||+++++|.|||+++|+.|+..++..
T Consensus 81 ~~~ir~~~gV~~~v~~~~~p~~i~~~ei~~i~~~~~e~ 118 (119)
T 1nz8_A 81 WEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLL 118 (119)
T ss_dssp HHHHHHSTTCCCCCCSSSSSCBCCHHHHHHHHHHHTSC
T ss_pred HHHHHCCCCCEEECCCCCEECCCCHHHHHHHHHHHCCC
T ss_conf 57766599934986899976518999999999973879