HHsearch alignment of GI: 254780148 and MMDB domain: 2jvv_A_
>2jvv_A (A:) Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A
Probab=100.00 E-value=7.5e-42 Score=270.20 Aligned_cols=174 Identities=45% Similarity=0.884 Sum_probs=165.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf 86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 (177)
Q Consensus 3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t 82 (177)
++||+++|+||+|.+|+++|++++...++++.++++|+|++..++.++|+++.+.+|+|||||||+++.+++.|..++++
T Consensus 7 ~~WYvl~~~~~~E~~v~~~L~~~~~~~~~~~~g~~~f~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 86 (181)
T 2jvv_A 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHCHHHCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEEECCCCCEEEEEEC
T ss_conf 74999993689369999999999987060120208886454799990783279888975008999997278735899705
Q ss_pred CEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf 303664327-8861002588999999765322210000123478977999518778971999998288988999998168
Q gi|254780148|r 83 PKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 (177)
Q Consensus 83 ~gV~~~l~~-~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~G 161 (177)
+|+++++++ +++|++||+++|+.|+..++...........+.+|+.|+|++|||+|++|.|.++|++++++.|.+++||
T Consensus 87 ~gv~~~v~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~VrI~~Gpf~G~~g~i~~v~~~~~r~~v~i~~~g 166 (181)
T 2jvv_A 87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 (181)
T ss_dssp ------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETT
T ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf 63688347876688876878964222223431345663210247868999047899957999998388899999999779
Q ss_pred CEEEEEECHHHHEEC
Q ss_conf 704788567871233
Q gi|254780148|r 162 RVTPVELAYNQVEKI 176 (177)
Q Consensus 162 r~~~v~l~~~~ieki 176 (177)
+.++|+++.++|||+
T Consensus 167 ~~~~v~v~~~~ie~v 181 (181)
T 2jvv_A 167 RATPVELDFSQVEKA 181 (181)
T ss_dssp EEEEEEECTTTEEEC
T ss_pred CCEEEEECHHHEECC
T ss_conf 956899878998819