HHsearch results for GI: 254780148 and protein with PDBid: 1m1h_A

>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=100.00  E-value=0  Score=317.59  Aligned_cols=174  Identities=41%  Similarity=0.716  Sum_probs=161.7

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEE--------------------------------
Q ss_conf             988618999528853899999999999779811143266313101277--------------------------------
Q gi|254780148|r    1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV--------------------------------   48 (177)
Q Consensus         1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~--------------------------------   48 (177)
                      |.++||++||.||+|++|+++|++++...++++++.+|.+|++++...                                
T Consensus         9 m~kkWYvv~t~SG~E~kVk~~le~~i~~~~~~~~i~~v~vP~e~v~e~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~i   88 (248)
T 1m1h_A            9 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRI   88 (248)
T ss_dssp             CCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECSSEEEEEEEETTEEEEEEESSSSCEEEEEECSSSEEEEEE
T ss_pred             HCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             05866999826695899999999999877972344089904279999962763012002332222211012345521453


Q ss_pred             ----------------------------------ECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf             ----------------------------------2020356641203309999996186522444203303664327886
Q gi|254780148|r   49 ----------------------------------RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN   94 (177)
Q Consensus        49 ----------------------------------~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~gV~~~l~~~~~   94 (177)
                                                        ++|+++.++++||||||||++++++++|+.|++|+||++||+++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gkk~~~er~LFPGYVFV~~~~~~~~~~~Ir~t~GV~~fVg~g~~  168 (248)
T 1m1h_A           89 ENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGK  168 (248)
T ss_dssp             CSSCEEEEECSTTCGGGGSCCBCSTTCEEEETTTTEEEEEEEECSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETTE
T ss_pred             ECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCE
T ss_conf             03310110023443222223334554321101104783699984358848999987272168887367424775206981


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHE
Q ss_conf             10025889999997653222100001234789779995187789719999982889889999981687047885678712
Q gi|254780148|r   95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE  174 (177)
Q Consensus        95 P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ie  174 (177)
                      |+||++++|+.|+..++++..  .....|.+||.|+|++|||+|++|.|.++|.+++|++|+++||||.|+|+|+++||+
T Consensus       169 P~pl~~~EI~~il~~~~~~~~--~~~~~f~~Gd~V~I~~GPF~g~~G~V~eid~ek~rv~Vlv~ifGR~tpVel~~~qVe  246 (248)
T 1m1h_A          169 PVPLKEEEVQNILNQIKRGVK--PSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVE  246 (248)
T ss_dssp             ECEECHHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred             EEECCHHHHHHHHHHHHCCCC--CCCCEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEECHHHEE
T ss_conf             014599999999987654666--654300179889994158999479999981888999999981699637987689978


Q ss_pred             EC
Q ss_conf             33
Q gi|254780148|r  175 KI  176 (177)
Q Consensus       175 ki  176 (177)
                      ||
T Consensus       247 Ki  248 (248)
T 1m1h_A          247 KI  248 (248)
T ss_dssp             --
T ss_pred             EC
T ss_conf             29