HHsearch results for GI: 254780148 and protein with PDBid: 1m1h_A
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=100.00 E-value=0 Score=317.59 Aligned_cols=174 Identities=41% Similarity=0.716 Sum_probs=161.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEE--------------------------------
Q ss_conf 988618999528853899999999999779811143266313101277--------------------------------
Q gi|254780148|r 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-------------------------------- 48 (177)
Q Consensus 1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~-------------------------------- 48 (177)
|.++||++||.||+|++|+++|++++...++++++.+|.+|++++...
T Consensus 9 m~kkWYvv~t~SG~E~kVk~~le~~i~~~~~~~~i~~v~vP~e~v~e~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~i 88 (248)
T 1m1h_A 9 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRI 88 (248)
T ss_dssp CCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECSSEEEEEEEETTEEEEEEESSSSCEEEEEECSSSEEEEEE
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 05866999826695899999999999877972344089904279999962763012002332222211012345521453
Q ss_pred ----------------------------------ECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf ----------------------------------2020356641203309999996186522444203303664327886
Q gi|254780148|r 49 ----------------------------------RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94 (177)
Q Consensus 49 ----------------------------------~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~gV~~~l~~~~~ 94 (177)
++|+++.++++||||||||++++++++|+.|++|+||++||+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gkk~~~er~LFPGYVFV~~~~~~~~~~~Ir~t~GV~~fVg~g~~ 168 (248)
T 1m1h_A 89 ENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGK 168 (248)
T ss_dssp CSSCEEEEECSTTCGGGGSCCBCSTTCEEEETTTTEEEEEEEECSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETTE
T ss_pred ECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCE
T ss_conf 03310110023443222223334554321101104783699984358848999987272168887367424775206981
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHE
Q ss_conf 10025889999997653222100001234789779995187789719999982889889999981687047885678712
Q gi|254780148|r 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 (177)
Q Consensus 95 P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ie 174 (177)
|+||++++|+.|+..++++.. .....|.+||.|+|++|||+|++|.|.++|.+++|++|+++||||.|+|+|+++||+
T Consensus 169 P~pl~~~EI~~il~~~~~~~~--~~~~~f~~Gd~V~I~~GPF~g~~G~V~eid~ek~rv~Vlv~ifGR~tpVel~~~qVe 246 (248)
T 1m1h_A 169 PVPLKEEEVQNILNQIKRGVK--PSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVE 246 (248)
T ss_dssp ECEECHHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred EEECCHHHHHHHHHHHHCCCC--CCCCEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEECHHHEE
T ss_conf 014599999999987654666--654300179889994158999479999981888999999981699637987689978
Q ss_pred EC
Q ss_conf 33
Q gi|254780148|r 175 KI 176 (177)
Q Consensus 175 ki 176 (177)
||
T Consensus 247 Ki 248 (248)
T 1m1h_A 247 KI 248 (248)
T ss_dssp --
T ss_pred EC
T ss_conf 29