HHsearch results for GI: 254780148 and protein with PDBid: 1nz8_A
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=99.97 E-value=2.5e-30 Score=200.32 Aligned_cols=110 Identities=31% Similarity=0.681 Sum_probs=101.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECC-EEEEEECCEECEEEEEEEECCC-----CC
Q ss_conf 88618999528853899999999999779811143266313101277202-0356641203309999996186-----52
Q gi|254780148|r 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPGYVLIKAVMTD-----KV 75 (177)
Q Consensus 2 ~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g-~~~~~~~plfpgYiFv~~~~~~-----~~ 75 (177)
+++|||+||+||+|++|+++|++++...++++.++++|+|++++.+.++| +++.+.+|||||||||++++++ ++
T Consensus 1 ~mkWYvv~t~sg~E~~v~~~L~~~~~~~~l~~~~~~v~vP~~~~~~~~~ggk~~~~~~~lFPGYiFV~~~l~d~~~~~~~ 80 (119)
T 1nz8_A 1 SIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEA 80 (119)
T ss_dssp CCEEEEEECCTTTHHHHHHHHHHHHHHHTCTTTCCEEECSEEEEEEECSSSCEEEEEEESSTTEEEEEECCCSSSSCCHH
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHH
T ss_conf 96499999688948999999999998739632254788678888999848726888775479579999993665664014
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 244420330366432788610025889999997653
Q gi|254780148|r 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 (177)
Q Consensus 76 ~~~i~~t~gV~~~l~~~~~P~~i~~~ei~~l~~~~~ 111 (177)
|+.|++|+||++|||++++|+||+++||++|+....
T Consensus 81 ~~~I~~t~gV~~fvg~~~~P~pv~~~Ei~~il~~~g 116 (119)
T 1nz8_A 81 WEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp HHHHHHSTTCCCCCCSSSSSCBCCHHHHHHHHHHHT
T ss_pred HHHHHCCCCCEEECCCCCEECCCCHHHHHHHHHHHC
T ss_conf 354145999059868999856089999999999738