HHsearch results for GI: 254780148 and protein with PDBid: 2do3_A
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.04 E-value=0.012 Score=34.58 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEE
Q ss_conf 2347897799951877897199999828898899999816870478
Q gi|254780148|r 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 (177)
Q Consensus 121 ~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v 166 (177)
..|++||.|+|++|-++|-.|.|.+++. .++.++-+.-.++..|
T Consensus 16 K~F~~GDHVkVi~G~~~GetGlVV~v~~--~~v~~~sD~t~~Ei~V 59 (69)
T 2do3_A 16 KYFKMGDHVKVIAGRFEGDTGLIVRVEE--NFVILFSDLTMHELKV 59 (69)
T ss_dssp SSCCTTCEEEESSSTTTTCEEEEEEECS--SCEEEEESSSCSEEEE
T ss_pred EECCCCCEEEEECCEECCCCEEEEEEEC--CEEEEEECCCCCEEEE
T ss_conf 5134998389906568697579999969--9999985899878999