HHsearch results for GI: 254780148 and protein with PDBid: 2jvv_A
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=100.00 E-value=0 Score=296.84 Aligned_cols=173 Identities=46% Similarity=0.897 Sum_probs=161.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf 86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 (177)
Q Consensus 3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t 82 (177)
++|||++|+||+|++|+++|+++++..+++++++++|+|+++..+.++|+++.+.+||||||||++++++++.|+.|++|
T Consensus 7 k~WYvv~t~~~~E~kv~~~L~~~~~~~~l~~~~~ev~~P~~~~~~~~~gk~~~~~~plFPGYvFv~~~~~~~~~~~i~~t 86 (181)
T 2jvv_A 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHCCHHHHCCEEECCEEEEEEECCCEEEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf 73999994789269999999999987173330548746478999971986899669852747999997489718998633
Q ss_pred CEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf 30366432-78861002588999999765322210000123478977999518778971999998288988999998168
Q gi|254780148|r 83 PKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 (177)
Q Consensus 83 ~gV~~~l~-~~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~G 161 (177)
+||+++++ .++.|.|+++++++.++..+........+...|++||+|+|++|||+|++|.|.++|.+++|++|+++|||
T Consensus 87 ~gv~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~I~~GPf~g~~g~v~~v~~~k~r~~V~l~i~G 166 (181)
T 2jvv_A 87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 (181)
T ss_dssp ------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETT
T ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf 88257657765488889989999999986431334653221007988999136899968999998077899999999679
Q ss_pred CEEEEEECHHHHEE
Q ss_conf 70478856787123
Q gi|254780148|r 162 RVTPVELAYNQVEK 175 (177)
Q Consensus 162 r~~~v~l~~~~iek 175 (177)
|.|+|++++++|+|
T Consensus 167 r~~~v~v~~~~v~k 180 (181)
T 2jvv_A 167 RATPVELDFSQVEK 180 (181)
T ss_dssp EEEEEEECTTTEEE
T ss_pred CCEEEEECHHHEEE
T ss_conf 95689987899880