HHsearch results for GI: 254780148 and protein with PDBid: 2jvv_A

>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=100.00  E-value=0  Score=296.84  Aligned_cols=173  Identities=46%  Similarity=0.897  Sum_probs=161.6

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      ++|||++|+||+|++|+++|+++++..+++++++++|+|+++..+.++|+++.+.+||||||||++++++++.|+.|++|
T Consensus         7 k~WYvv~t~~~~E~kv~~~L~~~~~~~~l~~~~~ev~~P~~~~~~~~~gk~~~~~~plFPGYvFv~~~~~~~~~~~i~~t   86 (181)
T 2jvv_A            7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV   86 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHHHCCHHHHCCEEECCEEEEEEECCCEEEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf             73999994789269999999999987173330548746478999971986899669852747999997489718998633


Q ss_pred             CEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf             30366432-78861002588999999765322210000123478977999518778971999998288988999998168
Q gi|254780148|r   83 PKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG  161 (177)
Q Consensus        83 ~gV~~~l~-~~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~G  161 (177)
                      +||+++++ .++.|.|+++++++.++..+........+...|++||+|+|++|||+|++|.|.++|.+++|++|+++|||
T Consensus        87 ~gv~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~I~~GPf~g~~g~v~~v~~~k~r~~V~l~i~G  166 (181)
T 2jvv_A           87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG  166 (181)
T ss_dssp             ------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETT
T ss_pred             CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf             88257657765488889989999999986431334653221007988999136899968999998077899999999679


Q ss_pred             CEEEEEECHHHHEE
Q ss_conf             70478856787123
Q gi|254780148|r  162 RVTPVELAYNQVEK  175 (177)
Q Consensus       162 r~~~v~l~~~~iek  175 (177)
                      |.|+|++++++|+|
T Consensus       167 r~~~v~v~~~~v~k  180 (181)
T 2jvv_A          167 RATPVELDFSQVEK  180 (181)
T ss_dssp             EEEEEEECTTTEEE
T ss_pred             CCEEEEECHHHEEE
T ss_conf             95689987899880