HHsearch results for GI: 254780148 and protein with PDBid: 2oug_A
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=100.00 E-value=6.8e-40 Score=257.56 Aligned_cols=161 Identities=17% Similarity=0.305 Sum_probs=145.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf 86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 (177)
Q Consensus 3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t 82 (177)
++|||++|+||+|++|+++|++ +++++|+|+.+..+.++|+++.+.+|||||||||+++..+..|+.|+++
T Consensus 2 k~Wyvv~t~~~~E~~~~~~L~~---------~g~~~f~P~~~~~~~~~~k~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 72 (162)
T 2oug_A 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT 72 (162)
T ss_dssp CEEEEEEECTTTHHHHHHHHHH---------TTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHHS
T ss_pred CCEEEEEEECCHHHHHHHHHHH---------CCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 8799999869989999999996---------6998982639999998999999998768968999942455468888545
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 30366432788610025889999997653222100001234789779995187789719999982889889999981687
Q gi|254780148|r 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 (177)
Q Consensus 83 ~gV~~~l~~~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr 162 (177)
+||+++|+++++|.+||+++|+.|+...+.... ....+.+||+|+|.+|||+|++|.|.++|++ .|+.|++++||+
T Consensus 73 ~gv~~~l~~~~~p~~i~~~~i~~l~~~~~~~~~---~~~~~~~Gd~V~I~~Gpf~g~~g~v~~~~~~-~r~~v~l~~lg~ 148 (162)
T 2oug_A 73 RGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV---DPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINK 148 (162)
T ss_dssp TTEEEECCSSSSSCCCCCHHHHHHHHCC-----------------CTTHHHHHHHHHHHHTTCSSHH-HHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCEEEEEECCCCCCEEEEEEECCC-CEEEEEEHHCCC
T ss_conf 765577148980241889999998734556764---5544337878999426999949999998898-879999677198
Q ss_pred EEEEEECHHHHEEC
Q ss_conf 04788567871233
Q gi|254780148|r 163 VTPVELAYNQVEKI 176 (177)
Q Consensus 163 ~~~v~l~~~~ieki 176 (177)
+++|+++.++|+||
T Consensus 149 ~~~v~v~~~~l~ki 162 (162)
T 2oug_A 149 EIKHSVKNTEFRKL 162 (162)
T ss_dssp HHHHHHHC------
T ss_pred CEEEEECHHHEEEC
T ss_conf 37999878996969