HHsearch results for GI: 254780148 and protein with PDBid: 2oug_A

>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=100.00  E-value=6.8e-40  Score=257.56  Aligned_cols=161  Identities=17%  Similarity=0.305  Sum_probs=145.1

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      ++|||++|+||+|++|+++|++         +++++|+|+.+..+.++|+++.+.+|||||||||+++..+..|+.|+++
T Consensus         2 k~Wyvv~t~~~~E~~~~~~L~~---------~g~~~f~P~~~~~~~~~~k~~~~~~plfpgYvFv~~~~~~~~~~~i~~~   72 (162)
T 2oug_A            2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT   72 (162)
T ss_dssp             CEEEEEEECTTTHHHHHHHHHH---------TTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHHS
T ss_pred             CCEEEEEEECCHHHHHHHHHHH---------CCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf             8799999869989999999996---------6998982639999998999999998768968999942455468888545


Q ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf             30366432788610025889999997653222100001234789779995187789719999982889889999981687
Q gi|254780148|r   83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR  162 (177)
Q Consensus        83 ~gV~~~l~~~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr  162 (177)
                      +||+++|+++++|.+||+++|+.|+...+....   ....+.+||+|+|.+|||+|++|.|.++|++ .|+.|++++||+
T Consensus        73 ~gv~~~l~~~~~p~~i~~~~i~~l~~~~~~~~~---~~~~~~~Gd~V~I~~Gpf~g~~g~v~~~~~~-~r~~v~l~~lg~  148 (162)
T 2oug_A           73 RGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV---DPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINK  148 (162)
T ss_dssp             TTEEEECCSSSSSCCCCCHHHHHHHHCC-----------------CTTHHHHHHHHHHHHTTCSSHH-HHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCEEEEEECCCCCCEEEEEEECCC-CEEEEEEHHCCC
T ss_conf             765577148980241889999998734556764---5544337878999426999949999998898-879999677198


Q ss_pred             EEEEEECHHHHEEC
Q ss_conf             04788567871233
Q gi|254780148|r  163 VTPVELAYNQVEKI  176 (177)
Q Consensus       163 ~~~v~l~~~~ieki  176 (177)
                      +++|+++.++|+||
T Consensus       149 ~~~v~v~~~~l~ki  162 (162)
T 2oug_A          149 EIKHSVKNTEFRKL  162 (162)
T ss_dssp             HHHHHHHC------
T ss_pred             CEEEEECHHHEEEC
T ss_conf             37999878996969