HHsearch results for GI: 254780148 and protein with PDBid: 3lpe_A
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=98.33 E-value=1.8e-06 Score=57.45 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=63.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf 86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 (177)
Q Consensus 3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t 82 (177)
+.-|+++|++|+|+.++..|.++....+++ ++.+++| +-+.|||||++....+....++..
T Consensus 10 ~~ifaVk~t~G~E~~va~~l~~k~~~~~l~--I~Si~~p-----------------~~lkGYIyVEA~~~~~V~~ai~gl 70 (92)
T 3lpe_A 10 HMIFAVRTMVGQEKNIAGLMASRAEKEQLD--VYSILAS-----------------ESLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHTTCC--EEEEEEC-----------------TTSTTEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEEC-----------------CCCCEEEEEEECCHHHHHHHHHCC
T ss_conf 638999846982999999999985289986--5999954-----------------998279999959889999998546
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 30366432788610025889999997
Q gi|254780148|r 83 PKVIGFLGTGENPSPVTDSEIEHIMN 108 (177)
Q Consensus 83 ~gV~~~l~~~~~P~~i~~~ei~~l~~ 108 (177)
+++.+.+ |..+|-+||++++.
T Consensus 71 ~~v~~~~-----~~~vp~~E~~~~L~ 91 (92)
T 3lpe_A 71 PRVRGIV-----PGTIAIEEIEPLLT 91 (92)
T ss_dssp TTEEEEC-----SSCCCHHHHHHHHC
T ss_pred CCEECCC-----CCCCCHHHHHHHCC
T ss_conf 6574204-----66528999986349