BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780148|ref|YP_003064561.1| transcription antitermination
protein NusG [Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter
asiaticus str. psy62]
gi|38195603|gb|AAR13466.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|254039825|gb|ACT56621.1| transcription antitermination protein NusG [Candidatus Liberibacter
asiaticus str. psy62]
gi|255957547|dbj|BAH96610.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957843|dbj|BAH96817.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957853|dbj|BAH96826.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957863|dbj|BAH96835.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957873|dbj|BAH96844.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957883|dbj|BAH96853.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957893|dbj|BAH96862.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957903|dbj|BAH96871.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957913|dbj|BAH96880.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957923|dbj|BAH96889.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957933|dbj|BAH96898.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957943|dbj|BAH96907.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957953|dbj|BAH96916.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957963|dbj|BAH96925.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957973|dbj|BAH96934.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957983|dbj|BAH96943.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957993|dbj|BAH96952.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958003|dbj|BAH96961.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958013|dbj|BAH96970.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958023|dbj|BAH96979.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958033|dbj|BAH96988.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958043|dbj|BAH96997.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958053|dbj|BAH97006.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958063|dbj|BAH97015.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958073|dbj|BAH97024.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958083|dbj|BAH97033.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958093|dbj|BAH97042.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958103|dbj|BAH97051.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958113|dbj|BAH97060.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958123|dbj|BAH97069.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|283362133|dbj|BAI65920.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362143|dbj|BAI65929.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362153|dbj|BAI65938.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362163|dbj|BAI65947.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362173|dbj|BAI65956.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362183|dbj|BAI65965.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362193|dbj|BAI65974.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362203|dbj|BAI65983.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362213|dbj|BAI65992.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362223|dbj|BAI66001.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362233|dbj|BAI66010.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
Length = 177
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF
Sbjct: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS
Sbjct: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
>gi|315122750|ref|YP_004063239.1| transcription antitermination protein NusG [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|289546834|gb|ADD10127.1| transcription antitermination protein NusG [Candidatus Liberibacter
solanacearum]
gi|313496152|gb|ADR52751.1| transcription antitermination protein NusG [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 177
Score = 305 bits (781), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 142/177 (80%), Positives = 167/177 (94%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT WYIVQVYSNCEKK VES+ GRL+R+GLD+LVTEIT+PSE+VVSVR+GRKVNSERRF
Sbjct: 1 MTSHWYIVQVYSNCEKKTVESMLGRLNRAGLDNLVTEITVPSEKVVSVRRGRKVNSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KAVMTD+VYHTI++TPKV+GFLG+G+NPSPV+DSEIEHIM Q+EA+V +PVS+
Sbjct: 61 FPGYVLLKAVMTDEVYHTIRNTPKVMGFLGSGKNPSPVSDSEIEHIMGQIEASVHKPVST 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE+GER+CVSDGPFASFNGIVK+VDEEKSR+ VEV IFGR TPVELAY+QVEKIV
Sbjct: 121 IIFEIGERICVSDGPFASFNGIVKDVDEEKSRLKVEVSIFGRATPVELAYSQVEKIV 177
>gi|133872295|gb|ABO40215.1| transcription antitermination component [Candidatus Liberibacter
americanus]
Length = 177
Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/177 (71%), Positives = 148/177 (83%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RW+I+QVYSNCEK AV+SI R +R+GL + + EI +PSE+VV VRKGRKV+SERRF
Sbjct: 1 MVSRWFIIQVYSNCEKSAVKSICERSNRTGLRNFLEEIIVPSEKVVVVRKGRKVDSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL KAVM D+VYH IK PKVIGFLG+ NPSPV+D EI IM QVEA+ PVSS
Sbjct: 61 FPGYVLAKAVMNDEVYHAIKSAPKVIGFLGSDNNPSPVSDEEINRIMGQVEASEYGPVSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE+GE+V VSDGPFASFNGIVK+VDE+KSR+ VEV+IFGR TPVEL+YNQVEKIV
Sbjct: 121 IMFEIGEQVYVSDGPFASFNGIVKDVDEDKSRLKVEVLIFGRATPVELSYNQVEKIV 177
>gi|325293351|ref|YP_004279215.1| Transcription antitermination protein nusG [Agrobacterium sp.
H13-3]
gi|325061204|gb|ADY64895.1| Transcription antitermination protein nusG [Agrobacterium sp.
H13-3]
Length = 176
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/176 (62%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GLDHL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLDHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 VSFEVGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176
>gi|15889255|ref|NP_354936.1| transcription antitermination protein NusG [Agrobacterium
tumefaciens str. C58]
gi|15157085|gb|AAK87721.1| transcription antitermination protein NusG [Agrobacterium
tumefaciens str. C58]
Length = 176
Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 137/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDSKPVPIPDYEADRILGQVQEGVERPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL YNQVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYNQVEKV 176
>gi|240850287|ref|YP_002971680.1| transcription antitermination protein NusG [Bartonella grahamii
as4aup]
gi|240267410|gb|ACS50998.1| transcription antitermination protein NusG [Bartonella grahamii
as4aup]
Length = 176
Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVEQILKQVQERVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|222148352|ref|YP_002549309.1| transcription antitermination protein NusG [Agrobacterium vitis S4]
gi|221735340|gb|ACM36303.1| transcription antitermination protein [Agrobacterium vitis S4]
Length = 176
Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/176 (61%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS
Sbjct: 61 FPGYVLVRANLTDEVYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 LSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176
>gi|227821742|ref|YP_002825712.1| transcription antitermination protein NusG [Sinorhizobium fredii
NGR234]
gi|227340741|gb|ACP24959.1| possible transcription antitermination protein NusG [Sinorhizobium
fredii NGR234]
Length = 176
Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E E I+ QV+ V+RP S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEAERILGQVQDGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|86357292|ref|YP_469184.1| transcription antitermination protein NusG [Rhizobium etli CFN 42]
gi|86281394|gb|ABC90457.1| transcription antitermination protein [Rhizobium etli CFN 42]
Length = 176
Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VTFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|163868084|ref|YP_001609288.1| transcription antitermination protein NusG [Bartonella tribocorum
CIP 105476]
gi|161017735|emb|CAK01293.1| transcription antitermination protein [Bartonella tribocorum CIP
105476]
Length = 176
Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P++D E++ I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVDQILKQVQEGVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|190891342|ref|YP_001977884.1| transcription antitermination protein [Rhizobium etli CIAT 652]
gi|190696621|gb|ACE90706.1| transcription antitermination protein [Rhizobium etli CIAT 652]
gi|327194521|gb|EGE61379.1| transcription antitermination protein [Rhizobium etli CNPAF512]
Length = 176
Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|222085663|ref|YP_002544193.1| transcription termination/antitermination factor NusG
[Agrobacterium radiobacter K84]
gi|221723111|gb|ACM26267.1| transcription termination/antitermination factor NusG
[Agrobacterium radiobacter K84]
Length = 176
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 136/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKAKQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP +S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176
>gi|209548922|ref|YP_002280839.1| transcription antitermination protein NusG [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209534678|gb|ACI54613.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 176
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDHEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|150396194|ref|YP_001326661.1| transcription antitermination protein NusG [Sinorhizobium medicae
WSM419]
gi|150027709|gb|ABR59826.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
Length = 176
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV +R+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLTHLFEKILVPTEKVVEIRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E + I+ QV+ V+RP S
Sbjct: 61 FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ISFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|116251526|ref|YP_767364.1| transcription antitermination protein NusG [Rhizobium leguminosarum
bv. viciae 3841]
gi|218677875|ref|ZP_03525772.1| transcription antitermination protein NusG [Rhizobium etli CIAT
894]
gi|241204152|ref|YP_002975248.1| transcription antitermination protein NusG [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115256174|emb|CAK07255.1| putative transcription antitermination protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|240858042|gb|ACS55709.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 176
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|49475393|ref|YP_033434.1| transcription antitermination protein NusG [Bartonella henselae
str. Houston-1]
gi|49238199|emb|CAF27409.1| Transcription antitermination protein [Bartonella henselae str.
Houston-1]
Length = 176
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERV+ VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVIEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P +S
Sbjct: 61 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPVPISDREAEQILKQVQERVESPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L +NQVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFNQVEKL 176
>gi|15965096|ref|NP_385449.1| transcription antitermination protein NusG [Sinorhizobium meliloti
1021]
gi|307314831|ref|ZP_07594424.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
gi|307322130|ref|ZP_07601504.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
gi|15074276|emb|CAC45922.1| Probable transcription antitermination protein [Sinorhizobium
meliloti 1021]
gi|306892215|gb|EFN23027.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
gi|306898945|gb|EFN29592.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
Length = 176
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 134/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKAKQKGLTHLFEKILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E + I+ QV+ V+RP S
Sbjct: 61 FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|49474312|ref|YP_032354.1| transcription antitermination protein NusG [Bartonella quintana
str. Toulouse]
gi|49239816|emb|CAF26207.1| Transcription antitermination protein [Bartonella quintana str.
Toulouse]
Length = 176
Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 136/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKIAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPIPISDREAEQILKQVQEGVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|163759401|ref|ZP_02166487.1| transcription antitermination protein NusG [Hoeflea phototrophica
DFL-43]
gi|162283805|gb|EDQ34090.1| transcription antitermination protein NusG [Hoeflea phototrophica
DFL-43]
Length = 176
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 134/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK +SI + + GL HL +I +P E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVADSIEEQARQKGLSHLFEKILVPVEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++A +TD+ +H IK+TPKV GFLG+ P P+ DSE E I+ QV+ V+RP S
Sbjct: 61 FPGYVMVRADLTDEAFHLIKNTPKVTGFLGSDSKPVPIPDSEAERILTQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 IAFEIGEQVRVSDGPFASFNGTVQEVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|319407388|emb|CBI81039.1| transcription antitermination protein [Bartonella sp. 1-1C]
Length = 182
Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV +R+GRKV+SER+F
Sbjct: 7 VAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKF 66
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS
Sbjct: 67 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVESPKSS 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 127 MSFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 182
>gi|319405861|emb|CBI79493.1| transcription antitermination protein [Bartonella sp. AR 15-3]
Length = 182
Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 137/173 (79%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQVYSN EKK E+I + GLDHL ++ +P+ERVV +R+GRKV+SER+FFPG
Sbjct: 10 RWYIVQVYSNFEKKVAEAIDKEAKQKGLDHLFKKVFVPTERVVEIRRGRKVDSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QVE V+ P SS+ F
Sbjct: 70 YILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVEEGVESPKSSMSF 129
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE+V V+DGPF SFNGIV+ V++E+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 130 EVGEQVRVADGPFVSFNGIVQEVEKERSRLKVEVLIFGRPTPVDLEFDQVEKL 182
>gi|319899061|ref|YP_004159154.1| transcription antitermination protein [Bartonella clarridgeiae 73]
gi|319403025|emb|CBI76580.1| transcription antitermination protein [Bartonella clarridgeiae 73]
Length = 182
Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ RWYIVQ YSN EKK E+I + GLDHL +I +P ERVV +R+GRKV+SER+F
Sbjct: 7 VAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPIERVVEIRRGRKVDSERKF 66
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS
Sbjct: 67 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVEAPKSS 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 127 MSFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182
>gi|319404387|emb|CBI77990.1| transcription antitermination protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 182
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 136/173 (78%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV +R+GRKV+SER+FFPG
Sbjct: 10 RWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS+ F
Sbjct: 70 YILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVKEGVESPKSSMSF 129
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 130 EVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182
>gi|121602807|ref|YP_988876.1| transcription antitermination protein NusG [Bartonella
bacilliformis KC583]
gi|120614984|gb|ABM45585.1| transcription termination/antitermination factor NusG [Bartonella
bacilliformis KC583]
Length = 176
Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 134/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P ERVV VR+GRKV+SER+F
Sbjct: 1 MVARWYIVQAYSNFEKKVAEAISKEAKQKGLDHLFKKIFVPIERVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVCAELTDDVYHLIKNTPKVTGFLGSDARPVPISDREAEQILQQVQEGVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNG+V+ V+E++SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VTFEVGEQVRVADGPFISFNGVVQEVEEDRSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|254693950|ref|ZP_05155778.1| transcription antitermination protein NusG [Brucella abortus bv. 3
str. Tulya]
gi|261214243|ref|ZP_05928524.1| transcription antitermination protein NusG [Brucella abortus bv. 3
str. Tulya]
gi|260915850|gb|EEX82711.1| transcription antitermination protein NusG [Brucella abortus bv. 3
str. Tulya]
Length = 175
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG + P+PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLGDSK-PAPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|153009272|ref|YP_001370487.1| transcription antitermination protein NusG [Ochrobactrum anthropi
ATCC 49188]
gi|239832136|ref|ZP_04680465.1| transcription termination/antitermination factor NusG [Ochrobactrum
intermedium LMG 3301]
gi|151561160|gb|ABS14658.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
gi|239824403|gb|EEQ95971.1| transcription termination/antitermination factor NusG [Ochrobactrum
intermedium LMG 3301]
Length = 175
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSELIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG + P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRATLTDAVFSLIKNTPKVTGFLGDSK-PVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|254714313|ref|ZP_05176124.1| transcription antitermination protein NusG [Brucella ceti
M644/93/1]
gi|254717750|ref|ZP_05179561.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
gi|261219594|ref|ZP_05933875.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
gi|261322089|ref|ZP_05961286.1| transcription antitermination protein NusG [Brucella ceti
M644/93/1]
gi|260924683|gb|EEX91251.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
gi|261294779|gb|EEX98275.1| transcription antitermination protein NusG [Brucella ceti
M644/93/1]
Length = 175
Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++A +TD V+ IK+TPKV GFLG + P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYLLVRAKLTDSVFSLIKNTPKVTGFLGDSK-PVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVSVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|17987027|ref|NP_539661.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. 16M]
gi|23502126|ref|NP_698253.1| transcription antitermination protein NusG [Brucella suis 1330]
gi|62290159|ref|YP_221952.1| transcription antitermination protein NusG [Brucella abortus bv. 1
str. 9-941]
gi|82700081|ref|YP_414655.1| transcription antitermination protein NusG [Brucella melitensis
biovar Abortus 2308]
gi|148560341|ref|YP_001259167.1| transcription antitermination protein NusG [Brucella ovis ATCC
25840]
gi|161619204|ref|YP_001593091.1| transcription antitermination protein NusG [Brucella canis ATCC
23365]
gi|163843513|ref|YP_001627917.1| transcription antitermination protein NusG [Brucella suis ATCC
23445]
gi|189024395|ref|YP_001935163.1| Bacterial transcription antitermination protein NusG [Brucella
abortus S19]
gi|225627717|ref|ZP_03785754.1| transcription termination/antitermination factor NusG [Brucella
ceti str. Cudo]
gi|225852745|ref|YP_002732978.1| transcription antitermination protein NusG [Brucella melitensis
ATCC 23457]
gi|237815667|ref|ZP_04594664.1| transcription termination/antitermination factor NusG [Brucella
abortus str. 2308 A]
gi|254689465|ref|ZP_05152719.1| transcription antitermination protein NusG [Brucella abortus bv. 6
str. 870]
gi|254697602|ref|ZP_05159430.1| transcription antitermination protein NusG [Brucella abortus bv. 2
str. 86/8/59]
gi|254701988|ref|ZP_05163816.1| transcription antitermination protein NusG [Brucella suis bv. 5
str. 513]
gi|254704530|ref|ZP_05166358.1| transcription antitermination protein NusG [Brucella suis bv. 3
str. 686]
gi|254706574|ref|ZP_05168402.1| transcription antitermination protein NusG [Brucella pinnipedialis
M163/99/10]
gi|254710316|ref|ZP_05172127.1| transcription antitermination protein NusG [Brucella pinnipedialis
B2/94]
gi|254730494|ref|ZP_05189072.1| transcription antitermination protein NusG [Brucella abortus bv. 4
str. 292]
gi|256031810|ref|ZP_05445424.1| transcription antitermination protein NusG [Brucella pinnipedialis
M292/94/1]
gi|256044895|ref|ZP_05447799.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. Rev.1]
gi|256113803|ref|ZP_05454603.1| transcription antitermination protein NusG [Brucella melitensis bv.
3 str. Ether]
gi|256159983|ref|ZP_05457698.1| transcription antitermination protein NusG [Brucella ceti
M490/95/1]
gi|256255211|ref|ZP_05460747.1| transcription antitermination protein NusG [Brucella ceti B1/94]
gi|256257712|ref|ZP_05463248.1| transcription antitermination protein NusG [Brucella abortus bv. 9
str. C68]
gi|256263768|ref|ZP_05466300.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 2 str. 63/9]
gi|256369671|ref|YP_003107181.1| transcription antitermination protein NusG [Brucella microti CCM
4915]
gi|260168944|ref|ZP_05755755.1| transcription antitermination protein NusG [Brucella sp. F5/99]
gi|260546704|ref|ZP_05822443.1| bacterial transcription antitermination protein NusG [Brucella
abortus NCTC 8038]
gi|260565503|ref|ZP_05835987.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 1 str. 16M]
gi|260566226|ref|ZP_05836696.1| bacterial transcription antitermination protein NusG [Brucella suis
bv. 4 str. 40]
gi|260754989|ref|ZP_05867337.1| transcription antitermination protein NusG [Brucella abortus bv. 6
str. 870]
gi|260758205|ref|ZP_05870553.1| transcription antitermination protein NusG [Brucella abortus bv. 4
str. 292]
gi|260762032|ref|ZP_05874375.1| transcription antitermination protein NusG [Brucella abortus bv. 2
str. 86/8/59]
gi|260883999|ref|ZP_05895613.1| transcription antitermination protein NusG [Brucella abortus bv. 9
str. C68]
gi|261222407|ref|ZP_05936688.1| transcription antitermination protein NusG [Brucella ceti B1/94]
gi|261314033|ref|ZP_05953230.1| transcription antitermination protein NusG [Brucella pinnipedialis
M163/99/10]
gi|261317880|ref|ZP_05957077.1| transcription antitermination protein NusG [Brucella pinnipedialis
B2/94]
gi|261752556|ref|ZP_05996265.1| transcription antitermination protein NusG [Brucella suis bv. 5
str. 513]
gi|261755214|ref|ZP_05998923.1| transcription antitermination protein NusG [Brucella suis bv. 3
str. 686]
gi|261758437|ref|ZP_06002146.1| bacterial transcription antitermination protein NusG [Brucella sp.
F5/99]
gi|265988909|ref|ZP_06101466.1| transcription antitermination protein NusG [Brucella pinnipedialis
M292/94/1]
gi|265991323|ref|ZP_06103880.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. Rev.1]
gi|265995160|ref|ZP_06107717.1| transcription antitermination protein NusG [Brucella melitensis bv.
3 str. Ether]
gi|265998373|ref|ZP_06110930.1| transcription antitermination protein NusG [Brucella ceti
M490/95/1]
gi|294852584|ref|ZP_06793257.1| transcription termination/antitermination factor NusG [Brucella sp.
NVSL 07-0026]
gi|297248553|ref|ZP_06932271.1| transcription termination/antitermination factor NusG [Brucella
abortus bv. 5 str. B3196]
gi|306844153|ref|ZP_07476747.1| transcription termination/antitermination factor NusG [Brucella sp.
BO1]
gi|17982681|gb|AAL51925.1| transcription antitermination protein nusg [Brucella melitensis bv.
1 str. 16M]
gi|23348088|gb|AAN30168.1| transcription antitermination protein NusG [Brucella suis 1330]
gi|62196291|gb|AAX74591.1| NusG, transcription antitermination protein NusG [Brucella abortus
bv. 1 str. 9-941]
gi|82616182|emb|CAJ11225.1| Bacterial transcription antitermination protein NusG:KOW:NGN:KOW
(Kyprides, Ouzounis, Woese) motif [Brucella melitensis
biovar Abortus 2308]
gi|148371598|gb|ABQ61577.1| transcription termination/antitermination factor NusG [Brucella
ovis ATCC 25840]
gi|161336015|gb|ABX62320.1| transcription termination/antitermination factor NusG [Brucella
canis ATCC 23365]
gi|163674236|gb|ABY38347.1| transcription termination/antitermination factor NusG [Brucella
suis ATCC 23445]
gi|189019967|gb|ACD72689.1| Bacterial transcription antitermination protein NusG [Brucella
abortus S19]
gi|225617722|gb|EEH14767.1| transcription termination/antitermination factor NusG [Brucella
ceti str. Cudo]
gi|225641110|gb|ACO01024.1| transcription termination/antitermination factor NusG [Brucella
melitensis ATCC 23457]
gi|237788965|gb|EEP63176.1| transcription termination/antitermination factor NusG [Brucella
abortus str. 2308 A]
gi|255999833|gb|ACU48232.1| transcription antitermination protein NusG [Brucella microti CCM
4915]
gi|260095754|gb|EEW79631.1| bacterial transcription antitermination protein NusG [Brucella
abortus NCTC 8038]
gi|260151571|gb|EEW86665.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 1 str. 16M]
gi|260155744|gb|EEW90824.1| bacterial transcription antitermination protein NusG [Brucella suis
bv. 4 str. 40]
gi|260668523|gb|EEX55463.1| transcription antitermination protein NusG [Brucella abortus bv. 4
str. 292]
gi|260672464|gb|EEX59285.1| transcription antitermination protein NusG [Brucella abortus bv. 2
str. 86/8/59]
gi|260675097|gb|EEX61918.1| transcription antitermination protein NusG [Brucella abortus bv. 6
str. 870]
gi|260873527|gb|EEX80596.1| transcription antitermination protein NusG [Brucella abortus bv. 9
str. C68]
gi|260920991|gb|EEX87644.1| transcription antitermination protein NusG [Brucella ceti B1/94]
gi|261297103|gb|EEY00600.1| transcription antitermination protein NusG [Brucella pinnipedialis
B2/94]
gi|261303059|gb|EEY06556.1| transcription antitermination protein NusG [Brucella pinnipedialis
M163/99/10]
gi|261738421|gb|EEY26417.1| bacterial transcription antitermination protein NusG [Brucella sp.
F5/99]
gi|261742309|gb|EEY30235.1| transcription antitermination protein NusG [Brucella suis bv. 5
str. 513]
gi|261744967|gb|EEY32893.1| transcription antitermination protein NusG [Brucella suis bv. 3
str. 686]
gi|262552841|gb|EEZ08831.1| transcription antitermination protein NusG [Brucella ceti
M490/95/1]
gi|262766273|gb|EEZ12062.1| transcription antitermination protein NusG [Brucella melitensis bv.
3 str. Ether]
gi|263002107|gb|EEZ14682.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. Rev.1]
gi|263093879|gb|EEZ17830.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 2 str. 63/9]
gi|264661106|gb|EEZ31367.1| transcription antitermination protein NusG [Brucella pinnipedialis
M292/94/1]
gi|294821173|gb|EFG38172.1| transcription termination/antitermination factor NusG [Brucella sp.
NVSL 07-0026]
gi|297175722|gb|EFH35069.1| transcription termination/antitermination factor NusG [Brucella
abortus bv. 5 str. B3196]
gi|306275596|gb|EFM57328.1| transcription termination/antitermination factor NusG [Brucella sp.
BO1]
gi|326409270|gb|ADZ66335.1| Bacterial transcription antitermination protein NusG [Brucella
melitensis M28]
gi|326538979|gb|ADZ87194.1| transcription termination/antitermination factor NusG [Brucella
melitensis M5-90]
Length = 175
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG + P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLGDSK-PVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|256061327|ref|ZP_05451475.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
gi|261325332|ref|ZP_05964529.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
gi|261301312|gb|EEY04809.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
Length = 175
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG + P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLGDSK-PVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TP++L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPIDLEYGQVDKL 175
>gi|182678325|ref|YP_001832471.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634208|gb|ACB94982.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
Length = 176
Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + ++ GL EI +P+E+VV +R+GRK+NSER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAAQRGLTEKFEEILVPTEQVVEIRRGRKINSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD++YH IK+TPKV GFLG + P P++D+E + I QV V+RP +S
Sbjct: 61 FPGYVLVKCDLTDELYHLIKETPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEVGETVRVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEYGQVEKV 176
>gi|254719303|ref|ZP_05181114.1| transcription antitermination protein NusG [Brucella sp. 83/13]
gi|265984304|ref|ZP_06097039.1| transcription antitermination protein NusG [Brucella sp. 83/13]
gi|306838948|ref|ZP_07471773.1| transcription termination/antitermination factor NusG [Brucella sp.
NF 2653]
gi|306840285|ref|ZP_07473058.1| transcription termination/antitermination factor NusG [Brucella sp.
BO2]
gi|264662896|gb|EEZ33157.1| transcription antitermination protein NusG [Brucella sp. 83/13]
gi|306289740|gb|EFM60926.1| transcription termination/antitermination factor NusG [Brucella sp.
BO2]
gi|306405981|gb|EFM62235.1| transcription termination/antitermination factor NusG [Brucella sp.
NF 2653]
Length = 175
Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG + P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLGDSK-PVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNG+V+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGVVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|328543344|ref|YP_004303453.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1]
gi|326413089|gb|ADZ70152.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1]
Length = 176
Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK +SI + ++ GL L EI +P E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVADSIREKAAQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ +H IK+TPKV GFLGT + P P+++SE + I++QV+ V+RP S
Sbjct: 61 FPGYVLVKMEMTDEAFHLIKNTPKVTGFLGTDQKPMPISESEAQRILHQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+KI
Sbjct: 121 ISFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKI 176
>gi|154253165|ref|YP_001413989.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1]
gi|154157115|gb|ABS64332.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1]
Length = 176
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 130/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ES+ + + GL EI +P+E VV VR+GRK+N+ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESLREQAEQQGLSEQFEEILVPTEEVVEVRRGRKINAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ YH +K+TPKV GFLG P P++ +E++ I++QV+ V+RP S
Sbjct: 61 FPGYVLVKVDLTDEAYHLVKNTPKVTGFLGADNKPQPISQAEVDRILHQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVADGPFASFNGFVEEVDEEKARLKVAVSIFGRATPVELEYAQVEKL 176
>gi|90417775|ref|ZP_01225687.1| transcription antitermination protein NusG [Aurantimonas
manganoxydans SI85-9A1]
gi|90337447|gb|EAS51098.1| transcription antitermination protein NusG [Aurantimonas
manganoxydans SI85-9A1]
Length = 176
Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 133/175 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK ESI + + GL +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD+V+ IK+TPKV GFLG P+P+T+ E E I+ QV+ V+RP +
Sbjct: 61 FPGYVLVKAELTDQVFSMIKNTPKVTGFLGAENRPTPITEKEAEQILAQVQDGVERPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F++GE+V VSDGPFASFNGIV+ VD+E++R+ VEV IFGR TPV+L + QVEK
Sbjct: 121 VSFDIGEQVRVSDGPFASFNGIVQEVDQERARLKVEVSIFGRATPVDLEFGQVEK 175
>gi|217979960|ref|YP_002364107.1| NusG antitermination factor [Methylocella silvestris BL2]
gi|217505336|gb|ACK52745.1| NusG antitermination factor [Methylocella silvestris BL2]
Length = 176
Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 130/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + ++ GL EI +P+E+VV VR+GRK+NSER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIKEQAAQRGLSAKFEEILVPTEQVVEVRRGRKINSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K ++D +YH IK+TPKV GFLG + P P++D+E + I QV V+RP +S
Sbjct: 61 FPGYVLVKCDLSDDIYHLIKNTPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V+DGPFASFNG V+ VDE +SRV V V IFGR TPVEL Y QVEK+
Sbjct: 121 ISFEIGETVRVADGPFASFNGTVEEVDESRSRVKVAVSIFGRATPVELEYAQVEKV 176
>gi|304391359|ref|ZP_07373301.1| transcription termination/antitermination factor NusG [Ahrensia sp.
R2A130]
gi|303295588|gb|EFL89946.1| transcription termination/antitermination factor NusG [Ahrensia sp.
R2A130]
Length = 176
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYI+ YSN EKK V+SI + + GL+ L +I +P+E+VV VRKG+KV++ER+F
Sbjct: 1 MAMRWYIIHAYSNFEKKVVDSILEQARQKGLEDLFEQILVPTEKVVEVRKGKKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL + MTD+ +H IK+TPKV GFLG+ P P+ D E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLARMNMTDQAFHLIKNTPKVTGFLGSDNKPMPIPDREADRILNQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASF+G V+ VDEE++R+ VEV IFGR TPV+L Y QVEK+
Sbjct: 121 VTFEIGESVRVSDGPFASFSGTVEEVDEERARLKVEVSIFGRATPVDLEYAQVEKV 176
>gi|197104678|ref|YP_002130055.1| transcription antitermination protein NusG [Phenylobacterium
zucineum HLK1]
gi|196478098|gb|ACG77626.1| transcription antitermination protein NusG [Phenylobacterium
zucineum HLK1]
Length = 189
Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 130/174 (74%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVNSER+FFPG
Sbjct: 16 KWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKFFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K MTD+ YH IK+TPKV GFLG+G P PV++ E+E I+ +E V+RP ++ F
Sbjct: 76 YVLVKMEMTDEAYHLIKNTPKVTGFLGSGSKPIPVSEKEVERIVGAIEEGVERPKPTITF 135
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E+GE+V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y QVEKI
Sbjct: 136 EIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEKIA 189
>gi|114704471|ref|ZP_01437379.1| transcription antitermination protein NusG [Fulvimarina pelagi
HTCC2506]
gi|114539256|gb|EAU42376.1| transcription antitermination protein NusG [Fulvimarina pelagi
HTCC2506]
Length = 176
Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL +I +P+E VV VR+GRKVN+ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTENVVEVRRGRKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TDKV+ IK+TPKV GFLG P P+TD E + I+N ++ V RP +
Sbjct: 61 FPGYVLVKAELTDKVFSMIKNTPKVTGFLGPDNRPVPITDKEADQILNHIQEGVDRPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE+V VSDGPFASFNGIV+ +D E+SR+ VEV IFGR TPV+L + QVEK+
Sbjct: 121 IMFDIGEQVRVSDGPFASFNGIVQEIDGERSRLKVEVSIFGRATPVDLEFGQVEKV 176
>gi|254470483|ref|ZP_05083887.1| transcription termination/antitermination factor NusG [Pseudovibrio
sp. JE062]
gi|211960794|gb|EEA95990.1| transcription termination/antitermination factor NusG [Pseudovibrio
sp. JE062]
Length = 177
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 130/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN E+K E+I R + GL+ E+ +P+E+ V VR+GRKV+SER+F
Sbjct: 1 MAKRWYIVHAYSNFERKVAEAIKERAQQQGLEDSFDEVLVPTEKFVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K M+D YH I DTPKV GFLG + P P++++E + I+NQV+ V+ P S
Sbjct: 61 FPGYVLVKMEMSDDAYHLINDTPKVSGFLGNDKKPMPISEAEAQRILNQVQEGVETPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VDEE++R+ V V IFGR TPVEL Y QV+K+
Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDEERARLKVTVSIFGRATPVELEYGQVDKV 176
>gi|118591199|ref|ZP_01548598.1| transcription antitermination protein NusG [Stappia aggregata IAM
12614]
gi|118436275|gb|EAV42917.1| transcription antitermination protein NusG [Stappia aggregata IAM
12614]
Length = 176
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL L EI +P E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MT++ +H IKDTPKV GFLG + P P+ + E I+NQV+ V RP S
Sbjct: 61 FPGYVLVKMEMTNEAFHLIKDTPKVTGFLGADQKPMPIPEKEAMRIINQVQEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176
>gi|154247287|ref|YP_001418245.1| NusG antitermination factor [Xanthobacter autotrophicus Py2]
gi|154161372|gb|ABS68588.1| NusG antitermination factor [Xanthobacter autotrophicus Py2]
Length = 176
Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK +SI + + GL L +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVADSIREQADQRGLTDLFEQILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I+ QV+ ++RP S
Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISESEAMRILQQVQEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 ITFEVGETVKVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEFAQVEKV 176
>gi|258541216|ref|YP_003186649.1| transcription antitermination protein NusG [Acetobacter
pasteurianus IFO 3283-01]
gi|256632294|dbj|BAH98269.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-01]
gi|256635351|dbj|BAI01320.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-03]
gi|256638406|dbj|BAI04368.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-07]
gi|256641460|dbj|BAI07415.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-22]
gi|256644515|dbj|BAI10463.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-26]
gi|256647570|dbj|BAI13511.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-32]
gi|256650623|dbj|BAI16557.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256653614|dbj|BAI19541.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-12]
Length = 176
Score = 213 bits (542), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I + GL + EI +PSE V+ VR+G+KVN+ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ +H +KDTPKV GFLGT P+P++ +E E I+ Q E VQ P S+
Sbjct: 61 FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 176
>gi|329114824|ref|ZP_08243581.1| Transcription antitermination protein NusG [Acetobacter pomorum
DM001]
gi|326695955|gb|EGE47639.1| Transcription antitermination protein NusG [Acetobacter pomorum
DM001]
Length = 188
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I + GL + EI +PSE V+ VR+G+KVN+ER+F
Sbjct: 13 MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 72
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ +H +KDTPKV GFLGT P+P++ +E E I+ Q E VQ P S+
Sbjct: 73 FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 132
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 133 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 188
>gi|148256408|ref|YP_001240993.1| transcription antitermination protein NusG [Bradyrhizobium sp.
BTAi1]
gi|146408581|gb|ABQ37087.1| transcription antitermination protein nusG [Bradyrhizobium sp.
BTAi1]
Length = 185
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 130/174 (74%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YSN EKK ESI + + L+ L ++ +P E+V VR+GRK+++ER+FFPG
Sbjct: 11 RWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPLEKVTEVRRGRKIDAERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +TD+ +H IK+TPKV GFLG P P+++SE I+NQ++ V+RP SSV F
Sbjct: 71 YVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILNQMQEGVERPKSSVSF 130
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL +NQVEKIV
Sbjct: 131 EIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFNQVEKIV 184
>gi|254501154|ref|ZP_05113305.1| transcription termination/antitermination factor NusG [Labrenzia
alexandrii DFL-11]
gi|222437225|gb|EEE43904.1| transcription termination/antitermination factor NusG [Labrenzia
alexandrii DFL-11]
Length = 176
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL L EI +P E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MT++ +H I+DTPKV GFLG + P P+ + E I+NQV+ V RP S
Sbjct: 61 FPGYVLVKMDMTNEAFHLIRDTPKVTGFLGADQKPMPIPEKEALRIINQVQEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176
>gi|16127435|ref|NP_421999.1| transcription antitermination protein NusG [Caulobacter crescentus
CB15]
gi|221236245|ref|YP_002518682.1| transcription antitermination protein NusG [Caulobacter crescentus
NA1000]
gi|295688156|ref|YP_003591849.1| NusG antitermination factor [Caulobacter segnis ATCC 21756]
gi|13424883|gb|AAK25167.1| transcription antitermination protein NusG [Caulobacter crescentus
CB15]
gi|220965418|gb|ACL96774.1| transcription antitermination protein nusG [Caulobacter crescentus
NA1000]
gi|295430059|gb|ADG09231.1| NusG antitermination factor [Caulobacter segnis ATCC 21756]
Length = 185
Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 128/174 (73%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVN+ER+FFPG
Sbjct: 12 KWYIVHAYSNFEKKVAESIREQAKNQGLEENFSEILVPTEDVVEIRRGRKVNAERKFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K ++D+ YH IK+TPKV GFLG+G P PV++ E++ I+ +E V P + V +
Sbjct: 72 YVLVKMNLSDEAYHLIKNTPKVTGFLGSGSKPMPVSEKEVQRIIGTIEEGVAAPKAVVLY 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL YNQVEKI
Sbjct: 132 EVGENVRVTDGPFASFNGSVEYVDEEKARLRVTVSIFGRATPVELEYNQVEKIA 185
>gi|39936337|ref|NP_948613.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris CGA009]
gi|192292063|ref|YP_001992668.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris TIE-1]
gi|39650192|emb|CAE28715.1| transcription antitermination protein, NusG [Rhodopseudomonas
palustris CGA009]
gi|192285812|gb|ACF02193.1| NusG antitermination factor [Rhodopseudomonas palustris TIE-1]
Length = 176
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIKEQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|75675537|ref|YP_317958.1| transcription antitermination protein NusG [Nitrobacter
winogradskyi Nb-255]
gi|74420407|gb|ABA04606.1| transcription antitermination protein nusG [Nitrobacter
winogradskyi Nb-255]
Length = 176
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E IM+QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|167648397|ref|YP_001686060.1| transcription antitermination protein NusG [Caulobacter sp. K31]
gi|167350827|gb|ABZ73562.1| NusG antitermination factor [Caulobacter sp. K31]
Length = 185
Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 129/173 (74%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVN+ER+FFPG
Sbjct: 12 KWYIVHAYSNFEKKVAESIREQAKSHGLEDSFSEILVPTEDVVEIRRGRKVNAERKFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K ++D+ YH IK+TPKV GFLG+ P PV++ E++ I+ +E V+RP + V F
Sbjct: 72 YVLVKMHLSDEAYHLIKNTPKVTGFLGSASKPQPVSEKEVQRIVGAIEEGVERPKTVVLF 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y+QVEKI
Sbjct: 132 EIGENVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYSQVEKI 184
>gi|316933506|ref|YP_004108488.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
gi|315601220|gb|ADU43755.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
Length = 176
Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|260469687|ref|ZP_05813849.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075]
gi|259028546|gb|EEW29860.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075]
Length = 175
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 131/175 (74%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD V+ +K+TPKV GFLG + P P+T++E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLGDSK-PVPITEAEAQRILNQVQEGVERPKPS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174
>gi|307946270|ref|ZP_07661605.1| transcription termination/antitermination factor NusG [Roseibium
sp. TrichSKD4]
gi|307769934|gb|EFO29160.1| transcription termination/antitermination factor NusG [Roseibium
sp. TrichSKD4]
Length = 177
Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 127/177 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL L EI +P E+V VR+GRKV +ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVTEVRRGRKVEAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MT++ +H IKDTPKV GFLG + P P+ + E I+NQV+ V RP S
Sbjct: 61 FPGYVLVKMDMTNEAFHLIKDTPKVTGFLGADQKPIPIPEREALQIINQVQEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKLA 177
>gi|85715149|ref|ZP_01046133.1| transcription antitermination protein NusG [Nitrobacter sp.
Nb-311A]
gi|85698064|gb|EAQ35937.1| transcription antitermination protein NusG [Nitrobacter sp.
Nb-311A]
Length = 176
Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E IM+QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|92117079|ref|YP_576808.1| transcription antitermination protein NusG [Nitrobacter
hamburgensis X14]
gi|91799973|gb|ABE62348.1| transcription antitermination protein nusG [Nitrobacter
hamburgensis X14]
Length = 176
Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 133/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK +ESI + + GL+ L ++ +P+E+V +R+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVLESIREQAKQRGLEDLFEQVLVPTEKVTEIRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|319783303|ref|YP_004142779.1| transcription termination/antitermination factor NusG
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169191|gb|ADV12729.1| transcription termination/antitermination factor NusG
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 175
Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 131/175 (74%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIHQIVVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD V+ +K+TPKV GFLG + P P+T++E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLGDSK-PVPITEAEAQRILNQVQEGVERPKPS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174
>gi|146340039|ref|YP_001205087.1| transcription antitermination protein NusG [Bradyrhizobium sp.
ORS278]
gi|146192845|emb|CAL76850.1| component in transcription antitermination [Bradyrhizobium sp.
ORS278]
Length = 185
Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 128/174 (73%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YSN EKK ESI + + L+ L ++ +P E V VR+GRK+N+ER+FFPG
Sbjct: 11 RWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPIENVTEVRRGRKINAERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +TD+ +H IK+TPKV GFLG P P+++ E I+NQ++ V+RP SSV F
Sbjct: 71 YVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEGEAMRILNQMQEGVERPKSSVSF 130
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E+GE V V+DGPFASF+G+V+ +DE +SR+ V V IFGR TPVEL +NQVEK+V
Sbjct: 131 EIGENVRVADGPFASFSGVVEEIDEARSRLKVAVSIFGRATPVELEFNQVEKVV 184
>gi|110634174|ref|YP_674382.1| transcription antitermination protein NusG [Mesorhizobium sp. BNC1]
gi|9957208|gb|AAG09265.1| NusG [EDTA-degrading bacterium BNC1]
gi|110285158|gb|ABG63217.1| transcription antitermination protein nusG [Chelativorans sp. BNC1]
Length = 174
Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YSN EKK ESI + + GL +L+ + +P+E+VV VR+GRKV++ER+FFPG
Sbjct: 3 RWYIVHAYSNFEKKVAESIEEQARQKGLSNLIENVVVPTEKVVEVRRGRKVDAERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+KA +TD V+ IK+TPKV GFLG + P P+T++E + I+ QV+ V+RP SV F
Sbjct: 63 YVLVKADLTDAVFSLIKNTPKVTGFLGDSK-PVPITEAEAQRILTQVQEGVERPKPSVTF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR PV+L + QVEK
Sbjct: 122 EIGEQVRVSDGPFASFNGFVQEVDEERSRLKVEVSIFGRAVPVDLEFGQVEK 173
>gi|298291420|ref|YP_003693359.1| NusG antitermination factor [Starkeya novella DSM 506]
gi|296927931|gb|ADH88740.1| NusG antitermination factor [Starkeya novella DSM 506]
Length = 176
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 128/175 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK +SI + ++ GL L ++ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVADSIKEQAAQRGLTDLFEQVLVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+ + E I+ QV+ ++RP S
Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPIAEKEAMRILQQVQEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V VSDGPFASFNGIV+ VD+ +SR+ V V IFGR TPVEL + QVEK
Sbjct: 121 ITFEVGETVKVSDGPFASFNGIVEEVDDARSRLKVAVSIFGRATPVELEFAQVEK 175
>gi|220921885|ref|YP_002497186.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219946491|gb|ACL56883.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 177
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 130/177 (73%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG ++ P P+ D+E E I QV +RP +
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGTERPKA 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ FEVGE V VSDGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 SISFEVGESVRVSDGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177
>gi|170738717|ref|YP_001767372.1| NusG antitermination factor [Methylobacterium sp. 4-46]
gi|168192991|gb|ACA14938.1| NusG antitermination factor [Methylobacterium sp. 4-46]
Length = 177
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG ++ P P+ D+E E I QV+ +RP +
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVQEGTERPKA 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 SISFEVGESVRVADGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177
>gi|86749396|ref|YP_485892.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris HaA2]
gi|86572424|gb|ABD06981.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris HaA2]
Length = 176
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|91977669|ref|YP_570328.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris BisB5]
gi|91684125|gb|ABE40427.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris BisB5]
Length = 176
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|13470537|ref|NP_102105.1| transcription antitermination protein NusG [Mesorhizobium loti
MAFF303099]
gi|14021278|dbj|BAB47891.1| transcription antitermination protein [Mesorhizobium loti
MAFF303099]
Length = 175
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD V+ +K+TPKV GFLG + P P+T++E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLGDSK-PVPITEAEAQRILNQVQEGVERPKPS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174
>gi|115525607|ref|YP_782518.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris BisA53]
gi|115519554|gb|ABJ07538.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris BisA53]
Length = 176
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQSKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|299135273|ref|ZP_07028464.1| NusG antitermination factor [Afipia sp. 1NLS2]
gi|298590250|gb|EFI50454.1| NusG antitermination factor [Afipia sp. 1NLS2]
Length = 176
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASF+G+V+ VD+ +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDDARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|319408378|emb|CBI82033.1| transcription antitermination protein [Bartonella schoenbuchensis
R1]
Length = 182
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/173 (61%), Positives = 138/173 (79%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GR+V+SER+FFPG
Sbjct: 10 RWYIVQAYSNFEKKVAEAIEKEAKQKGLDHLFEKIFVPTERVVEVRRGRRVDSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ A +TD+VYH IK+TPKV GFLG+ P P++D EIEHI+ QV+ V+ P SS+ F
Sbjct: 70 YVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREIEHILKQVQEGVESPKSSILF 129
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 130 EVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVIIFGRPTPVDLEFSQVEKL 182
>gi|209884793|ref|YP_002288650.1| transcription termination/antitermination factor NusG [Oligotropha
carboxidovorans OM5]
gi|209872989|gb|ACI92785.1| transcription termination/antitermination factor NusG [Oligotropha
carboxidovorans OM5]
Length = 176
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + L+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|163853396|ref|YP_001641439.1| transcription termination/antitermination factor NusG
[Methylobacterium extorquens PA1]
gi|188583667|ref|YP_001927112.1| NusG antitermination factor [Methylobacterium populi BJ001]
gi|218532254|ref|YP_002423070.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4]
gi|240140814|ref|YP_002965294.1| transcription termination factor [Methylobacterium extorquens AM1]
gi|254563324|ref|YP_003070419.1| transcription termination factor [Methylobacterium extorquens DM4]
gi|163665001|gb|ABY32368.1| transcription termination/antitermination factor NusG
[Methylobacterium extorquens PA1]
gi|179347165|gb|ACB82577.1| NusG antitermination factor [Methylobacterium populi BJ001]
gi|218524557|gb|ACK85142.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4]
gi|240010791|gb|ACS42017.1| transcription termination factor [Methylobacterium extorquens AM1]
gi|254270602|emb|CAX26605.1| transcription termination factor [Methylobacterium extorquens DM4]
Length = 177
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 128/177 (72%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL L E+ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG + P P+ D+E E I QV+ V RP
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKAKPVPIPDAEAERIKGQVQEGVDRPKH 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V FE+GE V VSDGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 TVSFEIGETVRVSDGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYGQVEKV 177
>gi|90424962|ref|YP_533332.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris BisB18]
gi|90106976|gb|ABD89013.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris BisB18]
Length = 176
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRK+++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKIDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++ E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEPEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|254420959|ref|ZP_05034683.1| transcription termination/antitermination factor NusG
[Brevundimonas sp. BAL3]
gi|196187136|gb|EDX82112.1| transcription termination/antitermination factor NusG
[Brevundimonas sp. BAL3]
Length = 191
Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK E + + + GL+ +EI +P+E VV +R+GRKVNSER+FFPG
Sbjct: 15 KWYIVNAYSNFEKKVAEQVRDQAKQQGLEDAFSEILVPTEDVVEIRRGRKVNSERKFFPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YVL+K MTD+ YH +K+TPKV GFLG G P PV++ E+++I+ QVE V+RP ++
Sbjct: 75 YVLVKMEMTDQAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPTI 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F++GE+V V DGPFASF+G V++VDEE++R+ V V IFGR TPVEL Y QVEK+
Sbjct: 135 RFDIGEKVKVIDGPFASFDGSVESVDEEQARLRVAVSIFGRATPVELEYAQVEKVA 190
>gi|27380527|ref|NP_772056.1| transcription antitermination protein NusG [Bradyrhizobium
japonicum USDA 110]
gi|27353691|dbj|BAC50681.1| transcription antitermination protein [Bradyrhizobium japonicum
USDA 110]
Length = 184
Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 129/173 (74%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YSN EKK ESI + + GL+ L + +P+E+V VR+GRK+++ER+FFPG
Sbjct: 12 RWYIVHAYSNFEKKVAESIREQAKQRGLEELFELVLVPTEKVTEVRRGRKIDAERKFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +SV F
Sbjct: 72 YVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVSF 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 132 EIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 184
>gi|170750243|ref|YP_001756503.1| NusG antitermination factor [Methylobacterium radiotolerans JCM
2831]
gi|170656765|gb|ACB25820.1| NusG antitermination factor [Methylobacterium radiotolerans JCM
2831]
Length = 177
Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL L E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG ++ P P+ D+E E I QV V RP
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGVDRPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ FE+GE V V+DGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK
Sbjct: 121 SISFEIGETVRVADGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYAQVEK 176
>gi|158422506|ref|YP_001523798.1| transcription antitermination protein [Azorhizobium caulinodans ORS
571]
gi|158329395|dbj|BAF86880.1| transcription antitermination protein [Azorhizobium caulinodans ORS
571]
Length = 180
Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK +SI + + L L +I +P+E+VV VR+GRKV++ER+F
Sbjct: 5 MAKRWYIVHAYSNFEKKVADSIREQAEQRNLTDLFEQILVPTEKVVEVRRGRKVDTERKF 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I+ QV+ ++RP S
Sbjct: 65 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISENEAMRILQQVQEGIERPKPS 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +EVGE V VSDGPFA+FNGIV+ VDE +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 125 ISYEVGETVKVSDGPFATFNGIVEEVDESRSRLKVAVSIFGRATPVELEFGQVEKV 180
>gi|83312245|ref|YP_422509.1| transcription antitermination protein NusG [Magnetospirillum
magneticum AMB-1]
gi|82947086|dbj|BAE51950.1| Transcription antiterminator [Magnetospirillum magneticum AMB-1]
Length = 177
Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 127/175 (72%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY++ VYS EKK +SI + + G+ +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3 TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGAKVNAERKFF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E I+ QV+ V+RP S+
Sbjct: 63 PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V VSDGPF SFNG+V+ VDEEK+R+ V V IFGR TPVEL Y+QVEKI
Sbjct: 123 IFEVGEQVRVSDGPFTSFNGLVEEVDEEKARLKVAVSIFGRSTPVELEYSQVEKI 177
>gi|209964025|ref|YP_002296940.1| transcription antitermination protein NusG [Rhodospirillum centenum
SW]
gi|209957491|gb|ACI98127.1| Transcription antitermination protein NusG, putative
[Rhodospirillum centenum SW]
Length = 176
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 126/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK ++I + + GL+ EI +P+E +V VR+G KVN+ER+F
Sbjct: 1 MAARWYVVHVYSGFEKKVAQAIREKAGQKGLEEKFEEILVPTEEIVEVRRGAKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K + D+ +H +K+TPKV GFLG G P P+++ E I+NQV+ ++RP S
Sbjct: 61 FPGYVLVKMELQDETWHLVKNTPKVTGFLGGGGKPQPISEGEAMRILNQVKEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V V+DGPF SF G V+ VDE+K+RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 IQFEVGEQVRVTDGPFTSFTGYVEEVDEDKARVKVAVSIFGRATPVELEYTQVEKV 176
>gi|144900868|emb|CAM77732.1| transcription antitermination protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 177
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 126/175 (72%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY+V VYS EKK +SI + + G+ + +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3 TARWYVVHVYSGFEKKVSQSIREQAEQKGMAEMFEQILVPTEEVVEVRRGTKVNAERKFF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E IM QV+ V+RP SV
Sbjct: 63 PGYVLVKMELTDDSWHLVKNTPKVTGFLGGKGRPVPITEREAERIMQQVQEGVERPKPSV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V DGPF SFNG+V+ VDEE++R+ V V IFGR TPVEL Y QVEK+
Sbjct: 123 VFEVGEQVRVCDGPFTSFNGMVEEVDEERARLKVAVSIFGRSTPVELEYAQVEKV 177
>gi|329890177|ref|ZP_08268520.1| transcription termination/antitermination factor NusG
[Brevundimonas diminuta ATCC 11568]
gi|328845478|gb|EGF95042.1| transcription termination/antitermination factor NusG
[Brevundimonas diminuta ATCC 11568]
Length = 191
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 130/175 (74%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK E + + + GL+ +EI +P+E V+ +R+G+KVN+ER+FFPG
Sbjct: 15 KWYIVHAYSNFEKKVAEQLRDQAKQQGLEDAFSEILVPTEDVIEIRRGKKVNAERKFFPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YVL+K MTD+ YH +K+TPKV GFLG G P PV++ E+++I+ QVE V+RP ++
Sbjct: 75 YVLVKMEMTDEAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPTI 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V V DGPFASF+G V++VDEE +R+ V V IFGR TPVEL YNQVEK+
Sbjct: 135 RFDIGENVKVIDGPFASFDGQVESVDEENARLRVAVSIFGRPTPVELEYNQVEKV 189
>gi|58039757|ref|YP_191721.1| transcription antitermination protein NusG [Gluconobacter oxydans
621H]
gi|58002171|gb|AAW61065.1| Transcription antitermination protein NusG [Gluconobacter oxydans
621H]
Length = 176
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK I + ++ GL +I +PSE V +R+GRKVN+ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIASHIQEQAAQKGLSDHFEQILVPSEDVTEMRRGRKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H +KDTPKV GFLGT P+P+T +E + IM Q + V+RP SS
Sbjct: 61 FPGYVLVKMELTDEAWHLVKDTPKVTGFLGTRNRPTPITAAEADRIMKQAQEGVERPRSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPF SF G++++VD+E+ R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 LSFEIGEQVRVADGPFTSFTGMIEDVDDERQRLKVSVSIFGRSTPVDLDFTQVEKL 176
>gi|83594032|ref|YP_427784.1| transcription antitermination protein NusG [Rhodospirillum rubrum
ATCC 11170]
gi|83576946|gb|ABC23497.1| transcription antitermination protein nusG [Rhodospirillum rubrum
ATCC 11170]
Length = 176
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY++ VYS E K +SI + + G+D + E+ +P+E +V VR+G KVN+ER+F
Sbjct: 1 MTARWYVIHVYSGFENKVAQSIREQAIQKGMDSRIEEVLVPTEEIVEVRRGAKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K ++D+ +H +K+T KV GFLG PSP++D E E I++QV+ ++RP S
Sbjct: 61 FPGYVLVKMDLSDETWHLVKNTAKVTGFLGGRGRPSPISDREAERILHQVQEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VGE+V V DGPF SFNG+V++VDEEK+R+ V V IFGR TPVEL Y+QVEK+
Sbjct: 121 ITFDVGEQVRVCDGPFTSFNGMVEDVDEEKARLKVSVSIFGRSTPVELEYSQVEKV 176
>gi|83858578|ref|ZP_00952100.1| transcription antitermination protein NusG [Oceanicaulis alexandrii
HTCC2633]
gi|83853401|gb|EAP91253.1| transcription antitermination protein NusG [Oceanicaulis alexandrii
HTCC2633]
Length = 177
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YSN EKK E+I + GL+ E+ +P+E VV VR+GRKVN+ER++
Sbjct: 1 MAAKWYIVHAYSNFEKKVAEAIKAEAALQGLEDKFEEVLVPTEEVVEVRRGRKVNAERKY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ YH +KDTP+V GFLG+G P+PV ++E+ IM Q+E +RP +
Sbjct: 61 FPGYVLVKMDMTDEAYHLVKDTPRVTGFLGSGRRPTPVPEAEVRRIMGQMEEDAERPRPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EVGE V V DG F SFNG+V+ VD+EK + V + IFGR TPVEL Y QVEKI
Sbjct: 121 VSYEVGETVRVIDGHFQSFNGLVEEVDDEKGVLKVAINIFGRATPVELEYAQVEKI 176
>gi|114328705|ref|YP_745862.1| transcription antitermination protein NusG [Granulibacter
bethesdensis CGDNIH1]
gi|114316879|gb|ABI62939.1| transcription antitermination protein nusG [Granulibacter
bethesdensis CGDNIH1]
Length = 176
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I ++GL EI +PSE VV +R+G+KVN+ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIAQQIRETAVQNGLIDHFDEILVPSEEVVELRRGQKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD +H ++DTP+V GFLG+ PSP++++E + I+ Q + V+RP +
Sbjct: 61 FPGYVLVKMELTDDTWHLVRDTPRVTGFLGSRTRPSPISEAEADRILRQAQEGVERPRPA 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG+V+ VDEEK RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VLFEVGEQIRVADGPFTSFNGVVEEVDEEKGRVKVSVSIFGRSTPVELEYGQVEKV 176
>gi|296117260|ref|ZP_06835852.1| transcription antitermination protein NusG [Gluconacetobacter
hansenii ATCC 23769]
gi|295976213|gb|EFG82999.1| transcription antitermination protein NusG [Gluconacetobacter
hansenii ATCC 23769]
Length = 176
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ VYS EKK + I + ++ GL EI +PSE V VR+G+KVNSER+F
Sbjct: 1 MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEVRRGQKVNSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP+ +E E IM Q + V+R S
Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTKPSPIPKAEAERIMKQAQEGVERVRPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG ++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VTFEVGEQIRVADGPFTSFNGTIEEVDEEKGRLTVSVSIFGRSTPVDLEYNQVEKV 176
>gi|288957408|ref|YP_003447749.1| transcriptional antiterminator [Azospirillum sp. B510]
gi|288909716|dbj|BAI71205.1| transcriptional antiterminator [Azospirillum sp. B510]
Length = 176
Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK ++I + ++ GL+ EI +P+E VV VR+G K+N+ER+F
Sbjct: 1 MAARWYVVHVYSGFEKKVSQAIREKAAQKGLEDKFEEILVPTEEVVEVRRGSKINTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ + +K+TPKV FLG G P P++ E E I++QV+ +RP S
Sbjct: 61 FPGYVLVKMDLTDESWSLVKNTPKVTDFLGGGGKPQPISQREAERIIHQVQEGFERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V VSDGPF SFNG+V+ VDEEKSR+ V V IFGR TPVEL Y QVEKI
Sbjct: 121 ITFEVGEQVRVSDGPFTSFNGVVEEVDEEKSRLKVAVSIFGRSTPVELEYTQVEKI 176
>gi|162146512|ref|YP_001600971.1| transcription antitermination protein NusG [Gluconacetobacter
diazotrophicus PAl 5]
gi|209543489|ref|YP_002275718.1| transcription antitermination protein NusG [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785087|emb|CAP54631.1| transcription antitermination protein NusG [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531166|gb|ACI51103.1| NusG antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
Length = 176
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I + ++ GL ++ +PSE VV VR+G+KV++ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIAQHIKEQAAQKGLSDHFGDVLVPSEEVVEVRRGQKVSAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP++ +E + IM Q + V+RP S
Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPISGAEADRIMKQAQEGVERPRPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPF SFNG ++ VDE+K+R+ V V IFGR TPV+L Y+QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFTSFNGTIEEVDEDKARLKVSVSIFGRSTPVDLEYSQVEKL 176
>gi|218508075|ref|ZP_03505953.1| transcription antitermination protein NusG [Rhizobium etli Brasil
5]
Length = 157
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 123/157 (78%)
Query: 20 ESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTI 79
E I + + GL+HL +I +P+E+VV VR+GRKV+SER+FFPGYVL++A +TD+ YH I
Sbjct: 1 EDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKFFPGYVLVRANLTDEAYHLI 60
Query: 80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139
K+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S+ FE+GE+V VSDGPFASF
Sbjct: 61 KNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKASITFEIGEQVRVSDGPFASF 120
Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
NG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 NGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 157
>gi|315499731|ref|YP_004088534.1| nusg antitermination factor [Asticcacaulis excentricus CB 48]
gi|315417743|gb|ADU14383.1| NusG antitermination factor [Asticcacaulis excentricus CB 48]
Length = 189
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 129/174 (74%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK ES+ + GL+ +EI +P+E VV VR+GRK NSER+FFPG
Sbjct: 16 KWYIVHAYSNFEKKVAESLREQAKAQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +TD+ +H +K+TPKV GFLG+G P PV++ E++ I+ VE A ++P + + F
Sbjct: 76 YVLVKMELTDEAFHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVEVAAEKPKTVLSF 135
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GE++ V DGPFASF+G+V++VD++ +R+ V V IFGR TPV+L + QVEK V
Sbjct: 136 DIGEKIKVIDGPFASFDGVVESVDQDHARLKVSVSIFGRATPVDLEFGQVEKTV 189
>gi|296533970|ref|ZP_06896488.1| transcription termination/antitermination factor NusG [Roseomonas
cervicalis ATCC 49957]
gi|296265701|gb|EFH11808.1| transcription termination/antitermination factor NusG [Roseomonas
cervicalis ATCC 49957]
Length = 178
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V VYS EKK + + + ++ GL + +I +PSE V VR+G+K+NSER+FFPG
Sbjct: 5 KWYVVHVYSGFEKKIAQQLKEQAAQKGLADQIGDILVPSEEVTEVRRGQKINSERKFFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL+K MTD+ +H +KDTPKV GFLG PSP++++E + I+ QV+ V +P +V
Sbjct: 65 YVLVKMAMTDEAWHLVKDTPKVTGFLGARNRPSPISEAEAQRIVRQVQEGVDKPKRPAVV 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNG ++ VDEE+ RV V V IFGR TPVEL Y QVEK+
Sbjct: 125 FEVGEQVRVADGPFTSFNGTIEEVDEERGRVKVSVSIFGRATPVELEYAQVEKV 178
>gi|330991780|ref|ZP_08315730.1| Transcription antitermination protein nusG [Gluconacetobacter sp.
SXCC-1]
gi|329761248|gb|EGG77742.1| Transcription antitermination protein nusG [Gluconacetobacter sp.
SXCC-1]
Length = 176
Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 123/176 (69%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ VYS EKK + I + ++ GL EI +PSE V +R+G+KVNSER+F
Sbjct: 1 MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEMRRGQKVNSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP+ E E IM Q + V+R S
Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPIPKVEAERIMKQAQEGVERVRPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE++ V+DGPF SFNG ++ VDEE+ R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VTFEIGEQIRVADGPFTSFNGTIEEVDEERGRLKVSVSIFGRSTPVDLEYNQVEKV 176
>gi|323136001|ref|ZP_08071084.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
gi|322399092|gb|EFY01611.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
Length = 176
Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI ++ GL EI +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREGAAQRGLTDAFEEILVPTEQVVEVRRGRKVSTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD V+ IK+TPKV GFLG P P+++ E I QV V+RP +
Sbjct: 61 FPGYVLVKCNLTDPVFSLIKNTPKVTGFLGADNKPMPISEEEAMRIKGQVAEGVERPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 ISFEVGETVRVADGPFASFNGLVEEVDEARSRLKVAVSIFGRPTPVELEFGQVEKV 176
>gi|114570357|ref|YP_757037.1| transcription antitermination protein nusG [Maricaulis maris MCS10]
gi|114340819|gb|ABI66099.1| transcription antitermination protein nusG [Maricaulis maris MCS10]
Length = 177
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 126/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WYIV YSN EKK ++I S GL+ EI +P+E VV VRKGRK+N+ER++
Sbjct: 1 MSAKWYIVHAYSNFEKKVADAIRIEASIKGLEDKFEEILVPTEDVVEVRKGRKINAERKY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ YH + TPKV GFLG+G+ P PV+++E++ I+ Q+E +RP +
Sbjct: 61 FPGYVLVKMDMTDQAYHLVTSTPKVTGFLGSGKKPIPVSENEVKRILGQMEEDAERPRPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+GE V V DG F SFNG+V+ VD+E R+ V + IFGR TPVEL Y QVEKI
Sbjct: 121 VSYEIGETVNVIDGHFQSFNGVVEEVDDENGRLKVAINIFGRATPVELEYAQVEKI 176
>gi|329850796|ref|ZP_08265641.1| transcription termination/antitermination factor NusG
[Asticcacaulis biprosthecum C19]
gi|328841111|gb|EGF90682.1| transcription termination/antitermination factor NusG
[Asticcacaulis biprosthecum C19]
Length = 191
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 127/172 (73%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK ES+ + GL+ +EI +P+E VV VR+GRK NSER+FFPG
Sbjct: 18 KWYIVHAYSNFEKKVAESLRDQAKSQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K ++D+ YH +K+TPKV GFLG+G P PV++ E++ I+ V+AAV+RP + F
Sbjct: 78 YVLVKMELSDEAYHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVDAAVERPKPVLAF 137
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++GE+V ++ G FASF+G+V++ D E +R+ V V IFGR TPV+L Y+QVEK
Sbjct: 138 DIGEKVKITSGHFASFDGVVESADPEHARLRVSVSIFGRATPVDLEYSQVEK 189
>gi|312115370|ref|YP_004012966.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
gi|311220499|gb|ADP71867.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
Length = 176
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK +SI R + +GLD +I +P E VV VR+GRKV +ER+F
Sbjct: 1 MTKRWYIVHAYSNFEKKVADSIRERAAAAGLDECFEDIVVPMEEVVEVRRGRKVATERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K M D+ + IK+TPKV GFLG P P+++ E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLVKMDMNDRAFLLIKNTPKVTGFLGADNKPQPISEIEAQRILNQVKEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPFASF+G V+ VDEE++R+ V V IFGR TPVEL Y QVEKI
Sbjct: 121 ISFEIGEQVRVADGPFASFSGHVEEVDEERARLKVAVSIFGRATPVELEYAQVEKI 176
>gi|117924143|ref|YP_864760.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1]
gi|117607899|gb|ABK43354.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1]
Length = 176
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY++ YS EK+ S+ ++ +G+ EI +PSE V+ +RKG KV SER+F
Sbjct: 1 MSKRWYVIHAYSGFEKRVKSSLEEKVRLTGMSKYFDEILVPSEEVIELRKGAKVTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K + D+ +H +KD PKV GFLG G P P++D E+E I+ QVE +++P
Sbjct: 61 FPGYVLVKMDLNDETWHLVKDIPKVAGFLGGGGRPQPLSDREVEKILQQVETGMEKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F VGE+V V+DGPF SFNG+V+ V+E+KSR+ V V IFGR TPVEL + QVEKI
Sbjct: 121 VSFAVGEQVRVTDGPFVSFNGVVEEVEEDKSRLKVSVSIFGRATPVELDFIQVEKI 176
>gi|296447965|ref|ZP_06889872.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
gi|296254532|gb|EFH01652.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
Length = 176
Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI ++ L EI +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREGAAQRSLSDKFEEILVPTEQVVEVRRGRKVSSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K ++D V+ IK+TPKV GFLG P P++++E I QV V+RP +
Sbjct: 61 FPGYVLVKCDLSDAVFSLIKNTPKVTGFLGADNKPMPISEAEALRIKGQVAEGVERPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V V+DGPFASFNG+V+ VD+ +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 ISFEVGETVRVADGPFASFNGVVEEVDDARSRLKVAVSIFGRPTPVELEFGQVEKV 176
>gi|304321357|ref|YP_003855000.1| transcription antitermination protein NusG [Parvularcula
bermudensis HTCC2503]
gi|303300259|gb|ADM09858.1| transcription antitermination protein NusG [Parvularcula
bermudensis HTCC2503]
Length = 178
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YSN EKK E+I GL HL E+ +P+E VV +R+GRK+N+ERR+
Sbjct: 1 MDAKWYIVNAYSNFEKKVAEAIKQSAEEKGLSHLFEEVLVPTEEVVEIRRGRKINTERRY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
FPGYVL+K VM D+ +H + T KV GFLG+G+ P PV+ E++ I+ ++ Q P
Sbjct: 61 FPGYVLVKMVMNDQSFHVVNSTSKVTGFLGSGKKPIPVSQKEVDRILGTMDEQEQVPAKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ +++GE V V DGPFASF+G+V+++DEE +R+ V V IFGR TPVEL Y+QV+K
Sbjct: 121 AILYDIGETVKVVDGPFASFSGVVEDIDEENARLKVSVSIFGRATPVELEYSQVDK 176
>gi|302382912|ref|YP_003818735.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC
15264]
gi|302193540|gb|ADL01112.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC
15264]
Length = 193
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK + I + + L+ +EI +P+E VV +R+GRKVNSER+FFPG
Sbjct: 17 KWYIVHAYSNFEKKVAQHIRDQAKQRDLEECFSEILVPTEDVVEIRRGRKVNSERKFFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YVL+K +TD YH +KDTPKV GFLG G P PV++ E++ I+ VE V+RP ++
Sbjct: 77 YVLVKMELTDDAYHLVKDTPKVTGFLGAAGGTKPLPVSEREVQAIIGAVEEGVERPKPTI 136
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F++GE V V DGPFASF+G V++VDE+ +R+ V V IFGR TPV+L Y+QVEK
Sbjct: 137 RFDIGETVKVIDGPFASFDGQVESVDEDAARLRVAVSIFGRPTPVDLEYSQVEK 190
>gi|148260034|ref|YP_001234161.1| transcription antitermination protein NusG [Acidiphilium cryptum
JF-5]
gi|326403010|ref|YP_004283091.1| transcription antitermination protein NusG [Acidiphilium multivorum
AIU301]
gi|146401715|gb|ABQ30242.1| transcription antitermination protein nusG [Acidiphilium cryptum
JF-5]
gi|325049871|dbj|BAJ80209.1| transcription antitermination protein NusG [Acidiphilium multivorum
AIU301]
Length = 176
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ VYS EKK I ++ GL + ++ +P+E VV +R+ +KVN+ER+F
Sbjct: 1 MAKRWYVLHVYSGFEKKIATQIMETAAQKGLADQIEQVMVPAEEVVEIRRAQKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD +H ++D PKV GFLGT P+P++++E + ++ QV+ + +
Sbjct: 61 FPGYVLVKMEMTDDAWHLVRDIPKVTGFLGTKLKPTPISEAEAQRMLQQVQEGTEHRRPA 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V V+DGPF SFNG+++++DE+K RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VVFEIGEQVRVADGPFTSFNGVIEDIDEDKGRVKVSVSIFGRSTPVELEYGQVEKL 176
>gi|163796064|ref|ZP_02190026.1| Transcription antiterminator [alpha proteobacterium BAL199]
gi|159178523|gb|EDP63063.1| Transcription antiterminator [alpha proteobacterium BAL199]
Length = 176
Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK ++ + + G++ L+ E+ +P+E ++ VR+G KV++ER+F
Sbjct: 1 MAIRWYVVHVYSGFEKKVATAVREQAAAQGMEDLIEEVLVPTEEIIEVRRGAKVSAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K +TD+ +H + PKV GFLG P+P+T+ E I+ QV V RP S
Sbjct: 61 FPGYILVKMQLTDETWHLVTSQPKVTGFLGGKGKPTPITEGEATRIIKQVSEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPFA+FNG V++VDEEK+R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 ITFEIGEQVRVADGPFATFNGYVEDVDEEKARLKVAVSIFGRSTPVDLEFTQVEKV 176
>gi|37913002|gb|AAR05331.1| predicted transcription antiterminator NusG [uncultured marine
alpha proteobacterium HOT2C01]
Length = 177
Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WYIV YS EKK +I + ++ +EI +P+E VV V+KG+K N+ER+F
Sbjct: 1 MSHKWYIVHAYSGFEKKVAAAIFEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL K MTD+ YH +K PKV GFLG T PS V++SEI I+ +E V P
Sbjct: 61 FPGYVLTKMEMTDETYHMVKSLPKVSGFLGHTQGKPSAVSESEINKILQDIEEGVTSPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK
Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176
>gi|254294452|ref|YP_003060475.1| NusG antitermination factor [Hirschia baltica ATCC 49814]
gi|254042983|gb|ACT59778.1| NusG antitermination factor [Hirschia baltica ATCC 49814]
Length = 180
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 124/176 (70%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YSN EKK SI + + L+HL EI +P+E VVSV +G+K +ERR+FPG
Sbjct: 5 RWYIVHAYSNFEKKVAASIREQAAMQELEHLFEEIEVPTEEVVSVVRGKKKTTERRYFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
YVL+K +TD YH +K+TPKV GFLG G+ P PV SE++ IM Q A +RP + +
Sbjct: 65 YVLVKMQLTDAAYHLVKETPKVTGFLGADGGKKPLPVPQSEVDRIMGQASEAAERPEIPN 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EVGE+V V+DGPFASF G V++VD E +R+ V V IFGR TPV+L + QVEK+
Sbjct: 125 VIYEVGEKVKVTDGPFASFEGAVEDVDLEAARLKVTVSIFGRETPVDLEFGQVEKL 180
>gi|119713237|gb|ABL97303.1| putative transcription antiterminator NusG [uncultured marine
bacterium HF10_12C08]
Length = 177
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT +WYIV YS EKK +I + ++ +EI +P+E VV V+KG+K N+ER+F
Sbjct: 1 MTHKWYIVHAYSGFEKKVAAAILEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL K MTD+ YH +K PKV GFLG T PS V +S+I I+ +E V P
Sbjct: 61 FPGYVLTKMEMTDETYHMVKALPKVSGFLGHTQGKPSAVPESDINKILQDIEEGVTSPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK
Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176
>gi|294085946|ref|YP_003552706.1| transcription antiterminator [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665521|gb|ADE40622.1| Transcription antiterminator [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 176
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V V+S EKK ++I + GL+ + E+ +P+E VV +R+G +V SER+F
Sbjct: 1 MAKRWYVVHVFSGSEKKVAQAITEQAVTHGLEDQIDEVMVPTEEVVEMRRGVRVQSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K ++D+ + + P+V GFLG P P+T+SE E ++ Q+ V+RP S+
Sbjct: 61 FPGYILVKLELSDEAWQLVTSQPRVTGFLGGKGKPIPITNSEAERLIKQMSEGVERPRST 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE+V VSDGPFASFNG V+ D++K+R+ V V IFGR TPVEL Y+QVEK+
Sbjct: 121 ITFDIGEQVRVSDGPFASFNGYVEEADDDKARLKVTVSIFGRSTPVELEYSQVEKV 176
>gi|114319607|ref|YP_741290.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226001|gb|ABI55800.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
Length = 177
Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ YS EK+ S+ R+ R+G++ EI +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVIHAYSGFEKQVKRSLEERIKRAGMEDKFGEILVPTEEVVEMREGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ +H +K+ P+V+GF+G + P+P++D E E I+++V+ ++P
Sbjct: 61 FPGYVLVQMELDDETWHLVKEVPRVMGFIGGRSDRPAPISDREAEQILDRVKEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEMVRVTDGPFADFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFDQVEK 176
>gi|300690140|ref|YP_003751135.1| transcription termination factor [Ralstonia solanacearum PSI07]
gi|299077200|emb|CBJ49826.1| transcription termination factor [Ralstonia solanacearum PSI07]
Length = 194
Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFPG
Sbjct: 21 RWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G TG P+P++ E++ IM Q++ V++P
Sbjct: 81 YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQKEVDKIMTQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|300702760|ref|YP_003744361.1| transcription termination factor [Ralstonia solanacearum CFBP2957]
gi|299070422|emb|CBJ41717.1| transcription termination factor [Ralstonia solanacearum CFBP2957]
Length = 194
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFPG
Sbjct: 21 RWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G TG P+P++ E++ IM Q++ V++P
Sbjct: 81 YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|17547758|ref|NP_521160.1| transcription antitermination protein NusG [Ralstonia solanacearum
GMI1000]
gi|83749362|ref|ZP_00946358.1| NusG [Ralstonia solanacearum UW551]
gi|207721923|ref|YP_002252361.1| transcription antitermination protein [Ralstonia solanacearum
MolK2]
gi|207744563|ref|YP_002260955.1| transcription antitermination protein [Ralstonia solanacearum
IPO1609]
gi|17430063|emb|CAD16748.1| probable transcription antitermination protein [Ralstonia
solanacearum GMI1000]
gi|83723987|gb|EAP71169.1| NusG [Ralstonia solanacearum UW551]
gi|206587093|emb|CAQ17677.1| transcription antitermination protein [Ralstonia solanacearum
MolK2]
gi|206595969|emb|CAQ62896.1| transcription antitermination protein [Ralstonia solanacearum
IPO1609]
Length = 194
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFPG
Sbjct: 21 RWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G TG P+P++ E++ IM Q++ V++P
Sbjct: 81 YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|187930386|ref|YP_001900873.1| transcription antitermination protein NusG [Ralstonia pickettii
12J]
gi|309782812|ref|ZP_07677532.1| transcription termination/antitermination factor NusG [Ralstonia
sp. 5_7_47FAA]
gi|187727276|gb|ACD28441.1| NusG antitermination factor [Ralstonia pickettii 12J]
gi|308918236|gb|EFP63913.1| transcription termination/antitermination factor NusG [Ralstonia
sp. 5_7_47FAA]
Length = 194
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R GL HL +I +PSE V+ + GRK +ERR FPG
Sbjct: 21 RWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ MTD+ +H +K+T KV GF+G TG PSP++ SE++ IM Q++ V++P
Sbjct: 81 YVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|241664554|ref|YP_002982914.1| transcription antitermination protein NusG [Ralstonia pickettii
12D]
gi|240866581|gb|ACS64242.1| NusG antitermination factor [Ralstonia pickettii 12D]
Length = 194
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R GL HL +I +PSE V+ + GRK +ERR FPG
Sbjct: 21 RWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ MTD+ +H +K+T KV GF+G TG PSP++ SE++ IM Q++ V++P
Sbjct: 81 YVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|53804629|ref|YP_113536.1| transcription antitermination protein NusG [Methylococcus
capsulatus str. Bath]
gi|53758390|gb|AAU92681.1| transcription antitermination protein NusG [Methylococcus
capsulatus str. Bath]
Length = 177
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 127/176 (72%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++Q YSN E + S+ R++R+GL+H +I +P+E V+ +R+G++ ER+F
Sbjct: 1 MALRWYVIQAYSNFENRVKRSLEERIARAGLEHYFGKILVPTEEVLEMRQGQQRKGERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H ++D P+V+GF+G T ++P+P++D+E E I+ +VE V++P
Sbjct: 61 FPGYVLVQMELNDDTWHLVRDVPRVLGFVGGTPDHPAPISDAEAEAILARVEEGVKKPKH 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +EVGE V V DGPF FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLYEVGEVVRVIDGPFKDFNGVVEEVNYEKSKLRVSVLIFGRSTPVELEFGQVEK 176
>gi|300022529|ref|YP_003755140.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
gi|299524350|gb|ADJ22819.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
Length = 191
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 124/174 (71%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV Y+N E+K ++I R GLD L EI +P+E VV V++GRK+ +ER+F PG
Sbjct: 17 RWYIVHAYTNFERKVADAIRERAKAGGLDDLFEEIVVPTEEVVEVKRGRKIPTERKFLPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K MTD+ + IK+TPKV GFLG P P+ + E I+NQV+ V+RP ++ F
Sbjct: 77 YVLVKMKMTDQAFVMIKNTPKVTGFLGADNKPMPIPEDEALRILNQVKEGVERPRPTITF 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E+GE V V+DGPFASF G+V++VDEE+SRV V V IFGR TPVEL + QVEKI
Sbjct: 137 EIGENVKVADGPFASFTGVVEDVDEERSRVKVAVSIFGRPTPVELEFGQVEKIA 190
>gi|149925890|ref|ZP_01914153.1| transcription antitermination protein NusG [Limnobacter sp. MED105]
gi|149825178|gb|EDM84389.1| transcription antitermination protein NusG [Limnobacter sp. MED105]
Length = 177
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK ++ R+ RS L +I +PSE VV ++ G+K SERRF
Sbjct: 1 MSKRWYVVHAYSGLEKSVQRALQERIDRSEFSDLFGQILVPSEEVVEIKGGQKSISERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD +H +K+TPKV GF+G TG P+P++ E++ IM Q++ ++P
Sbjct: 61 FPGYVLVEMEMTDDSWHLVKNTPKVTGFVGGTGNRPTPISQKEVDKIMQQMQEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EVGE V V +GPFA FNG V+ ++ EKS++ V V IFGR TPVEL ++QVEK+
Sbjct: 121 KVLYEVGEMVRVKEGPFADFNGNVEEINYEKSKLRVSVTIFGRATPVELDFHQVEKV 177
>gi|226939174|ref|YP_002794245.1| transcription antitermination protein NusG [Laribacter
hongkongensis HLHK9]
gi|226714098|gb|ACO73236.1| NusG [Laribacter hongkongensis HLHK9]
Length = 175
Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EK +++ R+ R+ + HL +I +P E VV ++ G++ +ER+FFPG
Sbjct: 2 KWYVVHAYSGFEKSVQKALRERIERAEMQHLFGKILVPVEEVVDIKNGKRTLAERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K TPKV GF+G T P+P+ SE++ IM Q++ V++P V
Sbjct: 62 YVLVEMEMNDDTWHLVKSTPKVSGFIGGTANRPAPIKPSEVDAIMQQIQEGVEKPKPKVL 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG++V VSDGPFA FNG+V V+ E+SR+ V V IFGR TPVEL +NQVEK+
Sbjct: 122 FEVGQKVRVSDGPFADFNGVVDEVNYERSRLRVSVQIFGRDTPVELEFNQVEKL 175
>gi|299065395|emb|CBJ36564.1| transcription termination factor [Ralstonia solanacearum CMR15]
Length = 194
Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK S+ R+ R+ L H+ I +PSE VV ++ G K +ERRFFPG
Sbjct: 21 RWYVVHAYSGMEKSVQRSLQERIDRASLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G TG P+P++ E++ IM Q++ V++P
Sbjct: 81 YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|77461312|ref|YP_350819.1| transcription antitermination protein NusG [Pseudomonas fluorescens
Pf0-1]
gi|77385315|gb|ABA76828.1| transcription antitermination protein [Pseudomonas fluorescens
Pf0-1]
Length = 177
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGETVRVNDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|146281158|ref|YP_001171311.1| transcription antitermination protein NusG [Pseudomonas stutzeri
A1501]
gi|145569363|gb|ABP78469.1| transcription antitermination protein NusG [Pseudomonas stutzeri
A1501]
Length = 177
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVADGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|224827266|ref|ZP_03700360.1| NusG antitermination factor [Lutiella nitroferrum 2002]
gi|224600555|gb|EEG06744.1| NusG antitermination factor [Lutiella nitroferrum 2002]
Length = 177
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK +++ R+ RS + L ++ +P E VV V+ GRK SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKSVQKALRERIERSEVADLFGQVLVPVEEVVDVKNGRKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K TPKV GF+G T P+P++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLVEMEMTDETWHLVKSTPKVTGFVGGTANRPAPISKKEVESIMQQMQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGERV V DGPF FNG V V+ E++++ V V IFGR TPVEL +NQVEK+
Sbjct: 121 KVLFEVGERVRVIDGPFNDFNGSVDEVNYERNKIRVSVQIFGRETPVELDFNQVEKL 177
>gi|330815227|ref|YP_004358932.1| Transcription antitermination protein NusG [Burkholderia gladioli
BSR3]
gi|327367620|gb|AEA58976.1| Transcription antitermination protein NusG [Burkholderia gladioli
BSR3]
Length = 185
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV VR G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|238025919|ref|YP_002910150.1| transcription antitermination protein NusG [Burkholderia glumae
BGR1]
gi|237875113|gb|ACR27446.1| Transcription antitermination protein NusG [Burkholderia glumae
BGR1]
Length = 185
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV VR G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|330430119|gb|AEC21453.1| transcription antitermination protein NusG [Pusillimonas sp. T7-7]
Length = 177
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 125/176 (71%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+GL+ +I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALVERIERAGLETSFGQILVPSEEVVEVKGGKKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG +G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPAPISEREVEKILSQMEEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFGQVEK 176
>gi|163859291|ref|YP_001633589.1| transcription antitermination protein NusG [Bordetella petrii DSM
12804]
gi|163263019|emb|CAP45322.1| transcription antitermination protein NusG [Bordetella petrii]
Length = 177
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+GL I +PSE VV ++ G+K SERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEMKGGQKSISERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG +G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|15640350|ref|NP_229977.1| transcription antitermination protein NusG [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121592079|ref|ZP_01679061.1| transcription antitermination protein NusG [Vibrio cholerae
2740-80]
gi|147673290|ref|YP_001218591.1| transcription antitermination protein NusG [Vibrio cholerae O395]
gi|153827148|ref|ZP_01979815.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2]
gi|227080535|ref|YP_002809086.1| transcription antitermination protein NusG [Vibrio cholerae M66-2]
gi|229506882|ref|ZP_04396390.1| transcription antitermination protein NusG [Vibrio cholerae BX
330286]
gi|229508687|ref|ZP_04398181.1| transcription antitermination protein NusG [Vibrio cholerae B33]
gi|229516069|ref|ZP_04405520.1| transcription antitermination protein NusG [Vibrio cholerae RC9]
gi|229519861|ref|ZP_04409294.1| transcription antitermination protein NusG [Vibrio cholerae TM
11079-80]
gi|229527016|ref|ZP_04416412.1| transcription antitermination protein NusG [Vibrio cholerae
12129(1)]
gi|229606396|ref|YP_002877044.1| transcription antitermination protein NusG [Vibrio cholerae
MJ-1236]
gi|254292282|ref|ZP_04963028.1| transcription antitermination protein NusG [Vibrio cholerae
AM-19226]
gi|254851632|ref|ZP_05240982.1| transcription antitermination protein NusG [Vibrio cholerae MO10]
gi|255747124|ref|ZP_05421067.1| transcription antitermination protein NusG [Vibrio cholera CIRS
101]
gi|258620708|ref|ZP_05715743.1| transcription antitermination protein NusG [Vibrio mimicus VM573]
gi|258624493|ref|ZP_05719439.1| transcription antitermination protein NusG [Vibrio mimicus VM603]
gi|262166950|ref|ZP_06034670.1| transcription antitermination protein NusG [Vibrio cholerae RC27]
gi|262172579|ref|ZP_06040257.1| transcription antitermination protein NusG [Vibrio mimicus MB-451]
gi|262401584|ref|ZP_06078151.1| transcription antitermination protein NusG [Vibrio sp. RC586]
gi|297582227|ref|ZP_06944143.1| transcription antitermination protein NusG [Vibrio cholerae RC385]
gi|298501284|ref|ZP_07011081.1| transcription termination/antitermination factor NusG [Vibrio
cholerae MAK 757]
gi|18203205|sp|Q9KV35|NUSG_VIBCH RecName: Full=Transcription antitermination protein nusG
gi|9654736|gb|AAF93496.1| transcription antitermination protein NusG [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121546217|gb|EAX56537.1| transcription antitermination protein NusG [Vibrio cholerae
2740-80]
gi|146315173|gb|ABQ19712.1| transcription antitermination protein NusG [Vibrio cholerae O395]
gi|149738976|gb|EDM53292.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2]
gi|150421804|gb|EDN13805.1| transcription antitermination protein NusG [Vibrio cholerae
AM-19226]
gi|227008423|gb|ACP04635.1| transcription antitermination protein NusG [Vibrio cholerae M66-2]
gi|227012179|gb|ACP08389.1| transcription antitermination protein NusG [Vibrio cholerae O395]
gi|229335539|gb|EEO01020.1| transcription antitermination protein NusG [Vibrio cholerae
12129(1)]
gi|229343102|gb|EEO08087.1| transcription antitermination protein NusG [Vibrio cholerae TM
11079-80]
gi|229346972|gb|EEO11939.1| transcription antitermination protein NusG [Vibrio cholerae RC9]
gi|229354322|gb|EEO19251.1| transcription antitermination protein NusG [Vibrio cholerae B33]
gi|229355987|gb|EEO20906.1| transcription antitermination protein NusG [Vibrio cholerae BX
330286]
gi|229369051|gb|ACQ59474.1| transcription antitermination protein NusG [Vibrio cholerae
MJ-1236]
gi|254847337|gb|EET25751.1| transcription antitermination protein NusG [Vibrio cholerae MO10]
gi|255735173|gb|EET90575.1| transcription antitermination protein NusG [Vibrio cholera CIRS
101]
gi|258583242|gb|EEW08045.1| transcription antitermination protein NusG [Vibrio mimicus VM603]
gi|258586906|gb|EEW11620.1| transcription antitermination protein NusG [Vibrio mimicus VM573]
gi|261893655|gb|EEY39641.1| transcription antitermination protein NusG [Vibrio mimicus MB-451]
gi|262024655|gb|EEY43336.1| transcription antitermination protein NusG [Vibrio cholerae RC27]
gi|262352299|gb|EEZ01428.1| transcription antitermination protein NusG [Vibrio sp. RC586]
gi|297533528|gb|EFH72373.1| transcription antitermination protein NusG [Vibrio cholerae RC385]
gi|297539975|gb|EFH76039.1| transcription termination/antitermination factor NusG [Vibrio
cholerae MAK 757]
gi|327483189|gb|AEA77596.1| Transcription antitermination protein NusG [Vibrio cholerae
LMA3894-4]
Length = 182
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 FEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|288942084|ref|YP_003444324.1| NusG antitermination factor [Allochromatium vinosum DSM 180]
gi|288897456|gb|ADC63292.1| NusG antitermination factor [Allochromatium vinosum DSM 180]
Length = 177
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY++ YS E + S+ + R+GLD L +I +P+E VV +R G++ SER+F
Sbjct: 1 MSKRWYVIHAYSGFEGQVKRSLEDHVKRAGLDELFGQILVPTEEVVEMRGGQQRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ +TD+ +H +K+ PKV+GF+G TG+ P+P+ DS+ + I+ +++ ++P
Sbjct: 61 FPGYVLVHMELTDETWHLVKNVPKVMGFIGGTGDRPAPIPDSQADVILQRLQEGGEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E GE V V+DGPF FNG+V++VD +KSRV V V+IFGR TPVEL + QVEK+
Sbjct: 121 KVLYEPGEVVRVTDGPFTDFNGVVEDVDYDKSRVKVSVLIFGRSTPVELEFAQVEKV 177
>gi|311109630|ref|YP_003982483.1| transcription termination/antitermination factor NusG
[Achromobacter xylosoxidans A8]
gi|310764319|gb|ADP19768.1| transcription termination/antitermination factor NusG
[Achromobacter xylosoxidans A8]
gi|317401591|gb|EFV82218.1| transcription antitermination protein NusG [Achromobacter
xylosoxidans C54]
Length = 177
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+GL I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG +G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|91785478|ref|YP_560684.1| transcription antitermination protein NusG [Burkholderia xenovorans
LB400]
gi|187925629|ref|YP_001897271.1| transcription antitermination protein NusG [Burkholderia
phytofirmans PsJN]
gi|296163264|ref|ZP_06846028.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
gi|307731268|ref|YP_003908492.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
gi|323527615|ref|YP_004229768.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
gi|91689432|gb|ABE32632.1| transcription antitermination protein nusG [Burkholderia xenovorans
LB400]
gi|187716823|gb|ACD18047.1| NusG antitermination factor [Burkholderia phytofirmans PsJN]
gi|295886500|gb|EFG66354.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
gi|307585803|gb|ADN59201.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
gi|323384617|gb|ADX56708.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
Length = 185
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDQFGQILVPTEEVVEVKGGHKSVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|291613224|ref|YP_003523381.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1]
gi|291583336|gb|ADE10994.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1]
Length = 177
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK ++ R++R G++ L +I +P E VV ++ G+K SER+F
Sbjct: 1 MAKRWYVVHTYSQFEKSVQRALLERIAREGMEDLFGQILVPVEEVVELKSGQKNISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K+TPKV GFL G+ P+P++ E+++IM Q++A V++P
Sbjct: 61 FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMKPTPISQKEVDNIMQQMQAGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPF F+G+V++V+ +KS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEAVRVKEGPFTDFHGMVEDVNYDKSKLRVAVTIFGRSTPVELNFGQVEK 176
>gi|237809527|ref|YP_002893967.1| NusG antitermination factor [Tolumonas auensis DSM 9187]
gi|237501788|gb|ACQ94381.1| NusG antitermination factor [Tolumonas auensis DSM 9187]
Length = 180
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 122/174 (70%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ EI +P+E VV +R G+K SER+FFPG
Sbjct: 7 RWYVVQAFSGFEGRVAKSLKEHIKMHGMEDQFGEILVPTEEVVEMRAGQKRKSERKFFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D +H +++ P+V+GF+G T + P+P+TD E + I+N+++ +V +P
Sbjct: 67 YVLVQMIMNDASWHLVRNVPRVMGFIGGTSDRPAPITDKEADAILNRLQESVDKPKHKTL 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + VSDGPFA FNG V+ VD +KSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 127 FEPGEVIRVSDGPFADFNGTVEEVDYDKSRMKVSVLIFGRATPVELDFSQVEKV 180
>gi|229592915|ref|YP_002875034.1| transcription antitermination protein NusG [Pseudomonas fluorescens
SBW25]
gi|312963379|ref|ZP_07777862.1| transcription termination/antitermination factor [Pseudomonas
fluorescens WH6]
gi|229364781|emb|CAY52786.1| transcription antitermination protein [Pseudomonas fluorescens
SBW25]
gi|311282459|gb|EFQ61057.1| transcription termination/antitermination factor [Pseudomonas
fluorescens WH6]
Length = 177
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|114778898|ref|ZP_01453695.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1]
gi|114550867|gb|EAU53433.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1]
Length = 176
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 118/175 (67%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQVYSN E K + R+GL +I +P E VV +++G+KV S+R+F
Sbjct: 1 MAMRWYVVQVYSNFEDKVEHMLRENAERAGLADKFGQILVPREEVVELKEGQKVTSQRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ M D +H +KDT +V GFLG NP P+ E++ ++ Q+E ++RP
Sbjct: 61 FPGYILVEMDMNDDTWHVVKDTRQVSGFLGADNNPKPMPQREVDALIRQIEEGIERPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F++GE V V DGPFASFNG+V+ V E+K+++ V V IFGR TPVEL Y QVEK
Sbjct: 121 VMFDIGEAVRVIDGPFASFNGVVEEVMEDKAKLKVSVSIFGRPTPVELDYIQVEK 175
>gi|53723867|ref|YP_104179.1| transcription antitermination protein NusG [Burkholderia mallei
ATCC 23344]
gi|121599293|ref|YP_994470.1| transcription antitermination protein NusG [Burkholderia mallei
SAVP1]
gi|124385674|ref|YP_001027880.1| transcription antitermination protein NusG [Burkholderia mallei
NCTC 10229]
gi|126449300|ref|YP_001082976.1| transcription antitermination protein NusG [Burkholderia mallei
NCTC 10247]
gi|238563289|ref|ZP_00439115.2| transcription termination/antitermination factor NusG [Burkholderia
mallei GB8 horse 4]
gi|254175266|ref|ZP_04881927.1| transcription termination/antitermination factor NusG [Burkholderia
mallei ATCC 10399]
gi|254357132|ref|ZP_04973406.1| transcription termination/antitermination factor NusG [Burkholderia
mallei 2002721280]
gi|52427290|gb|AAU47883.1| transcription antitermination protein NusG [Burkholderia mallei
ATCC 23344]
gi|121228103|gb|ABM50621.1| transcription termination/antitermination factor NusG [Burkholderia
mallei SAVP1]
gi|124293694|gb|ABN02963.1| transcription termination/antitermination factor NusG [Burkholderia
mallei NCTC 10229]
gi|126242170|gb|ABO05263.1| transcription termination/antitermination factor NusG [Burkholderia
mallei NCTC 10247]
gi|148026196|gb|EDK84281.1| transcription termination/antitermination factor NusG [Burkholderia
mallei 2002721280]
gi|160696311|gb|EDP86281.1| transcription termination/antitermination factor NusG [Burkholderia
mallei ATCC 10399]
gi|238520997|gb|EEP84452.1| transcription termination/antitermination factor NusG [Burkholderia
mallei GB8 horse 4]
Length = 185
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|149376698|ref|ZP_01894457.1| transcription antitermination protein NusG [Marinobacter algicola
DG893]
gi|149359071|gb|EDM47536.1| transcription antitermination protein NusG [Marinobacter algicola
DG893]
Length = 177
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + ++ R++ +GL+ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLRERVALNGLEEKFGEILVPTEEVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K+TP+V+GF+G T + P+P+T+ E E I+ +VE+ +P
Sbjct: 61 YPGYVLVQMEMDDGTWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEIVRVTEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176
>gi|254449106|ref|ZP_05062558.1| transcription termination/antitermination factor NusG [gamma
proteobacterium HTCC5015]
gi|198261298|gb|EDY85591.1| transcription termination/antitermination factor NusG [gamma
proteobacterium HTCC5015]
Length = 175
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ YS E K + R+ R GL +I +PSE VV R G+K SER+FFPG
Sbjct: 2 RWYVVQAYSGFEAKVKALLEERIERLGLSECFGDILVPSEEVVENRDGKKRRSERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +KDTPKV+GF+ G E P+P+++ E + I+++V+ +V +P V
Sbjct: 62 YVLVQMEMDDETWHLVKDTPKVLGFIGGNKERPAPISEREAQQIIDRVQESVDKPRPKVL 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ VD EKSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 122 FEAGESVRVIDGPFNDFNGVVEEVDFEKSRLKVSVLIFGRSTPVDLEFSQVEK 174
>gi|237797420|ref|ZP_04585881.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|330962537|gb|EGH62797.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. maculicola str. ES4326]
gi|331020270|gb|EGI00327.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 177
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|186477601|ref|YP_001859071.1| transcription antitermination protein NusG [Burkholderia phymatum
STM815]
gi|184194060|gb|ACC72025.1| NusG antitermination factor [Burkholderia phymatum STM815]
Length = 185
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKSVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|53720834|ref|YP_109820.1| transcription antitermination protein NusG [Burkholderia
pseudomallei K96243]
gi|76809996|ref|YP_335155.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 1710b]
gi|83721510|ref|YP_443585.1| transcription antitermination protein NusG [Burkholderia
thailandensis E264]
gi|126441577|ref|YP_001060763.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 668]
gi|126454654|ref|YP_001068051.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 1106a]
gi|167564429|ref|ZP_02357345.1| transcription antitermination protein NusG [Burkholderia
oklahomensis EO147]
gi|167571575|ref|ZP_02364449.1| transcription antitermination protein NusG [Burkholderia
oklahomensis C6786]
gi|167582635|ref|ZP_02375509.1| transcription antitermination protein NusG [Burkholderia
thailandensis TXDOH]
gi|167620749|ref|ZP_02389380.1| transcription antitermination protein NusG [Burkholderia
thailandensis Bt4]
gi|167721589|ref|ZP_02404825.1| transcription antitermination protein NusG [Burkholderia
pseudomallei DM98]
gi|167740563|ref|ZP_02413337.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 14]
gi|167817768|ref|ZP_02449448.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 91]
gi|167826165|ref|ZP_02457636.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 9]
gi|167838224|ref|ZP_02465083.1| transcription antitermination protein NusG [Burkholderia
thailandensis MSMB43]
gi|167847677|ref|ZP_02473185.1| transcription antitermination protein NusG [Burkholderia
pseudomallei B7210]
gi|167896249|ref|ZP_02483651.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 7894]
gi|167904631|ref|ZP_02491836.1| transcription antitermination protein NusG [Burkholderia
pseudomallei NCTC 13177]
gi|167912896|ref|ZP_02499987.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 112]
gi|167920856|ref|ZP_02507947.1| transcription antitermination protein NusG [Burkholderia
pseudomallei BCC215]
gi|217424755|ref|ZP_03456252.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 576]
gi|237814161|ref|YP_002898612.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei MSHR346]
gi|242316083|ref|ZP_04815099.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1106b]
gi|254198425|ref|ZP_04904846.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei S13]
gi|254257944|ref|ZP_04948998.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1710a]
gi|257137630|ref|ZP_05585892.1| transcription antitermination protein NusG [Burkholderia
thailandensis E264]
gi|52211248|emb|CAH37237.1| transcription antitermination protein NusG [Burkholderia
pseudomallei K96243]
gi|76579449|gb|ABA48924.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1710b]
gi|83655335|gb|ABC39398.1| transcription termination/antitermination factor NusG [Burkholderia
thailandensis E264]
gi|126221070|gb|ABN84576.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 668]
gi|126228296|gb|ABN91836.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1106a]
gi|169655165|gb|EDS87858.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei S13]
gi|217392211|gb|EEC32236.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 576]
gi|237506347|gb|ACQ98665.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei MSHR346]
gi|242139322|gb|EES25724.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1106b]
gi|254216633|gb|EET06017.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1710a]
Length = 185
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|33591283|ref|NP_878927.1| transcription antitermination protein NusG [Bordetella pertussis
Tohama I]
gi|33599002|ref|NP_886562.1| transcription antitermination protein NusG [Bordetella
bronchiseptica RB50]
gi|33570925|emb|CAE40389.1| transcription antitermination protein NusG [Bordetella pertussis
Tohama I]
gi|33575048|emb|CAE30511.1| transcription antitermination protein NusG [Bordetella
bronchiseptica RB50]
Length = 177
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG +G P+P+++ E+E I+NQ+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILNQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|260752788|ref|YP_003225681.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552151|gb|ACV75097.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 179
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K E++ R GL LV I +P+E+ V VR+G+KV ER+ FPG
Sbjct: 3 RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRPVSS 120
YVL K M + VYH +K+TPKV GFLG P P++D+E EHI+N + E A ++
Sbjct: 63 YVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNHKAEAEVAGKKAQIK 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+
Sbjct: 123 VDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177
>gi|56551620|ref|YP_162459.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|241761255|ref|ZP_04759343.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543194|gb|AAV89348.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|241374162|gb|EER63659.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 179
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K E++ R GL LV I +P+E+ V VR+G+KV ER+ FPG
Sbjct: 3 RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRPVSS 120
YVL K M + VYH +K+TPKV GFLG P P++D+E EHI+N + E A ++
Sbjct: 63 YVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNRKAEAEVAGKKAQIK 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+
Sbjct: 123 VDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177
>gi|84685454|ref|ZP_01013352.1| transcription termination/antitermination factor NusG
[Maritimibacter alkaliphilus HTCC2654]
gi|84666611|gb|EAQ13083.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2654]
Length = 177
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKTSVAEAGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVEEGVEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL Y QV K
Sbjct: 121 ITFEIGEKVAVTDGPFEGFDGMVEGVDEDNQRLKVSVSIFGRATPVELEYTQVSK 175
>gi|88812769|ref|ZP_01128015.1| transcription antitermination protein NusG [Nitrococcus mobilis
Nb-231]
gi|88790007|gb|EAR21128.1| transcription antitermination protein NusG [Nitrococcus mobilis
Nb-231]
Length = 177
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E + S+ R+ R G++ EI +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFENQVKRSLEERIKREGVESKFGEILVPTEEVVEMREGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MT++ +H ++D P+V+ F+G T + P+P++D+E E I+N+V +RP
Sbjct: 61 FPGYVLVQMEMTEETWHLVRDVPRVMAFIGGTSDRPAPISDAEAEQILNRVREGAERPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEVVRVVSGPFTDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 176
>gi|209520977|ref|ZP_03269713.1| NusG antitermination factor [Burkholderia sp. H160]
gi|209498579|gb|EDZ98698.1| NusG antitermination factor [Burkholderia sp. H160]
Length = 185
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ + +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQNQFGQILVPTEEVVEVKGGHKSVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|167587784|ref|ZP_02380172.1| NusG antitermination factor [Burkholderia ubonensis Bu]
gi|254253528|ref|ZP_04946846.1| transcription antitermination protein NusG [Burkholderia dolosa
AUO158]
gi|124896137|gb|EAY70017.1| transcription antitermination protein NusG [Burkholderia dolosa
AUO158]
gi|325529724|gb|EGD06581.1| transcription antitermination protein NusG [Burkholderia sp. TJI49]
Length = 185
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N P+P++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|297172380|gb|ADI23355.1| transcription antiterminator [uncultured Oceanospirillales
bacterium HF0770_27O18]
gi|297181153|gb|ADI17350.1| transcription antiterminator [uncultured Oceanospirillales
bacterium HF0070_21F08]
Length = 180
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 121/179 (67%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK S+ R+ + ++ L EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVKRSLEERIKLNSMEELFGEILVPTEEVVEMRAGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENP---SPVTDSEIEHIMNQVEAAVQR 116
FPGYVL+ M D +H +K+TPKV+GF+G +NP SP+T E + I+ +++ AV++
Sbjct: 61 FPGYVLVHMEMNDDSWHMVKETPKVMGFIGEDPKNPGRVSPITQKEADAILRRMDDAVEK 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P FE GE V V+DGPFA FNG+V+ V+ EKSR+HV V+IFGR TPVEL + QVEK
Sbjct: 121 PKPKTLFEAGEVVRVTDGPFADFNGVVEEVNYEKSRLHVAVLIFGRSTPVELEFGQVEK 179
>gi|28867842|ref|NP_790461.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato str. DC3000]
gi|66047787|ref|YP_237628.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae B728a]
gi|213969202|ref|ZP_03397340.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato T1]
gi|289675473|ref|ZP_06496363.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae FF5]
gi|301381709|ref|ZP_07230127.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato Max13]
gi|302130768|ref|ZP_07256758.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|28851078|gb|AAO54156.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato str. DC3000]
gi|63258494|gb|AAY39590.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae B728a]
gi|213925880|gb|EEB59437.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato T1]
gi|330879467|gb|EGH13616.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
gi|330899748|gb|EGH31167.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. japonica str. M301072PT]
gi|330940869|gb|EGH43828.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330966923|gb|EGH67183.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. actinidiae str. M302091]
gi|330969834|gb|EGH69900.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aceris str. M302273PT]
gi|331018148|gb|EGH98204.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 177
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|295677945|ref|YP_003606469.1| NusG antitermination factor [Burkholderia sp. CCGE1002]
gi|295437788|gb|ADG16958.1| NusG antitermination factor [Burkholderia sp. CCGE1002]
Length = 185
Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQEQFGQILVPTEEVVEVKGGHKSVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|70732893|ref|YP_262662.1| transcription antitermination protein NusG [Pseudomonas fluorescens
Pf-5]
gi|71734301|ref|YP_276718.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|257483173|ref|ZP_05637214.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289623861|ref|ZP_06456815.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289648954|ref|ZP_06480297.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298489108|ref|ZP_07007130.1| Transcription antitermination protein NusG [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|68347192|gb|AAY94798.1| transcription termination/antitermination factor NusG [Pseudomonas
fluorescens Pf-5]
gi|71554854|gb|AAZ34065.1| transcription termination/antitermination factor NusG [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298156420|gb|EFH97518.1| Transcription antitermination protein NusG [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|320322334|gb|EFW78428.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. glycinea str. B076]
gi|320331992|gb|EFW87928.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330869443|gb|EGH04152.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330879351|gb|EGH13500.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330988294|gb|EGH86397.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331012400|gb|EGH92456.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 177
Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|121997661|ref|YP_001002448.1| NusG antitermination factor [Halorhodospira halophila SL1]
gi|121589066|gb|ABM61646.1| transcription antitermination protein nusG [Halorhodospira
halophila SL1]
Length = 177
Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ YS EK+ S+ R+ R+G++ EI +P+E VV +R+G+K SER+F
Sbjct: 1 MALRWYVIHAYSGFEKQVQRSLQERIRRAGMEDKFGEILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+ P+V+GF+G + P+P++D E E I+++V ++P
Sbjct: 61 FPGYVLVQMELDDDTWHLVKEVPRVMGFIGGRPDRPAPISDREAEQILSRVREGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V+DGPF FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEIVRVTDGPFTDFNGAVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 176
>gi|83648864|ref|YP_437299.1| transcription antitermination protein NusG [Hahella chejuensis KCTC
2396]
gi|83636907|gb|ABC32874.1| transcription termination/antitermination factor NusG [Hahella
chejuensis KCTC 2396]
Length = 177
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RW++VQ YS EK + S+ R+ G++ EI +P+E VV +++G+K SER+F
Sbjct: 1 MSKRWFVVQAYSGFEKHVMRSLKERIVLKGMEDQFGEILVPTEEVVEMKEGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K T +V+GF+G T + P+P++D E E I+ +VE+ +P
Sbjct: 61 YPGYVLVQMEMNDDTWHLVKSTTRVLGFIGGTPDKPAPISDKEAEAILRRVESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEAGEVVRVIDGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVDLEFSQVEK 176
>gi|15599471|ref|NP_252965.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
PAO1]
gi|116052310|ref|YP_788844.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152987944|ref|YP_001346211.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
PA7]
gi|218889397|ref|YP_002438261.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
LESB58]
gi|254237135|ref|ZP_04930458.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
C3719]
gi|254242920|ref|ZP_04936242.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
2192]
gi|296387168|ref|ZP_06876667.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
PAb1]
gi|14423808|sp|Q9HWC4|NUSG_PSEAE RecName: Full=Transcription antitermination protein nusG
gi|9950494|gb|AAG07663.1|AE004843_5 transcription antitermination protein NusG [Pseudomonas aeruginosa
PAO1]
gi|115587531|gb|ABJ13546.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169066|gb|EAZ54577.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
C3719]
gi|126196298|gb|EAZ60361.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
2192]
gi|150963102|gb|ABR85127.1| transcription termination/antitermination factor NusG [Pseudomonas
aeruginosa PA7]
gi|218769620|emb|CAW25380.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
LESB58]
Length = 177
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+G T + P+P+TD E + I+ +V + +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|103486929|ref|YP_616490.1| NusG antitermination factor [Sphingopyxis alaskensis RB2256]
gi|98977006|gb|ABF53157.1| transcription antitermination protein nusG [Sphingopyxis alaskensis
RB2256]
Length = 178
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K +S+ R GL V + +P E V V++G+KV +ER+FFPG
Sbjct: 3 RWYIIHAYSGFENKVRDSVLAEAERMGLTDFVEAVEVPVETVTEVKRGKKVQAERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--V 121
YVL K MTD VYH +K+TPKV GFLG+ P ++++E I+N E A RP + V
Sbjct: 63 YVLAKLTMTDDVYHLVKNTPKVTGFLGSSGKPQAISEAEAARILNSKEEAAARPKTEIRV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E+G++V V +GPFASFNG+V+ +D +K+RV V V IFGR TPVEL + QVE++
Sbjct: 123 DYEIGDQVKVLEGPFASFNGVVEELDFDKARVKVSVSIFGRATPVELDFEQVERM 177
>gi|120553640|ref|YP_957991.1| transcription antitermination protein NusG [Marinobacter aquaeolei
VT8]
gi|120323489|gb|ABM17804.1| transcription antitermination protein nusG [Marinobacter aquaeolei
VT8]
Length = 177
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + ++ R++ G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLKERVALEGMEDKFGEILVPTEEVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K+TP+V+GF+G T + P+P+T+ E E I+ +VE+ +P
Sbjct: 61 YPGYVLVQMEMDDASWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEIVRVVEGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVELEFGQVEK 176
>gi|78064911|ref|YP_367680.1| transcription antitermination protein NusG [Burkholderia sp. 383]
gi|107024316|ref|YP_622643.1| transcription antitermination protein NusG [Burkholderia
cenocepacia AU 1054]
gi|115350309|ref|YP_772148.1| transcription antitermination protein NusG [Burkholderia ambifaria
AMMD]
gi|116688359|ref|YP_833982.1| transcription antitermination protein NusG [Burkholderia
cenocepacia HI2424]
gi|134294430|ref|YP_001118165.1| transcription antitermination protein NusG [Burkholderia
vietnamiensis G4]
gi|161523416|ref|YP_001578428.1| transcription antitermination protein NusG [Burkholderia
multivorans ATCC 17616]
gi|170701415|ref|ZP_02892373.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10]
gi|170731669|ref|YP_001763616.1| transcription antitermination protein NusG [Burkholderia
cenocepacia MC0-3]
gi|171319353|ref|ZP_02908463.1| NusG antitermination factor [Burkholderia ambifaria MEX-5]
gi|172059328|ref|YP_001806980.1| transcription antitermination protein NusG [Burkholderia ambifaria
MC40-6]
gi|189351811|ref|YP_001947439.1| transcription antitermination protein NusG [Burkholderia
multivorans ATCC 17616]
gi|206558628|ref|YP_002229388.1| transcription antitermination protein NusG [Burkholderia
cenocepacia J2315]
gi|221201552|ref|ZP_03574590.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2M]
gi|221207373|ref|ZP_03580383.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2]
gi|221213511|ref|ZP_03586486.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD1]
gi|254246607|ref|ZP_04939928.1| transcription antitermination protein NusG [Burkholderia
cenocepacia PC184]
gi|77965656|gb|ABB07036.1| transcription antitermination protein nusG [Burkholderia sp. 383]
gi|105894505|gb|ABF77670.1| transcription antitermination protein nusG [Burkholderia
cenocepacia AU 1054]
gi|115280297|gb|ABI85814.1| transcription antitermination protein nusG [Burkholderia ambifaria
AMMD]
gi|116646448|gb|ABK07089.1| transcription antitermination protein nusG [Burkholderia
cenocepacia HI2424]
gi|124871383|gb|EAY63099.1| transcription antitermination protein NusG [Burkholderia
cenocepacia PC184]
gi|134137587|gb|ABO53330.1| transcription antitermination protein nusG [Burkholderia
vietnamiensis G4]
gi|160340845|gb|ABX13931.1| NusG antitermination factor [Burkholderia multivorans ATCC 17616]
gi|169814911|gb|ACA89494.1| NusG antitermination factor [Burkholderia cenocepacia MC0-3]
gi|170133667|gb|EDT02037.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171095424|gb|EDT40396.1| NusG antitermination factor [Burkholderia ambifaria MEX-5]
gi|171991845|gb|ACB62764.1| NusG antitermination factor [Burkholderia ambifaria MC40-6]
gi|189335833|dbj|BAG44903.1| transcriptional antiterminator [Burkholderia multivorans ATCC
17616]
gi|198034665|emb|CAR50532.1| transcription antitermination protein NusG [Burkholderia
cenocepacia J2315]
gi|221166963|gb|EED99434.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD1]
gi|221172961|gb|EEE05398.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2]
gi|221178368|gb|EEE10777.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2M]
Length = 185
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N P+P++ E+E IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRSTPVELEFGQVEKV 185
>gi|262363486|gb|ACY60207.1| transcription antitermination protein [Yersinia pestis D106004]
Length = 181
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ YS E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAYSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|148555476|ref|YP_001263058.1| transcription antitermination protein nusG [Sphingomonas wittichii
RW1]
gi|148500666|gb|ABQ68920.1| transcription antitermination protein nusG [Sphingomonas wittichii
RW1]
Length = 179
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 123/176 (69%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K E+I +R GL+ LV + +P+E+V VR+G+K+ S+R+FFPG
Sbjct: 3 RWYIIHAYSGFENKVREAILADAARLGLEQLVEAVEVPTEKVTEVRRGKKITSDRKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVS--S 120
YVL K M D VYH +K+TPKV GFLG+ P P++++E I+N + EAA P +
Sbjct: 63 YVLAKLSMNDDVYHLVKNTPKVTGFLGSSGKPQPISEAEAARILNTKEEAAAAAPKTKLK 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G++V V DGPFASFNG+V+ +D ++SRV V V IFGR TPVEL + QVE++
Sbjct: 123 VDYEIGDQVKVLDGPFASFNGVVEELDFDRSRVKVSVSIFGRATPVELEFEQVERV 178
>gi|171462866|ref|YP_001796979.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192404|gb|ACB43365.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 190
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS EK + R++RSG+ I +PSE VV ++ G K SERRFFPG
Sbjct: 17 RWYVIHAYSGMEKSVKRDLEERIARSGMPEKFGRILVPSEEVVEIKSGTKSVSERRFFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ MTD+ +H +K+TPKV GF+G N PSP++ +E+ IM+Q++A V +P
Sbjct: 77 YVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVTKIMDQMQAGVDKPKPKTL 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 137 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEK 189
>gi|302189265|ref|ZP_07265938.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae 642]
Length = 177
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E + I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEADAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|255067813|ref|ZP_05319668.1| transcription termination/antitermination factor NusG [Neisseria
sicca ATCC 29256]
gi|298370604|ref|ZP_06981919.1| transcription termination/antitermination factor NusG [Neisseria
sp. oral taxon 014 str. F0314]
gi|255047904|gb|EET43368.1| transcription termination/antitermination factor NusG [Neisseria
sicca ATCC 29256]
gi|298281214|gb|EFI22704.1| transcription termination/antitermination factor NusG [Neisseria
sp. oral taxon 014 str. F0314]
Length = 177
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ GT P+P++ E + I+ QV + V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRSGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|193222431|emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas
arsenicoxydans]
Length = 192
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK + ++ R++R+G+ +I +P+E V+ V+ G+K SERRFFPG
Sbjct: 19 RWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFPG 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N P+P+ E++ IM Q++ V++P V
Sbjct: 79 YVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKVL 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 139 YEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192
>gi|330891943|gb|EGH24604.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. mori str. 301020]
Length = 177
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V +DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRATDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|126666825|ref|ZP_01737802.1| transcription antitermination protein NusG [Marinobacter sp. ELB17]
gi|126628870|gb|EAZ99490.1| transcription antitermination protein NusG [Marinobacter sp. ELB17]
Length = 177
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + ++ R++ +GL+ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLKERVALNGLEEQFGEILVPTEEVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ + D +H +K+TP+V+GF+G T E P+P+T+ E + I+ ++E+ +P
Sbjct: 61 YPGYVLVQMELEDATWHLVKNTPRVLGFIGGTKEKPAPITEKEADAILRRLESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEVVRVVEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176
>gi|104779743|ref|YP_606241.1| transcription antitermination protein NusG [Pseudomonas entomophila
L48]
gi|95108730|emb|CAK13424.1| transcription antitermination protein NusG [Pseudomonas entomophila
L48]
Length = 177
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177
>gi|187476522|ref|YP_784546.1| transcription antitermination protein NusG [Bordetella avium 197N]
gi|115421108|emb|CAJ47592.1| transcription antitermination protein [Bordetella avium 197N]
Length = 177
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG +G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|238765324|ref|ZP_04626250.1| Transcription antitermination protein nusG [Yersinia kristensenii
ATCC 33638]
gi|238696451|gb|EEP89242.1| Transcription antitermination protein nusG [Yersinia kristensenii
ATCC 33638]
Length = 181
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLNNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|261364713|ref|ZP_05977596.1| transcription termination/antitermination factor NusG [Neisseria
mucosa ATCC 25996]
gi|288567009|gb|EFC88569.1| transcription termination/antitermination factor NusG [Neisseria
mucosa ATCC 25996]
Length = 177
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ GT P+P++ E + I+ QV V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRTGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|332188803|ref|ZP_08390513.1| transcription termination/antitermination factor NusG [Sphingomonas
sp. S17]
gi|332011156|gb|EGI53251.1| transcription termination/antitermination factor NusG [Sphingomonas
sp. S17]
Length = 178
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K +SI +R GLDHLV +I +P+E V R+G+K+ ER+F PG
Sbjct: 3 RWYIIHAYSGFEGKVRDSIMAEATRLGLDHLVAQIEVPTETVTEARRGKKIAVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVL K M D+VYH +K+TPKV GFLG P +++SE ++N E A P V
Sbjct: 63 YVLAKLDMNDQVYHLVKNTPKVTGFLGAMGKPQAISESEATRMLNSKEEAAAAPKHKVKV 122
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E+G+ V V +GPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE+
Sbjct: 123 DYEIGDAVKVLEGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVER 176
>gi|312795756|ref|YP_004028678.1| transcription antitermination protein nusG [Burkholderia
rhizoxinica HKI 454]
gi|312167531|emb|CBW74534.1| Transcription antitermination protein nusG [Burkholderia
rhizoxinica HKI 454]
Length = 185
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ +I +P+E VV ++ G K +ERRFFPG
Sbjct: 12 RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHKSVTERRFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E++ IM+Q++ V++P
Sbjct: 72 YVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQEGVEKPRPKTL 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 132 FEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|319944817|ref|ZP_08019080.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lautropia mirabilis ATCC 51599]
gi|319741931|gb|EFV94355.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lautropia mirabilis ATCC 51599]
Length = 177
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK +I R+ R+G+ L +I +P+E VV ++ G++ +ERRF
Sbjct: 1 MSKRWYVVHAYSGMEKSVGRAIRERVERAGMQDLFGQILVPTEEVVEMKNGQRSITERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D +H +K+T KV GF+G +G P+ ++ +E++ IMNQ+ V++P
Sbjct: 61 FPGYVLVEMEMNDDTWHLVKNTNKVTGFVGGSGNRPAAISQAEVDKIMNQMAEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V V +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 KTLFEIGEMVRVKEGPFADFNGNVEEVNYEKSRLTVSVTIFGRATPVELEFGQVEKL 177
>gi|292492409|ref|YP_003527848.1| transcription termination/antitermination factor NusG
[Nitrosococcus halophilus Nc4]
gi|291581004|gb|ADE15461.1| transcription termination/antitermination factor NusG
[Nitrosococcus halophilus Nc4]
Length = 177
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E++ S+ R+ R GL +I +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSLEERIRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D+ +H ++D P+V+GF+ GT + P+P+TD+E E I+ +V ++P
Sbjct: 61 FPGYVLVQMEMSDETWHLVRDVPRVLGFIGGTSDKPAPITDAEAEKILERVREGAEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V +GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KILFEPGEMVRVVEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176
>gi|307823429|ref|ZP_07653658.1| NusG antitermination factor [Methylobacter tundripaludum SV96]
gi|307735414|gb|EFO06262.1| NusG antitermination factor [Methylobacter tundripaludum SV96]
Length = 177
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YSN E K +++ R+ R GL+ +I +P+E VV +R G++ SER+F
Sbjct: 1 MALRWYVVHAYSNFENKVKQALEERIKREGLEQYFGKILVPTEEVVEMRMGQQRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +KD P+V+GF+ GT + P+P+++ E I+N+VE V +P
Sbjct: 61 FPGYVLVQMDLTDETWHLVKDVPRVLGFIGGTSDRPAPISEKEAMAILNRVEDGVNKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPF FNG+V+ V+ EKS++ + V+IFGR T VEL + QVEK
Sbjct: 121 KTMFEAGEVIRVIDGPFKDFNGVVEEVNYEKSKIKISVLIFGRSTSVELGFGQVEK 176
>gi|238785545|ref|ZP_04629526.1| Transcription antitermination protein nusG [Yersinia bercovieri
ATCC 43970]
gi|238713530|gb|EEQ05561.1| Transcription antitermination protein nusG [Yersinia bercovieri
ATCC 43970]
Length = 181
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|26987183|ref|NP_742608.1| transcription antitermination protein NusG [Pseudomonas putida
KT2440]
gi|148545727|ref|YP_001265829.1| transcription antitermination protein NusG [Pseudomonas putida F1]
gi|167031488|ref|YP_001666719.1| transcription antitermination protein NusG [Pseudomonas putida
GB-1]
gi|325271153|ref|ZP_08137709.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51]
gi|24981819|gb|AAN66072.1|AE016236_6 transcription antitermination protein NusG [Pseudomonas putida
KT2440]
gi|148509785|gb|ABQ76645.1| transcription antitermination protein nusG [Pseudomonas putida F1]
gi|166857976|gb|ABY96383.1| NusG antitermination factor [Pseudomonas putida GB-1]
gi|324103705|gb|EGC00996.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51]
Length = 177
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177
>gi|290477021|ref|YP_003469933.1| transcription antitermination protein [Xenorhabdus bovienii
SS-2004]
gi|289176366|emb|CBJ83171.1| component in transcription antitermination [Xenorhabdus bovienii
SS-2004]
Length = 181
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLDGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IM++++ +P
Sbjct: 68 YVLVQMVMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMDRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|302877789|ref|YP_003846353.1| NusG antitermination factor [Gallionella capsiferriformans ES-2]
gi|302580578|gb|ADL54589.1| NusG antitermination factor [Gallionella capsiferriformans ES-2]
Length = 177
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS EK ++ R++R G+ +I +P E VV ++ G+KV SER+F
Sbjct: 1 MAMSWYVVHTYSQFEKSVSRALVERIAREGMQEKFGQILVPVEEVVELKGGQKVTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K+TPKV GFL G+ P+P+++ E+++IM Q++A V++P
Sbjct: 61 FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMRPTPISEKEVQNIMQQMQAGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPF F G+V+ V+ +K+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGESVRVKEGPFTDFTGMVEEVNYDKNKIRVAVTIFGRATPVELDFGQVEK 176
>gi|260577197|ref|ZP_05845173.1| NusG antitermination factor [Rhodobacter sp. SW2]
gi|259020577|gb|EEW23897.1| NusG antitermination factor [Rhodobacter sp. SW2]
Length = 178
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKTAVAEAGLQDEIEEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ MT+K YH I +V GFLG P + DSE+ I+N+VE ++ P +
Sbjct: 61 MPGYVLVRMEMTNKGYHLISSINRVTGFLGPQGKPQAMRDSEVNAILNRVEEGLEAPRNL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V VSDGPF F G+V++VDE SR+ V V IFGR TP+EL + QV K
Sbjct: 121 IRFEIGEQVQVSDGPFEGFTGMVEDVDEGHSRLKVTVSIFGRATPLELEFTQVTK 175
>gi|293602653|ref|ZP_06685095.1| transcription antitermination protein NusG [Achromobacter
piechaudii ATCC 43553]
gi|292818963|gb|EFF78002.1| transcription antitermination protein NusG [Achromobacter
piechaudii ATCC 43553]
Length = 177
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALVERIERAALQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG +G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|28899701|ref|NP_799306.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
RIMD 2210633]
gi|260878169|ref|ZP_05890524.1| transcription termination/antitermination factor NusG [Vibrio
parahaemolyticus AN-5034]
gi|262392942|ref|YP_003284796.1| transcription antitermination protein NusG [Vibrio sp. Ex25]
gi|269965855|ref|ZP_06179949.1| transcription antitermination protein NusG [Vibrio alginolyticus
40B]
gi|32129809|sp|Q87KP9|NUSG_VIBPA RecName: Full=Transcription antitermination protein nusG
gi|28807953|dbj|BAC61190.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
RIMD 2210633]
gi|262336536|gb|ACY50331.1| transcription antitermination protein NusG [Vibrio sp. Ex25]
gi|269829519|gb|EEZ83759.1| transcription antitermination protein NusG [Vibrio alginolyticus
40B]
gi|308090221|gb|EFO39916.1| transcription termination/antitermination factor NusG [Vibrio
parahaemolyticus AN-5034]
gi|328471078|gb|EGF41984.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
10329]
Length = 182
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|317494918|ref|ZP_07953328.1| transcription termination/antitermination factor NusG
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917106|gb|EFV38455.1| transcription termination/antitermination factor NusG
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 181
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|260774684|ref|ZP_05883589.1| transcription antitermination protein NusG [Vibrio coralliilyticus
ATCC BAA-450]
gi|260609403|gb|EEX35552.1| transcription antitermination protein NusG [Vibrio coralliilyticus
ATCC BAA-450]
Length = 182
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|22124394|ref|NP_667817.1| transcription antitermination protein NusG [Yersinia pestis KIM 10]
gi|45442869|ref|NP_994408.1| transcription antitermination protein NusG [Yersinia pestis biovar
Microtus str. 91001]
gi|51594633|ref|YP_068824.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis IP 32953]
gi|108809615|ref|YP_653531.1| transcription antitermination protein NusG [Yersinia pestis
Antiqua]
gi|108810380|ref|YP_646147.1| transcription antitermination protein NusG [Yersinia pestis
Nepal516]
gi|123440670|ref|YP_001004663.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145600993|ref|YP_001165069.1| transcription antitermination protein NusG [Yersinia pestis
Pestoides F]
gi|153949507|ref|YP_001402816.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis IP 31758]
gi|153997214|ref|ZP_02022321.1| transcription antitermination protein [Yersinia pestis CA88-4125]
gi|162421043|ref|YP_001607191.1| transcription antitermination protein NusG [Yersinia pestis Angola]
gi|165928331|ref|ZP_02224163.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165938150|ref|ZP_02226709.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. IP275]
gi|166012043|ref|ZP_02232941.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166214413|ref|ZP_02240448.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167402411|ref|ZP_02307871.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167422947|ref|ZP_02314700.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426816|ref|ZP_02318569.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|170022592|ref|YP_001719097.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis YPIII]
gi|186893634|ref|YP_001870746.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis PB1/+]
gi|218930757|ref|YP_002348632.1| transcription antitermination protein NusG [Yersinia pestis CO92]
gi|229837498|ref|ZP_04457660.1| transcription termination factor [Yersinia pestis Pestoides A]
gi|229839434|ref|ZP_04459593.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899996|ref|ZP_04515136.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900555|ref|ZP_04515681.1| transcription termination factor [Yersinia pestis Nepal516]
gi|238752784|ref|ZP_04614252.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC
43380]
gi|238760251|ref|ZP_04621395.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC
35236]
gi|238790611|ref|ZP_04634376.1| Transcription antitermination protein nusG [Yersinia frederiksenii
ATCC 33641]
gi|238794964|ref|ZP_04638561.1| Transcription antitermination protein nusG [Yersinia intermedia
ATCC 29909]
gi|270488911|ref|ZP_06205985.1| transcription termination/antitermination factor NusG [Yersinia
pestis KIM D27]
gi|294505420|ref|YP_003569482.1| transcription antitermination protein NusG [Yersinia pestis
Z176003]
gi|332159907|ref|YP_004296484.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|32129819|sp|Q8ZAP0|NUSG_YERPE RecName: Full=Transcription antitermination protein nusG
gi|21957175|gb|AAM84068.1|AE013648_10 component in transcription antitermination [Yersinia pestis KIM 10]
gi|45437735|gb|AAS63285.1| transcription antitermination protein [Yersinia pestis biovar
Microtus str. 91001]
gi|51587915|emb|CAH19518.1| transcription antitermination protein [Yersinia pseudotuberculosis
IP 32953]
gi|108774028|gb|ABG16547.1| transcription antitermination protein nusG [Yersinia pestis
Nepal516]
gi|108781528|gb|ABG15586.1| transcription antitermination protein nusG [Yersinia pestis
Antiqua]
gi|115349368|emb|CAL22339.1| transcription antitermination protein [Yersinia pestis CO92]
gi|122087631|emb|CAL10413.1| transcription antitermination protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145212689|gb|ABP42096.1| transcription antitermination protein nusG [Yersinia pestis
Pestoides F]
gi|149289322|gb|EDM39401.1| transcription antitermination protein [Yersinia pestis CA88-4125]
gi|152961002|gb|ABS48463.1| transcription termination/antitermination factor NusG [Yersinia
pseudotuberculosis IP 31758]
gi|162353858|gb|ABX87806.1| transcription termination/antitermination factor NusG [Yersinia
pestis Angola]
gi|165913811|gb|EDR32429.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. IP275]
gi|165919670|gb|EDR37003.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165989038|gb|EDR41339.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204417|gb|EDR48897.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166957158|gb|EDR55179.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167048191|gb|EDR59599.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167054198|gb|EDR64023.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|169749126|gb|ACA66644.1| NusG antitermination factor [Yersinia pseudotuberculosis YPIII]
gi|186696660|gb|ACC87289.1| NusG antitermination factor [Yersinia pseudotuberculosis PB1/+]
gi|229682375|gb|EEO78465.1| transcription termination factor [Yersinia pestis Nepal516]
gi|229686981|gb|EEO79057.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695800|gb|EEO85847.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229704186|gb|EEO91197.1| transcription termination factor [Yersinia pestis Pestoides A]
gi|238701515|gb|EEP94088.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC
35236]
gi|238708982|gb|EEQ01232.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC
43380]
gi|238721280|gb|EEQ12955.1| Transcription antitermination protein nusG [Yersinia frederiksenii
ATCC 33641]
gi|238725722|gb|EEQ17279.1| Transcription antitermination protein nusG [Yersinia intermedia
ATCC 29909]
gi|262367414|gb|ACY63971.1| transcription antitermination protein NusG [Yersinia pestis
D182038]
gi|270337415|gb|EFA48192.1| transcription termination/antitermination factor NusG [Yersinia
pestis KIM D27]
gi|294355879|gb|ADE66220.1| transcription antitermination protein NusG [Yersinia pestis
Z176003]
gi|318607543|emb|CBY29041.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. palearctica Y11]
gi|320013652|gb|ADV97223.1| transcription termination factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|325664137|gb|ADZ40781.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330863585|emb|CBX73697.1| transcription antitermination protein nusG [Yersinia enterocolitica
W22703]
Length = 181
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|170723918|ref|YP_001751606.1| transcription antitermination protein NusG [Pseudomonas putida
W619]
gi|169761921|gb|ACA75237.1| NusG antitermination factor [Pseudomonas putida W619]
Length = 177
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGNVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177
>gi|323498408|ref|ZP_08103405.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM
21326]
gi|323316550|gb|EGA69564.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM
21326]
Length = 182
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|33594732|ref|NP_882375.1| transcription antitermination protein NusG [Bordetella
parapertussis 12822]
gi|33564808|emb|CAE39750.1| transcription antitermination protein NusG [Bordetella
parapertussis]
Length = 177
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I+NQ+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREVEKILNQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GP A FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|145588230|ref|YP_001154827.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046636|gb|ABP33263.1| transcription antitermination protein nusG [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 190
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS EK + + R++RSG+ I +PSE VV ++ G K +ERRFFPG
Sbjct: 17 RWYVIHAYSGMEKSVKKGLEERIARSGMPEKFGRILVPSEEVVEIKSGAKSVTERRFFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ MTD+ +H +K+TPKV GF+G N PSP++ +E+ IM+Q++A V +P
Sbjct: 77 YVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVAKIMDQMQAGVDKPKPKTL 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG ++ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 137 FEVGEIVRVKEGPFVDFNGNIEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEKM 190
>gi|260432412|ref|ZP_05786383.1| transcription termination/antitermination factor NusG [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416240|gb|EEX09499.1| transcription termination/antitermination factor NusG [Silicibacter
lacuscaerulensis ITI-1157]
Length = 177
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V+SN EKK E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVFSNFEKKIAEQIRAAVAEQGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDKGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VDEE ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDEENQKLKVSVSIFGRETPVELDFTQVTK 175
>gi|326793546|ref|YP_004311366.1| NusG antitermination factor [Marinomonas mediterranea MMB-1]
gi|326544310|gb|ADZ89530.1| NusG antitermination factor [Marinomonas mediterranea MMB-1]
Length = 177
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ YS EK + ++ R+ + L EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVQAYSGYEKHVMRALTERVQLMSMQDLFGEILVPTEEVVEIRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K T +V+GF+G T + PSP+T E + I+ +V V +P
Sbjct: 61 YPGYVLVQMDMNDDSWHLVKGTSRVLGFIGGTADKPSPITQREADAILQRVNEGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEAGEVVRVNDGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176
>gi|300725138|ref|YP_003714466.1| transcription antitermination protein [Xenorhabdus nematophila ATCC
19061]
gi|297631683|emb|CBJ92396.1| component in transcription antitermination [Xenorhabdus nematophila
ATCC 19061]
Length = 181
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLQDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H +++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|56477582|ref|YP_159171.1| transcription antitermination protein NusG [Aromatoleum aromaticum
EbN1]
gi|56313625|emb|CAI08270.1| transcription antitermination protein [Aromatoleum aromaticum EbN1]
Length = 177
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY+V YS EK ++ R++RSG+ +I +P E VV ++ G+K SER+F
Sbjct: 1 MTKRWYVVHAYSGFEKSVQRALVDRINRSGMQDFFGQILVPVEEVVEMKSGQKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +K TPKV GF+ GT PSP+++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPSPISEKEVEKIMQQMQEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +E+GE V V +GPF F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLWELGEVVRVKEGPFTDFHGAVEDVNYDKSKLRVSVTIFGRATPVELDFSQVEK 176
>gi|300114748|ref|YP_003761323.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|300114760|ref|YP_003761335.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|299540685|gb|ADJ29002.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|299540697|gb|ADJ29014.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
Length = 177
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E++ S+ R+ R GL +I +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSMEERVRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +KD P+V+GF+ GT + P+P+T++E E I+ ++ ++P
Sbjct: 61 FPGYVLVQMEMDDETWHLVKDVPRVLGFIGGTSDKPAPITEAEAEKILERIREGAEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V++GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEMVRVTEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176
>gi|330814211|ref|YP_004358450.1| transcription antitermination protein NusG [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487306|gb|AEA81711.1| transcription antitermination protein NusG [Candidatus Pelagibacter
sp. IMCC9063]
Length = 175
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 121/173 (69%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIVQ YS EKK E I L ++ L ++ +P++ V ++KG+K ++++FPG
Sbjct: 3 KWYIVQSYSGFEKKVSEQIQEELDKADLSDHFDQVLVPTQDVTEIKKGKKTIVKKKYFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL K +MTD++YH IKD KV GFLG PSP+ + E++ I+ +E ++ P SSV F
Sbjct: 63 YVLAKMIMTDQIYHLIKDLKKVSGFLGPQGKPSPIHEDEVQKILGNMEESISNPTSSVIF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GE+V VSDGPFASFNG+V+ +DE+KSR+ V V IFGR TPV+L Y QVEK+
Sbjct: 123 TIGEQVKVSDGPFASFNGLVEEIDEDKSRLKVSVSIFGRPTPVDLDYAQVEKL 175
>gi|261254083|ref|ZP_05946656.1| transcription antitermination protein NusG [Vibrio orientalis CIP
102891]
gi|323492149|ref|ZP_08097310.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG
20546]
gi|260937474|gb|EEX93463.1| transcription antitermination protein NusG [Vibrio orientalis CIP
102891]
gi|323313600|gb|EGA66703.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG
20546]
Length = 182
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD +KSRV V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVTDGPFADFNGTVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEKL 181
>gi|238756065|ref|ZP_04617388.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC
29473]
gi|238705732|gb|EEP98126.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC
29473]
Length = 181
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G + SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLQDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|117619084|ref|YP_858461.1| transcription termination/antitermination factor NusG [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|330831432|ref|YP_004394384.1| transcription termination/antitermination factor NusG [Aeromonas
veronii B565]
gi|117560491|gb|ABK37439.1| transcription termination/antitermination factor NusG [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|328806568|gb|AEB51767.1| transcription termination/antitermination factor NusG [Aeromonas
veronii B565]
Length = 183
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ + E+ +P+E VV +R G+K SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M + +H +++ P+V+GF+G T + P+P++D E + I+N+++ A +P
Sbjct: 70 YVLVQMIMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKTL 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 130 FEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182
>gi|283836718|ref|ZP_06356459.1| transcription termination/antitermination factor NusG [Citrobacter
youngae ATCC 29220]
gi|291067265|gb|EFE05374.1| transcription termination/antitermination factor NusG [Citrobacter
youngae ATCC 29220]
Length = 181
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|260770575|ref|ZP_05879507.1| transcription antitermination protein NusG [Vibrio furnissii CIP
102972]
gi|260614405|gb|EEX39592.1| transcription antitermination protein NusG [Vibrio furnissii CIP
102972]
gi|315178369|gb|ADT85283.1| transcription antiterminator [Vibrio furnissii NCTC 11218]
Length = 182
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 FEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|308188903|ref|YP_003933034.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
gi|308059413|gb|ADO11585.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
Length = 181
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180
>gi|308047968|ref|YP_003911534.1| transcription antitermination protein nusG [Ferrimonas balearica
DSM 9799]
gi|307630158|gb|ADN74460.1| transcription antitermination protein nusG [Ferrimonas balearica
DSM 9799]
Length = 181
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEARVAQSLKEHIQMHGMEEFFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D+ +H +++ P+V+GF+G T + P+P+T+ E I+N+++ A + P
Sbjct: 68 YVLVQMVMNDQSWHLVRNVPRVMGFIGGTSDRPAPITEKEANAILNRLQEATESPRHRTI 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 128 FEPGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVMIFGRSTPVELDFGQVEK 180
>gi|145297373|ref|YP_001140214.1| transcription termination/antitermination factor NusG [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142850145|gb|ABO88466.1| transcription termination/antitermination factor NusG [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 183
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ + E+ +P+E VV +R G+K SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M + +H +++ P+V+GF+G T + P+P++D E + I+N+++ A +P
Sbjct: 70 YVLVQMLMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKTL 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 130 FEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182
>gi|330444936|ref|ZP_08308590.1| transcription termination/antitermination factor NusG
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328493054|dbj|GAA03087.1| transcription termination/antitermination factor NusG
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 181
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E VV VR G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D+ +H ++ P+V+GF+G T + P+P++D E + I+N+++ A + PV
Sbjct: 68 YVLVNMVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKTV 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG +++VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEVVRVTDGPFADFNGTIESVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180
>gi|317046439|ref|YP_004114087.1| NusG antitermination factor [Pantoea sp. At-9b]
gi|316948056|gb|ADU67531.1| NusG antitermination factor [Pantoea sp. At-9b]
Length = 181
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|54310503|ref|YP_131523.1| transcription antitermination protein NusG [Photobacterium
profundum SS9]
gi|46914946|emb|CAG21721.1| putative transcription antiterminator protein [Photobacterium
profundum SS9]
Length = 181
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEDYFDEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D+ +H ++ P+V+GF+G T + P+P++D E + I+N+++ A + PV
Sbjct: 68 YVLVQMVMNDQTWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKTV 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V++VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEVVRVTDGPFADFNGVVEHVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180
>gi|253987827|ref|YP_003039183.1| transcription antitermination protein NusG [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253779277|emb|CAQ82438.1| transcription antitermination protein [Photorhabdus asymbiotica]
Length = 181
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181
>gi|238798658|ref|ZP_04642132.1| Transcription antitermination protein nusG [Yersinia mollaretii
ATCC 43969]
gi|238717476|gb|EEQ09318.1| Transcription antitermination protein nusG [Yersinia mollaretii
ATCC 43969]
Length = 181
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|197286619|ref|YP_002152491.1| transcription antitermination protein NusG [Proteus mirabilis
HI4320]
gi|227355188|ref|ZP_03839597.1| transcription antitermination protein [Proteus mirabilis ATCC
29906]
gi|194684106|emb|CAR45505.1| transcription antitermination protein [Proteus mirabilis HI4320]
gi|227164697|gb|EEI49551.1| transcription antitermination protein [Proteus mirabilis ATCC
29906]
Length = 181
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLNEMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H +++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|146309859|ref|YP_001174933.1| transcription antitermination protein NusG [Enterobacter sp. 638]
gi|145316735|gb|ABP58882.1| transcription antitermination protein nusG [Enterobacter sp. 638]
Length = 181
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFAQVEK 180
>gi|183597452|ref|ZP_02958945.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827]
gi|188023201|gb|EDU61241.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827]
Length = 181
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLHGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 128 FEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181
>gi|157368521|ref|YP_001476510.1| transcription antitermination protein NusG [Serratia proteamaculans
568]
gi|157320285|gb|ABV39382.1| NusG antitermination factor [Serratia proteamaculans 568]
Length = 181
Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREYIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|237727884|ref|ZP_04558365.1| transcription antitermination protein NusG [Citrobacter sp. 30_2]
gi|226910441|gb|EEH96359.1| transcription antitermination protein NusG [Citrobacter sp. 30_2]
Length = 181
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|146308935|ref|YP_001189400.1| transcription antitermination protein NusG [Pseudomonas mendocina
ymp]
gi|145577136|gb|ABP86668.1| transcription antitermination protein nusG [Pseudomonas mendocina
ymp]
Length = 177
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H IKDTP+V+GF+ GT + P+P+T+ E E I+ +V + +P
Sbjct: 61 FPGYVLVQMEMNEATWHLIKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEMVRVVDGPFADFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 176
>gi|329296854|ref|ZP_08254190.1| transcription antitermination protein NusG [Plautia stali symbiont]
Length = 181
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEARVAKSLQEHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|292486722|ref|YP_003529592.1| transcription antitermination protein nusG [Erwinia amylovora
CFBP1430]
gi|292897955|ref|YP_003537324.1| transcription antitermination protein [Erwinia amylovora ATCC
49946]
gi|291197803|emb|CBJ44898.1| transcription antitermination protein [Erwinia amylovora ATCC
49946]
gi|291552139|emb|CBA19176.1| Transcription antitermination protein nusG [Erwinia amylovora
CFBP1430]
Length = 181
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|312170787|emb|CBX79048.1| Transcription antitermination protein nusG [Erwinia amylovora ATCC
BAA-2158]
Length = 181
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGMVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|293394017|ref|ZP_06638321.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Serratia odorifera DSM 4582]
gi|291423457|gb|EFE96682.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Serratia odorifera DSM 4582]
Length = 181
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|172087775|ref|YP_205804.2| transcription termination factor NusG [Vibrio fischeri ES114]
gi|197335330|ref|YP_002157209.1| transcription termination/antitermination factor NusG [Vibrio
fischeri MJ11]
gi|171902362|gb|AAW86916.2| transcription termination factor NusG [Vibrio fischeri ES114]
gi|197316820|gb|ACH66267.1| transcription termination/antitermination factor NusG [Vibrio
fischeri MJ11]
Length = 181
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVSQSLREHIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEQASEAPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEAGEVVRVTEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFSQVEK 180
>gi|262277083|ref|ZP_06054876.1| transcription termination/antitermination factor NusG [alpha
proteobacterium HIMB114]
gi|262224186|gb|EEY74645.1| transcription termination/antitermination factor NusG [alpha
proteobacterium HIMB114]
Length = 174
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 120/173 (69%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIVQ +++ EKK E I L ++ L EI +P++ V ++KG++ ++++FPG
Sbjct: 2 KWYIVQAHASAEKKLSEQIKEELEKADLGSKFGEILVPTQDVTEIKKGKRSVVKKKYFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K MT+ VYH IK KV GFLG PSP+++ E+ I+ +E +V P SS+ F
Sbjct: 62 YILVKLDMTNDVYHLIKSLKKVSGFLGPQGKPSPISEEEVNKIVGNMEESVANPSSSITF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VGE+V V DGPFASFNG ++ +DE+KSR+ V V IFGR TPV+L Y+QVEK+
Sbjct: 122 QVGEQVKVCDGPFASFNGSIEEIDEDKSRLKVSVSIFGRPTPVDLDYSQVEKV 174
>gi|320540639|ref|ZP_08040289.1| transcription termination factor [Serratia symbiotica str. Tucson]
gi|320029570|gb|EFW11599.1| transcription termination factor [Serratia symbiotica str. Tucson]
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLYDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|300714842|ref|YP_003739645.1| Transcription antitermination protein [Erwinia billingiae Eb661]
gi|299060678|emb|CAX57785.1| Transcription antitermination protein [Erwinia billingiae Eb661]
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMLMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|113869449|ref|YP_727938.1| transcription antitermination protein NusG [Ralstonia eutropha H16]
gi|113528225|emb|CAJ94570.1| transcription antitermination protein [Ralstonia eutropha H16]
Length = 193
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFPG
Sbjct: 20 RWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFPG 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E++ IM Q++ V++P
Sbjct: 80 YVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTL 139
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 FEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193
>gi|332091145|gb|EGI96235.1| transcription termination/antitermination factor NusG [Shigella
dysenteriae 155-74]
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|73542878|ref|YP_297398.1| transcription antitermination protein NusG [Ralstonia eutropha
JMP134]
gi|72120291|gb|AAZ62554.1| transcription antitermination protein nusG [Ralstonia eutropha
JMP134]
Length = 193
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFPG
Sbjct: 20 RWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFPG 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E++ IM Q++ V++P
Sbjct: 80 YVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTL 139
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 FEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193
>gi|85058107|ref|YP_453809.1| transcription antitermination protein NusG [Sodalis glossinidius
str. 'morsitans']
gi|84778627|dbj|BAE73404.1| transcription antitermination protein [Sodalis glossinidius str.
'morsitans']
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|194291040|ref|YP_002006947.1| transcription antitermination protein nusg [Cupriavidus taiwanensis
LMG 19424]
gi|193224875|emb|CAQ70886.1| transcription termination factor [Cupriavidus taiwanensis LMG
19424]
Length = 193
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFPG
Sbjct: 20 RWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFPG 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E++ IM Q++ V++P
Sbjct: 80 YVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTL 139
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 FEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193
>gi|34499653|ref|NP_903868.1| transcription antitermination protein NusG [Chromobacterium
violaceum ATCC 12472]
gi|34105503|gb|AAQ61858.1| transcription antitermination protein NusG [Chromobacterium
violaceum ATCC 12472]
Length = 177
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK +++ R+ RS + +I +P E VV V+ GRK +ER+F
Sbjct: 1 MAKRWYVVHAYSGFEKSVQKALRERIERSDIADQFGQILVPVEEVVDVKNGRKSITERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD +H +K TPKV GF+G T P+P++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLVEMEMTDDTWHLVKSTPKVTGFVGGTANRPAPISKKEVEAIMQQMQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V DGPF FNG V V+ E++++ V V IFGR TPVEL ++QVEK+
Sbjct: 121 KVLFEVGEKVRVIDGPFNDFNGSVDEVNYERNKLRVSVQIFGRDTPVELEFSQVEKL 177
>gi|254785051|ref|YP_003072479.1| transcription termination/antitermination factor NusG
[Teredinibacter turnerae T7901]
gi|237686030|gb|ACR13294.1| transcription termination/antitermination factor NusG
[Teredinibacter turnerae T7901]
Length = 177
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKKVATALKERIELYGMQDSFGEVLVPTEEVVEMRGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+ G + P+P+TD E E I+ +V+ + +P
Sbjct: 61 FPGYVLVQMELNDDAWHLVKETPRVMGFIGGKADKPAPITDKEAELILQRVDDSADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176
>gi|269962515|ref|ZP_06176863.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3]
gi|269832710|gb|EEZ86821.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3]
Length = 182
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHAMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|291615763|ref|YP_003518505.1| NusG [Pantoea ananatis LMG 20103]
gi|304399298|ref|ZP_07381163.1| NusG antitermination factor [Pantoea sp. aB]
gi|291150793|gb|ADD75377.1| NusG [Pantoea ananatis LMG 20103]
gi|304353154|gb|EFM17536.1| NusG antitermination factor [Pantoea sp. aB]
gi|327396029|dbj|BAK13451.1| transcription antitermination protein NusG [Pantoea ananatis
AJ13355]
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180
>gi|37524443|ref|NP_927787.1| transcription antitermination protein NusG [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36783867|emb|CAE12729.1| transcription antitermination factor [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 181
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|254282245|ref|ZP_04957213.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR51-B]
gi|219678448|gb|EED34797.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR51-B]
Length = 177
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V +S EKK ++ R+ R G+ EI +P+E VV ++ G+K SER+F
Sbjct: 1 MALRWYVVHAFSQYEKKVCLALKERIERYGMQDRFGEIIVPTEEVVEMKGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + ++ +H +K+TP+V+GF+G T + P+P+T+ E + I+ +VEA V P
Sbjct: 61 FPGYVLVQMELDEETWHLVKETPRVLGFIGGTADQPAPITEKEAQAILQRVEAGVDAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|50119178|ref|YP_048345.1| transcription antitermination protein NusG [Pectobacterium
atrosepticum SCRI1043]
gi|227115002|ref|ZP_03828658.1| transcription antitermination protein NusG [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227328359|ref|ZP_03832383.1| transcription antitermination protein NusG [Pectobacterium
carotovorum subsp. carotovorum WPP14]
gi|253686606|ref|YP_003015796.1| NusG antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|261819561|ref|YP_003257667.1| transcription antitermination protein NusG [Pectobacterium wasabiae
WPP163]
gi|49609704|emb|CAG73137.1| transcription antitermination protein [Pectobacterium atrosepticum
SCRI1043]
gi|251753184|gb|ACT11260.1| NusG antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|261603574|gb|ACX86060.1| NusG antitermination factor [Pectobacterium wasabiae WPP163]
Length = 181
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|270265419|ref|ZP_06193678.1| transcription antitermination protein NusG [Serratia odorifera
4Rx13]
gi|270040612|gb|EFA13717.1| transcription antitermination protein NusG [Serratia odorifera
4Rx13]
Length = 181
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|192359543|ref|YP_001981196.1| transcription termination/antitermination factor NusG [Cellvibrio
japonicus Ueda107]
gi|190685708|gb|ACE83386.1| transcription termination/antitermination factor NusG [Cellvibrio
japonicus Ueda107]
Length = 177
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK S+ R++ G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKKVAASLRERVALHGMEDSFGEILVPTEEVVEMRGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +KDTP+V+GF+ G + P+P+T+ E E I+ +V+ ++++P
Sbjct: 61 FPGYVLVQMELNDDTWHLVKDTPRVMGFIGGKADQPAPITEKEAEAILRRVDDSMEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ +K+R+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKNRLRVAVLIFGRSTPVELEFGQVEK 176
>gi|94312270|ref|YP_585480.1| transcription antitermination protein NusG [Cupriavidus
metallidurans CH34]
gi|93356122|gb|ABF10211.1| transcription termination factor [Cupriavidus metallidurans CH34]
Length = 193
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFPG
Sbjct: 20 RWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFPG 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N PSP++ E++ IM Q++ V++P
Sbjct: 80 YVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTL 139
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 FEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 193
>gi|16762305|ref|NP_457922.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16767402|ref|NP_463017.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|26250751|ref|NP_756791.1| transcription antitermination protein NusG [Escherichia coli
CFT073]
gi|29143793|ref|NP_807135.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|62182602|ref|YP_219019.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|91212813|ref|YP_542799.1| transcription antitermination protein NusG [Escherichia coli UTI89]
gi|110644317|ref|YP_672047.1| transcription antitermination protein NusG [Escherichia coli 536]
gi|117626246|ref|YP_859569.1| transcription antitermination protein NusG [Escherichia coli APEC
O1]
gi|152972839|ref|YP_001337985.1| transcription antitermination protein NusG [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156935821|ref|YP_001439737.1| transcription antitermination protein NusG [Cronobacter sakazakii
ATCC BAA-894]
gi|161505371|ref|YP_001572483.1| transcription antitermination protein NusG [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161617284|ref|YP_001591249.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167554342|ref|ZP_02348083.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167995347|ref|ZP_02576437.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168239843|ref|ZP_02664901.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168245301|ref|ZP_02670233.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168264792|ref|ZP_02686765.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168467920|ref|ZP_02701757.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|170770133|ref|ZP_02904586.1| transcription termination/antitermination factor NusG [Escherichia
albertii TW07627]
gi|191172735|ref|ZP_03034273.1| transcription termination/antitermination factor NusG [Escherichia
coli F11]
gi|194442714|ref|YP_002043400.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194447628|ref|YP_002048135.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469896|ref|ZP_03075880.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194735416|ref|YP_002117051.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249353|ref|YP_002149059.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|198241913|ref|YP_002218065.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200388673|ref|ZP_03215285.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205354449|ref|YP_002228250.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207859326|ref|YP_002245977.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213022866|ref|ZP_03337313.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163867|ref|ZP_03349577.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213417733|ref|ZP_03350853.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213425733|ref|ZP_03358483.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213585780|ref|ZP_03367606.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213623116|ref|ZP_03375899.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213650883|ref|ZP_03380936.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213852740|ref|ZP_03382272.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|215489314|ref|YP_002331745.1| transcription antitermination protein NusG [Escherichia coli
O127:H6 str. E2348/69]
gi|218561048|ref|YP_002393961.1| transcription antitermination protein NusG [Escherichia coli S88]
gi|218692263|ref|YP_002400475.1| transcription antitermination protein NusG [Escherichia coli ED1a]
gi|224585690|ref|YP_002639489.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|227885489|ref|ZP_04003294.1| transcription antitermination protein NusG [Escherichia coli 83972]
gi|237702749|ref|ZP_04533230.1| transcription antitermination protein nusG [Escherichia sp.
3_2_53FAA]
gi|238892452|ref|YP_002917186.1| transcription antitermination protein NusG [Klebsiella pneumoniae
NTUH-K2044]
gi|238913727|ref|ZP_04657564.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|262043786|ref|ZP_06016888.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|289826708|ref|ZP_06545673.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|300979572|ref|ZP_07174615.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 45-1]
gi|300985575|ref|ZP_07177491.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 200-1]
gi|301047715|ref|ZP_07194775.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 185-1]
gi|306811997|ref|ZP_07446205.1| transcription antitermination protein NusG [Escherichia coli NC101]
gi|311281468|ref|YP_003943699.1| NusG antitermination factor [Enterobacter cloacae SCF1]
gi|312965365|ref|ZP_07779598.1| transcription termination/antitermination factor NusG [Escherichia
coli 2362-75]
gi|330004995|ref|ZP_08305079.1| transcription termination/antitermination factor NusG [Klebsiella
sp. MS 92-3]
gi|331649835|ref|ZP_08350913.1| transcription termination/antitermination factor NusG [Escherichia
coli M605]
gi|331660541|ref|ZP_08361474.1| transcription termination/antitermination factor NusG [Escherichia
coli TA206]
gi|88914910|sp|P0AA03|NUSG_SALTI RecName: Full=Transcription antitermination protein nusG
gi|90110822|sp|P0AA01|NUSG_ECOL6 RecName: Full=Transcription antitermination protein nusG
gi|90110823|sp|P0AA02|NUSG_SALTY RecName: Full=Transcription antitermination protein nusG
gi|25299619|pir||AB0934 transcription antitermination protein STY3737 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|26111182|gb|AAN83365.1|AE016770_165 Transcription antitermination protein nusG [Escherichia coli
CFT073]
gi|6960335|gb|AAF33495.1| 99% identity over 181 amino acids with E. coli transcription
antitermination factor (NUSG) (SW:P16921) [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|16422705|gb|AAL22976.1| component in transcription antitermination [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16504609|emb|CAD09492.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139428|gb|AAO70995.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62130235|gb|AAX67938.1| component in transcription antitermination [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|91074387|gb|ABE09268.1| transcription antitermination protein [Escherichia coli UTI89]
gi|110345909|gb|ABG72146.1| transcription antitermination protein NusG [Escherichia coli 536]
gi|115515370|gb|ABJ03445.1| transcription antitermination protein NusG [Escherichia coli APEC
O1]
gi|150957688|gb|ABR79718.1| transcription antitermination protein NusG [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156534075|gb|ABU78901.1| hypothetical protein ESA_03697 [Cronobacter sakazakii ATCC BAA-894]
gi|160866718|gb|ABX23341.1| hypothetical protein SARI_03516 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161366648|gb|ABX70416.1| hypothetical protein SPAB_05135 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|170121015|gb|EDS89946.1| transcription termination/antitermination factor NusG [Escherichia
albertii TW07627]
gi|190907039|gb|EDV66640.1| transcription termination/antitermination factor NusG [Escherichia
coli F11]
gi|194401377|gb|ACF61599.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194405932|gb|ACF66151.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456260|gb|EDX45099.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194710918|gb|ACF90139.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195629016|gb|EDX48408.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197213056|gb|ACH50453.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197287542|gb|EDY26935.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197936429|gb|ACH73762.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199605771|gb|EDZ04316.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205274230|emb|CAR39249.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205321448|gb|EDZ09287.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205326985|gb|EDZ13749.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205335974|gb|EDZ22738.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205346818|gb|EDZ33449.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206711129|emb|CAR35503.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|215267386|emb|CAS11837.1| transcription termination factor [Escherichia coli O127:H6 str.
E2348/69]
gi|218367817|emb|CAR05612.1| transcription termination factor [Escherichia coli S88]
gi|218429827|emb|CAR10653.1| transcription termination factor [Escherichia coli ED1a]
gi|222035693|emb|CAP78438.1| Transcription antitermination protein nusG [Escherichia coli LF82]
gi|224470218|gb|ACN48048.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|226903062|gb|EEH89321.1| transcription antitermination protein nusG [Escherichia sp.
3_2_53FAA]
gi|227837563|gb|EEJ48029.1| transcription antitermination protein NusG [Escherichia coli 83972]
gi|238544768|dbj|BAH61119.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259038873|gb|EEW40042.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|261249252|emb|CBG27114.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996446|gb|ACY91331.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|281181046|dbj|BAI57376.1| transcription antitermination protein [Escherichia coli SE15]
gi|294493401|gb|ADE92157.1| transcription termination/antitermination factor NusG [Escherichia
coli IHE3034]
gi|300300400|gb|EFJ56785.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 185-1]
gi|300306521|gb|EFJ61041.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 200-1]
gi|300409476|gb|EFJ93014.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 45-1]
gi|301160644|emb|CBW20175.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|305854602|gb|EFM55038.1| transcription antitermination protein NusG [Escherichia coli NC101]
gi|307556125|gb|ADN48900.1| transcription antitermination protein NusG [Escherichia coli ABU
83972]
gi|307628401|gb|ADN72705.1| transcription antitermination protein NusG [Escherichia coli UM146]
gi|308750663|gb|ADO50415.1| NusG antitermination factor [Enterobacter cloacae SCF1]
gi|312290039|gb|EFR17926.1| transcription termination/antitermination factor NusG [Escherichia
coli 2362-75]
gi|312915253|dbj|BAJ39227.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|312948556|gb|ADR29383.1| transcription antitermination protein NusG [Escherichia coli O83:H1
str. NRG 857C]
gi|315288350|gb|EFU47748.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 110-3]
gi|315294336|gb|EFU53687.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 153-1]
gi|315300755|gb|EFU59980.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 16-3]
gi|320088579|emb|CBY98338.1| Transcription antitermination protein nusG [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|320197123|gb|EFW71741.1| Transcription antitermination protein NusG [Escherichia coli
WV_060327]
gi|321223348|gb|EFX48415.1| Transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322616258|gb|EFY13168.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322617299|gb|EFY14201.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625929|gb|EFY22744.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626673|gb|EFY23475.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631508|gb|EFY28265.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635221|gb|EFY31939.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642612|gb|EFY39206.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646785|gb|EFY43289.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650784|gb|EFY47177.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322655917|gb|EFY52218.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657316|gb|EFY53595.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322665578|gb|EFY61763.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669761|gb|EFY65906.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322670960|gb|EFY67092.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322679216|gb|EFY75269.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322679374|gb|EFY75421.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322688141|gb|EFY84105.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322717098|gb|EFZ08669.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323132483|gb|ADX19913.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323190161|gb|EFZ75439.1| transcription termination/antitermination factor NusG [Escherichia
coli RN587/1]
gi|323193409|gb|EFZ78619.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200671|gb|EFZ85744.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202160|gb|EFZ87216.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209271|gb|EFZ94206.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211596|gb|EFZ96433.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323218066|gb|EGA02779.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221355|gb|EGA05777.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225718|gb|EGA09939.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230994|gb|EGA15111.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235776|gb|EGA19858.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240090|gb|EGA24136.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242577|gb|EGA26599.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249715|gb|EGA33622.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252598|gb|EGA36439.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256908|gb|EGA40620.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262070|gb|EGA45634.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323263925|gb|EGA47439.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323268462|gb|EGA51932.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323948846|gb|EGB44743.1| transcription termination/antitermination protein NusG [Escherichia
coli H252]
gi|323953805|gb|EGB49612.1| transcription termination/antitermination protein NusG [Escherichia
coli H263]
gi|324009471|gb|EGB78690.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 57-2]
gi|324015277|gb|EGB84496.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 60-1]
gi|326625858|gb|EGE32203.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326629582|gb|EGE35925.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|328536459|gb|EGF62807.1| transcription termination/antitermination factor NusG [Klebsiella
sp. MS 92-3]
gi|330908299|gb|EGH36818.1| transcription antitermination protein NusG [Escherichia coli AA86]
gi|331041301|gb|EGI13453.1| transcription termination/antitermination factor NusG [Escherichia
coli M605]
gi|331052324|gb|EGI24362.1| transcription termination/antitermination factor NusG [Escherichia
coli TA206]
Length = 181
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|77462246|ref|YP_351750.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
2.4.1]
gi|126461108|ref|YP_001042222.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|126461122|ref|YP_001042236.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|221638100|ref|YP_002524362.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
KD131]
gi|77386664|gb|ABA77849.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
2.4.1]
gi|126102772|gb|ABN75450.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|126102786|gb|ABN75464.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
ATCC 17029]
gi|221158881|gb|ACL99860.1| Transcription antitermination protein nusG [Rhodobacter sphaeroides
KD131]
Length = 177
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+++ YH I +V GFLG P P+ DSE+ I+N+VE +P S
Sbjct: 61 MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +++GE V V+DGPF F+G+V++VDEE SR+ V V IFGR TPVEL + QV K
Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175
>gi|27364611|ref|NP_760139.1| transcription antitermination protein NusG [Vibrio vulnificus
CMCP6]
gi|37681348|ref|NP_935957.1| transcription antitermination protein NusG [Vibrio vulnificus
YJ016]
gi|320155005|ref|YP_004187384.1| transcription antitermination protein NusG [Vibrio vulnificus
MO6-24/O]
gi|32129818|sp|Q8DD25|NUSG_VIBVU RecName: Full=Transcription antitermination protein nusG
gi|27360730|gb|AAO09666.1| transcription termination/antitermination factor NusG [Vibrio
vulnificus CMCP6]
gi|37200099|dbj|BAC95928.1| transcription antiterminator [Vibrio vulnificus YJ016]
gi|319930317|gb|ADV85181.1| transcription antitermination protein NusG [Vibrio vulnificus
MO6-24/O]
Length = 182
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHGMEEYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P++D E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEADAILNRLEKASEAPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEVGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|15804572|ref|NP_290613.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 EDL933]
gi|15834159|ref|NP_312932.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. Sakai]
gi|16131812|ref|NP_418409.1| transcription termination factor [Escherichia coli str. K-12
substr. MG1655]
gi|24115267|ref|NP_709777.1| transcription antitermination protein NusG [Shigella flexneri 2a
str. 301]
gi|30064735|ref|NP_838906.1| transcription antitermination protein NusG [Shigella flexneri 2a
str. 2457T]
gi|74314476|ref|YP_312895.1| transcription antitermination protein NusG [Shigella sonnei Ss046]
gi|82546324|ref|YP_410271.1| transcription antitermination protein NusG [Shigella boydii Sb227]
gi|82778843|ref|YP_405192.1| transcription antitermination protein NusG [Shigella dysenteriae
Sd197]
gi|89110057|ref|AP_003837.1| transcription termination factor [Escherichia coli str. K-12
substr. W3110]
gi|110807832|ref|YP_691352.1| transcription antitermination protein NusG [Shigella flexneri 5
str. 8401]
gi|157154871|ref|YP_001465473.1| transcription antitermination protein NusG [Escherichia coli
E24377A]
gi|157163450|ref|YP_001460768.1| transcription antitermination protein NusG [Escherichia coli HS]
gi|168759202|ref|ZP_02784209.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4401]
gi|168771452|ref|ZP_02796459.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4486]
gi|168780365|ref|ZP_02805372.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4076]
gi|168790340|ref|ZP_02815347.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC869]
gi|170022015|ref|YP_001726969.1| transcription antitermination protein NusG [Escherichia coli ATCC
8739]
gi|170083442|ref|YP_001732762.1| transcription termination factor [Escherichia coli str. K-12
substr. DH10B]
gi|170682823|ref|YP_001746366.1| transcription antitermination protein NusG [Escherichia coli
SMS-3-5]
gi|187730221|ref|YP_001882667.1| transcription antitermination protein NusG [Shigella boydii CDC
3083-94]
gi|188492529|ref|ZP_02999799.1| transcription termination/antitermination factor NusG [Escherichia
coli 53638]
gi|195939607|ref|ZP_03084989.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. EC4024]
gi|208812131|ref|ZP_03253460.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4045]
gi|208819832|ref|ZP_03260152.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4042]
gi|209399471|ref|YP_002273498.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4115]
gi|209921460|ref|YP_002295544.1| transcription antitermination protein NusG [Escherichia coli SE11]
gi|217325434|ref|ZP_03441518.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. TW14588]
gi|218551034|ref|YP_002384825.1| transcription antitermination protein NusG [Escherichia fergusonii
ATCC 35469]
gi|218556536|ref|YP_002389450.1| transcription antitermination protein NusG [Escherichia coli IAI1]
gi|218697689|ref|YP_002405356.1| transcription antitermination protein NusG [Escherichia coli 55989]
gi|218702612|ref|YP_002410241.1| transcription antitermination protein NusG [Escherichia coli IAI39]
gi|218707600|ref|YP_002415119.1| transcription antitermination protein NusG [Escherichia coli
UMN026]
gi|238903038|ref|YP_002928834.1| transcription termination factor [Escherichia coli BW2952]
gi|253775389|ref|YP_003038220.1| transcription antitermination protein NusG [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254039237|ref|ZP_04873286.1| transcription termination/antitermination factor NusG [Escherichia
sp. 1_1_43]
gi|254163923|ref|YP_003047031.1| transcription antitermination protein NusG [Escherichia coli B str.
REL606]
gi|254795980|ref|YP_003080817.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. TW14359]
gi|256021698|ref|ZP_05435563.1| transcription antitermination protein NusG [Shigella sp. D9]
gi|256026297|ref|ZP_05440162.1| transcription antitermination protein NusG [Escherichia sp.
4_1_40B]
gi|260846782|ref|YP_003224560.1| transcription termination factor NusG [Escherichia coli O103:H2
str. 12009]
gi|260858091|ref|YP_003231982.1| transcription termination factor NusG [Escherichia coli O26:H11
str. 11368]
gi|260870693|ref|YP_003237095.1| transcription termination factor NusG [Escherichia coli O111:H-
str. 11128]
gi|261227307|ref|ZP_05941588.1| transcription termination factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261257054|ref|ZP_05949587.1| transcription termination factor NusG [Escherichia coli O157:H7
str. FRIK966]
gi|291285396|ref|YP_003502214.1| Transcription antitermination protein nusG [Escherichia coli O55:H7
str. CB9615]
gi|293407598|ref|ZP_06651516.1| nusG [Escherichia coli FVEC1412]
gi|293413417|ref|ZP_06656077.1| transcription termination/antitermination factor NusG [Escherichia
coli B354]
gi|293417485|ref|ZP_06660108.1| transcription termination/antitermination factor NusG [Escherichia
coli B185]
gi|293474289|ref|ZP_06664698.1| transcription termination/antitermination factor NusG [Escherichia
coli B088]
gi|298383346|ref|ZP_06992938.1| transcription antitermination protein nusG [Escherichia coli
FVEC1302]
gi|300819792|ref|ZP_07099979.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 107-1]
gi|300824639|ref|ZP_07104747.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 119-7]
gi|300897605|ref|ZP_07116013.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 198-1]
gi|300907533|ref|ZP_07125173.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 84-1]
gi|300919397|ref|ZP_07135903.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 115-1]
gi|300925847|ref|ZP_07141692.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 182-1]
gi|300928799|ref|ZP_07144308.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 187-1]
gi|300938794|ref|ZP_07153506.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 21-1]
gi|300947415|ref|ZP_07161606.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 116-1]
gi|300954789|ref|ZP_07167218.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 175-1]
gi|301019394|ref|ZP_07183571.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 69-1]
gi|301023348|ref|ZP_07187140.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 196-1]
gi|301302207|ref|ZP_07208339.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 124-1]
gi|301326087|ref|ZP_07219485.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 78-1]
gi|301645764|ref|ZP_07245684.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 146-1]
gi|307140673|ref|ZP_07500029.1| transcription antitermination protein NusG [Escherichia coli H736]
gi|307315045|ref|ZP_07594631.1| NusG antitermination factor [Escherichia coli W]
gi|309783933|ref|ZP_07678578.1| transcription termination/antitermination factor NusG [Shigella
dysenteriae 1617]
gi|309797685|ref|ZP_07692071.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 145-7]
gi|312974232|ref|ZP_07788402.1| transcription termination/antitermination factor NusG [Escherichia
coli 1827-70]
gi|331644716|ref|ZP_08345834.1| transcription termination/antitermination factor NusG [Escherichia
coli H736]
gi|331655679|ref|ZP_08356669.1| transcription termination/antitermination factor NusG [Escherichia
coli M718]
gi|331665636|ref|ZP_08366532.1| transcription termination/antitermination factor NusG [Escherichia
coli TA143]
gi|331670834|ref|ZP_08371669.1| transcription termination/antitermination factor NusG [Escherichia
coli TA271]
gi|331680102|ref|ZP_08380763.1| transcription termination/antitermination factor NusG [Escherichia
coli H591]
gi|331685723|ref|ZP_08386305.1| transcription termination/antitermination factor NusG [Escherichia
coli H299]
gi|84028777|sp|P0AFG1|NUSG_ECO57 RecName: Full=Transcription antitermination protein nusG
gi|84028778|sp|P0AFG0|NUSG_ECOLI RecName: Full=Transcription antitermination protein nusG
gi|84028779|sp|P0AFG2|NUSG_SHIFL RecName: Full=Transcription antitermination protein nusG
gi|209447284|pdb|2JVV|A Chain A, Solution Structure Of E. Coli Nusg Carboxyterminal Domain
gi|12518904|gb|AAG59178.1|AE005629_7 component in transcription antitermination [Escherichia coli
O157:H7 str. EDL933]
gi|147801|gb|AAA24622.1| NusG protein [Escherichia coli]
gi|396321|gb|AAC43080.1| ORF_o181 [Escherichia coli str. K-12 substr. MG1655]
gi|1790414|gb|AAC76956.1| transcription termination factor [Escherichia coli str. K-12
substr. MG1655]
gi|13364381|dbj|BAB38328.1| component in transcription antitermination [Escherichia coli
O157:H7 str. Sakai]
gi|24054560|gb|AAN45484.1| component in transcription antitermination [Shigella flexneri 2a
str. 301]
gi|30042995|gb|AAP18717.1| component in transcription antitermination [Shigella flexneri 2a
str. 2457T]
gi|73857953|gb|AAZ90660.1| component in transcription antitermination [Shigella sonnei Ss046]
gi|81242991|gb|ABB63701.1| component in transcription antitermination [Shigella dysenteriae
Sd197]
gi|81247735|gb|ABB68443.1| NusG [Shigella boydii Sb227]
gi|85676088|dbj|BAE77338.1| transcription termination factor [Escherichia coli str. K12 substr.
W3110]
gi|110617380|gb|ABF06047.1| component in transcription antitermination [Shigella flexneri 5
str. 8401]
gi|157069130|gb|ABV08385.1| transcription termination/antitermination factor NusG [Escherichia
coli HS]
gi|157076901|gb|ABV16609.1| transcription termination/antitermination factor NusG [Escherichia
coli E24377A]
gi|169756943|gb|ACA79642.1| NusG antitermination factor [Escherichia coli ATCC 8739]
gi|169891277|gb|ACB04984.1| transcription termination factor [Escherichia coli str. K-12
substr. DH10B]
gi|170520541|gb|ACB18719.1| transcription termination/antitermination factor NusG [Escherichia
coli SMS-3-5]
gi|187427213|gb|ACD06487.1| transcription termination/antitermination factor NusG [Shigella
boydii CDC 3083-94]
gi|188487728|gb|EDU62831.1| transcription termination/antitermination factor NusG [Escherichia
coli 53638]
gi|189001643|gb|EDU70629.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4076]
gi|189354220|gb|EDU72639.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4401]
gi|189359775|gb|EDU78194.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4486]
gi|189370168|gb|EDU88584.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC869]
gi|208733408|gb|EDZ82095.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4045]
gi|208739955|gb|EDZ87637.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4042]
gi|209160871|gb|ACI38304.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4115]
gi|209751858|gb|ACI74236.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751860|gb|ACI74237.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751862|gb|ACI74238.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751864|gb|ACI74239.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751866|gb|ACI74240.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209914719|dbj|BAG79793.1| transcription antitermination protein [Escherichia coli SE11]
gi|217321655|gb|EEC30079.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. TW14588]
gi|218354421|emb|CAV01219.1| transcription termination factor [Escherichia coli 55989]
gi|218358575|emb|CAQ91223.1| transcription termination factor [Escherichia fergusonii ATCC
35469]
gi|218363305|emb|CAR00955.1| transcription termination factor [Escherichia coli IAI1]
gi|218372598|emb|CAR20473.1| transcription termination factor [Escherichia coli IAI39]
gi|218434697|emb|CAR15629.1| transcription termination factor [Escherichia coli UMN026]
gi|226838472|gb|EEH70502.1| transcription termination/antitermination factor NusG [Escherichia
sp. 1_1_43]
gi|238863680|gb|ACR65678.1| transcription termination factor [Escherichia coli BW2952]
gi|242379512|emb|CAQ34328.1| transcription termination factor NusG [Escherichia coli BL21(DE3)]
gi|253326433|gb|ACT31035.1| NusG antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975824|gb|ACT41495.1| transcription antitermination protein NusG [Escherichia coli B str.
REL606]
gi|253979980|gb|ACT45650.1| transcription antitermination protein NusG [Escherichia coli
BL21(DE3)]
gi|254595380|gb|ACT74741.1| transcription termination factor [Escherichia coli O157:H7 str.
TW14359]
gi|257756740|dbj|BAI28242.1| transcription termination factor NusG [Escherichia coli O26:H11
str. 11368]
gi|257761929|dbj|BAI33426.1| transcription termination factor NusG [Escherichia coli O103:H2
str. 12009]
gi|257767049|dbj|BAI38544.1| transcription termination factor NusG [Escherichia coli O111:H-
str. 11128]
gi|260451191|gb|ACX41613.1| NusG antitermination factor [Escherichia coli DH1]
gi|281603368|gb|ADA76352.1| Transcription antitermination protein nusG [Shigella flexneri
2002017]
gi|284924074|emb|CBG37173.1| transcription antitermination protein [Escherichia coli 042]
gi|290765269|gb|ADD59230.1| Transcription antitermination protein nusG [Escherichia coli O55:H7
str. CB9615]
gi|291321319|gb|EFE60760.1| transcription termination/antitermination factor NusG [Escherichia
coli B088]
gi|291425366|gb|EFE98406.1| nusG [Escherichia coli FVEC1412]
gi|291430812|gb|EFF03809.1| transcription termination/antitermination factor NusG [Escherichia
coli B185]
gi|291468012|gb|EFF10511.1| transcription termination/antitermination factor NusG [Escherichia
coli B354]
gi|298276225|gb|EFI17746.1| transcription antitermination protein nusG [Escherichia coli
FVEC1302]
gi|299880908|gb|EFI89119.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 196-1]
gi|300318258|gb|EFJ68042.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 175-1]
gi|300358652|gb|EFJ74522.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 198-1]
gi|300399278|gb|EFJ82816.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 69-1]
gi|300400740|gb|EFJ84278.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 84-1]
gi|300413532|gb|EFJ96842.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 115-1]
gi|300418072|gb|EFK01383.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 182-1]
gi|300452984|gb|EFK16604.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 116-1]
gi|300456278|gb|EFK19771.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 21-1]
gi|300463210|gb|EFK26703.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 187-1]
gi|300522888|gb|EFK43957.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 119-7]
gi|300527613|gb|EFK48675.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 107-1]
gi|300842370|gb|EFK70130.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 124-1]
gi|300847180|gb|EFK74940.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 78-1]
gi|301075975|gb|EFK90781.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 146-1]
gi|306905550|gb|EFN36083.1| NusG antitermination factor [Escherichia coli W]
gi|308118697|gb|EFO55959.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 145-7]
gi|308928304|gb|EFP73766.1| transcription termination/antitermination factor NusG [Shigella
dysenteriae 1617]
gi|309704397|emb|CBJ03746.1| transcription antitermination protein [Escherichia coli ETEC
H10407]
gi|310331399|gb|EFP98664.1| transcription termination/antitermination factor NusG [Escherichia
coli 1827-70]
gi|313648632|gb|EFS13072.1| transcription termination/antitermination factor NusG [Shigella
flexneri 2a str. 2457T]
gi|315063307|gb|ADT77634.1| transcription termination factor [Escherichia coli W]
gi|315138538|dbj|BAJ45697.1| transcription antitermination protein nusG [Escherichia coli DH1]
gi|315253054|gb|EFU33022.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 85-1]
gi|315617345|gb|EFU97951.1| transcription termination/antitermination factor NusG [Escherichia
coli 3431]
gi|320172757|gb|EFW47991.1| Transcription antitermination protein NusG [Shigella dysenteriae
CDC 74-1112]
gi|320179557|gb|EFW54508.1| Transcription antitermination protein NusG [Shigella boydii ATCC
9905]
gi|320185980|gb|EFW60728.1| Transcription antitermination protein NusG [Shigella flexneri CDC
796-83]
gi|320190922|gb|EFW65572.1| Transcription antitermination protein NusG [Escherichia coli
O157:H7 str. EC1212]
gi|320200179|gb|EFW74768.1| Transcription antitermination protein NusG [Escherichia coli
EC4100B]
gi|320639072|gb|EFX08712.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. G5101]
gi|320644466|gb|EFX13529.1| transcription antitermination protein NusG [Escherichia coli
O157:H- str. 493-89]
gi|320649785|gb|EFX18306.1| transcription antitermination protein NusG [Escherichia coli
O157:H- str. H 2687]
gi|320655118|gb|EFX23074.1| transcription antitermination protein NusG [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320660762|gb|EFX28216.1| transcription antitermination protein NusG [Escherichia coli O55:H7
str. USDA 5905]
gi|320665880|gb|EFX32911.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. LSU-61]
gi|323155526|gb|EFZ41704.1| transcription termination/antitermination factor NusG [Escherichia
coli EPECa14]
gi|323161296|gb|EFZ47206.1| transcription termination/antitermination factor NusG [Escherichia
coli E128010]
gi|323167452|gb|EFZ53160.1| transcription termination/antitermination factor NusG [Shigella
sonnei 53G]
gi|323174509|gb|EFZ60134.1| transcription termination/antitermination factor NusG [Escherichia
coli LT-68]
gi|323177535|gb|EFZ63120.1| transcription termination/antitermination factor NusG [Escherichia
coli 1180]
gi|323182079|gb|EFZ67489.1| transcription termination/antitermination factor NusG [Escherichia
coli 1357]
gi|323380629|gb|ADX52897.1| NusG antitermination factor [Escherichia coli KO11]
gi|323933976|gb|EGB30450.1| transcription termination/antitermination protein NusG [Escherichia
coli E1520]
gi|323938901|gb|EGB35121.1| transcription termination/antitermination protein NusG [Escherichia
coli E482]
gi|323943601|gb|EGB39710.1| transcription termination/antitermination protein NusG [Escherichia
coli H120]
gi|323958908|gb|EGB54583.1| transcription termination/antitermination protein NusG [Escherichia
coli H489]
gi|323963800|gb|EGB59299.1| transcription termination/antitermination protein NusG [Escherichia
coli M863]
gi|323969055|gb|EGB64363.1| transcription termination/antitermination protein NusG [Escherichia
coli TA007]
gi|323974182|gb|EGB69314.1| transcription termination/antitermination protein NusG [Escherichia
coli TW10509]
gi|324017335|gb|EGB86554.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 117-3]
gi|324110894|gb|EGC04886.1| transcription termination/antitermination protein NusG [Escherichia
fergusonii B253]
gi|324115413|gb|EGC09358.1| transcription termination/antitermination protein NusG [Escherichia
coli E1167]
gi|325499286|gb|EGC97145.1| transcription antitermination protein NusG [Escherichia fergusonii
ECD227]
gi|326347168|gb|EGD70898.1| Transcription antitermination protein NusG [Escherichia coli
O157:H7 str. 1125]
gi|326347581|gb|EGD71303.1| Transcription antitermination protein NusG [Escherichia coli
O157:H7 str. 1044]
gi|327250452|gb|EGE62162.1| transcription termination/antitermination factor NusG [Escherichia
coli STEC_7v]
gi|331036016|gb|EGI08253.1| transcription termination/antitermination factor NusG [Escherichia
coli H736]
gi|331046604|gb|EGI18691.1| transcription termination/antitermination factor NusG [Escherichia
coli M718]
gi|331057154|gb|EGI29146.1| transcription termination/antitermination factor NusG [Escherichia
coli TA143]
gi|331061922|gb|EGI33846.1| transcription termination/antitermination factor NusG [Escherichia
coli TA271]
gi|331072257|gb|EGI43591.1| transcription termination/antitermination factor NusG [Escherichia
coli H591]
gi|331077033|gb|EGI48249.1| transcription termination/antitermination factor NusG [Escherichia
coli H299]
gi|332083870|gb|EGI89083.1| transcription termination/antitermination factor NusG [Shigella
boydii 5216-82]
gi|332092312|gb|EGI97387.1| transcription termination/antitermination factor NusG [Shigella
boydii 3594-74]
gi|332105293|gb|EGJ08639.1| transcription antitermination protein nusG [Shigella sp. D9]
Length = 181
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|206579787|ref|YP_002241081.1| transcription termination/antitermination factor NusG [Klebsiella
pneumoniae 342]
gi|260596081|ref|YP_003208652.1| transcription antitermination protein NusG [Cronobacter turicensis
z3032]
gi|288937726|ref|YP_003441785.1| NusG antitermination factor [Klebsiella variicola At-22]
gi|290513234|ref|ZP_06552595.1| transcription termination/antitermination factor NusG [Klebsiella
sp. 1_1_55]
gi|206568845|gb|ACI10621.1| transcription termination/antitermination factor NusG [Klebsiella
pneumoniae 342]
gi|260215258|emb|CBA27161.1| Transcription antitermination protein nusG [Cronobacter turicensis
z3032]
gi|288892435|gb|ADC60753.1| NusG antitermination factor [Klebsiella variicola At-22]
gi|289774331|gb|EFD82338.1| transcription termination/antitermination factor NusG [Klebsiella
sp. 1_1_55]
Length = 181
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|254453476|ref|ZP_05066913.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 238]
gi|198267882|gb|EDY92152.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 238]
Length = 188
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK ESI + GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 12 MAKRWYSVSVLSNFEKKIAESIRASVEEHGLEEQIGEVLVPTEEVIEIRRGKKVTAERRF 71
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +VE P +
Sbjct: 72 MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE+GE+V VS+GPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K V
Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEENQRLKVTVSIFGRATPVELEFTQVSKQV 188
>gi|146278581|ref|YP_001168740.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17025]
gi|145556822|gb|ABP71435.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
ATCC 17025]
Length = 178
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+++ YH I +V GFLG P P+ DSE+ I+N+VE +P S
Sbjct: 61 MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +++GE V V+DGPF F+G+V++VDEE SR+ V V IFGR TPVEL + QV K
Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175
>gi|156972590|ref|YP_001443497.1| transcription antitermination protein NusG [Vibrio harveyi ATCC
BAA-1116]
gi|156524184|gb|ABU69270.1| hypothetical protein VIBHAR_00230 [Vibrio harveyi ATCC BAA-1116]
Length = 182
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|312882839|ref|ZP_07742572.1| transcription antitermination protein NusG [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309369531|gb|EFP97050.1| transcription antitermination protein NusG [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 182
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHSMEESFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 YEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|157377461|ref|YP_001476061.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
gi|157319835|gb|ABV38933.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
Length = 183
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVLKTLNEYIQMHNMEHYFGEILVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++D E + I+ ++E V+ P V
Sbjct: 70 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLEETVESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK
Sbjct: 130 FEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182
>gi|209696271|ref|YP_002264201.1| transcription antitermination protein NusG [Aliivibrio salmonicida
LFI1238]
gi|208010224|emb|CAQ80555.1| transcription antitermination protein NusG [Aliivibrio salmonicida
LFI1238]
Length = 181
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVSQSLREYIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ ++ ++ P+V+GF+G T + P+P+TD E + I+N+++ A + P
Sbjct: 68 YVLVQMIMNDESWYLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLQQASEAPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG V+NVD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEAGEVVRVTEGPFADFNGTVENVDYEKSRIKVSVSIFGRATPVELEFSQVEK 180
>gi|218710885|ref|YP_002418506.1| transcription antitermination protein NusG [Vibrio splendidus
LGP32]
gi|218323904|emb|CAV20265.1| transcription antitermination protein NusG [Vibrio splendidus
LGP32]
Length = 182
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ ++ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGYEGRVSQSLREHIKMHDMEEFFGDVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 FEAGEVVRVNDGPFADFNGTVEEVDYEKSRIKVSVSIFGRATPVELEFGQVEKL 181
>gi|114771284|ref|ZP_01448704.1| Probable transcription antitermination protein NusG [alpha
proteobacterium HTCC2255]
gi|114548209|gb|EAU51096.1| Probable transcription antitermination protein NusG [alpha
proteobacterium HTCC2255]
Length = 177
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + + G+ + ++ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAELINEAVEQEGMQDEIEQVLVPTEEVIEVRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY+L++ M++K YH I + +V GFLG PSP+ D E+ I+NQVE V+ P +
Sbjct: 61 MPGYLLVRMDMSEKGYHLINNINRVTGFLGQPGKPSPMRDKEVAFILNQVEEGVENPRNL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++GE+V V++GPF F G+V+ VD+E SR+ V V IFGR TPVEL + QV K
Sbjct: 121 ITFDIGEQVNVTEGPFEGFAGMVEEVDQENSRLKVTVSIFGRATPVELEFTQVMK 175
>gi|188532309|ref|YP_001906106.1| transcription antitermination protein NusG [Erwinia tasmaniensis
Et1/99]
gi|259906924|ref|YP_002647280.1| transcription antitermination protein NusG [Erwinia pyrifoliae
Ep1/96]
gi|188027351|emb|CAO95196.1| Transcription antitermination protein [Erwinia tasmaniensis Et1/99]
gi|224962546|emb|CAX54001.1| Transcription antitermination protein [Erwinia pyrifoliae Ep1/96]
gi|283476717|emb|CAY72546.1| Transcription antitermination protein nusG [Erwinia pyrifoliae DSM
12163]
gi|310766069|gb|ADP11019.1| transcription antitermination protein NusG [Erwinia sp. Ejp617]
Length = 181
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|168777407|ref|ZP_02802414.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4196]
gi|187767347|gb|EDU31191.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4196]
Length = 181
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQHVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|157147225|ref|YP_001454544.1| transcription antitermination protein NusG [Citrobacter koseri ATCC
BAA-895]
gi|261340891|ref|ZP_05968749.1| transcription termination/antitermination factor NusG [Enterobacter
cancerogenus ATCC 35316]
gi|283787345|ref|YP_003367210.1| transcription antitermination protein [Citrobacter rodentium
ICC168]
gi|296100610|ref|YP_003610756.1| transcription antitermination protein NusG [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|157084430|gb|ABV14108.1| hypothetical protein CKO_03008 [Citrobacter koseri ATCC BAA-895]
gi|282950799|emb|CBG90475.1| transcription antitermination protein [Citrobacter rodentium
ICC168]
gi|288316944|gb|EFC55882.1| transcription termination/antitermination factor NusG [Enterobacter
cancerogenus ATCC 35316]
gi|295055069|gb|ADF59807.1| transcription antitermination protein NusG [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295095132|emb|CBK84222.1| transcription antitermination protein nusG [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 181
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|330953210|gb|EGH53470.1| transcription antitermination protein NusG [Pseudomonas syringae
Cit 7]
Length = 177
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDT +V+GF+G T + P+P+TD E E I +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTSRVMGFIGGTADKPAPITDKEAEAIRRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|269137529|ref|YP_003294229.1| transcription antiterminator [Edwardsiella tarda EIB202]
gi|294634227|ref|ZP_06712772.1| transcription termination/antitermination factor NusG [Edwardsiella
tarda ATCC 23685]
gi|267983189|gb|ACY83018.1| transcription antiterminator [Edwardsiella tarda EIB202]
gi|291092352|gb|EFE24913.1| transcription termination/antitermination factor NusG [Edwardsiella
tarda ATCC 23685]
gi|304557602|gb|ADM40266.1| Transcription antitermination protein NusG [Edwardsiella tarda
FL6-60]
Length = 181
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|71905949|ref|YP_283536.1| transcription antitermination protein NusG [Dechloromonas aromatica
RCB]
gi|71845570|gb|AAZ45066.1| transcription antitermination protein nusG [Dechloromonas aromatica
RCB]
Length = 177
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK + +I R++R G++ I +P E VV ++ G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGFEKSVMRAIQERITRLGMEEKFGRILVPVEEVVEMKGGQKAISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL + M D +H +K+TPKV GF+G T P+P+++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLCEMEMDDDSWHLVKNTPKVTGFVGGTATKPTPISEKEVEKIMQQMQEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPF F+G V++V+ EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEVVRVKEGPFTDFHGSVEDVNYEKNRLRVSVTIFGRATPVELEFAQVEK 176
>gi|331007102|ref|ZP_08330325.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC1989]
gi|330419097|gb|EGG93540.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC1989]
Length = 177
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EKK ++ R+ + + L E+ +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGYEKKVSAALKERIELNDMQELFGEVLVPTEEVVEMRAGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD +H +K+TP+V+GF+ G + P+P+T+ E + I+ +++ +V++P
Sbjct: 61 FPGYVLVQMELTDASWHLVKETPRVMGFIGGKADEPAPITEKEADLILQRIDDSVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKSRLQVAVLIFGRSTPVELEFGQVEK 176
>gi|32491266|ref|NP_871520.1| hypothetical protein WGLp517 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166473|dbj|BAC24663.1| nusG [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 181
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E K +S+ ++H E+ IP+E ++ +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFESKVAQSLKEHTKLYKMEHFFGEVMIPTEEILEIRHGKRKKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI VM D ++ +K+ PKV+GF+G T + P+P++D EIE+I+ +++ +P
Sbjct: 68 YVLIHMVMNDSSWYLVKNIPKVMGFVGGTSDKPAPISDKEIEYIVKRLQKIGNKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF+ FNG+V+ VD EK+R+ V V+IFGR TPVEL ++Q+EK
Sbjct: 128 FEPGELVRVKDGPFSDFNGVVEEVDYEKNRLKVSVLIFGRATPVELDFSQLEK 180
>gi|254483533|ref|ZP_05096759.1| transcription termination/antitermination factor NusG [marine gamma
proteobacterium HTCC2148]
gi|214036190|gb|EEB76871.1| transcription termination/antitermination factor NusG [marine gamma
proteobacterium HTCC2148]
Length = 177
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKKVATALQERIELHGMQDRFGEVLVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G T + P+P+T++E I+ +VE V+ P
Sbjct: 61 FPGYVLVQMELGDDSWHLVKETPRVMGFIGGTADTPAPITEAEASAILQRVEQGVEAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|322834826|ref|YP_004214853.1| NusG antitermination factor [Rahnella sp. Y9602]
gi|321170027|gb|ADW75726.1| NusG antitermination factor [Rahnella sp. Y9602]
Length = 181
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G + SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|304310004|ref|YP_003809602.1| Transcription antitermination protein [gamma proteobacterium HdN1]
gi|301795737|emb|CBL43936.1| Transcription antitermination protein [gamma proteobacterium HdN1]
Length = 177
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK+ S+ R+ R GL+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKQVKRSLEERVKRFGLEDKFGEVLVPTEEVVEIRGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M ++ ++ +K+ PKV+GF+G T + P+P++D E I+ +VE V++P
Sbjct: 61 FPGYVLVQMEMDEESWYLVKECPKVMGFIGGTLDKPAPISDVEANAILRRVEDGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176
>gi|238918138|ref|YP_002931652.1| transcription antitermination protein NusG [Edwardsiella ictaluri
93-146]
gi|238867706|gb|ACR67417.1| transcription termination/antitermination factor NusG, putative
[Edwardsiella ictaluri 93-146]
Length = 181
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQIGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|126732293|ref|ZP_01748093.1| transcription termination/antitermination factor NusG [Sagittula
stellata E-37]
gi|126707162|gb|EBA06228.1| transcription termination/antitermination factor NusG [Sagittula
stellata E-37]
Length = 182
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 6 MAKRWYSVSVLSNFEKKIAEQIRTSVEEQGLQDQIDEVMVPTEEVIEVRRGKKVTTERRF 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I + +V GFLG P P+ D+E+E I+ +V+ + + P +
Sbjct: 66 MPGYVLVHMEMSDRGYHLISNINRVTGFLGPQGRPMPMRDAEVEAILGRVQESDEAPRTL 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GERV V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 126 IHFEIGERVKVNDGPFEGFDGMVEGVDEDNQRLSVSVSIFGRETPVELDFTQVSK 180
>gi|212709021|ref|ZP_03317149.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM
30120]
gi|212688310|gb|EEB47838.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM
30120]
Length = 181
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|119502910|ref|ZP_01624995.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080]
gi|119461256|gb|EAW42346.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080]
Length = 177
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V +S EKK ++ R+ R+ + EI +P+E VV ++ G+K SER+F
Sbjct: 1 MAMRWYVVHAFSQYEKKVAVALKERIERNSMQDYFGEIIVPTEEVVEMKGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+T++E I+ +VEA V +P
Sbjct: 61 FPGYVLVQMELNDDSWHLVKETPRVLGFIGGKADKPAPITEAEASAILQRVEAGVDQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|225076428|ref|ZP_03719627.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens
NRL30031/H210]
gi|241760434|ref|ZP_04758528.1| transcription termination/antitermination factor NusG [Neisseria
flavescens SK114]
gi|261381381|ref|ZP_05985954.1| transcription termination/antitermination factor NusG [Neisseria
subflava NJ9703]
gi|224952228|gb|EEG33437.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens
NRL30031/H210]
gi|241319103|gb|EER55596.1| transcription termination/antitermination factor NusG [Neisseria
flavescens SK114]
gi|284795628|gb|EFC50975.1| transcription termination/antitermination factor NusG [Neisseria
subflava NJ9703]
Length = 177
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R ++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIARENMEEYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ G+G P P++ + + I+ Q + V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++R+ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177
>gi|152998283|ref|YP_001343118.1| NusG antitermination factor [Marinomonas sp. MWYL1]
gi|150839207|gb|ABR73183.1| NusG antitermination factor [Marinomonas sp. MWYL1]
Length = 177
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY+VQ YS EK + S+ R+ G + +I +P+E VV +R G+K SER+F
Sbjct: 1 MTKRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K T +V+GF+G T + PSP+T E + I+ +V V +P
Sbjct: 61 YPGYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V V++GPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176
>gi|90020566|ref|YP_526393.1| transcription antitermination protein nusG [Saccharophagus
degradans 2-40]
gi|89950166|gb|ABD80181.1| transcription antitermination protein nusG [Saccharophagus
degradans 2-40]
Length = 177
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK +I R+ + + ++ +P+E V+ +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKKVAAAIKERIELNNMQDSFGDVLVPTEEVIEIRAGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD +H +K+TP+V+GF+ G + P+P+T+ E + I+ +V+ + +P
Sbjct: 61 FPGYVLVQMELTDDAWHLVKETPRVMGFIGGKADRPAPITEKEAQLILQRVDDSADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPF FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK+
Sbjct: 121 KTLFEPGEMVRVTDGPFNDFNGVVEEVNYEKSKLQVAVLIFGRSTPVELEFGQVEKV 177
>gi|56698338|ref|YP_168711.1| transcription termination/antitermination factor NusG [Ruegeria
pomeroyi DSS-3]
gi|56680075|gb|AAV96741.1| transcription termination/antitermination factor NusG [Ruegeria
pomeroyi DSS-3]
Length = 177
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRASVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLINTINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GERV V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEIGERVKVNDGPFEGFDGMVEGVDDDSQKLRVSVSIFGRETPVELDFTQVAK 175
>gi|89071242|ref|ZP_01158421.1| transcription termination/antitermination factor NusG [Oceanicola
granulosus HTCC2516]
gi|89043228|gb|EAR49458.1| transcription termination/antitermination factor NusG [Oceanicola
granulosus HTCC2516]
Length = 177
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 175
>gi|152980025|ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp.
Marseille]
gi|151280102|gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille]
Length = 199
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R +R+G++ +I +P+E V+ V+ G K SERRFFPG
Sbjct: 26 RWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSERRFFPG 85
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N P+P+ E++ IM Q++ V++P V
Sbjct: 86 YVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKPRPKVL 145
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 146 YEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199
>gi|284009039|emb|CBA75992.1| transcription antitermination protein [Arsenophonus nasoniae]
Length = 181
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ E+ +P+E V+ +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEARVAQSLREHIKLHAMEDKFGEVMVPTEEVMEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMTMDDDSWHLVRSVPRVMGFIGGTPDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 128 FEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181
>gi|119899718|ref|YP_934931.1| transcription antitermination protein NusG [Azoarcus sp. BH72]
gi|119672131|emb|CAL96045.1| putative transcription antitermination protein [Azoarcus sp. BH72]
Length = 179
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY+V YS EK ++ R++R+G+ +I +P E VV ++ G+K SER+F
Sbjct: 3 MTKRWYVVHAYSGFEKSVQRALVDRINRAGMQDAFGQILVPVEEVVEMKGGQKSISERKF 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +K TPKV GF+ GT P+P+++ E+E IM Q++ V +P
Sbjct: 63 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPTPISEKEVEKIMQQMQEGVDKPRP 122
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V +GPF F+G V++V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 123 KVLFETGEVVRVKEGPFTDFHGSVEDVNYEKSKLRVSVTIFGRATPVELDFAQVEK 178
>gi|319639537|ref|ZP_07994284.1| transcription antitermination protein nusG [Neisseria mucosa C102]
gi|317399108|gb|EFV79782.1| transcription antitermination protein nusG [Neisseria mucosa C102]
Length = 177
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R ++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIARENMEDYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ G+G P P++ + + I+ Q + V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++R+ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177
>gi|261854938|ref|YP_003262221.1| NusG antitermination factor [Halothiobacillus neapolitanus c2]
gi|261835407|gb|ACX95174.1| NusG antitermination factor [Halothiobacillus neapolitanus c2]
Length = 177
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E +++ R+ R GL L EI +PSE VV +R G K SER+F
Sbjct: 1 MAMRWYVVQAFSQFENSVKKALEERIEREGLQSLFGEILVPSEEVVEMRDGVKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD+ +H + P+V+GF+G +G P+P++ E E IM +V+ + +P
Sbjct: 61 YPGYVLVQIDMTDEAWHLVNSVPRVLGFVGDSGGKPTPISSKEAEAIMTRVKDSTDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+VGE V V DGPF F G+V+ V+ EKSR+HV V IFGR TPVEL ++QV K
Sbjct: 121 KTLFDVGEMVRVCDGPFNDFTGVVEEVNYEKSRLHVAVSIFGRSTPVELGFDQVAK 176
>gi|261344394|ref|ZP_05972038.1| transcription termination/antitermination factor NusG [Providencia
rustigianii DSM 4541]
gi|282567667|gb|EFB73202.1| transcription termination/antitermination factor NusG [Providencia
rustigianii DSM 4541]
Length = 181
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLHAMEDYFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D+ +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|56415975|ref|YP_153050.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197364902|ref|YP_002144539.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56130232|gb|AAV79738.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197096379|emb|CAR61984.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 181
Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN ++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNCLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|289209341|ref|YP_003461407.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix]
gi|288944972|gb|ADC72671.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix]
Length = 177
Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E + S+ R+ R G+ +I +P+E VV ++ G+K SER+F
Sbjct: 1 MALRWYVVQAFSGFEAQVKRSLEERIERFGMQDHFGQILVPTEEVVEMKDGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ +H +K P+V+GF+G T + P+P++D E + I+ +++ ++P
Sbjct: 61 FPGYVLVQMDLNDEAWHLVKAVPRVLGFIGGTADRPAPISDKEADAILQRMQEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEMVRVTDGPFNDFNGVVEEVNYEKSRLLVAVQIFGRSTPVELEFHQVEK 176
>gi|294789162|ref|ZP_06754401.1| transcription termination/antitermination factor NusG [Simonsiella
muelleri ATCC 29453]
gi|294482903|gb|EFG30591.1| transcription termination/antitermination factor NusG [Simonsiella
muelleri ATCC 29453]
Length = 182
Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 124/182 (68%), Gaps = 5/182 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++Q YS EK +++ R++R +D +I +P E VV ++ GR++ SER+F
Sbjct: 1 MAKRWYVLQAYSGFEKNVQKTLKERIAREEMDEYFGQILVPVEEVVDIKNGRRMVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQV----EAAVQ 115
FPGYVLI+ MTD +H +K TP+V GF+ GT P P+T E++ +M QV E ++
Sbjct: 61 FPGYVLIEMEMTDSSWHLVKSTPRVNGFIGGTAHRPLPITQREVDAMMAQVGGSFEVGMK 120
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+P V FEVG++V V++GPFA F G+V++VD EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKPRVEFEVGQQVRVNEGPFADFTGLVEHVDYEKNKLRVTVQIFGRETPVELEFGQVEK 180
Query: 176 IV 177
+V
Sbjct: 181 VV 182
>gi|260774619|ref|ZP_05883531.1| transcription antitermination protein NusG [Vibrio metschnikovii
CIP 69.14]
gi|260610413|gb|EEX35620.1| transcription antitermination protein NusG [Vibrio metschnikovii
CIP 69.14]
Length = 182
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHAMEEHFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D+ +H ++ P+V+GF+G T + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKTM 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V++GPFA FNG V+ D +KSR+ V V IFGR TPVEL + QVEK+
Sbjct: 128 FEVGEVVRVTEGPFADFNGTVEETDYDKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|127511080|ref|YP_001092277.1| NusG antitermination factor [Shewanella loihica PV-4]
gi|126636375|gb|ABO22018.1| transcription antitermination protein nusG [Shewanella loihica
PV-4]
Length = 180
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++H E+ +P+E VV +R G++ SER+FFPG
Sbjct: 7 RWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++D E + I+ +++ + P V
Sbjct: 67 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAILQRLQETTESPTHRVM 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 127 FEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 179
>gi|82701887|ref|YP_411453.1| transcription antitermination protein NusG [Nitrosospira
multiformis ATCC 25196]
gi|82409952|gb|ABB74061.1| transcription antitermination protein nusG [Nitrosospira
multiformis ATCC 25196]
Length = 177
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EK ++ R+SR+G+ +I +P E V+ ++ G+K SER+F
Sbjct: 1 MEKKWYVVHAYSGFEKSVQRALKERISRAGMLDKFGQILVPVEEVIEMKAGQKNLSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K+TPKV GF+G T NP+P+++ E+++I++Q++ V++P
Sbjct: 61 FPGYVLVEMEMTDETWHLVKNTPKVTGFIGGTAMNPTPISEKEVQNILHQIQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V +GPF F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFETGEAVRVKEGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFSQVEK 176
>gi|92112542|ref|YP_572470.1| transcription antitermination protein NusG [Chromohalobacter
salexigens DSM 3043]
gi|91795632|gb|ABE57771.1| transcription antitermination protein nusG [Chromohalobacter
salexigens DSM 3043]
Length = 177
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK + S+ R+ G++ EI +P+E VV +R G++ SER+F
Sbjct: 1 MSKRWYVVHAYSGFEKHVMRSLMERVKMYGMEDQFGEILVPTEEVVEMRDGKRRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H + +TP+V+GF+ GT E P+P+T E + I+ +V+ +P
Sbjct: 61 YPGYVLVEMEMTDASWHLVNETPRVMGFIGGTPEKPAPITQKEADGILRRVQDGTDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFDPGETVRVVDGPFADFNGVVEEVNYEKSRLQVSVLIFGRSTPVELEFAQVEK 176
>gi|71083815|ref|YP_266535.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1062]
gi|91763149|ref|ZP_01265113.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1002]
gi|71062928|gb|AAZ21931.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717562|gb|EAS84213.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1002]
Length = 176
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 119/171 (69%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQ +SN E K I ++ + + EI +P+ V V++G+++ ++++FPGY
Sbjct: 4 WYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFPGY 63
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLIK+ M + +YH IK+ +V GFLG+ P PV+D EIE I+ Q++ V +P S + +
Sbjct: 64 VLIKSEMDNDLYHLIKNLKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIEYS 123
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+GE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK
Sbjct: 124 IGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEK 174
>gi|271498787|ref|YP_003331812.1| NusG antitermination factor [Dickeya dadantii Ech586]
gi|270342342|gb|ACZ75107.1| NusG antitermination factor [Dickeya dadantii Ech586]
Length = 181
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|242241132|ref|YP_002989313.1| transcription antitermination protein NusG [Dickeya dadantii
Ech703]
gi|251791448|ref|YP_003006169.1| transcription antitermination protein NusG [Dickeya zeae Ech1591]
gi|242133189|gb|ACS87491.1| NusG antitermination factor [Dickeya dadantii Ech703]
gi|247540069|gb|ACT08690.1| NusG antitermination factor [Dickeya zeae Ech1591]
Length = 181
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHNMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|23012400|ref|ZP_00052495.1| COG0250: Transcription antiterminator [Magnetospirillum
magnetotacticum MS-1]
Length = 244
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 108/151 (71%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY++ VYS EKK +SI + + G+ +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3 TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGTKVNAERKFF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E I+ QV+ V+RP S+
Sbjct: 63 PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
FEVGE+V VSDGPF SFNG+V+ VDEEK+R
Sbjct: 123 TFEVGEQVRVSDGPFTSFNGMVEEVDEEKAR 153
>gi|149203664|ref|ZP_01880633.1| transcription termination/antitermination factor NusG [Roseovarius
sp. TM1035]
gi|149142781|gb|EDM30823.1| transcription termination/antitermination factor NusG [Roseovarius
sp. TM1035]
Length = 177
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVTENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175
>gi|89902361|ref|YP_524832.1| NusG antitermination factor [Rhodoferax ferrireducens T118]
gi|89347098|gb|ABD71301.1| transcription antitermination protein nusG [Rhodoferax
ferrireducens T118]
Length = 202
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++RSG+ H I +P E VV ++ G+K +ER+FFPG
Sbjct: 29 RWYVVHAYSGMEKAVERNITERINRSGMQHKFGRILVPMEEVVEIKNGQKKTTERKFFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H +K T KV GF+ G P+P++++E+ I+NQ++ ++P V
Sbjct: 89 YVLVEMVMDDDTWHLVKHTNKVTGFVGGLKTRPAPISEAEVLKIVNQMQEGTEKPRHKVE 148
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V V DGPF FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK
Sbjct: 149 FEVGEFVRVKDGPFTDFNGSVEDVNYEKSKVRVAVTIFGRATPVELDFSQIEK 201
>gi|88799206|ref|ZP_01114785.1| transcription antitermination protein NusG [Reinekea sp. MED297]
gi|88777965|gb|EAR09161.1| transcription antitermination protein NusG [Reinekea sp. MED297]
Length = 177
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK+ S+ ++ + EI +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGYEKRVAGSLKEQVELQSMQDQFGEILVPTESVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D+ +H +KDTP+V+GF+ GT E P+P+T E E I+ +V+ +P
Sbjct: 61 YPGYVLVEMEMNDETWHLVKDTPRVMGFIGGTAEKPAPLTTREAEAILQRVKDGADKPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTIYEPGEVVRVIDGPFADFNGTVEKVNYEKSRLQVSVSIFGRATPVELEFVQVEK 176
>gi|268592956|ref|ZP_06127177.1| transcription termination/antitermination factor NusG [Providencia
rettgeri DSM 1131]
gi|291311427|gb|EFE51880.1| transcription termination/antitermination factor NusG [Providencia
rettgeri DSM 1131]
Length = 181
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFEGRVAQSLREHIKLHAMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|254438013|ref|ZP_05051507.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 307]
gi|198253459|gb|EDY77773.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 307]
Length = 188
Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 12 MAKRWYSVSVLSNFEKKIAETIRASVEEHGLEEQIGEVLVPTEEVIEVRRGKKVTAERRF 71
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +VE P +
Sbjct: 72 MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V VS+GPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 186
>gi|307128974|ref|YP_003880990.1| transcription termination factor [Dickeya dadantii 3937]
gi|306526503|gb|ADM96433.1| transcription termination factor [Dickeya dadantii 3937]
Length = 181
Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|237747354|ref|ZP_04577834.1| transcription antiterminator [Oxalobacter formigenes HOxBLS]
gi|229378705|gb|EEO28796.1| transcription antiterminator [Oxalobacter formigenes HOxBLS]
Length = 195
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V VYS EK S+ R+ R G+ +I +P+E VV V+ G+K +ERRFFPG
Sbjct: 22 RWYVVHVYSGMEKSVRRSLLERIDRMGMADKFGQILVPTEEVVEVKSGQKSVTERRFFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ MTD +H +KDT KV GF+G N P+PV E++ ++ Q++ V +P +
Sbjct: 82 YVLIEMEMTDDTWHLVKDTGKVTGFVGGKSNKPTPVPAREMDKLLQQMQEGVDKPRPKIS 141
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 142 YEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195
>gi|256821650|ref|YP_003145613.1| NusG antitermination factor [Kangiella koreensis DSM 16069]
gi|256795189|gb|ACV25845.1| NusG antitermination factor [Kangiella koreensis DSM 16069]
Length = 177
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E K + R+ +GL+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MALRWYVVQAFSGYENKVKTMLEERIQLAGLEDKFGEVLVPTEEVVEMRAGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M ++ + +++TP+V+GF+G T + P+P+++ E I+N++E + +P
Sbjct: 61 FPGYVLVQMDMDEESWQVVRNTPRVMGFIGGTSDRPAPISEKEANAILNRIEDSGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V+DGPFA FNG+V++V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEPGEMVRVTDGPFADFNGVVESVNYEKSRLQVSVSIFGRSTPVELEFSQVEK 176
>gi|94676921|ref|YP_588932.1| transcription termination/antitermination factor NusG [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|94220071|gb|ABF14230.1| transcription termination/antitermination factor NusG [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 181
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +S+ + + L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGLEGRVAQSLREHIKLYATEKLFGEVIVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D +H +++ P+V+GF+G T + PSP++D E+ IMN+++ +P
Sbjct: 68 YVLVHMVMNDSSWHLVRNVPRVMGFIGGTSDRPSPISDKEVLAIMNRLQKTGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD +KSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELVRVNDGPFADFNGVVEEVDYDKSRLKVSVSIFGRTTPVELDFSQVEK 180
>gi|311086362|gb|ADP66443.1| transcription antitermination protein NusG [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
Length = 181
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +SI + + ++ L E+ +PS+ VV +R G++ SE +FFPG
Sbjct: 8 RWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRSGQRRKSEYKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ MTD +H I++ PKV+GF+G + PSP++D E+E I+N++ +P
Sbjct: 68 YVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180
>gi|307543813|ref|YP_003896292.1| transcription antitermination protein NusG [Halomonas elongata DSM
2581]
gi|307215837|emb|CBV41107.1| transcription antitermination protein NusG [Halomonas elongata DSM
2581]
Length = 177
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK + S+ R+ G++ EI +P+E VV VR G++ SER+F
Sbjct: 1 MSKRWYVVHAYSGFEKHVMRSLTERVKLYGMEDRFGEILVPTEEVVEVRDGKRRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H + +TP+V+GF+ GT E P+P+T E + I+++V+ ++P
Sbjct: 61 YPGYVLVEMEMADDTWHLVNETPRVMGFIGGTKEKPAPITQREADAILSRVKDGTEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPFA FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGQSVRVIDGPFADFNGVVEEVNYDKSRLQVSVLIFGRSTPVELEFAQVEK 176
>gi|237749504|ref|ZP_04579984.1| transcription antiterminator [Oxalobacter formigenes OXCC13]
gi|229380866|gb|EEO30957.1| transcription antiterminator [Oxalobacter formigenes OXCC13]
Length = 195
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY+V VYS EK ++ R+ R G+ EI +P+E VV V+ G+K +ERRFF
Sbjct: 20 TMRWYVVHVYSGMEKSVRRALMERIERMGMTDQFGEILVPTEEVVEVKGGQKSVTERRFF 79
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY+L++ MTD+ +H ++DT KV GF+G N P+P+ E+E ++ Q++ V +P
Sbjct: 80 PGYILVEMEMTDETWHLVRDTGKVTGFVGGKSNKPTPIPHREMEKLLQQMQDGVAKPRPK 139
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 ISYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195
>gi|88704396|ref|ZP_01102110.1| Bacterial transcription antitermination protein NusG
[Congregibacter litoralis KT71]
gi|88701447|gb|EAQ98552.1| Bacterial transcription antitermination protein NusG
[Congregibacter litoralis KT71]
Length = 177
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ ++ +P+E VV +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKKVATALQERIELHGMGDRFGDVLVPTEEVVEMRAGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I++++E + P
Sbjct: 61 FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|254516893|ref|ZP_05128951.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR5-3]
gi|219674398|gb|EED30766.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR5-3]
Length = 177
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ ++ +P+E VV +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKKVATALKERIELHGMTDRFGDVLVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I++++E + P
Sbjct: 61 FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGEMVRVVDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|126724847|ref|ZP_01740690.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2150]
gi|126706011|gb|EBA05101.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2150]
Length = 177
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + +GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNYEKKIAEQIRTDVITAGLEDEIEEVLVPTEEVIEVRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVLI+ M+D+ +H I +V GFLG P P+ D+E+ I+N+VE P +
Sbjct: 61 MPGYVLIRMEMSDRGFHLINSINRVTGFLGQQGRPMPMRDAEVNQILNRVEEGEAAPRNL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+FFE+GE+V V+ GPF F G+V+ VD+E R+ V V IFGR TPVEL Y +V K
Sbjct: 121 IFFEIGEKVKVNGGPFEGFEGMVEEVDDENQRLKVTVSIFGRETPVELEYTEVTK 175
>gi|254467081|ref|ZP_05080492.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium Y4I]
gi|206687989|gb|EDZ48471.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium Y4I]
Length = 177
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVETPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ ++ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQKLKVTVSIFGRETPVELDFAQVTK 175
>gi|254462232|ref|ZP_05075648.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2083]
gi|206678821|gb|EDZ43308.1| transcription termination/antitermination factor NusG
[Rhodobacteraceae bacterium HTCC2083]
Length = 177
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I +GL+ + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSTIENGLEDDIEEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M+D+ YH I +V GFLG P P+ D+E+E I+ +V P +
Sbjct: 61 MPGYVLVRMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVEAILGRVAEGEDAPRNI 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E R+ V V IFGR TPVEL Y QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRETPVELEYTQVNK 175
>gi|89053051|ref|YP_508502.1| transcription antitermination protein nusG [Jannaschia sp. CCS1]
gi|88862600|gb|ABD53477.1| transcription antitermination protein nusG [Jannaschia sp. CCS1]
Length = 177
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EK+ E I ++ GL+ ++ E+ +P E V+ +R+G+KV RRF
Sbjct: 1 MAKRWYSVSVLSNFEKRIAEQIRTAVAEKGLEDVIEEVLVPEEDVIEIRRGKKVTVPRRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ MTD YH I +V GFLG P P+ D E+ I+N+VE P S+
Sbjct: 61 MPGYVLVRMEMTDVGYHVISSIQRVTGFLGPQGRPMPMRDEEVNSILNRVEEGEASPRST 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F+VGE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL Y QV K
Sbjct: 121 ITFDVGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEYTQVSK 175
>gi|190572932|ref|YP_001970777.1| transcription antitermination protein NusG [Stenotrophomonas
maltophilia K279a]
gi|254525223|ref|ZP_05137278.1| transcription termination/antitermination factor NusG
[Stenotrophomonas sp. SKA14]
gi|190010854|emb|CAQ44463.1| putative transcription antitermination protein [Stenotrophomonas
maltophilia K279a]
gi|219722814|gb|EED41339.1| transcription termination/antitermination factor NusG
[Stenotrophomonas sp. SKA14]
Length = 186
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 123/184 (66%), Gaps = 10/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ R G++ ++ +P+E VV +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVVEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+TP+V+GF+G T + P P+ DSE E I+N+V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQEG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQV 182
Query: 174 EKIV 177
EK V
Sbjct: 183 EKAV 186
>gi|258591304|emb|CBE67603.1| component in transcription antitermination [NC10 bacterium 'Dutch
sediment']
Length = 176
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 118/176 (67%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K ESI R + GL ++++ IP+E VV ++KG++ S R+F
Sbjct: 1 MSQSWYVIHTYSGFENKVKESIEQRAAALGLSDKISKVMIPTEDVVELKKGKRTVSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVLIKA M++++++ +K+TPKV GF+G P+PV + +++ I+ QVE +RP
Sbjct: 61 FPGYVLIKAEMSEQLWYLVKNTPKVTGFVGPATQPTPVPEEQVQTILQQVEEGAERPKHR 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F GE V V DGPFA+F G+V V EK R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 VMFLRGESVRVIDGPFANFTGLVDEVKPEKGRLKVMVSIFGRPTPVDLEFLQVEKV 176
>gi|194364522|ref|YP_002027132.1| transcription antitermination protein NusG [Stenotrophomonas
maltophilia R551-3]
gi|194347326|gb|ACF50449.1| NusG antitermination factor [Stenotrophomonas maltophilia R551-3]
Length = 186
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 123/184 (66%), Gaps = 10/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ R G++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+TP+V+GF+G T + P P+ DSE E I+N+V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQEG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQV 182
Query: 174 EKIV 177
EK V
Sbjct: 183 EKAV 186
>gi|220935504|ref|YP_002514403.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
gi|219996814|gb|ACL73416.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
Length = 177
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E S+ R+ R G+ EI +P+E VV +R G+K SER+F
Sbjct: 1 MALRWYVVHAYSGFENHVKRSLEERIERYGMQDKFGEILVPTEEVVEMRDGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +KD PKV+GF+G + + P+P++D E ++I+ +++ ++P
Sbjct: 61 FPGYVLVQMELDDDTWHLVKDVPKVLGFIGASADKPTPISDKEAQNILQRMQEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V DGPF FNG+V+ V+ +K+R+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEAGEVVRVIDGPFNDFNGVVEEVNYDKNRLLVAVQIFGRSTPVELEFHQVEK 176
>gi|159042815|ref|YP_001531609.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12]
gi|157910575|gb|ABV92008.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12]
Length = 177
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKHAVAEAGLEDDIEEVLVPTEEVIEVRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ MTD+ YH I +V GFLG P + D E+ I+N+VE + P S
Sbjct: 61 MPGYVLVRMEMTDQGYHLINSINRVTGFLGPQGRPMAMRDDEVNQILNRVEEGQEAPRSL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++GE+V V+DGPF F+G V+ VD++ +R+ V V IFGR TPVEL + QV K
Sbjct: 121 ITFDIGEQVNVTDGPFEGFSGSVEEVDDDNNRLKVTVSIFGRATPVELEFTQVTK 175
>gi|85706805|ref|ZP_01037896.1| transcription termination/antitermination factor NusG [Roseovarius
sp. 217]
gi|85668598|gb|EAQ23468.1| transcription termination/antitermination factor NusG [Roseovarius
sp. 217]
Length = 177
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + +GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVVENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175
>gi|149913528|ref|ZP_01902061.1| transcription antitermination protein NusG [Roseobacter sp.
AzwK-3b]
gi|149812648|gb|EDM72477.1| transcription antitermination protein NusG [Roseobacter sp.
AzwK-3b]
Length = 177
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EK+ E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKRIAEQIRQSVAEQGLEEEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +E+GERV V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHYEIGERVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRETPVELEFTQVTK 175
>gi|163732875|ref|ZP_02140320.1| transcription antitermination protein NusG [Roseobacter litoralis
Och 149]
gi|161394235|gb|EDQ18559.1| transcription antitermination protein NusG [Roseobacter litoralis
Och 149]
Length = 177
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 175
>gi|110681150|ref|YP_684157.1| transcription antitermination protein NusG [Roseobacter
denitrificans OCh 114]
gi|109457266|gb|ABG33471.1| transcription antitermination protein NusG [Roseobacter
denitrificans OCh 114]
Length = 191
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 15 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 74
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 75 MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K
Sbjct: 135 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 189
>gi|15616668|ref|NP_239880.1| transcription antitermination protein NusG [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|219681425|ref|YP_002467810.1| transcription antitermination protein NusG [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219681981|ref|YP_002468365.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|257471100|ref|ZP_05635099.1| transcription antitermination protein NusG [Buchnera aphidicola
str. LSR1 (Acyrthosiphon pisum)]
gi|11133951|sp|P57151|NUSG_BUCAI RecName: Full=Transcription antitermination protein nusG
gi|25299609|pir||F84934 transcription antitermination protein nusG [imported] - Buchnera
sp. (strain APS)
gi|10038731|dbj|BAB12766.1| transcription antitermination protein nusG [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|219621714|gb|ACL29870.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624268|gb|ACL30423.1| transcription antitermination protein NusG [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311085787|gb|ADP65869.1| transcription antitermination protein NusG [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|311086940|gb|ADP67020.1| transcription antitermination protein NusG [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
Length = 181
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +SI + + ++ L E+ +PS+ VV +R G++ SE +FFPG
Sbjct: 8 RWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKSEYKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ MTD +H I++ PKV+GF+G + PSP++D E+E I+N++ +P
Sbjct: 68 YVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 FEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180
>gi|262273344|ref|ZP_06051159.1| transcription antitermination protein NusG [Grimontia hollisae CIP
101886]
gi|262222717|gb|EEY74027.1| transcription antitermination protein NusG [Grimontia hollisae CIP
101886]
Length = 181
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAKSLKEHIKMHEMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H ++ P+V+GF+G T + P+P++D E + I+N++E A + PV
Sbjct: 68 YVLVQMLMNDESWHLVRSVPRVMGFIGGTPDRPAPISDKEADAILNRLEKASESPVHKTV 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 128 YEAGEVVRVTEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEK 180
>gi|119773342|ref|YP_926082.1| transcription antitermination protein NusG [Shewanella amazonensis
SB2B]
gi|119765842|gb|ABL98412.1| transcription antitermination protein nusG [Shewanella amazonensis
SB2B]
Length = 183
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVAKSLVEHIKMHGMEQYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P+TD E + I+ +++ + P V
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPITDREADAILRRLQETTESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK
Sbjct: 130 YEPGEVVRVVDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182
>gi|254512261|ref|ZP_05124328.1| transcription termination/antitermination factor NusG
[Rhodobacteraceae bacterium KLH11]
gi|221535972|gb|EEE38960.1| transcription termination/antitermination factor NusG
[Rhodobacteraceae bacterium KLH11]
Length = 177
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDDIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P
Sbjct: 61 MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPKLM 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDFTQVTK 175
>gi|254456595|ref|ZP_05070024.1| transcription termination/antitermination factor NusG [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083597|gb|EDZ61023.1| transcription termination/antitermination factor NusG [Candidatus
Pelagibacter sp. HTCC7211]
Length = 176
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 119/172 (69%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQ +S+ E K I ++ + EI +P+ V V++G++V ++++FPGY
Sbjct: 4 WYIVQSHSSFENKVAGLIKEEADKAKIGEKFEEIIVPTHDVTEVKRGKRVQRKKKYFPGY 63
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLIK+ M + +YH IK+ +V GFLG+ P PV+D EIE I+ Q++ V +P S + +
Sbjct: 64 VLIKSEMDNNIYHMIKNIKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIEYS 123
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK+
Sbjct: 124 VGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKV 175
>gi|77359188|ref|YP_338763.1| transcription antitermination factor [Pseudoalteromonas
haloplanktis TAC125]
gi|76874099|emb|CAI85320.1| component in transcription antitermination; couples translation and
transcription [Pseudoalteromonas haloplanktis TAC125]
Length = 185
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ ++I + GL+ E+ +P+E V+ +R G+K SER+FFPG
Sbjct: 11 RWYVVQAFSGYEKRVAQTILEHIKIKGLEESFGEVLVPTEEVIEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ M DK +H + T +V+GF+G T + P+P++ E E I+N+++ + P +
Sbjct: 71 YVLIQMDMNDKSWHLVNSTERVMGFIGGTSDRPAPISAKEAERILNRLQENAEAPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE+
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVEQ 183
>gi|310817023|ref|YP_003964987.1| transcription termination/antitermination factor NusG
[Ketogulonicigenium vulgare Y25]
gi|308755758|gb|ADO43687.1| transcription termination/antitermination factor NusG
[Ketogulonicigenium vulgare Y25]
Length = 177
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I +++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAETIRTKVAEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK +H + +V GFLG P P+ D+E+ I+N+V+ + P
Sbjct: 61 MPGYVLVHMEMSDKGFHLVSSINRVTGFLGPQGRPMPMRDAEVNAILNRVQDVAETPRIQ 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE+V V+DGPF F+G V+ VD + R+ V V IFGR TPVEL + QV+K
Sbjct: 121 VRFEIGEKVKVNDGPFEGFDGTVEEVDGDAQRLKVTVSIFGRATPVELEFTQVQK 175
>gi|237654008|ref|YP_002890322.1| transcription antitermination protein NusG [Thauera sp. MZ1T]
gi|237625255|gb|ACR01945.1| NusG antitermination factor [Thauera sp. MZ1T]
Length = 177
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK ++ R++RSG+ +I +P E V+ +R G+K +ER+F
Sbjct: 1 MSKRWYVVHAYSGFEKSVQRALIDRVNRSGMQDSFGQILVPVEEVIEMRGGQKTVTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +K TPKV GF+ GT P+P+++ E+E IM Q++ V +P
Sbjct: 61 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPAPISEKEVEKIMQQMQEGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE V V +GPF F+G V++ + EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEIGEVVRVKEGPFTDFHGSVEDANYEKNKLRVSVTIFGRATPVELDFAQVEK 176
>gi|326386500|ref|ZP_08208123.1| transcription antitermination protein nusG [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209161|gb|EGD59955.1| transcription antitermination protein nusG [Novosphingobium
nitrogenifigens DSM 19370]
Length = 178
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K E+I R GL LV + +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVREAIIAEAERKGLSQLVEAVEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL K M D +YH +K+T KV GFLGT P P+++ E + E A P + SV
Sbjct: 63 YVLAKLTMNDDIYHLVKNTAKVTGFLGTNNKPQPISEKEAQRYFGAREQAASEPSNHISV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G+ V V+ GPFASFNG+V+ +D EK RV V V IFGR TPVEL++ +VE
Sbjct: 123 DYEIGDSVKVNAGPFASFNGVVEELDFEKQRVKVSVSIFGRATPVELSFEEVE 175
>gi|99080068|ref|YP_612222.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
gi|259415894|ref|ZP_05739814.1| transcription termination/antitermination factor NusG [Silicibacter
sp. TrichCH4B]
gi|99036348|gb|ABF62960.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
gi|259347333|gb|EEW59110.1| transcription termination/antitermination factor NusG [Silicibacter
sp. TrichCH4B]
Length = 177
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 117/177 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVVEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K V
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTKQV 177
>gi|87198854|ref|YP_496111.1| transcription antitermination protein nusG [Novosphingobium
aromaticivorans DSM 12444]
gi|87134535|gb|ABD25277.1| transcription antitermination protein nusG [Novosphingobium
aromaticivorans DSM 12444]
Length = 178
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K ++I R GL LV + +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVRDAIIAEAERIGLSQLVEAVEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL K M D +YH +K+TPKV GFLGT P P++D E E A P SV
Sbjct: 63 YVLAKLAMNDDIYHLVKNTPKVTGFLGTNGKPQPISDKEAARYFGAREQAAAEPRKNVSV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G+ V V+ GPFASFNG+V+ +D +KSRV V V IFGR TPVEL + +VE
Sbjct: 123 DYEIGDSVKVNAGPFASFNGVVEELDFDKSRVKVSVSIFGRATPVELGFEEVE 175
>gi|257454929|ref|ZP_05620177.1| transcription termination/antitermination factor NusG
[Enhydrobacter aerosaccus SK60]
gi|257447639|gb|EEV22634.1| transcription termination/antitermination factor NusG
[Enhydrobacter aerosaccus SK60]
Length = 176
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ +S EK+ S+ R++RS ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 2 RWYIVQAFSGFEKQVQRSLIERINRSEYKESFGQVLVPTEEVIEMRDGKKRKSERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ M D +H +KD P+V+GF+ GT ENP+P+T E + I+N++ +P
Sbjct: 62 YVLIEMDMNDNTWHLVKDCPRVMGFIGGTPENPAPITPKEADTILNRLNTNENKPRPKTL 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+V+ VD EKSR+ + V +F R TPVEL + QVEKI
Sbjct: 122 FEPGEEVLVIDGPFTEFRGLVEKVDYEKSRLQLTVNVFNRPTPVELEFKQVEKI 175
>gi|114764160|ref|ZP_01443398.1| transcription termination/antitermination factor NusG [Pelagibaca
bermudensis HTCC2601]
gi|114543312|gb|EAU46328.1| transcription termination/antitermination factor NusG [Roseovarius
sp. HTCC2601]
Length = 177
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +V+ + + P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVESILGRVQESDEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G++++VD++ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMIESVDDDNQRLRVAVSIFGRETPVELEFTQVSK 175
>gi|110833234|ref|YP_692093.1| transcription antitermination protein NusG [Alcanivorax borkumensis
SK2]
gi|110646345|emb|CAL15821.1| transcription antitermination protein NusG [Alcanivorax borkumensis
SK2]
Length = 180
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK ++ R+ ++ L I +P+E VV ++ G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKYVKRALEERVKLRSMEELFGGILVPTEEVVEIKGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENP---SPVTDSEIEHIMNQVEAAVQR 116
FPGYVL++ M D +H IK+TPKV+GF+G +NP SP+T E + I+ +++ AV++
Sbjct: 61 FPGYVLVQMEMCDDSWHLIKETPKVMGFIGEDSKNPGRVSPITQKEADAILRRMDDAVEK 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P FE GE V V+DGPFA FNG+++ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 PKPKTLFEAGEVVRVNDGPFADFNGVIEEVNYEKSRLQVAVMIFGRSTPVELEFGQVEK 179
>gi|300309442|ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae
SmR1]
gi|300072227|gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae
SmR1]
Length = 196
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R++R+G+ +I +P+E VV ++ G K +ERRFFPG
Sbjct: 23 RWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+G N P+P+ E++ ++ Q++ V++P V
Sbjct: 83 YVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKVL 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + Q+EK+
Sbjct: 143 YEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196
>gi|260425721|ref|ZP_05779701.1| transcription termination/antitermination factor NusG [Citreicella
sp. SE45]
gi|260423661|gb|EEX16911.1| transcription termination/antitermination factor NusG [Citreicella
sp. SE45]
Length = 191
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 15 MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLQEQIDEVLVPTEEVIEVRRGKKVTTERRF 74
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +V+ P +
Sbjct: 75 MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVQETEDAPRTL 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GERV V+DGPF F+G+V+ VD++ R+ V V IFGR TPVEL + QV K
Sbjct: 135 IHFEIGERVKVNDGPFEGFDGMVEGVDDDNQRLRVSVSIFGRETPVELEFTQVSK 189
>gi|85710261|ref|ZP_01041326.1| transcription antiterminator [Erythrobacter sp. NAP1]
gi|85688971|gb|EAQ28975.1| transcription antiterminator [Erythrobacter sp. NAP1]
Length = 178
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K E+I R GL V EI +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVKEAIIAEADRLGLSEGVEEIEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL K M D +YH +K+TPKV GFLG P P+++ E VE A P + SV
Sbjct: 63 YVLAKLRMNDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKTQVSV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE
Sbjct: 123 DYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELDFEQVE 175
>gi|121606533|ref|YP_983862.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
gi|120595502|gb|ABM38941.1| transcription antitermination protein nusG [Polaromonas
naphthalenivorans CJ2]
Length = 198
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
+TP +WY+V YS EK A +I R++R+G+ +P+E VV ++ G+K +ER
Sbjct: 20 LTPGMQWYVVHAYSGMEKAAERNIVERINRAGMQSKFGRFLVPTEEVVEIKNGQKKTTER 79
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRP 117
RFFPGYVL++ VM D+ +H +K T KV GF+G +N P+P+++ E++ I++Q++ +P
Sbjct: 80 RFFPGYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQVGTDKP 139
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V DGPF FNG V+ V+ EK++V V V IFGR TPVEL ++Q+EK
Sbjct: 140 RHKVEFEAGEYVRVKDGPFTDFNGTVEEVNYEKNKVRVSVTIFGRATPVELEFSQIEK 197
>gi|85375046|ref|YP_459108.1| transcription antiterminator [Erythrobacter litoralis HTCC2594]
gi|84788129|gb|ABC64311.1| transcription antiterminator [Erythrobacter litoralis HTCC2594]
Length = 178
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K ++I R GL V E+ +P+E V +++G+KV +ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVRDAIIAEADRLGLSDGVEEVEVPTETVTEIKRGKKVQTERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--V 121
YVL K MTD +YH +K+TPKV GFLG P P+++ E VE A P V
Sbjct: 63 YVLAKLQMTDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKKDIQV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE
Sbjct: 123 DYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELEFEQVE 175
>gi|149186890|ref|ZP_01865199.1| transcription antiterminator [Erythrobacter sp. SD-21]
gi|148829399|gb|EDL47841.1| transcription antiterminator [Erythrobacter sp. SD-21]
Length = 178
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K +SI R GL V E+ +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVRDSIIAEAERLGLSEGVEEVQVPTETVTEVKRGKKVQIERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL K MTD VYH +K+TPKV GFLG P ++D E VE A P SV
Sbjct: 63 YVLAKLNMTDDVYHLVKNTPKVTGFLGNNNKPQAISDKEAARYFGGVEEAKSAPKKQVSV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G++V V DGPFASFNG+V+ +D +K +V V V IFGR TPVEL + QVE
Sbjct: 123 DYEIGDQVKVLDGPFASFNGLVEELDFDKQKVKVSVSIFGRATPVELEFEQVE 175
>gi|319791330|ref|YP_004152970.1| nusg antitermination factor [Variovorax paradoxus EPS]
gi|315593793|gb|ADU34859.1| NusG antitermination factor [Variovorax paradoxus EPS]
Length = 203
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 30 RWYVVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K T KV GF+G +N P+P++ E+E I++Q++ ++P V
Sbjct: 90 YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEDIVSQMQQGTEKPRHKVE 149
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V++V+ EKS+V V V+IFGR TPVEL ++QVEK
Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEDVNYEKSKVSVSVMIFGRSTPVELEFSQVEK 202
>gi|84515191|ref|ZP_01002554.1| transcription termination/antitermination factor NusG [Loktanella
vestfoldensis SKA53]
gi|84511350|gb|EAQ07804.1| transcription termination/antitermination factor NusG [Loktanella
vestfoldensis SKA53]
Length = 176
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + GL + E+ +P+E V+ VR+ +KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEAIRAKAEEKGLSDQIDEVLVPTEEVIEVRRNKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDSPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEYVDEEHQRLKVTVSIFGRATPVELEFTQVSK 175
>gi|212634816|ref|YP_002311341.1| transcription antitermination protein NusG [Shewanella
piezotolerans WP3]
gi|212556300|gb|ACJ28754.1| Transcription antitermination protein NusG [Shewanella
piezotolerans WP3]
Length = 183
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVCKSLNEHIKMHSMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++D E + I+ +++ + P V
Sbjct: 70 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTTESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 130 FEAGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182
>gi|255262997|ref|ZP_05342339.1| transcription termination/antitermination factor NusG
[Thalassiobium sp. R2A62]
gi|255105332|gb|EET48006.1| transcription termination/antitermination factor NusG
[Thalassiobium sp. R2A62]
Length = 177
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + + L + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVEEAELQDQIDEVLVPTEEVIEIRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMVEEVDEENLRLKVTVSIFGRATPVELEFTQVVK 175
>gi|88861455|ref|ZP_01136082.1| component in transcription antitermination; couples translation and
transcription [Pseudoalteromonas tunicata D2]
gi|88816537|gb|EAR26365.1| component in transcription antitermination; couples translation and
transcription [Pseudoalteromonas tunicata D2]
Length = 185
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S EK+ ++I + L+H EI +P+E VV +R G+K SER+FFPG
Sbjct: 11 RWYVIQAFSGFEKRVQQTILEHIRIQNLEHFFGEILVPTEEVVEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + P+V+GF+G T E P+P++ E + I+N+++ P +
Sbjct: 71 YVLVQMDMNDASWHLVNSIPRVMGFIGGTKERPAPISSKEADRILNRLQENADSPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
FE GE V V+DGPFA F G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFTGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182
>gi|84499877|ref|ZP_00998143.1| transcription termination/antitermination factor NusG [Oceanicola
batsensis HTCC2597]
gi|84391811|gb|EAQ04079.1| transcription termination/antitermination factor NusG [Oceanicola
batsensis HTCC2597]
Length = 177
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAENGLEDEIEEVLVPTEEVIEIRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M+D YH I +V GFLG P P+ D+E+ I+ +V ++P +
Sbjct: 61 MPGYVLVRMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVASILGRVAEGEEQPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F G+++ VD++ R+ V V IFGR TPVEL Y QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEDFTGMIEEVDDDNQRLKVSVSIFGRETPVELEYTQVTK 175
>gi|296315359|ref|ZP_06865300.1| transcription termination/antitermination factor NusG [Neisseria
polysaccharea ATCC 43768]
gi|296837688|gb|EFH21626.1| transcription termination/antitermination factor NusG [Neisseria
polysaccharea ATCC 43768]
Length = 178
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+G N P+P++ E E I+ QV+ +++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|294012699|ref|YP_003546159.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S]
gi|292676029|dbj|BAI97547.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S]
Length = 178
Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL K M D +YH +K+TPKV GFLG+ P ++++E +AA P +V
Sbjct: 63 YVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEAEAARYFGAQKAAEAAPKHKINV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 123 DYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175
>gi|83949812|ref|ZP_00958545.1| transcription termination/antitermination factor NusG [Roseovarius
nubinhibens ISM]
gi|83837711|gb|EAP77007.1| transcription termination/antitermination factor NusG [Roseovarius
nubinhibens ISM]
Length = 177
Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVTEQALEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEETPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD++ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMVEEVDDDNQRLKVTVSIFGRETPVELEFTQVAK 175
>gi|329118708|ref|ZP_08247408.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Neisseria bacilliformis ATCC BAA-1200]
gi|327465143|gb|EGF11428.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Neisseria bacilliformis ATCC BAA-1200]
Length = 177
Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++Q YS EK +++ R+ R ++ EI +P E VV ++ GR+ SER+F
Sbjct: 1 MAKQWYVIQAYSGFEKNVQKTLKERIIRENMEQYFGEILVPVEEVVDIKNGRRTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D +H +K TP+V GF+G N P P++ E+E IM QV+ ++P
Sbjct: 61 FPGYVLVEMEMSDDSWHLVKSTPRVSGFVGGVANRPLPISQKEVETIMAQVQVDGEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+G+RV V++GPFA FNGIV+ V+ E++++ V V IFGR TPVEL + QVEK
Sbjct: 121 RVSFEIGQRVRVNEGPFADFNGIVEEVNYERNKLRVSVQIFGRETPVELEFGQVEK 176
>gi|254486647|ref|ZP_05099852.1| transcription termination/antitermination factor NusG [Roseobacter
sp. GAI101]
gi|214043516|gb|EEB84154.1| transcription termination/antitermination factor NusG [Roseobacter
sp. GAI101]
Length = 177
Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGERV V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGERVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177
>gi|21672333|ref|NP_660400.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25008872|sp|Q8KA65|NUSG_BUCAP RecName: Full=Transcription antitermination protein nusG
gi|21622935|gb|AAM67611.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 181
Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++Q +S E + +SI + + ++ E+ +PSE V+ +R G++ SE +F
Sbjct: 5 LKKKWYVLQAFSGFESRVAQSIKEHVKLNKMNDFFGEVMVPSEEVIEIRGGQRRKSEYKF 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVLI +MTD +H I++ P+V+GF+G + PSP++D E++ I+N++ +P
Sbjct: 65 FPGYVLIHMIMTDSTWHLIRNVPRVLGFIGGKSDKPSPISDKEVDIIINRLRQIGDKPRP 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 125 KTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFRQVEK 180
>gi|258543809|ref|ZP_05704043.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Cardiobacterium hominis ATCC 15826]
gi|258520938|gb|EEV89797.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Cardiobacterium hominis ATCC 15826]
Length = 178
Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY++Q YS E + ++ R+ R GL +I IPSE VV ++ G+K NS+R+F
Sbjct: 1 MSKQWYVLQTYSQFEGQVKRALMERIEREGLQDSFGQILIPSEEVVEIKDGKKRNSQRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP YVL++ M D +H ++ P+V GF+G T E+P+P+ E+E I+ ++E +++P
Sbjct: 61 FPNYVLVEMEMNDTTWHVVRSIPRVSGFVGGTAESPAPIPAHEVEAILRRIEEGIEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V + DGPFA F G V+ V EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEVGEEVRIIDGPFAEFMGTVEEVMYEKSRLKVSVLIFGRPTPVELEFHQVEK 176
>gi|126737141|ref|ZP_01752876.1| transcription termination/antitermination factor NusG [Roseobacter
sp. SK209-2-6]
gi|126721726|gb|EBA18429.1| transcription termination/antitermination factor NusG [Roseobacter
sp. SK209-2-6]
Length = 177
Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|296282315|ref|ZP_06860313.1| NusG antitermination factor [Citromicrobium bathyomarinum JL354]
Length = 178
Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K ++I R GL V E+ +P+E V +++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVRDAIISEAERLGLSEGVEEVEVPTETVTELKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL K MTD +YH +K+TPKV GFLG G P +++ E VE A P S+
Sbjct: 63 YVLAKLNMTDDIYHLVKNTPKVTGFLGAGNKPQAISEKEAARYFGGVEEAKAAPKQQVSI 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+E+G++V V DGPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE
Sbjct: 123 DYEIGDQVKVLDGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVE 175
>gi|163745521|ref|ZP_02152881.1| transcription antitermination protein NusG [Oceanibulbus indolifex
HEL-45]
gi|161382339|gb|EDQ06748.1| transcription antitermination protein NusG [Oceanibulbus indolifex
HEL-45]
Length = 177
Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRASVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+++ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVADGPFEDFDGMIEEVDEDNQRLKVSVSIFGRETPVELEFTQVNK 175
>gi|126734758|ref|ZP_01750504.1| transcription antitermination protein NusG [Roseobacter sp. CCS2]
gi|126715313|gb|EBA12178.1| transcription antitermination protein NusG [Roseobacter sp. CCS2]
Length = 176
Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + GL + E+ +P+E V+ +R+ +KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEAIRQKADEQGLSDQIDEVLVPTEEVIEIRRNKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VD+E R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRATPVELEFTQVSK 175
>gi|326319231|ref|YP_004236903.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323376067|gb|ADX48336.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 197
Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 24 RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E++ I+NQ++ +P +
Sbjct: 84 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196
>gi|257095052|ref|YP_003168693.1| transcription antitermination protein NusG [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047576|gb|ACV36764.1| NusG antitermination factor [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 177
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK ++ R+ R G++ I +P E VV ++ G+K SER+F
Sbjct: 1 MSMRWYVVHAYSGFEKSVQRALLERIQRQGMEESFGRILVPVEEVVELKMGQKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D +H +K TPKV GF+G T PSP+++ E+ IM Q++ V +P
Sbjct: 61 FPGYVLVEMEMNDDSWHLVKSTPKVTGFVGGTANKPSPISEKEVAKIMQQMQEGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V DGPF F+G V+ V+ EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEVVRVKDGPFTDFHGAVEQVNYEKNRLRVSVTIFGRPTPVELEFAQVEK 176
>gi|119468180|ref|ZP_01611306.1| component in transcription antitermination; couples translation and
transcription [Alteromonadales bacterium TW-7]
gi|119448173|gb|EAW29437.1| component in transcription antitermination; couples translation and
transcription [Alteromonadales bacterium TW-7]
Length = 185
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ +++ + GL+ EI +P+E VV +R G+K SER+FFPG
Sbjct: 11 RWYVVQAFSGYEKRVAQTLTEHIKIEGLEESFGEILVPTEEVVEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + T +V+GF+G T + P+P++ E + I+N+++ + P +
Sbjct: 71 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE+
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVEQ 183
>gi|325203246|gb|ADY98699.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M01-240355]
Length = 178
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK + R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+G N P+P++ E E I+ QV+ +++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQKEAEIILQQVQTGIEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177
>gi|94500508|ref|ZP_01307039.1| transcription antitermination protein NusG [Oceanobacter sp. RED65]
gi|94427298|gb|EAT12277.1| transcription antitermination protein NusG [Oceanobacter sp. RED65]
Length = 179
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 117/177 (66%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK+ + S+ ++ +G+ E+ +P+E V+ +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKRVMNSLKEQIEINGMQDCFGEVLVPTEEVIEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQV-EAAVQRPV 118
+PGYVL++ M D +H +K+TP+V+GF+ GT + P+P+T E + I+ +V E +P
Sbjct: 61 YPGYVLVEMDMNDATWHLVKETPRVLGFIGGTADKPAPITKREADAILQRVKEGEEGQPT 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE + V DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 HKTIYEPGEMIRVIDGPFADFNGVVETVDYEKSRLKVAVTIFGRSTPVELEFGQVEK 177
>gi|120613169|ref|YP_972847.1| transcription antitermination protein nusG [Acidovorax citrulli
AAC00-1]
gi|120591633|gb|ABM35073.1| transcription antitermination protein nusG [Acidovorax citrulli
AAC00-1]
Length = 197
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 24 RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E++ I+NQ++ +P +
Sbjct: 84 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196
>gi|117918645|ref|YP_867837.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
gi|117610977|gb|ABK46431.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
Length = 183
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++D E + I+ +++ P V
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRVI 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK
Sbjct: 130 FEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182
>gi|15676054|ref|NP_273184.1| transcription antitermination protein NusG [Neisseria meningitidis
MC58]
gi|59802177|ref|YP_208889.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
FA 1090]
gi|121634004|ref|YP_974249.1| transcription antitermination protein NusG [Neisseria meningitidis
FAM18]
gi|218767186|ref|YP_002341698.1| transcription antitermination protein NusG [Neisseria meningitidis
Z2491]
gi|239997908|ref|ZP_04717832.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
35/02]
gi|240015113|ref|ZP_04722026.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
DGI18]
gi|240017562|ref|ZP_04724102.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
FA6140]
gi|240081705|ref|ZP_04726248.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
FA19]
gi|240113981|ref|ZP_04728471.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
MS11]
gi|240116717|ref|ZP_04730779.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID18]
gi|240118939|ref|ZP_04733001.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID1]
gi|240122184|ref|ZP_04735146.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID24-1]
gi|240124477|ref|ZP_04737433.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID332]
gi|240124655|ref|ZP_04737541.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
SK-92-679]
gi|240129151|ref|ZP_04741812.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
SK-93-1035]
gi|254494738|ref|ZP_05107909.1| transcription antitermination protein [Neisseria gonorrhoeae 1291]
gi|254805828|ref|YP_003084049.1| putative transcription antitermination protein [Neisseria
meningitidis alpha14]
gi|260439524|ref|ZP_05793340.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
DGI2]
gi|268593758|ref|ZP_06127925.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
35/02]
gi|268597803|ref|ZP_06131970.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
FA19]
gi|268600046|ref|ZP_06134213.1| transcription antitermination protein [Neisseria gonorrhoeae MS11]
gi|268602388|ref|ZP_06136555.1| transcription antitermination protein [Neisseria gonorrhoeae PID18]
gi|268604650|ref|ZP_06138817.1| transcription antitermination protein [Neisseria gonorrhoeae PID1]
gi|268683108|ref|ZP_06149970.1| transcription antitermination protein [Neisseria gonorrhoeae
PID332]
gi|268683229|ref|ZP_06150091.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-92-679]
gi|268687535|ref|ZP_06154397.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-93-1035]
gi|291042759|ref|ZP_06568500.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
DGI2]
gi|293398220|ref|ZP_06642425.1| transcription termination/antitermination factor NusG [Neisseria
gonorrhoeae F62]
gi|304388927|ref|ZP_07370974.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis ATCC 13091]
gi|54037929|sp|P65592|NUSG_NEIMB RecName: Full=Transcription antitermination protein nusG
gi|54041679|sp|P65591|NUSG_NEIMA RecName: Full=Transcription antitermination protein nusG
gi|7225343|gb|AAF40585.1| transcription antitermination protein NusG [Neisseria meningitidis
MC58]
gi|59719072|gb|AAW90477.1| putative transcription antitermination protein [Neisseria
gonorrhoeae FA 1090]
gi|120865710|emb|CAM09437.1| transcription antitermination protein [Neisseria meningitidis
FAM18]
gi|121051194|emb|CAM07465.1| transcription antitermination protein [Neisseria meningitidis
Z2491]
gi|226513778|gb|EEH63123.1| transcription antitermination protein [Neisseria gonorrhoeae 1291]
gi|254669370|emb|CBA08487.1| putative transcription antitermination protein [Neisseria
meningitidis alpha14]
gi|261391664|emb|CAX49112.1| transcription antitermination protein NusG [Neisseria meningitidis
8013]
gi|268547147|gb|EEZ42565.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
35/02]
gi|268551591|gb|EEZ46610.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
FA19]
gi|268584177|gb|EEZ48853.1| transcription antitermination protein [Neisseria gonorrhoeae MS11]
gi|268586519|gb|EEZ51195.1| transcription antitermination protein [Neisseria gonorrhoeae PID18]
gi|268588781|gb|EEZ53457.1| transcription antitermination protein [Neisseria gonorrhoeae PID1]
gi|268623392|gb|EEZ55792.1| transcription antitermination protein [Neisseria gonorrhoeae
PID332]
gi|268623513|gb|EEZ55913.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-92-679]
gi|268627819|gb|EEZ60219.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-93-1035]
gi|291013193|gb|EFE05159.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
DGI2]
gi|291611483|gb|EFF40553.1| transcription termination/antitermination factor NusG [Neisseria
gonorrhoeae F62]
gi|304337061|gb|EFM03248.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis ATCC 13091]
gi|308388344|gb|ADO30664.1| transcription antitermination protein [Neisseria meningitidis
alpha710]
gi|319411391|emb|CBY91802.1| transcription antitermination protein NusG [Neisseria meningitidis
WUE 2594]
gi|325127120|gb|EGC50074.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis N1568]
gi|325133040|gb|EGC55712.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M6190]
gi|325135132|gb|EGC57758.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M13399]
gi|325137185|gb|EGC59780.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M0579]
gi|325139019|gb|EGC61565.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis ES14902]
gi|325141141|gb|EGC63641.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis CU385]
gi|325145324|gb|EGC67601.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M01-240013]
gi|325197415|gb|ADY92871.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis G2136]
gi|325199340|gb|ADY94795.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis H44/76]
gi|325203039|gb|ADY98493.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M01-240149]
gi|325205219|gb|ADZ00672.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M04-240196]
gi|325207162|gb|ADZ02614.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis NZ-05/33]
Length = 178
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK + R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+G N P+P++ E E I+ QV+ +++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177
>gi|254477580|ref|ZP_05090966.1| transcription termination/antitermination factor NusG [Ruegeria sp.
R11]
gi|214031823|gb|EEB72658.1| transcription termination/antitermination factor NusG [Ruegeria sp.
R11]
Length = 177
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEHGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|94497192|ref|ZP_01303764.1| NusG antitermination factor [Sphingomonas sp. SKA58]
gi|94423297|gb|EAT08326.1| NusG antitermination factor [Sphingomonas sp. SKA58]
Length = 178
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFESKVKESILAEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQRPVSS 120
YVL K M D +YH +K+TPKV GFLG+ P +++ E + EAA + V +
Sbjct: 63 YVLAKLSMNDDIYHLVKNTPKVTGFLGSSGKPQAISEGEAARYFGAQKEAEAAPKHKV-N 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V +E+G+ V V DGPFASFNG+V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 122 VDYEIGDSVKVLDGPFASFNGVVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175
>gi|307297143|ref|ZP_07576957.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1]
gi|306877447|gb|EFN08677.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1]
Length = 178
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQRPVSS 120
YVL K M D +YH +K+TPKV GFLG+ P +++++ + EAA + + S
Sbjct: 63 YVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEADAARYFGAQKEAEAAPKHKI-S 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 122 VDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175
>gi|86137179|ref|ZP_01055757.1| transcription termination/antitermination factor NusG [Roseobacter
sp. MED193]
gi|85826503|gb|EAQ46700.1| transcription termination/antitermination factor NusG [Roseobacter
sp. MED193]
Length = 177
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQRLEDEIDEVLVPTEEVIEIRRGKKVPTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+G++V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL Y QV K
Sbjct: 121 ISFEIGDKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDYTQVTK 175
>gi|83854994|ref|ZP_00948524.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. NAS-14.1]
gi|83842837|gb|EAP82004.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. NAS-14.1]
Length = 177
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGEKVKVTDGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177
>gi|83941516|ref|ZP_00953978.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. EE-36]
gi|83847336|gb|EAP85211.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. EE-36]
Length = 177
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177
>gi|332037819|gb|EGI74269.1| transcription antitermination protein NusG [Pseudoalteromonas
haloplanktis ANT/505]
Length = 187
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ +++ + GL+ EI +P+E VV +R G+K SER+FFPG
Sbjct: 13 RWYVVQAFSGYEKRVAQTLIEHIKIEGLESSFGEILVPTEEVVEMRAGQKRKSERKFFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + T +V+GF+G T + P+P++ E E I+N+++ + P +
Sbjct: 73 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISPKEAERILNRLQENAEAPKPATL 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE+
Sbjct: 133 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVEQ 185
>gi|313667421|ref|YP_004047705.1| transcription antitermination protein [Neisseria lactamica ST-640]
gi|313004883|emb|CBN86309.1| transcription antitermination protein [Neisseria lactamica 020-06]
Length = 178
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD ++ +K TP+V GF+G T P P++ E E I+ QV+A ++P
Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQAGAEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|239813602|ref|YP_002942512.1| NusG antitermination factor [Variovorax paradoxus S110]
gi|239800179|gb|ACS17246.1| NusG antitermination factor [Variovorax paradoxus S110]
Length = 203
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 30 RWYVVHAYSGMEKAVERNIIERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K T KV GF+G +N P+P++ E+E I++Q++ ++P V
Sbjct: 90 YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEGIVSQMQQGTEKPRHKVE 149
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EKS+V V V+IFGR TPVEL ++QVEK
Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEEVNYEKSKVSVSVMIFGRATPVELEFSQVEK 202
>gi|71892331|ref|YP_278065.1| transcription antitermination protein [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796437|gb|AAZ41188.1| transcription antitermination protein [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 181
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + S+ + +D + EI +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVIQAFSGFENRVAHSLREHIKLHNMDTMFGEIMVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D +H +K P+V+GF+G T + P+P+ D E+ IM++++ +P
Sbjct: 68 YVLVQMIMNDSSWHLVKSVPRVMGFVGGTCDKPAPIGDKEVNDIMHRLQQIGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVELDFSQVEK 180
>gi|329897158|ref|ZP_08271899.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC3088]
gi|328921375|gb|EGG28768.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC3088]
Length = 177
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EKK ++ R+ + ++ +P+E VV ++ G+K SER+F
Sbjct: 1 MSMRWYVVHAYSGYEKKVATALKERIDLHAMGDRFGDVLVPTEEVVEMKNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I+ +VE ++P
Sbjct: 61 FPGYVLVQMELDDDTWHLVKETPRVMGFIGGKADAPAPITDAEAQAILRRVEDGTEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF F G+V+ V+ EKSR++V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEMVRVVDGPFNDFYGVVEEVNYEKSRLNVAVLIFGRSTPVELEFSQVEK 176
>gi|94971707|ref|YP_593755.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
gi|94553757|gb|ABF43681.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
Length = 199
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 118/174 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R+ GL+ + + IP+E V VR G+K SER F+PG
Sbjct: 25 KWYIIHSYSGFERKVKESLESRIHAFGLEGKIGRVLIPTESVTEVRGGKKYTSERMFYPG 84
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ M D V+H +K TP+V GF+GTG+ P+P+++ E++ I+ +V + ++P V +
Sbjct: 85 YVLVEMDMDDNVWHVVKSTPRVTGFVGTGQQPTPLSEEEVQQIVYRVADSREKPKLKVKY 144
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E E V +S+GPFA+F G+V V+E+K + V V IFGR TPVEL + QVEK++
Sbjct: 145 EKNETVRISEGPFATFQGVVDEVNEDKETLKVMVTIFGRSTPVELEFGQVEKVL 198
>gi|114561324|ref|YP_748837.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400]
gi|114332617|gb|ABI69999.1| transcription antitermination protein nusG [Shewanella
frigidimarina NCIMB 400]
Length = 183
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++++ + ++ EI +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVIQAFSGYEGRVLKTLLEHIKMHNMEEYFGEILVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++D E + I+ +++ V+ P +
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRIM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG ++ VD EK+R+ V V+IFGR TPVEL +NQVEK
Sbjct: 130 YEPGEVVRVCDGPFADFNGTIEEVDYEKNRIKVSVMIFGRSTPVELDFNQVEK 182
>gi|163740207|ref|ZP_02147601.1| transcription termination/antitermination factor NusG [Phaeobacter
gallaeciensis 2.10]
gi|161386065|gb|EDQ10440.1| transcription termination/antitermination factor NusG [Phaeobacter
gallaeciensis 2.10]
Length = 177
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|163739418|ref|ZP_02146828.1| NusG antitermination factor [Phaeobacter gallaeciensis BS107]
gi|161387171|gb|EDQ11530.1| transcription antitermination protein [Phaeobacter gallaeciensis
BS107]
Length = 177
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|168830297|gb|ACA34394.1| NusG [uncultured bacterium pTW2]
Length = 200
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ R+G++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 18 RWYVVHAYSGFEKSVAQALRDRIVRTGMEDRFGDVMVPTEEVIEMRAGQKRRSERKFFPG 77
Query: 64 YVLIKAVMTDK---------VYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ V D+ +H IK+TPKV+GF+G T + P P+ D E I+++V+
Sbjct: 78 YVLVQIVTHDEGGIPRIDSESWHLIKETPKVMGFIGGTADKPLPIRDDEAAAILDRVQEG 137
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V DGPF FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QV
Sbjct: 138 VEKPRPKVLFEAGQMVRVVDGPFNDFNGVVEEVNYDKSRLRVAVLIFGRSTPVELEFGQV 197
Query: 174 EK 175
EK
Sbjct: 198 EK 199
>gi|78484628|ref|YP_390553.1| NusG antitermination factor [Thiomicrospira crunogena XCL-2]
gi|78362914|gb|ABB40879.1| transcription antitermination protein nusG [Thiomicrospira
crunogena XCL-2]
Length = 177
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K + + + R+GL +I +PSE VV +R+G+K SER+F
Sbjct: 1 MAQRWYVVHAYSGYENKVKKGLSEYIERAGLQDSFGQILVPSEEVVEIREGKKRTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +K P+V+GF+ GT + P+P++ E++ I+ +VE V +P
Sbjct: 61 FPGYVLVQMEMNEDTWHLVKSVPQVMGFIGGTSDRPAPISQKEVDRILQKVEEGVDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +E GE V V DGPF F +V+ VD +K+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVIYEPGEMVRVIDGPFNDFEAVVEGVDYDKNKLQVSVLIFGRSTPVELEFTQVEK 176
>gi|239993447|ref|ZP_04713971.1| transcription termination/antitermination factor NusG [Alteromonas
macleodii ATCC 27126]
Length = 183
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ YS E + +++ + ++ ++ +P+E VV +R G+K SER+F+PG
Sbjct: 10 RWYVVQAYSQYESRVKKTLLEYIKMHNMEDYFGQVLVPTEEVVEMRAGQKRKSERKFYPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MT++ +H +K P+V+GF+G T + P P+T E + I+N++E V +P
Sbjct: 70 YVLVEMAMTEESWHLVKSVPRVLGFIGGTSDRPMPITQKEADAILNRLEENVDKPRPKTL 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L + QVEK
Sbjct: 130 FEPGEVIRVIDGPFADFNGVVEEVDYEKSRVKVSVLIFGRSTPVDLEFGQVEK 182
>gi|332040082|gb|EGI76467.1| NusG antitermination factor [Hylemonella gracilis ATCC 19624]
Length = 195
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++R+GL I +P E VV V+ G+K +ER+FFPG
Sbjct: 21 RWYVVHAYSGMEKAVERNILERINRAGLQGKFGRILVPMEEVVEVKNGQKRTTERKFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YVL++ VM D+ +H +K T KV GF+G G+N P+P+++ E+ I+NQ++ +P V
Sbjct: 81 YVLVEMVMDDESWHLVKHTSKVTGFVGGGKNNRPTPISEEEVMKIVNQMQEGSDKPRHKV 140
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 141 EFTVGELVRVKEGPFTDFNGAVEEVNYEKSKVRVAVTIFGRSTPVELEFGQVEK 194
>gi|225024700|ref|ZP_03713892.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC
23834]
gi|224942526|gb|EEG23735.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC
23834]
Length = 180
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 123/180 (68%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++Q YS EK +++ R++R G++ L +I +P E VV ++ GRK SER+F
Sbjct: 1 MAKNWYVIQAYSGFEKNVQKTLKERIAREGMEGLFGQILVPVEEVVGIKNGRKTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAV---QR 116
FPGYVLI+ MTD+ +H +K TP+V GF+ GT P P++ E++ I++QV A ++
Sbjct: 61 FPGYVLIEMEMTDESWHLVKSTPRVNGFIGGTANRPLPISQREVDAIISQVLAVAGSEKK 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
P V F VG+++ VS+GPF+ FNG+V VD E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 PKPRVEFMVGQQIRVSEGPFSDFNGLVDVVDYERNKLRVLVQIFGRETPVELDFSQVEKI 180
>gi|294668287|ref|ZP_06733391.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309741|gb|EFE50984.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 177
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK +++ R+ R G+ +I +P+E VV ++ GR+ SER+F
Sbjct: 1 MSKKWYVVQAYSGFEKNVQKALKDRIEREGMGTSFGKILVPTEEVVDIKNGRRTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D +H ++ TP+V GF+G N P P++ E++ I+ Q++ +P
Sbjct: 61 FPGYVLVEMEMSDDSWHLVRSTPRVSGFVGGEANRPLPISQREVDSILAQIQIGGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVG++V V++GPFA FNGIV V+ E+S++ V V IFGR TPVEL + QVEK
Sbjct: 121 RVEFEVGQQVRVTEGPFADFNGIVSEVNYERSKLRVSVQIFGRETPVELDFGQVEK 176
>gi|115378476|ref|ZP_01465635.1| transcription termination/antitermination factor NusG [Stigmatella
aurantiaca DW4/3-1]
gi|310822265|ref|YP_003954623.1| transcription antitermination protein NusG [Stigmatella aurantiaca
DW4/3-1]
gi|115364538|gb|EAU63614.1| transcription termination/antitermination factor NusG [Stigmatella
aurantiaca DW4/3-1]
gi|309395337|gb|ADO72796.1| Transcription antitermination protein NusG [Stigmatella aurantiaca
DW4/3-1]
Length = 180
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YSN E +A +S+ ++ GL EI IP E+VV + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSNFENQAKKSLEEKIRLEGLQDQFGEILIPMEQVVEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+ ++ + D+ +H +K+TPK+ GF G +N P+P++D+E+ + +Q+ +P
Sbjct: 61 FPGYIFVQMDLNDRTWHLVKNTPKITGFPGAAQNQQPTPISDAEVARLTSQISEGTLKPK 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK
Sbjct: 121 PKVQFEDGDTVRVIDGPFANFNGTVEEVNPEKGRVKVLVSIFGRATPVELDFMQVEK 177
>gi|315125336|ref|YP_004067339.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913]
gi|315013849|gb|ADT67187.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913]
Length = 185
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ +++ + GL+ E+ +P+E VV +R G+K SER+FFPG
Sbjct: 11 RWYVVQAFSGYEKRVAQTLLEHIKIKGLEDSFGEVLVPTEEVVEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + T +V+GF+G T + P+P++ E + I+N+++ + P +
Sbjct: 71 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE+
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVEQ 183
>gi|120596977|ref|YP_961551.1| NusG antitermination factor [Shewanella sp. W3-18-1]
gi|146294853|ref|YP_001185277.1| NusG antitermination factor [Shewanella putrefaciens CN-32]
gi|120557070|gb|ABM22997.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1]
gi|145566543|gb|ABP77478.1| transcription antitermination protein nusG [Shewanella putrefaciens
CN-32]
gi|319424568|gb|ADV52642.1| NusG antitermination factor [Shewanella putrefaciens 200]
Length = 183
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++D E + I+ +++ P V
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRVI 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 130 FEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
>gi|168823324|ref|ZP_02835324.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205340452|gb|EDZ27216.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
Length = 177
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173
>gi|170729021|ref|YP_001763047.1| NusG antitermination factor [Shewanella woodyi ATCC 51908]
gi|169814368|gb|ACA88952.1| NusG antitermination factor [Shewanella woodyi ATCC 51908]
Length = 183
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +++ + ++ EI +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVTKTLHEYIQMHSMEQYFGEILVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++D E I+ +++ + P V
Sbjct: 70 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEANAILQRLQETTETPTHRVI 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK
Sbjct: 130 FEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182
>gi|24371817|ref|NP_715859.1| transcription antitermination protein NusG [Shewanella oneidensis
MR-1]
gi|113968532|ref|YP_732325.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|114045695|ref|YP_736245.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
gi|24345622|gb|AAN53304.1|AE015471_9 transcription antitermination protein NusG [Shewanella oneidensis
MR-1]
gi|113883216|gb|ABI37268.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|113887137|gb|ABI41188.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
Length = 183
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++D E + I+ +++ P V
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRVI 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 130 FEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
>gi|269103670|ref|ZP_06156367.1| transcription antitermination protein NusG [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163568|gb|EEZ42064.1| transcription antitermination protein NusG [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 170
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
+Q +S E + +S+ + G++ E+ +P+E VV VR G++ SER+FFPGYVL+
Sbjct: 1 MQAFSGFEGRVAQSLREHIKMHGMEEYFEEVLVPTEEVVEVRAGQRRKSERKFFPGYVLV 60
Query: 68 KAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
+ VM D+ +H ++ P+V+GF+G T + P+P++D E + I+N+++ A + PV FE G
Sbjct: 61 QMVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQKASESPVHKTVFEPG 120
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E V V+DGPFA FNG+V+ VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 121 EVVRVTDGPFADFNGVVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEK 169
>gi|89095350|ref|ZP_01168267.1| transcription antitermination protein NusG [Oceanospirillum sp.
MED92]
gi|89080392|gb|EAR59647.1| transcription antitermination protein NusG [Oceanospirillum sp.
MED92]
Length = 177
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RW++V YS EK+ + ++ R+ + L E+ +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWFVVHAYSGYEKRVMNTLKERIELHSMQDLFGEVLVPTEEVVEIRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL+ M D+ +H +K+TP V+GF+ GT P+P+T++E I+++VE+ V +P
Sbjct: 61 YPGYVLVHMDMNDESWHLVKNTPHVLGFIGGTAGKPAPITEAEANEILSRVESGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA F+ +V+ ++ EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFADFDAVVEEINYEKNKLQVAVQIFGRTTPVELDFIQVEK 176
>gi|264676489|ref|YP_003276395.1| NusG antitermination factor [Comamonas testosteroni CNB-2]
gi|299531364|ref|ZP_07044774.1| transcription termination/antitermination factor NusG [Comamonas
testosteroni S44]
gi|262207001|gb|ACY31099.1| NusG antitermination factor [Comamonas testosteroni CNB-2]
gi|298720771|gb|EFI61718.1| transcription termination/antitermination factor NusG [Comamonas
testosteroni S44]
Length = 195
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RS + I +PSE VV +R G + +ERR FPG
Sbjct: 22 RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E+ I++Q++ ++P V
Sbjct: 82 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194
>gi|221069403|ref|ZP_03545508.1| NusG antitermination factor [Comamonas testosteroni KF-1]
gi|220714426|gb|EED69794.1| NusG antitermination factor [Comamonas testosteroni KF-1]
Length = 195
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RS + I +PSE VV +R G + +ERR FPG
Sbjct: 22 RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E+ I++Q++ ++P V
Sbjct: 82 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194
>gi|171060542|ref|YP_001792891.1| NusG antitermination factor [Leptothrix cholodnii SP-6]
gi|170777987|gb|ACB36126.1| NusG antitermination factor [Leptothrix cholodnii SP-6]
Length = 188
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ RSG+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 15 RWYVVHAYSGMEKAVERNLRERIDRSGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K+T KV GF+G +N P+P+++ E+ I+ Q++ +++P V
Sbjct: 75 YVLVEMLMDDESWHLVKNTSKVTGFVGGAKNRPTPISEDEVMKIVTQMQEGIEKPRPKVE 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V +GPF FNG V+ V+ +K++V V V IFGR TPVEL ++QVEK+
Sbjct: 135 WEVGEVVRVKEGPFTDFNGSVEEVNYDKNKVRVSVTIFGRATPVELDFHQVEKV 188
>gi|74316411|ref|YP_314151.1| transcription antitermination protein nusG [Thiobacillus
denitrificans ATCC 25259]
gi|74055906|gb|AAZ96346.1| NusG antitermination factor [Thiobacillus denitrificans ATCC 25259]
Length = 187
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 119/185 (64%), Gaps = 13/185 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH----LVTE--------ITIPSERVVSVRKG 51
RWY+V YS EK ++ R+ R+G+ +V E I +P E VV +R G
Sbjct: 2 RWYVVHAYSGFEKSVARALEERIERAGMRDRFGVIVDEKTGKPRPAIMVPVEEVVEMRAG 61
Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQV 110
+K +ER+FFPGYVL++ M D +H +K TPKV GF+G T P+P+++ E++ I++Q+
Sbjct: 62 QKKTAERKFFPGYVLVQMEMDDDTWHLVKSTPKVTGFVGGTATKPAPISEKEVQAILDQM 121
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
V++P V FEVGE+V V DGPF FNG V+ V+ +KS++ V V+IFGR TPVEL +
Sbjct: 122 REGVEKPKPKVLFEVGEQVRVIDGPFTDFNGNVEEVNYDKSKLRVSVMIFGRATPVELGF 181
Query: 171 NQVEK 175
QVEK
Sbjct: 182 GQVEK 186
>gi|126090327|ref|YP_001041770.1| NusG antitermination factor [Shewanella baltica OS155]
gi|152998737|ref|YP_001364418.1| NusG antitermination factor [Shewanella baltica OS185]
gi|160873314|ref|YP_001552630.1| NusG antitermination factor [Shewanella baltica OS195]
gi|217975213|ref|YP_002359964.1| NusG antitermination factor [Shewanella baltica OS223]
gi|304412753|ref|ZP_07394355.1| NusG antitermination factor [Shewanella baltica OS183]
gi|307307417|ref|ZP_07587152.1| NusG antitermination factor [Shewanella baltica BA175]
gi|125999947|gb|ABN64015.1| transcription antitermination protein nusG [Shewanella baltica
OS155]
gi|151363355|gb|ABS06355.1| NusG antitermination factor [Shewanella baltica OS185]
gi|160858836|gb|ABX47370.1| NusG antitermination factor [Shewanella baltica OS195]
gi|217500348|gb|ACK48541.1| NusG antitermination factor [Shewanella baltica OS223]
gi|304348833|gb|EFM13249.1| NusG antitermination factor [Shewanella baltica OS183]
gi|306910205|gb|EFN40638.1| NusG antitermination factor [Shewanella baltica BA175]
gi|315265541|gb|ADT92394.1| NusG antitermination factor [Shewanella baltica OS678]
Length = 183
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVCKSLIEYIKMHGMEEYFGEVLVPTEEVIEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++D E + I+ +++ P
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRTI 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 130 FEPGELVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
>gi|158520714|ref|YP_001528584.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3]
gi|158509540|gb|ABW66507.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3]
Length = 176
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 118/176 (67%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V VYS E K +S+ R++ SG E+ +P+E+VV + KG+K S R+F
Sbjct: 1 MALKWYVVHVYSGFENKVQKSLEDRIASSGCAEKFGEVIVPTEQVVELVKGKKKESSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D+ +H + +T KV GFLG P+P+TD E + I+ ++EA +P
Sbjct: 61 YPGYILVQMELDDETWHVVANTAKVTGFLGGKNKPAPITDQEADKILERIEAGKLKPQPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V++GPFA+F+G+V+ V++EK ++ V V IFGR TPVEL + QV K+
Sbjct: 121 YSFEVGDEVRVTEGPFATFSGLVETVNQEKGKLRVLVSIFGRSTPVELDFMQVAKL 176
>gi|238897918|ref|YP_002923597.1| component in transcription antitermination [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465675|gb|ACQ67449.1| component in transcription antitermination [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 179
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + ++ ++ +P+E VV VR G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFESRVKQSLHEHIKLHSMEDYFGDVMVPTEEVVEVRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +M D +H ++ P+V+GF+G G P+P+TD E + I+N+++ +P F
Sbjct: 68 YVLVQMIMNDASWHLVRSVPRVMGFIG-GIVPTPITDKEADAIINRLQQTTDKPRPKTLF 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++Q+EK
Sbjct: 127 EPGELVRVNEGPFAEFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQIEK 178
>gi|332172374|gb|AEE21628.1| NusG antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 190
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQ +S E + +++ + ++ EI +P+E V+ +R G++ SER+FFPG
Sbjct: 17 KWYVVQAFSQYEGRVKKTLLEYIKMHEMEDYFGEILVPTEEVIEMRSGQQRKSERKFFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M + +H +K P+V+GF+G T + P+P+T+ E I+N++E V +P
Sbjct: 77 YVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITNKEANAILNRLEEGVDKPKPKTL 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 137 FEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189
>gi|238020173|ref|ZP_04600599.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147]
gi|237868567|gb|EEP69571.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147]
Length = 179
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK +++ R++R G+++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKQWYVVQAYSGFEKNVQKALKERIAREGVENYFGQILVPVEEVVDIKNGRKTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEA--AVQRP 117
FPGYVL++ MTD +H +K TP+V GF+ GT P P++ E+ IM Q ++P
Sbjct: 61 FPGYVLVEMEMTDASWHLVKSTPRVNGFIGGTANRPLPISQREVNSIMEQFGGMQGEKKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG++V ++DGPFA F G V VD E+S++ V V +FGR TPVEL + QVEKI
Sbjct: 121 KPKTEFEVGQQVRINDGPFADFTGDVNTVDYERSKLRVSVQVFGRETPVELDFGQVEKI 179
>gi|261401760|ref|ZP_05987885.1| transcription termination/antitermination factor NusG [Neisseria
lactamica ATCC 23970]
gi|269208098|gb|EEZ74553.1| transcription termination/antitermination factor NusG [Neisseria
lactamica ATCC 23970]
Length = 178
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 118/177 (66%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD ++ +K TP+V GF+G T P P++ E E I+ QV+ ++P
Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGSEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|157960002|ref|YP_001500036.1| NusG antitermination factor [Shewanella pealeana ATCC 700345]
gi|157845002|gb|ABV85501.1| NusG antitermination factor [Shewanella pealeana ATCC 700345]
Length = 183
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +++ + +++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVIQAFSGYEGRVCKTLLEHIRMHEMENYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++D E + I+ +++ + P V
Sbjct: 70 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 130 FEPGEVVRVNDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182
>gi|325982737|ref|YP_004295139.1| NusG antitermination factor [Nitrosomonas sp. AL212]
gi|325532256|gb|ADZ26977.1| NusG antitermination factor [Nitrosomonas sp. AL212]
Length = 177
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS EK ++ R+ R+G+ +I +P E V+ ++ G+K SER+F
Sbjct: 1 MSMKWYVVHAYSGYEKSVQRALRDRIDRAGMQDKFGQILVPVEEVIEMKSGQKNISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D +H +K+ KV GF+G + P+P++ E+++I++Q++ V++P
Sbjct: 61 FPGYVLVEMEMSDDTWHLVKNIDKVTGFVGGSAMKPTPISQKEVDNILHQIQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE + V DGPF F+G V++V+ +KS++ V V IFGR TPVEL +NQVEK
Sbjct: 121 KILFEIGEAIRVKDGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFNQVEK 176
>gi|71066447|ref|YP_265174.1| transcription antitermination protein nusG [Psychrobacter arcticus
273-4]
gi|71039432|gb|AAZ19740.1| transcription antitermination protein nusG [Psychrobacter arcticus
273-4]
Length = 176
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ +S EK+ S+ R++RS ++ +P+E VV ++ G+K SER+FFPG
Sbjct: 2 RWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ M D +H +KD P+++GF+ GT E P+P+T+ E + I+N++ P
Sbjct: 62 YVLIQMEMNDNTWHIVKDCPRIMGFIGGTPETPAPITEVEADRILNRLNQTETDPRPKTL 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + V DGPF F G+V+ VD EKS++H+ V +F R T VEL +++VEK+
Sbjct: 122 FEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175
>gi|261378971|ref|ZP_05983544.1| transcription termination/antitermination factor NusG [Neisseria
cinerea ATCC 14685]
gi|269144586|gb|EEZ71004.1| transcription termination/antitermination factor NusG [Neisseria
cinerea ATCC 14685]
Length = 178
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MAKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD ++ +K TP+V GF+G T P P++ E E I+ QV+ ++P
Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KIEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|91790280|ref|YP_551232.1| transcription antitermination protein nusG [Polaromonas sp. JS666]
gi|91699505|gb|ABE46334.1| transcription antitermination protein nusG [Polaromonas sp. JS666]
Length = 199
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EK +I R++R+G+ +P+E VV ++ G+K +ERRFFPG
Sbjct: 26 QWYVVHAYSGMEKAVERNILERINRAGMQAKFGRFLVPTEEVVEIKNGQKKTTERRFFPG 85
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D+ +H +K T KV GF+G +N P+P+++ +++ I++Q++ ++P V
Sbjct: 86 YVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEDVQKIVSQMQVGTEKPRHKVE 145
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG V+ V+ +K++V V V IFGR TPVEL ++Q+EK
Sbjct: 146 FETGEYVRVKDGPFTDFNGTVEEVNYDKNKVRVSVTIFGRATPVELEFSQIEK 198
>gi|21230352|ref|NP_636269.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66769654|ref|YP_244416.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. campestris str. 8004]
gi|188992866|ref|YP_001904876.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. campestris str. B100]
gi|18496618|gb|AAL74155.1|AF426391_2 NusG protein [Xanthomonas campestris pv. campestris]
gi|21111906|gb|AAM40193.1| transcription antitermination factor [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574986|gb|AAY50396.1| transcription antitermination factor [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734626|emb|CAP52836.1| transcription antitermination factor [Xanthomonas campestris pv.
campestris]
Length = 185
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARTEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIKAVMTDKV---------YHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ D+ +H +K+TPKV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHDEAGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|167626051|ref|YP_001676345.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4]
gi|167356073|gb|ABZ78686.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4]
Length = 183
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +++ + ++ E+ +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVIQAFSGYEGRVCKTLLEHIRMHEMEAYFGEVLVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++D E + I+ +++ + P V
Sbjct: 70 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 130 FEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182
>gi|320108601|ref|YP_004184191.1| NusG antitermination factor [Terriglobus saanensis SP1PR4]
gi|319927122|gb|ADV84197.1| NusG antitermination factor [Terriglobus saanensis SP1PR4]
Length = 209
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 118/174 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R+ GL H + + IP+E V VR G+K ER F PG
Sbjct: 35 KWYIIHAYSGFERKVKESLESRIQAYGLQHKIGRVMIPTEPVTEVRNGKKYVIERVFLPG 94
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + + ++HTIK+TP+V GFLGTG++P +++ E+ I+ + + + +P V F
Sbjct: 95 YVLVEMDLDNDLWHTIKNTPRVTGFLGTGDSPVALSEQEVSSIIFRTDVSKDKPKLKVKF 154
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V ++DGPFA+FNG V +V+E+K + V V IFGR TPVE+ +++V+KIV
Sbjct: 155 EKGEMVKITDGPFANFNGAVDDVNEDKQTLKVMVSIFGRSTPVEIEFSKVDKIV 208
>gi|77918303|ref|YP_356118.1| transcription termination/antitermination factor NusG [Pelobacter
carbinolicus DSM 2380]
gi|77544386|gb|ABA87948.1| transcription antitermination protein nusG [Pelobacter carbinolicus
DSM 2380]
Length = 177
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K ++ R+ + G + L E+ IPSE VV ++ G + S R+F
Sbjct: 1 MSKKWYGVHTYSGFENKVKMTLEERIRQLGFEELFGEVLIPSETVVEMKNGERKTSTRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ + ++ +H +K+TPKV GF+G G P P++D E+ I ++E V+RP
Sbjct: 61 FPGYILVQMELNNETWHVVKNTPKVTGFVGGGSAPPPISDEEVAKITARMEEDVERPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGRVTPVEL + QVEK
Sbjct: 121 VAFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLKVMVSIFGRVTPVELEFIQVEK 175
>gi|260222522|emb|CBA32169.1| Transcription antitermination protein nusG [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 188
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R+ R+G+ I +P E VV V+ G+K +ER+FFPG
Sbjct: 15 RWYVVHAYSGMEKAVERNILERIQRAGMQSKFGRILVPMEEVVEVKNGQKKTTERKFFPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H +K T KV GF+G +N P+P++++E+ I+NQ++ +P +
Sbjct: 75 YVLVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEAEVMKIVNQMQEGTDKPRHKIE 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK
Sbjct: 135 FVVGEFVRVKEGPFTDFNGSVEDVNYEKSKVRVSVTIFGRSTPVELEFSQIEK 187
>gi|119478595|ref|ZP_01618517.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2143]
gi|119448430|gb|EAW29680.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2143]
Length = 176
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EKK + R+ + ++ +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGYEKKVANMLKERIELHKMQEKFGDVLVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+ G + P+P+T++E I+ +VE+ + P
Sbjct: 61 FPGYVLVEMELGDDTWHLVKETPRVLGFIGGKADKPAPITEAEANTILQRVESG-EAPKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKS++HV V+IFGR TPVEL + QVEK
Sbjct: 120 KTLFEPGEMVRVVDGPFNDFNGVVEEVNYEKSKLHVAVLIFGRSTPVELDFGQVEK 175
>gi|93007006|ref|YP_581443.1| NusG antitermination factor [Psychrobacter cryohalolentis K5]
gi|92394684|gb|ABE75959.1| transcription antitermination protein nusG [Psychrobacter
cryohalolentis K5]
Length = 176
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ +S EK+ S+ R++RS ++ +P+E VV ++ G+K SER+FFPG
Sbjct: 2 RWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ M D +H +KD P+++GF+ GT E P+P+T+ E + I+N++ P
Sbjct: 62 YVLIQMDMNDNTWHIVKDCPRIMGFVGGTPETPAPITEVEADRILNRLNQTETDPRPKTL 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + V DGPF F G+V+ VD EKS++H+ V +F R T VEL +++VEK+
Sbjct: 122 FEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175
>gi|124268640|ref|YP_001022644.1| transcription antitermination protein NusG [Methylibium
petroleiphilum PM1]
gi|124261415|gb|ABM96409.1| transcription antitermination protein nusG [Methylibium
petroleiphilum PM1]
Length = 192
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 19 RWYVVHAYSGMEKAVERNLRERIDRAGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFPG 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K T KV GF+G +N P+P++++E+ I++Q++ +++P V
Sbjct: 79 YVLVEMLMDDESWHLVKHTSKVTGFVGGAKNRPAPISEAEVMKIVHQMQEGIEKPRPKVE 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V +GPF FNG ++ V+ +KS+V V V IFGR TPVEL +++VEK+
Sbjct: 139 WEVGELVRVKEGPFTDFNGAIEEVNYDKSKVRVSVTIFGRSTPVELDFHEVEKV 192
>gi|241765523|ref|ZP_04763485.1| NusG antitermination factor [Acidovorax delafieldii 2AN]
gi|241364680|gb|EER59705.1| NusG antitermination factor [Acidovorax delafieldii 2AN]
Length = 197
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RSG+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 24 RWYIVHAYSGMEKAVERNILERIARSGMQTKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E++ I++Q++ +P V
Sbjct: 84 YVFVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQEGTDKPRHKVE 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196
>gi|91791527|ref|YP_561178.1| transcription termination/antitermination factor NusG [Shewanella
denitrificans OS217]
gi|91713529|gb|ABE53455.1| transcription antitermination protein nusG [Shewanella
denitrificans OS217]
Length = 183
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +++ + ++ EI +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVIQAFSGYEGRVSKTLLEHIKMHNMEDYFGEILVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++D E + I+ +++ V+ P +
Sbjct: 70 YVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRII 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++QVEK
Sbjct: 130 YEPGEVVRVCDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFHQVEK 182
>gi|294341871|emb|CAZ90300.1| Transcription antitermination protein nusG [Thiomonas sp. 3As]
Length = 189
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EK ++ R+ R+G+ I +P+E VV ++ G K +ERRFFPG
Sbjct: 16 QWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K T KV GF+G +N P P++++++ IM+Q++ +P V
Sbjct: 76 YVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKVQ 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V + +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++
Sbjct: 136 FEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 189
>gi|296137526|ref|YP_003644768.1| NusG antitermination factor [Thiomonas intermedia K12]
gi|295797648|gb|ADG32438.1| NusG antitermination factor [Thiomonas intermedia K12]
Length = 187
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EK ++ R+ R+G+ I +P+E VV ++ G K +ERRFFPG
Sbjct: 14 QWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFPG 73
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K T KV GF+G +N P P++++++ IM+Q++ +P V
Sbjct: 74 YVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKVQ 133
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V + +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++
Sbjct: 134 FEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 187
>gi|319760678|ref|YP_004124616.1| Transcription antitermination protein nusG [Candidatus Blochmannia
vafer str. BVAF]
gi|318039392|gb|ADV33942.1| Transcription antitermination protein nusG [Candidatus Blochmannia
vafer str. BVAF]
Length = 180
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + V S+ + + + +I +P+E VV +R G++ SER+FFPG
Sbjct: 7 RWYVVQAFSGFENRVVHSLNEYIKLKNMGSMFGDIMVPTEEVVEMRAGQRRKSERKFFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ PKV+GF+G T + P+P+ D EI++I+ +++ +P
Sbjct: 67 YVLVQMVMNDASWHLVRSIPKVMGFVGGTCDKPAPIGDKEIDNIIYRLQQIGDKPRPKTL 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L ++QVEK
Sbjct: 127 FEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVDLDFSQVEK 179
>gi|328953170|ref|YP_004370504.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
gi|328453494|gb|AEB09323.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
Length = 176
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EKK +++ R G+ L+T++ +P+E+V + KG++ S R+F
Sbjct: 1 MAQKWYVVHTYSGFEKKVKDALEERARSRGMQDLITQVLVPTEQVEEMIKGQRRISHRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYVL++ + D +H ++DTPKV GF+G P+ + D+E E ++NQ++ +P
Sbjct: 61 YPGYVLVRMELNDDTWHLVQDTPKVTGFIGGRMEPAVIPDAEAEKVINQIKEGALKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+G++V V DGPF +FNG+V V EK RV V + +FGR TPVEL ++QVEK
Sbjct: 121 IKFELGDKVRVIDGPFTNFNGVVDEVKGEKGRVRVMISVFGRPTPVELEFSQVEK 175
>gi|56459451|ref|YP_154732.1| transcription antiterminator NusG [Idiomarina loihiensis L2TR]
gi|56178461|gb|AAV81183.1| Transcription antiterminator NusG [Idiomarina loihiensis L2TR]
Length = 179
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + ES+ + G++ EI +P E VV +R G + SER+FFPG
Sbjct: 6 RWYVVQAFSGYEARVSESLKEHIKMHGMEDKFGEILVPKEEVVEMRGGVRRKSERKFFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M + +H IK P+V+GF+G + + P+P++ E + I+++++ + +P
Sbjct: 66 YVLVEMDMDEDAWHLIKSVPRVLGFIGGSSDRPTPISKKEADAILDRLQDSADKPKPKTL 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSRV V V IFGR TPVEL + Q+EK
Sbjct: 126 FEPGEVVRVNDGPFADFNGTVEEVDYEKSRVTVSVSIFGRATPVELEFGQIEK 178
>gi|297537519|ref|YP_003673288.1| NusG antitermination factor [Methylotenera sp. 301]
gi|297256866|gb|ADI28711.1| NusG antitermination factor [Methylotenera sp. 301]
Length = 178
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY VQ +S EK + + R+ R+GL +I +P E V+ ++ G+K SER+
Sbjct: 1 MSMKWYAVQAFSGFEKSVQKGLEERIVRTGLQEQFGQILVPIEEVIEMKAGQKTISERKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD+ +H +K TP+V F+G + + P+P+ D E++ I+ +++ + P
Sbjct: 61 YPGYVLVQMAMTDESWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V + DGPF F+G V++V+ EKS++HV VVIFGR TPVEL ++Q+EK
Sbjct: 121 KLTFEKGESVRIVDGPFKDFSGNVEDVNYEKSKLHVSVVIFGRSTPVELEFSQIEK 176
>gi|255019485|ref|ZP_05291581.1| Transcription antitermination protein NusG [Acidithiobacillus
caldus ATCC 51756]
gi|254971080|gb|EET28546.1| Transcription antitermination protein NusG [Acidithiobacillus
caldus ATCC 51756]
Length = 175
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V +S+ EKK I R R GL+ EI +P E VV +R G+K +S+R F+PG
Sbjct: 2 RWYVVHAFSSFEKKVQAEIRERAKREGLEDQFGEILVPVEEVVEMRNGQKTSSQRMFYPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K TP+V GF+G P P++++E I+++++ V++P
Sbjct: 62 YVLVQMEMNDQTWHLVKHTPRVTGFVGGSVGKPHPLSEAEANAILDRIKEGVEKPRPKFS 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ GE+V V DGPF FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEKI
Sbjct: 122 FDAGEQVRVIDGPFKDFNGVVEEVNYEKSKLRVSVTIFGRSTPVELDFGQVEKI 175
>gi|109896921|ref|YP_660176.1| NusG antitermination factor [Pseudoalteromonas atlantica T6c]
gi|109699202|gb|ABG39122.1| transcription antitermination protein nusG [Pseudoalteromonas
atlantica T6c]
Length = 190
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQ +S E + +++ + ++ EI +P+E V+ +R G++ SER+FFPG
Sbjct: 17 KWYVVQAFSQYEGRVKKTLLEYIKMHEMEDSFGEILVPTEEVIEMRSGQQRKSERKFFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M + +H +K P+V+GF+G T + P+P+T E I+N++E V +P
Sbjct: 77 YVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITTKEANAILNRLEEGVDKPKPKTL 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 137 FEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189
>gi|325267345|ref|ZP_08134006.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Kingella denitrificans ATCC 33394]
gi|324981140|gb|EGC16791.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Kingella denitrificans ATCC 33394]
Length = 183
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 122/181 (67%), Gaps = 6/181 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GR+ SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEEYFGQILVPVEEVVDIKNGRRTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQV-----EAAV 114
FPGYVL++ M D +H +K PKV GF+ GT P P+T E++ +M QV + +
Sbjct: 61 FPGYVLVEMEMMDSSWHLVKSIPKVNGFVGGTVHRPLPITQKEVDAMMAQVGGSSQDGVM 120
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
++P V F++G++V +++GPFA FNG+V++V+ EK+++ V V IFGR TPVEL + QVE
Sbjct: 121 KKPKPRVEFDIGQQVRINEGPFADFNGVVEHVEYEKNKLRVMVQIFGRETPVELEFGQVE 180
Query: 175 K 175
K
Sbjct: 181 K 181
>gi|198282625|ref|YP_002218946.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666542|ref|YP_002424817.1| transcription termination/antitermination factor NusG
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247146|gb|ACH82739.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518755|gb|ACK79341.1| transcription termination/antitermination factor NusG
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 177
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V +S EKK I R +R GL EI +P E VV +R G+K +S+R F
Sbjct: 1 MSMRWYVVHAFSGFEKKVQGEIRERANREGLADKFGEILVPVEEVVEMRNGQKTSSQRMF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K TP+V GF+G P P++D+E IM++++ V++P
Sbjct: 61 YPGYVLVQMEMDDVTWHLVKSTPRVTGFVGGSVGRPHPLSDAETNAIMDRIKEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE+V V DGPF FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KFSFDAGEQVRVVDGPFKDFNGVVEEVNFEKSKLRVSVTIFGRSTPVELDFGQVEK 176
>gi|319761181|ref|YP_004125118.1| transcription termination/antitermination factor nusg
[Alicycliphilus denitrificans BC]
gi|330823041|ref|YP_004386344.1| NusG antitermination factor [Alicycliphilus denitrificans K601]
gi|317115742|gb|ADU98230.1| transcription termination/antitermination factor NusG
[Alicycliphilus denitrificans BC]
gi|329308413|gb|AEB82828.1| NusG antitermination factor [Alicycliphilus denitrificans K601]
Length = 196
Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R+ RSG+ H I +P+E VV ++ G++ +ERR FPG
Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIVRSGMQHKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E++ I++Q++ +P +
Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFGQVEK 195
>gi|30249991|ref|NP_842061.1| transcription antitermination protein NusG [Nitrosomonas europaea
ATCC 19718]
gi|30139098|emb|CAD85962.1| nusG; Bacterial transcription antitermination [Nitrosomonas
europaea ATCC 19718]
Length = 177
Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS EK ++ R+++ L+ EI IP E V+ ++ G+K SER+F
Sbjct: 1 MSKKWYAVHTYSGFEKSVKRALKDRIAQHKLEDKFGEILIPVEEVIEIKGGQKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+LI+ MTD+ +H +K TPKV GF+G T P P++ EIE I NQV V++P
Sbjct: 61 FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSTQPVPISHKEIESIFNQVREGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE GE V + +GPF F+G V+ V+ +KS++ V V IFGR TPVEL ++QV+K+
Sbjct: 121 KVIFEAGEAVRIKEGPFTDFHGNVEEVNYDKSKLQVSVSIFGRPTPVELDFHQVDKV 177
>gi|332108098|gb|EGJ09322.1| transcription antitermination protein NusG [Rubrivivax
benzoatilyticus JA2]
Length = 193
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 20 RWYVVHAYSGMEKAVERNLRERIDRAGMQDKFGRILVPTEEVVELKNGKKAVTERRFFPG 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K T KV GF+G N P+P++++E+ I+NQ++ V +P V
Sbjct: 80 YVLVEMEMADDTWHLVKHTSKVTGFVGGARNRPAPISEAEVMKIVNQMQEGVDKPRPKVE 139
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VGE V V +GPF FNG V+ V+ EKS+V V V IFGR T VEL ++QVEK+
Sbjct: 140 WTVGEMVRVKEGPFTDFNGAVEEVNYEKSKVKVSVTIFGRATGVELDFSQVEKV 193
>gi|294675843|ref|YP_003576458.1| transcription antitermination protein NusG [Rhodobacter capsulatus
SB 1003]
gi|294474663|gb|ADE84051.1| transcription antitermination protein NusG [Rhodobacter capsulatus
SB 1003]
Length = 179
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL + E+ +P+E V+ +R+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIKQAVIDKGLGDEIEEVLVPTEEVIEIRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPV 118
PGYVL++ MTD+ YH I +V GFLG P+P+ DSE+ I+N+ V P
Sbjct: 61 MPGYVLVRMDMTDRGYHAITSINRVTGFLGPQGKPTPMRDSEVNTILNRQGPTGEVVAPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + FE+GE V V+DGPF F+G+V+ VD+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 NLIRFEIGENVSVTDGPFEGFSGMVEEVDDAAGRLKVTVSIFGRPTPVELEFTQVSK 177
>gi|114799751|ref|YP_760699.1| transcription termination/antitermination factor NusG [Hyphomonas
neptunium ATCC 15444]
gi|114739925|gb|ABI78050.1| transcription termination/antitermination factor NusG [Hyphomonas
neptunium ATCC 15444]
Length = 180
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 119/176 (67%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV YSN EKK +I + R GL HL+ EI +P+E VV V +G+K E+RFFPG
Sbjct: 5 KWYIVHAYSNFEKKVAATIREQAERKGLLHLIEEIEVPTEEVVEVARGKKKTVEKRFFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQ-VEAAVQRPVSS 120
YVL+KA +TD +YH +KDTPKV GFLG G+ P PV E++ I+ + V+ +RP
Sbjct: 65 YVLMKAQLTDDIYHLVKDTPKVSGFLGAEGGKKPLPVRQREVDRILGKSVDPTAERPRPK 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V V+DGPF F G V+ +DE R+ V V IFGR TPV+L ++QV KI
Sbjct: 125 VSFEIGEQVQVNDGPFQGFEGAVEEIDEANGRLKVTVSIFGRGTPVDLEFDQVVKI 180
>gi|297182720|gb|ADI18876.1| transcription antiterminator [uncultured Pseudomonadales bacterium
HF0010_05E14]
Length = 177
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS E K +I R+ L EI +P+E VV ++ G+K SER+F
Sbjct: 1 MSKQWYVVHAYSGYENKVATAIEERIKLHNLQDKFGEIMVPTEEVVEMKGGQKRTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ + D+ +H +KDTP+V+GF+G E PSP+++ E + I+ +V+ + + P
Sbjct: 61 FPGYVLVNMELDDESWHLVKDTPRVMGFIGGKREKPSPISEKEADIILRRVQDSGETPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF FNG V+ V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KTMFEAGEMVRVTDGPFNDFNGTVEEVNYEKSKLRVAVSIFGRSTPVELDFTQVEK 176
>gi|226198300|ref|ZP_03793871.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei Pakistan 9]
gi|225929820|gb|EEH25836.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei Pakistan 9]
Length = 164
Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPGYVL++ MTD
Sbjct: 1 MEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTD 60
Query: 74 KVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
+ +H +K+T KV GF+G N PSP++ E+E IM+Q++ V++P FEVGE V V
Sbjct: 61 ETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVK 120
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 121 EGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 164
>gi|94266155|ref|ZP_01289867.1| transcription antitermination protein NusG:KOW [delta
proteobacterium MLMS-1]
gi|93453270|gb|EAT03719.1| transcription antitermination protein NusG:KOW [delta
proteobacterium MLMS-1]
Length = 176
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYI+ YS E++ ++ R+ + + + EI +P+E+VV + KG K S R+F
Sbjct: 1 MARRWYILHTYSGFEEQVKTALLERIKNAAQEEMFGEILVPTEQVVEMVKGAKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D+ +HT++DTPKV GF+G NP P+ D+E + I+ +++ +P
Sbjct: 61 FPGYILVNVELNDQTWHTVRDTPKVTGFVGNDLNPEPLDDAEAKKIIGRIQDGALKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G++V V DGPFASF G+V V +K RV V V IFGR TPVEL Y QV K
Sbjct: 121 VSFEEGDQVRVVDGPFASFQGVVDEVYPDKGRVRVRVSIFGRETPVELEYIQVSK 175
>gi|298531097|ref|ZP_07018498.1| NusG antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509120|gb|EFI33025.1| NusG antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
Length = 197
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFF 61
PRWYI+ YS E++ VE + R+G D L+ EI +P+E+VV + KG+K S R+FF
Sbjct: 24 PRWYIIHTYSGYEQR-VERTIKEMMRTGQDKGLIEEIVVPTEQVVELVKGQKKTSTRKFF 82
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K V D+ +H I+ PKV GF+G+ PSP+TD+E + I++ V++ ++P
Sbjct: 83 PGYVLVKMVFNDESWHLIQSIPKVTGFIGSKNKPSPITDAEADKILSTVQSRKEQPRPKF 142
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+ + V DGPFA+FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 143 HFARGDEIRVVDGPFANFNGVVEDVNYDKGKLKVSVSIFGRQTPVELDFVQVSK 196
>gi|90407970|ref|ZP_01216143.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3]
gi|90310908|gb|EAS39020.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3]
Length = 182
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +++ + + ++ EI +P+E VV +R G+K SER+FFPG
Sbjct: 9 RWYVVQAFSGYEGRVQKTLIEHIKLNEMEEYFGEILVPTEEVVEMRAGQKRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+T +V+GF+G T E P+P++ E+E+I+N+++ +V P
Sbjct: 69 YVLVQMAMNDASWHLVKNTDRVMGFIGGTKERPAPISPKEVENILNRLQESVDSPRPRTL 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ F+G V+ VD +KSR+ V V IFGR TPV+L ++QVEK
Sbjct: 129 FEAGQIVRVVDGPFSDFSGTVEEVDYDKSRLKVSVSIFGRATPVDLEFSQVEK 181
>gi|118579107|ref|YP_900357.1| NusG antitermination factor [Pelobacter propionicus DSM 2379]
gi|118501817|gb|ABK98299.1| transcription antitermination protein nusG [Pelobacter propionicus
DSM 2379]
Length = 175
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K ++ R+ G++ EI IPSE VV ++KG K S R+F
Sbjct: 1 MSKKWYGVHTYSGFENKVRLNLHERIKNEGMEEHFEEILIPSETVVELKKGEKRTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K + D+ +H +K+T KV GF+G G P P+ D E+ I ++E ++P
Sbjct: 61 FPGYILVKMELNDETWHIVKETAKVTGFVG-GNTPFPIADEEVNKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F+GIV++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGIVEDVKPDKGKLRVTVTIFGRATPVELEFMQVEK 174
>gi|108758111|ref|YP_631275.1| transcription termination/antitermination factor NusG [Myxococcus
xanthus DK 1622]
gi|108461991|gb|ABF87176.1| transcription termination/antitermination factor NusG [Myxococcus
xanthus DK 1622]
Length = 180
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YSN E +A +S+ ++ GL EI IP E+VV + KG K S R+F
Sbjct: 1 MAMKWYVVHTYSNFENQAKKSLEEKVRLEGLQDQFGEILIPMEQVVEMVKGEKKTSRRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+ ++ + D+ H +K+TPK+ GF GT +NP P++D E+ + +Q+ +P
Sbjct: 61 FPGYIFVQMELNDRTLHLVKNTPKITGFPGTVQNQNPLPISDQEVARLTSQISEGTLKPK 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F+ G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK
Sbjct: 121 PKVQFDDGDTVRVIDGPFANFNGTVEEVNAEKGRVKVLVSIFGRATPVELDFMQVEK 177
>gi|253998002|ref|YP_003050065.1| NusG antitermination factor [Methylovorus sp. SIP3-4]
gi|313200070|ref|YP_004038728.1| nusg antitermination factor [Methylovorus sp. MP688]
gi|253984681|gb|ACT49538.1| NusG antitermination factor [Methylovorus sp. SIP3-4]
gi|312439386|gb|ADQ83492.1| NusG antitermination factor [Methylovorus sp. MP688]
Length = 178
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 1/178 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY VQ +S EK + R++RS L + +I +P E V+ ++ G+K SER+
Sbjct: 1 MSMRWYAVQAFSGFEKSVQRGLEERIARSDLQDMFGQILVPVEEVIEMKNGQKAISERKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K TP+V F+G T P+P+ D E+E I+ +++ + P
Sbjct: 61 YPGYVLVQMQMNDDTWHLVKSTPRVTAFIGGTALKPTPIKDKEVEIILQRMDESKSNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V V DGPF F+G V++++ EKS++ V VVIFGR TPVEL ++QVEK V
Sbjct: 121 KLTFEKGESVRVIDGPFKDFSGNVEDINYEKSKLRVSVVIFGRATPVELDFDQVEKEV 178
>gi|27904552|ref|NP_777678.1| transcription antitermination protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|31340244|sp|Q89B15|NUSG_BUCBP RecName: Full=Transcription antitermination protein nusG
gi|27903949|gb|AAO26783.1| transcription antitermination protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 181
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + +SI + ++ L E+ +PSE V+ ++ G++ SE +FFPG
Sbjct: 8 RWYVLQAFSGFEGRIAQSIREHVKLKKMEKLFGEVMVPSEEVIEIKAGQRKKSEYKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ +M + +H ++ P+V+GF+G T + P P+TD E+ I+N+++ +P
Sbjct: 68 YVLIQMIMNESSWHLVRSIPRVLGFIGGTPDRPLPITDQEVNTIINKLKQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF+ FNGIV+ VD EK+R+ V V IFGR TPVEL ++QV+K
Sbjct: 128 FEPGETVRVNDGPFSDFNGIVEEVDYEKNRLKVSVSIFGRSTPVELDFSQVKK 180
>gi|330432328|gb|AEC17387.1| transcription antitermination protein NusG [Gallibacterium anatis
UMN179]
Length = 183
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + + + ++ L E+ +P+E VV G++ SER+FFPG
Sbjct: 9 RWYVLQAFSGFESRVATVLREYIKLHNMEELFGEVLVPTEEVVENVGGKRRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+G T ++P+P+++ E E I+N++E + +P
Sbjct: 69 YVLVQMVMNDDTWHLVRSVPRVMGFIGGTPDHPAPISNREAEMILNRLEQSSDKPRPKTM 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ GE V V +GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 129 FQPGEEVRVKEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKL 182
>gi|146329117|ref|YP_001210163.1| transcription termination-antitermination factor NusG
[Dichelobacter nodosus VCS1703A]
gi|146232587|gb|ABQ13565.1| transcription termination-antitermination factor NusG
[Dichelobacter nodosus VCS1703A]
Length = 178
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++Q YS E+ ++ R+ R GL EI IP+E VV ++ +K S+ +F
Sbjct: 1 MAKQWYVLQSYSQFEQYVKRALQERIEREGLQDSFGEILIPTEEVVEIKDNKKRISQHKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYV ++ M D +H + PKV GF+G T E+P+ ++ E++ I+N+++ V++P
Sbjct: 61 YPGYVFVEMEMNDTTWHVVNSIPKVSGFVGGTKESPAAISQEEVDKILNRMQEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE+GE + + DGPFA F G V+ V+ EKSR+ V V+IFGR TPVEL +NQVEK
Sbjct: 121 KTLFEIGEELRIIDGPFADFTGTVEEVNYEKSRLKVSVLIFGRPTPVELEFNQVEK 176
>gi|297180665|gb|ADI16874.1| transcription antiterminator [uncultured gamma proteobacterium
HF0010_16J05]
Length = 177
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+V YS EK ++ R+ S L EI +P+E VV +R G+K SER+F
Sbjct: 1 MSKNWYVVHAYSGFEKNVARALQERVDLSEHKDLFGEILVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+ G + P+P++ E I+++V A ++
Sbjct: 61 FPGYVLVEMELNDDTWHLVKETPRVMGFIGGKADQPAPLSPREAASILDRVAAGSEKATP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLQVAVTIFGRSTPVELDFGQVEK 176
>gi|285017308|ref|YP_003375019.1| transcription antitermination protein nusg [Xanthomonas albilineans
GPE PC73]
gi|283472526|emb|CBA15031.1| probable transcription antitermination protein nusg [Xanthomonas
albilineans]
Length = 185
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ R + ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIVRDEMQERFGDVLVPTEEVIEMRSGQKRRSERKFFPG 62
Query: 64 YVLIKAVMTDK---------VYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ D+ +H +K+TPKV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHDEGGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDQEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|297183429|gb|ADI19562.1| transcription antiterminator [uncultured gamma proteobacterium
HF0770_27E13]
Length = 177
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QVYSN EKK + + R + GL +I +P+E +V ++ G+K SER++
Sbjct: 1 MEYQWYVLQVYSNYEKKVLTMLEDRSKQLGLSEQFADIVVPTEEIVEMKGGQKKTSERKY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ + D+ +H + P V+GF+ GT E P+P++D E+ I+N+ E A P
Sbjct: 61 FPGYVLVNMNLNDETWHFVNSIPNVMGFIGGTSEKPAPISDREVMIILNKAEDAANAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V +GPF FNG+V+ V+ EKS++ V V I GR TPVEL +NQVEK
Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKSKLFVAVQILGRATPVELNFNQVEK 176
>gi|329907539|ref|ZP_08274680.1| Transcription antitermination protein NusG [Oxalobacteraceae
bacterium IMCC9480]
gi|327546946|gb|EGF31851.1| Transcription antitermination protein NusG [Oxalobacteraceae
bacterium IMCC9480]
Length = 164
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EK ++ R++R+G+D +I +P+E V+ V+ G+K +ERRFFPGYVL++ MTD
Sbjct: 1 MEKSVQRALTERVTRAGMDEKFGQILVPTEEVIEVKNGQKTVTERRFFPGYVLVEMEMTD 60
Query: 74 KVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
+ +H +K+T KV GF+G N P+P+ +E++ IM Q++ +++P V +EVGE V +
Sbjct: 61 ETWHLVKNTSKVTGFIGGKSNKPTPIPPNEVDKIMQQMQEGIEKPRPKVLYEVGELVRIK 120
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 121 DGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEK 163
>gi|134283248|ref|ZP_01769949.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 305]
gi|134245443|gb|EBA45536.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 305]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ R+G+ +I +P+E VV V+ G K +ERRFFPGYVL++ MTD+ +H +K+T K
Sbjct: 8 RIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTDETWHLVKNTAK 67
Query: 85 VIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V GF+G N PSP++ E+E IM+Q++ V++P FEVGE V V +GPF FNG V
Sbjct: 68 VTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVKEGPFTDFNGTV 127
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 128 EEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 160
>gi|294142945|ref|YP_003558923.1| transcription antitermination protein NusG [Shewanella violacea
DSS12]
gi|293329414|dbj|BAJ04145.1| transcription antitermination protein NusG [Shewanella violacea
DSS12]
Length = 185
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVLKTLNEYIQMYKMEHYFGEILVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+ GT + P+P+++ E + I+ +++ + P V
Sbjct: 70 YVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISNVEADRILQRLQENTESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
FE GE V V+DGPFA F G V+ VD EK+RV V V+IFGR TP+E+ ++Q+
Sbjct: 130 FEPGEVVSVADGPFADFRGAVEQVDYEKNRVKVSVMIFGRSTPLEVDFSQI 180
>gi|253995706|ref|YP_003047770.1| NusG antitermination factor [Methylotenera mobilis JLW8]
gi|253982385|gb|ACT47243.1| NusG antitermination factor [Methylotenera mobilis JLW8]
Length = 178
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 117/178 (65%), Gaps = 1/178 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY VQ +S EK + + R+ RSGL +I +P E V+ ++ G+K SER+
Sbjct: 1 MSMKWYAVQAFSGFEKSVQKGLEERVVRSGLQDQFGQILVPIEEVIEMKAGQKTISERKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V F+G + + P+P+ D E++ I+ +++ + P
Sbjct: 61 YPGYVLVQMNMTDDTWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V ++DGPF F+G V+ ++ EKS++ V VVIFGR TPVEL ++QVEK V
Sbjct: 121 KLTFEKGESVRITDGPFKDFSGNVEEINYEKSKLRVSVVIFGRSTPVELEFSQVEKEV 178
>gi|222112416|ref|YP_002554680.1| nusg antitermination factor [Acidovorax ebreus TPSY]
gi|221731860|gb|ACM34680.1| NusG antitermination factor [Acidovorax ebreus TPSY]
Length = 196
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E++ I++Q++ +P +
Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195
>gi|119383494|ref|YP_914550.1| NusG antitermination factor [Paracoccus denitrificans PD1222]
gi|119373261|gb|ABL68854.1| transcription antitermination protein nusG [Paracoccus
denitrificans PD1222]
Length = 179
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + G++ + E+ +P+E V+ +R+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEAIRQAVVEKGIEDQIDEVLVPTEEVIEIRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPV 118
PGYVL++ ++DK YH + +V GFLG P P+ D E+ I+++ A P
Sbjct: 61 MPGYVLVRMELSDKTYHLVNSINRVTGFLGAQGKPMPMRDDEVNAILHRTGEGGAEVAPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F+VGE+V V+DGPF F+G+V+ VDE +R+ V V IFGR TPVEL + QV K
Sbjct: 121 NLIRFDVGEKVNVTDGPFEGFSGMVEEVDEAANRIKVTVSIFGRPTPVELEFTQVAK 177
>gi|226942765|ref|YP_002797838.1| transcription termination/antitermination factor NusG [Azotobacter
vinelandii DJ]
gi|226717692|gb|ACO76863.1| transcription termination/antitermination factor NusG [Azotobacter
vinelandii DJ]
Length = 159
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H IKDTP+
Sbjct: 7 RVKLAGMEDQFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHLIKDTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+TD E E I+ +V + RP FE GE V V DGPFA FNG+V
Sbjct: 67 VMGFIGGTADKPAPITDKEAEAILRRVADSGDRPKPKTLFEPGEVVRVIDGPFADFNGVV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 EEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 158
>gi|121596189|ref|YP_988085.1| transcription antitermination protein nusG [Acidovorax sp. JS42]
gi|120608269|gb|ABM44009.1| transcription antitermination protein nusG [Acidovorax sp. JS42]
Length = 196
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E++ I++Q++ +P +
Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195
>gi|327479312|gb|AEA82622.1| transcription antitermination protein NusG [Pseudomonas stutzeri
DSM 4166]
Length = 159
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H +KDTP+
Sbjct: 7 RVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHLVKDTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+TD E E I+ +V +P FE GE V V+DGPFA FNG+V
Sbjct: 67 VMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVADGPFADFNGVV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 127 EEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159
>gi|148653838|ref|YP_001280931.1| NusG antitermination factor [Psychrobacter sp. PRwf-1]
gi|148572922|gb|ABQ94981.1| transcription antitermination protein nusG [Psychrobacter sp.
PRwf-1]
Length = 176
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ +S EK+ + R++RS E+ +P+E VV ++ G+K SER+FFPG
Sbjct: 2 RWYIVQAFSGYEKQVQRYLTDRINRSEFADKFGEVLVPTEEVVEMKDGKKRKSERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + D P++ GF+ GT ENP+P+T E + I+N+++ + + P
Sbjct: 62 YVLVEMEMNDDTWHIVNDCPRITGFIGGTPENPAPITKVEADRILNRLKQSEEAPRPKTL 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+V+ VD EKS++ + V +F R T VEL +++VEK+
Sbjct: 122 FEPGEEVLVIDGPFTDFKGLVEKVDYEKSKLQLTVNVFNRPTQVELEFSKVEKL 175
>gi|153869595|ref|ZP_01999148.1| Transcription termination factor [Beggiatoa sp. PS]
gi|152073936|gb|EDN70849.1| Transcription termination factor [Beggiatoa sp. PS]
Length = 187
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 11/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YSN EK S+ R+ SGL +I +P+E VV +R G S+R+
Sbjct: 1 MALRWYVVHTYSNFEKAVKVSLEERIRHSGLHDKFGQILVPTEEVVEMRDGVTRKSDRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
+PGYVL++ M D+ +H +K+ PKV+GF+G G +P+P++++E E I+ +
Sbjct: 61 YPGYVLVQMEMNDETWHIVKNVPKVMGFIGGGTAERKGKANQFFSPTPLSEAEAEAILQR 120
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V+ ++P FEVGE V V +GPF FNG+V+ V+ EK+R+ V V IFGR TPVEL
Sbjct: 121 VQEGSEKPRPKTLFEVGEVVRVKEGPFTDFNGVVEEVNYEKNRLRVAVRIFGRSTPVELE 180
Query: 170 YNQVEK 175
+ QVEK
Sbjct: 181 FGQVEK 186
>gi|90417547|ref|ZP_01225468.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2207]
gi|90330639|gb|EAS45929.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2207]
Length = 175
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EKK ++ R+ L EI +P+E VV +R G K SER FFPG
Sbjct: 2 RWYVVHAYSGYEKKVSLALQDRIQLHNLQDKFGEILVPTEEVVEMRGGEKRTSERMFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ + D+ +H +K+TP+V+GF+ G + P+P+TD E + I+ +V + + P
Sbjct: 62 YVLVQMELDDESWHLVKETPRVMGFIGGKADKPAPITDKEADLILQRVHDSEEAPRPKTM 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+ GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 122 FEPGELVRVTYGPFNDFNGTVEEVNYEKSRLRVAVSIFGRSTPVELEFTQVEK 174
>gi|319787937|ref|YP_004147412.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1]
gi|317466449|gb|ADV28181.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1]
Length = 185
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 117/182 (64%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ G++ ++ +P+E VV +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIVMHGMEDRFGDVLVPTEEVVEMRSGQKRRSERKFFPG 62
Query: 64 YVLIKAVMTD---------KVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ TD + +H +K+T KV+GF+G T + P P+ D E I+++V+
Sbjct: 63 YVLVQIETTDDNGIPRIDSESWHLVKETSKVMGFIGGTADRPLPIRDEEAAAILDRVQEG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVIDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|297180346|gb|ADI16563.1| transcription antiterminator [uncultured gamma proteobacterium
HF0010_01E20]
Length = 177
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+V YS EK ++ R++ S EI +P+E VV +R G+K SER+F
Sbjct: 1 MSKNWYVVHAYSGFEKNVARALQERVNLSNHQENFGEILVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ +H +K TP+V+GF+ G + P+P++ E I+++V A ++
Sbjct: 61 FPGYVLVEMELNDETWHLVKKTPRVMGFIGGKADQPAPLSTKEAAAILDRVAAGSEKATP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLRVAVTIFGRSTPVELDFGQVEK 176
>gi|308272991|emb|CBX29595.1| Transcription antitermination protein nusG [uncultured
Desulfobacterium sp.]
Length = 176
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 115/176 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WYI+ VYS E K ++ +++ + +P+E+VV + KG++ S R+F
Sbjct: 1 MSLKWYILHVYSGFENKVKTALEEKIAAYNRPDKFGNVLVPTEQVVELVKGKRKTSTRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYVL++ + D+V+H + DT KV GFLG E P+P++D E E I+N++EA +P
Sbjct: 61 YPGYVLVQMDLDDEVWHIVNDTAKVSGFLGGREKPTPISDDEAEQILNRMEAGKLKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+FE G+ + V DGPF +FNG+V+ V+ EK ++ V V IFGR TPVEL + QV KI
Sbjct: 121 YYFETGDEIRVVDGPFTNFNGVVEEVNPEKGKIKVLVSIFGRSTPVELEFVQVTKI 176
>gi|297172924|gb|ADI23885.1| transcription antiterminator [uncultured gamma proteobacterium
HF4000_48J03]
Length = 177
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QVYSN EKK + + R GL +I +P+E +V ++ G+K SER+F
Sbjct: 1 MEYQWYVLQVYSNYEKKVLTMLQDRSKVLGLSEQFADIVVPTEEIVEMKGGQKKTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ + D+ +H + P V+GF+ GT E P+P++D E+ I+N+ E A P
Sbjct: 61 FPGYVLVNMNLNDETWHFVNSIPNVMGFVGGTSEKPAPISDREVMIILNKAEDAANAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V +GPF FNG+V+ V+ EK+++ V V I GR TPVEL +NQVEK
Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKNKLFVAVQILGRATPVELNFNQVEK 176
>gi|289663461|ref|ZP_06485042.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289667608|ref|ZP_06488683.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 185
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 119/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIKAVMTDKV---------YHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ D+ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHDEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|330812087|ref|YP_004356549.1| transcription antitermination protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327380195|gb|AEA71545.1| transcription antitermination protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 159
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H +KDTP+
Sbjct: 7 RVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHLVKDTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+TD E E I+ +V +P FE GE V V+DGPFA FNG V
Sbjct: 67 VMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFADFNGTV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 127 EEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159
>gi|50083574|ref|YP_045084.1| transcription antitermination protein [Acinetobacter sp. ADP1]
gi|49529550|emb|CAG67262.1| transcription antitermination protein [Acinetobacter sp. ADP1]
Length = 177
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVMRSLNERIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK +
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|118594012|ref|ZP_01551359.1| transcription antitermination protein NusG [Methylophilales
bacterium HTCC2181]
gi|118439790|gb|EAV46417.1| transcription antitermination protein NusG [Methylophilales
bacterium HTCC2181]
Length = 178
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY VQ YS EK +S+ R+ ++ L EI +P E VV ++ G K SERR
Sbjct: 1 MSKRWYAVQAYSGYEKIVQKSLLERIDQAKLSDQFGEILVPVEEVVEMKGGNKTLSERRL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H ++ TPKV F+G + + P+P+ D E++ I+ +++ + P
Sbjct: 61 YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSAQKPTPIKDKEVDIILQRMDDSKVNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE V V DGPF F+G V+ ++ EKS++ V VVIFGR TPVEL + Q+EK V
Sbjct: 121 KMTFEVGESVRVLDGPFKDFSGSVEEINYEKSKLRVSVVIFGRATPVELEFGQIEKEV 178
>gi|85858133|ref|YP_460335.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
gi|85721224|gb|ABC76167.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
Length = 176
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 109/173 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ +G+ ++I IP E VV + G K S+R+F
Sbjct: 1 MAFKWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K + D +H +KDTPKV GF+G+ E PSP+ D ++E + +++ +P
Sbjct: 61 FPGYILVKMELDDDTWHLVKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
FEVG+ V + DGPF +F+G++ V EK ++ V V IFGR TPVEL + QV
Sbjct: 121 FKFEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173
>gi|262375153|ref|ZP_06068387.1| transcription termination/antitermination factor NusG
[Acinetobacter lwoffii SH145]
gi|262310166|gb|EEY91295.1| transcription termination/antitermination factor NusG
[Acinetobacter lwoffii SH145]
Length = 177
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK V
Sbjct: 123 FEPGEELLVVDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKSV 177
>gi|297569434|ref|YP_003690778.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2]
gi|296925349|gb|ADH86159.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2]
Length = 176
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 112/176 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYI+ YS E++ ++ R+ +G + + EI +P+E+VV + KG + S R+F
Sbjct: 1 MARRWYILHTYSGFEEQVKTALQERIKNAGQEEMFGEILVPTEQVVEMVKGARKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + ++ +HT++ TPKV GF+G NP P+ D + I+ +++ +P
Sbjct: 61 FPGYILVNVDLNEETWHTVRGTPKVTGFIGNDLNPEPLADEDAMKIIGRIQDGALKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE G++V V DGPFA+F G+V V+ EK RV V V IFGR TPVEL + QV KI
Sbjct: 121 VSFEEGDQVRVVDGPFANFQGVVDEVNPEKGRVRVRVSIFGRETPVELEFIQVSKI 176
>gi|218779773|ref|YP_002431091.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
gi|218761157|gb|ACL03623.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
Length = 176
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 112/176 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V VYS E K ++ R++ S ++ IP+E+VV + KG++ S+R+F
Sbjct: 1 MALKWYVVHVYSGFENKVKTALEERIASSRFSDKFGQVLIPTEQVVELVKGKRKTSQRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D+ +H + DT KV GFLG PSP++D E I++Q+EA +P
Sbjct: 61 YPGYILVQMHLDDETWHLVNDTAKVTGFLGGRNKPSPLSDEEASRIVDQIEAGKLKPQPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPF +FNG V+ V+ EK ++ V V IFGR TPVEL + QV K+
Sbjct: 121 YLFETGDEVRVIDGPFTNFNGSVEAVNPEKGKIKVMVSIFGRATPVELDFVQVTKL 176
>gi|189424398|ref|YP_001951575.1| NusG antitermination factor [Geobacter lovleyi SZ]
gi|189420657|gb|ACD95055.1| NusG antitermination factor [Geobacter lovleyi SZ]
Length = 175
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K ++ R+ ++ L EI IPSE VV ++KG K S R+F
Sbjct: 1 MSQKWYGVHTYSGYENKVRLNLTERVKNEKMEDLFGEILIPSETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+LIK +TD+ +H +K+T KV GF+G G P P+ D E+ I ++E ++P
Sbjct: 61 FPGYILIKMELTDETWHIVKETAKVTGFVG-GNTPFPIPDEEVNKIARRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F+VGE V V DGPF +F G++++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VEFDVGETVRVVDGPFLNFTGVIEDVKPDKGKLRVAVTIFGRSTPVELEFMQVEK 174
>gi|95930698|ref|ZP_01313431.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684]
gi|95133178|gb|EAT14844.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684]
Length = 177
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K ++ R+ G + L E+ +PSE VV ++ G + S R+F
Sbjct: 1 MAMQWYGVHTYSGFENKVKLNLEERIKMLGAEDLFGEVLVPSEVVVELKNGERKTSTRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ + ++ +H +KDT KV GF+G G P P+ D+E+E I ++E +RP
Sbjct: 61 FPGYILVQMELNNETWHIVKDTAKVTGFVGGGTTPPPIPDAEVEKITARMEEGAERPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +EVGE V V DGPF +F GIV++V +K ++ V V IFGRVTPVEL + QVEK
Sbjct: 121 VQYEVGETVRVVDGPFLNFTGIVEDVKPDKGKLKVMVSIFGRVTPVELDFIQVEK 175
>gi|262163615|ref|ZP_06031358.1| transcription antitermination protein NusG [Vibrio mimicus VM223]
gi|262027982|gb|EEY46644.1| transcription antitermination protein NusG [Vibrio mimicus VM223]
Length = 148
Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ L E+ +P+E VV +R G++ SER+FFPGYVL++ +M D+ +H ++ P+V+GF+G
Sbjct: 1 MEELFGEVLVPTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIG 60
Query: 91 -TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
T + P+P+TD E + I+N++E A + P FE GE V V+DGPFA FNG V+ VD E
Sbjct: 61 GTSDRPAPITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYE 120
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
KSR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 KSRLKVSVSIFGRATPVELEFGQVEKL 147
>gi|303256436|ref|ZP_07342450.1| transcription termination/antitermination factor NusG
[Burkholderiales bacterium 1_1_47]
gi|331000376|ref|ZP_08324056.1| transcription termination/antitermination factor NusG
[Parasutterella excrementihominis YIT 11859]
gi|302859927|gb|EFL83004.1| transcription termination/antitermination factor NusG
[Burkholderiales bacterium 1_1_47]
gi|329572082|gb|EGG53751.1| transcription termination/antitermination factor NusG
[Parasutterella excrementihominis YIT 11859]
Length = 178
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EK A ++ R++R GL EI +P+E + V+ G+K S RR + G
Sbjct: 5 KWYVVHTYSGMEKSAESALRERIAREGLQDCFEEILVPTEDISEVKNGKKRVSTRRMYSG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ +K +M D+ +H +K+T ++ GFLG N PSP+ +IE I +++EA + P V
Sbjct: 65 YIFVKMIMNDETWHLVKNTARITGFLGGSANKPSPLPAKDIEAIKSKMEAGSEAPRPRVE 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVG V + +GPF FNGI++ V+ +K+R+ V V IFGR TPVELA+N+VEK
Sbjct: 125 FEVGGSVRIKNGPFTDFNGIIEEVNYDKNRLRVMVSIFGRDTPVELAFNEVEK 177
>gi|134096333|ref|YP_001101408.1| transcription antitermination protein [Herminiimonas
arsenicoxydans]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R++R+G+ +I +P+E V+ V+ G+K SERRFFPGYVL++ MTD+ +H +K+T K
Sbjct: 7 RIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFPGYVLVEMEMTDETWHLVKNTSK 66
Query: 85 VIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V GF+G N P+P+ E++ IM Q++ V++P V +EVGE V + DGPF FNG V
Sbjct: 67 VTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKVLYEVGEMVRIKDGPFTDFNGNV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 127 EEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 159
>gi|325916475|ref|ZP_08178744.1| transcription antitermination protein nusG [Xanthomonas vesicatoria
ATCC 35937]
gi|325537264|gb|EGD08991.1| transcription antitermination protein nusG [Xanthomonas vesicatoria
ATCC 35937]
Length = 185
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 119/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIVRTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|225874474|ref|YP_002755933.1| transcription termination/antitermination factor NusG
[Acidobacterium capsulatum ATCC 51196]
gi|225791805|gb|ACO31895.1| transcription termination/antitermination factor NusG
[Acidobacterium capsulatum ATCC 51196]
Length = 205
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 116/173 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ESI GR+ GL + + + IP+E V + G+K ER F PG
Sbjct: 31 KWYIIHAYSGFERKVKESIEGRVQAFGLQNKIGRVMIPTEPVTEIVNGKKRTIERVFLPG 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + + ++H IKDTP+V GFLGTG+ P ++++E+ I+ + + + ++P + F
Sbjct: 91 YVLVEMDLDNDLWHIIKDTPRVTGFLGTGDKPVALSEAEVSSILFRTDVSKEKPRLKIKF 150
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E E V +++GPFA+FNG+V +++E++ + V V IFGR TPVEL + +VEKI
Sbjct: 151 EKNESVRITEGPFANFNGVVDDINEDRETLKVMVTIFGRSTPVELEFAKVEKI 203
>gi|78221834|ref|YP_383581.1| transcription antitermination protein nusG [Geobacter
metallireducens GS-15]
gi|78193089|gb|ABB30856.1| transcription antitermination protein nusG [Geobacter
metallireducens GS-15]
Length = 175
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ GL+ EI IPSE VV ++KG K S R+F
Sbjct: 1 MAKKWYGVHTYSGFENKVRLSLSERIKNLGLEESFGEILIPSETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ ++D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELSDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VQFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|91774623|ref|YP_544379.1| transcription antitermination protein nusG [Methylobacillus
flagellatus KT]
gi|91708610|gb|ABE48538.1| transcription antitermination protein nusG [Methylobacillus
flagellatus KT]
Length = 179
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY VQ +S EK +++ R++RS + L +I +P E VV ++ G K +ER+ +PG
Sbjct: 5 RWYAVQAFSGFEKSVKKALEERIARSDIGDLFGDILVPVEEVVEMKNGVKSITERKLYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M+D+ +H +K TP+V F+G T + P+P+ D E+E I+ +++ + P +
Sbjct: 65 YVLVQMQMSDESWHLVKSTPRVTAFIGGTAQKPTPIKDKEVEIILQRMDESKSNPTQKLT 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPF F+G V++V+ EKS++ V VVIFGR TPVEL ++QVEK
Sbjct: 125 FDKGESVRVIDGPFKDFSGSVEDVNYEKSKLRVSVVIFGRATPVELDFSQVEK 177
>gi|15892099|ref|NP_359813.1| transcription antitermination protein NusG [Rickettsia conorii str.
Malish 7]
gi|32129825|sp|Q92J91|NUSG_RICCN RecName: Full=Transcription antitermination protein nusG
gi|15619223|gb|AAL02714.1| transcription antitermination protein NusG [Rickettsia conorii str.
Malish 7]
Length = 192
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 111/172 (64%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + H +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDMLRKIAKQNMTHFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|116514973|ref|YP_802602.1| hypothetical protein BCc_024 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256827|gb|ABJ90509.1| transcription antitermination protein [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 180
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++Q +S E + ++SI + + ++ IPSE V+ ++KG++ S+ +FFPG
Sbjct: 7 KWYVLQTFSGFENQVLQSIINNEKIKKMKEIFGKVIIPSEEVIEIKKGKRKKSDYKFFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LI +M + +H IK+ PKV+GF+G+ E P+PV + EI I+++++ +P
Sbjct: 67 YILIHMIMNNYSWHIIKNLPKVLGFIGSSSEQPTPVNNHEINLILDKLKKIGDKPRPKKI 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF+ FNGIV+ +D EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 127 FEPGENVRVNDGPFSDFNGIVETIDYEKNRLKVSVSIFGRSTPVELDFRQVEK 179
>gi|77165799|ref|YP_344324.1| transcription antitermination protein NusG [Nitrosococcus oceani
ATCC 19707]
gi|254433234|ref|ZP_05046742.1| transcription termination/antitermination factor NusG
[Nitrosococcus oceani AFC27]
gi|76884113|gb|ABA58794.1| transcription antitermination protein nusG [Nitrosococcus oceani
ATCC 19707]
gi|207089567|gb|EDZ66838.1| transcription termination/antitermination factor NusG
[Nitrosococcus oceani AFC27]
Length = 177
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E++ SI R+ R GL +I +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSIEERVRRYGLQESFGDILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +KD P+V+GF+ GT + P+ +T++E E I+ ++ ++P
Sbjct: 61 FPGYVLVQMEMGDETWHLVKDVPRVLGFIGGTSDKPAAITEAEAEEILERIREGAEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V +GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEMVRVIEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176
>gi|304415281|ref|ZP_07395976.1| transcription antitermination protein [Candidatus Regiella
insecticola LSR1]
gi|304282871|gb|EFL91339.1| transcription antitermination protein [Candidatus Regiella
insecticola LSR1]
Length = 181
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQV+S E + +S+ + ++ EI +P+E ++ +R G++ SER+FFPG
Sbjct: 8 RWYVVQVFSRFEGRVAQSLREYIKLKEVEDQFGEIMVPTEELLEMRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M + +H ++ P+V+GF+G T + P+P++D E+ IM +++ +P
Sbjct: 68 YVLVQMSMNETSWHLVRSVPRVMGFIGGTSDRPAPISDKEVNAIMARLQQIGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+R+ V V IFGR TPVEL ++Q+ K
Sbjct: 128 FEPGESVRVNDGPFADFNGTVEKVDYEKNRLTVSVSIFGRATPVELDFSQIGK 180
>gi|21241725|ref|NP_641307.1| transcription antitermination protein NusG [Xanthomonas axonopodis
pv. citri str. 306]
gi|21107094|gb|AAM35843.1| transcription antitermination factor [Xanthomonas axonopodis pv.
citri str. 306]
Length = 185
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRSGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|297170766|gb|ADI21788.1| transcription antiterminator [uncultured gamma proteobacterium
HF0130_22O14]
Length = 177
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QV+SN E K ++ R+ +GL +T++ +P E VV ++ G K +ER+F
Sbjct: 1 MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSQITDVVVPIEEVVELKGGEKKTTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVLI+ M D+ +H +K P V+GF+ GT E P+P+TD+E +I+N+VE + P
Sbjct: 61 FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPF F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK
Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176
>gi|294668063|ref|ZP_06733182.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292601870|gb|EFF45698.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 185
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|166710815|ref|ZP_02242022.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 185
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|107103787|ref|ZP_01367705.1| hypothetical protein PaerPA_01004858 [Pseudomonas aeruginosa PACS2]
gi|313111429|ref|ZP_07797233.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
39016]
gi|310883735|gb|EFQ42329.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
39016]
Length = 159
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H +KDTP+
Sbjct: 7 RVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHLVKDTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+TD E + I+ +V + +P FE GE V V DGPFA FNG+V
Sbjct: 67 VMGFIGGTADKPAPITDREADAILRRVADSGDKPKPKTLFEPGETVRVIDGPFADFNGVV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 127 EEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159
>gi|78046542|ref|YP_362717.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|78034972|emb|CAJ22617.1| transcription antitermination factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 185
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEGGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|39997959|ref|NP_953910.1| transcription antitermination protein NusG [Geobacter
sulfurreducens PCA]
gi|39984904|gb|AAR36260.1| transcription antitermination protein NusG [Geobacter
sulfurreducens PCA]
gi|298506900|gb|ADI85623.1| transcription antitermination protein NusG [Geobacter
sulfurreducens KN400]
Length = 175
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K S+ R+ GL+ EI IPSE VV ++KG K S R+F
Sbjct: 1 MSKKWYGVHTYSGFENKVRLSLQERVKNLGLEEFFGEILIPSETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELNDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VEFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|302344368|ref|YP_003808897.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075]
gi|301640981|gb|ADK86303.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075]
Length = 177
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YS E K ES+ R+ GLD +I +P E+VV + KG++ S R+F
Sbjct: 1 MAKKWYIVHTYSGFENKVRESLTERVRSHGLDDYFGQILVPMEKVVEMVKGQRRESSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGY++++ M D+ +H +KDT KV GF+G E +P+P++D E + I++Q++ + P
Sbjct: 61 YPGYIVVEMEMNDETWHLVKDTAKVTGFVGGSETDPTPISDEEAQRILSQMQEGTKAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPF +FNG V+ V+ EK ++ V + IFGR TPVEL + QV K+
Sbjct: 121 KFNFEEGDEVRVIDGPFNNFNGSVEEVNPEKGKLRVLISIFGRATPVELEFVQVTKV 177
>gi|114331777|ref|YP_747999.1| transcription antitermination protein NusG [Nitrosomonas eutropha
C91]
gi|114308791|gb|ABI60034.1| transcription antitermination protein nusG [Nitrosomonas eutropha
C91]
Length = 177
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS EK +++ R+ + EI IP E VV V+ G+K SER+F
Sbjct: 1 MSKKWYAVHTYSGFEKSVKKALRDRIVLHKFEDKFGEILIPVEEVVEVKGGQKNISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+LI+ MTD+ +H +K TPKV GF+G T P P++ EIE I NQV V++P
Sbjct: 61 FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSMQPIPISRKEIESIFNQVREGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE GE V V +GPF F+G V+ V+ +K+++ V V IFGR TPVEL ++QV+KI
Sbjct: 121 KVIFEAGEAVRVKEGPFTDFHGNVEEVNYDKNKLRVSVSIFGRPTPVELDFHQVDKI 177
>gi|255320104|ref|ZP_05361296.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SK82]
gi|262370138|ref|ZP_06063465.1| transcription antitermination protein [Acinetobacter johnsonii
SH046]
gi|262379961|ref|ZP_06073116.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SH164]
gi|255302822|gb|EET82047.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SK82]
gi|262298155|gb|EEY86069.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SH164]
gi|262315177|gb|EEY96217.1| transcription antitermination protein [Acinetobacter johnsonii
SH046]
Length = 177
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQREADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK V
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVLYEKSRLTLTINVFNRPTQVELEFRQVEKSV 177
>gi|160895954|ref|YP_001561536.1| NusG antitermination factor [Delftia acidovorans SPH-1]
gi|160361538|gb|ABX33151.1| NusG antitermination factor [Delftia acidovorans SPH-1]
Length = 194
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RS + I +P+E VV ++ G++ +ERR FPG
Sbjct: 21 RWYIVHAYSGMEKAVERNIIERIARSDMQSKFGRILVPTEEVVEMKNGQRRTTERRLFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G +N P+P+++ E+ I++Q++ ++P V
Sbjct: 81 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVSQMQEGTEKPRHKVE 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPF FNG V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 141 FMPGELVRVKEGPFTDFNGSVEEVNYEKSRLRVSVMIFGRSTPVELEFAQVEK 193
>gi|319778783|ref|YP_004129696.1| Transcription antitermination protein NusG [Taylorella
equigenitalis MCE9]
gi|317108807|gb|ADU91553.1| Transcription antitermination protein NusG [Taylorella
equigenitalis MCE9]
Length = 180
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V V+S EKK ++ R+ ++G+ I +P+E +V R ++ S+R+
Sbjct: 1 MSLRWYVVHVFSGMEKKVYAALQERIEQAGMQEYFGRILVPTEEIVETRGSKRSVSQRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+L++ +H +K T +V GFLG G N PSP+ E++ ++ +E +P
Sbjct: 61 FPGYILVEMEFNPDTWHLVKSTNRVTGFLGGGSNSKPSPIPQKEVDSLLANLEEGGGKPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE + + DGPFA FNG+V V+ EK+RV V V+IFGR TPVEL ++QVEK
Sbjct: 121 PKVLFEVGETLRIKDGPFADFNGVVDQVNYEKNRVTVIVMIFGRSTPVELDFSQVEK 177
>gi|67459543|ref|YP_247167.1| transcription antitermination protein NusG [Rickettsia felis
URRWXCal2]
gi|75536052|sp|Q4UKC9|NUSG_RICFE RecName: Full=Transcription antitermination protein nusG
gi|67005076|gb|AAY62002.1| Transcription antitermination protein NusG [Rickettsia felis
URRWXCal2]
Length = 192
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 111/172 (64%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + R+++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDMLRRIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKETKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVIVTDGPFETFTGTVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|116748979|ref|YP_845666.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|116698043|gb|ABK17231.1| transcription antitermination protein nusG [Syntrophobacter
fumaroxidans MPOB]
Length = 180
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 109/172 (63%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIV YS E K ++ R+ G L +I +P+E+V+ + KG++ S R+F+PGY
Sbjct: 9 WYIVHTYSGFEHKVKSALEERIKAEGKGSLFGQILVPTEKVIELVKGQRKASSRKFYPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+L++ + D +H ++ TPKV GF+G+ E P P++D E E I+ Q+E Q+P FE
Sbjct: 69 ILVQMELNDDTWHLVRHTPKVTGFIGSQERPIPLSDEEAETIILQMEEGAQKPRPKFRFE 128
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPFASFNGIV V +K +V V V IFGR TPVEL + QV +I
Sbjct: 129 KGDEVRVVDGPFASFNGIVDEVMPDKGKVRVLVSIFGRSTPVELDFVQVNRI 180
>gi|226328678|ref|ZP_03804196.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198]
gi|225201864|gb|EEG84218.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198]
Length = 147
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENP 95
E+ +P+E VV +R G++ SER+FFPGYVL++ VM D +H +++ P+V+GF+G T + P
Sbjct: 7 EVMVPTEEVVEIRSGQRRKSERKFFPGYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRP 66
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+P++D E++ IMN+++ +P FE GE V VSDGPFA FNG+V+ VD EKSR+ V
Sbjct: 67 APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKV 126
Query: 156 EVVIFGRVTPVELAYNQVEK 175
V IFGR TPVEL ++QVEK
Sbjct: 127 SVSIFGRATPVELDFSQVEK 146
>gi|33520005|ref|NP_878837.1| transcription antitermination protein NusG [Candidatus Blochmannia
floridanus]
gi|33504351|emb|CAD83244.1| transcription antitermination protein NusG [Candidatus Blochmannia
floridanus]
Length = 181
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + ++ + + + +I +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFENQVARALKEHIKIKDMSSMFGDIMVPTEEVVEMRSGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM +H +K+ PKV+GF+G T + P+P+ D E++ I+ +++ +P
Sbjct: 68 YVLVQMVMNSSSWHLVKNVPKVLGFVGGTCDKPAPIGDKEVDAIICKLKQIGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L + QVEK
Sbjct: 128 FEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRSTPVDLDFAQVEK 180
>gi|317153969|ref|YP_004122017.1| transcription termination/antitermination factor NusG
[Desulfovibrio aespoeensis Aspo-2]
gi|316944220|gb|ADU63271.1| transcription termination/antitermination factor NusG
[Desulfovibrio aespoeensis Aspo-2]
Length = 185
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E++ VE + R+G D L+ E+ +P+E+VV + KG + S R+F+P
Sbjct: 13 RWYIVHTYSGFEQR-VEQTVREMMRTGQDKGLIEEVVMPTEKVVEMVKGERKTSTRKFYP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY++IK +TD +H I+ P+V GF+G P+P+ DSE E+I+N +E+ ++P
Sbjct: 72 GYIMIKMTLTDDTWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFN 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K
Sbjct: 132 FERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 184
>gi|297170819|gb|ADI21839.1| transcription antiterminator [uncultured gamma proteobacterium
HF0130_25M15]
Length = 177
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QV+SN E K ++ R+ +GL +T++ +P E VV ++ G K +ER+F
Sbjct: 1 MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSEITDVVVPIEEVVELKGGEKKTTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVLI+ M D+ +H +K P V+GF+ GT E P+P+TD+E +I+N+VE + P
Sbjct: 61 FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPF F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK
Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176
>gi|322418352|ref|YP_004197575.1| NusG antitermination factor [Geobacter sp. M18]
gi|320124739|gb|ADW12299.1| NusG antitermination factor [Geobacter sp. M18]
Length = 175
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ ++ EI IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D +H +K+T KV GF+G G NP P+ D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDEEVNKITKRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F+G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174
>gi|197117311|ref|YP_002137738.1| transcription termination/antitermination factor NusG [Geobacter
bemidjiensis Bem]
gi|253701934|ref|YP_003023123.1| NusG antitermination factor [Geobacter sp. M21]
gi|197086671|gb|ACH37942.1| transcription termination/antitermination factor NusG [Geobacter
bemidjiensis Bem]
gi|251776784|gb|ACT19365.1| NusG antitermination factor [Geobacter sp. M21]
Length = 175
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ ++ EI IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D +H +K+T KV GF+G G NP P+ D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDDEVAKITKRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F+G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174
>gi|262373977|ref|ZP_06067254.1| transcription termination/antitermination factor NusG
[Acinetobacter junii SH205]
gi|262310988|gb|EEY92075.1| transcription termination/antitermination factor NusG
[Acinetobacter junii SH205]
Length = 177
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGFEKQVLRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK V
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTV 177
>gi|58583220|ref|YP_202236.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58427814|gb|AAW76851.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 203
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 21 RWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 80
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T +V+GF+G T + P P+ D E + I+ +V+
Sbjct: 81 YVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQDG 140
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 141 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 200
Query: 174 EK 175
EK
Sbjct: 201 EK 202
>gi|323700795|ref|ZP_08112707.1| NusG antitermination factor [Desulfovibrio sp. ND132]
gi|323460727|gb|EGB16592.1| NusG antitermination factor [Desulfovibrio desulfuricans ND132]
Length = 181
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E++ VE + R+G D L+ E+ +P+E++V + KG + S R+F+P
Sbjct: 9 RWYIVHTYSGFEQR-VEQTVREMMRTGQDKGLIEEVVMPTEKIVEMVKGERKTSTRKFYP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY++IK ++TD +H I+ P+V GF+G P+P+ DSE E+I+N +E+ ++P
Sbjct: 68 GYIMIKMILTDDSWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFN 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K
Sbjct: 128 FERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 180
>gi|84625056|ref|YP_452428.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188575476|ref|YP_001912405.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|84368996|dbj|BAE70154.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188519928|gb|ACD57873.1| transcription termination/antitermination factor NusG [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 185
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 120/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T +V+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|289803599|ref|ZP_06534228.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 153
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ L E+ +P+E VV +R G++ SER+FFPGYVL++ VM D +H ++ P+V+GF+G
Sbjct: 7 MEELFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG 66
Query: 91 -TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
T + P+P++D E++ IMN+++ +P FE GE V V+DGPFA FNG+V+ VD E
Sbjct: 67 GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYE 126
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEK 175
KSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 KSRLKVSVSIFGRATPVELDFSQVEK 152
>gi|295698613|ref|YP_003603268.1| transcription termination/antitermination factor NusG [Candidatus
Riesia pediculicola USDA]
gi|291157364|gb|ADD79809.1| transcription termination/antitermination factor NusG [Candidatus
Riesia pediculicola USDA]
Length = 182
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++Q +S E K + + + +D EI IPSE ++ ++ G++ SER+FFPG
Sbjct: 9 KWYVIQSFSGFETKVRKYLKKYIKLYSMDSYFGEIMIPSEGIIEMKGGQRRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M +K +H I+ PKV+GF+G T + P+ V EIE I+ +++ +P
Sbjct: 69 YVLVQMIMNEKTWHFIRGIPKVMGFVGGTSDRPASVHQREIEDIVEKLQKIGDQPRPKTL 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + VS GPFA FNGI + +D EK+R+ V V IFGR TPVEL ++QVEKI
Sbjct: 129 FEPGEVIRVSSGPFADFNGIAEEIDYEKNRLKVSVSIFGRSTPVELDFSQVEKI 182
>gi|90581318|ref|ZP_01237115.1| transcription antitermination protein NusG [Vibrio angustum S14]
gi|90437557|gb|EAS62751.1| transcription antitermination protein NusG [Vibrio angustum S14]
Length = 150
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
G++ E+ +P+E VV VR G++ SER+FFPGYVL++ VM D+ +H ++ P+V+GF+
Sbjct: 3 GMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQMVMNDETWHLVRSIPRVMGFI 62
Query: 90 G-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
G T + P+P++D E + I+N+++ A + PV FE GE V V+DGPFA FNG +++VD
Sbjct: 63 GGTSDRPAPISDKEADAILNRLQQASESPVHKTVFEPGEVVRVTDGPFADFNGTIESVDY 122
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
+KSRV V V IFGR TPVEL + Q+EK
Sbjct: 123 DKSRVKVSVSIFGRATPVELEFGQIEK 149
>gi|294627829|ref|ZP_06706408.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292597743|gb|EFF41901.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 185
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 119/182 (65%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+ R+ ++ ++ +P+E V+ +R G+K SER+FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRIVRAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 63 YVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QV
Sbjct: 123 VEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQV 182
Query: 174 EK 175
EK
Sbjct: 183 EK 184
>gi|313496807|gb|ADR58173.1| NusG [Pseudomonas putida BIRD-1]
Length = 159
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H +KDTP+
Sbjct: 7 RVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHLVKDTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+TD E E I+ +V +P FE GE V V DGPFA FNG V
Sbjct: 67 VMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVIDGPFADFNGSV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 127 EEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 159
>gi|160871908|ref|ZP_02062040.1| transcription termination/antitermination factor NusG
[Rickettsiella grylli]
gi|159120707|gb|EDP46045.1| transcription termination/antitermination factor NusG
[Rickettsiella grylli]
Length = 215
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+VQV S E+K ++++ R+ ++ L +I +P+E V+ +R+GRK + R+F+
Sbjct: 40 SKQWYVVQVRSGYERKVLDALNERIKQNDLTEKFGQIIVPTEEVIEIRQGRKRKTARKFY 99
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M + ++ ++ TP VI F+G T + P P+ + E+ I+ +++ V +P
Sbjct: 100 PGYVLVEMDMGEDSWYLVQKTPGVIKFIGGTSDKPVPLGEREVSKILQRMQEGVDKPRPK 159
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPFA FNG V+ V+ EK+R+ V V+IFGR TPVEL + QV+K
Sbjct: 160 VLFEVGEVVRVVDGPFADFNGEVEEVNYEKNRLRVSVIIFGRSTPVELEFGQVKK 214
>gi|262280707|ref|ZP_06058490.1| transcription termination/antitermination factor NusG
[Acinetobacter calcoaceticus RUH2202]
gi|299771836|ref|YP_003733862.1| transcription antitermination protein [Acinetobacter sp. DR1]
gi|262257607|gb|EEY76342.1| transcription termination/antitermination factor NusG
[Acinetobacter calcoaceticus RUH2202]
gi|298701924|gb|ADI92489.1| transcription antitermination protein [Acinetobacter sp. DR1]
Length = 177
Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVLRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK +
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|121609218|ref|YP_997025.1| NusG antitermination factor [Verminephrobacter eiseniae EF01-2]
gi|121553858|gb|ABM58007.1| transcription antitermination protein nusG [Verminephrobacter
eiseniae EF01-2]
Length = 212
Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV Y EK +I R+ R+G+ I +P+E+VV ++ G++ +ERR FPG
Sbjct: 39 RWYIVHAYLGMEKAVERNIQERIHRAGMQDKFGRILVPTEQVVEMKNGQRKTTERRLFPG 98
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+L++ VM D +H +K T KV GF+G +N P ++D+E++ I++ + +P +
Sbjct: 99 YMLVEMVMDDDTWHLVKHTNKVKGFVGGSKNRPPSISDAEVQSIVSHMIEGADKPRHKME 158
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VGE+V V +GPF FNG+V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 159 LMVGEQVRVKEGPFTDFNGMVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 211
>gi|148263129|ref|YP_001229835.1| NusG antitermination factor [Geobacter uraniireducens Rf4]
gi|146396629|gb|ABQ25262.1| transcription antitermination protein nusG [Geobacter
uraniireducens Rf4]
Length = 175
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ GL+ EI IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLSERIKNLGLEDKFGEILIPCETVVELKKGEKRTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELDDETWHVVKETSKVTGFVG-GNNPFAIPDDEVAKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|225012649|ref|ZP_03703084.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A]
gi|225003182|gb|EEG41157.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A]
Length = 184
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K + I +SR G DHLV +I +P+E+V+ +R G+K+N ER +FPG
Sbjct: 9 KWYVVRAVSGQEAKIKDYIMSEISRFGYDHLVEDILVPTEKVIQIRNGKKINKERVYFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y+++KA +T ++ H IK VIGFLG G P P+ SE+ ++ +V E A+ S
Sbjct: 69 YIMVKANLTGELPHIIKSVTNVIGFLGETKGGEPVPLRVSEVNRMLGKVDELALATEHVS 128
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F GE V V DGPF F G ++NV+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 129 IPFTEGENVKVIDGPFNGFTGAIENVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184
>gi|226951781|ref|ZP_03822245.1| transcription antitermination protein [Acinetobacter sp. ATCC
27244]
gi|294649029|ref|ZP_06726475.1| transcription antitermination protein NusG [Acinetobacter
haemolyticus ATCC 19194]
gi|226837321|gb|EEH69704.1| transcription antitermination protein [Acinetobacter sp. ATCC
27244]
gi|292825060|gb|EFF83817.1| transcription antitermination protein NusG [Acinetobacter
haemolyticus ATCC 19194]
Length = 177
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGFEKQVMRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNLGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK V
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTV 177
>gi|224370702|ref|YP_002604866.1| NusG [Desulfobacterium autotrophicum HRM2]
gi|223693419|gb|ACN16702.1| NusG [Desulfobacterium autotrophicum HRM2]
Length = 176
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 111/176 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V VYS E K ++ +++ SG EI +P+E VV + G+K S R+F
Sbjct: 1 MSLKWYVVHVYSGFEHKVKLALEDKVANSGCADSFDEILVPTEHVVELVNGKKRESSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D+ +H + TPKV GFLG P+P++D+E I+ ++E +P
Sbjct: 61 YPGYILVRMSLNDETWHIVNSTPKVTGFLGGKNKPAPISDAEAAAIVERMEQGKNKPQPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+FE G+ V V+DGPF +FNG V+ + +K +V V V IFGR TPVEL + QV KI
Sbjct: 121 YYFEPGDDVRVTDGPFTNFNGTVEESNPDKGKVRVLVSIFGRATPVELDFVQVTKI 176
>gi|330505219|ref|YP_004382088.1| transcription antitermination protein NusG [Pseudomonas mendocina
NK-01]
gi|328919505|gb|AEB60336.1| transcription antitermination protein NusG [Pseudomonas mendocina
NK-01]
Length = 159
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H IKDTP+
Sbjct: 7 RVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHLIKDTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+T+ E E I+ +V + +P FE GE V V DGPFA F G+V
Sbjct: 67 VMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKPKTLFEPGEMVRVVDGPFADFGGVV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 EEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 158
>gi|269469123|gb|EEZ80671.1| hypothetical protein Sup05_0528 [uncultured SUP05 cluster
bacterium]
Length = 177
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY++ S E K +I ++R GL+ +V ++ IP+E+VV ++ G+K +ER+F
Sbjct: 1 MSKRWYVLHARSGYEAKVKIAIEEAVAREGLEDIVGDVMIPTEQVVELKDGQKKTAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+L+ +T+ + +K+T VIGF+G + PSP+T E++ IM +V+ +P
Sbjct: 61 FPGYMLVSMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKIMARVQEGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V ++ GE + V+DGPF F G V++VD EK+ + VEV+IFGR TPVEL ++QV K
Sbjct: 121 KVAYQPGEEILVTDGPFNEFTGTVESVDYEKNLLKVEVLIFGRTTPVELEFSQVAK 176
>gi|51244964|ref|YP_064848.1| transcription antitermination protein NusG [Desulfotalea
psychrophila LSv54]
gi|50876001|emb|CAG35841.1| probable transcription antitermination protein NusG [Desulfotalea
psychrophila LSv54]
Length = 177
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYI+Q +S E+K ++ R+ + GL+ +I +P+E+VV + KG + S ++F
Sbjct: 1 MAKQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKF 60
Query: 61 FPGYVLIKAVMTDKVYHTI-KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+LI +TD+ +HT+ ++ P+V+GF+G NP P++D E I+ +++ +RP
Sbjct: 61 FPGYMLINMELTDETWHTVHENMPRVVGFVGDDRNPMPLSDEEAAKIIGRIQEGSERPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V F+VGE V V DGPF++F G+V V +K RV V V IFGR TPVEL + QV
Sbjct: 121 KVIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174
>gi|222056717|ref|YP_002539079.1| NusG antitermination factor [Geobacter sp. FRC-32]
gi|221566006|gb|ACM21978.1| NusG antitermination factor [Geobacter sp. FRC-32]
Length = 175
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ GL+ E+ IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLLERIKNLGLEEKFGEVLIPCETVVELKKGEKRTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELDDDTWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITQRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V EK ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFAGVVEDVKPEKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|169634599|ref|YP_001708335.1| transcription antitermination protein [Acinetobacter baumannii SDF]
gi|169797458|ref|YP_001715251.1| transcription antitermination protein [Acinetobacter baumannii AYE]
gi|184156618|ref|YP_001844957.1| transcription antiterminator [Acinetobacter baumannii ACICU]
gi|213155728|ref|YP_002317773.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB0057]
gi|215484895|ref|YP_002327134.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB307-0294]
gi|239500983|ref|ZP_04660293.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB900]
gi|260556350|ref|ZP_05828569.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii ATCC 19606]
gi|294838493|ref|ZP_06783176.1| transcription antitermination protein [Acinetobacter sp. 6013113]
gi|294840899|ref|ZP_06785582.1| transcription antitermination protein [Acinetobacter sp. 6014059]
gi|294859137|ref|ZP_06796906.1| transcription antitermination protein [Acinetobacter sp. 6013150]
gi|301346453|ref|ZP_07227194.1| transcription antitermination protein [Acinetobacter baumannii
AB056]
gi|301512021|ref|ZP_07237258.1| transcription antitermination protein [Acinetobacter baumannii
AB058]
gi|301597215|ref|ZP_07242223.1| transcription antitermination protein [Acinetobacter baumannii
AB059]
gi|169150385|emb|CAM88282.1| transcription antitermination protein [Acinetobacter baumannii AYE]
gi|169153391|emb|CAP02518.1| transcription antitermination protein [Acinetobacter baumannii]
gi|183208212|gb|ACC55610.1| Transcription antiterminator [Acinetobacter baumannii ACICU]
gi|193076139|gb|ABO10752.2| transcription antitermination protein [Acinetobacter baumannii ATCC
17978]
gi|213054888|gb|ACJ39790.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB0057]
gi|213985795|gb|ACJ56094.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB307-0294]
gi|260410405|gb|EEX03704.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii ATCC 19606]
gi|322506505|gb|ADX01959.1| nusG [Acinetobacter baumannii 1656-2]
gi|323516384|gb|ADX90765.1| transcription antiterminator [Acinetobacter baumannii TCDC-AB0715]
Length = 177
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVMRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|260550471|ref|ZP_05824681.1| transcription termination/antitermination factor NusG
[Acinetobacter sp. RUH2624]
gi|260406386|gb|EEW99868.1| transcription termination/antitermination factor NusG
[Acinetobacter sp. RUH2624]
gi|325124250|gb|ADY83773.1| transcription antitermination protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 177
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVMRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|71279510|ref|YP_271421.1| transcription termination/antitermination factor NusG [Colwellia
psychrerythraea 34H]
gi|71145250|gb|AAZ25723.1| transcription termination/antitermination factor NusG [Colwellia
psychrerythraea 34H]
Length = 195
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +++ + GL EI +P+E VV +R G+K S R+FFPG
Sbjct: 22 RWYVVQAFSGYEGRVQKTLLEHIEIHGLQEKFGEILVPTEEVVEMRAGQKRKSSRKFFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M +H +K P+V+GF+ GT + P+P+T E + I+ ++E +P
Sbjct: 82 YVLVQMEMDVDAWHLVKSVPRVLGFIGGTSDRPAPITKKEADRILQRLEET-DKPKPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPFA FNG+V+ +D EK+R+ V V+IFGR TPV+L + QVEK
Sbjct: 141 FEPGEVIRVIDGPFADFNGVVEELDYEKNRIKVSVLIFGRSTPVDLEFGQVEK 193
>gi|167855963|ref|ZP_02478710.1| transcription antitermination protein NusG [Haemophilus parasuis
29755]
gi|167852900|gb|EDS24167.1| transcription antitermination protein NusG [Haemophilus parasuis
29755]
Length = 192
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+++Q +S E + ++ + + E+ +P+E VV GR+ +ER+FFPG
Sbjct: 17 RWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ SE E I+N+V+ +P
Sbjct: 77 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQSEAERILNRVQETADKPRHRTE 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 137 FHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 189
>gi|311693259|gb|ADP96132.1| NusG antitermination factor [marine bacterium HP15]
Length = 159
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R++ ++ EI +P+E VV +R+G+K SER+F+PGYVL++ M D +H +K+TP+
Sbjct: 7 RVALHEMEDRFGEILVPTEEVVEMREGKKRKSERKFYPGYVLVQMEMDDATWHLVKNTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+T+ E E I+ +VE+ +P FE GE V V +GPFA FNG+V
Sbjct: 67 VLGFIGGTKDKPAPITEKEAEAILRRVESGADKPKPKTLFEPGEIVRVVEGPFADFNGVV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 127 EEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 158
>gi|326566153|gb|EGE16309.1| transcription antitermination protein [Moraxella catarrhalis
103P14B1]
gi|326566163|gb|EGE16318.1| transcription antitermination protein [Moraxella catarrhalis
12P80B1]
gi|326577248|gb|EGE27141.1| transcription antitermination protein [Moraxella catarrhalis
101P30B1]
gi|326577813|gb|EGE27681.1| transcription antitermination protein [Moraxella catarrhalis O35E]
Length = 176
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+Q +S E + S+ R+ RS E+ +P+E VV +R+G+K +++ FPG
Sbjct: 2 RWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKYTMQQKLFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI M + +H ++ P + GF+G T ENP+P+T E + I+N++ P
Sbjct: 62 YVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKTM 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+VK VD +KS++H+ V +F R T VEL +N+VEKI
Sbjct: 122 FEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175
>gi|296112479|ref|YP_003626417.1| transcription termination/antitermination protein NusG [Moraxella
catarrhalis RH4]
gi|295920173|gb|ADG60524.1| transcription termination/antitermination protein NusG [Moraxella
catarrhalis RH4]
gi|326561519|gb|EGE11862.1| transcription antitermination protein [Moraxella catarrhalis 7169]
gi|326564354|gb|EGE14583.1| transcription antitermination protein [Moraxella catarrhalis
46P47B1]
gi|326567989|gb|EGE18081.1| transcription antitermination protein [Moraxella catarrhalis BC7]
gi|326570709|gb|EGE20743.1| transcription antitermination protein [Moraxella catarrhalis BC1]
gi|326571264|gb|EGE21287.1| transcription antitermination protein [Moraxella catarrhalis BC8]
gi|326573054|gb|EGE23027.1| transcription antitermination protein [Moraxella catarrhalis CO72]
Length = 176
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+Q +S E + S+ R+ RS E+ +P+E VV +R+G+K +++ FPG
Sbjct: 2 RWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKCTMQQKLFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI M + +H ++ P + GF+G T ENP+P+T E + I+N++ P
Sbjct: 62 YVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKTM 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+VK VD +KS++H+ V +F R T VEL +N+VEKI
Sbjct: 122 FEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175
>gi|229586374|ref|YP_002844875.1| transcription antitermination protein NusG [Rickettsia africae
ESF-5]
gi|228021424|gb|ACP53132.1| Transcription antitermination protein NusG [Rickettsia africae
ESF-5]
Length = 192
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDMLRKIAKQNMTGFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|293610085|ref|ZP_06692386.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827317|gb|EFF85681.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 177
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPG
Sbjct: 3 RWYIIHAYSGYEKQVMRSLTERIQRSAVAGSFGDVLVPTEEVVEMKDGKKRKSERKFFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 63 YVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTM 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 123 FEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|34580870|ref|ZP_00142350.1| transcription antitermination protein NusG [Rickettsia sibirica
246]
gi|28262255|gb|EAA25759.1| transcription antitermination protein NusG [Rickettsia sibirica
246]
Length = 192
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGVEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKDVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|323143688|ref|ZP_08078359.1| transcription termination/antitermination factor NusG
[Succinatimonas hippei YIT 12066]
gi|322416521|gb|EFY07184.1| transcription termination/antitermination factor NusG
[Succinatimonas hippei YIT 12066]
Length = 219
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E++ +++ R+ ++H E+ +P E+V ++ G+K SER+FFPG
Sbjct: 45 RWYVVQAFSGFEQRVAQTLRERIKIHNMEHDFGEVLVPKEKVKEIKDGKKRESERKFFPG 104
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MT + + +K T +V+GF+ GT E P P+T +E + I++++ + + P
Sbjct: 105 YVLVQMRMTSETWQLVKHTDRVLGFIGGTAEKPLPITQAEADKILSRLRESEESPRPKTI 164
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V DG F F G V+ VD EK+RV V + IFGR TPVEL ++QVEK
Sbjct: 165 YEVGEVVRAIDGAFKDFVGTVEKVDYEKNRVTVSIAIFGRATPVELEFSQVEK 217
>gi|157964201|ref|YP_001499025.1| transcription antitermination protein NusG [Rickettsia massiliae
MTU5]
gi|157843977|gb|ABV84478.1| Transcription antitermination protein NusG [Rickettsia massiliae
MTU5]
Length = 193
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 20 QWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 80 YILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKLY 139
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 140 EVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 191
>gi|157825315|ref|YP_001493035.1| transcription antitermination protein NusG [Rickettsia akari str.
Hartford]
gi|157799273|gb|ABV74527.1| transcription antitermination protein NusG [Rickettsia akari str.
Hartford]
Length = 192
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 111/172 (64%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTVSGAEKRIKEDLLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TDK +H +K+ V GFLG+ P +TDSEI++I N +EA + +S +
Sbjct: 79 YILIKMNITDKSWHLVKNISGVTGFLGSKTTPKALTDSEIQNIFNNLEAEAKEAKNSKVY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G+V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVIVTDGPFETFTGMVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|325577261|ref|ZP_08147745.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus parainfluenzae ATCC 33392]
gi|301154974|emb|CBW14437.1| transcription termination factor [Haemophilus parainfluenzae T3T1]
gi|325160843|gb|EGC72964.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus parainfluenzae ATCC 33392]
Length = 185
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 11 RWYVLQAFSGFESRVAITLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ E + I+N++E + ++P
Sbjct: 71 YVLVEMAMNDDTWHLVKSVPRVMGFIGGTPDKPAPISKREADLILNRLEQSAEKPRHRKE 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 131 YQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 183
>gi|302036653|ref|YP_003796975.1| transcription termination/antitermination protein NusG [Candidatus
Nitrospira defluvii]
gi|300604717|emb|CBK41049.1| Transcription termination/antitermination protein NusG [Candidatus
Nitrospira defluvii]
Length = 179
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + S+ R S+ GL + ++ +P+E V+ ++ G++ S R+FFPGY
Sbjct: 6 WYVIHTYAGFEGRVKTSLLERASQMGLTERLGQVLVPTEDVIEIKDGKRRTSRRKFFPGY 65
Query: 65 VLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
VLI+ A + D+ IK+TPKV GF+G G P+P++ E++ ++ QV+A P V
Sbjct: 66 VLIELEAPLADETLQMIKETPKVTGFVGGGAQPTPLSSEEVDSLLKQVDAGAAGPREQVR 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V + DGPF FNG V +VD + SRV V V IFGR TPVEL + QVE+I
Sbjct: 126 FIKGDNVRIVDGPFLGFNGAVDDVDADHSRVKVFVSIFGRSTPVELGFLQVERI 179
>gi|119947054|ref|YP_944734.1| NusG antitermination factor [Psychromonas ingrahamii 37]
gi|119865658|gb|ABM05135.1| transcription antitermination protein nusG [Psychromonas ingrahamii
37]
Length = 183
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +++ + + ++ +I +P+E VV +R G+K SER+FFPG
Sbjct: 9 RWYVVQAFSGYEGRVQKTLLEYIKLNEMEDYFGQILVPTEEVVEMRAGQKRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K +V+GF+G + E P+P++ E+++I+N+++ + P
Sbjct: 69 YVLVEMAMNDDSWHLVKSIDRVMGFIGGSKERPAPISQKEVDNILNRLQESHDSPRPRTL 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V++GPF F G V+ VD EKSR+ V V IFGR TPV+L ++QVEK
Sbjct: 129 FEAGQIVRVTEGPFVDFTGTVEKVDYEKSRLKVSVSIFGRATPVDLDFSQVEK 181
>gi|15603609|ref|NP_246683.1| transcription antitermination protein NusG [Pasteurella multocida
subsp. multocida str. Pm70]
gi|18202810|sp|Q9CK84|NUSG_PASMU RecName: Full=Transcription antitermination protein nusG
gi|12722159|gb|AAK03828.1| NusG [Pasteurella multocida subsp. multocida str. Pm70]
Length = 183
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 9 RWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H ++ P+V+GF+G T + P+P++ E + I+N+++ + ++P
Sbjct: 69 YVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRKE 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 129 FQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181
>gi|254429258|ref|ZP_05042965.1| transcription termination/antitermination factor NusG [Alcanivorax
sp. DG881]
gi|196195427|gb|EDX90386.1| transcription termination/antitermination factor NusG [Alcanivorax
sp. DG881]
Length = 150
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 106/149 (71%), Gaps = 4/149 (2%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ L EI +P+E VV ++ G+K SER+FFPGYVL++ M D +H IK+TPKV+GF+G
Sbjct: 1 MEELFGEILVPTEEVVEIKGGQKRKSERKFFPGYVLVQMEMCDDSWHLIKETPKVMGFIG 60
Query: 91 TG-ENP---SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
+NP SP+T E + I+ +++ AV++P FE GE V V+DGPFA FNG+++ V
Sbjct: 61 EDPKNPGRVSPITQKEADAILRRMDDAVEKPKPKTLFEAGEVVRVNDGPFADFNGVIEEV 120
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 NYEKSRLQVAVMIFGRSTPVELEFGQVEK 149
>gi|255530756|ref|YP_003091128.1| transcription termination/antitermination factor NusG [Pedobacter
heparinus DSM 2366]
gi|255343740|gb|ACU03066.1| transcription termination/antitermination factor NusG [Pedobacter
heparinus DSM 2366]
Length = 180
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR G HLV ++ IP E+ ++ G+K+ ER F+PG
Sbjct: 6 KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKDGKKIAKERNFYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVLI+A++ ++ H IK+ VIGFLG G NP P+ +E+ I+ +V E + Q +V
Sbjct: 66 YVLIEAILDGELEHIIKNINSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V DGPF F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 AYYVGENVKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179
>gi|238650690|ref|YP_002916543.1| transcription antitermination protein NusG [Rickettsia peacockii
str. Rustic]
gi|238624788|gb|ACR47494.1| transcription antitermination protein NusG [Rickettsia peacockii
str. Rustic]
Length = 192
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 109/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|110589446|gb|ABG77232.1| transcription antitermination protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 179
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 21 SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK 80
S+ R++R G++ E+ +P+E VV +R G++ SER+FFPGYVL++ MTD+ +H +K
Sbjct: 22 SLKERVARFGMEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEMTDETWHLVK 81
Query: 81 DTPKVIGFLGT-GENPS-PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138
D PKV+GF+G +P P+TD E + I+ +V+ V++P V FE GE V V DGPF
Sbjct: 82 DVPKVLGFIGGYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVVRVVDGPFND 141
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+G+V+ VD EKSR+ V V+IFGR TPV+L + QVEK
Sbjct: 142 FSGVVEEVDYEKSRLKVSVLIFGRSTPVDLEFGQVEK 178
>gi|157828050|ref|YP_001494292.1| transcription antitermination protein NusG [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165932747|ref|YP_001649536.1| transcription antitermination protein NusG [Rickettsia rickettsii
str. Iowa]
gi|157800531|gb|ABV75784.1| transcription antitermination protein NusG [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165907834|gb|ABY72130.1| transcription antitermination protein [Rickettsia rickettsii str.
Iowa]
Length = 192
Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 109/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEGIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|116625380|ref|YP_827536.1| transcription antitermination protein nusG [Candidatus Solibacter
usitatus Ellin6076]
gi|116228542|gb|ABJ87251.1| transcription antitermination protein nusG [Candidatus Solibacter
usitatus Ellin6076]
Length = 239
Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 110/173 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E K ES+ R G + +I IP+E VV +R G+KV S+R +PG
Sbjct: 67 KWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKRLVYPG 126
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ M D ++H +K+TP+V GF+G G +P P++ E+ I+ + ++ +RP + F
Sbjct: 127 YVLVEMEMNDALWHEVKNTPRVTGFVGGGNSPVPLSADEVNSILYRQASSAERPRPKMTF 186
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E + V + DGPFA+F+G V V+ E+ + V V IFGR TPVEL + QVEK+
Sbjct: 187 EKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239
>gi|270160341|ref|ZP_06188994.1| transcription termination/antitermination factor NusG [Legionella
longbeachae D-4968]
gi|289163818|ref|YP_003453956.1| transcription antitermination protein NusG [Legionella longbeachae
NSW150]
gi|269987153|gb|EEZ93411.1| transcription termination/antitermination factor NusG [Legionella
longbeachae D-4968]
gi|288856991|emb|CBJ10805.1| transcription antitermination protein NusG [Legionella longbeachae
NSW150]
Length = 181
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E + I R L+ + E+ +PSE VV +R G+K S R+FF
Sbjct: 6 SKQWYVVHAYSGYENFVMREIISRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H I+ P+V+GF+G T + P+P+TD E IM +VE V +P
Sbjct: 66 PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V +GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 126 ILFEPGEVVRVKEGPFVDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 180
>gi|118602793|ref|YP_904008.1| transcription antitermination protein nusG [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567732|gb|ABL02537.1| transcription antitermination protein nusG [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 177
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY++ S E K +I + R GL+ LV E+ +P+E+VV ++ G+K +ER+F
Sbjct: 1 MSKKWYVLHARSGFEAKVKIAIEESVIREGLEDLVGEVFVPTEQVVELKDGQKKTAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+L+ +T+ + +K+T VIGF+G+ PSP+T E++ I+ +V+ +P
Sbjct: 61 FPGYMLVNMELTEPSWLLVKNTNNVIGFIGSSSGKPSPITQREVDKILARVQEGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V ++ GE + V DGPF FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK
Sbjct: 121 KVAYQPGEEILVVDGPFNEFNGLVQAVDYEKNFLKVEVLIFGRSTSVELEFSQVEK 176
>gi|303327278|ref|ZP_07357720.1| transcription termination/antitermination factor NusG
[Desulfovibrio sp. 3_1_syn3]
gi|302863266|gb|EFL86198.1| transcription termination/antitermination factor NusG
[Desulfovibrio sp. 3_1_syn3]
Length = 190
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSERRF 60
PRWYIV YS E++ ++I +SR+G D L+ E+ +P+E+V+ + KG K + R+F
Sbjct: 16 PRWYIVHTYSGFEQRVQKTIN-EMSRTGQDQGLIQEVVVPTEKVIELAKGGEKRTTTRKF 74
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV+++ +MTD +H ++ PKV GF+G P+P+ DSE E I+ +E + P
Sbjct: 75 YPGYVMVRMIMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILALMETRQETPRPK 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 135 FNFDRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 189
>gi|68249293|ref|YP_248405.1| transcription antitermination protein NusG [Haemophilus influenzae
86-028NP]
gi|145628433|ref|ZP_01784234.1| transcription antitermination protein NusG [Haemophilus influenzae
22.1-21]
gi|145633842|ref|ZP_01789564.1| transcription antitermination protein NusG [Haemophilus influenzae
3655]
gi|145635955|ref|ZP_01791640.1| transcription antitermination protein NusG [Haemophilus influenzae
PittAA]
gi|145637968|ref|ZP_01793607.1| transcription antitermination protein NusG [Haemophilus influenzae
PittHH]
gi|145639477|ref|ZP_01795082.1| transcription antitermination protein NusG [Haemophilus influenzae
PittII]
gi|145642380|ref|ZP_01797940.1| transcription antitermination protein NusG [Haemophilus influenzae
R3021]
gi|148826639|ref|YP_001291392.1| transcription antitermination protein NusG [Haemophilus influenzae
PittEE]
gi|148827885|ref|YP_001292638.1| transcription antitermination protein NusG [Haemophilus influenzae
PittGG]
gi|229845550|ref|ZP_04465678.1| transcription antitermination protein NusG [Haemophilus influenzae
6P18H1]
gi|229847175|ref|ZP_04467279.1| transcription antitermination protein NusG [Haemophilus influenzae
7P49H1]
gi|260581525|ref|ZP_05849333.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae RdAW]
gi|260583372|ref|ZP_05851143.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae NT127]
gi|319775442|ref|YP_004137930.1| transcription antitermination protein NusG [Haemophilus influenzae
F3047]
gi|319897848|ref|YP_004136045.1| transcription antitermination protein nusg [Haemophilus influenzae
F3031]
gi|329122528|ref|ZP_08251112.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus aegyptius ATCC 11116]
gi|68057492|gb|AAX87745.1| transcription antitermination protein NusG [Haemophilus influenzae
86-028NP]
gi|144980208|gb|EDJ89867.1| transcription antitermination protein NusG [Haemophilus influenzae
22.1-21]
gi|144985284|gb|EDJ92123.1| transcription antitermination protein NusG [Haemophilus influenzae
3655]
gi|145266788|gb|EDK06807.1| transcription antitermination protein NusG [Haemophilus influenzae
PittAA]
gi|145268834|gb|EDK08798.1| transcription antitermination protein NusG [Haemophilus influenzae
PittHH]
gi|145271524|gb|EDK11436.1| transcription antitermination protein NusG [Haemophilus influenzae
PittII]
gi|145272923|gb|EDK12809.1| transcription antitermination protein NusG [Haemophilus influenzae
22.4-21]
gi|148716799|gb|ABQ99009.1| transcription antitermination protein NusG [Haemophilus influenzae
PittEE]
gi|148719127|gb|ABR00255.1| transcription antitermination protein NusG [Haemophilus influenzae
PittGG]
gi|229809851|gb|EEP45573.1| transcription antitermination protein NusG [Haemophilus influenzae
7P49H1]
gi|229811566|gb|EEP47267.1| transcription antitermination protein NusG [Haemophilus influenzae
6P18H1]
gi|260091823|gb|EEW75778.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae RdAW]
gi|260093577|gb|EEW77494.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae NT127]
gi|301169435|emb|CBW29035.1| transcription termination factor [Haemophilus influenzae 10810]
gi|309751684|gb|ADO81668.1| Transcription antitermination protein NusG [Haemophilus influenzae
R2866]
gi|309973786|gb|ADO96987.1| Transcription antitermination protein NusG [Haemophilus influenzae
R2846]
gi|317433354|emb|CBY81733.1| transcription antitermination protein NusG [Haemophilus influenzae
F3031]
gi|317450033|emb|CBY86247.1| transcription antitermination protein NusG [Haemophilus influenzae
F3047]
gi|327473157|gb|EGF18580.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus aegyptius ATCC 11116]
Length = 185
Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 11 RWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++ E + I+N++E +P
Sbjct: 71 YVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRNE 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI
Sbjct: 131 YHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 184
>gi|258406197|ref|YP_003198939.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692]
gi|257798424|gb|ACV69361.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692]
Length = 179
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 111/174 (63%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWYIV +S E++ ++I + + L+ E+ +P+E+VV + KG+K S R+F+
Sbjct: 5 SARWYIVHAFSGYEQRVEKTIAEMIRSGQGEGLIEEVIVPTEKVVEMVKGQKKTSTRKFY 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K ++ DK +H I+ PKV GF+G + P P+T E + I+ +E+ ++P
Sbjct: 65 PGYVLVKMILNDKTWHLIQSIPKVTGFVGGQKRPKPLTQKEADQILQTIESRKEQPRPKF 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ FNG V+ V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 125 HFERGDEVRVIDGPFSGFNGEVEEVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 178
>gi|218886545|ref|YP_002435866.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218757499|gb|ACL08398.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 184
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 109/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+IV YS E++ ++I + L+ E+ +P+E+V+ + KG K S R+F+PG
Sbjct: 12 RWFIVHTYSGFEQRVEQTIREMIRTGQAQGLIEEVVVPTEKVIELVKGEKRTSTRKFYPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV++K MTD +H ++ PKV GF+G P+P+ DSE E I+ +E+ ++P F
Sbjct: 72 YVMVKMAMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILTMMESRQEQPRPKFNF 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 132 ERGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 183
>gi|219871896|ref|YP_002476271.1| transcription antitermination protein NusG [Haemophilus parasuis
SH0165]
gi|219692100|gb|ACL33323.1| transcription antitermination protein NusG [Haemophilus parasuis
SH0165]
Length = 177
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+++Q +S E + ++ + + E+ +P+E VV GR+ +ER+FFPG
Sbjct: 2 RWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ E E I+N+V+ +P
Sbjct: 62 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQREAERILNRVQETADKPRHRTE 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 122 FHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 174
>gi|254361447|ref|ZP_04977587.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213]
gi|261491948|ref|ZP_05988525.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261496249|ref|ZP_05992654.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|153092957|gb|EDN73983.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213]
gi|261308080|gb|EEY09378.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261312415|gb|EEY13541.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 187
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FF
Sbjct: 11 SKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQFGEVLVPTEEVVENVGGKRRKTERKFF 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M D +H +K P+V+GF+G T + P+P+T E + I+N+V+ ++P
Sbjct: 71 PGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTADRPAPITKREADRILNRVQETAEKPRHR 130
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE + V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 131 KEFQPGESILVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 185
>gi|32034812|ref|ZP_00134924.1| COG0250: Transcription antiterminator [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|190151046|ref|YP_001969571.1| transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303249959|ref|ZP_07336161.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303253131|ref|ZP_07339280.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307246643|ref|ZP_07528714.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307248770|ref|ZP_07530783.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307253389|ref|ZP_07535260.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307255628|ref|ZP_07537433.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257804|ref|ZP_07539561.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307260079|ref|ZP_07541791.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307262208|ref|ZP_07543858.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307264409|ref|ZP_07545995.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189916177|gb|ACE62429.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647813|gb|EFL78020.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302651022|gb|EFL81176.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306852515|gb|EFM84749.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306854697|gb|EFM86887.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306859068|gb|EFM91110.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306861477|gb|EFM93466.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863710|gb|EFM95636.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865915|gb|EFM97791.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868082|gb|EFM99908.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870225|gb|EFN01983.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 187
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFPG
Sbjct: 13 RWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ E + I+N+V+ ++P
Sbjct: 73 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRKE 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 133 FQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|307251013|ref|ZP_07532938.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306856953|gb|EFM89084.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 187
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFPG
Sbjct: 13 RWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ E + I+N+V+ ++P
Sbjct: 73 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRKE 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 133 FQPGENVHVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|16272657|ref|NP_438875.1| transcription antitermination protein NusG [Haemophilus influenzae
Rd KW20]
gi|1171875|sp|P43916|NUSG_HAEIN RecName: Full=Transcription antitermination protein nusG
gi|1573719|gb|AAC22374.1| transcription antitermination protein (nusG) [Haemophilus
influenzae Rd KW20]
Length = 185
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 111/174 (63%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 11 RWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+G T + P+P++ E + I+N++E +P
Sbjct: 71 YVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRNE 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V V++GPFA FNG V+ VD EK R+ V V +FGR TPVEL + QVEKI
Sbjct: 131 YHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSMFGRATPVELEFGQVEKI 184
>gi|260913287|ref|ZP_05919769.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
dagmatis ATCC 43325]
gi|260632874|gb|EEX51043.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
dagmatis ATCC 43325]
Length = 184
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 9 RWYVLQAFSGFEGRVATTLREYIKLHHMEEQFGEVLVPTEEVVENVAGKRRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H ++ P+V+GF+G T + P+P++ E + I+N+++ + ++P
Sbjct: 69 YVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRKE 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 129 FQPGEEVRVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181
>gi|126209181|ref|YP_001054406.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae L20]
gi|165977153|ref|YP_001652746.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|126097973|gb|ABN74801.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877254|gb|ABY70302.1| transcription antitermination protein [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 176
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFPG
Sbjct: 2 RWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ E + I+N+V+ ++P
Sbjct: 62 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRKE 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 122 FQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 174
>gi|332169100|gb|AEE18355.1| NusG antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
Length = 184
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V+ S E K I +SR L+ + E+ +P+E+V+ +R G+KVN ER +F
Sbjct: 7 TKQWYVVRAVSGQENKVKAYIEQEISRLNLEDSIEEVLVPTEKVIQIRNGKKVNKERVYF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPV 118
PGY+++KA + ++ H IK VIGFLG G +P P+ SE+ ++ +V E AV++
Sbjct: 67 PGYIMVKANLGGEIPHIIKSINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVKQDS 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F +GE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 ISIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184
>gi|322434556|ref|YP_004216768.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9]
gi|321162283|gb|ADW67988.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9]
Length = 226
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 116/173 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R+ L + + I IP+E V +R G+K ER F PG
Sbjct: 51 KWYIIHAYSGFERKVRESLESRIHAYNLQNRIGRIMIPTEPVTELRNGKKYTIERVFLPG 110
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + + ++H IK+TP+V GFLGTG++P +++ E+ I+ + + + +P + F
Sbjct: 111 YVLVEMELDNDLWHVIKNTPRVTGFLGTGDSPVALSEQEVSSILFRTDVSKDKPSMKIKF 170
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V +++GPFA+F+G+V +++E+K + V V IFGR TPVE+ +++V+K+
Sbjct: 171 AKGEQVRINEGPFANFSGVVDDLNEDKQTLKVMVSIFGRSTPVEIEFSKVDKM 223
>gi|242278647|ref|YP_002990776.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638]
gi|242121541|gb|ACS79237.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638]
Length = 186
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E++ VE + R+G D+ L+ E+ +P+E+VV + KG K S R+F+P
Sbjct: 14 RWYIVHTYSGFEQR-VEQTVREMMRTGQDNGLIEEVVVPTEKVVELVKGEKRTSTRKFYP 72
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV+IK +M D+ +H I+ P+V GF+G P+P+ DSE I++ +E ++P
Sbjct: 73 GYVMIKMIMEDESWHLIQSIPRVTGFIGGKNRPTPMRDSEAAKILSLMEDRQEQPRPKFN 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V DGPF+ FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 133 FDRGDEVRVIDGPFSGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 185
>gi|148244883|ref|YP_001219577.1| transcription antitermination protein NusG [Candidatus
Vesicomyosocius okutanii HA]
gi|146326710|dbj|BAF61853.1| transcription antitermination protein NusG [Candidatus
Vesicomyosocius okutanii HA]
Length = 177
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+ S E K +I R GL+ LV E+ +P+E+VV ++ G+K +ER+F
Sbjct: 1 MSKRWYVFHARSGFESKVKIAIEESTIREGLEDLVGEVLVPTEQVVELKDGQKKMAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+L+ +T+ + +K+T VIGF+G + PSP+T E++ I+ +V+ +P
Sbjct: 61 FPGYMLVNMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKILMRVQEGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V ++ GE + V DGPF FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK
Sbjct: 121 KVAYQPGEEILVIDGPFNEFNGLVEAVDYEKNLLKVEVLIFGRSTSVELEFSQVEK 176
>gi|299137913|ref|ZP_07031093.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8]
gi|298599843|gb|EFI56001.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8]
Length = 217
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 114/172 (66%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R++ L+ V I IP+E +R G+K +R F PG
Sbjct: 43 KWYIIHAYSGFERKVKESLQSRVAAYHLEDRVGRIEIPTEPTTELRNGKKYTIDRVFLPG 102
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV ++ + + ++H +K+TP+V GFL TG+ P+ ++++E+ ++N+ +A ++P + F
Sbjct: 103 YVFVEMALDNDLWHVVKNTPRVTGFLQTGDQPNALSEAEVNAMLNRSDATKEKPKLKMKF 162
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GE+V +++GPFA+FNG V +++E+K + V V IFGR TP E++++ VEK
Sbjct: 163 SKGEQVRITEGPFANFNGAVDDINEDKQTLKVMVSIFGRPTPTEVSFSNVEK 214
>gi|254495698|ref|ZP_05108615.1| transcription antitermination protein NusG [Legionella drancourtii
LLAP12]
gi|254355077|gb|EET13695.1| transcription antitermination protein NusG [Legionella drancourtii
LLAP12]
Length = 181
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FFPG
Sbjct: 8 QWYVVHAYSGYENFVMREITSRAVHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D+ +H I+ P+V+GF+G T + P+P+TD E IM +VE V +P V
Sbjct: 68 YVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPKVL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 180
>gi|256830550|ref|YP_003159278.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028]
gi|256579726|gb|ACU90862.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028]
Length = 180
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 107/172 (62%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E++ ++I + LV E+ +P+E+VV + KG+K S R+F+PG
Sbjct: 8 RWYIIHTYSGFEQRVEQTIKEMIRTGQAKGLVEEVIVPTEKVVELIKGQKRTSTRKFYPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y ++K V TD +H I+ PKV GF+G P P+TD E + I+ +E ++P F
Sbjct: 68 YAMVKMVFTDDSWHMIQSIPKVTGFIGGKSRPVPLTDKEAQRILATIETRKEQPRPKFHF 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V DGPFA+FN V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 128 ERGDDVRVIDGPFANFNATVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 179
>gi|149278895|ref|ZP_01885030.1| putative transcription antitermination protein [Pedobacter sp.
BAL39]
gi|149230514|gb|EDM35898.1| putative transcription antitermination protein [Pedobacter sp.
BAL39]
Length = 180
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR G HLV ++ IP E+ +++G+K+ ER F+PG
Sbjct: 6 KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKEGKKIAKERNFYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVLI+A + ++ H IK+ VIGFLG G NP P+ +E+ I+ +V E + Q ++
Sbjct: 66 YVLIEANLDGELEHIIKNVNSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE + V DGPF F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 AYYVGENIKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179
>gi|157803322|ref|YP_001491871.1| transcription antitermination protein NusG [Rickettsia canadensis
str. McKiel]
gi|157784585|gb|ABV73086.1| transcription antitermination protein NusG [Rickettsia canadensis
str. McKiel]
Length = 192
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ P V GFLG+ P +T+ EI++I N +EA + +S +
Sbjct: 79 YLLIKMNMTDKSWHFVKNIPGVTGFLGSKTMPKALTEGEIQNIFNNLEAEAKEAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL ++QV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVSIFGKATPIELNFSQVKK 190
>gi|15839227|ref|NP_299915.1| transcription antitermination protein NusG [Xylella fastidiosa
9a5c]
gi|71275252|ref|ZP_00651539.1| transcription antitermination protein NusG [Xylella fastidiosa
Dixon]
gi|71899980|ref|ZP_00682126.1| transcription antitermination protein NusG [Xylella fastidiosa
Ann-1]
gi|170731251|ref|YP_001776684.1| transcription antitermination protein NusG [Xylella fastidiosa M12]
gi|18203340|sp|Q9PA81|NUSG_XYLFA RecName: Full=Transcription antitermination protein nusG
gi|9107869|gb|AAF85435.1|AE004071_3 transcription antitermination factor [Xylella fastidiosa 9a5c]
gi|71164061|gb|EAO13776.1| transcription antitermination protein NusG [Xylella fastidiosa
Dixon]
gi|71730267|gb|EAO32352.1| transcription antitermination protein NusG [Xylella fastidiosa
Ann-1]
gi|167966044|gb|ACA13054.1| transcription antitermination factor [Xylella fastidiosa M12]
Length = 185
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+SR + ++ +P+E VV +R G+K SE +FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVLI+ + ++ +H +K+TPKV+GF+G T + P P++ E + I+ +V+
Sbjct: 63 YVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADAILRRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
++P V FE G+ V V DGPF F+G+V+ V+ EK+R+ V V+IFGR TPV+L + QV
Sbjct: 123 AEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLEFGQV 182
Query: 174 EK 175
+K
Sbjct: 183 QK 184
>gi|163755831|ref|ZP_02162949.1| elongation factor Tu [Kordia algicida OT-1]
gi|161324352|gb|EDP95683.1| elongation factor Tu [Kordia algicida OT-1]
Length = 183
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 114/176 (64%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I ++R GL+ V E+ +P+E+V+ +R G+K+N ER +FPG
Sbjct: 8 KWYVVRAVSGQENKVKAYIESEITRLGLEDYVEEVLVPTEKVIQIRNGKKINKERVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y++IKA + +V H IK VIGFLG G +P P+ SE+ ++ +V E +V+
Sbjct: 68 YIMIKANIAGEVTHVIKSVTNVIGFLGEVKGGDPVPLRQSEVNRMLGKVDELSVKTDNVV 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 128 IPFTLGETVKVIDGPFNGFNGSVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183
>gi|54296353|ref|YP_122722.1| transcription antitermination protein NusG [Legionella pneumophila
str. Paris]
gi|148361065|ref|YP_001252272.1| transcription antitermination protein NusG [Legionella pneumophila
str. Corby]
gi|296105866|ref|YP_003617566.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99
Alcoy]
gi|53750138|emb|CAH11530.1| transcription antitermination protein NusG [Legionella pneumophila
str. Paris]
gi|148282838|gb|ABQ56926.1| transcription antitermination protein NusG [Legionella pneumophila
str. Corby]
gi|295647767|gb|ADG23614.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99
Alcoy]
Length = 182
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E + I R L+ + E+ +PSE VV +R G+K S R+FFPG
Sbjct: 9 QWYVVHAYSGYENFVMREITSRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D+ +H ++ P+V+GF+G T + P+P++D E + IM +VE V +P +
Sbjct: 69 YVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPKIL 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 FEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181
>gi|86131812|ref|ZP_01050409.1| transcriptional antitermination factor NusG [Dokdonia donghaensis
MED134]
gi|85817634|gb|EAQ38808.1| transcriptional antitermination factor NusG [Dokdonia donghaensis
MED134]
Length = 184
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V+ S E K I +SR L+ + E+ +P+E+V+ +R G+KVN ER +F
Sbjct: 7 TKQWYVVRAVSGQENKVKAYIEQEISRLSLEDNIEEVLVPTEKVIQIRNGKKVNKERVYF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPV 118
PGY+++KA + ++ H IK VIGFLG G +P P+ +E+ ++ +V E AV++
Sbjct: 67 PGYIMVKANLAGEIPHIIKSINGVIGFLGEVKGGDPVPLRKAEVNRMLGKVDELAVKQDS 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 VAIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184
>gi|317123109|ref|YP_004103112.1| transcription antitermination protein nusG [Thermaerobacter
marianensis DSM 12885]
gi|315593089|gb|ADU52385.1| transcription antitermination protein nusG [Thermaerobacter
marianensis DSM 12885]
Length = 234
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K +I R+ G+ + E+ +P+E + V+ G++ +R+ FPG
Sbjct: 64 QWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFPG 123
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +MTD ++ +++TP V GF+G G P+P+ SE+E I Q+ RP+ + F
Sbjct: 124 YVLVEMIMTDDSWYVVRNTPGVTGFVGAGNKPTPLLPSEVEQIRRQMGMDEPRPL--IRF 181
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V+DGPF F G V+++D +K ++ V V +FGR TPVEL + QVEKI
Sbjct: 182 EVGESVKVADGPFEGFIGQVESIDHQKGKLRVLVSMFGRETPVELDFTQVEKI 234
>gi|34112954|gb|AAQ62399.1| predicted transcription antiterminator NusG [uncultured marine
gamma proteobacterium EBAC31A08]
gi|37912939|gb|AAR05271.1| predicted transcription antiterminator NusG [uncultured marine
gamma proteobacterium EB000-45B06]
gi|40063166|gb|AAR38003.1| transcription antitermination protein NusG [uncultured marine
bacterium 562]
Length = 175
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q YS E+K ++ ++ +GL EI IP+E++V ++ G K +ER+FFPGY
Sbjct: 3 WYVIQAYSGYEQKVKIALEEKIELNGLSEKFGEILIPTEQIVELKGGTKKTTERKFFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+LI+ ++ D + ++ TP+V GF+G T + P P+++ ++ I+N++E P +
Sbjct: 63 ILIEMLLEDDSWQLVQSTPRVSGFVGGTKDRPLPISEDDVNSIINRIEVGEDAPAPKTIY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V DGPF FNG+V+NVD E++ V V V I GR TPV+L + Q+EK
Sbjct: 123 EPGEVVRVCDGPFNDFNGVVENVDYERNMVKVAVQILGRATPVDLEFIQIEK 174
>gi|212213263|ref|YP_002304199.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212]
gi|212218059|ref|YP_002304846.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154]
gi|215918918|ref|NP_819269.2| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 493]
gi|206583803|gb|AAO89783.2| transcription antitermination protein [Coxiella burnetii RSA 493]
gi|212011673|gb|ACJ19054.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212]
gi|212012321|gb|ACJ19701.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154]
Length = 188
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFPG
Sbjct: 22 RWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V F
Sbjct: 82 YVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVLF 135
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 136 EPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187
>gi|209364194|ref|YP_001425195.2| transcription antitermination protein [Coxiella burnetii Dugway
5J108-111]
gi|207082127|gb|ABS78422.2| transcription antitermination protein [Coxiella burnetii Dugway
5J108-111]
Length = 188
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFPG
Sbjct: 22 RWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V F
Sbjct: 82 YVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVLF 135
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 136 EPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187
>gi|52840562|ref|YP_094361.1| transcription antitermination protein NusG [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52627673|gb|AAU26414.1| transcription antitermination protein NusG [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 184
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FFPG
Sbjct: 11 QWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D+ +H ++ P+V+GF+G T + P+P++D E + IM +VE V +P +
Sbjct: 71 YVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPKIL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 131 FEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 183
>gi|52424260|ref|YP_087397.1| transcription antitermination protein NusG [Mannheimia
succiniciproducens MBEL55E]
gi|52306312|gb|AAU36812.1| NusG protein [Mannheimia succiniciproducens MBEL55E]
Length = 184
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 9 RWYVLQAFSGFEGRVATTLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H ++ P+V+GF+G T + P P++ E + I+N+VE +P
Sbjct: 69 YVLVEMEMNDDTWHLVRSVPRVMGFIGGTPDRPLPISKREADLILNRVEENADKPRPKNT 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 129 FQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181
>gi|54293309|ref|YP_125724.1| transcription antitermination protein NusG [Legionella pneumophila
str. Lens]
gi|53753141|emb|CAH14588.1| transcription antitermination protein NusG [Legionella pneumophila
str. Lens]
Length = 182
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FFPG
Sbjct: 9 QWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D+ +H ++ P+V+GF+G T + P+P++D E + IM +VE V +P +
Sbjct: 69 YVLVHMVMDDQTWHMVRAIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPKIL 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 FEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181
>gi|307609126|emb|CBW98571.1| transcription antitermination protein NusG [Legionella pneumophila
130b]
Length = 182
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FFPG
Sbjct: 9 QWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ VM D+ +H ++ P+V+GF+G T + P+P++D E + IM +VE V +P +
Sbjct: 69 YVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPKIL 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 FEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181
>gi|153208145|ref|ZP_01946573.1| transcription termination/antitermination factor NusG [Coxiella
burnetii 'MSU Goat Q177']
gi|161830723|ref|YP_001596170.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 331]
gi|165918637|ref|ZP_02218723.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 334]
gi|120576158|gb|EAX32782.1| transcription termination/antitermination factor NusG [Coxiella
burnetii 'MSU Goat Q177']
gi|161762590|gb|ABX78232.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 331]
gi|165917665|gb|EDR36269.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 334]
Length = 173
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFPG
Sbjct: 7 RWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V F
Sbjct: 67 YVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVLF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 121 EPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 172
>gi|42524388|ref|NP_969768.1| transcription antitermination protein [Bdellovibrio bacteriovorus
HD100]
gi|39576597|emb|CAE80761.1| transcription antitermination protein [Bdellovibrio bacteriovorus
HD100]
Length = 177
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 112/176 (63%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV V ++CE A ++I ++ S ++ EI IP+E VV + KG+K R+F
Sbjct: 1 MEKKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+ ++ + D+ +H ++++ KV GF+ GT P V ++E+ + Q+ ++P
Sbjct: 61 FPGYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F VGE V V DGPF++F G V+ ++E+K+++ V V IFGR TPVEL Y QVEK
Sbjct: 121 KVKFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176
>gi|28199872|ref|NP_780186.1| transcription antitermination protein NusG [Xylella fastidiosa
Temecula1]
gi|182682624|ref|YP_001830784.1| transcription antitermination protein NusG [Xylella fastidiosa M23]
gi|32129806|sp|Q87A27|NUSG_XYLFT RecName: Full=Transcription antitermination protein nusG
gi|28057993|gb|AAO29835.1| transcription antitermination factor [Xylella fastidiosa Temecula1]
gi|182632734|gb|ACB93510.1| NusG antitermination factor [Xylella fastidiosa M23]
gi|307578905|gb|ADN62874.1| transcription antitermination protein NusG [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 185
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 10/182 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +++ R+SR + ++ +P+E VV +R G+K SE +FFPG
Sbjct: 3 RWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFPG 62
Query: 64 YVLIK---------AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAA 113
YVLI+ + ++ +H +K+TPKV+GF+G T + P P++ E + I+ +V+
Sbjct: 63 YVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQDG 122
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
++P V FE G+ V V DGPF F+G+V+ V+ EK+R+ V V+IFGR TPV+L + QV
Sbjct: 123 AEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQV 182
Query: 174 EK 175
+K
Sbjct: 183 QK 184
>gi|322513223|ref|ZP_08066349.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinobacillus ureae ATCC 25976]
gi|322120999|gb|EFX92840.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinobacillus ureae ATCC 25976]
Length = 187
Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FFPG
Sbjct: 13 RWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+P++ E E I+N+V+ ++P
Sbjct: 73 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREAERILNRVQETAEKPRHRNE 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 133 YQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|78358031|ref|YP_389480.1| transcription antitermination protein nusG [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78220436|gb|ABB39785.1| transcription antitermination protein nusG [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 184
Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS E++ ++I + L+ E+ +P+E+V+ + KG K S R+F+PG
Sbjct: 12 RWYIVHTYSGFEQRVEQTIRQMIRTGEAQDLIEEVVVPTEKVIELVKGEKRTSTRKFYPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+++K +MTD +H +++ +V GF+G P+P+ DSE E I+ +E+ ++P F
Sbjct: 72 YIMVKMIMTDFSWHLVQNINRVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFNF 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 132 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVNK 183
>gi|15604011|ref|NP_220526.1| transcription antitermination protein NusG [Rickettsia prowazekii
str. Madrid E]
gi|1709419|sp|P50056|NUSG_RICPR RecName: Full=Transcription antitermination protein nusG
gi|987968|emb|CAA90886.1| transcription antitermination factor NusG [Rickettsia prowazekii]
gi|3860702|emb|CAA14603.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (nusG) [Rickettsia
prowazekii]
gi|292571729|gb|ADE29644.1| Transcription antitermination protein NusG [Rickettsia prowazekii
Rp22]
Length = 192
Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E I ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNIPGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+ ++R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEIVTVTDGPFETFMGTVEAIDKARNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|87122751|ref|ZP_01078625.1| transcription antitermination protein NusG [Marinomonas sp. MED121]
gi|86161979|gb|EAQ63270.1| transcription antitermination protein NusG [Marinomonas sp. MED121]
Length = 149
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
G++ EI +P+E VV +R G+K SER+F+PGYVL++ M D +H +K T +V+GF+
Sbjct: 2 GMEDYFGEILVPTEEVVEIRDGKKRKSERKFYPGYVLVQMDMNDDSWHLVKGTSRVLGFI 61
Query: 90 G-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
G T + PSP+T+ E + I+ +V P FEVGE V V DGPFA FNG+V+ D
Sbjct: 62 GGTADKPSPITEREADAILQRVSDRADNPRPKTLFEVGEVVRVIDGPFADFNGVVEEADY 121
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
+KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 122 DKSRIKVAVLIFGRSTPVDLEFSQVEK 148
>gi|51473334|ref|YP_067091.1| transcription antitermination protein NusG [Rickettsia typhi str.
Wilmington]
gi|81692319|sp|Q68XN3|NUSG_RICTY RecName: Full=Transcription antitermination protein nusG
gi|51459646|gb|AAU03609.1| transcription antitermination protein NusG (N utilization substance
protein G) [Rickettsia typhi str. Wilmington]
Length = 192
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V S EK+ E I ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 QWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPS 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S +
Sbjct: 79 YILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKLY 138
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V V+DGPF +F G V+ +D+E++R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 EVGEVVTVTDGPFETFMGTVEEIDKERNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|315635152|ref|ZP_07890430.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Aggregatibacter segnis ATCC 33393]
gi|315476114|gb|EFU66868.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Aggregatibacter segnis ATCC 33393]
Length = 183
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FPG
Sbjct: 9 RWYVLQAFSGFEARVATTLREYIKLHNMEEQFGEVLVPTEEVVENVAGKRRKSERKYFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H ++ P+V+GF+G T + P+P+++ E + I+N++E +P
Sbjct: 69 YVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRTT 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPF FNG V+ +D EK R+ V V IFGR TPVEL + QVEK
Sbjct: 129 FQPGEEVRVTEGPFMDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181
>gi|301059238|ref|ZP_07200175.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
gi|300446673|gb|EFK10501.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
Length = 176
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 109/176 (61%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YS E + +S+ R+ G I +P+E++V ++KG+K + R+F
Sbjct: 1 MELKWYIVHTYSGFEDRVKKSLEERIESFGQQDYFGRILVPTEQIVELKKGQKKTTSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + + +HT+++T KV GF+G NP+PV+D E E ++ Q+E V RP +
Sbjct: 61 YPGYILVEMHINQETWHTVRNTAKVTGFVGGEVNPTPVSDEEAERVIRQMEEGVSRPKAR 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPF +F G V V +K ++ V + IFGR TPVEL + QV I
Sbjct: 121 YNFEEGDEVRVIDGPFTNFQGTVSEVKPDKEKLRVLITIFGRPTPVELDFIQVTTI 176
>gi|152977734|ref|YP_001343363.1| transcription antitermination protein NusG [Actinobacillus
succinogenes 130Z]
gi|150839457|gb|ABR73428.1| NusG antitermination factor [Actinobacillus succinogenes 130Z]
Length = 185
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFPG
Sbjct: 10 RWYVLQAFSGFEGRVAATLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D + ++ P+V+GF+G T + P P++ E + I+N+VE +P
Sbjct: 70 YVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPLPISQREADAILNRVEQNADKPRPKNV 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 130 FQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 182
>gi|313903164|ref|ZP_07836558.1| transcription antitermination protein nusG [Thermaerobacter
subterraneus DSM 13965]
gi|313466666|gb|EFR62186.1| transcription antitermination protein nusG [Thermaerobacter
subterraneus DSM 13965]
Length = 236
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K +I R+ G+ + E+ +P+E + V+ G++ +R+ FPG
Sbjct: 66 QWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFPG 125
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ +MTD ++ +++TP V GF+G G P+P+ SE+E I Q+ RP+ + F
Sbjct: 126 YVLVDMIMTDDSWYVVRNTPGVTGFVGAGSKPTPLLPSEVEQIRRQMGVDEPRPL--IRF 183
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V+DGPF F G V+ +D +K ++ V V +FGR TPVEL + QVEK+
Sbjct: 184 EVGESVKVADGPFEGFIGQVETIDHQKGKLRVLVSMFGRETPVELDFTQVEKL 236
>gi|113460339|ref|YP_718400.1| transcription antitermination protein NusG [Haemophilus somnus
129PT]
gi|112822382|gb|ABI24471.1| transcription antitermination protein nusG [Haemophilus somnus
129PT]
Length = 184
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FPG
Sbjct: 9 RWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D + ++ P+V+GF+G T + P+P++ E E I+N+V+ +P
Sbjct: 69 YVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRKE 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 FQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181
>gi|170718763|ref|YP_001783416.1| transcription antitermination protein NusG [Haemophilus somnus
2336]
gi|168826892|gb|ACA32263.1| NusG antitermination factor [Haemophilus somnus 2336]
Length = 184
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FPG
Sbjct: 9 RWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D + ++ P+V+GF+G T + P+P++ E E I+N+V+ +P
Sbjct: 69 YVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRKE 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 FQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181
>gi|262197203|ref|YP_003268412.1| NusG antitermination factor [Haliangium ochraceum DSM 14365]
gi|262080550|gb|ACY16519.1| NusG antitermination factor [Haliangium ochraceum DSM 14365]
Length = 189
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 106/172 (61%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V ++ E++ E++ R G + EI +P+ V+ V KG++ S ++FFPG
Sbjct: 18 KWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ ++ TD VYH I++TPKV GF+G G P PV +SEI I N + +P V F
Sbjct: 78 YIFVQMEFTDSVYHLIRNTPKVTGFVG-GNTPQPVPESEISVIHNTMSDNHSKPRPKVMF 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V+DGPFASF V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 137 EQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEK 188
>gi|261866778|ref|YP_003254700.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|293391591|ref|ZP_06635925.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|261412110|gb|ACX81481.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|290952125|gb|EFE02244.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D7S-1]
Length = 183
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FPG
Sbjct: 9 RWYVLQAFSGFEARVATTLREYIKLHNMEDQFGEVLVPTEEVVENVAGKRRKSERKYFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H ++ P+V+GF+G T + P+P++ E + I+N++E + +P
Sbjct: 69 YVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISSREADIILNRLEQSNDKPKPRTT 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPF FNG V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 129 FQPGEEVRVTEGPFIDFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 181
>gi|319942159|ref|ZP_08016476.1| transcription antitermination protein nusG [Sutterella
wadsworthensis 3_1_45B]
gi|319804294|gb|EFW01183.1| transcription antitermination protein nusG [Sutterella
wadsworthensis 3_1_45B]
Length = 179
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY + VYS+ EK ++ R+++SG L E+ +P+E+V VR GRKV SERR +PG
Sbjct: 8 WYTLHVYSSMEKSVKNALEERIAQSGELRSSFGEVLLPTEKVHEVRNGRKVTSERRMYPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV I+ M D +H + TP++I FLG NP P++ +E+ +I++ E + +P + F
Sbjct: 68 YVFIQMEMNDATWHLVNSTPRIIEFLGNN-NPVPLSPTEVANILSAAENSSDKPRPKIEF 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V + G F F G V VD +KSR++V V IFGR T V+L +N+VEKI
Sbjct: 127 EIGEMVRIKSGAFKDFTGRVDGVDYDKSRLNVFVSIFGRDTLVDLGFNEVEKI 179
>gi|46581327|ref|YP_012135.1| transcription antitermination protein NusG [Desulfovibrio vulgaris
str. Hildenborough]
gi|120601494|ref|YP_965894.1| NusG antitermination factor [Desulfovibrio vulgaris DP4]
gi|46450749|gb|AAS97395.1| transcription antitermination protein NusG [Desulfovibrio vulgaris
str. Hildenborough]
gi|120561723|gb|ABM27467.1| transcription antitermination protein nusG [Desulfovibrio vulgaris
DP4]
gi|311234987|gb|ADP87841.1| NusG antitermination factor [Desulfovibrio vulgaris RCH1]
Length = 183
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 107/172 (62%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+PG
Sbjct: 11 RWYIVHTYSGFENRVEQTIREMIRTGQSQDEIVEVVVPTEKVIELVKGEKRTSTRKFYPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV++K MTD +H ++ PKV GF+G P+P+ DSE E I+ +E+ ++P F
Sbjct: 71 YVMVKMFMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFNF 130
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 131 DRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 182
>gi|251793503|ref|YP_003008232.1| transcription termination/antitermination factor NusG
[Aggregatibacter aphrophilus NJ8700]
gi|247534899|gb|ACS98145.1| transcription termination/antitermination factor NusG
[Aggregatibacter aphrophilus NJ8700]
Length = 183
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FPG
Sbjct: 9 RWYVLQAFSGFEARVATTLREYIKLHQMEEQFGEVLVPTEEVVENVAGKRRKSERKYFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H ++ P+V+GF+G T + P+P+++ E + I+N++E +P
Sbjct: 69 YVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRTT 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPF FNG V+ +D EK R+ V V IFGR TPVEL + QVEK
Sbjct: 129 FQPGEEVRVTEGPFIDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181
>gi|94987376|ref|YP_595309.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00]
gi|94731625|emb|CAJ54988.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00]
Length = 194
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 111/174 (63%), Gaps = 3/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGR-KVNSERRFF 61
RWYIV YS E++ VE+ + RSG D L+ E+ +P+ERVV + KG K + R+F+
Sbjct: 21 RWYIVHTYSGFEQR-VEATIKEMMRSGQDEGLIHEVVLPTERVVELGKGGLKRTTTRKFY 79
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY++++ MTD +H I+ PKV GF+G P+P+ D E I++ +E ++P
Sbjct: 80 PGYIMLRMTMTDYSWHLIQTIPKVTGFVGGKNRPAPMKDEEASKILSLMETRQEQPRPKF 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ + V DGPF FNGIV++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 140 SFERGDEIRVIDGPFGGFNGIVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 193
>gi|197122681|ref|YP_002134632.1| NusG antitermination factor [Anaeromyxobacter sp. K]
gi|220917464|ref|YP_002492768.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
gi|196172530|gb|ACG73503.1| NusG antitermination factor [Anaeromyxobacter sp. K]
gi|219955318|gb|ACL65702.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
Length = 179
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLDERIRQHSLQDAFGEVLIPMEVVQEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS---PVTDSEIEHIMNQVEAAVQRP 117
FPGY+L+ M+ + +H +K TPKV GF+G + P V+D E++ + Q+ +P
Sbjct: 61 FPGYILVNMEMSLQTWHLVKGTPKVTGFVGNAKTPEQVPAVSDVEVQRLTTQISEGSLKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G+ V V+DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178
>gi|297179994|gb|ADI16219.1| transcription antiterminator [uncultured bacterium HF0010_16H03]
Length = 175
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q YS E+K ++ ++ + L EI IP+E++V ++ G K +ER+FFPGY
Sbjct: 3 WYVIQAYSGYEQKVKIALEEKIELNNLSDKFGEILIPTEQIVELKGGSKKTTERKFFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+LI+ ++ D + ++ T +V GF+G T + P P+++ ++ +I+N++E P +
Sbjct: 63 ILIQMLLEDDSWQLVQSTARVSGFVGGTKDRPLPISEDDVNNIINRIEVGEDAPAPKTIY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V DGPF FNG+V+NVD E++ V V V I GR TPV+L + Q+EK
Sbjct: 123 EPGEVVRVCDGPFNDFNGVVENVDYERNMVKVSVQILGRATPVDLEFMQIEK 174
>gi|149372370|ref|ZP_01891558.1| transcription anti-termination protein [unidentified eubacterium
SCB49]
gi|149354760|gb|EDM43323.1| transcription anti-termination protein [unidentified eubacterium
SCB49]
Length = 184
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V+ S E K + ++R L + +I +P+E+V+ VR G+KV ER FF
Sbjct: 7 TKKWYVVRSVSGQENKIKSYLESEITRLNLADYIEQILVPTEKVIQVRNGKKVQKERVFF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPV 118
PGY++++A + ++ H IK VIGFLG G +P P+ +E+ ++ +V E AVQ
Sbjct: 67 PGYIMVQASLAGEIPHIIKSINGVIGFLGETKGGDPVPLRQAEVNRMLGKVDELAVQDDS 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ + +GE V V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 VNIPYTIGETVKVVDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184
>gi|260063562|ref|YP_003196642.1| putative transcription antitermination protein [Robiginitalea
biformata HTCC2501]
gi|88783006|gb|EAR14180.1| putative transcription antitermination protein [Robiginitalea
biformata HTCC2501]
Length = 183
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I + R G + E+ +P+E+VV +R G+K+N ER +
Sbjct: 5 LEKKWYVVRAVSGQENKIKGYIESEVERHGFGDNLEEVLVPTEKVVQIRNGKKINKERVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRP 117
FPGY+++KA +T ++ H I+ VIGFLG G +P P+ SE+ ++ +V E A+
Sbjct: 65 FPGYIMVKANLTGEMIHIIRSITNVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAINTD 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 AVAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|312892230|ref|ZP_07751727.1| transcription antitermination protein nusG [Mucilaginibacter
paludis DSM 18603]
gi|311295360|gb|EFQ72532.1| transcription antitermination protein nusG [Mucilaginibacter
paludis DSM 18603]
Length = 180
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I ++R G+ HLV ++ IP E+ +R G+K+ ER FFPG
Sbjct: 6 KWYVVRAISGKEKKVKQYIDAEINRLGISHLVPQVLIPMEKYYQMRDGKKIAKERNFFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVL++A + ++ H IK+ VIGFLG N P+ +E+ I+ +V E + Q +V
Sbjct: 66 YVLMEAALDGELEHIIKNINSVIGFLGDKAGNAIPLRQAEVNRILGKVDEMSEQGETMNV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +GE V V DGPF F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 PYYIGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRRTPLELNYMQVEK 179
>gi|86158012|ref|YP_464797.1| transcription antitermination protein nusG [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774523|gb|ABC81360.1| transcription antitermination protein nusG [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 179
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLDERIRQHALQDSFGEVLIPMEVVQEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS---PVTDSEIEHIMNQVEAAVQRP 117
FPGY+L+ M + +H +K TPKV GF+G + P V+D E++ + Q+ +P
Sbjct: 61 FPGYILVNMEMNLQTWHLVKGTPKVTGFVGNAKTPDQVPAVSDIEVQRLTTQISEGSLKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G+ V V+DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178
>gi|153005087|ref|YP_001379412.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5]
gi|152028660|gb|ABS26428.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5]
Length = 179
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLEERVRQHSLQEQFGEVLIPMEVVQEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS---PVTDSEIEHIMNQVEAAVQRP 117
FPGY+L+ MT +H +K TPKV GF+G + P+ V+D E++ + Q+ +P
Sbjct: 61 FPGYILVNMEMTLDTWHLVKGTPKVTGFVGNAKTPNEVPAVSDVEVQRLTTQISEGSLKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G++V V DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDQVRVIDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178
>gi|86134005|ref|ZP_01052587.1| transcriptional antitermination factor NusG [Polaribacter sp.
MED152]
gi|85820868|gb|EAQ42015.1| transcriptional antitermination factor NusG [Polaribacter sp.
MED152]
Length = 182
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ E K I +SR GL V ++ +P+E+VV +R G+KVN ER +FPG
Sbjct: 7 KWYVVRAIGGQENKVKNYIETEISRVGLSDYVNQVIVPTEKVVQIRNGKKVNRERVYFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y++++A ++ +V H IK VIGFLG G P P+ SE+ ++ +V E +VQ +
Sbjct: 67 YIMVEANLSGEVPHVIKAITGVIGFLGEVKGGEPVPMRKSEVNRMLGKVDELSVQDENIA 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VGE V V DGPF F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 IPYNVGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 182
>gi|295133023|ref|YP_003583699.1| transcription antitermination protein [Zunongwangia profunda
SM-A87]
gi|294981038|gb|ADF51503.1| transcription antitermination protein [Zunongwangia profunda
SM-A87]
Length = 183
Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K + I +S G++ V ++ +P+E+V+ +R G+K+N ER +FPG
Sbjct: 8 KWYVVRAVSGQENKVKDYIEREISHMGMEDWVDQVLVPTEKVIQIRNGKKINKERVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y++I+A + ++ H IK VIGFLG G +P P+ SE+ ++ +V E +V+ +
Sbjct: 68 YIMIQANLGGEIPHIIKGINGVIGFLGETKGGDPVPLRQSEVNRMLGKVDELSVKTDNVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 128 IPFTLGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183
>gi|167950492|ref|ZP_02537566.1| NusG antitermination factor [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 148
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 101/141 (71%), Gaps = 2/141 (1%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENP 95
E+ +P+E VV +R G++ SER+FFPGYVL++ MTD+ +H +KD PKV+GF+G +P
Sbjct: 7 EVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEMTDETWHLVKDVPKVLGFIGGYRRSP 66
Query: 96 S-PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P+TD E + I+ +V+ V++P V FE GE V V DGPF F+G+V+ VD EKSR+
Sbjct: 67 GRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVVRVVDGPFNDFSGVVEEVDYEKSRLK 126
Query: 155 VEVVIFGRVTPVELAYNQVEK 175
V V+IFGR TPV+L + QVEK
Sbjct: 127 VSVLIFGRSTPVDLEFGQVEK 147
>gi|298206601|ref|YP_003714780.1| putative transcription antitermination protein [Croceibacter
atlanticus HTCC2559]
gi|83849231|gb|EAP87099.1| putative transcription antitermination protein [Croceibacter
atlanticus HTCC2559]
Length = 183
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K + I +S GL+ V +I +P+E+V+ +R G+KVN ER +FPG
Sbjct: 8 KWYVVRSVSGQENKIKDYIEREISHHGLEDFVDQILVPTEKVIQIRNGKKVNKERVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y++++A ++ ++ H IK VIGFLG G +P P+ SE+ ++ +V E +V +
Sbjct: 68 YIMVQANLSGEIPHIIKGINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELSVAADNVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VGE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 128 IPYTVGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|260893763|ref|YP_003239860.1| NusG antitermination factor [Ammonifex degensii KC4]
gi|260865904|gb|ACX53010.1| NusG antitermination factor [Ammonifex degensii KC4]
Length = 175
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 112/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K ++ R++ ++ + I IP E V+ ++ G+K ++RR FPG
Sbjct: 5 RWYVIHTYSGYENKVKANLEKRIASMNMEDKIFNIVIPEEDVIEIKDGKKKATKRRIFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L++ ++TD+ ++ +++TP V GF+G+G P P++D E+E I+ + + P +
Sbjct: 65 YILVEMILTDESWYVVRNTPGVTGFVGSGNKPVPLSDEEVEEILKRTRG--EAPRFRIDI 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V V+ GPF +F G+V+ V+ EK+++ V + +FGR TP+EL Y QVEKI
Sbjct: 123 SPGEKVRVTSGPFQNFIGVVEEVNTEKAKLRVMISMFGRETPIELDYTQVEKI 175
>gi|45644660|gb|AAS73048.1| predicted transcription antiterminator NusG [uncultured marine
gamma proteobacterium EBAC20E09]
Length = 175
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q YS E+K ++ R+ + L EI IP+E++V ++ G K +ER+FFPGY
Sbjct: 3 WYVIQAYSGYEQKVKAALEERIMLNNLSEKFGEILIPTEQIVELKAGTKKTTERKFFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+LI+ + D + ++ TP+V GF+G T + P P+++ +++ I+N++E P +
Sbjct: 63 ILIQMNLEDDSWQLVQSTPRVSGFVGGTRDKPLPISEDDVKSIINRIEVGEDAPAPKTIY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE + V DGPF FNG+V+ VD E++ V V I GR TPVEL + Q+EK
Sbjct: 123 EPGEVIRVCDGPFNDFNGVVEEVDYERNIAKVSVQILGRATPVELDFIQIEK 174
>gi|86140286|ref|ZP_01058845.1| putative transcription antitermination protein [Leeuwenhoekiella
blandensis MED217]
gi|85832228|gb|EAQ50677.1| putative transcription antitermination protein [Leeuwenhoekiella
blandensis MED217]
Length = 184
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY+V+ S E K I +SR L+ + ++ +P+E+VV +R G+K+N ER +F
Sbjct: 7 TKDWYVVRAVSGQENKVKGYIEQEISRFNLEDYIEQVLVPTEKVVQIRNGKKINKERVYF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPV 118
PGY++I A + +V H IK VIGFLG G +P P+ SE+ ++ +V E AV+
Sbjct: 67 PGYIMIHANLGGEVTHMIKSINGVIGFLGETKGGDPVPLRTSEVNRMLGKVDELAVKTDN 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 VAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184
>gi|330721677|gb|EGG99685.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC2047]
Length = 159
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ ++ E+ +P+E VV +R G+K SER+F+PGYVL+ M D +H + TP+
Sbjct: 7 RIKLHDMEDKFGEVLVPTEEVVEMRGGQKRKSERKFYPGYVLVNMEMDDASWHLVNSTPR 66
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P+T+ E + I+ +VE V++P FE GE V V DGPFA F+G+V
Sbjct: 67 VMGFIGGTADKPAPITEREADAILQRVEQGVEQPRPKTLFEPGEMVRVIDGPFADFSGVV 126
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V+ K+R+ V V IFGR TPVEL ++QVEK
Sbjct: 127 EEVNYPKNRLQVAVTIFGRSTPVELGFDQVEK 158
>gi|283851491|ref|ZP_06368771.1| NusG antitermination factor [Desulfovibrio sp. FW1012B]
gi|283573025|gb|EFC21005.1| NusG antitermination factor [Desulfovibrio sp. FW1012B]
Length = 192
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + ++I + R+G D + E+ +P+E+V+ + KG K S R+F+P
Sbjct: 20 RWYIVHTYSGFENRVEQTIR-EMMRTGQDGGSIEEVVVPTEKVIELVKGEKKTSTRKFYP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P
Sbjct: 79 GYVMVKMAMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYH 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 139 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 191
>gi|147676640|ref|YP_001210855.1| transcription antiterminator [Pelotomaculum thermopropionicum SI]
gi|146272737|dbj|BAF58486.1| transcription antiterminator [Pelotomaculum thermopropionicum SI]
Length = 175
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+R+
Sbjct: 1 MEKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ D+E I+ Q+ V+ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQM--GVEEPRTR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F VGE + V GPF +F G ++ ++ EKS+V V + +FGR TPVEL + QVEKI+
Sbjct: 119 VDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKII 175
>gi|326334492|ref|ZP_08200703.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325693261|gb|EGD35189.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 182
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I +SR G V ++ +P+E+V +R G+K+N E+ F
Sbjct: 4 LEKKWYVVRAVSGQENKVKSYIESEISRLGYADYVEQVLVPTEKVPQLRNGKKINVEKVF 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGYV++KA ++ +V H IK+ VIGFLG G P+P+ SE+ ++ V+ +Q V
Sbjct: 64 FPGYVMVKADLSGEVSHIIKNISGVIGFLGETKGGTPTPIRKSEVNRMLGIVD-ELQEKV 122
Query: 119 SSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V +E+GE V V DGPF F G V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 123 ETVLIPYEIGESVKVIDGPFNGFTGNVEKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182
>gi|303247802|ref|ZP_07334071.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ]
gi|302490886|gb|EFL50785.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ]
Length = 187
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + ++I + R+G D + E+ +P+E+V+ + KG K S R+F+P
Sbjct: 15 RWYIVHTYSGFENRVEQTIR-EMMRTGQDGGSIEEVVVPTEKVIELVKGEKRTSTRKFYP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P
Sbjct: 74 GYVMVKMSMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYH 133
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 134 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186
>gi|163787866|ref|ZP_02182313.1| elongation factor Tu [Flavobacteriales bacterium ALC-1]
gi|159877754|gb|EDP71811.1| elongation factor Tu [Flavobacteriales bacterium ALC-1]
Length = 181
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I +SR GL+ V ++ +P+E+V+ +R G+K+N E+ +FPG
Sbjct: 5 KWYVVRAVSGQENKIKTYIENEISRLGLEDFVDQVLVPTEKVIQIRNGKKINKEKVYFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVS- 119
Y++I+A ++ ++ H IK VIGFLG G +P P+ SE+ ++ +V E A++ +
Sbjct: 65 YIMIQANLSGEIPHIIKSITNVIGFLGETKGGDPVPLRQSEVNRMLGKVDELAIEADANV 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F GE V V DGPF F+G ++ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 AIPFTKGETVKVIDGPFNGFDGTIEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 181
>gi|163752685|ref|ZP_02159848.1| transcription antitermination protein NusG [Shewanella benthica
KT99]
gi|161327425|gb|EDP98648.1| transcription antitermination protein NusG [Shewanella benthica
KT99]
Length = 161
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFPG
Sbjct: 10 RWYVVQAFSGYEGRVLKTLNEYIQMYKMEHFFGEILVPTEEVVEMRAGQRRKSERKFFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ + P V
Sbjct: 70 YVLVQMEMNDESWHLVKSVPRVMGFIGGTSDRPAPISDVEADRILQRLQETTESPTHRVM 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
FE GE V V+DGPFA FNG V+ VD EK+RV
Sbjct: 130 FEPGEVVRVTDGPFADFNGTVEEVDYEKNRV 160
>gi|220904896|ref|YP_002480208.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869195|gb|ACL49530.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 190
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 3/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSERRFF 61
RWYIV YS E++ ++I L R+G + L+ E+ +P+E+V+ KG ++ S R+F+
Sbjct: 17 RWYIVHTYSGFEQRVQKTIN-ELRRTGQEQGLIEEVVVPTEKVIEPTKGGQQRTSTRKFY 75
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+++ VMTD +H ++ PKV GF+G P+P+ D E E I++ +E + P
Sbjct: 76 PGYVMVRMVMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDGEAERILSLMETRQETPRPKF 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V +GPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 136 NFDRGDEVRVIEGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFAQVSK 189
>gi|161870928|ref|YP_001600108.1| transcription antitermination protein [Neisseria meningitidis
053442]
gi|161596481|gb|ABX74141.1| transcription antitermination protein [Neisseria meningitidis
053442]
Length = 148
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-P 95
+I +P E+VV +R GRK SER+ +PGYVL++ MTD +H +K TP+V GF+G N P
Sbjct: 7 QILVPVEKVVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRP 66
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
P++ E E I+ QV+ +++P V FEVG++V V++GPFA FNG+V+ V+ E++++ V
Sbjct: 67 MPISQREAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRV 126
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
V IFGR TPVEL ++QVEKI
Sbjct: 127 SVQIFGRETPVELEFSQVEKI 147
>gi|88802462|ref|ZP_01117989.1| putative transcription antitermination protein [Polaribacter
irgensii 23-P]
gi|88781320|gb|EAR12498.1| putative transcription antitermination protein [Polaribacter
irgensii 23-P]
Length = 183
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ E K I ++R GL V+++ +P+E+V+ ++ G+K+N E+ +FPG
Sbjct: 8 KWYVVRAIGGQENKVKAYIETEIARLGLSDFVSQVIVPTEKVIQIKDGKKINKEKVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y++++A ++ +V H IK VIGFLG G P P+ +E+ ++ +V E ++Q +
Sbjct: 68 YIMVEANLSGEVPHVIKGITGVIGFLGEVKGGAPVPMRKAEVNRMLGKVDELSIQDENVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V V DGPF F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 128 IPFDIGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183
>gi|239907757|ref|YP_002954498.1| transcription antitermination protein NusG [Desulfovibrio
magneticus RS-1]
gi|239797623|dbj|BAH76612.1| transcription antitermination protein NusG [Desulfovibrio
magneticus RS-1]
Length = 187
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + VE + R+G D + E+ +P+E+++ + KG K S R+F+P
Sbjct: 15 RWYIVHTYSGFENR-VELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTSTRKFYP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P
Sbjct: 74 GYVMVKMAMDDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEAQKILSLMVSRQEQPRPKYH 133
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 134 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186
>gi|33152872|ref|NP_874225.1| transcription antitermination protein NusG [Haemophilus ducreyi
35000HP]
gi|33149097|gb|AAP96614.1| transcription antitermination protein [Haemophilus ducreyi 35000HP]
Length = 187
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FFPG
Sbjct: 13 RWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H +K P+V+GF+G T + P+ ++ E + I+N+V+ +P
Sbjct: 73 YVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAAISKREADRILNRVQETADKPRHRNE 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 133 YHPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|120436720|ref|YP_862406.1| transcription antitermination protein [Gramella forsetii KT0803]
gi|117578870|emb|CAL67339.1| transcription antitermination protein [Gramella forsetii KT0803]
Length = 185
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K + I + GL + ++ +P+E+V+ +R G+KVN ER +FPG
Sbjct: 10 KWYVVRAVSGQENKVKDYIEKEIEYLGLQDAIDQVLVPTEKVIQIRNGKKVNKERVYFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YV+I+A + ++ H IK VIGFLG G +P P+ SE+ ++ +V E +V+ +
Sbjct: 70 YVMIQANIGGEIPHIIKGINGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELSVKADNVA 129
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 130 IPFTIGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185
>gi|146299698|ref|YP_001194289.1| NusG antitermination factor [Flavobacterium johnsoniae UW101]
gi|146154116|gb|ABQ04970.1| transcription antitermination protein nusG [Flavobacterium
johnsoniae UW101]
Length = 183
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I ++R G++ V+++ +P+E+VV+V++G+K++ ++ +FPG
Sbjct: 8 KWYVVRAVSGQENKVKAYIETEIARLGMEDYVSQVLVPTEKVVTVKEGKKMSKDKVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YV+I+A + ++ H IK VIGFLG G P P+ SE+ ++ +V E AV S
Sbjct: 68 YVMIEANLVGEIPHIIKSITSVIGFLGEIKGGEPVPLRLSEVNRMLGKVDELAVNTDTRS 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 128 IPFSLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183
>gi|228472143|ref|ZP_04056909.1| transcription termination/antitermination factor NusG
[Capnocytophaga gingivalis ATCC 33624]
gi|228276346|gb|EEK15070.1| transcription termination/antitermination factor NusG
[Capnocytophaga gingivalis ATCC 33624]
Length = 182
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 111/180 (61%), Gaps = 5/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY+V+ S E K I +SR G V ++ +P+E+V +R G+KVN E+ F
Sbjct: 4 LEKNWYVVRAVSGQENKVKNYIESEISRLGYGDYVEQVLVPTEKVPQLRNGKKVNVEKVF 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGYV+IKA ++ ++ H IK VIGFLG G P+P+ SE+ ++ V+ +Q V
Sbjct: 64 FPGYVMIKADLSGEISHLIKGISGVIGFLGETKGGAPTPIRKSEVNRMLGIVD-ELQEKV 122
Query: 119 SSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V +EVGE V V DGPF F G V V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 123 DTVLIPYEVGESVKVIDGPFNGFTGNVDKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182
>gi|223041760|ref|ZP_03611953.1| transcription antitermination protein NusG [Actinobacillus minor
202]
gi|240948037|ref|ZP_04752454.1| transcription antitermination protein NusG [Actinobacillus minor
NM305]
gi|223017444|gb|EEF15862.1| transcription antitermination protein NusG [Actinobacillus minor
202]
gi|240297653|gb|EER48130.1| transcription antitermination protein NusG [Actinobacillus minor
NM305]
Length = 186
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S E + ++ + ++ E+ +P+E ++ G++ +ER+FFPG
Sbjct: 11 RWYVLQAFSGFENRVAVTLREYIKLHHMEEQFGEVLVPTEEIIENVGGKRRKTERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D + ++ P+V+GF+G T + P+P++ E + I+N+V+ +P
Sbjct: 71 YVLVEMEMNDYTWQLVRSVPRVMGFIGGTADKPAPISKKEADRILNRVQETADKPRHRNE 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE V V++GPFA F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 131 YFPGESVRVTEGPFADFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 183
>gi|319953894|ref|YP_004165161.1| transcription antitermination protein nusg [Cellulophaga algicola
DSM 14237]
gi|319422554|gb|ADV49663.1| transcription antitermination protein nusG [Cellulophaga algicola
DSM 14237]
Length = 183
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I ++R G + E+ +P+E+V+ VR G+KVN ER +
Sbjct: 5 LDKKWYVVRAVSGQENKIKGYIESEVARLGFGDYLDEVLVPTEKVIQVRNGKKVNKERVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRP 117
FPGY+++KA + +V H I+ VIGFLG G +P P+ +E+ ++ +V E V
Sbjct: 65 FPGYIMVKANLGGEVAHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELTVTTE 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 NVAIPFVMGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|254467958|ref|ZP_05081364.1| transcription termination/antitermination factor NusG [beta
proteobacterium KB13]
gi|207086768|gb|EDZ64051.1| transcription termination/antitermination factor NusG [beta
proteobacterium KB13]
Length = 178
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 112/176 (63%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY VQ YS EK + + R+ S + ++ +P E VV ++ G+K SERR
Sbjct: 1 MTKRWYAVQAYSGYEKIVQKGLLERIEISNIKDQFGDVLVPVEEVVELKAGQKTISERRL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H ++ TPKV F+G + P+P+ D E+E I+ +++ + P
Sbjct: 61 YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSALKPTPIKDKEVELILRRMDDSKVNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE + V DGPF F+G V+ ++ EK+++ VEVVIFGR TPVEL + Q++K
Sbjct: 121 KLTFEVGESIRVIDGPFKDFSGSVQEINYEKNKLRVEVVIFGRATPVELDFGQIQK 176
>gi|325285445|ref|YP_004261235.1| NusG antitermination factor [Cellulophaga lytica DSM 7489]
gi|324320899|gb|ADY28364.1| NusG antitermination factor [Cellulophaga lytica DSM 7489]
Length = 183
Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I ++R G + ++ +P+E+VV VR G+K+N E+ +
Sbjct: 5 LEKKWYVVRAVSGQENKIKGYIESEVARLGFSDYLEDVLVPTEKVVQVRNGKKINKEKVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRP 117
FPGY+++KA + ++ H I+ VIGFLG G +P P+ SE+ ++ +V E AV
Sbjct: 65 FPGYIMVKANLGGEMVHIIRSITNVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVTTD 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 SVAIPFVLGETIKVVDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|189345740|ref|YP_001942269.1| NusG antitermination factor [Chlorobium limicola DSM 245]
gi|189339887|gb|ACD89290.1| NusG antitermination factor [Chlorobium limicola DSM 245]
Length = 191
Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 106/174 (60%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E I + R GL+ + ++ +P ER V V+ G+K + + FP
Sbjct: 16 PRWYALRIYSGHERKVKEGIDAEVLRCGLEDKILQVYVPYERFVEVKNGKKRSLTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V
Sbjct: 76 GYVLIEAVLDKQTRNLILDIPSVMGFLGVDDNPTPLRPEEVEKILVPDNAVEHRSVIEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 FRVGDSVKVVDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|91215203|ref|ZP_01252175.1| putative transcription antitermination protein [Psychroflexus
torquis ATCC 700755]
gi|91186808|gb|EAS73179.1| putative transcription antitermination protein [Psychroflexus
torquis ATCC 700755]
Length = 183
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K + I +S GL V +I +P+E VV +R G+K+ E+ +FPG
Sbjct: 8 KWYVVRSISGSENKVKDYIEKEISHQGLSDYVDDILVPTENVVQIRDGKKITKEKVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA-AVQRPVSS 120
Y+++ A + +V H IK+ VIGFLG + +P P+ +SE+ ++ +V+ + Q+ +
Sbjct: 68 YIMVNANLEGEVGHVIKNVNGVIGFLGETKRGDPVPMRESEVNRMLGKVDQLSTQKENVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE + V DGPF SF G + ++E+K ++ V V IFGR TPVEL+Y QVEKI
Sbjct: 128 IPFNIGESIKVVDGPFNSFTGTIDKINEDKRKLQVMVKIFGRKTPVELSYMQVEKI 183
>gi|332042977|gb|EGI79175.1| transcription termination/antitermination factor NusG [Lacinutrix
algicola 5H-3-7-4]
Length = 184
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I ++R GL V ++ +P+E VV +R G+K+N E+ +F G
Sbjct: 8 KWYVVRAVSGQENKIKTYIENEIARLGLQDYVEQVLVPTENVVQIRNGKKINKEKVYFSG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y++IKA +T +V H IK VIGFLG G +P P+ SE+ ++ +V+ ++V
Sbjct: 68 YIMIKANLTGEVPHIIKGITNVIGFLGATKGGDPLPLRQSEVNRMLGKVDELTVEADTNV 127
Query: 122 F--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V V DGPF F+G ++N++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 128 AIPYTKGETVKVIDGPFNGFDGTIENINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184
>gi|327404141|ref|YP_004344979.1| transcription antitermination protein nusG [Fluviicola taffensis
DSM 16823]
gi|327319649|gb|AEA44141.1| transcription antitermination protein nusG [Fluviicola taffensis
DSM 16823]
Length = 183
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V+ S EKK E + +SR LD V+++ IP+E+V +R G+K++ E+ + PG
Sbjct: 7 RWYVVRAVSGKEKKVKEYLDLEISRLKLDDYVSQVLIPTEKVFQIRNGKKISKEKAYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YVLI+A + +V H IK P VIGFLG G +P P+ SE+ I+ +V E +
Sbjct: 67 YVLIEAALLGEVPHVIKGIPNVIGFLGAEKGGDPQPMRLSEVNRILGKVDELSETEEELK 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F +GE V V DGPF +F+G+V ++E+K ++ V V IFGR +EL+Y QVEK
Sbjct: 127 IPFVIGESVKVIDGPFNNFSGVVDEINEDKKKLKVMVKIFGRKNLLELSYMQVEK 181
>gi|317485864|ref|ZP_07944726.1| transcription termination/antitermination factor NusG [Bilophila
wadsworthia 3_1_6]
gi|316922879|gb|EFV44103.1| transcription termination/antitermination factor NusG [Bilophila
wadsworthia 3_1_6]
Length = 229
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
RWYIV YS E++ +I + + + L+ E+ +P+E+V+ + KG K + R+F+P
Sbjct: 56 RWYIVHTYSGFEQRVEATIKEMMRNAQDNGLIHEVVVPTEKVIELGKGGAKRTTTRKFYP 115
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY++++ MTD +H ++ PKV GF+G P+P+ D E I++ +E ++P
Sbjct: 116 GYIMLRMTMTDFSWHLVQSIPKVTGFVGGKNRPAPMKDEEAARILSLMETRQEQPRPKFS 175
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 176 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 228
>gi|284106472|ref|ZP_06386258.1| transcription antitermination protein NusG [Candidatus Poribacteria
sp. WGA-A3]
gi|283830068|gb|EFC34339.1| transcription antitermination protein NusG [Candidatus Poribacteria
sp. WGA-A3]
Length = 179
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ Y+ E + S+ R ++ GL+ ++ +P+E V+ ++ G++ S+R+F
Sbjct: 1 MAKNWYVIHTYAGYEGRVRTSLVERATQMGLEEEFGQVLVPTEDVIEIKDGKRRASKRKF 60
Query: 61 FPGYVLIKA--VMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ + D+ IK+TPKV GF+G G P P+ E + ++ Q+E+ V P
Sbjct: 61 FPGYVLVELEDPLRDETVVMIKETPKVTGFVGGEGVKPMPLPKEEADSLLKQIESGVSLP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VFF G+ V + DGPF FNG++ VD+E SR V V I GR TPVEL + Q+E+
Sbjct: 121 RERVFFSKGDNVRIVDGPFMGFNGLIDEVDDEHSRAKVLVSILGRATPVELVFAQIER 178
>gi|313204187|ref|YP_004042844.1| transcription antitermination protein nusg [Paludibacter
propionicigenes WB4]
gi|312443503|gb|ADQ79859.1| transcription antitermination protein nusG [Paludibacter
propionicigenes WB4]
Length = 182
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 4/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E I + S L V ++ IP+E+V +R G+K+ ER PG
Sbjct: 8 KWYVMRAISGKENKVKEYIDAEIKNSDLGQFVAQVLIPTEKVYQIRNGKKITKERSCMPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+A + ++ H +++TP VIGFLG N P+P+ SE+ I+ V+ +Q +
Sbjct: 68 YVLIEAYLIGEISHRLRNTPNVIGFLGEKNNVPTPIRPSEVNRILGSVD-ELQETAEEML 126
Query: 123 --FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V GPF+ F+G+++ V+ EK ++ V V+IFGR TP+ELA+ QVEK
Sbjct: 127 TPFYVGENVKVIFGPFSGFSGLIEEVNSEKKKLKVMVMIFGRKTPLELAFTQVEK 181
>gi|305664391|ref|YP_003860678.1| putative transcription antitermination protein [Maribacter sp.
HTCC2170]
gi|88708408|gb|EAR00644.1| putative transcription antitermination protein [Maribacter sp.
HTCC2170]
Length = 183
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I ++R G + ++ +P+E+V+ +R G+K+N ER +
Sbjct: 5 LEKKWYVVRAVSGQENKIKGYIESEVTRLGFSDYLEDVLVPTEKVIQIRNGKKINKERVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRP 117
FPGY++IKA + ++ H I+ VIGFLG G +P P+ +E+ ++ +V E AV
Sbjct: 65 FPGYIMIKANLGGEMIHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELAVNTD 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 SIAIPFVHGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|294644047|ref|ZP_06721824.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294810199|ref|ZP_06768866.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|292640571|gb|EFF58812.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294442611|gb|EFG11411.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 182
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + L S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 9 KWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + ++
Sbjct: 69 YVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELNIP 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 129 YVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 181
>gi|227536126|ref|ZP_03966175.1| transcription antitermination protein NusG [Sphingobacterium
spiritivorum ATCC 33300]
gi|300772097|ref|ZP_07081967.1| transcription termination/antitermination factor NusG
[Sphingobacterium spiritivorum ATCC 33861]
gi|227244023|gb|EEI94038.1| transcription antitermination protein NusG [Sphingobacterium
spiritivorum ATCC 33300]
gi|300760400|gb|EFK57226.1| transcription termination/antitermination factor NusG
[Sphingobacterium spiritivorum ATCC 33861]
Length = 181
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR G+ HLV ++ IP E+ +R G+KV ER ++PG
Sbjct: 7 KWYVVRAVSGKEKKVKQYIDAEISRLGIQHLVAQVLIPMEKYYQMRDGKKVAKERNYYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVLI+A + + H IK+ VIGFLG N P+ SE+ I+ +V E A Q +V
Sbjct: 67 YVLIEASLDAETEHVIKNINSVIGFLGDKAGNAIPLRPSEVNRILGKVDEMAEQGETINV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF F G ++ V E+K ++ V V +FGR TP+EL Y QVEK
Sbjct: 127 PYYVGETVKVNDGPFNGFTGEIEEVHEDKKKLIVMVKVFGRKTPLELNYMQVEK 180
>gi|29348148|ref|NP_811651.1| transcription anti-termination protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|153805945|ref|ZP_01958613.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185]
gi|160883078|ref|ZP_02064081.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483]
gi|237717387|ref|ZP_04547868.1| transcription anti-termination protein [Bacteroides sp. D1]
gi|237718755|ref|ZP_04549236.1| transcription anti-termination protein [Bacteroides sp. 2_2_4]
gi|253569578|ref|ZP_04846988.1| transcription anti-termination protein [Bacteroides sp. 1_1_6]
gi|260175404|ref|ZP_05761816.1| transcription anti-termination protein [Bacteroides sp. D2]
gi|262406152|ref|ZP_06082702.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_22]
gi|293372131|ref|ZP_06618522.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|298386169|ref|ZP_06995726.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 1_1_14]
gi|298483052|ref|ZP_07001233.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D22]
gi|299144635|ref|ZP_07037703.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_23]
gi|315923634|ref|ZP_07919874.1| transcription anti-termination protein [Bacteroides sp. D2]
gi|29340051|gb|AAO77845.1| transcription anti-termination protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|149130622|gb|EDM21828.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185]
gi|156111550|gb|EDO13295.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483]
gi|229443370|gb|EEO49161.1| transcription anti-termination protein [Bacteroides sp. D1]
gi|229451887|gb|EEO57678.1| transcription anti-termination protein [Bacteroides sp. 2_2_4]
gi|251841597|gb|EES69678.1| transcription anti-termination protein [Bacteroides sp. 1_1_6]
gi|262357027|gb|EEZ06117.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_22]
gi|292632923|gb|EFF51510.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|295085440|emb|CBK66963.1| transcription antitermination protein nusG [Bacteroides
xylanisolvens XB1A]
gi|298261397|gb|EFI04264.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 1_1_14]
gi|298270796|gb|EFI12376.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D22]
gi|298515126|gb|EFI39007.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_23]
gi|313697509|gb|EFS34344.1| transcription anti-termination protein [Bacteroides sp. D2]
Length = 180
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + L S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + ++
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|325104986|ref|YP_004274640.1| transcription antitermination protein nusG [Pedobacter saltans DSM
12145]
gi|324973834|gb|ADY52818.1| transcription antitermination protein nusG [Pedobacter saltans DSM
12145]
Length = 180
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR L+HLV ++ IP E+ +R G+K+ ER ++PG
Sbjct: 6 KWYVVRAVSGKEKKVKQYIDAEISRLELNHLVPQVLIPMEKYYQMRDGKKIAKERNYYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVL++A + ++ IK+ VIGFLG + N P+ +E+ I+ +V E Q + ++
Sbjct: 66 YVLVEAALNAELELIIKNLNSVIGFLGDKDGNAVPLRPAEVNRILGKVDEMTEQGEMMNI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V DGPF F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 PYYVGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179
>gi|320352905|ref|YP_004194244.1| transcription antitermination protein nusG [Desulfobulbus
propionicus DSM 2032]
gi|320121407|gb|ADW16953.1| transcription antitermination protein nusG [Desulfobulbus
propionicus DSM 2032]
Length = 187
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 11/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYIV ++ E K ++ R+ +G + L EI +P+E+VV + KG + SER+F
Sbjct: 1 MAKSWYIVHTHTGFENKVKSTLEERIKLAGQEDLFGEILVPTEQVVEMVKGARKTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS-----------PVTDSEIEHIMNQ 109
FPGY+L+ M ++ +HT+++TP+V GF+G + + +TD E + I+ +
Sbjct: 61 FPGYILVNMEMNERSWHTVQETPRVTGFVGINMSQAGADKDIYKKIPSLTDKEADKILGR 120
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ +P V F G+ V V DGPFA+F G+++ V +K RV V V IFGR TPVEL
Sbjct: 121 IADGANKPKPKVVFAEGDAVRVIDGPFANFQGVIEEVFPDKGRVRVMVSIFGRSTPVELE 180
Query: 170 YNQVEK 175
Y QV K
Sbjct: 181 YIQVSK 186
>gi|126663347|ref|ZP_01734345.1| transcription anti-termination protein [Flavobacteria bacterium
BAL38]
gi|126625005|gb|EAZ95695.1| transcription anti-termination protein [Flavobacteria bacterium
BAL38]
Length = 183
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I +R G+ ++++ +P+E+VV+VR G+K+ ++ +FPG
Sbjct: 8 KWYVVRAVSGQENKVKAYIETETARLGMADYISQVLVPTEKVVTVRDGKKIAKDKVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
Y++I+A +T ++ H IK P VIGFLG G + P+ SE+ ++ +V E +V+ +
Sbjct: 68 YIMIEANLTGEIPHIIKSIPGVIGFLGETKGGDAVPLRQSEVNRMLGKVDELSVKVDSVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + +GE V V DGPF FNG ++ V+EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 128 IPYNIGETVKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183
>gi|160888411|ref|ZP_02069414.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492]
gi|270294764|ref|ZP_06200965.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D20]
gi|317477763|ref|ZP_07936956.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 4_1_36]
gi|156862088|gb|EDO55519.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492]
gi|270274011|gb|EFA19872.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D20]
gi|316906108|gb|EFV27869.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 4_1_36]
Length = 180
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + S+
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQESGEDLSIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|89890187|ref|ZP_01201698.1| transcription termination/antitermination factor NusG
[Flavobacteria bacterium BBFL7]
gi|89518460|gb|EAS21116.1| transcription termination/antitermination factor NusG
[Flavobacteria bacterium BBFL7]
Length = 185
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V+ S E K + I ++ L + +I +P+E+VV +R G+K+N E+ +FPGY
Sbjct: 11 WYVVRSVSGQENKIKDYIESEIAHHNLQDYLKQILVPTEKVVQIRNGKKINKEKVYFPGY 70
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
++I+A + +V H IK VIGFLG G +P P+ SE+ ++ +V E A Q ++
Sbjct: 71 IMIQARLEGEVPHIIKSVNGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAEQVDNIAI 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++VGE + V DGPF FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 131 PYKVGETIKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185
>gi|212695317|ref|ZP_03303445.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855]
gi|237711661|ref|ZP_04542142.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA]
gi|237725897|ref|ZP_04556378.1| transcription anti-termination protein [Bacteroides sp. D4]
gi|265753081|ref|ZP_06088650.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_33FAA]
gi|212662227|gb|EEB22801.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855]
gi|229435705|gb|EEO45782.1| transcription anti-termination protein [Bacteroides dorei
5_1_36/D4]
gi|229454356|gb|EEO60077.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA]
gi|263236267|gb|EEZ21762.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_33FAA]
Length = 180
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ + +V
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQESGEELNVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 127 YTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179
>gi|91205973|ref|YP_538328.1| transcription antitermination protein NusG [Rickettsia bellii
RML369-C]
gi|157826663|ref|YP_001495727.1| transcription antitermination protein NusG [Rickettsia bellii OSU
85-389]
gi|122425301|sp|Q1RHC5|NUSG_RICBR RecName: Full=Transcription antitermination protein nusG
gi|91069517|gb|ABE05239.1| Transcription antitermination protein NusG [Rickettsia bellii
RML369-C]
gi|157801967|gb|ABV78690.1| transcription antitermination protein NusG [Rickettsia bellii OSU
85-389]
Length = 190
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY++ S E + + R+S+ + +I +P V V++ + V E++
Sbjct: 17 TKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLM 76
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I ++E + +
Sbjct: 77 PSYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNI--RLETEAKEAKDAK 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V++GPF +F G V+ VD+EK+R+ V V IFG+ TP+EL++ QV+K
Sbjct: 135 LYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188
>gi|254881310|ref|ZP_05254020.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA]
gi|254834103|gb|EET14412.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA]
Length = 183
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 10 KWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ + +V
Sbjct: 70 YVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEELNVP 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 130 YTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 182
>gi|150003400|ref|YP_001298144.1| transcription anti-termination protein [Bacteroides vulgatus ATCC
8482]
gi|294777810|ref|ZP_06743254.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|319640312|ref|ZP_07995037.1| transcription antitermination protein nusG [Bacteroides sp.
3_1_40A]
gi|149931824|gb|ABR38522.1| transcription anti-termination protein [Bacteroides vulgatus ATCC
8482]
gi|294448264|gb|EFG16820.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|317388087|gb|EFV68941.1| transcription antitermination protein nusG [Bacteroides sp.
3_1_40A]
Length = 180
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ + +V
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEELNVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 127 YTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179
>gi|297184066|gb|ADI20185.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 182
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E+K I ++ +G+ LV + IP E+VV VR G+KV E+ PG
Sbjct: 7 KWYVLRTISGQEQKTKTYIEKDMAHAGMSDLVGRVLIPLEKVVQVRNGKKVIKEKTRTPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ I+AV+T +V H IK+ P V+GFL GE+PSP+ SE+ ++ +V+ + +
Sbjct: 67 YMYIEAVLTGEVSHMIKNLPNVVGFLSNVKGEDPSPMRASEVSRLLGEVDRQAENAAMLM 126
Query: 122 F-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +GE V V +GPF++F+ ++ ++EEK ++ V V IFGR TPVEL + +VEK+
Sbjct: 127 IPFTLGETVKVINGPFSTFDATIEKINEEKQKLEVTVKIFGRKTPVELGFTEVEKL 182
>gi|159896654|ref|YP_001542901.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
gi|159889693|gb|ABX02773.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
Length = 188
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++++ R+ + + + + +P+E + ++ G++ +++ FPGY
Sbjct: 17 WYVIHTYSGYENKVMQNLRHRIESMDMRNQIFRVVVPTEEEIEIKNGQRRTVQKKVFPGY 76
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ MTD ++ +++TP V F+G G PSP+ D E+ I+ Q+E + P V +E
Sbjct: 77 VLVQMAMTDDSWYVVRNTPGVTSFVGMGTKPSPLADEEVRFILKQMEE--EAPKVKVNYE 134
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+G+ V ++DGPF F G+V +DEE+ RV V V FGR PVEL + QV +++
Sbjct: 135 IGQTVKITDGPFTDFEGVVDEIDEERGRVRVLVSFFGREAPVELDFLQVIRVI 187
>gi|300871171|ref|YP_003786043.1| transcription antitermination protein NusG [Brachyspira pilosicoli
95/1000]
gi|300688871|gb|ADK31542.1| transcription antitermination protein, NusG [Brachyspira pilosicoli
95/1000]
Length = 193
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV E K E + R+ +G+ LV +I IPSE V + G+KV E F+PG
Sbjct: 10 RWYIVHTQHGYENKVRERLEKRIKENGMSDLVVDIYIPSETVQKNKNGKKVTKEEFFYPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQ 115
YVL+K VM D ++ TP V GF+G+ P+P++++++ I EA +
Sbjct: 70 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFEDREAKNK 129
Query: 116 RPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + FE+GE+V V DGPF NG+++N++ +K +V V++ IFGR TP EL +N+
Sbjct: 130 NDINELIGMEFEIGEKVQVIDGPFNGLNGLIENINADKGKVTVKIEIFGRSTPTELDFNK 189
Query: 173 VEKI 176
V+K+
Sbjct: 190 VKKL 193
>gi|237753301|ref|ZP_04583781.1| transcription antitermination protein nusG [Helicobacter
winghamensis ATCC BAA-430]
gi|229375568|gb|EEO25659.1| transcription antitermination protein nusG [Helicobacter
winghamensis ATCC BAA-430]
Length = 176
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER
Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV +K + ++HTI+ PKV F+G + P+P+++++I HI+ +V+ P
Sbjct: 61 YPGYVFVKVDLDTALWHTIQSLPKVSRFIGESKKPTPLSEADINHIIEKVQNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V + +GPFA+F GIV+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 IIFEAGEVVRIIEGPFANFTGIVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|255692646|ref|ZP_05416321.1| transcription termination/antitermination factor NusG [Bacteroides
finegoldii DSM 17565]
gi|260621622|gb|EEX44493.1| transcription termination/antitermination factor NusG [Bacteroides
finegoldii DSM 17565]
Length = 180
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + ++
Sbjct: 67 YVLVEAALVGEVSHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|194333127|ref|YP_002014987.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
gi|194310945|gb|ACF45340.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 191
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 105/173 (60%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY +++YS E+K E I + R GL + ++ +P ER V V+ G+K + + FPG
Sbjct: 17 RWYALRIYSGHERKVKEGIESEVERLGLADKLLQVYVPYERFVEVKNGKKRSLTKNAFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI+AV+ + + I D P V+GFLG G+ P+P+ E+E I+ + QR V F
Sbjct: 77 YVLIEAVLDKQTRNLIMDIPSVMGFLGVGDVPTPLRPDEVEKILEPESSVEQRSVVEAPF 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 137 QIGDSVKVVDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|78187809|ref|YP_375852.1| NusG antitermination factor [Chlorobium luteolum DSM 273]
gi|78167711|gb|ABB24809.1| transcription antitermination protein nusG [Chlorobium luteolum DSM
273]
Length = 192
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY +++YS E+K E I + RSGL + ++ +P E+ V V+ G+K + + FPG
Sbjct: 18 RWYALRIYSGHERKVKEGIDAEVERSGLGDKILQVYVPYEKFVEVKNGKKRSMTKNAFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122
YVLI+AV+ + + I D P ++GFLG +NP P+ E+E ++ Q EA+V+ R +
Sbjct: 78 YVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLL-QPEASVEHRTIIEAP 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 137 FQVGDSVKVIDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 190
>gi|189465406|ref|ZP_03014191.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM
17393]
gi|189437680|gb|EDV06665.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM
17393]
Length = 180
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS--SV 121
YVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ +Q S+
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVD-ELQDATEELSI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 126 PYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|225621220|ref|YP_002722478.1| transcription antitermination protein NusG [Brachyspira
hyodysenteriae WA1]
gi|225216040|gb|ACN84774.1| transcription antitermination protein NusG [Brachyspira
hyodysenteriae WA1]
Length = 195
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV E K E I R +G+ L+ +I IPSE V S + G+KV+ E F+PG
Sbjct: 12 KWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQ 115
YVL+K VM D ++ TP V GF+G+ P+P+++S++ I E +
Sbjct: 72 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFENREDKSK 131
Query: 116 RPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + F++GE+V V DGPF NGI++N++ +K RV V++ IFGR TP EL +++
Sbjct: 132 TGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTPTELEFSK 191
Query: 173 VEKI 176
V+K+
Sbjct: 192 VKKL 195
>gi|325921468|ref|ZP_08183323.1| transcription antitermination protein nusG [Xanthomonas gardneri
ATCC 19865]
gi|325548015|gb|EGD19014.1| transcription antitermination protein nusG [Xanthomonas gardneri
ATCC 19865]
Length = 165
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 107/161 (66%), Gaps = 10/161 (6%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK---------AVMTDKV 75
R+ R+ ++ ++ +P+E V+ +R G+K SER+FFPGYVL++ + ++
Sbjct: 4 RIVRAEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEAGIPRIDNES 63
Query: 76 YHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDG 134
+H +K+T KV+GF+G T + P P+ D E + I+ +V+ V++P V FE G+ V V+DG
Sbjct: 64 WHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTDG 123
Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
PF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 124 PFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 164
>gi|257791876|ref|YP_003182482.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|317489879|ref|ZP_07948372.1| transcription termination/antitermination factor NusG [Eggerthella
sp. 1_3_56FAA]
gi|325829776|ref|ZP_08163234.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|257475773|gb|ACV56093.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|316911034|gb|EFV32650.1| transcription termination/antitermination factor NusG [Eggerthella
sp. 1_3_56FAA]
gi|325487943|gb|EGC90380.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 176
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M +WY++ YS E K +++ R+ GL++ V I IP+E V +++G R+V SE++
Sbjct: 1 MAKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFGIEIPTEMVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ + +++TP V GF+G NP+P+T E IM + + S
Sbjct: 61 VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGADGNPAPLTRDEYNKIMKRTSREAPKKTS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S EVG+ V V GP A F+G+V V + +V V V IFGR TPVEL+++QV KI
Sbjct: 121 SS-LEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVMVSIFGRETPVELSFDQVAKI 176
>gi|254442748|ref|ZP_05056224.1| transcription termination/antitermination factor NusG
[Verrucomicrobiae bacterium DG1235]
gi|198257056|gb|EDY81364.1| transcription termination/antitermination factor NusG
[Verrucomicrobiae bacterium DG1235]
Length = 191
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q SN E K + + ++ V E+ +P+E V V+ G+K R+F+PGY
Sbjct: 12 WYVIQTLSNQEGKVKRYLDKFIKEDEMEEYVFEVLVPTETVTEVKNGKKTQLVRKFYPGY 71
Query: 65 VLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+ + D K ++ +++T VI F+G G+ P+P+ SEI+ I++QVEAA +
Sbjct: 72 AFVHMRLYDENGKLLNKPWYFVRETAGVINFVG-GDRPTPLKKSEIDTILSQVEAATGKE 130
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V ++DGPF + NG + +D EK ++ V V IFGR TPVEL Y QVE++
Sbjct: 131 TPKVQFEIGEEVKITDGPFLNLNGRIDEIDPEKGKLKVSVSIFGRFTPVELEYWQVERL 189
>gi|53715482|ref|YP_101474.1| transcription anti-termination protein [Bacteroides fragilis YCH46]
gi|60683455|ref|YP_213599.1| putative transcription antitermination protein [Bacteroides
fragilis NCTC 9343]
gi|253566653|ref|ZP_04844106.1| transcription anti-termination protein [Bacteroides sp. 3_2_5]
gi|255011630|ref|ZP_05283756.1| putative transcription antitermination protein [Bacteroides
fragilis 3_1_12]
gi|265767531|ref|ZP_06095197.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_16]
gi|313149465|ref|ZP_07811658.1| transcription anti-termination protein [Bacteroides fragilis
3_1_12]
gi|52218347|dbj|BAD50940.1| transcription anti-termination protein [Bacteroides fragilis YCH46]
gi|60494889|emb|CAH09696.1| putative transcription antitermination protein [Bacteroides
fragilis NCTC 9343]
gi|251944825|gb|EES85300.1| transcription anti-termination protein [Bacteroides sp. 3_2_5]
gi|263252836|gb|EEZ24348.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_16]
gi|301164939|emb|CBW24500.1| putative transcription antitermination protein [Bacteroides
fragilis 638R]
gi|313138232|gb|EFR55592.1| transcription anti-termination protein [Bacteroides fragilis
3_1_12]
Length = 180
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + +V
Sbjct: 67 YVLVEAALVGEVSHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQETGEDLNVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YIVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|218131350|ref|ZP_03460154.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697]
gi|317476377|ref|ZP_07935626.1| transcription termination/antitermination factor NusG [Bacteroides
eggerthii 1_2_48FAA]
gi|329956685|ref|ZP_08297258.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|217986282|gb|EEC52619.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697]
gi|316907403|gb|EFV29108.1| transcription termination/antitermination factor NusG [Bacteroides
eggerthii 1_2_48FAA]
gi|328524057|gb|EGF51133.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 180
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVF 122
YVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V E ++
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEELNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|167764384|ref|ZP_02436509.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC
43183]
gi|167697789|gb|EDS14368.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC
43183]
Length = 190
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 17 KWYVLRAISGKETKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVF 122
YVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V E ++
Sbjct: 77 YVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEELNIP 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 137 YVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 189
>gi|225175687|ref|ZP_03729681.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1]
gi|225169016|gb|EEG77816.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1]
Length = 174
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+V Y+ E K ++ R+ + + + +P E+ + ++ G+K + ++
Sbjct: 1 MSKNWYVVHTYAGYENKVKTNLEKRVESMEMQDKIFRVLVPMEKELEIKNGKKKETLKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++TD ++ +++TP V GF+G G P P++D+EI I+ Q+ +P
Sbjct: 61 FPGYVLVEMIVTDDSWYVVRNTPGVTGFVGPGSKPIPLSDAEISQILKQMGMGDSKP--K 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VGE V V+DGPFA+F G V+ V E++ ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 IDFSVGENVRVTDGPFANFVGSVEEVLEDRRKIKVLVSMFGRETPVELEFYQVEKL 174
>gi|78188330|ref|YP_378668.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3]
gi|78170529|gb|ABB27625.1| transcription antitermination protein nusG [Chlorobium
chlorochromatii CaD3]
Length = 191
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E+I ++R GL + ++ +P ER V V+ G+K + + +P
Sbjct: 16 PRWYALRIYSGHERKVKEAIEFEVARCGLSDKILQVHVPYERFVEVKNGKKRSLTKNAYP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI++V+ + + I D P VIGFLG +NP P+ E+E I+ + R V V
Sbjct: 76 GYVLIESVLDKQTRNLILDVPSVIGFLGVDDNPIPLRPDEVEKILEPEKDVEHRSVVDVP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V DGPF+S G+V V E+ +V V + FGR TP EL + QV+ +
Sbjct: 136 FNVGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRGTPTELDFTQVKPL 189
>gi|188584822|ref|YP_001916367.1| transcription antitermination protein nusG [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349509|gb|ACB83779.1| transcription antitermination protein nusG [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 174
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +W++V YS E K ++ R++ G+D + I +P+E ++++ GR+ E++
Sbjct: 1 MEKQWFVVHTYSGYENKVKTNLEKRVASMGMDDKIFRIVVPTETQINIKDGRRQEKEKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++ VM + ++ +++TP V GF+G+G P P+ + E+ IM Q+ + P
Sbjct: 61 FPGYVIVEMVMDEDSWYVVRNTPGVTGFVGSGAKPVPLNEDEVASIMKQM--GYEEPKKE 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E G+ V + +GPF +F+G ++ V +K +V V V +FGR TPVEL + QVEK+
Sbjct: 119 VDLEAGQEVKILEGPFENFSGQIEEVYPDKEKVKVTVSMFGRETPVELDFEQVEKV 174
>gi|325280613|ref|YP_004253155.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
gi|324312422|gb|ADY32975.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
Length = 182
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+++V EKK E I ++ GL V+++ IP+E++ VR G+K++ ER FFPG
Sbjct: 7 RWYVLRVIGGKEKKVKEYIENEVASLGLQDYVSQVLIPTEKIYQVRNGKKISKERNFFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
YV+I+A + ++ H ++D VIGFLG G +P P+ SEI I+ V+ ++P +
Sbjct: 67 YVMIEAALVGEIPHMLRDITNVIGFLGETKGGDPVPMRQSEINRILGTVDELSEQPEEIN 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V V+DGPF F G+++ V+ +K RV V V +FGR TP+EL++ QVEK
Sbjct: 127 IPYVVGESVKVTDGPFNGFTGVIEEVNNDKKRVKVIVKVFGRQTPLELSFMQVEK 181
>gi|319900912|ref|YP_004160640.1| transcription antitermination protein nusG [Bacteroides helcogenes
P 36-108]
gi|319415943|gb|ADV43054.1| transcription antitermination protein nusG [Bacteroides helcogenes
P 36-108]
Length = 180
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + ++
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQESGEDLNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|548392|sp|P36262|NUSG_LIBAS RecName: Full=Transcription antitermination protein nusG
gi|144455|gb|AAA23104.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|739022|prf||2002224A transcription antitermination protein
Length = 70
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE
Sbjct: 1 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 60
Query: 168 LAYNQVEKIV 177
LAYNQVEKIV
Sbjct: 61 LAYNQVEKIV 70
>gi|213963080|ref|ZP_03391338.1| transcription termination/antitermination factor NusG
[Capnocytophaga sputigena Capno]
gi|213954164|gb|EEB65488.1| transcription termination/antitermination factor NusG
[Capnocytophaga sputigena Capno]
Length = 183
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ + E K I SR G V E+ +P+E+VV VR G+K+ +R PG
Sbjct: 8 KWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKITKDRVHMPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YV++K + +V H IK P V+GFL G +P P+ +++ ++ QV E A +
Sbjct: 68 YVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVNRMLGQVDELAETVETVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V + DGPF FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 128 IPFEVGEMVKLIDGPFNGFNGTIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183
>gi|242309997|ref|ZP_04809152.1| transcription antitermination protein nusG [Helicobacter pullorum
MIT 98-5489]
gi|239523294|gb|EEQ63160.1| transcription antitermination protein nusG [Helicobacter pullorum
MIT 98-5489]
Length = 176
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER
Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVKEHHLEERLTDIVVPTEDIIEVKNNKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV I+ + ++HTI+ PKV F+G + P+P+++++I HI+ +V+ P
Sbjct: 61 YPGYVFIRVDLDTALWHTIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V + +GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 IIFEAGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|296126978|ref|YP_003634230.1| NusG antitermination factor [Brachyspira murdochii DSM 12563]
gi|296018794|gb|ADG72031.1| NusG antitermination factor [Brachyspira murdochii DSM 12563]
Length = 195
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV E K E I R +G+ L+ +I IPSE V S + G+KV+ E F+PG
Sbjct: 12 RWYIVHTQHGYENKVRERIEKRTKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQ 115
YVL+K VM D ++ TP V GF+G+ P+P++++++ I + +
Sbjct: 72 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFENRDEKSK 131
Query: 116 RPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + F++GE+V V DGPF NG+++N++ +K RV V++ IFGR TP EL +++
Sbjct: 132 TEINEIIGMEFDIGEKVQVIDGPFNGLNGVIENINSDKGRVTVKIEIFGRSTPTELEFSK 191
Query: 173 VEKI 176
V+K+
Sbjct: 192 VKKL 195
>gi|189499294|ref|YP_001958764.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
gi|189494735|gb|ACE03283.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
Length = 193
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 104/174 (59%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E I + R L+ + ++ +P E+ V VR G+K + + FP
Sbjct: 18 PRWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+A++ + + I D P V+GFLG + P+P+ E+E I+ QR V
Sbjct: 78 GYVLIEAILDKQTKNLIMDIPSVMGFLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAP 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ I
Sbjct: 138 FRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVKSI 191
>gi|21672991|ref|NP_661056.1| transcription antitermination protein NusG [Chlorobium tepidum TLS]
gi|21646053|gb|AAM71398.1| transcription antitermination protein NusG [Chlorobium tepidum TLS]
Length = 191
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 104/172 (60%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++YS E+K ESI + R GL + ++ IP ER V V+ G+K + + FPGY
Sbjct: 18 WYALRIYSGHERKVKESIEMEVERCGLSESIKQVYIPYERFVEVKNGKKRSLTKNAFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI+AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V F+
Sbjct: 78 VLIEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPGGAIEHRAVVEAPFK 137
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF+S GIV V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 138 VGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKPV 189
>gi|145220413|ref|YP_001131122.1| transcription antitermination protein nusG [Prosthecochloris
vibrioformis DSM 265]
gi|145206577|gb|ABP37620.1| transcription antitermination protein nusG [Chlorobium
phaeovibrioides DSM 265]
Length = 191
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 103/173 (59%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY +++YS E+K E I + RSGL + ++ +P ER + V+ G+K + FPG
Sbjct: 17 RWYALRIYSGHERKVKEGIEAEVERSGLGDKILQVYVPYERFIEVKNGKKRAMTKNAFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI+AV+ + + I D P ++GFLG +NP P+ E+E ++ A +R V +
Sbjct: 77 YVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPESAVTERTVVEAPY 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 137 NVGDSVKVIDGPFSSLAGVVHEVCPERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|329962254|ref|ZP_08300260.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328530362|gb|EGF57239.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 180
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + ++
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQEAGEDLNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVNYGPFTGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|313683397|ref|YP_004061135.1| transcription antitermination protein nusg [Sulfuricurvum kujiense
DSM 16994]
gi|313156257|gb|ADR34935.1| transcription antitermination protein nusG [Sulfuricurvum kujiense
DSM 16994]
Length = 176
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY +Q Y+ E+ +I ++ + L ++TE+ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHRWYSIQTYAGSERSVKAAIENIIAENNLQDVITEVIVPTEDVIEVKNGKKKITERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV ++ ++ H I+ P+V GF+G P+P++D++I I+++V P
Sbjct: 61 YSGYVFANMDLSIELQHRIQSLPRVAGFIGESNKPTPLSDNDIAVILDRVTNR-SAPKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VFF+ GE V + DGPFA+F G V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 120 VFFDNGEMVRIVDGPFANFTGTVDEYDLEHGTLKLNVSIFGRSTPVDISYTQVEKII 176
>gi|224418583|ref|ZP_03656589.1| transcription antitermination protein NusG [Helicobacter canadensis
MIT 98-5491]
gi|253826866|ref|ZP_04869751.1| transcription antitermination protein NusG [Helicobacter canadensis
MIT 98-5491]
gi|313142111|ref|ZP_07804304.1| transcription antitermination protein nusg [Helicobacter canadensis
MIT 98-5491]
gi|253510272|gb|EES88931.1| transcription antitermination protein NusG [Helicobacter canadensis
MIT 98-5491]
gi|313131142|gb|EFR48759.1| transcription antitermination protein nusg [Helicobacter canadensis
MIT 98-5491]
Length = 176
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER
Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV IK + ++H I+ PKV F+G + P+P+++++I HI+ +V+ P
Sbjct: 61 YPGYVFIKVDLDTALWHKIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V + +GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 VIFETGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|296131823|ref|YP_003639070.1| NusG antitermination factor [Thermincola sp. JR]
gi|296030401|gb|ADG81169.1| NusG antitermination factor [Thermincola potens JR]
Length = 174
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++ YS E K ++ R+ + + I +P E V ++ G+K ++R+
Sbjct: 1 MEKQWYVIHTYSGYENKVKANLEKRIESMNMGDKIFRILVPMEDEVEIKDGKKKVAKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++T V GF+G+G P P+ ++E+ HI+ Q+ V+ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTSGVTGFVGSGSKPIPLHEAEVRHILRQM--GVEEPRAK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+G+ V V+ GPF +F G ++ + +K ++ V V +FGR TPVEL Y QVE++
Sbjct: 119 IDFELGQNVRVTSGPFENFIGSIEEIYPDKGKIKVLVSMFGRETPVELEYGQVERL 174
>gi|294674795|ref|YP_003575411.1| transcription termination/antitermination factor NusG [Prevotella
ruminicola 23]
gi|294473430|gb|ADE82819.1| transcription termination/antitermination factor NusG [Prevotella
ruminicola 23]
Length = 181
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E + + R S L V ++ +P+E+ +R G++V E+ F P
Sbjct: 7 KWYVLRAVSGKEAKVKEYLEALMKRDSFLQANVGQVLLPTEKYAQLRNGKRVVKEKLFLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
GYVL++A + ++ HT++ P V+GFLG +NP+PV S+I I+ E ++ V
Sbjct: 67 GYVLVEANLQGEMAHTLRFMPNVLGFLGGLDNPTPVKQSDINRILGTAEETEIKSEEIGV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V+DGPF+ F+GI++ V+ EK ++ V V IFGR TP+EL YNQVEK
Sbjct: 127 PYAVDEAVKVTDGPFSGFSGIIEEVNAEKHKLKVMVKIFGRKTPLELGYNQVEK 180
>gi|119356075|ref|YP_910719.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
gi|119353424|gb|ABL64295.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
Length = 191
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 103/174 (59%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E I ++R GL + +I +P ER V V+ G+K + + FP
Sbjct: 16 PRWYALRIYSGHERKVKEGIEAEVARCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P V+GFLG + P+P+ E+E I+ R V
Sbjct: 76 GYVLIEAVLDKQTRNVILDMPSVMGFLGVDDVPTPLRPEEVEKILVTENTVEHRAVIEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 FRIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|223936440|ref|ZP_03628352.1| NusG antitermination factor [bacterium Ellin514]
gi|223894958|gb|EEF61407.1| NusG antitermination factor [bacterium Ellin514]
Length = 182
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +W+++ S E+K ESI R+ ++ + E+ +P E+VV VR +K S R+
Sbjct: 1 MRSQWFVIHTLSGQEQKVKESIEKRIKAEEMEEYIKEVLVPMEKVVEVRNQKKTVSTRKL 60
Query: 61 FPGYVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
+PGYV + + D K ++ IK+T VIGF+G GE P+P E+E I +Q+ +
Sbjct: 61 WPGYVFVDMALLDENKRIIEKPWYFIKETQGVIGFVG-GEPPTPTPADEVESIKSQISDS 119
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+R V FEVGE V +++GPF +F+G+++ ++ E+ ++ V V IFGR TPVEL Y QV
Sbjct: 120 EEREKPKVNFEVGETVKINNGPFLNFSGVIEEIEPERGKLKVTVNIFGRNTPVELEYWQV 179
Query: 174 EK 175
EK
Sbjct: 180 EK 181
>gi|224537804|ref|ZP_03678343.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520624|gb|EEF89729.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus
DSM 14838]
Length = 180
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAISGKEAKVREYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVF 122
YVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V E ++
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDAGEELNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|108804986|ref|YP_644923.1| transcription antitermination protein nusG [Rubrobacter
xylanophilus DSM 9941]
gi|108766229|gb|ABG05111.1| transcription antitermination protein nusG [Rubrobacter
xylanophilus DSM 9941]
Length = 176
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ R+ GL EI IP+E+V+ ++ G+KV + R FPG
Sbjct: 3 KWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVF 122
Y+L+ M D + I+ TP V +G+G+ P+P++ +E+E +++ E + V ++V
Sbjct: 63 YILVNVEMNDDTWRVIRQTPGVTQIVGSGDKPTPLSRAEVERLLHPEEPEKREKVKATVD 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V V GP + F G + +++ ++S+V V V IFGR TPVEL++NQV K+
Sbjct: 123 FDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAKL 176
>gi|257063593|ref|YP_003143265.1| transcription antitermination protein nusG [Slackia
heliotrinireducens DSM 20476]
gi|256791246|gb|ACV21916.1| transcription antitermination protein nusG [Slackia
heliotrinireducens DSM 20476]
Length = 178
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M +WY++ YS E K +++ R+ GL+ + +I IP+E V +++G R+V SE++
Sbjct: 1 MAKKWYVLHTYSGYENKVKQTLESRVEMMGLEDSIVDIQIPTEMVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-V 118
FPGYVL++ M ++ + +++TP V GF+G P P+T E IM + P
Sbjct: 61 VFPGYVLVRMEMNNQNWSVVRNTPGVTGFVGGQGEPEPLTREEYNKIMKRTSVKAGAPKK 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+S EVG+ V V+ GP A F+G V V E +V V V IFGR TPVEL+++QV +I
Sbjct: 121 TSTSLEVGQSVKVTSGPLADFDGTVSEVSPEAGKVKVLVSIFGRETPVELSFDQVARI 178
>gi|212702089|ref|ZP_03310217.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098]
gi|212674494|gb|EEB34977.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098]
Length = 191
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG--RKVNSERRFF 61
RWYIV YS E++ ++I + + L+ E+ +P+E+V+ K + S R+F+
Sbjct: 17 RWYIVHTYSGFEQRVQKTIKAMMDSGEDNGLIQEVVVPTEKVIEPSKNGSQPRTSTRKFY 76
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I+ +MTD H ++ PKV GF+G P+P+++S+ I++ +E+ + P
Sbjct: 77 PGYVMIRMIMTDLSCHLVQSIPKVTGFVGGKNRPTPMSESDAARILSLMESRQETPRPKF 136
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V +GPF FNG+V +V+ EK ++ V V IFGR TPVEL + QV K
Sbjct: 137 NFERGDDVRVIEGPFEGFNGVVDDVNYEKGKLRVSVSIFGRQTPVELDFVQVSK 190
>gi|268316663|ref|YP_003290382.1| NusG antitermination factor [Rhodothermus marinus DSM 4252]
gi|262334197|gb|ACY47994.1| NusG antitermination factor [Rhodothermus marinus DSM 4252]
Length = 186
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ +S EKK + + + R GL V +I IP+E V +R G+K ER FFPG
Sbjct: 12 KWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
Y+LI+AV+ ++ H I + P V+GFLG+G+ P+P+ E+ I+ +V+ A + +
Sbjct: 72 YILIEAVLDRELQHLIANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQPEIP 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V + +GPF +F G+V+ V +K ++ V V IFGR TP+E+ Y QVE+
Sbjct: 132 FKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184
>gi|330976628|gb|EGH76672.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 192
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H +KDTP+
Sbjct: 7 RVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHLVKDTPR 66
Query: 85 VIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+ GT + P+P+TD E E I+ +V +P FE GE V V+DGPFA FNG V
Sbjct: 67 VMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFADFNGTV 126
Query: 144 KNVDEEKSRVHVEVVIF 160
+ V+ EKSR+ V V+IF
Sbjct: 127 EEVNYEKSRIQVAVLIF 143
>gi|189502709|ref|YP_001958426.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498150|gb|ACE06697.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus
5a2]
Length = 186
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 17/187 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+WY+++V S EK + L R L V +I IPSE++ +R G++ ER FFP
Sbjct: 5 PKWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFP 64
Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLG-----TGENPSPVTDSEIEHIMNQVEA---- 112
GY+++ A ++D +V HTIKD P +GFLG + P P+ + EI I+ +V+
Sbjct: 65 GYLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAED 124
Query: 113 --AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+++P F VGE V + DGPF+ F G ++ V EE+ +++V V IF R TP+EL Y
Sbjct: 125 DNGLEKP-----FIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTY 179
Query: 171 NQVEKIV 177
QVEKI+
Sbjct: 180 TQVEKIL 186
>gi|269215893|ref|ZP_06159747.1| transcription termination/antitermination factor NusG [Slackia
exigua ATCC 700122]
gi|269130843|gb|EEZ61919.1| transcription termination/antitermination factor NusG [Slackia
exigua ATCC 700122]
Length = 181
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 5/181 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ +WY+V YS E K +++ R+ GL+ + +I IP+E V +++G R+V SE++
Sbjct: 1 MSKKWYVVHTYSGYENKVKQTLETRIEMYGLEDSIVDIQIPTETVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIM--NQVEAAVQR 116
P YVL++ M D+ + +++TP V GF+G PSP+T +E IM N A V
Sbjct: 61 VLPSYVLVRMEMNDRNWAVVRNTPGVTGFVGPESSTPSPLTRAEFNKIMHRNDASAGVAV 120
Query: 117 PV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P +S EVG+ V V+ GP A F+GIV V E +V V V IFGR TPVEL+++QV
Sbjct: 121 PKKTSTSLEVGQTVKVTSGPLAEFDGIVSEVSPEAGKVKVLVSIFGRETPVELSFDQVAS 180
Query: 176 I 176
I
Sbjct: 181 I 181
>gi|167627264|ref|YP_001677764.1| transcription antitermination protein NusG [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|241667819|ref|ZP_04755397.1| transcription antitermination protein NusG [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254876363|ref|ZP_05249073.1| transcription antitermination protein nusG [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|167597265|gb|ABZ87263.1| transcription antitermination protein NusG [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254842384|gb|EET20798.1| transcription antitermination protein nusG [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 177
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKTQLEENIEIAGLKENFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A +T + + IK P+V+ +G+ P P++ +E+E I+ VE + P
Sbjct: 63 VLIEANLTTEAWDIIKAVPRVLTVVGSRGKPIPLSKAEVERILGFVEGSTSTVEPRLRKT 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|206890987|ref|YP_002249161.1| transcription termination/antitermination factor NusG
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742925|gb|ACI21982.1| transcription termination/antitermination factor NusG
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 174
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V S E+K SI R+ GL+ ++ I IP+E+++ V+ +K E++F
Sbjct: 1 MAKQWYVVHTMSGFEEKVKASIEERVKTKGLEDKISRILIPTEKIIEVKGKKKKEQEKKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D +H I T +V GF+G G+ P+P+ E+E I+ Q+E + P
Sbjct: 61 YPGYILVEMELNDDTWHLISTTQRVTGFVG-GKKPAPIPQEEVEMILQQLEKG-RAPQIK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V ++DGPF +F G + VD E RV V V IFGR TPVELA++QVEK+
Sbjct: 119 AHFEKGETVRITDGPFTNFTGYIDEVDSEHERVKVMVSIFGRQTPVELAFSQVEKV 174
>gi|167041784|gb|ABZ06526.1| putative transcription termination factor nusG [uncultured marine
microorganism HF4000_093M11]
Length = 249
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q +S E + ++I +L GL+ LV EI IPSE V+ + G+K +++FPG
Sbjct: 74 KWYILQAFSGYEGRVEQTIQEKLKIEGLEDLVNEIFIPSEDVIRTKDGKKRKVNQKYFPG 133
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI +T ++H + + +V GF+ GT +NP P+ +SE+E I +QV Q+ S
Sbjct: 134 YVLIHMELTPVLWHLLMNVNRVSGFIGGTQKNPLPLDESELETIRSQVNERFQQKASEDE 193
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F +G++V +++G F +F+G++ ++ E+ ++ V V IFGR TPVE+ + +V+ +V
Sbjct: 194 FSLGQKVTITEGSFGNFSGVIDEINLERRKLKVLVSIFGRPTPVEVEFEKVKHVV 248
>gi|302390946|ref|YP_003826766.1| transcription antitermination protein nusG [Acetohalobium
arabaticum DSM 5501]
gi|302203023|gb|ADL11701.1| transcription antitermination protein nusG [Acetohalobium
arabaticum DSM 5501]
Length = 178
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
P WY + YS E K ++ R+ ++ + +I IPS+ V V+ +G K SE RFF
Sbjct: 6 PEWYAIHTYSGRENKVKSNLEQRIKTIDMEEKIIDILIPSKDEVKVKDEGEKKVSEERFF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVLIK +M D+ ++ +++TP VIGF G +G P PV+D E+ I N E +Q V
Sbjct: 66 PGYVLIKMIMDDESWYVVRNTPGVIGFAGASGTKPVPVSDPEVRTIKN--EMGLQSQVD- 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V V DGPF F G ++ ++ +KS++ V V +FGR TPVEL ++QVE I
Sbjct: 123 IDLEVGDEVRVVDGPFEDFAGEIQEINLDKSKLTVLVSMFGRQTPVELDFDQVEDI 178
>gi|300776006|ref|ZP_07085865.1| transcription termination/antitermination factor NusG
[Chryseobacterium gleum ATCC 35910]
gi|300505139|gb|EFK36278.1| transcription termination/antitermination factor NusG
[Chryseobacterium gleum ATCC 35910]
Length = 180
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + R G + VT++ IP E+V+ +R G+KV ER ++PG
Sbjct: 5 KWYVLKAISGQENKVKNYIETEIKRLGFEQYVTQVVIPMEKVIQIRNGKKVPKERPYYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
Y++I+A + ++ H IK+ P VI FL G +P P+ SE+ ++ +++ +
Sbjct: 65 YLMIEADLMGEIPHVIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFASDVE 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VGE V V DGPF FNG V+ + E+K ++ V V+IFGR TP+EL+Y QVEK+
Sbjct: 125 IPYVVGENVKVIDGPFNGFNGTVEKILEDKKKIEVSVLIFGRKTPMELSYMQVEKV 180
>gi|255534434|ref|YP_003094805.1| Transcription antitermination protein NusG [Flavobacteriaceae
bacterium 3519-10]
gi|255340630|gb|ACU06743.1| Transcription antitermination protein NusG [Flavobacteriaceae
bacterium 3519-10]
Length = 180
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 111/176 (63%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + G + VT++ IP E+V+ ++ G+KV E+ ++PG
Sbjct: 5 KWYVLKSISGQENKVKTYIENEMKHHGFEAFVTQVVIPMEKVIQLKNGKKVPKEKPYYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV-SS 120
Y++++A + ++ H IK+ P VI FL G +P P+ SE+ ++ +++ + V +S
Sbjct: 65 YLMVEANLVGEIPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFAVETS 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VGE V V DGPF FNG ++ + E+K +V V V+IFGR TP+EL+Y QVEK+
Sbjct: 125 IPFVVGENVKVIDGPFNGFNGTIEKLHEDKKKVEVSVMIFGRKTPMELSYMQVEKV 180
>gi|269837636|ref|YP_003319864.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745]
gi|269786899|gb|ACZ39042.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745]
Length = 200
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +++ R+ + + E+ +P++ V +R G++ + +R+ FPG
Sbjct: 29 QWYVVHTYSGYENKVRQNLLHRIETMDMADKIFEVVVPTQEEVEIRSGQRHSVQRKVFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +M D ++ +++TP V GF+G G P+P+ + E++ IM +EA + P V
Sbjct: 89 YVLVRMIMDDDSWYVVRNTPGVTGFVGMGNKPTPLGEDEVQAIMRGMEA--EAPRVKVSL 146
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ V + DGPF+ F G V +D+EK +V V V FGR TPV L + QVE+
Sbjct: 147 AVGDVVRIIDGPFSDFRGTVDEIDQEKGKVRVLVSFFGRETPVTLDFLQVER 198
>gi|323490600|ref|ZP_08095805.1| transcription antitermination protein NusG [Planococcus donghaensis
MPA1U2]
gi|323395692|gb|EGA88533.1| transcription antitermination protein NusG [Planococcus donghaensis
MPA1U2]
Length = 177
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G++ L+ + IP E+ + G+K R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVETMGMEDLIFRVIIPEEQETDFKDGKKRTVMRKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ D E+E I+ Q+ +R
Sbjct: 61 FPGYVLVELIMTDESWYVVRNTPGVTGFIGSSGGGAKPTPLLDEEVEFILKQM-GMTERK 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + F V + V V +GPFA+F G V+ +D+ K +V V + IFGR T +EL + QV+K+
Sbjct: 120 V-DIDFAVADTVEVMEGPFANFQGKVEEIDDTKGKVKVSIDIFGRETKMELDFEQVQKV 177
>gi|295106904|emb|CBL04447.1| transcription antitermination protein nusG [Gordonibacter pamelaeae
7-10-1-b]
Length = 180
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ +WY++ YS E K +++ R+ GL++ V I IP+E V +++G R+V SE++
Sbjct: 1 MSKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFAIEIPTEMVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-- 117
FPGYVL++ + D+ + +++TP V GF+G+ NP+P+T E IM + + RP
Sbjct: 61 VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQGNPAPLTRDEYNKIMG-MRSDKNRPGT 119
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+S EVG+ V V GP A F+G+V V + +V V V IFGR TPVEL+++Q+ K
Sbjct: 120 PKKTSSSIEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVLVSIFGRETPVELSFDQIAK 179
Query: 176 I 176
I
Sbjct: 180 I 180
>gi|251772654|gb|EES53218.1| transcription antitermination protein (NusG) [Leptospirillum
ferrodiazotrophum]
Length = 177
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 102/171 (59%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E K ++ G R G++ + + +P++ V ++G+K S R+ FPGY
Sbjct: 6 WFVLHTYAGFENKVKTALEGLRERGGIEDGIGIVLVPTQNVTEFKEGKKKVSTRKVFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI+ T++V+H +K PKV GFLG P P+T +E+ + +++E P +S +
Sbjct: 66 VLIEMEPTEEVFHYVKSVPKVTGFLGNKGKPQPMTATEVNELFHRIEEGTAMPAASEQYF 125
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + ++DGPF F G + VD E +V V V IFGR TPVEL + Q+E+
Sbjct: 126 EGDSIRITDGPFQGFTGAISGVDSEHGKVRVLVSIFGRQTPVELDFLQIER 176
>gi|167043576|gb|ABZ08271.1| putative transcription termination factor nusG [uncultured marine
microorganism HF4000_APKG2K17]
Length = 272
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E + ++I +L G++HLV EI IPSE ++ ++G+K +++FPG
Sbjct: 97 KWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQKYFPG 156
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI +T +++H + + +V GF+ GT + P P+ + E+E I +QV Q+ +
Sbjct: 157 YVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQKATEDE 216
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ VG++V +++G F +F+G + V+ E+ ++ V V IFGR TPVE+ + V+ +V
Sbjct: 217 YSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVKHVV 271
>gi|320161301|ref|YP_004174525.1| transcription antitermination protein NusG [Anaerolinea thermophila
UNI-1]
gi|319995154|dbj|BAJ63925.1| transcription antitermination protein NusG [Anaerolinea thermophila
UNI-1]
Length = 226
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 105/171 (61%), Gaps = 3/171 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K ++ R+ G+ + ++ IP++ + V+ G++ ER FPGY
Sbjct: 58 WYVVHCYSGYENKVRHNLEQRIETMGMKDKIFDVVIPTQEEIEVKDGKRRTVERHVFPGY 117
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ +MT++ ++ +++TP V GF+G + P+P+ E+ I+ ++EA P V F+
Sbjct: 118 VLVNMIMTEESWYVVRNTPGVTGFVGM-DQPTPLRPEEVAQILKRMEAEA--PRVKVTFK 174
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VGERV + DGPF F G V +D E+++V V V FGR TPVEL + QVEK
Sbjct: 175 VGERVRIVDGPFNDFRGTVSEIDMERNKVRVMVNFFGRETPVELDFLQVEK 225
>gi|256819266|ref|YP_003140545.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271]
gi|315224709|ref|ZP_07866532.1| transcription termination/antitermination factor NusG
[Capnocytophaga ochracea F0287]
gi|256580849|gb|ACU91984.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271]
gi|314945337|gb|EFS97363.1| transcription termination/antitermination factor NusG
[Capnocytophaga ochracea F0287]
Length = 183
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ + E K I SR G V E+ +P+E+VV VR G+K +R PG
Sbjct: 8 KWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKTTKDRVHMPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YV++K + +V H IK P V+GFL G +P P+ +++ ++ QV E A +
Sbjct: 68 YVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVSRMLGQVDELAETVETVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V + DGPF FN ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 128 IPFEVGEMVKLIDGPFNGFNATIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183
>gi|126640370|ref|YP_001083354.1| transcription antitermination protein [Acinetobacter baumannii ATCC
17978]
Length = 160
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPGYVL++ M D +H
Sbjct: 1 MRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPGYVLVEMEMNDDTWHI 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+K+ PKV+GF+G T E P+P+T E + I+ +V + P FE GE + V DGPF
Sbjct: 61 VKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTMFEPGEELLVIDGPFT 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 121 DFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 160
>gi|326799806|ref|YP_004317625.1| NusG antitermination factor [Sphingobacterium sp. 21]
gi|326550570|gb|ADZ78955.1| NusG antitermination factor [Sphingobacterium sp. 21]
Length = 181
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I ++R G++HLV ++ IP E+ +R+G+K+ ER ++PG
Sbjct: 7 KWYVVRAVSGKEKKVKQYIEAEINRLGINHLVPQVLIPMEKYFQMREGKKIAKERNYYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVL++A + ++ H IK+ VIGFLG N P+ +E+ I+ V E + Q + +V
Sbjct: 67 YVLLEAALDGELEHVIKNINSVIGFLGDKAGNAIPLRQAEVNRILGTVDEMSEQGEMMNV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF F+G ++ V+EEK ++ V V +FGR TP+EL Y QVEK
Sbjct: 127 PYYVGESVKVTDGPFNGFSGEIEEVNEEKKKLKVMVKVFGRKTPLELNYMQVEK 180
>gi|332184687|gb|AEE26941.1| Transcription antitermination protein NusG [Francisella cf.
novicida 3523]
Length = 177
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A ++ ++ +K P+V+ +G+ P P++ +E+E I+ VE + P
Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVERILGFVEGSKSTVEPRLRKS 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|193213527|ref|YP_001999480.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327]
gi|193087004|gb|ACF12280.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327]
Length = 191
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 102/172 (59%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++YS E+K E I R GL + ++ IP ER V V+ G+K + + FPGY
Sbjct: 18 WYALRIYSGHERKVKEGIEMEAERHGLVDKIKQVYIPYERFVEVKNGKKRSLTKNAFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V F+
Sbjct: 78 VLLEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPESAVEHRAVVEAPFK 137
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF+S GIV V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 138 VGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKSV 189
>gi|303237461|ref|ZP_07324026.1| transcription termination/antitermination factor NusG [Prevotella
disiens FB035-09AN]
gi|302482281|gb|EFL45311.1| transcription termination/antitermination factor NusG [Prevotella
disiens FB035-09AN]
Length = 181
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I L ++ L V E+ +P+E S+R G++V +E+ P
Sbjct: 7 KWYVLRAVSGKEAKVKEYIDAELRQNAKLAERVFEVLLPTESHASLRNGKRVVTEKLSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++A+M +V T++ P V+GFLG P+PV +E+ ++ VE V +
Sbjct: 67 GYVLVEAIMNSEVASTLRFMPNVLGFLGGVAEPTPVRQAEVNRLLGNVEDTALEEVQDIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 YTVGESVKVTDGPFSGFHGIIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 179
>gi|198277431|ref|ZP_03209962.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135]
gi|198269929|gb|EDY94199.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135]
Length = 180
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + L V+++ IP+E+ VR G+K+ ER + PG
Sbjct: 7 KWYVLRAVSGKENKVKEYLDADIKHGNLGDYVSQVLIPTEKTYQVRNGKKIVKERTYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++TP VIGFLG ++P P+ SE+ I+ V+ + ++
Sbjct: 67 YVLVEAALVGEVAHHLRNTPNVIGFLGGLDHPVPLRQSEVNRILGTVDELQESGEDLNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V VS GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 127 YTVGETVKVSVGPFSGFSGLIEEVNAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|268678989|ref|YP_003303420.1| transcription termination/antitermination factor NusG
[Sulfurospirillum deleyianum DSM 6946]
gi|268617020|gb|ACZ11385.1| transcription termination/antitermination factor NusG
[Sulfurospirillum deleyianum DSM 6946]
Length = 176
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E+ + I ++ G+ + +I +P+E V+ V+ G+K SER
Sbjct: 1 MAHKWYAIQTYAGSEQAVKKGIITLVNDHGIAEKLEQIVVPTEDVIEVKNGKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY K + ++H I+ PKV F+G + P+P+T+ +I I+ + E P
Sbjct: 61 YPGYAFAKLDLDTALWHLIQSLPKVGRFIGESKKPTPLTEKDIALILEKAEKK-GAPKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V +++GPFA+F G V+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IFFETGESVRITEGPFANFTGSVEEYDMVHGKLTLNVSIFGRSTPVEILYSQVEKIV 176
>gi|255037208|ref|YP_003087829.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053]
gi|254949964|gb|ACT94664.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053]
Length = 184
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 108/177 (61%), Gaps = 6/177 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++++ S EKK I ++R L+ V +I IPSE++ +R G+K E+ FFPGY
Sbjct: 6 WFVLRAVSGQEKKIKSYIENEITRQKLNEFVPQILIPSEKIYEMRNGKKRVREKNFFPGY 65
Query: 65 VLIKAVMTD-KVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIMNQVEAAVQRP-V 118
++I A ++ +V H I P VIGFLG E P P+ SEI I+ +V+ A Q
Sbjct: 66 IIISADLSKGEVLHIITSIPGVIGFLGNAEGNSKVPVPLRQSEINRILGKVDEAEQHEEA 125
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ F GE V V DGPF+ F G+V+ V +EK +++V V IFGR TPVEL+Y QVEK
Sbjct: 126 PSMSFIKGETVKVVDGPFSGFIGLVEEVFDEKKKLNVVVKIFGRNTPVELSYAQVEK 182
>gi|166366402|ref|YP_001658675.1| transcription antitermination protein NusG [Microcystis aeruginosa
NIES-843]
gi|166088775|dbj|BAG03483.1| transcription antitermination protein [Microcystis aeruginosa
NIES-843]
Length = 205
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CEK+ ++ R+ + + ++ IP V VRK G + + E + F
Sbjct: 21 PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQAATVKVRKDGSRQHGEEKVF 80
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVLIK +M D + +K+TP VI F+G + P P++ SE++ I Q
Sbjct: 81 PGYVLIKMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQ- 139
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A +Q PV + EVG+++ V GPF F G V V E+ ++ + IFGR TPVEL +
Sbjct: 140 -AQIQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEF 198
Query: 171 NQVEK 175
NQVEK
Sbjct: 199 NQVEK 203
>gi|152990012|ref|YP_001355734.1| transcription antitermination protein NusG [Nitratiruptor sp.
SB155-2]
gi|151421873|dbj|BAF69377.1| transcriptional antitermination factor NusG [Nitratiruptor sp.
SB155-2]
Length = 176
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +QVYS EK ++I L + E+ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHKWYAIQVYSGSEKAVKKAIENLAEEENLKDRIKEVVVPTEDVIEVKSGKKKITERSI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV + ++ I+ PKV F+G + P+P++++++ IM + E P
Sbjct: 61 YPGYVFANMDLDIDLWQKIQSLPKVSRFIGESKKPTPISEADVRKIMEKAEKK-GAPKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ +E GE V +++GPFA+F G+V+ D E ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 ISYEPGEMVRITEGPFANFTGVVEEYDMEHGKLKLNVSIFGRSTPVEILYTQVEKII 176
>gi|297618398|ref|YP_003703557.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM
12680]
gi|297146235|gb|ADI02992.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM
12680]
Length = 195
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ R++ +++ + ++ IP E V + G+K +++R FPG
Sbjct: 25 RWYVVHTYSGYENKVKANLEKRVASMNMENQIFQVLIPEEDEVEYKGGQKKVTKKRIFPG 84
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +MTD + T++ TP V GF+G+G P P+ E++ I+ + +P V
Sbjct: 85 YVLVEMIMTDDSWVTVRHTPGVTGFVGSGTKPIPLQPHEVQKILKHMGMLETKPKIDV-- 142
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V GPF +F G+VK + ++ ++ V + +FGR TPVEL Y QVEK+
Sbjct: 143 EVGEYVRVKSGPFENFEGMVKEILADRGKLRVNISMFGRETPVELDYEQVEKL 195
>gi|189460672|ref|ZP_03009457.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136]
gi|189432631|gb|EDV01616.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136]
Length = 180
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAVSGKESKVKEYLEAEMRNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122
YVL++A + +V H +++ VIGFLG E+P P+ SE+ I+ V+ + +++
Sbjct: 67 YVLVEAALVGEVAHHLRNITNVIGFLGGQEHPVPLRQSEVNRILGTVDELQEVSEDTNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V VS GPF+ F+GI++ V EK ++ V V IFGR TP+EL + VEK
Sbjct: 127 YTVGETVKVSVGPFSGFSGIIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|194337666|ref|YP_002019460.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
gi|194310143|gb|ACF44843.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
Length = 191
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 102/173 (58%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY +++YS E+K E+I + R GL + +I +P ER V V+ G+K + + FPG
Sbjct: 17 RWYALRIYSGHERKVKEAIDADVIRCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI+AV+ + + I D P V+GFLG + P+P+ E+E I+ R V F
Sbjct: 77 YVLIEAVLDKQTRNLILDIPSVMGFLGVDDVPTPLRPEEVEKILEPESTIEHRSVVEAPF 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 137 RIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|269926929|ref|YP_003323552.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798]
gi|269790589|gb|ACZ42730.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798]
Length = 201
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R+ G+ + +I +P+ + +R+G++ +++ FPG
Sbjct: 29 QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ M D ++ ++ TP V GF+G+G P+P+ + E+E I+ ++ + + P +
Sbjct: 89 YVLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRM--SEEPPKVKMSL 146
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+GE V + DGPF F G V ++EEK +V V + IFGR TPVEL + QVEKIV
Sbjct: 147 RLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEKIV 200
>gi|224372227|ref|YP_002606599.1| transcription antitermination protein NusG [Nautilia profundicola
AmH]
gi|223589544|gb|ACM93280.1| transcription termination/antitermination factor NusG [Nautilia
profundicola AmH]
Length = 174
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 7/176 (3%)
Query: 5 WYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY +QVYS E KKA+E++ L+ L ++ E+ +P+E V+ V+ G+K ER +
Sbjct: 3 WYALQVYSGSELSVKKAIENLKNELN---LHDVIGEVIVPTEEVIEVKNGKKKIFERSIY 59
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++A + +++H I+ PKV F+G + P+P+ +IE I+ + + P V
Sbjct: 60 PGYVFLEADLDTELWHKIQSLPKVGRFIGESKKPTPLKKEDIELILEKAKTKTA-PKPKV 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F G V++ D EK + + V IFGR TPVE+ Y +VEKIV
Sbjct: 119 SFEEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 174
>gi|56707309|ref|YP_169205.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110669779|ref|YP_666336.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis FSC198]
gi|134301348|ref|YP_001121316.1| transcription termination factor NusG [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187931078|ref|YP_001891062.1| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. mediasiatica FSC147]
gi|56603801|emb|CAG44772.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320112|emb|CAL08155.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis FSC198]
gi|134049125|gb|ABO46196.1| transcription termination factor NusG [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187711987|gb|ACD30284.1| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. mediasiatica FSC147]
gi|282158434|gb|ADA77825.1| transcription termination factor NusG [Francisella tularensis
subsp. tularensis NE061598]
Length = 177
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I++ VE + P
Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKS 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|193214885|ref|YP_001996084.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110]
gi|193088362|gb|ACF13637.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110]
Length = 203
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 105/171 (61%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V+ YS E+K E + ++ +G+ + ++ IP ER V V+ G+K + + FPG
Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI+AV+ + + + D P VIGFLG G+ P+P+ E++ ++ + ++ V+ F
Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLGVGDEPTPLRPDEVKRLLEPEQEIERKMVTKAPF 148
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
EVG V + DGPF S G+++ V+ EK +V V + FGR TP E+ ++QV+
Sbjct: 149 EVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVK 199
>gi|89257018|ref|YP_514380.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica LVS]
gi|115315379|ref|YP_764102.1| transcription antitermination protein NusG [Francisella tularensis
subsp. holarctica OSU18]
gi|118498141|ref|YP_899191.1| transcription antitermination protein nusG [Francisella tularensis
subsp. novicida U112]
gi|167009399|ref|ZP_02274330.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica FSC200]
gi|169656748|ref|YP_001429284.2| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|89144849|emb|CAJ80188.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica LVS]
gi|115130278|gb|ABI83465.1| transcription antitermination protein NusG [Francisella tularensis
subsp. holarctica OSU18]
gi|118424047|gb|ABK90437.1| transcription antitermination protein nusG [Francisella novicida
U112]
gi|164551816|gb|ABU62328.2| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. holarctica FTNF002-00]
Length = 177
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I+ VE + P
Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSKSTVEPRLRKS 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|206602630|gb|EDZ39111.1| Transcription antitermination protein (NusG) [Leptospirillum sp.
Group II '5-way CG']
Length = 184
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 103/173 (59%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E + SI R+ L +V ++ +P + V +++G+K S R+ FPG
Sbjct: 12 KWYVIHTYAGFENRVKTSIEERVILKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ T++ I TPKV GFLG G P P+++ E+ + +++E+ P S F
Sbjct: 72 YVLVEMEPTEEAIQFILSTPKVTGFLGNGTTPIPMSNREVSELFDRIESGTAMPSPSQHF 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E V ++DGPF F+G++ VD + ++ V V IFGR TPVEL + QVE++
Sbjct: 132 SEAETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184
>gi|159028397|emb|CAO89839.1| nusG [Microcystis aeruginosa PCC 7806]
Length = 205
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CEK+ ++ R+ + + ++ IP V VRK G + + E + F
Sbjct: 21 PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQSATVKVRKDGSRQHGEEKVF 80
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVLI+ +M D + +K+TP VI F+G + P P++ SE++ I Q
Sbjct: 81 PGYVLIRMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
E +Q PV + EVG+++ V GPF F G V V E+ ++ + IFGR TPVEL +
Sbjct: 141 E--IQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEF 198
Query: 171 NQVEK 175
NQVEK
Sbjct: 199 NQVEK 203
>gi|148657431|ref|YP_001277636.1| NusG antitermination factor [Roseiflexus sp. RS-1]
gi|148569541|gb|ABQ91686.1| transcription antitermination protein nusG [Roseiflexus sp. RS-1]
Length = 194
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +++ R+ + + + +P+E + ++ G++ +++ FPG
Sbjct: 22 RWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ M D ++ +++TP V F+G G P+P+ +SE++ I+ Q+E P V +
Sbjct: 82 YVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEESEVKAILRQMEQEA--PKVKVSY 139
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+VG+ V ++DGPF F G+V +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 140 QVGQAVKITDGPFTDFEGVVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193
>gi|149195233|ref|ZP_01872323.1| transcription antitermination protein NusG [Caminibacter
mediatlanticus TB-2]
gi|149134666|gb|EDM23152.1| transcription antitermination protein NusG [Caminibacter
mediatlanticus TB-2]
Length = 179
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+WY +QVYS E KKA+E++ L L+ + +I +P+E V+ V+ G+K ER
Sbjct: 7 KWYALQVYSGSELAVKKAIENLKKELH---LEDKIGQIIVPTEEVIEVKNGKKKIFERSI 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV ++A + ++H I+ PKV F+G + P+P+ +IE I+ + + P
Sbjct: 64 YPGYVFLEADLDTALWHKIQSLPKVGRFIGESKKPTPLKKEDIELILQKAKQKTA-PKPK 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V +++GPFA+F G V++ D EK + + V IFGR TPVE+ Y +VEKIV
Sbjct: 123 VSFEEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 179
>gi|295401934|ref|ZP_06811897.1| NusG antitermination factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|312109247|ref|YP_003987563.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1]
gi|294976064|gb|EFG51679.1| NusG antitermination factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|311214348|gb|ADP72952.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1]
Length = 177
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G+ + I +P E + G+K ++R+
Sbjct: 1 MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETETKSGKKKAAKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E+E I+ ++ +Q
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRM--GMQLA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE ++Q+EKI
Sbjct: 119 ELDVDYELKETVRVKEGPFANFTGTIEEIDVDKRKVKVLVNMFGRETPVEFEFSQIEKI 177
>gi|297625760|ref|YP_003687523.1| Transcription antitermination protein NusG [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921525|emb|CBL56079.1| Transcription antitermination protein NusG [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 295
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 12/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E + ++I R+ ++ + E +P+E V +RKG++ R F PG
Sbjct: 109 EWYVVHTYSGMENRVKQNIDNRVKSLNMEDYIYETVVPTEDAVEMRKGQRKKVTRVFMPG 168
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-----QVEA------ 112
YVL++ MTD+ + T++ TP V GF+G G+ P+P+ SE+EH++ QV A
Sbjct: 169 YVLVRMEMTDESWSTVRHTPSVTGFVGQGQTPAPLDLSEVEHMLTPSVTAQVVASGEAKA 228
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A Q V V + VG++V V DGPFA + + ++ R+ +V I GR TPV+L +
Sbjct: 229 GADQEKVEVVDYAVGDQVMVIDGPFAGVHATITEINTHNQRLKADVEILGRETPVDLTFP 288
Query: 172 QVEKIV 177
Q++K++
Sbjct: 289 QIQKVI 294
>gi|301168471|emb|CBW28061.1| putative transcription antitermination protein [Bacteriovorax
marinus SJ]
Length = 211
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+I + + E K ++ R+ +EI +P E V S GRK +++ FPG
Sbjct: 39 KWFIAKTLTGQEGKVQRALRERIVNYKQTEFFSEIMVPEETVTSHANGRKRTIKKKLFPG 98
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIK +M D +H +KDT K+ GF+ GT + P+P++D E ++ Q ++ ++V
Sbjct: 99 YVLIKMIMNDNTWHLVKDTDKITGFVGGTSDKPAPISDEEAAYMTGQQGEGFKKSKTTVD 158
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPFASF G V+ + EK ++ V V IFGR TPVEL + Q+EK
Sbjct: 159 FAEGETVKVIEGPFASFVGTVEAIS-EKGKIRVNVSIFGRPTPVELDFTQIEK 210
>gi|34556887|ref|NP_906702.1| transcription antitermination protein NusG [Wolinella succinogenes
DSM 1740]
gi|34482602|emb|CAE09602.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Wolinella succinogenes]
Length = 176
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY +Q YS E+ +I + + ++ + +I +P+E ++ V+ +K +ER
Sbjct: 1 MSFDWYAIQTYSGSEQSVKRAIENLIRENKIEDRLEQIVVPTEDIIEVKNNKKKITERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV IK + +++H I+ P+V F+G + P+P+++++I I+ +V+ P
Sbjct: 61 YPGYVFIKVSLDTELWHLIQSLPRVGRFIGEAKKPTPLSEADINTILEKVKNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V +++GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 VSFEAGEVVRITEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|260592783|ref|ZP_05858241.1| transcription termination/antitermination factor NusG [Prevotella
veroralis F0319]
gi|260535314|gb|EEX17931.1| transcription termination/antitermination factor NusG [Prevotella
veroralis F0319]
Length = 181
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I +L ++ L V E+ +P E+ ++R G++V E+ P
Sbjct: 7 KWYVLRAVSGKEAKVKEYIDAQLRQNDKLAERVFEVLLPMEKHATLRNGKRVVKEKLSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V V
Sbjct: 67 GYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEETELDEVQDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF+ F+G+++ ++ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 YEVGETVKVTDGPFSGFHGVIEEMNAEKHKLKVMVMIFGRQNPLELSFMQVAK 179
>gi|325926955|ref|ZP_08188233.1| transcription antitermination protein nusG [Xanthomonas perforans
91-118]
gi|325542667|gb|EGD14131.1| transcription antitermination protein nusG [Xanthomonas perforans
91-118]
Length = 156
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 10/155 (6%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK---------AVMTDKVYHTIKD 81
++ ++ +P+E V+ +R G+K SER+FFPGYVL++ + ++ +H +K+
Sbjct: 1 MEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEGGIPRIDNESWHLVKE 60
Query: 82 TPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFN 140
T KV+GF+G T + P P+ D E + I+ +V+ V++P V FE G+ V V++GPF FN
Sbjct: 61 TSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTEGPFNDFN 120
Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 GVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 155
>gi|313206995|ref|YP_004046172.1| transcription antitermination protein nusg [Riemerella
anatipestifer DSM 15868]
gi|312446311|gb|ADQ82666.1| transcription antitermination protein nusG [Riemerella
anatipestifer DSM 15868]
gi|315024071|gb|EFT37073.1| Transcription antitermination protein NusG [Riemerella
anatipestifer RA-YM]
gi|325335571|gb|ADZ11845.1| Transcription antiterminator [Riemerella anatipestifer RA-GD]
Length = 180
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + R L+ V++I IP E+ + +R G+KV E+ ++PG
Sbjct: 5 KWYVLKAVSGQENKVKSYIENEIQRFKLEDFVSQIVIPMEKTIQMRNGKKVQKEKPYYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
Y++++A + +V H IK+ P VI FL G +P P+ SE+ ++ +++ Q
Sbjct: 65 YLMVEANLKGEVPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSQFATDVD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VGE V V DGPF FNG ++ + E+K ++ V V+IFGR TP+EL Y QVEKI
Sbjct: 125 IPYVVGESVKVIDGPFNGFNGTIEKIHEDKKKLEVMVLIFGRKTPLELNYMQVEKI 180
>gi|256827385|ref|YP_003151344.1| transcription antitermination protein nusG [Cryptobacterium curtum
DSM 15641]
gi|256583528|gb|ACU94662.1| transcription antitermination protein nusG [Cryptobacterium curtum
DSM 15641]
Length = 178
Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M +WY++ YS E K +++ R+ GL++ V +I IP E V ++ G R+V S+++
Sbjct: 1 MAKKWYVLHTYSGYENKVKKNLESRIETMGLENNVFDIQIPMETVTEIKDGGRRVESDKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-- 117
PGYVL++ + D+ + +++TP V GF+G+ NP+P+T E IM + + A R
Sbjct: 61 VLPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQANPAPLTREEYNKIMKRTDHADTRKAV 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V+S E G+ V V GP A F+G+V V E ++V V V IFGR TPVEL+++QV ++
Sbjct: 121 VTSDLAE-GQTVKVVSGPLADFDGVVSEVSPEANKVKVLVSIFGRETPVELSFDQVTRL 178
>gi|154148460|ref|YP_001407185.1| transcription antitermination protein NusG [Campylobacter hominis
ATCC BAA-381]
gi|153804469|gb|ABS51476.1| transcription termination/antitermination factor NusG
[Campylobacter hominis ATCC BAA-381]
Length = 176
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
Query: 1 MTPRWYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
M +WY +Q Y+ E K+A+ES+ L GL+ + EI +P+E ++ ++ ++
Sbjct: 1 MALKWYAIQTYAGSEMAVKRAIESMATDL---GLEEQIGEILVPTEDIIEIKNQKETIRS 57
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
R +PGY + ++H I+ PKV F+G + PSP+++ +I I+ +V P
Sbjct: 58 RSLYPGYCFANLDLDTALWHRIQMLPKVSRFIGEAKRPSPLSEKDINLILEKVNKK-DAP 116
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++FE GE V + DGPFA+FNGIV+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 117 KPKIYFEQGETVRIIDGPFANFNGIVEEYDMLHGKLRLNVSIFGRSTPVEILYSQVEKIV 176
>gi|156744234|ref|YP_001434363.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941]
gi|156235562|gb|ABU60345.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941]
Length = 194
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +++ R+ + + + +P+E + ++ G++ +++ FPG
Sbjct: 22 RWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ M D ++ +++TP V F+G G P+P+ + E++ I+ Q+E P V +
Sbjct: 82 YVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEEEEVKAILKQMEQEA--PKVKVSY 139
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+VG+ V ++DGPF F GIV +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 140 QVGQAVKITDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193
>gi|304384444|ref|ZP_07366848.1| transcription termination/antitermination factor NusG [Prevotella
marshii DSM 16973]
gi|304334464|gb|EFM00753.1| transcription termination/antitermination factor NusG [Prevotella
marshii DSM 16973]
Length = 180
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+++ S E K E I L + L V+++ IP ER ++R G+++ E+ P
Sbjct: 7 RWYVLRAVSGKEAKVKEYIEAELKHNALLSSHVSQVLIPLERHTALRNGKRIVKEKISLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV I+A + + H ++ P V+GFLG ENP+PV SEI ++ E + +
Sbjct: 67 GYVFIEADLNGDIAHLLRFMPNVLGFLGGMENPTPVQQSEINRMLGNAEESELMYEADNP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V DGPF+ FNGI++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YAVNESVKVCDGPFSGFNGIIEEVNAEKRKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|312130984|ref|YP_003998324.1| transcription antitermination protein nusg [Leadbetterella
byssophila DSM 17132]
gi|311907530|gb|ADQ17971.1| transcription antitermination protein nusG [Leadbetterella
byssophila DSM 17132]
Length = 184
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V+ S EKK I +R L + E+ IP+E+++ VR G+K E+ FFPGY
Sbjct: 6 WYVVRAVSQQEKKIKNYIENEAARRKLTDFIPEVLIPTEKIIEVRNGKKRVREKNFFPGY 65
Query: 65 VLIKAVMTD-KVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIMNQVEAAVQRPVS 119
+L+ A + + +V H IK P VIGFLG P P+ SE+ I+ +A + +
Sbjct: 66 ILVNADLNNGEVLHLIKSIPGVIGFLGKNGGASIEPEPLRQSEVNRILGVQDAPQEEAID 125
Query: 120 S-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V F GE V V DGPF F G V+ + +EK ++ V V IFGR TPVEL Y QVEK+
Sbjct: 126 AGVSFVTGETVKVIDGPFNGFEGTVEEIFDEKKKLSVSVKIFGRSTPVELGYLQVEKL 183
>gi|219848385|ref|YP_002462818.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485]
gi|219542644|gb|ACL24382.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485]
Length = 187
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +++ R++ + + + +P+E + ++ G++ ++ +PG
Sbjct: 15 RWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +TD ++ +++TP V F+G G P+P+ D E++ I+ Q+E + P V +
Sbjct: 75 YVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQMEG--ETPKVRVSY 132
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ G+ V + DGPF F GIV ++D E+ RV V V FGR PVEL + QV K+V
Sbjct: 133 QKGQAVKIIDGPFTDFEGIVDSIDHERGRVRVLVSFFGREAPVELDFLQVTKLV 186
>gi|16802292|ref|NP_463777.1| transcription antitermination protein NusG [Listeria monocytogenes
EGD-e]
gi|46906479|ref|YP_012868.1| transcription antitermination protein NusG [Listeria monocytogenes
str. 4b F2365]
gi|47094614|ref|ZP_00232254.1| transcription antitermination factor NusG [Listeria monocytogenes
str. 4b H7858]
gi|217965667|ref|YP_002351345.1| transcription termination/antitermination factor NusG [Listeria
monocytogenes HCC23]
gi|224498908|ref|ZP_03667257.1| transcription antitermination protein NusG [Listeria monocytogenes
Finland 1988]
gi|224502460|ref|ZP_03670767.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL R2-561]
gi|226222874|ref|YP_002756981.1| transcription antitermination factor [Listeria monocytogenes
Clip81459]
gi|254825710|ref|ZP_05230711.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-194]
gi|254828706|ref|ZP_05233393.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL N3-165]
gi|254831929|ref|ZP_05236584.1| transcription antitermination protein NusG [Listeria monocytogenes
10403S]
gi|254853487|ref|ZP_05242835.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL R2-503]
gi|254900573|ref|ZP_05260497.1| transcription antitermination protein NusG [Listeria monocytogenes
J0161]
gi|254913476|ref|ZP_05263488.1| transcription antitermination factor NusG [Listeria monocytogenes
J2818]
gi|254932465|ref|ZP_05265824.1| transcription antitermination protein NusG [Listeria monocytogenes
HPB2262]
gi|254937943|ref|ZP_05269640.1| transcription antitermination protein NusG [Listeria monocytogenes
F6900]
gi|254991754|ref|ZP_05273944.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-064]
gi|255026643|ref|ZP_05298629.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-003]
gi|255030086|ref|ZP_05302037.1| transcription antitermination protein NusG [Listeria monocytogenes
LO28]
gi|255520310|ref|ZP_05387547.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-175]
gi|284800540|ref|YP_003412405.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5578]
gi|284993726|ref|YP_003415494.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5923]
gi|290892613|ref|ZP_06555606.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-071]
gi|300764629|ref|ZP_07074621.1| transcription antitermination factor NusG [Listeria monocytogenes
FSL N1-017]
gi|315274839|ref|ZP_07869502.1| transcription termination/antitermination factor NusG [Listeria
marthii FSL S4-120]
gi|16409611|emb|CAD00773.1| transcription antitermination factor [Listeria monocytogenes EGD-e]
gi|46879743|gb|AAT03045.1| transcription antitermination factor NusG [Listeria monocytogenes
serotype 4b str. F2365]
gi|47017011|gb|EAL07904.1| transcription antitermination factor NusG [Listeria monocytogenes
str. 4b H7858]
gi|217334937|gb|ACK40731.1| transcription termination/antitermination factor NusG [Listeria
monocytogenes HCC23]
gi|225875336|emb|CAS04033.1| transcription antitermination factor [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258601111|gb|EEW14436.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL N3-165]
gi|258606859|gb|EEW19467.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL R2-503]
gi|258610552|gb|EEW23160.1| transcription antitermination protein NusG [Listeria monocytogenes
F6900]
gi|284056102|gb|ADB67043.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5578]
gi|284059193|gb|ADB70132.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5923]
gi|290557922|gb|EFD91443.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-071]
gi|293584021|gb|EFF96053.1| transcription antitermination protein NusG [Listeria monocytogenes
HPB2262]
gi|293591484|gb|EFF99818.1| transcription antitermination factor NusG [Listeria monocytogenes
J2818]
gi|293594954|gb|EFG02715.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-194]
gi|300514736|gb|EFK41791.1| transcription antitermination factor NusG [Listeria monocytogenes
FSL N1-017]
gi|307569785|emb|CAR82964.1| transcription antitermination factor [Listeria monocytogenes L99]
gi|313611163|gb|EFR85988.1| transcription termination/antitermination factor NusG [Listeria
monocytogenes FSL F2-208]
gi|313615704|gb|EFR88994.1| transcription termination/antitermination factor NusG [Listeria
marthii FSL S4-120]
gi|328467855|gb|EGF38895.1| transcription antitermination protein NusG [Listeria monocytogenes
1816]
gi|328476087|gb|EGF46796.1| transcription antitermination protein NusG [Listeria monocytogenes
220]
Length = 177
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKRA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 121 EAD--FEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177
>gi|325299607|ref|YP_004259524.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170]
gi|324319160|gb|ADY37051.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170]
Length = 180
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E I + + L V+++ IP+E+V VR G+K+ ER + PG
Sbjct: 7 KWYVLRAVSGKEAKVKEYIEAEMRNTELGEYVSQVLIPTEKVYQVRNGKKIVKERSYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---S 120
YVLI+A + +V H +++ VIGFLG ++P P+ SE+ I+ V+ + VS +
Sbjct: 67 YVLIEAALVGEVAHQLRNITNVIGFLGGLDHPVPLRQSEVNRILGTVDEL--QEVSEDMN 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V VS GPF+ F+G+++ V EK ++ V V IFGR TP+EL + VEK
Sbjct: 125 VPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|114567855|ref|YP_755009.1| NusG antitermination factor [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338790|gb|ABI69638.1| transcription antitermination protein nusG [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 203
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K + R+ + + E+ IP E+ V + G++ + +R FPGY
Sbjct: 33 WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V++ +M D ++ ++ TP V GF+G+G P P+ EI+ I Q+ +++ + E
Sbjct: 93 VIVNMIMDDDSWYVVRHTPGVTGFVGSGSKPIPLHQEEIDKIRRQM-GLMEKKTMIIDIE 151
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GE + V GPFA+F G+V+ + EK ++ V + +FGR TPVEL Y Q+EKI
Sbjct: 152 IGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEKI 203
>gi|89893200|ref|YP_516687.1| hypothetical protein DSY0454 [Desulfitobacterium hafniense Y51]
gi|219666473|ref|YP_002456908.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2]
gi|89332648|dbj|BAE82243.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536733|gb|ACL18472.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2]
Length = 175
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT WY++ YS E K ++ R+ ++ + + +P E + ++ G+K ++R+
Sbjct: 1 MTKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEIKNGKKKIAKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ MTD ++ +++TP V GF+GTG P P+ D E++ I+ Q+ V+ +
Sbjct: 61 FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGTGAKPIPLLDHEVQAILKQM--GVEEVRTR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + VG+ V V GPF F V+ + E+K ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 VDYTVGQNVRVISGPFKDFIASVREILEDKGKLRVSVSMFGRETPVELDFAQVEKV 174
>gi|288801076|ref|ZP_06406532.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 299 str. F0039]
gi|288332010|gb|EFC70492.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 299 str. F0039]
Length = 181
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+++ S E K E I + + L V+++ IP E+ S+R G++V +E+ PG
Sbjct: 8 WYVLRAVSGKEAKVKEYIEAEIKHNTLLSSYVSQVLIPLEKHASLRNGKRVITEKISLPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV ++AV+ V HT++ P V+GFLG +NPSPV +EI ++ E ++ +
Sbjct: 68 YVFVEAVLKGDVAHTLRFIPNVLGFLGGLDNPSPVPQAEINRMLGTAEETEVADEINIPY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 128 EVNETVKVTDGPFSGFSGVIEEVNSEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|302390620|ref|YP_003826441.1| transcription antitermination protein nusG [Thermosediminibacter
oceani DSM 16646]
gi|302201248|gb|ADL08818.1| transcription antitermination protein nusG [Thermosediminibacter
oceani DSM 16646]
Length = 174
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K ++ R+ G+ + + +P E V ++ G+K ++R+
Sbjct: 1 MSKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRVLVPVEEEVEIKNGKKKVTQRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++TD +H +++TP V GF+GTG P P+ +SEI+ I+ Q+ ++ P
Sbjct: 61 FPGYVLVEMIVTDDSWHVVRNTPGVTGFVGTGNKPIPLQESEIKAILKQM--GIEEPKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +V + V V GPF +F G V ++ EK +V V + +FGR TP+EL +NQVEKI
Sbjct: 119 LDIDVDQNVKVVSGPFENFVGKVLEINHEKQKVKVLISMFGRETPIELDFNQVEKI 174
>gi|189218811|ref|YP_001939452.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4]
gi|189185669|gb|ACD82854.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4]
Length = 201
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 8/179 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY + V S E+K +++ R+ + LV E+ IP ERV VRKG+++ R+ +PG
Sbjct: 22 QWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYPG 81
Query: 64 YVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
YV ++ + D + ++ +++T VIGF G+NP P+ ++E ++ Q++
Sbjct: 82 YVFLQIQLRDSSGKLIERAWYFVRETSGVIGF-ADGDNPLPMPREQVEGMLRQIQERTSS 140
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F VG+RV V DGPF + G+++ VD E+ ++ V V IFGR TPVEL Y QVEK
Sbjct: 141 ALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199
>gi|302062645|ref|ZP_07254186.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato K40]
Length = 141
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H +KDTP+
Sbjct: 7 RVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHLVKDTPR 66
Query: 85 VIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+ GT + P+P+TD E E I+ +V +P FE GE V V+DGPFA FNG V
Sbjct: 67 VMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFADFNGTV 126
Query: 144 KNVDEEKSRVHV 155
+ V+ EKSR+ V
Sbjct: 127 EEVNYEKSRIQV 138
>gi|256371203|ref|YP_003109027.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
gi|256007787|gb|ACU53354.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
Length = 243
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E + +++ R+ GL+ + E+ IP E V ++ GR+V +R+ FPGY
Sbjct: 68 WYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPGY 127
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----SS 120
VL++A M D+V+ I++TP + F+G+G P P++ E+E + + RP S+
Sbjct: 128 VLVRAEMDDEVWSAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEELRPQPQRRST 187
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE+GE V V +GP A F G V V+ ++ ++ V IFGR TPVEL + QV K
Sbjct: 188 QEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSK 242
>gi|124514455|gb|EAY55968.1| transcription antitermination protein (NusG) [Leptospirillum
rubarum]
Length = 184
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 101/172 (58%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + SI R+ L +V ++ +P + V +++G+K S R+ FPGY
Sbjct: 13 WYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ T++ I TPKV GFLG G P P++ E+ + +++E+ P S F
Sbjct: 73 VLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELFDRIESGTAMPSPSQHFS 132
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E V ++DGPF F+G++ VD + ++ V V IFGR TPVEL + QVE++
Sbjct: 133 ESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184
>gi|158319530|ref|YP_001512037.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs]
gi|158139729|gb|ABW18041.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs]
Length = 172
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +I + G++ ++ E+ +P+E + ++ G+K E + FPG
Sbjct: 6 RWYVMHTYSGHENKVKMNIEKMVENRGMEDIILEVKVPTEEKIEIKNGKKKVKESKLFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K MTD+ ++ +++T V GF+G P P+TD EI+ + V+ P +
Sbjct: 66 YVLVKMFMTDESWYLVRNTRGVTGFVGPSSKPIPLTDQEIKSM------GVEEPRIEIDV 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VGE + V GPF +F G + +++ EK + V + +FGR TPVEL ++Q+EKI
Sbjct: 120 KVGESIKVISGPFETFIGTIDHINLEKQTLKVRISMFGRETPVELEFDQIEKI 172
>gi|154175492|ref|YP_001408646.1| transcription antitermination protein NusG [Campylobacter curvus
525.92]
gi|112803934|gb|EAU01278.1| transcription termination/antitermination factor NusG
[Campylobacter curvus 525.92]
Length = 176
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E I + G++ + E+ +P+E V+ ++ G++ +ER
Sbjct: 1 MAHKWYAIQTYAGSEMAVKRGIENLVKDHGIEEQLKEVIVPTEDVIEIKNGKQKINERTL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P++D +I I+ +V+ P
Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINTILEKVQKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FF+ GE V +++GPFA+F GIV+ D ++ + V IFGR TPV++ Y+QVEKI+
Sbjct: 120 IFFDEGESVRITEGPFANFTGIVEEYDMVHGKLRLNVSIFGRSTPVDILYSQVEKII 176
>gi|218438014|ref|YP_002376343.1| transcription antitermination protein NusG [Cyanothece sp. PCC
7424]
gi|218170742|gb|ACK69475.1| NusG antitermination factor [Cyanothece sp. PCC 7424]
Length = 213
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + + E + FP
Sbjct: 30 RWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPQTPTVKIRKDGSRQHGEEKVFP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ +M D + +K+TP VI F+G + P P++ SE+E I Q +
Sbjct: 90 GYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSSSEVERIFRQAQ 149
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
Q PV V EVG+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 150 G--QEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEFN 207
Query: 172 QVEK 175
Q+EK
Sbjct: 208 QIEK 211
>gi|307720234|ref|YP_003891374.1| transcription antitermination protein nusG [Sulfurimonas
autotrophica DSM 16294]
gi|306978327|gb|ADN08362.1| transcription antitermination protein nusG [Sulfurimonas
autotrophica DSM 16294]
Length = 175
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y ++ ++I + GL +T++ +P+E V+ V+ G+K SER
Sbjct: 1 MAHQWYSIQTYG-SDRTVRDAIFNMIEEHGLQDYITDVIVPTEDVIEVKDGKKKVSERSL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV + + ++ H I+ PKV GF+G G P+P+++ +I I+++V P
Sbjct: 60 YSGYVFARIDLNTEIQHMIQSIPKVSGFIGEGNVPTPLSEHDINVILDRVNNRAA-PKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VFF+ GE V + DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 119 VFFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175
>gi|291516066|emb|CBK65276.1| transcription antitermination protein nusG [Alistipes shahii WAL
8301]
Length = 186
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ E K E I + + L+ ++++ IP+E+V ++R G+KV+ E+ +PG
Sbjct: 7 QWYVVRAIGGKEGKVKEYIEAEIRHNHLEDYISQVLIPTEKVYTIRNGKKVSKEKVSYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQV-EAAVQR 116
YVL++A ++ I++TP V+GFLG + N +P+ E+ I+ +V E Q
Sbjct: 67 YVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDELNAQE 126
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 EENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVEK 185
>gi|298246509|ref|ZP_06970315.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963]
gi|297553990|gb|EFH87855.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963]
Length = 196
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 105/172 (61%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + YS E K + R++ + + + +P E V +++G++ +R+ FPGY
Sbjct: 25 WFAIHTYSGYENKVRSHLEARIASMDMRGKIFRVIVPMEEEVEIKQGQRRTVQRKVFPGY 84
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ +M+D+ ++ +++TP V F+G+G P P+ + EI+ I+ QV ++P + V F
Sbjct: 85 VLVEMIMSDEAWYVVRNTPGVTSFVGSGNKPVPLQEHEIKTILKQVTKETEKPKAKVSFS 144
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPFA F G V +++ ++++V V V FGR TPV L + QVEKI
Sbjct: 145 KGQSVRVVDGPFADFIGTVSDLNMDRNKVTVLVSFFGRETPVILDFLQVEKI 196
>gi|317126842|ref|YP_004093124.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522]
gi|315471790|gb|ADU28393.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522]
Length = 177
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ RL + + + +P E V+ G+ ++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRLESMDMSDKIFRVLVPVEEETEVKNGKSKQVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ +MTD ++ +++TP V GF+G+ G P+P+ E+E I+ Q+ V+ P
Sbjct: 61 FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVEGILRQM--GVEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V +GPFA+F G V+++ +K ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 KADIDFELKESVKVKEGPFANFIGTVEDIHADKQKLKVHVNMFGRETPVELDFTQVEKL 177
>gi|223038971|ref|ZP_03609263.1| transcription termination/antitermination factor NusG
[Campylobacter rectus RM3267]
gi|255322049|ref|ZP_05363197.1| transcription termination/antitermination factor NusG
[Campylobacter showae RM3277]
gi|222879944|gb|EEF15033.1| transcription termination/antitermination factor NusG
[Campylobacter rectus RM3267]
gi|255300862|gb|EET80131.1| transcription termination/antitermination factor NusG
[Campylobacter showae RM3277]
Length = 176
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + + ++ + EI +P+E V+ ++ G+K +ER
Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVRDNHIEEQLKEIIVPTEDVIEIKNGKKKINERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P+++ +I I+ +V+ P
Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGEAKKPTPLSEKDINLILEKVQKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FF+ GE V +++GPFA+F GIV+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IFFDNGENVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVEILYSQVEKIV 176
>gi|256420746|ref|YP_003121399.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256035654|gb|ACU59198.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 196
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++V S EKK E + + RS +++T+I +P E+V V+ G+KV E+ F+PG
Sbjct: 20 KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79
Query: 64 YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
YV+I+A+ MTD+V +I++ VI FLG + P + +E+ ++ +V+ ++
Sbjct: 80 YVMIEAIDGKMTDEVIQSIRNVSGVIHFLGK-DKPIALRKAEVNKMLGKVDEMSDNGLTM 138
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S F VGE + + DGPF FNGI++ V E+K ++ V V IFGR TPVEL + QVEKI
Sbjct: 139 SEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEKI 195
>gi|311748526|ref|ZP_07722311.1| transcription termination/antitermination factor NusG [Algoriphagus
sp. PR1]
gi|126577042|gb|EAZ81290.1| transcription termination/antitermination factor NusG [Algoriphagus
sp. PR1]
Length = 185
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++V + EKK + +SR +D + E+ IPSE+V +R G+K ER FFPG
Sbjct: 5 KWYVLRVVAGQEKKTKTYLDNEISRQEIDEFIPEVLIPSEKVYEMRNGKKRVRERNFFPG 64
Query: 64 YVLIKAVMTD-KVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEA--AVQ 115
YVL+ A +++ + H I P VIGFLG+ + P P+ SE+ I+ +VE
Sbjct: 65 YVLVNADLSNGEANHVITSIPGVIGFLGSSQGGASKTPEPLRQSEVNRILGKVEEIDEFA 124
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F VGE V V DGPF+ F G ++ V ++K +++V V IFGR TPVEL + QVEK
Sbjct: 125 EKLDTPFI-VGEAVKVMDGPFSGFTGTIEEVFDDKKKLNVMVKIFGRNTPVELNFIQVEK 183
>gi|157165039|ref|YP_001466540.1| transcription antitermination protein NusG [Campylobacter concisus
13826]
gi|112800025|gb|EAT97369.1| transcription termination/antitermination factor NusG
[Campylobacter concisus 13826]
Length = 176
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY +Q Y+ E I + G++ + E+ +P+E V+ ++ G++ +ER
Sbjct: 1 MSHKWYAIQTYAGSEMAVKRGIENLVRDHGIEDQLKEVIVPTEDVIEIKNGKQKINERTL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P+T+ +I I+ +V+ P
Sbjct: 61 YPGYAFACLDLDTALWHKIQSLPKVGRFIGEAKKPTPLTEKDINTILEKVQKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V +++GPFA+F GIV+ D ++ + V IFGR TPV++ Y+QVEKI+
Sbjct: 120 IFFEDGESVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVDILYSQVEKII 176
>gi|294056232|ref|YP_003549890.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
45221]
gi|293615565|gb|ADE55720.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
45221]
Length = 192
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 8/180 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+WY V SN E+KA + + ++ V EI +P+E V V+ G+K R+F+P
Sbjct: 10 PQWYAVHTLSNQEQKAKRYLDKFIPVEEMEDYVFEILMPTETVTEVKSGKKKTITRKFYP 69
Query: 63 GYVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYV +K + D K ++ +++ VI F+G G+ PSP+ +EI+ I+ QVE A
Sbjct: 70 GYVFVKMRLYDDDGNLLQKPWYFVREAQGVINFVG-GDRPSPLKKAEIDRILQQVEDADG 128
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + +E+GE V V+DGPF + G ++ +D EK ++ V V IFGR TPVEL Y QV++
Sbjct: 129 KEKPKIEYELGEMVKVNDGPFMNLVGKIEEIDPEKGKLKVSVSIFGRYTPVELEYWQVQR 188
>gi|330997390|ref|ZP_08321241.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
gi|329570764|gb|EGG52480.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
Length = 181
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E I + + V+++ IP+E+VV VR G+++ ER PG
Sbjct: 7 KWYVMRAVSGKESKVKEYIDAEIKKGDFGKFVSQVLIPTEKVVQVRNGKRIVKERNHLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++A + ++ +++TP V+GFLG + NP+P+ SE+ ++ V+ P +
Sbjct: 67 YVLVEAALVGEIPVLLRNTPNVLGFLGESNSNPTPLRQSEVNRLLGAVDEMQDVPEEVLI 126
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE V V++GPF+ F+ +++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 PYAEGETVKVTEGPFSGFSAVIEEVNNEKKKLKVMVKIFGRKTPLELGFMQVEK 180
>gi|325108569|ref|YP_004269637.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305]
gi|324968837|gb|ADY59615.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305]
Length = 199
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+++V SN EK +S+ R+ R ++ EI IP+E+VV + G+K E+R +PG
Sbjct: 26 RWYVLKVQSNREKSIRDSLNRRIKRDHMEDYFGEIIIPTEKVVETKGGKKRVREQRLYPG 85
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
Y++I+ ++ D ++ ++DT V F G P P+ D EI ++ E+ P +
Sbjct: 86 YIMIQMILNDDSWYLVRDTGGVGDFTGAAGKPIPMQDQEIARMLGAEESKQAEPTKVKID 145
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + +G F SF G ++ +DE ++ V + IFGR TPVEL + QVEKI
Sbjct: 146 LAVGDTVKIGEGTFESFEGSIEAIDEASGKISVLIEIFGRPTPVELEHWQVEKI 199
>gi|163847740|ref|YP_001635784.1| transcription termination/antitermination factor NusG [Chloroflexus
aurantiacus J-10-fl]
gi|222525603|ref|YP_002570074.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl]
gi|163669029|gb|ABY35395.1| transcription termination/antitermination factor NusG [Chloroflexus
aurantiacus J-10-fl]
gi|222449482|gb|ACM53748.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl]
Length = 187
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +++ R++ + + + +P+E + ++ G++ ++ +PG
Sbjct: 15 RWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +TD ++ +++TP V F+G G P+P+ D E++ I+ Q+E + P V +
Sbjct: 75 YVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQMEG--ETPKVRVSY 132
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ G+ V + DGPF F GIV +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 133 QKGQAVKIIDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 186
>gi|317052115|ref|YP_004113231.1| transcription termination/antitermination factor NusG
[Desulfurispirillum indicum S5]
gi|316947199|gb|ADU66675.1| transcription termination/antitermination factor NusG
[Desulfurispirillum indicum S5]
Length = 172
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 4/176 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K E++ R+S GL +T+I IP+E V + G+K R+
Sbjct: 1 MALSWYVIHAYSGYENKVQEALEERVSSLGLQDKITQILIPTENVAEYKGGKKKIVTRKR 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV ++ M +H +K+ PKV GF+G G P + DSE++ ++ + V+ V
Sbjct: 61 YPGYVYVQMEMDKTTWHVVKNIPKVTGFIG-GNKPVAIHDSEVQKLIESDKRLVEPKVE- 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F + V V +GPF FNG+V +VD E+ RV V V IFGR TPVE Y Q++KI
Sbjct: 119 --FVERDPVEVVEGPFHGFNGVVTHVDHERKRVKVNVSIFGRETPVEFEYTQIQKI 172
>gi|34540216|ref|NP_904695.1| transcription antitermination protein NusG [Porphyromonas
gingivalis W83]
gi|188995440|ref|YP_001929692.1| putative transcription antitermination protein [Porphyromonas
gingivalis ATCC 33277]
gi|34396528|gb|AAQ65594.1| transcription antitermination protein NusG [Porphyromonas
gingivalis W83]
gi|188595120|dbj|BAG34095.1| putative transcription antitermination protein [Porphyromonas
gingivalis ATCC 33277]
Length = 179
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
++Y+++ S E K E + + S L + + ++ IP+E+V++ R G++V ER + PG
Sbjct: 7 KFYVLRAISGKENKVREYLEAEMKHSDLGNYLFQVLIPTEKVMTQRAGKRVVKERPYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVF 122
YVL++AV+ +V H ++ TP VIGFLG G P+P+ SE+ I+ +V+ + +
Sbjct: 67 YVLVEAVLVGEVEHRLRSTPNVIGFLGDG-RPAPLHPSEVSRILGKVDQLDSEDEEYELS 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V VSDG FA F+ IV+ V+ +K ++ V V IFGR T +EL+Y QVEK
Sbjct: 126 FMVGETVKVSDGAFAGFDAIVEEVNPDKKKLKVMVKIFGRKTALELSYVQVEK 178
>gi|118475193|ref|YP_892473.1| transcription antitermination protein NusG [Campylobacter fetus
subsp. fetus 82-40]
gi|118414419|gb|ABK82839.1| transcription termination/antitermination factor NusG
[Campylobacter fetus subsp. fetus 82-40]
Length = 176
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + G++ + E+ +P+E V+ ++ G++ +ER
Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P++D +I I+ +V P
Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINLILEKVNKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V V++GPFA+FNG V+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 ISFETGEVVRVTEGPFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 176
>gi|224023595|ref|ZP_03641961.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM
18228]
gi|224016817|gb|EEF74829.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM
18228]
Length = 180
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E + + S L V+++ IP+E+ VR G+K+ ER + PG
Sbjct: 7 KWYVLRAVSGKEAKVKEYLEAEMRHSDLGEYVSQVLIPTEKTYQVRNGKKIVKERTYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
YVL++A + +V H +++ VIGFLG ++P P+ SE+ I+ V+ + ++
Sbjct: 67 YVLVEAALVGEVAHQLRNITNVIGFLGGQDHPVPLRQSEVNRILGTVDELQEIGEDLNIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V VS GPF+ F+G+++ V EK ++ V V IFGR TP+EL + VEK
Sbjct: 127 YAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|172035143|ref|YP_001801644.1| transcription antitermination protein NusG [Cyanothece sp. ATCC
51142]
gi|171696597|gb|ACB49578.1| transcription antitermination protein [Cyanothece sp. ATCC 51142]
Length = 214
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + +I IP V VRK G + E + FP
Sbjct: 31 RWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKVFP 90
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL+K +M D + +K+TP VI F+G+ + P P++ SE+E I Q E
Sbjct: 91 GYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQAE 150
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
PV + E+G+++ V GPF F G V V E++++ + IFGR TPVEL +N
Sbjct: 151 QP--EPVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFN 208
Query: 172 QVEK 175
QVEK
Sbjct: 209 QVEK 212
>gi|126659912|ref|ZP_01731036.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110]
gi|126618776|gb|EAZ89521.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110]
Length = 206
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + +I IP V VRK G + E + FP
Sbjct: 23 RWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKVFP 82
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL+K +M D + +K+TP VI F+G+ + P P++ SE+E I Q E
Sbjct: 83 GYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQAE 142
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
PV + E+G+++ V GPF F G V V E++++ + IFGR TPVEL +N
Sbjct: 143 QP--EPVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFN 200
Query: 172 QVEK 175
QVEK
Sbjct: 201 QVEK 204
>gi|288803797|ref|ZP_06409224.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica D18]
gi|288333704|gb|EFC72152.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica D18]
Length = 182
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 7 KWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKLSL 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V +V
Sbjct: 67 PGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQNV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 SYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|91200655|emb|CAJ73705.1| strongly similar to transcription antitermination protein NusG
[Candidatus Kuenenia stuttgartiensis]
Length = 182
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W++++V SN E K +++ R+ G++ L+T + +PSE++ V+ G+K S+R+
Sbjct: 1 MPKEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKI 60
Query: 61 FPGYVLI------KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+++ K + +V+ TI++T F+G P P+T E+E +++ ++
Sbjct: 61 YPGYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQSKPVPMTKYEVEKLLSDLDQKE 120
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+RP + + F GE+V + +GPF +++GIV+ V RV V + +FGR TPVEL Y QVE
Sbjct: 121 ERPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180
Query: 175 KI 176
I
Sbjct: 181 SI 182
>gi|302345056|ref|YP_003813409.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica ATCC 25845]
gi|302149542|gb|ADK95804.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica ATCC 25845]
Length = 182
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 7 KWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKLSL 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V +V
Sbjct: 67 PGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQNV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 PYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|152991722|ref|YP_001357443.1| transcription antitermination protein NusG [Sulfurovum sp. NBC37-1]
gi|151423583|dbj|BAF71086.1| transcriptional antitermination factor NusG [Sulfurovum sp.
NBC37-1]
Length = 176
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q YS E +I ++ G++ V I +P+E V+ V+ G K +ER
Sbjct: 1 MAFQWYAIQTYSGSELSVKRAIEQLVADYGMEDKVERIVVPTEEVIEVKNGEKKITERTL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
+PGY + ++H I+ P+V F+G + P+ +T+++I+ I++++E A RP
Sbjct: 61 YPGYAFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTALTEADIKVILDKMEQKAAPRP-- 118
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V + DGPFA+F G+V+ D + ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 119 KVDFETGEMVRIVDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEILYTQVEKII 176
>gi|282878708|ref|ZP_06287476.1| transcription termination/antitermination factor NusG [Prevotella
buccalis ATCC 35310]
gi|281299099|gb|EFA91500.1| transcription termination/antitermination factor NusG [Prevotella
buccalis ATCC 35310]
Length = 181
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+++ S E K E I + + L V+++ IP E++ ++R G++V E+ PG
Sbjct: 8 WYVLRAVSGKEAKLKEYIEAEIKHNTLLQQHVSQVLIPMEKLATLRNGKRVEKEKISLPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ ++A + V HT++ P +GFLG +NPSPV SEI ++ + E V +
Sbjct: 68 YIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGEAEDTEIMNGIEVPY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 128 EVDEVVKVTDGPFSGFSGVIEEVNAEKHKLKVLVKIFGRKTPLELSFMQVEK 179
>gi|110639547|ref|YP_679756.1| transcription antitermination protein nusG [Cytophaga hutchinsonii
ATCC 33406]
gi|110282228|gb|ABG60414.1| transcription antitermination protein nusG [Cytophaga hutchinsonii
ATCC 33406]
Length = 185
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V+ S EKK + ++R L V ++ IP+E+V +R G+K ER FFPGY
Sbjct: 6 WYVVRAVSGQEKKVKSYLENEITRQRLVDYVPQVLIPAEKVYEMRNGKKRVRERSFFPGY 65
Query: 65 VLIKAVMTD-KVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVE-AAVQRP 117
VLI+A ++ + H I P V+GFLG E P P+ SE+ I+ V+ + V
Sbjct: 66 VLIQADLSHGEAAHVITSIPGVLGFLGASEGAASKKPIPLRQSEVNRILGTVDDSQVGEV 125
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F VGE V V DGPF+ F G V+ V EEK +++V V IFGR TPVEL Y QVEK+
Sbjct: 126 VLETPFVVGETVKVMDGPFSGFTGSVEEVFEEKKKLNVMVKIFGRNTPVELNYIQVEKL 184
>gi|154491726|ref|ZP_02031352.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC
43184]
gi|218264360|ref|ZP_03478217.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii
DSM 18315]
gi|154087967|gb|EDN87012.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC
43184]
gi|218222058|gb|EEC94708.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii
DSM 18315]
Length = 180
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
++Y+++ S E K E + L + L V+++ IP+E+ +VR G+KV ER + PG
Sbjct: 7 KFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVF 122
YVL++A + +V H +++ P VIGFLG +NP P+ +E+ I+ V E Q+ +
Sbjct: 67 YVLVEAALVGEVAHRLRNIPNVIGFLGGSDNPVPLRPAEVSRILGTVDELQEQQDDLDIQ 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V ++ GPF F G+++ V+ EK ++ V V +FGR TP+EL Y QVEK
Sbjct: 127 FYVGENVKITFGPFNGFTGVIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179
>gi|83815555|ref|YP_445881.1| transcription termination/antitermination factor NusG [Salinibacter
ruber DSM 13855]
gi|294507791|ref|YP_003571849.1| transcription antitermination protein NusG [Salinibacter ruber M8]
gi|83756949|gb|ABC45062.1| transcription termination/antitermination factor NusG [Salinibacter
ruber DSM 13855]
gi|294344119|emb|CBH24897.1| transcription antitermination protein NusG [Salinibacter ruber M8]
Length = 185
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 7/178 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY+++ +SN EKK + + R GL+ V EI IP+E V ++ G K E+ FF
Sbjct: 7 TDTWYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHI---MNQVEAAVQR 116
PGY+L+ +T + +D P VIGFL GTG+ P+ + + EI+ I M++ E ++
Sbjct: 67 PGYILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQ 126
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
P + F+VG+ V V DGPF SFNGIV++V ++ +V V V IFGR TPVEL Y QVE
Sbjct: 127 P--EMPFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182
>gi|261409534|ref|YP_003245775.1| NusG antitermination factor [Paenibacillus sp. Y412MC10]
gi|315649717|ref|ZP_07902801.1| NusG antitermination factor [Paenibacillus vortex V453]
gi|329925607|ref|ZP_08280448.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. HGF5]
gi|261285997|gb|ACX67968.1| NusG antitermination factor [Paenibacillus sp. Y412MC10]
gi|315274905|gb|EFU38281.1| NusG antitermination factor [Paenibacillus vortex V453]
gi|328939736|gb|EGG36078.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. HGF5]
Length = 177
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E + + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEIVNKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ + TD ++ +++TP V GF+ G+G P+P+ E+E I+ + ++ P
Sbjct: 61 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHM--GMEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++ E V + GPFA+F G V+ + EKS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDIKESVRIKVGPFANFVGSVEEILAEKSKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|299821040|ref|ZP_07052928.1| transcription termination/antitermination factor NusG [Listeria
grayi DSM 20601]
gi|299816705|gb|EFI83941.1| transcription termination/antitermination factor NusG [Listeria
grayi DSM 20601]
Length = 177
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMTDQIFRVIVPEEEETEVKNGKTKTLKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+ + E E I+ + R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTALLPEEAERILKSM-GMNDRT 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + FEVGE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 120 VEAD-FEVGETVMVKEGPFAEFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177
>gi|67925194|ref|ZP_00518562.1| transcription antitermination protein NusG [Crocosphaera watsonii
WH 8501]
gi|67852953|gb|EAM48344.1| transcription antitermination protein NusG [Crocosphaera watsonii
WH 8501]
Length = 214
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 14/187 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+ RWY VQV S CEK+ ++ R+ + + +I IP V VRK G + E +
Sbjct: 28 LVARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEK 87
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMN 108
FPGYVL++ +M D + +K+TP VI F+G+ + P P++ SE+E I
Sbjct: 88 VFPGYVLVRMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRRRGHVKPLPLSASEVERIFR 147
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
Q E P+ + E+G+++ V GPF F G V V E++++ + IFGR TPVEL
Sbjct: 148 QAEQP--EPLVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVEL 205
Query: 169 AYNQVEK 175
+NQVEK
Sbjct: 206 EFNQVEK 212
>gi|313159496|gb|EFR58859.1| transcription termination/antitermination factor NusG [Alistipes
sp. HGB5]
Length = 186
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ E K E I + + L+ ++++ IP+E+V ++R G+KV+ E+ +PG
Sbjct: 7 QWYVVRAIGGKENKVKEYIEAEIRHNNLEEYISQVLIPTEKVYTIRNGKKVSKEKVSYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEAAVQRP 117
YVL++A ++ I++TP V+GFLG + N +P+ E+ I+ +V+
Sbjct: 67 YVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDEMNAME 126
Query: 118 VSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL + QVEK
Sbjct: 127 EENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELGFTQVEK 185
>gi|307152580|ref|YP_003887964.1| NusG antitermination factor [Cyanothece sp. PCC 7822]
gi|306982808|gb|ADN14689.1| NusG antitermination factor [Cyanothece sp. PCC 7822]
Length = 210
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + +I IP V +RK G + + E + FP
Sbjct: 27 RWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQIQIPQTPTVKIRKDGSRQHGEEKVFP 86
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ +M D + +K+TP VI F+G + P P++ SE+E I +
Sbjct: 87 GYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPMPLSSSEVERIFKVAQ 146
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
Q PV V EVG+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 147 G--QEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEFN 204
Query: 172 QVEK 175
Q+EK
Sbjct: 205 QIEK 208
>gi|83591289|ref|YP_431298.1| transcription antitermination protein nusG [Moorella thermoacetica
ATCC 39073]
gi|83574203|gb|ABC20755.1| transcription antitermination protein nusG [Moorella thermoacetica
ATCC 39073]
Length = 175
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ + + + +P E V ++ G++ +R+
Sbjct: 1 MEKAWYVIHTYSGYENKVKANLEKRVESMNMGDKIFRVVVPMEDEVQIKDGKRKIVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV+++ V+TD ++ +++TP V GF+GTG P P+ + E++ I+ Q+ V+ P
Sbjct: 61 YPGYVMVEMVLTDASWYVVRNTPGVTGFVGTGNKPIPLREEEVDQILQQM--GVEEPRPR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VGE V V+ GPF +F G ++ + +K ++ V V +FGR TP+EL +NQ+EKI
Sbjct: 119 IDVTVGENVRVTSGPFENFIGSIEEIMPDKGKLRVLVSMFGRETPIELDFNQIEKI 174
>gi|325269552|ref|ZP_08136168.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella multiformis DSM 16608]
gi|324988171|gb|EGC20138.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella multiformis DSM 16608]
Length = 182
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 7 KWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKLSL 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++A MT V T++ P V+GFLG +PSPV ++I ++ VE V V
Sbjct: 67 PGYVLVQANMTPDVASTLRFMPNVLGFLGGMADPSPVRQADINRLLGNVEDTELDEVQEV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 PYMVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|325288565|ref|YP_004264746.1| transcription antitermination protein nusG [Syntrophobotulus
glycolicus DSM 8271]
gi|324963966|gb|ADY54745.1| transcription antitermination protein nusG [Syntrophobotulus
glycolicus DSM 8271]
Length = 175
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K ++ R+ ++ + + +P E + V+ G+K S+R+
Sbjct: 1 MSKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEVKNGKKKISKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ MTD ++ +++TP V GF+G+G P P+ + E+ +I+ Q+ +++
Sbjct: 61 FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGSGSKPLPLLEHEVANILRQM--GLEKVRHK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V V GPF G+++ + EEK++V V V +FGR TPVEL + QV+K+
Sbjct: 119 IDVNVGQSVKVISGPFKDTIGVIQEILEEKAKVRVSVSMFGRETPVELEFGQVQKL 174
>gi|253681448|ref|ZP_04862245.1| transcription termination/antitermination factor NusG [Clostridium
botulinum D str. 1873]
gi|253561160|gb|EES90612.1| transcription termination/antitermination factor NusG [Clostridium
botulinum D str. 1873]
Length = 173
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVAQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKTIDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF I++ ++ EK ++ V +FGR TP EL +NQ+EKI
Sbjct: 120 SVGESVKVISGPLKSFVAIIQEINVEKQKIKALVNMFGRETPTELNFNQIEKI 172
>gi|150008879|ref|YP_001303622.1| transcription anti-termination protein [Parabacteroides distasonis
ATCC 8503]
gi|255014707|ref|ZP_05286833.1| transcription anti-termination protein [Bacteroides sp. 2_1_7]
gi|256841127|ref|ZP_05546634.1| transcription termination/antitermination factor NusG
[Parabacteroides sp. D13]
gi|262383752|ref|ZP_06076888.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_33B]
gi|298375892|ref|ZP_06985848.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_19]
gi|301311924|ref|ZP_07217846.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 20_3]
gi|149937303|gb|ABR44000.1| transcription anti-termination protein [Parabacteroides distasonis
ATCC 8503]
gi|256736970|gb|EEU50297.1| transcription termination/antitermination factor NusG
[Parabacteroides sp. D13]
gi|262294650|gb|EEY82582.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_33B]
gi|298266929|gb|EFI08586.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_19]
gi|300830026|gb|EFK60674.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 20_3]
Length = 180
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
++Y+++ S E K E + L + L V+++ IP+E+ +VR G+KV ER + PG
Sbjct: 7 KFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVF 122
YVL++A + +V H +++ P VIGFLG + P P+ +E+ I+ V E Q+ +
Sbjct: 67 YVLVEAALVGEVAHRLRNIPNVIGFLGGSDTPVPLRPAEVNRILGTVDELQEQQEDLDIQ 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V ++ GPF+ F GI++ V+ EK ++ V V +FGR TP+EL Y QVEK
Sbjct: 127 FYVGESVKITFGPFSGFTGIIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179
>gi|319957698|ref|YP_004168961.1| transcription antitermination protein nusg [Nitratifractor
salsuginis DSM 16511]
gi|319420102|gb|ADV47212.1| transcription antitermination protein nusG [Nitratifractor
salsuginis DSM 16511]
Length = 176
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E+ +I + GL + ++ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHQWYAIQTYAGSERSVKRAIEQMVEDYGLQDRIDKVVVPTEEVIEVKNGQKKITERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV + ++H I+ P+V F+G + P+P+ +S+I+ I+ ++E + P
Sbjct: 61 YSGYVFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTPLNESDIKLILEKMENK-KPPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V + DGPFA+F G+V+ D + ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 VDFEPGEMVRIIDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEIDYTQVEKII 176
>gi|261749531|ref|YP_003257217.1| transcription termination/antitermination factor NusG
[Blattabacterium sp. (Periplaneta americana) str. BPLAN]
gi|261497624|gb|ACX84074.1| transcription termination/antitermination factor NusG
[Blattabacterium sp. (Periplaneta americana) str. BPLAN]
Length = 182
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + +G + ++ +P E+V+ +RKG+K++ E+ +PG
Sbjct: 7 KWYVLKTISGQESKVKSYIENEIRDNGFQEYIGKVLVPIEKVIQMRKGKKIHREKVHYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQRPVS-S 120
YV+I+A + + H IK+ P VI FL G+ S P+ E+ ++ +++ + + S
Sbjct: 67 YVMIEAHLEGEAVHAIKNVPGVINFLSEGKGGSAIPMRKEEVNKMLGKIDQLSENYENFS 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VGE + V DGPF+ FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI
Sbjct: 127 IPFVVGETIKVIDGPFSGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 182
>gi|282858393|ref|ZP_06267573.1| transcription termination/antitermination factor NusG [Prevotella
bivia JCVIHMP010]
gi|282588841|gb|EFB93966.1| transcription termination/antitermination factor NusG [Prevotella
bivia JCVIHMP010]
Length = 181
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I +L + L V E+ +P E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAISGKEAKVKEYIDAQLRLNTKLAERVFEVLLPMEKHASLRNGKRVIKEKLSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++A MT + T++ P V+GFLG PSP+ ++I ++ VE + V
Sbjct: 67 GYVLVQANMTPDIASTLRFMPNVLGFLGGTSEPSPIRQADINRLLGNVEETEVNGMQDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPFA F+G+++ ++ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 YSVGESVKVIEGPFAGFHGVIEEINTEKHKLKVMVMIFGRQNPLELSFMQVSK 179
>gi|196233624|ref|ZP_03132465.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
gi|196222294|gb|EDY16823.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
Length = 188
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY VQV + E K ++++ R+ + V E+ +P+ERV V++G+K + R+ PG
Sbjct: 9 QWYAVQVLAGQENKVLDNLTKRIKTEEMSDFVYEVIVPTERVSEVKRGKKTETVRKLMPG 68
Query: 64 YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
YVL+ + D+ ++ I++T VIGF G E P P+ SE+E ++ QV ++
Sbjct: 69 YVLVNMWLLDENRQPVDRTWYFIRETTGVIGFAGNKERPIPMRPSEVEAVLAQVRGTEEK 128
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F VGE V VSDGPF + +G V +D ++ ++ V + IFGR EL Y Q+E+
Sbjct: 129 AKPKIEFNVGETVKVSDGPFQNQSGTVTEIDPDRGKIRVSISIFGREAIAELEYWQIER 187
>gi|282852730|ref|ZP_06262072.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 224-1]
gi|282556472|gb|EFB62092.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 224-1]
Length = 183
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + FPG
Sbjct: 8 KWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETIRGKKQEVDEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ + P +
Sbjct: 68 YVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEPKAD 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 128 --YEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKEF 181
>gi|169830421|ref|YP_001716403.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
gi|169637265|gb|ACA58771.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 178
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +W++V YS E K ++ R+ ++ + I +P E + V+ G++ S+R+
Sbjct: 1 MSKQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ ++ D Y +++TP V GF+G+ G P P+TD+E I++Q+E P
Sbjct: 61 FPGYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEG--DEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE+V V GPF +F G V +V+ EK+++ V + +FGR TP+EL Y Q+EK+
Sbjct: 119 RIRIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177
>gi|116629026|ref|YP_814198.1| transcription antiterminator [Lactobacillus gasseri ATCC 33323]
gi|238853593|ref|ZP_04643962.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 202-4]
gi|311111179|ref|ZP_07712576.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri MV-22]
gi|116094608|gb|ABJ59760.1| transcription antitermination protein nusG [Lactobacillus gasseri
ATCC 33323]
gi|238833737|gb|EEQ26005.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 202-4]
gi|311066333|gb|EFQ46673.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri MV-22]
Length = 183
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + FPG
Sbjct: 8 KWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ + P +
Sbjct: 68 YVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEPKAD 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 128 --YEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKEF 181
>gi|218246573|ref|YP_002371944.1| transcription antitermination protein NusG [Cyanothece sp. PCC
8801]
gi|257059613|ref|YP_003137501.1| transcription antitermination protein NusG [Cyanothece sp. PCC
8802]
gi|218167051|gb|ACK65788.1| NusG antitermination factor [Cyanothece sp. PCC 8801]
gi|256589779|gb|ACV00666.1| NusG antitermination factor [Cyanothece sp. PCC 8802]
Length = 208
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
T RWY VQV S CEK+ ++ R+ + + ++ IP + VRK G + + E +
Sbjct: 23 TARWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPKTPTIKVRKDGSRQHGEEKV 82
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ +M D + +K+TP VI F+G ++ P P++ EIE I Q
Sbjct: 83 FPGYVLVRMIMDDDAWQVVKNTPHVINFVGAEQSRGTGRGRGHVRPVPLSPGEIERIFKQ 142
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E VQ PV + VG+++ V GPF F G V V E+ ++ + IFGR TPVEL
Sbjct: 143 SE--VQEPVVKIDTMVGDKIMVLSGPFKDFEGEVVEVSPERGKLRALLSIFGRDTPVELE 200
Query: 170 YNQVEKI 176
+NQ+EK+
Sbjct: 201 FNQIEKL 207
>gi|42518504|ref|NP_964434.1| transcription antitermination protein NusG [Lactobacillus johnsonii
NCC 533]
gi|227888784|ref|ZP_04006589.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC
33200]
gi|268318923|ref|YP_003292579.1| Transcription antitermination protein nusG [Lactobacillus johnsonii
FI9785]
gi|41582789|gb|AAS08400.1| transcription antitermination protein NusG [Lactobacillus johnsonii
NCC 533]
gi|227850621|gb|EEJ60707.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC
33200]
gi|262397298|emb|CAX66312.1| Transcription antitermination protein nusG [Lactobacillus johnsonii
FI9785]
gi|329666774|gb|AEB92722.1| transcription antitermination protein [Lactobacillus johnsonii DPC
6026]
Length = 183
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + FPG
Sbjct: 8 KWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ + P +
Sbjct: 68 YVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDDEIERILASQGQPAKEPKAD 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 128 --YEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKEF 181
>gi|78776549|ref|YP_392864.1| transcription antitermination protein NusG [Sulfurimonas
denitrificans DSM 1251]
gi|78497089|gb|ABB43629.1| transcription antitermination protein nusG [Sulfurimonas
denitrificans DSM 1251]
Length = 179
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY +Q Y N E+ +I + L +T++ +P+E V+ V+ G+K SER + G
Sbjct: 8 QWYSIQTYGN-ERTVRLAILNLIEEMRLQDFITDVIVPTEDVIEVKDGKKKISERSLYSG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + + ++ H I+ PKV GF+G P+P+++ +I I+++V+ P VFF
Sbjct: 67 YVFARIELNTEIQHIIQSIPKVSGFIGEANIPTPLSEHDINVILDRVQNRAA-PKPKVFF 125
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE V ++DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 126 DNGETVRITDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 179
>gi|289579158|ref|YP_003477785.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
gi|289528871|gb|ADD03223.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
Length = 176
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FPG
Sbjct: 10 KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +MTD ++ +++T V GF+G G P P+T++E+ + ++ ++V F
Sbjct: 70 YVLVKMIMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI
Sbjct: 124 NVKDTVRVISGPFENFIGVVEEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 176
>gi|312144260|ref|YP_003995706.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus']
gi|311904911|gb|ADQ15352.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus']
Length = 176
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EKK ++ R++ +G++ + I +P+E + +KG+ ++R FPG
Sbjct: 6 KWYVVHTYSGHEKKVKANLEKRIASTGMEDNIFRILVPTEEKIEKKKGKDEVVKKRIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L++ + DK ++ +K+TP VIGF+ G P PV EI++I+ + ++ SV F
Sbjct: 66 YILLQMDLNDKSWYVVKNTPGVIGFVSGGNKPLPVEKDEIDNILRSMGEKAKK--VSVEF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
EVG+++ V+ GPF F GIVK + E+ +V V V +FGR TPVEL ++Q++
Sbjct: 124 EVGDQIVVTSGPFEDFEGIVKEIHPEQGKVKVLVSMFGRETPVELEFSQIK 174
>gi|78043442|ref|YP_361133.1| transcription termination/antitermination factor NusG
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995557|gb|ABB14456.1| transcription termination/antitermination factor NusG
[Carboxydothermus hydrogenoformans Z-2901]
Length = 173
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + I +P E + ++ G+K S+R+
Sbjct: 1 MEKNWYVVHTYSGHENKVKANLEKRIESLNMGNHIFRILVPMEDELEIKDGKKKVSKRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++TD+ Y+ ++ TP V GF+G G P P+T E+ IM Q+ + P +
Sbjct: 61 FPGYVLVEMILTDESYNVVRHTPGVTGFVG-GSKPIPLTAQEVRQIMKQM--GIDEPRTK 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+G+ V V+ GPF F G V+ + +K +V V V +FGR TP+EL ++QV KI
Sbjct: 118 IDLEIGQPVRVNAGPFEGFVGNVEEIYPDKGKVKVLVSMFGRETPIELDFSQVTKI 173
>gi|284928831|ref|YP_003421353.1| transcription antitermination protein NusG [cyanobacterium UCYN-A]
gi|284809290|gb|ADB94995.1| transcription antitermination protein nusG [cyanobacterium UCYN-A]
Length = 206
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + +I IP + VRK G + E + FP
Sbjct: 23 RWYAVQVASGCEKRVKSNLEQRVQTLDTAGNILQIQIPKAPTIKVRKDGSRQQGEEKVFP 82
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GY+L+K +M D + IK TP VI F+G+ + P P++ SE+E I Q E
Sbjct: 83 GYILVKMIMDDDTWLVIKSTPNVINFVGSEQRRASGRGRGHVKPLPLSPSEVERIFRQTE 142
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P+ + EVG+++ V GPF F G V V E++++ + IFGR TPVEL +N
Sbjct: 143 RS--EPIIKIDMEVGDKIVVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFN 200
Query: 172 QVEK 175
QVEK
Sbjct: 201 QVEK 204
>gi|331268400|ref|YP_004394892.1| NusG antitermination factor [Clostridium botulinum BKT015925]
gi|329124950|gb|AEB74895.1| NusG antitermination factor [Clostridium botulinum BKT015925]
Length = 173
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V++G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKEGKKKVTQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKTIDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLKSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172
>gi|282879912|ref|ZP_06288637.1| transcription termination/antitermination factor NusG [Prevotella
timonensis CRIS 5C-B1]
gi|281306214|gb|EFA98249.1| transcription termination/antitermination factor NusG [Prevotella
timonensis CRIS 5C-B1]
Length = 181
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+++ + E K E I + + L V++I IP E+ ++R G++V E+ PG
Sbjct: 8 WYVLRAVNGKEAKLKEYIEAEMKHNTLLQQHVSQILIPMEKHAALRNGKRVEKEKISLPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ ++A + V HT++ P +GFLG +NPSPV SEI ++ VE V +
Sbjct: 68 YIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGDVEETEITNDVEVPY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QV+K
Sbjct: 128 EVDEVVTVTDGPFSGFSGVIEEVNVEKHKLKVMVKIFGRKTPLELSFMQVQK 179
>gi|262340952|ref|YP_003283807.1| transcription antitermination protein NusG [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272289|gb|ACY40197.1| transcription antitermination protein NusG [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 184
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + +G + ++ +P E+V+ +RKG+K++ E+ +PG
Sbjct: 7 KWYVIKTISGQENKVKSYIENEIRDNGFQEHIGKVLVPIEKVIQMRKGKKIHREKVHYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIMNQVEAAVQRPVS 119
YV+++A + + H IK+ P VI FL G+ P P+ E+ ++ +++ + +
Sbjct: 67 YVMVEANLEGEAVHAIKNVPGVINFLSEGKGSSAVPIPMRKEEVNKMLGKIDELSENYEN 126
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F VGE + V DGPF FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI
Sbjct: 127 ISIPFVVGETIKVIDGPFTGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 184
>gi|308070990|ref|YP_003872595.1| Transcription antitermination protein nusG [Paenibacillus polymyxa
E681]
gi|310644219|ref|YP_003948978.1| nusg antitermination factor [Paenibacillus polymyxa SC2]
gi|305860269|gb|ADM72057.1| Transcription antitermination protein nusG [Paenibacillus polymyxa
E681]
gi|309249170|gb|ADO58737.1| NusG antitermination factor [Paenibacillus polymyxa SC2]
Length = 177
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E + + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVTKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ V TD ++ +++TP V GF+ G+G P+P+ E+E I+ + + P
Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHM--GMVEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+V E V + GPFA+F G V+ + EKS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDVKESVRIKVGPFANFVGSVEEILVEKSKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|260909715|ref|ZP_05916409.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
oral taxon 472 str. F0295]
gi|260636140|gb|EEX54136.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
oral taxon 472 str. F0295]
Length = 181
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+++ S E K E I L + L V ++ IP E+ S+R G++V E+ PG
Sbjct: 8 WYVLRAVSGKEAKVKEYIEAELKHNTLLQSHVFQVLIPMEKQASLRNGKRVEKEKISLPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV ++A + V HT++ P V+GFLG +NPSPV S+I ++ E ++ +
Sbjct: 68 YVFVEANLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQSDINRMLGAAENTELENDINIPY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 128 SVDETVKVTDGPFSGFTGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|158336005|ref|YP_001517179.1| transcription antitermination protein NusG [Acaryochloris marina
MBIC11017]
gi|158306246|gb|ABW27863.1| transcription termination/antitermination factor NusG
[Acaryochloris marina MBIC11017]
Length = 206
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY VQV S CEKK ++ RL + + +I IP + VRK G ++ E + FPG
Sbjct: 25 WYAVQVASGCEKKVKHNLEQRLQTLDVADRIVQIEIPQTPTIKVRKDGSRLTGEEKVFPG 84
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVEA 112
YVL++ ++ D+ + +K+TP VI F+G + P P++ SE+E I Q A
Sbjct: 85 YVLVRMILDDETWQVVKNTPNVINFVGAEQQRRYGRGRGHVKPMPLSPSEVERIFRQ--A 142
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
Q PV V VG+++ V +GPF F G V V E++++ + IFGR TPVEL +NQ
Sbjct: 143 QEQEPVVKVDMSVGDKIQVLNGPFKDFEGEVIEVSLERNKLKALLSIFGRDTPVELEFNQ 202
Query: 173 VEK 175
V K
Sbjct: 203 VRK 205
>gi|304405633|ref|ZP_07387292.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9]
gi|304345672|gb|EFM11507.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9]
Length = 177
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E V + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLERRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ V TD ++ +++TP V GF+ G+G P+P+ E++ I+ + ++ P
Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHM--GIEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+ E V V GPFA F G ++ + +K+++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFELKETVNVKVGPFAGFVGTIEEILLDKAKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|109948066|ref|YP_665294.1| transcription antitermination protein NusG [Helicobacter
acinonychis str. Sheeba]
gi|109715287|emb|CAK00295.1| transcription antitermination protein NusG [Helicobacter
acinonychis str. Sheeba]
Length = 175
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I S L + EI +P+E ++ V K K +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLASDHDLKDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + + IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNISIFGRNTPIEILHSQVEKII 175
>gi|229815830|ref|ZP_04446154.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM
13280]
gi|229808525|gb|EEP44303.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM
13280]
Length = 179
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-R 59
M+ RWY+V YS E + + R+ G+ + +I IP+E V +++G K + + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTEHVTELKEGGKRDEKDVK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + P
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGSSAPKR 120
Query: 120 SVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+V EVG + V++GP A F+G V V E+ +V V ++IFGR TPVEL + Q+E I
Sbjct: 121 AVVDIEVGTSIRVTNGPLADFDGKVSEVMPEQGKVKVTLLIFGRETPVELGFEQIEVIA 179
>gi|253577165|ref|ZP_04854485.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251843409|gb|EES71437.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. oral taxon 786 str. D14]
Length = 177
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E V + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ + TD ++ +++TP V GF+ G+G P+P+ E++ I+ + ++ P
Sbjct: 61 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILAHM--GMEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+ E V + GPFA+F G ++ + +KS+V V V +FGR TP+EL Y+QVEKI
Sbjct: 119 KPVIEFELKENVRIKVGPFANFVGSIEEILTDKSKVKVHVNMFGRETPLELDYSQVEKI 177
>gi|124005807|ref|ZP_01690645.1| transcription termination/antitermination factor NusG [Microscilla
marina ATCC 23134]
gi|123988490|gb|EAY28131.1| transcription termination/antitermination factor NusG [Microscilla
marina ATCC 23134]
Length = 189
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ ++ EKKA + +++ V ++ IPSE+V +R G+K E+ FFPG
Sbjct: 5 KWYVVRAIASKEKKAKTYLENEIAKREFHEHVPQVLIPSEKVYEMRNGKKRLREKSFFPG 64
Query: 64 YVLIKAVM------TDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAA 113
Y++++A + T ++ H I P +IGFLG T ++P + SE+ I+ +V+ +
Sbjct: 65 YIMVQANLEKDNPTTGELIHMITSIPGIIGFLGATGSTSKDPVALRQSEVNRILGKVDES 124
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ V F VGE V V DGPF F G V+ V EE+ +++V V IFGR TPVEL Y+Q
Sbjct: 125 AEDDVKLETTFIVGETVKVIDGPFNGFTGTVEEVFEERQKINVMVKIFGRNTPVELNYSQ 184
Query: 173 VEK 175
VEK
Sbjct: 185 VEK 187
>gi|15612191|ref|NP_223843.1| transcription antitermination protein NusG [Helicobacter pylori
J99]
gi|11387011|sp|Q9ZK20|NUSG_HELPJ RecName: Full=Transcription antitermination protein nusG
gi|4155723|gb|AAD06704.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ Y+QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKII 176
>gi|138893771|ref|YP_001124224.1| transcription antitermination protein NusG [Geobacillus
thermodenitrificans NG80-2]
gi|134265284|gb|ABO65479.1| Transcription antitermination factor [Geobacillus
thermodenitrificans NG80-2]
Length = 177
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + EI+ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEIKLILKRMGMPLAE- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 120 -VDVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|325954358|ref|YP_004238018.1| NusG antitermination factor [Weeksella virosa DSM 16922]
gi|323436976|gb|ADX67440.1| NusG antitermination factor [Weeksella virosa DSM 16922]
Length = 180
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I L + ++ +P E+V +R G+K E+ FPG
Sbjct: 5 KWYVVKTVSGQELKVKNYIENEAQYHKLTDYIGQVVVPMEKVFQIRNGKKYQKEKVHFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YV+I+A + +V H +K+ P VI FL G +P P+ SE+ ++ +V E A +S
Sbjct: 65 YVMIEASLQGEVPHIVKNIPGVISFLSATKGGDPVPMRQSEVNRMLGKVDELADSIESNS 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VGE + V DGPF+ F G ++ + E+K ++ V V+IFGR TP+EL + QVEKI
Sbjct: 125 IPFDVGETIKVIDGPFSGFTGSIEKIHEDKRKLEVMVLIFGRKTPLELNFGQVEKI 180
>gi|297380385|gb|ADI35272.1| transcription termination/antitermination factor NusG [Helicobacter
pylori v225d]
Length = 175
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V DGPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVDGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|171914826|ref|ZP_02930296.1| Transcription antiterminator [Verrucomicrobium spinosum DSM 4136]
Length = 189
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ V + E++ E++ R+ + V E+ +P+ERV V+KG++ S R+ FPG
Sbjct: 10 QWYVLHVRAGLEQRVRENMERRIQSEEMGEFVFEVVVPTERVSEVKKGKRSESTRKVFPG 69
Query: 64 YVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
Y+L + D + +H +K+T + F GT ++P P+ E+E ++ QV +
Sbjct: 70 YILANMWLLDENNKPVVQTWHFVKETDGFLNFAGTKDHPIPLRPKEVEVLLAQVREREEG 129
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VG+ V V+DGPF S GI++ +D EK + V V IFGR TPV+L Y QVEK
Sbjct: 130 VKPKFMFSVGDTVRVADGPFESQTGIIEEIDPEKGLLRVSVNIFGRSTPVDLEYWQVEK 188
>gi|325853515|ref|ZP_08171347.1| transcription termination/antitermination factor NusG [Prevotella
denticola CRIS 18C-A]
gi|327313170|ref|YP_004328607.1| transcription termination/antitermination factor NusG [Prevotella
denticola F0289]
gi|325484319|gb|EGC87247.1| transcription termination/antitermination factor NusG [Prevotella
denticola CRIS 18C-A]
gi|326944948|gb|AEA20833.1| transcription termination/antitermination factor NusG [Prevotella
denticola F0289]
Length = 182
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 7 KWYVLRAVSGKEGKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKLSL 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++A M+ V T++ P V+GFLG +PSPV ++I ++ VE V +
Sbjct: 67 PGYVLVQANMSPDVASTLRFMPNVLGFLGGMSDPSPVRQADINRLLGNVEETELDEVQDI 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 127 PYLVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|309389945|gb|ADO77825.1| transcription antitermination protein nusG [Halanaerobium
praevalens DSM 2228]
Length = 189
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS+ E+K ++ R++ +G++ + I +P+E+ + +KG+ ++R FPGY
Sbjct: 20 WYVVHTYSSHERKVKANLEKRIASTGMEDSIFRILVPTEKKIEKKKGKDEVVKKRIFPGY 79
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+L++ M DK ++ +K+TP VIGF+ G P PV E++ I++ + ++ SV FE
Sbjct: 80 ILLQMKMNDKSWYVVKNTPGVIGFVSGGTKPLPVAKEEVDAILSSMGEKAKK--VSVDFE 137
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+G++V V GPF F+G++K + E+ + + V +FGR TPVEL ++Q EK
Sbjct: 138 IGDQVTVKHGPFEDFDGVIKEIHPEQGKAKILVSMFGRETPVELEFDQFEK 188
>gi|254425360|ref|ZP_05039078.1| transcription termination/antitermination factor NusG
[Synechococcus sp. PCC 7335]
gi|196192849|gb|EDX87813.1| transcription termination/antitermination factor NusG
[Synechococcus sp. PCC 7335]
Length = 218
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CEKK ++ R+ L +++ E+ IP V +RK G + + E + F
Sbjct: 34 PRWYAVQVASGCEKKVKLTLEQRVKTFDLSNVILEVEIPQTPAVKMRKDGSRHSIEEKVF 93
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVLI+ + D + +K+TP VI F+G + P P++ E++ I Q
Sbjct: 94 PGYVLIRMALDDDAWQVVKNTPHVINFVGAEQRRAQGRGRGHVKPMPLSAGEVKRIFKQT 153
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 154 QE--QAPVVKIDMAAGDKITVLSGPFKDFEGEVVEVSPERSKLKALLSIFGRDTPVELEF 211
Query: 171 NQVEK 175
NQV+K
Sbjct: 212 NQVKK 216
>gi|307565696|ref|ZP_07628165.1| transcription termination/antitermination factor NusG [Prevotella
amnii CRIS 21A-A]
gi|307345522|gb|EFN90890.1| transcription termination/antitermination factor NusG [Prevotella
amnii CRIS 21A-A]
Length = 181
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I +L S L V E+ +P E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAISGKESKVKEYIDAQLRMNSKLAERVFEVLLPMEKHTSLRNGKRVVKEKLSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++A MT V T++ P V+GFLG P+PV +++ ++ VE + V
Sbjct: 67 GYVLVQANMTPDVASTLRFIPNVLGFLGGTSEPTPVRQADVNRLLGNVEDVEAGNMQDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF+ F+G++++V+ EK ++ V V+IFGR P+EL++ QV +
Sbjct: 127 YNVGESVKVIEGPFSGFHGVIEDVNTEKHKLKVMVMIFGRQNPLELSFMQVAR 179
>gi|326390674|ref|ZP_08212229.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325993352|gb|EGD51789.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 177
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FPG
Sbjct: 11 KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V
Sbjct: 71 YVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDL 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI
Sbjct: 125 NVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 177
>gi|116871629|ref|YP_848410.1| transcription antitermination protein NusG [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116740507|emb|CAK19627.1| transcription antitermination factor NusG [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 177
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ + +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEAERILKSMGMVEKRA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 121 EAD--FEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177
>gi|167036788|ref|YP_001664366.1| transcription antitermination protein NusG [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039507|ref|YP_001662492.1| transcription antitermination protein NusG [Thermoanaerobacter sp.
X514]
gi|256752774|ref|ZP_05493619.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300915242|ref|ZP_07132557.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|307267205|ref|ZP_07548711.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|307725166|ref|YP_003904917.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
gi|320115210|ref|YP_004185369.1| transcription termination/antitermination factor NusG
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166853747|gb|ABY92156.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
gi|166855622|gb|ABY94030.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748335|gb|EEU61394.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300888966|gb|EFK84113.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|306917784|gb|EFN48052.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|307582227|gb|ADN55626.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
gi|319928301|gb|ADV78986.1| transcription termination/antitermination factor NusG
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 174
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FPG
Sbjct: 8 KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V
Sbjct: 68 YVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDL 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI
Sbjct: 122 NVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 174
>gi|323703915|ref|ZP_08115547.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574]
gi|323531131|gb|EGB21038.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574]
Length = 175
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++
Sbjct: 1 MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ + E + I+ Q+ ++ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGTKPIPLNEDEAKAIIKQM--GMEEPRTR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + +GE V V+DGPF +F G+++ + +K +V V V +FGR TP+EL + Q+EK+
Sbjct: 119 VDYSLGENVRVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKM 174
>gi|298372192|ref|ZP_06982182.1| transcription termination/antitermination factor NusG
[Bacteroidetes oral taxon 274 str. F0058]
gi|298275096|gb|EFI16647.1| transcription termination/antitermination factor NusG
[Bacteroidetes oral taxon 274 str. F0058]
Length = 186
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S EK+ E I L + G L V+++ IP+ERV VR G+KV ER F P
Sbjct: 7 KWYVLRAMSGKEKQVKEYIDIELEKGGELSKYVSQVVIPTERVYVVRNGKKVIKERTFLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS-----PVTDSEIEHIMNQVEAAVQRP 117
GYVLI+ +T ++ +++ P V+GFLG E+P P+ E+ ++ V++ + P
Sbjct: 67 GYVLIEVALTREISGWLRNVPNVLGFLGVNESPGNYQPIPLRSQEVTRLLGTVDSLDENP 126
Query: 118 VSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V V GPF F G+V+ V EK R+ V V IFGR T +EL + QVEK
Sbjct: 127 EELLEPYLVGETVRVITGPFNGFTGVVEEVSNEKRRMKVNVKIFGRNTTLELGFMQVEK 185
>gi|317180930|dbj|BAJ58716.1| transcription antitermination protein NusG [Helicobacter pylori
F32]
Length = 176
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F VK D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVKEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|256848158|ref|ZP_05553602.1| transcription termination/antitermination factor NusG
[Lactobacillus coleohominis 101-4-CHN]
gi|256715218|gb|EEU30195.1| transcription termination/antitermination factor NusG
[Lactobacillus coleohominis 101-4-CHN]
Length = 182
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E + ++ R G++ + + +P E V +V+ G+ +E + FPG
Sbjct: 7 RWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEETVRTVKDGQAKETEEKTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ IM ++ A V R +
Sbjct: 67 YVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMGADVAR--TD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ + + GPFA G V VD +K +V+V++ +FGR T E+ ++Q++ +
Sbjct: 125 IDVNVGDSIKIIAGPFADLTGKVTAVDHDKMKVNVDIEMFGRQTSAEVGFDQIDTM 180
>gi|300362324|ref|ZP_07058500.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri JV-V03]
gi|300353315|gb|EFJ69187.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri JV-V03]
Length = 183
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 107/177 (60%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + FPG
Sbjct: 8 KWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM-NQVEAAVQRPVS 119
YVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ +Q + A ++
Sbjct: 68 YVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEQKAD 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 128 ---YEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKEF 181
>gi|150025253|ref|YP_001296079.1| transcription antitermination protein NusG [Flavobacterium
psychrophilum JIP02/86]
gi|149771794|emb|CAL43268.1| Transcription antitermination protein NusG [Flavobacterium
psychrophilum JIP02/86]
Length = 183
Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I ++R L V+++ +P+E+VV+V+ G+K+ ++ +F G
Sbjct: 8 KWYVVRAVSGQENKVKAYIEAEINRLELSDYVSQVLVPTEKVVTVKDGKKIIKDKVYFSG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQV-EAAVQRPVSS 120
YV+++A + ++ H IK VIGFLG +N P P+ +E+ ++ +V E AV S
Sbjct: 68 YVMVEANLAGEITHIIKSITSVIGFLGETKNGDPVPLRIAEVNRMLGKVDELAVTADHGS 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VGE V V+DGPF FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 128 IPFTVGETVKVTDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183
>gi|238855649|ref|ZP_04645949.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 269-3]
gi|260664910|ref|ZP_05865761.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii SJ-7A-US]
gi|282933598|ref|ZP_06338967.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
gi|238831715|gb|EEQ24052.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 269-3]
gi|260561393|gb|EEX27366.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii SJ-7A-US]
gi|281302253|gb|EFA94486.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
Length = 185
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E K + R G+ + + P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPQETKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D EI I+ ++P
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVEAKKP--D 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V +++G F G + ++ E+K ++ V V +FGR T EL Y+QV+K
Sbjct: 126 IDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKKF 181
>gi|315301178|ref|ZP_07872442.1| transcription termination/antitermination factor NusG [Listeria
ivanovii FSL F6-596]
gi|313630448|gb|EFR98317.1| transcription termination/antitermination factor NusG [Listeria
ivanovii FSL F6-596]
Length = 177
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKRA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 121 EAN--FEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177
>gi|196251119|ref|ZP_03149798.1| NusG antitermination factor [Geobacillus sp. G11MC16]
gi|196209360|gb|EDY04140.1| NusG antitermination factor [Geobacillus sp. G11MC16]
Length = 177
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKLILKRMGMPLAE- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 120 -VDVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|37520399|ref|NP_923776.1| transcription antitermination protein NusG [Gloeobacter violaceus
PCC 7421]
gi|35211392|dbj|BAC88771.1| transcription antitermination protein [Gloeobacter violaceus PCC
7421]
Length = 205
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 14/186 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
P WY VQV S CEKK ++ R+ + + ++ IP + V +R+ G + S + F
Sbjct: 20 PHWYFVQVASGCEKKVKTNLEQRIQTMEMSERILKVEIPERQAVRIRQEGSRTASAEKIF 79
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVLI VM D+ + +K+TP VI F+GT E P P+ +E+ I
Sbjct: 80 PGYVLINMVMDDESWQVVKNTPNVINFVGTEERRRYGRGRGHVTPRPLGSAEVNRIFRAA 139
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
E + PV V E G ++ V+ GPF FNG V V+ E+ + + IFGR TPVEL +
Sbjct: 140 EQ--EEPVIKVDLEPGHKIEVTAGPFQDFNGEVVEVNPERGTLKALISIFGRDTPVELGF 197
Query: 171 NQVEKI 176
NQV ++
Sbjct: 198 NQVRRL 203
>gi|308179704|ref|YP_003923832.1| transcription antitermination protein NusG [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308045195|gb|ADN97738.1| transcription antitermination protein NusG [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 182
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ FPG
Sbjct: 8 RWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + + +
Sbjct: 68 YVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEETEQILHQLGMSARH--TE 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I
Sbjct: 126 LDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181
>gi|308171992|ref|YP_003918697.1| transcription antitermination factor [Bacillus amyloliquefaciens
DSM 7]
gi|307604856|emb|CBI41227.1| transcription antitermination factor [Bacillus amyloliquefaciens
DSM 7]
gi|328910063|gb|AEB61659.1| transcription antitermination factor [Bacillus amyloliquefaciens
LL3]
Length = 177
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|118443261|ref|YP_877185.1| transcription antitermination protein NusG [Clostridium novyi NT]
gi|118133717|gb|ABK60761.1| transcription termination/antitermination factor NusG [Clostridium
novyi NT]
Length = 173
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKNVDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172
>gi|168187827|ref|ZP_02622462.1| transcription termination/antitermination factor NusG [Clostridium
botulinum C str. Eklund]
gi|169294323|gb|EDS76456.1| transcription termination/antitermination factor NusG [Clostridium
botulinum C str. Eklund]
Length = 173
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ M E V +S
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVSA-MGISEKNVDIDIS---- 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+
Sbjct: 121 -VGESVKVISGPLNSFVAVIQEINIEKQKIKALVNMFGRETPTELNFNQIEKL 172
>gi|28377493|ref|NP_784385.1| transcription antitermination protein NusG [Lactobacillus plantarum
WCFS1]
gi|254555723|ref|YP_003062140.1| transcription antitermination protein NusG [Lactobacillus plantarum
JDM1]
gi|28270325|emb|CAD63226.1| transcription antitermination protein NusG [Lactobacillus plantarum
WCFS1]
gi|254044650|gb|ACT61443.1| transcription antitermination protein NusG [Lactobacillus plantarum
JDM1]
Length = 182
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ FPG
Sbjct: 8 RWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + + +
Sbjct: 68 YVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSARH--TE 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I
Sbjct: 126 LDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181
>gi|256852096|ref|ZP_05557483.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 27-2-CHN]
gi|260661334|ref|ZP_05862247.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 115-3-CHN]
gi|282934888|ref|ZP_06340120.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
gi|297205029|ref|ZP_06922425.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii JV-V16]
gi|256615508|gb|EEU20698.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 27-2-CHN]
gi|260547789|gb|EEX23766.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 115-3-CHN]
gi|281301069|gb|EFA93381.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
gi|297149607|gb|EFH29904.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii JV-V16]
Length = 185
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E K + R G+ + + P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPEETKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D EI I+ ++P
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVEAKKP--D 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V +++G F G + ++ E+K ++ V V +FGR T EL Y+QV+K
Sbjct: 126 IDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKKF 181
>gi|261417593|ref|YP_003251275.1| transcription antitermination protein NusG [Geobacillus sp.
Y412MC61]
gi|297528468|ref|YP_003669743.1| NusG antitermination factor [Geobacillus sp. C56-T3]
gi|319765251|ref|YP_004130752.1| NusG antitermination factor [Geobacillus sp. Y412MC52]
gi|261374050|gb|ACX76793.1| NusG antitermination factor [Geobacillus sp. Y412MC61]
gi|297251720|gb|ADI25166.1| NusG antitermination factor [Geobacillus sp. C56-T3]
gi|317110117|gb|ADU92609.1| NusG antitermination factor [Geobacillus sp. Y412MC52]
Length = 177
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDVKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRMGMPLAE- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 120 -VDVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|317182454|dbj|BAJ60238.1| transcription antitermination protein NusG [Helicobacter pylori
F57]
Length = 176
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E+ ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVERRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|15612681|ref|NP_240984.1| transcription antitermination protein NusG [Bacillus halodurans
C-125]
gi|14423809|sp|Q9KGE7|NUSG_BACHD RecName: Full=Transcription antitermination protein nusG
gi|10172730|dbj|BAB03837.1| transcriptional antitermination factor [Bacillus halodurans C-125]
Length = 178
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + +P E V+ G+ R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ E++ I+ Q+ +R
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQMGMQEERQ 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + F++ E V V +GPFA+F G ++ + +K ++ V V +FGR TPVEL + Q+EKI
Sbjct: 121 V-EIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178
>gi|154684619|ref|YP_001419780.1| transcription antitermination protein NusG [Bacillus
amyloliquefaciens FZB42]
gi|154350470|gb|ABS72549.1| NusG [Bacillus amyloliquefaciens FZB42]
Length = 177
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|254412797|ref|ZP_05026570.1| transcription termination/antitermination factor NusG [Microcoleus
chthonoplastes PCC 7420]
gi|196180532|gb|EDX75523.1| transcription termination/antitermination factor NusG [Microcoleus
chthonoplastes PCC 7420]
Length = 205
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
+ RWY VQV S CEK+ ++ R+ + + + IP V +RK G + +SE +
Sbjct: 20 SARWYAVQVASGCEKRVKTNLEQRVQTLDVADRILRVQIPQTPTVKIRKDGSRQHSEEKV 79
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ VM D+ + +K+TP VI F+G + P P++ E+E I
Sbjct: 80 FPGYVLVEMVMDDESWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSPGEVERIFKH 139
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E Q PV V VG+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 140 TEE--QEPVIKVDMAVGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 197
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 198 FNQVEK 203
>gi|313635074|gb|EFS01424.1| transcription termination/antitermination factor NusG [Listeria
seeligeri FSL N1-067]
Length = 177
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEIKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKRA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 121 EAD--FEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177
>gi|269793111|ref|YP_003318015.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100746|gb|ACZ19733.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 181
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ YS E K ++ R++ G++ + + +P E V V++GR R+ FP
Sbjct: 7 RWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSVF 122
YVL++ +M D+ ++ ++ TP V GF+G+G +P P+TD E+ +M ++ A ++P +
Sbjct: 67 YVLVEMIMDDQSWYVVRHTPGVTGFVGSGNHPIPLTDREVAEVMGKIGLPADRKPKVELD 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVG+ V V GPF G V VD +K RV V +FGR T E + +EK++
Sbjct: 127 IEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKVL 181
>gi|134298080|ref|YP_001111576.1| NusG antitermination factor [Desulfotomaculum reducens MI-1]
gi|134050780|gb|ABO48751.1| transcription antitermination protein nusG [Desulfotomaculum
reducens MI-1]
Length = 175
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++
Sbjct: 1 MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+GTG P P+ + E + I+ Q+ ++ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGTGSKPIPLDEEEAKTIIKQM--GIEEPKAK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +GE V V+DGPF +F G+++ + +K +V V V +FGR TP+EL + Q+EK+
Sbjct: 119 IDVVLGENVKVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKL 174
>gi|297620824|ref|YP_003708961.1| Transcription antitermination protein nusG [Waddlia chondrophila
WSU 86-1044]
gi|297376125|gb|ADI37955.1| Transcription antitermination protein nusG [Waddlia chondrophila
WSU 86-1044]
Length = 180
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V V S EKK ++I + G+ L+ + +P E + V+KG++ E+R +PGY
Sbjct: 4 WFVVHVLSAQEKKVKKAIEEQRDLKGMTDLIDIVLLPVENISEVKKGQQKVVEKRMWPGY 63
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+L+K +TD+ + I D P VIGFLG G+ P+P+T E++ I+ +E ++ V FE
Sbjct: 64 LLVKMTLTDESWGYICDVPGVIGFLG-GDQPTPLTPQEVDEILQDIEEKKEKVVQKHQFE 122
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
VG+ V + DG F +F G V +V +K R+ V+V IFGR T V +L + QVE++
Sbjct: 123 VGDNVKIIDGVFVNFVGTVTDVQPDKGRLSVQVSIFGRETQVDDLEFVQVEEV 175
>gi|317133008|ref|YP_004092322.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
gi|315470987|gb|ADU27591.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
Length = 173
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L ++ EI IP+E V ++ K ER+ FPG
Sbjct: 6 KWYVVHTYSGYENKVASNLQTIVENRSLQDVIQEIKIPTEMVTEIKDNVKREVERKTFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K + D +H +++T V GF+G+G +P P+T+ E+E + + + V +
Sbjct: 66 YVLVKMELNDDTWHIVRNTRGVTGFVGSGSHPEPLTEKEVEAL------GMDKRTVEVNY 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + DGP F G V +D +K++V V V +FGR TPVEL QVE I
Sbjct: 120 AVGDSVRIVDGPLDGFIGTVDTLDTDKNQVTVTVSMFGRETPVELELGQVEVI 172
>gi|305433028|ref|ZP_07402184.1| transcription termination/antitermination factor NusG
[Campylobacter coli JV20]
gi|304443729|gb|EFM36386.1| transcription termination/antitermination factor NusG
[Campylobacter coli JV20]
Length = 184
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 10 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 70 SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 129 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 184
>gi|251799659|ref|YP_003014390.1| NusG antitermination factor [Paenibacillus sp. JDR-2]
gi|247547285|gb|ACT04304.1| NusG antitermination factor [Paenibacillus sp. JDR-2]
Length = 177
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V Y+ E K ++ RL G++ + + +P E V + G+K +R+
Sbjct: 1 MEKRWYVVHTYAGYENKVKANLERRLESMGMEDKIFRVLVPMEEEVVEKDGKKKTVQRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ V TD ++ +++TP V GF+ G+G P + E+E I+ + ++ P
Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPIALMPDEVEQILKHM--GMEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++ E V V GPFA F G V+ + +KS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDLKETVRVKVGPFADFVGTVEEILLDKSKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|56418627|ref|YP_145945.1| transcription antitermination protein NusG [Geobacillus
kaustophilus HTA426]
gi|56378469|dbj|BAD74377.1| transcription antitermination factor [Geobacillus kaustophilus
HTA426]
Length = 177
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMKDKIFRVVVPEETETDVKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRMGMPLAE- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 120 -VDVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|295692220|ref|YP_003600830.1| transcription antitermination protein nusg [Lactobacillus crispatus
ST1]
gi|295030326|emb|CBL49805.1| Transcription antitermination protein nusG [Lactobacillus crispatus
ST1]
Length = 185
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV++
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPVAN 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 128 --FDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|28212185|ref|NP_783129.1| transcription antitermination protein NusG [Clostridium tetani E88]
gi|28204629|gb|AAO37066.1| transcription antitermination protein nusG [Clostridium tetani E88]
Length = 173
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L + +I +P E V ++ G+K + ++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLQDWIHDIRVPMEEQVEIKDGKKKIALKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK VMTD ++ +++T V GF+G G P P+TD E+E + + V +
Sbjct: 66 YVLIKMVMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDIEVESM------GISDEVIELDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V V+ GP +F +++ + EK + V V +FGR TPVEL +NQ++K+
Sbjct: 120 EIGESVKVTTGPLENFPAVIQEIFPEKHKAKVLVNMFGRETPVELDFNQIQKL 172
>gi|254458743|ref|ZP_05072167.1| transcription termination/antitermination factor NusG
[Campylobacterales bacterium GD 1]
gi|207084509|gb|EDZ61797.1| transcription termination/antitermination factor NusG
[Campylobacterales bacterium GD 1]
Length = 175
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y E+ +I + GL ++E+ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHQWYSIQTYG-SERAVRIAILNMIEEMGLQDFISEVIVPTEDVIEVKDGKKKITERSL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV + +V H I PKV GF+G P+P+++ +I I+++V P
Sbjct: 60 YSGYVFANIDLNTEVQHLITALPKVSGFIGEANTPTPLSEHDINVILDRVNNRAA-PKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V+F+ GE V + DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 119 VYFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175
>gi|57504724|ref|ZP_00370778.1| transcription termination/antitermination factor NusG
[Campylobacter coli RM2228]
gi|57019380|gb|EAL56078.1| transcription termination/antitermination factor NusG
[Campylobacter coli RM2228]
Length = 177
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|226226256|ref|YP_002760362.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca
T-27]
gi|226089447|dbj|BAH37892.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca
T-27]
Length = 181
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL---DHLVTEITIPSERVVSVRKGRKVNSERRF 60
RWY +Q S E K I ++ D L+ + +P+++VV ++ G+KV ER+
Sbjct: 5 RWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVERKI 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-S 119
FPGYVL++ V + H I VI F+G ++P P+ D E+ ++ Q + A + PV
Sbjct: 65 FPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQADPADETPVRE 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ F VG+ V +++GPFA FNG V+ + +K +V V V +FGR T VEL Y Q+
Sbjct: 125 EIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQL 178
>gi|328955955|ref|YP_004373288.1| transcription antitermination protein nusG [Coriobacterium
glomerans PW2]
gi|328456279|gb|AEB07473.1| transcription antitermination protein nusG [Coriobacterium
glomerans PW2]
Length = 178
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ RWY+V YS E + + R+ G+ + +I IP E V +++G + + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLERRIESMGMQDRIFDIEIPIEHVTEIKEGGHRETKDAK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E +M + +
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGANGKPAPLSRDEFNKMMRRSSKGEAPKRT 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V EVG V V+ GP A F+G V V+ E +V V ++IFGR TPVEL+++QV I
Sbjct: 121 AVGLEVGTTVRVTSGPLADFDGQVAEVNAEAGKVKVILLIFGRETPVELSFDQVAAI 177
>gi|162448675|ref|YP_001611042.1| transcription antitermination protein NusG [Sorangium cellulosum
'So ce 56']
gi|161159257|emb|CAN90562.1| transcription antitermination protein NusG [Sorangium cellulosum
'So ce 56']
Length = 176
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++ YS E K +++ R+ + L+ EI IPSE V R G K ++
Sbjct: 1 MAKKWYVIHTYSGYEAKVRDALQQRVKQYSLEDRFGEILIPSETVTENRPGGKTRVRQKL 60
Query: 61 -FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGY+ ++ M ++V+H +KDTPKV GF+G + P V +I+++ + +P
Sbjct: 61 SLPGYIFVEMEMNEQVWHLVKDTPKVTGFIGN-QTPQEVPIVQIDNLRRGIVEGAVKPKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V DG FA+F G V +V +K ++ V+V IFGR T VEL ++ VEK
Sbjct: 120 RLTFEVGEEVRVLDGAFANFTGTVDDVKMDKQKLKVKVSIFGRPTSVELDFSAVEK 175
>gi|261839924|gb|ACX99689.1| transcription antitermination protein NusG [Helicobacter pylori 52]
gi|315587091|gb|ADU41472.1| transcription termination/antitermination factor NusG [Helicobacter
pylori 35A]
Length = 177
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERR 59
M WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER
Sbjct: 1 MMMDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERS 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P
Sbjct: 61 LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 KIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 177
>gi|16799355|ref|NP_469623.1| transcription antitermination protein NusG [Listeria innocua
Clip11262]
gi|16412707|emb|CAC95511.1| transcription antitermination factor [Listeria innocua Clip11262]
gi|313620919|gb|EFR92094.1| transcription termination/antitermination factor NusG [Listeria
innocua FSL S4-378]
gi|313625359|gb|EFR95151.1| transcription termination/antitermination factor NusG [Listeria
innocua FSL J1-023]
Length = 177
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKRA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 121 EAD--FEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177
>gi|139438532|ref|ZP_01772048.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC
25986]
gi|133776071|gb|EBA39891.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC
25986]
Length = 178
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ RWY+V YS E + + R+ G+ + +I IP ERV +++G ++ + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIEIPMERVTEIKEGGKRETKDSK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E + + +
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGNGKPAPLSRDEYNKMTRRPGKGDSPKRT 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
SV +VG V V+DGP F+G V V+ E ++ V ++IFGR TPVEL +NQV
Sbjct: 121 SVDIQVGTSVRVTDGPLTDFDGKVSEVNTEAGKLKVTLMIFGRETPVELDFNQV 174
>gi|16077169|ref|NP_387982.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. 168]
gi|221307913|ref|ZP_03589760.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. 168]
gi|221312234|ref|ZP_03594039.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221317168|ref|ZP_03598462.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221321431|ref|ZP_03602725.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. SMY]
gi|296333098|ref|ZP_06875552.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305672800|ref|YP_003864471.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii str. W23]
gi|321313772|ref|YP_004206059.1| transcription antitermination protein NusG [Bacillus subtilis BSn5]
gi|548391|sp|Q06795|NUSG_BACSU RecName: Full=Transcription antitermination protein nusG
gi|285628|dbj|BAA02560.1| transcription antitermination factor NusG [Bacillus subtilis]
gi|2632368|emb|CAB11877.1| transcription antitermination factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|291482473|dbj|BAI83548.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. natto BEST195]
gi|296149714|gb|EFG90609.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305411043|gb|ADM36161.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii str. W23]
gi|320020046|gb|ADV95032.1| transcription antitermination protein NusG [Bacillus subtilis BSn5]
Length = 177
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|332178503|gb|AEE14192.1| NusG antitermination factor [Thermodesulfobium narugense DSM 14796]
Length = 179
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ SN EK+ E+I R R GL+ +T + IP E+ V + +K S ++ FPG
Sbjct: 9 KWYVITTLSNYEKRVEEAILVRAQREGLEDKITRVLIPVEKEVKMIGHQKKESSKKVFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D ++ ++ TP V GF+ + + P P++ E+E IM + A +PV V F
Sbjct: 69 YVLVEMDLDDATWNLVRTTPGVTGFISSKKKPLPLSPEEVEKIM--MYAKSDKPVIRVEF 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V+ GPFA G++ + EK V + + +FGR TP E+A Q+EK+
Sbjct: 127 EKGQVVRVTAGPFAEQTGVIDEIFPEKGTVRLVINLFGRDTPAEIALTQIEKV 179
>gi|293381063|ref|ZP_06627084.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 214-1]
gi|312977941|ref|ZP_07789687.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus CTV-05]
gi|290922363|gb|EFD99344.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 214-1]
gi|310895248|gb|EFQ44316.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus CTV-05]
Length = 185
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV-- 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 126 VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|256844505|ref|ZP_05549991.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 125-2-CHN]
gi|256849107|ref|ZP_05554540.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US]
gi|262047587|ref|ZP_06020542.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus MV-3A-US]
gi|256613583|gb|EEU18786.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 125-2-CHN]
gi|256713883|gb|EEU28871.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US]
gi|260572163|gb|EEX28728.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus MV-3A-US]
Length = 185
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV-- 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 126 VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|291334048|gb|ADD93721.1| transcription termination/antitermination factor NusG [uncultured
marine bacterium MedDCM-OCT-S05-C114]
Length = 192
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGG-RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY +Q SN E K + + ++EI +P E V V+ G+K +R+F+P
Sbjct: 10 RWYALQCLSNHEDKVKRYLTKYKEDDEEFASCLSEILVPIETVSEVKNGKKKQRDRKFYP 69
Query: 63 GYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYV ++ + D+V ++ IK+T VI F+G ENP+P+ D EI I+ QV A
Sbjct: 70 GYVFVEMKLFDQVGNLKKKPWYKIKETDGVINFIGR-ENPTPLADDEIGRILKQVNEAEG 128
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V V F VGE V + DGPF + G ++ +D +K + V V IFGR TPVEL + QVEK
Sbjct: 129 KEVPKVKFAVGEVVKILDGPFLNLTGEIEEIDPQKGTLKVSVSIFGRFTPVELEFWQVEK 188
>gi|288929390|ref|ZP_06423235.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 317 str. F0108]
gi|288329492|gb|EFC68078.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 317 str. F0108]
Length = 181
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+++ S E K E I L + L V ++ IP E+ S+R G++V E+ PG
Sbjct: 8 WYVLRAVSGKEAKVKEYIEAELKHNTMLQSHVFQVLIPMEKQASLRNGKRVEKEKISLPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV ++A + V HT++ P V+GFLG +NPSPV ++I ++ E + +
Sbjct: 68 YVFVEADLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQADINRMLGAAENTELENDIDIPY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 128 SVDETVKVTDGPFSGFMGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|227894581|ref|ZP_04012386.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM
16047]
gi|227863572|gb|EEJ70993.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM
16047]
Length = 198
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 21 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++ +RP ++
Sbjct: 81 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKRPTAN 140
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 141 --FDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 194
>gi|319649130|ref|ZP_08003338.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2]
gi|317388830|gb|EFV69649.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2]
Length = 179
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 3 MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++
Sbjct: 63 FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRM--GLEER 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+
Sbjct: 121 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 179
>gi|52783957|ref|YP_089786.1| transcription antitermination protein NusG [Bacillus licheniformis
ATCC 14580]
gi|163119187|ref|YP_077386.2| transcription antitermination protein NusG [Bacillus licheniformis
ATCC 14580]
gi|52346459|gb|AAU39093.1| NusG [Bacillus licheniformis ATCC 14580]
gi|145902690|gb|AAU21748.2| transcription antitermination factor [Bacillus licheniformis ATCC
14580]
Length = 177
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++
Sbjct: 61 FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRM--GLEER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+
Sbjct: 119 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 177
>gi|227879328|ref|ZP_03997193.1| transcriptional antiterminator NusG [Lactobacillus crispatus
JV-V01]
gi|227861072|gb|EEJ68726.1| transcriptional antiterminator NusG [Lactobacillus crispatus
JV-V01]
Length = 199
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 22 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV
Sbjct: 82 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV-- 139
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 140 VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195
>gi|57237527|ref|YP_178541.1| transcription antitermination protein NusG [Campylobacter jejuni
RM1221]
gi|86148936|ref|ZP_01067168.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|86151847|ref|ZP_01070061.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153839|ref|ZP_01072042.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni HB93-13]
gi|88597087|ref|ZP_01100323.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 84-25]
gi|121613601|ref|YP_001000180.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 81-176]
gi|148925852|ref|ZP_01809539.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8486]
gi|157414766|ref|YP_001482022.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 81116]
gi|167005138|ref|ZP_02270896.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205355346|ref|ZP_03222117.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8421]
gi|218562128|ref|YP_002343907.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|283955895|ref|ZP_06373385.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 1336]
gi|315124017|ref|YP_004066021.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|14423820|sp|Q9PI36|NUSG_CAMJE RecName: Full=Transcription antitermination protein nusG
gi|57166331|gb|AAW35110.1| transcription antitermination protein NusG [Campylobacter jejuni
RM1221]
gi|85840294|gb|EAQ57551.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|85841476|gb|EAQ58724.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85842800|gb|EAQ60012.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni HB93-13]
gi|88190776|gb|EAQ94749.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112359834|emb|CAL34621.1| transcription antitermination protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|121504265|gb|EAQ73248.2| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 81-176]
gi|145844838|gb|EDK21942.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8486]
gi|157385730|gb|ABV52045.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 81116]
gi|205346580|gb|EDZ33212.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8421]
gi|283792555|gb|EFC31334.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 1336]
gi|284925740|gb|ADC28092.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni IA3902]
gi|307747405|gb|ADN90675.1| Transcription antitermination protein nusG [Campylobacter jejuni
subsp. jejuni M1]
gi|315017739|gb|ADT65832.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315057893|gb|ADT72222.1| Transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni S3]
gi|315928198|gb|EFV07515.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315929765|gb|EFV08935.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni 305]
gi|315931086|gb|EFV10060.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni 327]
Length = 177
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|89100743|ref|ZP_01173598.1| transcription antitermination protein NusG [Bacillus sp. NRRL
B-14911]
gi|89084560|gb|EAR63706.1| transcription antitermination protein NusG [Bacillus sp. NRRL
B-14911]
Length = 177
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + +P E ++ G+K +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVETMAMQDKIFRVIVPEEEETDIKNGKKKVVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E+ I+ ++ +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVNVILKRMGVDEKR- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V++GPFA+F G ++ +D++K+++ V V +FGR TPVEL + Q+EK+
Sbjct: 120 -VDIDFEIGETVKVNEGPFANFTGSIEEIDKDKAKIKVLVNMFGRETPVELDFTQIEKL 177
>gi|312141016|ref|YP_004008352.1| transcription antitermination protein nusg [Rhodococcus equi 103S]
gi|311890355|emb|CBH49673.1| transcription antitermination protein NusG [Rhodococcus equi 103S]
Length = 265
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 77 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE-IEHIMNQVE------------ 111
+L++ + D+ + +++TP V GF+G PSP+T +E ++ +M Q
Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196
Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
AA +PV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256
Query: 168 LAYNQVEKI 176
L++NQV+KI
Sbjct: 257 LSFNQVQKI 265
>gi|210135361|ref|YP_002301800.1| transcription antitermination protein NusG [Helicobacter pylori
P12]
gi|210133329|gb|ACJ08320.1| transcription antitermination protein NusG [Helicobacter pylori
P12]
Length = 176
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ PKV F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPKVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|325675347|ref|ZP_08155031.1| transcription antitermination protein NusG [Rhodococcus equi ATCC
33707]
gi|325553318|gb|EGD22996.1| transcription antitermination protein NusG [Rhodococcus equi ATCC
33707]
Length = 265
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 77 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE-IEHIMNQVE------------ 111
+L++ + D+ + +++TP V GF+G PSP+T +E ++ +M Q
Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196
Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
AA +PV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256
Query: 168 LAYNQVEKI 176
L++NQV+KI
Sbjct: 257 LSFNQVQKI 265
>gi|15645817|ref|NP_207994.1| transcription antitermination protein NusG [Helicobacter pylori
26695]
gi|108563567|ref|YP_627883.1| transcription antitermination protein NusG [Helicobacter pylori
HPAG1]
gi|208435099|ref|YP_002266765.1| transcription termination factor [Helicobacter pylori G27]
gi|2499340|sp|P55976|NUSG_HELPY RecName: Full=Transcription antitermination protein nusG
gi|2314365|gb|AAD08249.1| transcription termination factor NusG (nusG) [Helicobacter pylori
26695]
gi|107837340|gb|ABF85209.1| transcription termination factor NusG [Helicobacter pylori HPAG1]
gi|208433028|gb|ACI27899.1| transcription termination factor [Helicobacter pylori G27]
gi|317177947|dbj|BAJ55736.1| transcription antitermination protein NusG [Helicobacter pylori
F16]
Length = 176
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|188527990|ref|YP_001910677.1| transcription antitermination protein NusG [Helicobacter pylori
Shi470]
gi|207091668|ref|ZP_03239455.1| transcription antitermination protein NusG [Helicobacter pylori
HPKX_438_AG0C1]
gi|217032213|ref|ZP_03437711.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128]
gi|217034092|ref|ZP_03439513.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10]
gi|298735784|ref|YP_003728309.1| transcriptional antiterminator NusG [Helicobacter pylori B8]
gi|308183308|ref|YP_003927435.1| transcription antitermination protein NusG [Helicobacter pylori
PeCan4]
gi|308184950|ref|YP_003929083.1| transcription antitermination protein NusG [Helicobacter pylori
SJM180]
gi|188144230|gb|ACD48647.1| transcription antitermination protein NusG [Helicobacter pylori
Shi470]
gi|216943487|gb|EEC22941.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10]
gi|216946084|gb|EEC24695.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128]
gi|261838525|gb|ACX98291.1| transcription termination factor G [Helicobacter pylori 51]
gi|298354973|emb|CBI65845.1| transcriptional antiterminator NusG [Helicobacter pylori B8]
gi|308060870|gb|ADO02766.1| transcription antitermination protein NusG [Helicobacter pylori
SJM180]
gi|308062484|gb|ADO04372.1| transcription antitermination protein NusG [Helicobacter pylori
Cuz20]
gi|308063984|gb|ADO05871.1| transcription antitermination protein NusG [Helicobacter pylori
Sat464]
gi|308065493|gb|ADO07385.1| transcription antitermination protein NusG [Helicobacter pylori
PeCan4]
gi|317009881|gb|ADU80461.1| transcription antitermination protein NusG [Helicobacter pylori
India7]
gi|317012984|gb|ADU83592.1| transcription antitermination protein NusG [Helicobacter pylori
Lithuania75]
Length = 175
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|260887710|ref|ZP_05898973.1| transcription termination/antitermination factor NusG [Selenomonas
sputigena ATCC 35185]
gi|330838618|ref|YP_004413198.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185]
gi|260862590|gb|EEX77090.1| transcription termination/antitermination factor NusG [Selenomonas
sputigena ATCC 35185]
gi|329746382|gb|AEB99738.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185]
Length = 178
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 108/173 (62%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ R+ G++ + + +P E ++ G+K +++ FPG
Sbjct: 6 KWYVIHTYSGYENKVKANLESRVHTMGMEDNIFNVIVPMEEEAEIKDGKKKLVKKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y L++ ++ D+ ++ +++TP V GF+G+G P P++++E++HI+ + A ++PV +
Sbjct: 66 YALVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSEAEVKHILKSMGAEEEKPVVHIDL 125
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V ++ G F +F V V EK +V V V +FGR TP E++YN+VEKI
Sbjct: 126 EVGQAVRINSGTFENFAATVAEVLPEKGKVKVLVEMFGRETPAEVSYNEVEKI 178
>gi|281358732|ref|ZP_06245208.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548]
gi|281314759|gb|EFA98796.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548]
Length = 193
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ S E K + I +L ++G V E IP+E+V VR+G+K + R+ FPG
Sbjct: 14 QWFVIHTLSGHENKVRDKILRQL-QTGDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPG 72
Query: 64 YVLIK-------AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
Y+ ++ ++ +K ++ I+ V+GFLG P+ +T+SE+E IM +A
Sbjct: 73 YIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVEDIMRPAQAGAPE 132
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V + DG F +F G ++ +D E+ ++ + V IFGR TPVEL + QVE+
Sbjct: 133 VKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVERT 192
Query: 177 V 177
V
Sbjct: 193 V 193
>gi|300769745|ref|ZP_07079627.1| transcription termination/antitermination factor NusG
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|300492653|gb|EFK27839.1| transcription termination/antitermination factor NusG
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
Length = 182
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ FPG
Sbjct: 8 RWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + + +
Sbjct: 68 YVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSARH--TE 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I
Sbjct: 126 LDVEVGEQVTIIDGAFSGGSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181
>gi|221632693|ref|YP_002521914.1| transcription termination/antitermination factor NusG
[Thermomicrobium roseum DSM 5159]
gi|221156617|gb|ACM05744.1| transcription termination/antitermination factor NusG
[Thermomicrobium roseum DSM 5159]
Length = 198
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ + V E+ IP + + +R G++ +R+ FPGY
Sbjct: 28 WYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPGY 87
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ ++ D+ +H +++TP V GF+G G P P+ +E E I+ +A ++P +
Sbjct: 88 VLVRMILDDESWHVVRNTPGVTGFVGVGNRPVPLDRAEAEAIIRGAKA--EQPKVRMTLL 145
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V + DGPF F G+V VD EK +V V V FGR TPV L + QVE+
Sbjct: 146 PGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196
>gi|254779750|ref|YP_003057856.1| transcription antitermination protein NusG [Helicobacter pylori
B38]
gi|254001662|emb|CAX29843.1| Transcription antitermination protein NusG [Helicobacter pylori
B38]
Length = 176
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|16330012|ref|NP_440740.1| transcription antitermination protein NusG [Synechocystis sp. PCC
6803]
gi|548397|sp|P36265|NUSG_SYNY3 RecName: Full=Transcription antitermination protein nusG
gi|311688|emb|CAA51202.1| nusG [Synechocystis sp. PCC 6803]
gi|1652499|dbj|BAA17420.1| transcription antitermination protein; NusG [Synechocystis sp. PCC
6803]
Length = 205
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
W+ VQV S CEK+ ++ R+ + + ++ IP +V +RK G +V E + FPG
Sbjct: 23 WFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVEA 112
YVLI+ +M D + +K+TP VI F+G+ + P P++ E+E I V+
Sbjct: 83 YVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVDE 142
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
Q PV + E+G+ + V GPF F G V V E+S++ + IFGR TPVEL + Q
Sbjct: 143 --QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQ 200
Query: 173 VEK 175
VEK
Sbjct: 201 VEK 203
>gi|307637877|gb|ADN80327.1| Transcription antitermination protein [Helicobacter pylori 908]
gi|317014591|gb|ADU82027.1| transcription antitermination protein NusG [Helicobacter pylori
Gambia94/24]
gi|325996474|gb|ADZ51879.1| Transcription antitermination protein [Helicobacter pylori 2018]
gi|325998063|gb|ADZ50271.1| Transcription antitermination protein [Helicobacter pylori 2017]
Length = 175
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|317011405|gb|ADU85152.1| transcription antitermination protein NusG [Helicobacter pylori
SouthAfrica7]
Length = 175
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 106/177 (59%), Gaps = 8/177 (4%)
Query: 5 WYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRF 60
WY +Q YS E KKA+E++ + G + EI +P+E ++ V K K +ER
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNIRGR---IQEIIVPTEDIIEVSKKSKTKVTERSL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P
Sbjct: 60 YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 119 IFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|229497072|ref|ZP_04390776.1| transcription termination/antitermination factor NusG
[Porphyromonas endodontalis ATCC 35406]
gi|229315997|gb|EEN81926.1| transcription termination/antitermination factor NusG
[Porphyromonas endodontalis ATCC 35406]
Length = 184
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 111/176 (63%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSR---SGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
R+Y+++ S EKK E+I +S S + V + +P+E+V++ RK +KV ER +
Sbjct: 9 RFYVLRAISGKEKKVKETIEREMSLPEPSTISQRVFRVVVPTEKVMTQRKTKKVIIERPY 68
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119
GYVLI+ +M+ + + ++D P VIGFLG +NPSP++ +E+E ++++V+ + P V
Sbjct: 69 LSGYVLIECMMSQLLINALRDLPDVIGFLG-NDNPSPLSLAEVEKLLHEVDTTNEGPDVV 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F +GE V + DG F F+ ++ + EK ++ V V IFGR TP+EL Y QVEK
Sbjct: 128 DMQFVLGESVKIIDGAFVGFSATIEEILSEKKKLKVMVKIFGRKTPLELGYAQVEK 183
>gi|153951948|ref|YP_001398490.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. doylei 269.97]
gi|152939394|gb|ABS44135.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. doylei 269.97]
Length = 177
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVYNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|328551802|gb|AEB22294.1| transcription antitermination protein NusG [Bacillus
amyloliquefaciens TA208]
Length = 177
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPF +F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELNETVKVIDGPFTNFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|317504004|ref|ZP_07962011.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella salivae DSM 15606]
gi|315664864|gb|EFV04524.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella salivae DSM 15606]
Length = 181
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I + + L V+++ IP E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAVSGKEAKLKEYIDAEMKHNELLSTHVSQVLIPMEKHASLRNGKRVVKEKISLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A + V HT++ P +GFLG +NPSPV SEI ++ E V
Sbjct: 67 GYIFVEANLVGDVVHTLRFMPNCLGFLGGLDNPSPVLQSEINRMLGTAENTEIEGTVDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V DGPF+ F+G+++ ++ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YVVDETVKVIDGPFSGFSGVIEEINAEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|210632466|ref|ZP_03297394.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279]
gi|210159561|gb|EEA90532.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279]
Length = 179
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 2/175 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-R 59
M+ RWY+V YS E + + R+ G+ + +I IP+ERV +++G K + + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTERVTELKEGGKRDEKDVK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + P
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGGAAPKR 120
Query: 120 SVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+V EVG V V GP + F+G V V E ++V V ++IFGR TPVEL+++Q+
Sbjct: 121 AVVDIEVGTSVRVISGPLSDFDGKVSEVMPEAAKVKVTLMIFGRETPVELSFDQI 175
>gi|167629453|ref|YP_001679952.1| transcription termination/antitermination factor nusg
[Heliobacterium modesticaldum Ice1]
gi|167592193|gb|ABZ83941.1| transcription termination/antitermination factor nusg
[Heliobacterium modesticaldum Ice1]
Length = 176
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ ++ + I +P E V ++ G++ ++R+
Sbjct: 3 MEKLWYVIHTYSGYENKVKANLERRVESMNMEDKIFRILVPMEDEVEIKNGKRKVTKRKV 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++ +MTD ++ +++TP V GF+G G P P+ SE+ HI+ + R
Sbjct: 63 FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGPGTKPIPLQPSEVAHILKSMGYDEARTRHD 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F + E V V GPF F G ++++ EK ++ V V +FGR TPVEL ++QVEK+
Sbjct: 123 --FALKENVRVISGPFQDFVGTIEDIQPEKGKLKVLVSMFGRETPVELDFSQVEKV 176
>gi|284042786|ref|YP_003393126.1| NusG antitermination factor [Conexibacter woesei DSM 14684]
gi|283947007|gb|ADB49751.1| NusG antitermination factor [Conexibacter woesei DSM 14684]
Length = 173
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ R+ V ++ +P+E V ++ ++V +E+R PG
Sbjct: 3 RWYVVNTYSGHENKVKHNLEHRVVSLNQRRAVRQVVVPTESVTEMKDNQRVVTEKRTMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ + + + +K TP V GF+G P P+T +E++ ++++ A +RP S F
Sbjct: 63 YVLVNMDLNEDSWALVKGTPGVTGFVGASNEPVPLTQAEVDRLLHRETA--ERPRSRAQF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GE V V GP + F+G + ++E+ +R+ V V IFGR TPVE+ ++QV+KI
Sbjct: 121 SIGESVKVVSGPLSDFSGEISEINEDGARLKVLVSIFGRETPVEVGFDQVKKI 173
>gi|56961918|ref|YP_173640.1| transcription antitermination protein NusG [Bacillus clausii
KSM-K16]
gi|56908152|dbj|BAD62679.1| transcriptional antitermination factor [Bacillus clausii KSM-K16]
Length = 178
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W++V YS E K ++ R+ + + + +P E ++ G+ R+
Sbjct: 1 MEKNWFVVHTYSGYENKVKANLEKRVESMEMTDHIFRVLVPVEEETEIKNGKTKQVSRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ E+E I+ Q+ V
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLMPDEVERILKQM--GVVEA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V GPFA F G ++ + EK ++ V V +FGR TPVEL + QVEKI
Sbjct: 119 QEEVDFELKESVKVKSGPFADFVGTIEEIQVEKRKLKVHVNMFGRETPVELEFGQVEKI 177
>gi|304315927|ref|YP_003851072.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777429|gb|ADL67988.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 175
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E K ++ + L +L+ +I +P+E+VV ++ G+K + +R+ F
Sbjct: 6 SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQIVVPTEKVVEIKDGKKKSVDRKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K VM D+ ++ +++T V GF+G G P P+T++E+ + ++ +SV
Sbjct: 66 PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEAQTSV 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V GP +F G+V+ + ++ + V + +FGR TPVE + Q++KI
Sbjct: 120 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 174
>gi|284039331|ref|YP_003389261.1| NusG antitermination factor [Spirosoma linguale DSM 74]
gi|283818624|gb|ADB40462.1| NusG antitermination factor [Spirosoma linguale DSM 74]
Length = 186
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S EKK + + R LD ++ ++ IP+E+V +R G+K E+ FFPG
Sbjct: 5 QWYVIRAVSGQEKKIKSYLDNEIIRQKLDEVIPQVLIPAEKVYEMRNGKKRVREKSFFPG 64
Query: 64 YVLIKAVM-TDKVYHTIKDTPKVIGFLG------TGENPSPVTDSEIEHIMNQVEAAVQR 116
Y+LI A + ++ I + P V+GFLG T + P P+ +E+ I+ +V+ Q
Sbjct: 65 YILISADLGNNRALDMILNMPGVLGFLGNSQAGTTSKVPVPLRQAEVNRILGKVDEEAQE 124
Query: 117 PVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +V + GE V V DGPF F G V+ V +++ +V+V V IFGR TPVEL+Y QVEK
Sbjct: 125 VAAPTVAYIKGESVKVVDGPFGGFIGTVEEVFDDRKKVNVVVKIFGRNTPVELSYAQVEK 184
>gi|281425130|ref|ZP_06256043.1| transcription termination/antitermination factor NusG [Prevotella
oris F0302]
gi|299141115|ref|ZP_07034252.1| transcription termination/antitermination factor NusG [Prevotella
oris C735]
gi|281400722|gb|EFB31553.1| transcription termination/antitermination factor NusG [Prevotella
oris F0302]
gi|298577075|gb|EFI48944.1| transcription termination/antitermination factor NusG [Prevotella
oris C735]
Length = 181
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I L + L V+++ IP E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAVSGKEAKLKEYIEAELKHNELLSTHVSQVLIPVEKHASLRNGKRVVKEKISLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A + V HT++ P +GFLG + PSPV SEI ++ E +
Sbjct: 67 GYIFVEANLVGDVAHTLRFMPNCLGFLGGLDEPSPVPQSEINRMLGTAEVTEIEDTVDIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|313677108|ref|YP_004055104.1| transcription antitermination protein nusg [Marivirga tractuosa DSM
4126]
gi|312943806|gb|ADR22996.1| transcription antitermination protein nusG [Marivirga tractuosa DSM
4126]
Length = 183
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 108/178 (60%), Gaps = 7/178 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++V S EKK + ++R ++ + +I IP+E+V +R G+K E+ FFPG
Sbjct: 5 KWYVLRVISGQEKKIKSYLENEIARQKIEDFIPQILIPTEKVYEMRNGKKRVREKNFFPG 64
Query: 64 YVLIKAVMTD-KVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAA--VQRP 117
YV + A ++ + +H I P VIGFLG + P P+ +E+ I+ +V+ +
Sbjct: 65 YVFVSADISHGEAHHVITSIPGVIGFLGGQGDEKEPVPLRQNEVNRILGKVDETEEMDEK 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+S+ + VGE V V DGPF+ F G V+ V EE+ +++V V IFGR TPVEL Y QVEK
Sbjct: 125 LSTPYI-VGESVKVMDGPFSGFTGSVEEVFEERKKLNVMVKIFGRNTPVELNYMQVEK 181
>gi|170077651|ref|YP_001734289.1| transcription antitermination protein NusG [Synechococcus sp. PCC
7002]
gi|169885320|gb|ACA99033.1| transcription termination/antitermination factor NusG
[Synechococcus sp. PCC 7002]
Length = 200
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CE++ ++ R+ + + ++ IP V +RK G + + E + F
Sbjct: 16 PRWYAVQVASGCEQRVKANLEQRIHTLDVADRIFQVQIPQTPTVKIRKDGSRQHGEEKVF 75
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVLI+ + D+ + IK+TP VI F+G + P P++ SE+E I Q
Sbjct: 76 PGYVLIQMTLDDEAWQVIKNTPHVINFVGAEQKRSYGRGRGHVKPVPLSKSEVERIFKQ- 134
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A V P V +G+++ V GPF F G + V E+S++ + IFGR TPVEL +
Sbjct: 135 -AQVVEPTVKVDMAIGDKILVLSGPFKDFEGEIIEVSPERSKLKALLSIFGRDTPVELEF 193
Query: 171 NQVEK 175
QVEK
Sbjct: 194 TQVEK 198
>gi|257784977|ref|YP_003180194.1| NusG antitermination factor [Atopobium parvulum DSM 20469]
gi|257473484|gb|ACV51603.1| NusG antitermination factor [Atopobium parvulum DSM 20469]
Length = 181
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 97/180 (53%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M RWY+V YS E K + R+ GL+ V +I IP+E V V+ G ++ E +
Sbjct: 1 MAKRWYVVHTYSGYENKVKTDLEHRIETYGLERAVVDIQIPTEEVTEVKDGGKRETKESK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV- 118
FPGYVL++ + D + +++TP V GF+G P P+ E + IM + PV
Sbjct: 61 VFPGYVLVRMELDDNTWAVVRNTPGVTGFVGIDGKPVPLRRDEFDKIMRRGGMKTGSPVP 120
Query: 119 --SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ EVG+ + V GP A F+G V V+ E ++ V + IFGR TPVEL +Q+ I
Sbjct: 121 KRTATNIEVGQAIHVLSGPLADFDGTVSEVNAESGKIKVMLTIFGRETPVELTMDQISLI 180
>gi|23097561|ref|NP_691027.1| transcription antitermination protein NusG [Oceanobacillus
iheyensis HTE831]
gi|22775784|dbj|BAC12062.1| transcriptional antiterminator [Oceanobacillus iheyensis HTE831]
Length = 178
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G++ + + +P + ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKMNLEKRVESMGMEDKIFRVIVPEDEEAEIKNGKKKMVKKKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL + VMTD ++ +++TP V GF+G+ G P+P+ EI+ ++ ++ V P
Sbjct: 61 FPGYVLTEMVMTDDSWYVVRNTPGVTGFVGSSGHGAKPTPLMPGEIDVVLKRM--GVSEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V+DGPF F G ++++D +K ++ V V +FGR TPVEL ++QVEK+
Sbjct: 119 TVQVDFEIKENVRVTDGPFTDFTGSIEHIDTDKQKIKVHVNMFGRETPVELDFSQVEKL 177
>gi|218290029|ref|ZP_03494196.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|258512684|ref|YP_003186118.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|218239863|gb|EED07051.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|257479410|gb|ACV59729.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 181
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ R+ G++ + + +P+E V ++ G+K +R+ +PG
Sbjct: 7 QWYVIHTYSGYENKVKSNLESRVQTMGMEDRIFRVVVPTEEAVEIKNGKKRVVQRKTYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD ++ +++TP V GF+G+ G P P+ E+E I++ + +PV+
Sbjct: 67 YVLVEMIMTDDSWYVVRNTPGVTGFVGSPGAGSKPVPLMPHEVEQILSSMGVNEAKPVAQ 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VG+ V ++ GPFA G V+ V E ++ V V +FGR TP+E + QVE +
Sbjct: 127 --FKVGDVVRLTSGPFADMVGTVEEVHPEHQKLKVLVSMFGRETPLEADFTQVEHL 180
>gi|169630973|ref|YP_001704622.1| transcription antitermination protein NusG [Mycobacterium abscessus
ATCC 19977]
gi|169242940|emb|CAM63968.1| Transcription antitermination protein NusG [Mycobacterium
abscessus]
Length = 264
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + +I +P+E V ++ G++ R+ PGY
Sbjct: 71 WYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNGQRKQVNRKVLPGY 130
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEA----------- 112
+L++ + D+ + +++TP V GF+G PSP++ D ++ ++ Q A
Sbjct: 131 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQAPAKKPAKGAASAD 190
Query: 113 ----------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
++RPV V FEVGE V V+DGPFA+ + V+ E+ R+ V V IFGR
Sbjct: 191 AATASSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASISEVNAEQQRLKVLVSIFGR 250
Query: 163 VTPVELAYNQVEKI 176
TPVEL + QVEK+
Sbjct: 251 ETPVELNFTQVEKL 264
>gi|90962215|ref|YP_536131.1| transcription antitermination protein [Lactobacillus salivarius
UCC118]
gi|301299871|ref|ZP_07206105.1| transcription termination/antitermination factor NusG
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821409|gb|ABE00048.1| Transcription antitermination protein [Lactobacillus salivarius
UCC118]
gi|300214879|gb|ADJ79295.1| Transcription antitermination protein nusG [Lactobacillus
salivarius CECT 5713]
gi|300852542|gb|EFK80192.1| transcription termination/antitermination factor NusG
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 186
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVSVRKGRKVNSERRFFP 62
+WY++ Y+ E K E++ R + G++ + + +P E + + + G++ + + FP
Sbjct: 11 KWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKTFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ D EI HI++ E + S
Sbjct: 71 GYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILH--ELGISSRHS 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ EVG+ V + DG F+ G + +D EK ++ V++ +FGR T EL Y+QV+K+V
Sbjct: 129 NFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 186
>gi|227891221|ref|ZP_04009026.1| transcription antitermination protein NusG [Lactobacillus
salivarius ATCC 11741]
gi|227867095|gb|EEJ74516.1| transcription antitermination protein NusG [Lactobacillus
salivarius ATCC 11741]
Length = 201
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVSVRKGRKVNSERRFFP 62
+WY++ Y+ E K E++ R + G++ + + +P E + + + G++ + + FP
Sbjct: 26 KWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKTFP 85
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ D EI HI++ E + S
Sbjct: 86 GYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILH--ELGISSRHS 143
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ EVG+ V + DG F+ G + +D EK ++ V++ +FGR T EL Y+QV+K+V
Sbjct: 144 NFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 201
>gi|187251895|ref|YP_001876377.1| NusG antitermination factor [Elusimicrobium minutum Pei191]
gi|186972055|gb|ACC99040.1| NusG anti-termination factor [Elusimicrobium minutum Pei191]
Length = 178
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIV + E K E I ++ + ++ +P+E VV V++ +KV +R+FFP Y
Sbjct: 7 WYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKRKFFPSY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ +T + Y I++ V GFLG NP P+ + EI I++ + +P + FE
Sbjct: 67 VLVEMDLTSEAYWFIRNVSGVTGFLG-DPNPVPLPEEEIAAILDLTQPGSGKPKHVIEFE 125
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE V +++GPF F G+V+ V+ +K+++ + V +F R TPVEL + QVEKI
Sbjct: 126 AGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEKI 177
>gi|222152115|ref|YP_002561275.1| transcription antitermination factor [Macrococcus caseolyticus
JCSC5402]
gi|222121244|dbj|BAH18579.1| transcription antitermination factor [Macrococcus caseolyticus
JCSC5402]
Length = 181
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V YS E K +++ RL + + + IP E +++ G+K S ++ FPGY
Sbjct: 9 WYAVHTYSGYENKVKDNLEKRLESMNMQDQIFRVVIPEEEETTIKDGKKKTSLKKTFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E + I+ + + V
Sbjct: 69 VLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEAKFILKSM--GMNEKTIDV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE+V V+ GPF + G VK +D EK ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 EIELGEQVRVTSGPFTNQVGEVKEIDAEKYKLTVLVDMFGRETPVEVEFDQIEKL 181
>gi|288554711|ref|YP_003426646.1| transcription antitermination protein NusG [Bacillus pseudofirmus
OF4]
gi|288545871|gb|ADC49754.1| transcription antitermination protein NusG [Bacillus pseudofirmus
OF4]
Length = 177
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + +P E V+ G+ ++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPVEEETEVKNGKTKQVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ VMTD ++ +++TP V GF+G+ G P+ + E E I+ Q+ V P
Sbjct: 61 FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTALLPEEAEAILKQM--GVSEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V +GPFA+F G ++ + +K ++ V V +FGR TPVEL ++QVEKI
Sbjct: 119 KADLDFELKESVKVKEGPFANFIGSIEEIYLDKQKIKVHVNMFGRETPVELEFDQVEKI 177
>gi|257460973|ref|ZP_05626073.1| transcription termination/antitermination factor NusG
[Campylobacter gracilis RM3268]
gi|257441636|gb|EEV16779.1| transcription termination/antitermination factor NusG
[Campylobacter gracilis RM3268]
Length = 176
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I L+ + E+ +P+E V+ V+ ++ ER
Sbjct: 1 MANKWYAIQTYAGSEMAVKRAIEALKQDEALEAKIGEVLVPTEDVIEVKNTKQTIKERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + PS + + +IE I+ ++ + P
Sbjct: 61 YPGYCFANLDLDTTLWHRIQMLPKVSRFIGEAKKPSALPEKDIEIILEKINNR-EAPKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ F+ GE V + DGPFA+FNGIV+ D ++ + V IFGR TP+E++Y+QVEKI+
Sbjct: 120 INFDEGETVRIIDGPFANFNGIVEEYDMIHGKLRLNVSIFGRSTPIEISYSQVEKII 176
>gi|296120709|ref|YP_003628487.1| transcription termination/antitermination factor NusG [Planctomyces
limnophilus DSM 3776]
gi|296013049|gb|ADG66288.1| transcription termination/antitermination factor NusG [Planctomyces
limnophilus DSM 3776]
Length = 204
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++++ SN EK +++ R+ + GL+ EI IP+E+VV + G+K E + +PGY
Sbjct: 31 WYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLYPGY 90
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVF 122
++++ ++ D ++ ++ T V F G+ P+P+ D EI ++ + E + P +
Sbjct: 91 LMVQMILNDDTWYIVRTTGGVGDFTGSAGKPTPMQDHEIARMLQKQEQKQESAAPAMKIE 150
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VG+ V + +G F F G + ++DE +++V V IFGR TPVEL Y Q E+
Sbjct: 151 FAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203
>gi|323465883|gb|ADX69570.1| Transcription antitermination protein nusG [Lactobacillus
helveticus H10]
Length = 199
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 22 QWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ E++ ++ ++P +
Sbjct: 82 YVLVEMVMTDESWYIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTEN 141
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 142 --FEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195
>gi|298490349|ref|YP_003720526.1| NusG antitermination factor ['Nostoc azollae' 0708]
gi|298232267|gb|ADI63403.1| NusG antitermination factor ['Nostoc azollae' 0708]
Length = 209
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G++ SE + FP
Sbjct: 26 RWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPHTPTVKIRKDGKRQPSEEKVFP 85
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ D + +++T VI F+G TG+ P P+++SE+E I Q
Sbjct: 86 GYVLVRMMLNDDTWQVVRNTTHVINFVGAEQKRGTGKGRGHVKPVPLSNSEVERIFKQT- 144
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 145 -SEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203
Query: 172 QVEK 175
QVEK
Sbjct: 204 QVEK 207
>gi|282896127|ref|ZP_06304153.1| NusG antitermination factor [Raphidiopsis brookii D9]
gi|281199045|gb|EFA73920.1| NusG antitermination factor [Raphidiopsis brookii D9]
Length = 209
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + +E + FP
Sbjct: 26 RWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKVFP 85
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ +M+D + +K+T VI F+G + P P+++SE+E I Q
Sbjct: 86 GYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSSRSRGHVKPVPLSNSEVERIFKQ-- 143
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 144 TTEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203
Query: 172 QVEK 175
QV+K
Sbjct: 204 QVQK 207
>gi|157690884|ref|YP_001485346.1| transcription antitermination protein NusG [Bacillus pumilus
SAFR-032]
gi|194017580|ref|ZP_03056191.1| transcription termination/antitermination factor NusG [Bacillus
pumilus ATCC 7061]
gi|157679642|gb|ABV60786.1| transcription antiterminator NusG [Bacillus pumilus SAFR-032]
gi|194010852|gb|EDW20423.1| transcription termination/antitermination factor NusG [Bacillus
pumilus ATCC 7061]
Length = 177
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRM--GLEER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|318040711|ref|ZP_07972667.1| transcription antitermination protein NusG [Synechococcus sp.
CB0101]
Length = 226
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+D+ + EI IP V ++K G + ++E + FP
Sbjct: 43 RWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPAVKLKKDGSRTSTEEKVFP 102
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 103 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 160
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++PV V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 161 AAEKKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 220
Query: 172 QVEK 175
Q+ K
Sbjct: 221 QISK 224
>gi|283954236|ref|ZP_06371760.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 414]
gi|283794254|gb|EFC32999.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 414]
Length = 177
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 7/179 (3%)
Query: 2 TPRWYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
T +WY +Q Y+ E K+A+E++ +G++ + EI +P+E V+ + G++ SER
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLA---KDNGIEEQLKEIVVPTEDVIEFKNGKEKISER 59
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+ GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P
Sbjct: 60 SLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PK 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V + +GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 119 PKISFEEGENVRIIEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|282899203|ref|ZP_06307177.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505]
gi|281195886|gb|EFA70809.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505]
Length = 209
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + +E + FP
Sbjct: 26 RWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKVFP 85
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ +M+D + +K+T VI F+G + P P+++SE+E I Q
Sbjct: 86 GYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSGRSRGHVKPVPLSNSEVERIFKQ-- 143
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 144 TTEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203
Query: 172 QVEK 175
QV+K
Sbjct: 204 QVQK 207
>gi|187776563|ref|ZP_02993036.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC
15579]
gi|187775222|gb|EDU39024.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC
15579]
Length = 174
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L H + +I +P E V V+ G+K + ++ FPG
Sbjct: 7 KWYVVHTYSGYENKVKVNLQKTVDNRDLHHWILDIQVPMEEQVEVKDGKKKITLKKTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +MTD ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 67 YVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LSMGIKEKQPEVDV 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V GP F ++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 121 EVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173
>gi|20808673|ref|NP_623844.1| transcription antitermination protein NusG [Thermoanaerobacter
tengcongensis MB4]
gi|20517309|gb|AAM25448.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
Length = 174
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V YS E K ++ + L + +I +P+E+V ++ G+K ER+ F
Sbjct: 6 TAKWYVVHTYSGYENKVKANLEKIIENRNLQDKILQIVVPTEKVTEIKDGKKKVVERKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +MTD+ ++ +++T V GF+G G P P+TD+E+ + ++ ++V
Sbjct: 66 PGYVLVKMIMTDETWYVVRNTRGVTGFVGPGSKPVPLTDAEVRAL------GIKDVSTAV 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ V E+ + V + +FGR TPVE Q++KI
Sbjct: 120 DLNVKDTVRVVSGPFENFIGVVQEVYPERQKAKVLISMFGRETPVEFDLVQLQKI 174
>gi|323705648|ref|ZP_08117222.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535125|gb|EGB24902.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 176
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E K ++ + L +L+ ++ +P+E+VV ++ G+K + +R+ F
Sbjct: 7 SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQVVVPTEKVVEIKDGKKKSVDRKVF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K VM D+ ++ +++T V GF+G G P P+T++E+ + ++ +SV
Sbjct: 67 PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEIQTSV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V GP +F G+V+ + ++ + V + +FGR TPVE + Q++KI
Sbjct: 121 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 175
>gi|327182886|gb|AEA31333.1| transcription termination/antitermination factor NusG
[Lactobacillus amylovorus GRL 1118]
Length = 185
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++ + P ++
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTAN 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 128 --FDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|315037590|ref|YP_004031158.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112]
gi|312275723|gb|ADQ58363.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112]
Length = 185
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDVLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++ + P ++
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTAN 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 128 --FDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|300857259|ref|YP_003782243.1| transcription antitermination protein NusG [Clostridium ljungdahlii
DSM 13528]
gi|300437374|gb|ADK17141.1| transcription antitermination protein NusG [Clostridium ljungdahlii
DSM 13528]
Length = 173
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L + ++ +P E V ++ G+K + ++ FPG
Sbjct: 6 KWYVVHTYSGYENKVKVNLEKTIENRNLYDWIDDVQVPMEEQVEIKDGKKKITLKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +MTD ++ +++T V GF+G G P P+TD E++ + ++PV +V
Sbjct: 66 YVLIHMIMTDDSWYIVRNTRGVTGFVGPGSKPVPLTDEEVKDM-----GISEKPV-NVDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +F +++ ++ EK ++ V +FGR TPVEL +NQ+EKI
Sbjct: 120 SVGENVKVKSGPLENFLAVIQEINTEKRKIKALVNMFGRETPVELDFNQIEKI 172
>gi|325844403|ref|ZP_08168130.1| transcription termination/antitermination factor NusG [Turicibacter
sp. HGF1]
gi|325489077|gb|EGC91461.1| transcription termination/antitermination factor NusG [Turicibacter
sp. HGF1]
Length = 178
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ Y+ E K + ++ R+ + + + IP E+ V ++ G + R+
Sbjct: 1 MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ + TD ++ +++TP V GFLG+ G P P+ E+ I+ ++ +
Sbjct: 61 FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVMPILKKM--GITSV 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
S+ +VG+RV V+ GPF+ G ++++D+E S+V V V +FGR TPVEL +NQ+
Sbjct: 119 EVSLDIQVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174
>gi|302336397|ref|YP_003801604.1| transcription antitermination protein nusG [Olsenella uli DSM 7084]
gi|301320237|gb|ADK68724.1| transcription antitermination protein nusG [Olsenella uli DSM 7084]
Length = 182
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M RWY+V YS E K + R+ GL+ + +I IP+E V ++ G ++ E +
Sbjct: 1 MAKRWYVVHTYSGYENKVKTDLEHRIETYGLEDQIVDIQIPTEEVTEIKDGGKRETKESK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPV 118
FPGYVL++ + D + +++TP V GF+G P+P+ SE IM + Q P
Sbjct: 61 VFPGYVLVRMDVDDNSWAVVRNTPGVTGFVGIDGKPTPLRRSEFNKIMRRTNPRGAQEPK 120
Query: 119 SSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG+ V V GP A F+G+V V E +V V + IFGR TPVEL +Q+
Sbjct: 121 RTTMTTDLEVGQAVKVVSGPLADFDGLVSEVMPEAGKVKVMLTIFGRETPVELTLDQIAT 180
Query: 176 I 176
I
Sbjct: 181 I 181
>gi|260102419|ref|ZP_05752656.1| transcription antitermination protein NusG [Lactobacillus
helveticus DSM 20075]
gi|260083787|gb|EEW67907.1| transcription antitermination protein NusG [Lactobacillus
helveticus DSM 20075]
gi|328462980|gb|EGF34788.1| transcription termination/antitermination factor NusG
[Lactobacillus helveticus MTCC 5463]
Length = 185
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R+ G+ + + +P E V +G+K E + FPG
Sbjct: 8 QWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E++ ++ ++P +
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTEN 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 128 --FEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|325956072|ref|YP_004286682.1| transcription termination/antitermination factor NusG
[Lactobacillus acidophilus 30SC]
gi|325332637|gb|ADZ06545.1| transcription termination/antitermination factor NusG
[Lactobacillus acidophilus 30SC]
Length = 185
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++ + P ++
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTAN 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 128 --FDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|227494532|ref|ZP_03924848.1| transcription termination/antitermination factor [Actinomyces
coleocanis DSM 15436]
gi|226832266|gb|EEH64649.1| transcription termination/antitermination factor [Actinomyces
coleocanis DSM 15436]
Length = 245
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E++ ++ R+ +++ + E +P E V + K K ER PGY
Sbjct: 64 WYVIHTYSGHERRVKANLEQRIQTQNMENFIFEAEVPMETVTELTKSGKKTVERPRIPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVS---- 119
V+++ +MT+ + +KDTP V+GF+G +NP P++ E+ ++ + EA+ + +
Sbjct: 124 VIVRTIMTEASWRVVKDTPAVLGFVGDAQNPVPLSIDEVVSLLAPMWEASALKKAAATEI 183
Query: 120 ----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ FE+GE V V DGPF S V +D ++ V ++IF R TP+EL ++QV+K
Sbjct: 184 ITAPAITFEIGESVTVVDGPFESMEATVTEIDAAHRKLTVSILIFERETPIELNFDQVKK 243
Query: 176 I 176
+
Sbjct: 244 L 244
>gi|291276547|ref|YP_003516319.1| putative transcription antitermination protein [Helicobacter
mustelae 12198]
gi|290963741|emb|CBG39576.1| putative transcription antitermination protein [Helicobacter
mustelae 12198]
Length = 173
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q YS E+ +++ L + ++ I +P+E V + G+K+ +R
Sbjct: 1 MLLDWYAIQTYSGSEQSVEKAVKNLLDNANIE---CRIVVPTEDVFEYKNGKKITKKRSI 57
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV I+ +T ++H I+ PKV F+G + P+P++ ++ I+ +VE P
Sbjct: 58 YPGYVFIQVNLTTSIWHMIQRLPKVSKFIGEDKKPTPLSREDVASILEKVEKR-SDPKPK 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++F GE V + +GPF +F +V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 117 IYFGKGEIVRIINGPFINFTAMVEEYDVEHEKLKLNVSIFGRNTPIEILYSQVEKIV 173
>gi|148381434|ref|YP_001255975.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A str. ATCC 3502]
gi|153933840|ref|YP_001385809.1| transcription antitermination protein NusG [Clostridium botulinum A
str. ATCC 19397]
gi|153936508|ref|YP_001389216.1| transcription antitermination protein NusG [Clostridium botulinum A
str. Hall]
gi|153940614|ref|YP_001392847.1| transcription antitermination protein NusG [Clostridium botulinum F
str. Langeland]
gi|168178819|ref|ZP_02613483.1| transcription termination/antitermination factor NusG [Clostridium
botulinum NCTC 2916]
gi|168181851|ref|ZP_02616515.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Bf]
gi|170755479|ref|YP_001783134.1| transcription antitermination protein NusG [Clostridium botulinum
B1 str. Okra]
gi|170761546|ref|YP_001788834.1| transcription antitermination protein NusG [Clostridium botulinum
A3 str. Loch Maree]
gi|226950946|ref|YP_002806037.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A2 str. Kyoto]
gi|237796955|ref|YP_002864507.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Ba4 str. 657]
gi|148290918|emb|CAL85054.1| transcription antitermination protein [Clostridium botulinum A str.
ATCC 3502]
gi|152929884|gb|ABS35384.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A str. ATCC 19397]
gi|152932422|gb|ABS37921.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A str. Hall]
gi|152936510|gb|ABS42008.1| transcription termination/antitermination factor NusG [Clostridium
botulinum F str. Langeland]
gi|169120691|gb|ACA44527.1| transcription termination/antitermination factor NusG [Clostridium
botulinum B1 str. Okra]
gi|169408535|gb|ACA56946.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A3 str. Loch Maree]
gi|182670290|gb|EDT82266.1| transcription termination/antitermination factor NusG [Clostridium
botulinum NCTC 2916]
gi|182674794|gb|EDT86755.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Bf]
gi|226842758|gb|ACO85424.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A2 str. Kyoto]
gi|229263161|gb|ACQ54194.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Ba4 str. 657]
gi|295320826|gb|ADG01204.1| transcription termination/antitermination factor NusG [Clostridium
botulinum F str. 230613]
gi|322807819|emb|CBZ05394.1| transcription antitermination protein NusG [Clostridium botulinum
H04402 065]
Length = 174
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L H + +I +P E V V+ G+K + ++ FPG
Sbjct: 7 KWYVVHTYSGYENKVKVNLQKTVDNRNLHHWIFDIQVPMEEQVEVKDGKKKITLKKTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +MTD ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 67 YVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LSMGIKEKQPEVDV 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V GP F ++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 121 EVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173
>gi|290968177|ref|ZP_06559722.1| transcription termination/antitermination factor NusG [Megasphaera
genomosp. type_1 str. 28L]
gi|290781852|gb|EFD94435.1| transcription termination/antitermination factor NusG [Megasphaera
genomosp. type_1 str. 28L]
Length = 179
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 106/172 (61%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + ++ ++ GL++++ I +P E V ++ G+K +R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVMATLERKVKSMGLENVINRILVPMEDEVDMKDGKKRTVKRKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ +++TP V GF+G+ P+P+T+ E++ I+ + P +
Sbjct: 66 YVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPTPLTEEEVKSILKS-QGVDAEPKIQIAV 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++GE+V ++ GPF +F + +++EK + + +FGR T VE+ Y+Q+EK
Sbjct: 125 DIGEQVRITSGPFENFIATITEINKEKGTLKGLIDMFGRETSVEVDYSQIEK 176
>gi|220927765|ref|YP_002504674.1| NusG antitermination factor [Clostridium cellulolyticum H10]
gi|219998093|gb|ACL74694.1| NusG antitermination factor [Clostridium cellulolyticum H10]
Length = 172
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG
Sbjct: 6 KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P++D E++ + V+ V +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDEEVKAM------GVEEFAPEVDY 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EV + V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI
Sbjct: 120 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 172
>gi|261880900|ref|ZP_06007327.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
bergensis DSM 17361]
gi|270332408|gb|EFA43194.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
bergensis DSM 17361]
Length = 182
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSG--LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+++V S E K E I + S DH V+++ IP E+ V++R G++V ++ P
Sbjct: 8 WYVLRVVSGKEAKVKEYIEAEMKHSTQLADH-VSQVLIPMEKHVAIRNGKRVEKDKTSMP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A + V ++ P +GF+G +NPSPV S+I ++ E + S+
Sbjct: 67 GYIFVEAELNGDVAAALRFMPNCLGFIGGLDNPSPVPQSQINRMLGAAEESDMDNEVSIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + E V V DGPF+ F GI++ V+ EK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 127 YVLDETVKVVDGPFSGFEGIIEEVNTEKRKLKVMVKIFGRKTPLELSFMQVEKV 180
>gi|57242443|ref|ZP_00370381.1| transcription termination/antitermination factor NusG
[Campylobacter upsaliensis RM3195]
gi|315639013|ref|ZP_07894183.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Campylobacter upsaliensis JV21]
gi|57016728|gb|EAL53511.1| transcription termination/antitermination factor NusG
[Campylobacter upsaliensis RM3195]
gi|315480925|gb|EFU71559.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Campylobacter upsaliensis JV21]
Length = 177
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY +Q Y+ E +I + + ++ + EI +P+E V+ + G++ SER + G
Sbjct: 5 KWYAIQTYAGSEMAVKRAIENLVKDNKIEERLKEIVVPTEDVIEFKNGKEKISERSLYSG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + +++H I+ PKV F+G +NP+P+++ +I I+ + P + F
Sbjct: 65 YVFANLNLDTELWHRIQSLPKVGRFIGESKNPTPLSEKDINLILEKAYNKAA-PKPKISF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V +++GPFA+F GIV+ D + + + V IFGR TPVE+ Y+QVEK++
Sbjct: 124 EEGENVRITEGPFANFTGIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKVI 177
>gi|326203307|ref|ZP_08193172.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782]
gi|325986565|gb|EGD47396.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782]
Length = 179
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG
Sbjct: 13 KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P++D E++ + V+ V +
Sbjct: 73 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDDEVKAM------GVEEFAPEVDY 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EV + V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI
Sbjct: 127 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 179
>gi|225164274|ref|ZP_03726545.1| NusG antitermination factor [Opitutaceae bacterium TAV2]
gi|224801116|gb|EEG19441.1| NusG antitermination factor [Opitutaceae bacterium TAV2]
Length = 192
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ + S E K I ++ L + E+ +P+E V V+ G+K R+ +PG
Sbjct: 12 QWFALHTLSGQENKVKLYIDKFIAPEELSDYIFEVLLPTEVVSEVKNGKKTTKTRKLYPG 71
Query: 64 YVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
YV + A + D K ++ +K+T VIGF+G G+ P+ + SEI+ I ++EAA +
Sbjct: 72 YVFVHAKLFDEEKKLINKPWYFMKETAGVIGFVG-GDKPAALRQSEIDEIRARIEAASGK 130
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V +EVGE + ++DG FA+ G + +D E+ ++ + V IFGR TPVEL Y QV++I
Sbjct: 131 EVPKVSYEVGEELKITDGAFANLTGRIDEIDPERGKLKISVSIFGRFTPVELEYWQVQRI 190
>gi|311070748|ref|YP_003975671.1| transcription antitermination protein NusG [Bacillus atrophaeus
1942]
gi|310871265|gb|ADP34740.1| transcription antitermination protein NusG [Bacillus atrophaeus
1942]
Length = 177
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|293375376|ref|ZP_06621657.1| transcription termination/antitermination factor NusG [Turicibacter
sanguinis PC909]
gi|292645929|gb|EFF63958.1| transcription termination/antitermination factor NusG [Turicibacter
sanguinis PC909]
Length = 178
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ Y+ E K + ++ R+ + + + IP E+ V ++ G + R+
Sbjct: 1 MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ + TD ++ +++TP V GFLG+ G P P+ E+ I+ ++ +
Sbjct: 61 FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVVPILKKM--GITSV 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
S+ +VG+RV V+ GPF+ G ++++D+E S+V V V +FGR TPVEL +NQ+
Sbjct: 119 EVSLDIQVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174
>gi|157738108|ref|YP_001490792.1| transcription antitermination protein NusG [Arcobacter butzleri
RM4018]
gi|315636460|ref|ZP_07891702.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Arcobacter butzleri JV22]
gi|157699962|gb|ABV68122.1| transcription termination factor NusG [Arcobacter butzleri RM4018]
gi|315479241|gb|EFU69932.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Arcobacter butzleri JV22]
Length = 175
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 107/181 (59%), Gaps = 10/181 (5%)
Query: 1 MTPRWYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
M +WY +Q YS E KKA+ +L+ D + E+ +P+E ++ ++KG+K E
Sbjct: 1 MAHKWYAIQTYSGSELSVKKALI----KLAEEMADDRIQEVLVPTEDLIEIKKGKKTIVE 56
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQR 116
R +P Y K + ++H I+ PKV F+G + P+ ++D +I I+ +V+ A +
Sbjct: 57 RPLYPAYAFAKIDLDTGLWHRIQSMPKVGRFIGESKKPTALSDKDINLILEKVKNRAAAK 116
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
P V F+ GE V +++G FA+FNG+V++ D + + V IFGR TPVE++Y QVE+I
Sbjct: 117 P--KVSFDTGEMVRINEGAFANFNGLVEDFDMVSGILKLNVSIFGRNTPVEISYTQVERI 174
Query: 177 V 177
V
Sbjct: 175 V 175
>gi|310659520|ref|YP_003937241.1| transcription termination factor [Clostridium sticklandii DSM 519]
gi|308826298|emb|CBH22336.1| transcription termination factor [Clostridium sticklandii]
Length = 180
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K +I ++ G++ L+ ++ +P E VV + G++ +R+ FPG
Sbjct: 10 KWYVIHTYSGHENKVKATIEKAVANRGMEDLIQDVAVPVEDVVENKNGKEKIRQRKVFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK ++TD+ ++ +++T V GF+G P +T E+E++ + + + V F
Sbjct: 70 YVLIKMIVTDESWYVVRNTKGVTGFVGPNSKPVALTAEEVENMGVEKQKSFDLVVD---F 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+++ VS GPF F G ++ ++ +K V + +FGR TPVEL + QV+K+
Sbjct: 127 SIGDKIQVSGGPFDGFAGTIEEINHDKKHAKVNISMFGRETPVELEFYQVKKV 179
>gi|322381140|ref|ZP_08055143.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154716|gb|EFX46987.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
Length = 180
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ + + + +P E + + G+K R+
Sbjct: 4 MEKRWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPMEEELVNKDGKKKTVMRKV 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ + TD ++ +++TP V GF+ G+G P+P+ E++ I+ + ++ P
Sbjct: 64 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHM--GIEEP 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F + E V V GPFA+F G V+ + EKS++ V V +FGR TP+EL ++QVEK+
Sbjct: 122 KPKIDFNLKETVRVKVGPFANFVGTVEEIIPEKSKLKVHVNMFGRETPLELDFDQVEKL 180
>gi|58336696|ref|YP_193281.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM]
gi|227903259|ref|ZP_04021064.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC
4796]
gi|58254013|gb|AAV42250.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM]
gi|227869064|gb|EEJ76485.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC
4796]
Length = 185
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E V +G+K E + FPG
Sbjct: 8 KWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ + P
Sbjct: 68 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLDEEVSRLLKNQGQPAKTPTED 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K
Sbjct: 128 --FDIGETVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKF 181
>gi|254517457|ref|ZP_05129513.1| transcription antitermination protein NusG [Clostridium sp.
7_2_43FAA]
gi|226911206|gb|EEH96407.1| transcription antitermination protein NusG [Clostridium sp.
7_2_43FAA]
Length = 173
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L L+ +I +P E VV + G++ S ++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLQSLLQDIQVPMEEVVEEKDGKQKISLKKKFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +MTD+ ++ +++T V GF+G P P+TD E+E + VQ +
Sbjct: 66 YVLVKMLMTDESWYVVRNTRGVTGFVGPASKPVPLTDEEVESM------GVQEAPVEIDL 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE V V GP F I++ ++ EK ++ + +FGR T EL + QVEK+V
Sbjct: 120 EVGESVRVISGPLREFVAIIQEINLEKRKIKALIDMFGRETLAELEFTQVEKLV 173
>gi|322379403|ref|ZP_08053773.1| transcription antitermination protein NusG [Helicobacter suis HS1]
gi|322379973|ref|ZP_08054247.1| transcription antitermination protein NusG [Helicobacter suis HS5]
gi|321147601|gb|EFX42227.1| transcription antitermination protein NusG [Helicobacter suis HS5]
gi|321148112|gb|EFX42642.1| transcription antitermination protein NusG [Helicobacter suis HS1]
Length = 175
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ +++ + +G+ + V ++ +P+E V+ + +KG+ +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAVENMVRENGIANRVEKVIVPTEDVIELSKKGKNKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ PKV F+G + P+P++D++I +I+ ++ A P +++
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPKVSRFIGESKKPTPLSDADIGNILEKM-ANRAAPKPKIYY 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V + +GPFA+F V+ D E ++ + V IFGR T +++ Y+QVEKI+
Sbjct: 122 EKGEVVRIVEGPFANFTATVEEYDVEHRKLKLSVSIFGRNTLIDILYSQVEKII 175
>gi|17232791|ref|NP_489339.1| transcription antitermination protein NusG [Nostoc sp. PCC 7120]
gi|17134438|dbj|BAB76998.1| transcription antitermination protein [Nostoc sp. PCC 7120]
Length = 210
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E + FP
Sbjct: 27 RWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKVFP 86
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ VM D + +++T VI F+G TG+ P P++ SE+E I Q
Sbjct: 87 GYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQT- 145
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 146 -TEQEPVVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 204
Query: 172 QVEK 175
QVEK
Sbjct: 205 QVEK 208
>gi|300865662|ref|ZP_07110433.1| transcription antitermination protein NusG [Oscillatoria sp. PCC
6506]
gi|300336340|emb|CBN55583.1| transcription antitermination protein NusG [Oscillatoria sp. PCC
6506]
Length = 211
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RW+ VQV S CEK+ ++ R+ ++ + E+ IP + + K G + +S+ + FP
Sbjct: 28 RWFAVQVASGCEKRVKANLEQRIQTLDVNDRILEVEIPQTPAIKLGKDGARRHSDEKVFP 87
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ +M ++ + +K+TP VI F+G + P P+++SE+E I Q +
Sbjct: 88 GYVLVRMLMDEETWQIVKNTPNVINFVGAEQKRRYGRGRGHVKPLPLSNSEVERIFRQTQ 147
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A PV V G+ V V GPF F G V V E++++ V + IFGR TPVEL +N
Sbjct: 148 EA--EPVVKVSMAAGDHVVVLSGPFKDFEGDVIEVSPERNKLKVLLSIFGRDTPVELEFN 205
Query: 172 QVEK 175
QV+K
Sbjct: 206 QVQK 209
>gi|323342433|ref|ZP_08082665.1| transcription antitermination factor NusG [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463545|gb|EFY08739.1| transcription antitermination factor NusG [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 181
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E + E++ R+ G++ + I + E+ + + G+KV R FPG
Sbjct: 8 KWYVVNTYSGHENRVKENLERRVESMGIEDALFRILVAEEKEIEYKNGKKVEKLRNLFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ ++ +MTD+ ++ +++TP V GF+G+ G P PV+D EIE I+ ++ + Q+ +
Sbjct: 68 YLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSDEEIESILRRMGMSDQKLI-- 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+ G+ V + GPFA G V +++ + + ++FGR TP E++Y +E +
Sbjct: 126 VNFKEGDTVRILSGPFAGIEGTVDSMNNDSQTAMILTILFGRETPTEISYTDIEAL 181
>gi|125975201|ref|YP_001039111.1| transcription antitermination protein nusG [Clostridium
thermocellum ATCC 27405]
gi|256003137|ref|ZP_05428129.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|281419560|ref|ZP_06250571.1| NusG antitermination factor [Clostridium thermocellum JW20]
gi|125715426|gb|ABN53918.1| transcription antitermination protein nusG [Clostridium
thermocellum ATCC 27405]
gi|255992828|gb|EEU02918.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|281406782|gb|EFB37049.1| NusG antitermination factor [Clostridium thermocellum JW20]
gi|316939365|gb|ADU73399.1| NusG antitermination factor [Clostridium thermocellum DSM 1313]
Length = 177
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L + +I +P E + ++ G+K S ++ FPG
Sbjct: 11 KWYVVHTYSGYENKVKANLEKIVENRNLQDYILDIVVPMEEQIEIKDGKKKASLKKVFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M D+ ++ +++T V GF+G G P+TD EI + V+ + +
Sbjct: 71 YVLVKMIMNDESWYVVRNTRGVTGFVGPGSKAVPLTDEEIRAM------GVEEFAPVLDY 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GP +F GIV+ ++ EK +V V V +FGR TPVEL +Q++KI
Sbjct: 125 EVGDNVRVVSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELHQIQKI 177
>gi|319654854|ref|ZP_08008929.1| transcription antitermination protein NusG [Bacillus sp.
2_A_57_CT2]
gi|317393417|gb|EFV74180.1| transcription antitermination protein NusG [Bacillus sp.
2_A_57_CT2]
Length = 177
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETELKNGKKKVVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E+ +I+ + V+
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVTNILKHM--GVEEA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA+F G ++++D++K+++ V V +FGR TPVEL ++Q+EK+
Sbjct: 119 RFDINFEIGETVQVKEGPFANFTGTIEDIDKDKAKIKVLVNMFGRDTPVELDFSQIEKL 177
>gi|218296037|ref|ZP_03496806.1| NusG antitermination factor [Thermus aquaticus Y51MC23]
gi|218243414|gb|EED09943.1| NusG antitermination factor [Thermus aquaticus Y51MC23]
Length = 184
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E+KA ++ R+ G++ + ++ IP+E VV VR+G +K +R+
Sbjct: 1 MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVEVREGGKKEVVKRK 60
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ ++ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 61 LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ EK +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVGFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180
Query: 173 VEK 175
V K
Sbjct: 181 VVK 183
>gi|75908765|ref|YP_323061.1| transcription antitermination protein NusG [Anabaena variabilis
ATCC 29413]
gi|75702490|gb|ABA22166.1| transcription antitermination protein nusG [Anabaena variabilis
ATCC 29413]
Length = 210
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E + FP
Sbjct: 27 RWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKVFP 86
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ VM D + +++T VI F+G TG+ P P++ SE+E I Q
Sbjct: 87 GYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQT- 145
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
Q P+ + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 146 -TEQEPIVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 204
Query: 172 QVEK 175
QVEK
Sbjct: 205 QVEK 208
>gi|317178500|dbj|BAJ56288.1| transcription antitermination protein NusG [Helicobacter pylori
F30]
Length = 176
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V K K +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ +V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLSRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|315925316|ref|ZP_07921527.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621217|gb|EFV01187.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 179
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+WY+ YS E K SI + G++ ++ ++ +P++ VV + G+KV E++ FP
Sbjct: 9 PQWYVAHTYSGYENKVKASIEATVEHRGMEDVILQVEVPTQDVVETKNGKKVIKEKKLFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV+++ MTD ++ +++T V GF+G P P++ E+ + ++R +
Sbjct: 69 GYVIVQMYMTDDSWYVVRNTRGVTGFVGPASKPVPLSPEELRKM------GIRRQQVEID 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG++V + DGPF G V+ ++ EKS++ V + +FGR T EL ++Q EK+
Sbjct: 123 LAVGDQVKIIDGPFEGMAGEVEVINLEKSKIKVNLSVFGRETLTELDFDQAEKL 176
>gi|224436430|ref|ZP_03657447.1| transcription antitermination protein NusG [Helicobacter cinaedi
CCUG 18818]
gi|313142944|ref|ZP_07805137.1| transcription termination factor NusG [Helicobacter cinaedi CCUG
18818]
gi|313127975|gb|EFR45592.1| transcription termination factor NusG [Helicobacter cinaedi CCUG
18818]
Length = 171
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +Q YS EK E+I + ++ + E+ +P+E ++ +K K+ +R +PGY
Sbjct: 3 WYAIQTYSGSEKSVGEAIRNLIVQNQMQDRFGEVVVPTESIIETKK--KI-VDRSLYPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V I+ + K++H I+ P+V F+G + P+P+++++I I+ +V P + FE
Sbjct: 60 VFIQVDLDTKLWHMIQSLPRVGRFIGESKKPTPLSEADIAKILEKVRNP-SAPKPKISFE 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GE V + DGPF +F G V+ D E ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 119 QGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRNTPVEILYSQVEKIV 171
>gi|313887246|ref|ZP_07820940.1| transcription termination/antitermination factor NusG
[Porphyromonas asaccharolytica PR426713P-I]
gi|312923299|gb|EFR34114.1| transcription termination/antitermination factor NusG
[Porphyromonas asaccharolytica PR426713P-I]
gi|332177000|gb|AEE12690.1| NusG antitermination factor [Porphyromonas asaccharolytica DSM
20707]
Length = 180
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R+Y+++V S EKK E I S L V + +P+E+VVS R G+KV ER + PG
Sbjct: 2 RFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT----GE-NPSPVTDSEIEHIMNQVEAAVQRPV 118
YVL++A + HT+ P VIGFL + G+ +P P+ E++ ++ Q + +
Sbjct: 62 YVLVEAALVGDTEHTLCTIPNVIGFLNSRMSDGQLSPEPLRTQEVQDLLGQADRDAEGAG 121
Query: 119 S-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V + DGPF+ F+ + V +K ++ V V IFGR TP+EL Y QVEK
Sbjct: 122 RFDVEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179
>gi|161506934|ref|YP_001576888.1| transcription antiterminator [Lactobacillus helveticus DPC 4571]
gi|160347923|gb|ABX26597.1| transcription antiterminator [Lactobacillus helveticus DPC 4571]
Length = 185
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R+ G+ + + +P E V +G+K E + FPG
Sbjct: 8 QWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E++ ++ ++P +
Sbjct: 68 YVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTEN 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K
Sbjct: 128 --FEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKF 181
>gi|289523625|ref|ZP_06440479.1| transcription termination/antitermination factor NusG
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503317|gb|EFD24481.1| transcription termination/antitermination factor NusG
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 180
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 99/173 (57%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q Y+ E K ++ R++ G++ + + +P E V V+ G++ +R+ FPG
Sbjct: 8 RWYVIQTYAGYENKVKANLEQRIATMGMEDKIFRVLVPMEERVYVKDGKQKKVKRKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L++ ++ D+ ++ ++ TP V GF+G G NP P++D E++ + ++ +P +
Sbjct: 68 YILVEMILDDQSWYVVRHTPGVTGFVGAGNNPIPLSDREVQDVFAKIGREQMKPKVEIDL 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ + V GPF G V V EK +V V +FGR T VE YN + KI
Sbjct: 128 KPGDVIRVKSGPFEGQAGTVVEVIPEKGKVKFSVTLFGRETIVEADYNDLTKI 180
>gi|297582435|ref|YP_003698215.1| NusG antitermination factor [Bacillus selenitireducens MLS10]
gi|297140892|gb|ADH97649.1| NusG antitermination factor [Bacillus selenitireducens MLS10]
Length = 177
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + I +P E V+ G+ ++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMEMTDKIFRILVPVEEENEVKNGKSKVVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ VMTD ++ +++TP V GF+G+ G P+ + E + I+ Q+ V+ P
Sbjct: 61 FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALLPDEADAILRQM--GVEAP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V F++ E V V +GPFA+F G ++++ EK ++ V V +FGR TPVEL ++QVEKI
Sbjct: 119 KAEVDFDLKESVKVKEGPFANFIGSIEDISAEKRKLKVHVNMFGRETPVELDFHQVEKI 177
>gi|118467542|ref|YP_885732.1| transcription antitermination protein NusG [Mycobacterium smegmatis
str. MC2 155]
gi|118168829|gb|ABK69725.1| transcription antitermination protein NusG [Mycobacterium smegmatis
str. MC2 155]
Length = 280
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 90 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 149
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ + D+ + +++TP V GF+G PSP++ D ++ ++ Q
Sbjct: 150 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQGAAKKPGKAAAAAA 209
Query: 110 ----VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 210 SAASTEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 269
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 270 VELTFNQVAKI 280
>gi|323344615|ref|ZP_08084839.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella oralis ATCC 33269]
gi|323093885|gb|EFZ36462.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella oralis ATCC 33269]
Length = 181
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL--DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+++ S E K E I + + L H V ++ IP E+ S+R G++V E+ P
Sbjct: 8 WYVLRAVSGKEAKLKEYIEAEMKHNELLASH-VYQVLIPVEKHASLRNGKRVEKEKISLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++A++ V HT++ P +GFLG ++PSPV S+I ++ E V
Sbjct: 67 GYVFVEAILKGDVAHTLRFMPNCLGFLGGLDDPSPVPQSDINRMLGAAEETELINDVDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YTVDETVKVIDGPFSGFSGVIEEVNTEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|51894226|ref|YP_076917.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM
14863]
gi|51857915|dbj|BAD42073.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM
14863]
Length = 176
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K ++ R+ + + + +P E + ++ G++ +R+ FPGY
Sbjct: 6 WYVVHTYSGYENKVKTNLEKRVESMEMQEKIFRVLVPMEDEIEIKDGKQKKVKRKVFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-F 123
VL++ VM+D ++ +++TP V GF+G+G P P+T E+E I+ + +P V F
Sbjct: 66 VLVEMVMSDDSWYVVRNTPGVTGFVGSGNKPIPLTPEEVEAILGR--HGEDKPAHVVVDF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EV + V V GPF G++K + EK + V+V +FGR TPVE+ ++Q+E+I
Sbjct: 124 EVDQPVRVIAGPFKDHTGVIKEIFPEKGKARVQVTMFGRETPVEVDFSQIEEI 176
>gi|295694823|ref|YP_003588061.1| NusG antitermination factor [Bacillus tusciae DSM 2912]
gi|295410425|gb|ADG04917.1| NusG antitermination factor [Bacillus tusciae DSM 2912]
Length = 180
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ R+ ++ + + +P+E + + G+K ++ FPG
Sbjct: 7 RWYVVHTYSGFENKVKTNLEKRVLSMNMEDKIFRVLVPTEEEIETKNGKKRAVMKKVFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD ++ +++TP V GF+G+ G P P+ +E+ I+ Q+ + P
Sbjct: 67 YVLVEMIMTDDSWYVVRNTPGVTGFVGSTGAGSKPIPLHPAEVRAILKQM--GMDEPKER 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V + V V +GPFA F G ++ V EK +V V V +FGR TP+EL ++QVEKI
Sbjct: 125 VDLHVRDAVRVVEGPFADFVGSIEEVYPEKQKVRVLVSMFGRDTPLELEFSQVEKI 180
>gi|270308263|ref|YP_003330321.1| transcription antiterminator [Dehalococcoides sp. VS]
gi|270154155|gb|ACZ61993.1| transcription antiterminator [Dehalococcoides sp. VS]
Length = 177
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E++ + + R+ + + + +P+E V V+ G++ ++ PGY
Sbjct: 8 WYVVHTYSGHEERVRKGLDERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+EA + P V F
Sbjct: 68 VLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQMEA--ESPRVKVGFR 125
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 126 KGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177
>gi|315446044|ref|YP_004078923.1| transcription antitermination protein nusG [Mycobacterium sp.
Spyr1]
gi|315264347|gb|ADU01089.1| transcription antitermination protein nusG [Mycobacterium sp.
Spyr1]
Length = 272
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 83 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEA----------- 112
+L++ + D+ + +++TP V GF+G PSP++ D ++ ++ A
Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202
Query: 113 ------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A +RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262
Query: 167 ELAYNQVEKI 176
EL +NQV KI
Sbjct: 263 ELTFNQVAKI 272
>gi|312880652|ref|ZP_07740452.1| transcription antitermination protein nusG [Aminomonas paucivorans
DSM 12260]
gi|310783943|gb|EFQ24341.1| transcription antitermination protein nusG [Aminomonas paucivorans
DSM 12260]
Length = 181
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 100/174 (57%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+IVQ YS E K ++ R++ G++ V + +P E V V+ G+ R+ FP
Sbjct: 8 RWFIVQTYSGYENKVKANLDQRIATMGMEERVFRVLVPVEERVYVKDGKTKRMRRKVFPS 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ ++ D+ ++ ++ TP V GF+G+G +P P+T+ E+ IM ++ +P + F
Sbjct: 68 YVLVEMILDDQSWYVVRHTPGVTGFVGSGNHPIPLTEKEVAEIMGKIGKDQAKPKMEIAF 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++G+ V V GPF G V + +K +V + +FGR T VE + +EKI+
Sbjct: 128 KIGDTVRVKAGPFEGQVGPVAEIVPDKGKVKFTITVFGRETLVEADHTDLEKIL 181
>gi|148243458|ref|YP_001228615.1| transcription antitermination protein NusG [Synechococcus sp.
RCC307]
gi|147851768|emb|CAK29262.1| Transcription antiterminator protein NusG [Synechococcus sp.
RCC307]
Length = 221
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 38 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKIKKDGSRQSTEEKVFP 97
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVLI+ VM + ++ TP VI F+G E P P++ SE+ I +
Sbjct: 98 GYVLIRMVMDEDTEQAVRSTPNVINFVGHEERRTTGRVRGRIKPRPLSRSEVNRIFKR-- 155
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A ++PV V G+R+ V+ GPF F+G V + ++S++ + IFGR TPVEL ++
Sbjct: 156 AQEKKPVVKVDLAEGDRISVTAGPFKDFSGEVIEISGDRSKLKALLSIFGRETPVELEFS 215
Query: 172 QVEK 175
Q+ K
Sbjct: 216 QISK 219
>gi|145225693|ref|YP_001136371.1| transcription antitermination protein NusG [Mycobacterium gilvum
PYR-GCK]
gi|145218179|gb|ABP47583.1| transcription antitermination protein nusG [Mycobacterium gilvum
PYR-GCK]
Length = 272
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 83 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEA----------- 112
+L++ + D+ + +++TP V GF+G PSP++ D ++ ++ A
Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202
Query: 113 ------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A +RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262
Query: 167 ELAYNQVEKI 176
EL +NQV KI
Sbjct: 263 ELTFNQVAKI 272
>gi|87300788|ref|ZP_01083630.1| transcription antitermination protein NusG [Synechococcus sp. WH
5701]
gi|87284659|gb|EAQ76611.1| transcription antitermination protein NusG [Synechococcus sp. WH
5701]
Length = 226
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 14/187 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M RWY VQV S+CEKK ++ R G+D + EI IP V ++K G + +E +
Sbjct: 40 MVARWYAVQVASSCEKKVKATLEQRAITLGVDSRILEIEIPQTPAVKLKKDGSRQAAEEK 99
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMN 108
FPGYVL++ ++ + ++ TP VI F+G E P P++ E++ I
Sbjct: 100 VFPGYVLVRMMLDEDTMMAVRSTPNVINFVGQEERRSTGRARGHIKPRPLSRQEVDRIFK 159
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ AA ++PV V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 160 R--AAEKKPVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVEL 217
Query: 169 AYNQVEK 175
+ Q+ K
Sbjct: 218 EFAQISK 224
>gi|255527829|ref|ZP_05394678.1| NusG antitermination factor [Clostridium carboxidivorans P7]
gi|296187253|ref|ZP_06855649.1| transcription termination/antitermination factor NusG [Clostridium
carboxidivorans P7]
gi|255508470|gb|EET84861.1| NusG antitermination factor [Clostridium carboxidivorans P7]
gi|296048124|gb|EFG87562.1| transcription termination/antitermination factor NusG [Clostridium
carboxidivorans P7]
Length = 173
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L + ++ +P E V V+ G++ + ++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLYDWIDDVQVPMEEQVEVKDGKRKVTLKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VMTD ++ +++T V GF+G G P +TD E+ V + +V
Sbjct: 66 YVLIHMVMTDDSWYVVRNTRGVTGFVGPGSKPVALTDEEV------VSMGIAEKAVNVDV 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE + V GP +F +++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 120 EVGESIKVKSGPLENFPAVIQEINTEKKKIKALVNMFGRETPVELDFNQIEKL 172
>gi|220930952|ref|YP_002507860.1| NusG antitermination factor [Halothermothrix orenii H 168]
gi|219992262|gb|ACL68865.1| NusG antitermination factor [Halothermothrix orenii H 168]
Length = 176
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ R+ + ++ + I +P+E + +KG++ E+R FPG
Sbjct: 6 KWYVVHTYSGHENKVKANLEKRIKATDMEDKIFRILVPTEEKIESKKGKQKKVEKRIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +MTD ++ +++TP V GF+ +G P P+ E +HI+ + ++ + F
Sbjct: 66 YVLVEMIMTDDSWYVVRNTPGVTGFVSSGTKPLPLQPEEAKHILRGM--GIEDDKIELDF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG++V + DGPF F G +K V ++S+V V V +FGR TP+EL ++Q+EKI
Sbjct: 124 GVGDKVKIVDGPFEEFIGEIKEVHPQQSKVKVLVSMFGRETPLELEFSQIEKI 176
>gi|271962615|ref|YP_003336811.1| transcription antiterminator-like protein [Streptosporangium roseum
DSM 43021]
gi|270505790|gb|ACZ84068.1| Transcription antiterminator-like protein [Streptosporangium roseum
DSM 43021]
Length = 266
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 102/179 (56%), Gaps = 6/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ E + +I R ++ + ++ +P+ V V+ G++ + R PG
Sbjct: 88 EWYVIHSYAGYENRVKSNIETRTQSLNMEDYIFQVEVPTHHVTEVKSGKRQLVKERVLPG 147
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----NQVEAAVQRP- 117
YVL++ +TD+ + +++TP V GF+G PSP++ E+ ++ +V+ + +
Sbjct: 148 YVLVRMDLTDESWSAVRNTPGVTGFVGLSNKPSPLSLDEVAKLLAPEPSEEVKKSTAKAS 207
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++V FE+GE V V DGPFA+ V + E ++ V V IFGR TPVEL++NQV KI
Sbjct: 208 AATVDFEIGESVTVMDGPFATLPATVSEISAESQKLKVLVSIFGRETPVELSFNQVSKI 266
>gi|237751211|ref|ZP_04581691.1| transcription antitermination protein nusG [Helicobacter bilis ATCC
43879]
gi|229372577|gb|EEO22968.1| transcription antitermination protein nusG [Helicobacter bilis ATCC
43879]
Length = 176
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q YS E+ ++I + ++ H + I +P+E V ++ +K +R
Sbjct: 1 MEFQWYAIQTYSGSEQSVKKAIENLIEQNNASHRLKNIVVPTEDVFEIKDKKKKTVQRSI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV + + +++H I+ P+V F+G + P+P+++++I++I++++E P
Sbjct: 61 YPGYVFVYISLDTELWHMIQSLPRVGRFIGESKKPTPLSEADIQNILDKIENR-PAPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F GE V ++DGPFA+F G+V++ D + ++ + V IFGR T E+ QVEKI+
Sbjct: 120 VSFATGESVLITDGPFANFTGVVESYDIKTKKLKLNVSIFGRNTLTEINDVQVEKIL 176
>gi|184154743|ref|YP_001843083.1| transcription antitermination protein [Lactobacillus fermentum IFO
3956]
gi|260663228|ref|ZP_05864120.1| transcription termination/antitermination factor NusG
[Lactobacillus fermentum 28-3-CHN]
gi|183226087|dbj|BAG26603.1| transcription antitermination protein [Lactobacillus fermentum IFO
3956]
gi|260552420|gb|EEX25471.1| transcription termination/antitermination factor NusG
[Lactobacillus fermentum 28-3-CHN]
Length = 181
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E + ++ R G++ + ++ +P E V V+ G+ E + FPG
Sbjct: 7 RWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ I+ ++ V R +
Sbjct: 67 YVLVEMVMTDQAWYVARNTPGVTGFLGSHGGGSKPTPLLPEEVDRILVRMGQDVAR--TD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ + + G FA +G V VD +K ++ VE+ +FGR+T EL +NQ++ +
Sbjct: 125 INVAVGDNIKIIAGAFADLSGKVIEVDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 180
>gi|167753046|ref|ZP_02425173.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216]
gi|167659360|gb|EDS03490.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216]
Length = 186
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ E K E I + S L+ ++++ IP+E+V ++R G+KV+ E+ +PG
Sbjct: 7 QWYVVRTIGGKENKVKEYIESEIRHSHLEEYISQVLIPTEKVYTIRNGKKVSKEKVSYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS------PVTDSEIEHIMNQV-EAAVQR 116
YVLI+A ++ I++ P V+GFLG + S P+ E+ I+ +V E +
Sbjct: 67 YVLIEAAFVGQIPIIIRNIPNVLGFLGDTKEDSRKMIATPLRPQEVSRILGRVDELSSME 126
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F VGE + V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 EENEIPFFVGETIKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVEK 185
>gi|299541913|ref|ZP_07052236.1| transcription antitermination protein NusG [Lysinibacillus
fusiformis ZC1]
gi|298725651|gb|EFI66292.1| transcription antitermination protein NusG [Lysinibacillus
fusiformis ZC1]
Length = 177
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E + ++ R+ G+ + + +P ++ G+K R+
Sbjct: 1 MEKNWYVVHTYSGYENRVKANLEKRVETMGMQDKIFRVIVPEHEETEMKDGKKRTMMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E + ++ Q+ +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQM--GMTDK 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V VGE V V +GPFA F G V+ +D EK ++ V V +FGR T +EL + QV+K+
Sbjct: 119 VVEVDITVGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVTVDMFGRETIMELDFEQVQKL 177
>gi|222529521|ref|YP_002573403.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725]
gi|312622249|ref|YP_004023862.1| nusg antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
gi|222456368|gb|ACM60630.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725]
gi|312202716|gb|ADQ46043.1| NusG antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
Length = 174
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + ++ V VF
Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM------GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GPFA F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKVVSGPFADFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174
>gi|304439415|ref|ZP_07399326.1| transcription termination/antitermination factor NusG
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372111|gb|EFM25706.1| transcription termination/antitermination factor NusG
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 179
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY++ YS E K ++ + ++ ++ +I +P E V + G + ER+ F
Sbjct: 10 TAKWYVIHTYSGHENKVKANMEAMVQNRHMEDVILDIQVPMEEYVEEKDGVAKSKERKLF 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K +M D+ ++ +++T V GF+G G P P++D E+ + +
Sbjct: 70 PSYVLVKMIMNDETWYLVRNTRGVTGFVGPGSKPVPLSDEEVLAL-----GVADKKEFFG 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF F G++ + EK +V V + +FGR T VEL++NQ+ KI
Sbjct: 125 GFEVGESVKVKDGPFEDFVGVIDAMSYEKGKVDVVISMFGRDTKVELSFNQIVKI 179
>gi|73748761|ref|YP_308000.1| transcription antitermination protein NusG [Dehalococcoides sp.
CBDB1]
gi|147669527|ref|YP_001214345.1| transcription antitermination protein nusG [Dehalococcoides sp.
BAV1]
gi|289432786|ref|YP_003462659.1| NusG antitermination factor [Dehalococcoides sp. GT]
gi|73660477|emb|CAI83084.1| transcription antitermination protein NusG [Dehalococcoides sp.
CBDB1]
gi|146270475|gb|ABQ17467.1| transcription antitermination protein nusG [Dehalococcoides sp.
BAV1]
gi|288946506|gb|ADC74203.1| NusG antitermination factor [Dehalococcoides sp. GT]
Length = 177
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E++ + + R+ + + + +P+E V V+ G++ ++ PGY
Sbjct: 8 WYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+EA + P V F
Sbjct: 68 VLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQMEA--ESPRVKVGFR 125
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 126 KGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177
>gi|150392173|ref|YP_001322222.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149952035|gb|ABR50563.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 172
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I G++ L+ E+ +P+E + ++ G+K E + +PG
Sbjct: 6 KWYVVHTYSGHENKVKINIEKMAENRGMEDLILEVAVPTEEKIEIKNGKKKTKEVKLYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +TD+ ++ +++T V GF+G P P+TD E++++ V++ +
Sbjct: 66 YVLLKMHVTDESWYLVRNTRGVTGFVGPSSKPIPLTDREVKNM------GVEQVSHEIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G+ + V GPF SF G +++++ EK + V + +FGR TPVEL ++QV+ +
Sbjct: 120 KIGDSIRVVSGPFESFMGSIEHINMEKQTIRVLISMFGRETPVELEFHQVQAL 172
>gi|317509041|ref|ZP_07966672.1| transcription termination/antitermination factor NusG [Segniliparus
rugosus ATCC BAA-974]
gi|316252696|gb|EFV12135.1| transcription termination/antitermination factor NusG [Segniliparus
rugosus ATCC BAA-974]
Length = 263
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 109/190 (57%), Gaps = 18/190 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ R+ + + +I +P+E V V+ G++ R+ PG
Sbjct: 75 KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 134
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVE----------- 111
Y+L++ + D+ + T+++TP V GF+GT P+P+T D ++ ++ + E
Sbjct: 135 YILVRMDLNDESWSTVRNTPGVTGFVGTS-RPTPLTLDDVVKFLLPRQEPKKTAPAAKAK 193
Query: 112 -----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
AA PV+ V ++VGE V V+DGPFA+ + ++ E+ ++ V V IFGR TPV
Sbjct: 194 QGDGFAAAIAPVALVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPV 253
Query: 167 ELAYNQVEKI 176
EL++NQV KI
Sbjct: 254 ELSFNQVTKI 263
>gi|119511572|ref|ZP_01630680.1| transcription antitermination protein NusG [Nodularia spumigena
CCY9414]
gi|119463807|gb|EAW44736.1| transcription antitermination protein NusG [Nodularia spumigena
CCY9414]
Length = 203
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E + FP
Sbjct: 20 RWYAVQVASGCEKRVKTNLEQRIQTFDVSDKIVQVEIPHTPAVKIRKDGSRQHTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ VM D + +++T VI F+G + P P+ SE+E I Q
Sbjct: 80 GYVLVRMVMEDDTWQVVRNTSHVINFVGAEQKRGGSKSRGHVKPVPLGASEVERIFKQT- 138
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ Q P+ + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 139 -SEQEPIVKIDMAAGDKIVVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 197
Query: 172 QVEK 175
QVEK
Sbjct: 198 QVEK 201
>gi|256380624|ref|YP_003104284.1| NusG antitermination factor [Actinosynnema mirum DSM 43827]
gi|255924927|gb|ACU40438.1| NusG antitermination factor [Actinosynnema mirum DSM 43827]
Length = 266
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 104/183 (56%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 84 WYVVHSYAGYENKVKTNLETRIQTLDMEDYIFQVEVPTEEVTEIKNGQRKQVQRKVLPGY 143
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----NQVEAAVQR---- 116
+L++ + D + +++TP V GF+G PSP+T E+ + Q AA ++
Sbjct: 144 ILVRMELNDGSWSAVRNTPGVTGFVGATSKPSPLTVDEVLKFLLPQGKQEPAAGKKAATT 203
Query: 117 PVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
PV S V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+++QV
Sbjct: 204 PVKSTVEVDFEVGESVTVMDGPFATLPATISEVNADGQKLKVLVSIFGRETPVELSFSQV 263
Query: 174 EKI 176
KI
Sbjct: 264 SKI 266
>gi|296138474|ref|YP_003645717.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162]
gi|296026608|gb|ADG77378.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162]
Length = 276
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 82 WYVIHTYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQQKRVNRKVLPGY 141
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
+L++ + D+ + +++TP V GF+G PSP+T +E+ + A
Sbjct: 142 ILVRMDLNDESWGAVRNTPGVTGFVGLTSKPSPLTMNEVVKFLLPESARTKPAKDKGAAA 201
Query: 115 ------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
Q P V FEVGE V V DGPFA+ + ++ E+ ++ V V IFGR
Sbjct: 202 DGAAAASGGAVSQGPAVEVDFEVGESVTVMDGPFATLPASISEINAEQRKLKVLVSIFGR 261
Query: 163 VTPVELAYNQVEKIV 177
TPVELA+NQVEKI+
Sbjct: 262 ETPVELAFNQVEKII 276
>gi|296274146|ref|YP_003656777.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299]
gi|296098320|gb|ADG94270.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299]
Length = 175
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 104/178 (58%), Gaps = 4/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q +S E ++ RL+ D + ++ +P+E ++ V+KG K ER
Sbjct: 1 MAHLWYAIQTHSGSELTVKRALV-RLADEMADGKIADVLVPTEDLIEVKKGNKTIVERPL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
+P Y K + ++H I+ PKV F+G + P+P+++ +I I+++V A +P
Sbjct: 60 YPAYAFAKIDLDTALWHRIQSMPKVGRFIGESKKPTPLSEKDINSILDKVNNRAAAKP-- 117
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F+ GE V +++GPFA+FNGIV+ D + + V IFGR TPVE++Y QVE++V
Sbjct: 118 KVSFDDGEMVRINEGPFANFNGIVEEFDIASGILKLNVSIFGRNTPVEISYTQVERVV 175
>gi|32265865|ref|NP_859897.1| transcription antitermination protein NusG [Helicobacter hepaticus
ATCC 51449]
gi|32261914|gb|AAP76963.1| transcription termination factor NusG [Helicobacter hepaticus ATCC
51449]
Length = 171
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +Q YS EK E+I + ++ + ++ +P+E ++ +K K+ +R +PGY
Sbjct: 3 WYAIQTYSGSEKVVGEAIRNLIVQNQMQDRFGDVVVPTESIIETKK--KI-VDRSLYPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V I+ + K++H I+ PKV F+G + P+P+++++I I+ +V P + FE
Sbjct: 60 VFIQVDLDTKLWHMIQSLPKVGRFIGESKKPTPLSEADIAKILEKVRNP-SAPKPKISFE 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GE V + DGPF +F G V+ D E ++ + V IFGR TPVE+ Y+QVEKI+
Sbjct: 119 QGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRSTPVEILYSQVEKII 171
>gi|111220530|ref|YP_711324.1| transcription antitermination protein nusG [Frankia alni ACN14a]
gi|111148062|emb|CAJ59729.1| Transcription antitermination protein nusG [Frankia alni ACN14a]
Length = 291
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY
Sbjct: 118 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-- 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ A ++ V +V
Sbjct: 178 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPA-APKEKKVETVRVQ 236
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 237 EFEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 291
>gi|15923525|ref|NP_371059.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926213|ref|NP_373746.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus N315]
gi|21282220|ref|NP_645308.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49482766|ref|YP_039990.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49485401|ref|YP_042622.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651412|ref|YP_185468.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus COL]
gi|82750244|ref|YP_415985.1| transcription antitermination protein [Staphylococcus aureus RF122]
gi|87160422|ref|YP_493224.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194298|ref|YP_499090.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148266996|ref|YP_001245939.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus JH9]
gi|150393043|ref|YP_001315718.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus JH1]
gi|151220710|ref|YP_001331532.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156978864|ref|YP_001441123.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|161508776|ref|YP_001574435.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141027|ref|ZP_03565520.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315646|ref|ZP_04838859.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731141|ref|ZP_04865306.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253732544|ref|ZP_04866709.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus TCH130]
gi|255005330|ref|ZP_05143931.2| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257424650|ref|ZP_05601077.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427318|ref|ZP_05603717.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257429954|ref|ZP_05606338.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 68-397]
gi|257432656|ref|ZP_05609016.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus E1410]
gi|257435560|ref|ZP_05611608.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M876]
gi|257795365|ref|ZP_05644344.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9781]
gi|258408948|ref|ZP_05681229.1| transcription termination-antitermination factor NusG
[Staphylococcus aureus A9763]
gi|258420414|ref|ZP_05683357.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9719]
gi|258422617|ref|ZP_05685523.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9635]
gi|258439335|ref|ZP_05690267.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9299]
gi|258444075|ref|ZP_05692412.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8115]
gi|258446343|ref|ZP_05694501.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A6300]
gi|258448436|ref|ZP_05696551.1| transcription antitermination protein nusG [Staphylococcus aureus
A6224]
gi|258452731|ref|ZP_05700729.1| transcription antitermination protein nusG [Staphylococcus aureus
A5948]
gi|258453792|ref|ZP_05701766.1| transcription antitermination protein nusG [Staphylococcus aureus
A5937]
gi|262049578|ref|ZP_06022447.1| transcription antitermination protein [Staphylococcus aureus D30]
gi|262052423|ref|ZP_06024623.1| transcription antitermination protein [Staphylococcus aureus
930918-3]
gi|269202159|ref|YP_003281428.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus ED98]
gi|282894971|ref|ZP_06303194.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8117]
gi|282903124|ref|ZP_06311015.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C160]
gi|282904914|ref|ZP_06312772.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282907864|ref|ZP_06315699.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910177|ref|ZP_06317981.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282913369|ref|ZP_06321158.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M899]
gi|282915859|ref|ZP_06323624.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus D139]
gi|282918324|ref|ZP_06326061.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C427]
gi|282923286|ref|ZP_06330966.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C101]
gi|282924450|ref|ZP_06332122.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9765]
gi|282928873|ref|ZP_06336464.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A10102]
gi|283769692|ref|ZP_06342584.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus H19]
gi|283957334|ref|ZP_06374787.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus A017934/97]
gi|284023546|ref|ZP_06377944.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus 132]
gi|293500415|ref|ZP_06666266.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 58-424]
gi|293509360|ref|ZP_06668071.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M809]
gi|293523947|ref|ZP_06670634.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M1015]
gi|294850312|ref|ZP_06791046.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9754]
gi|295406913|ref|ZP_06816716.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8819]
gi|295427074|ref|ZP_06819710.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|296275782|ref|ZP_06858289.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MR1]
gi|297208750|ref|ZP_06925178.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297246263|ref|ZP_06930112.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8796]
gi|297590573|ref|ZP_06949212.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MN8]
gi|300912840|ref|ZP_07130282.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus TCH70]
gi|304381865|ref|ZP_07364512.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|60390427|sp|Q6GBV1|NUSG_STAAS RecName: Full=Transcription antitermination protein nusG
gi|60390441|sp|Q6GJD2|NUSG_STAAR RecName: Full=Transcription antitermination protein nusG
gi|60392842|sp|P0A095|NUSG_STAAM RecName: Full=Transcription antitermination protein nusG
gi|60392843|sp|P0A096|NUSG_STAAN RecName: Full=Transcription antitermination protein nusG
gi|60392844|sp|P0A097|NUSG_STAAW RecName: Full=Transcription antitermination protein nusG
gi|81695157|sp|Q5HID9|NUSG_STAAC RecName: Full=Transcription antitermination protein nusG
gi|110815889|sp|Q2G0P2|NUSG_STAA8 RecName: Full=Transcription antitermination protein nusG
gi|110815890|sp|P0C1S3|NUSG_STAAE RecName: Full=Transcription antitermination protein nusG
gi|13183703|gb|AAK15310.1|AF327733_7 NusG [Staphylococcus aureus subsp. aureus str. Newman]
gi|2078377|gb|AAB54018.1| NusG [Staphylococcus aureus]
gi|13700426|dbj|BAB41724.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus N315]
gi|14246303|dbj|BAB56697.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203656|dbj|BAB94356.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49240895|emb|CAG39562.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49243844|emb|CAG42269.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285598|gb|AAW37692.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus COL]
gi|82655775|emb|CAI80175.1| transcription antitermination protein [Staphylococcus aureus RF122]
gi|87126396|gb|ABD20910.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87201856|gb|ABD29666.1| transcription antitermination protein, putative [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|147740065|gb|ABQ48363.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus JH9]
gi|149945495|gb|ABR51431.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus JH1]
gi|150373510|dbj|BAF66770.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156720999|dbj|BAF77416.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|160367585|gb|ABX28556.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253725106|gb|EES93835.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253729473|gb|EES98202.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus TCH130]
gi|257272220|gb|EEV04343.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275511|gb|EEV06984.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257279151|gb|EEV09752.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 68-397]
gi|257282071|gb|EEV12206.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus E1410]
gi|257284751|gb|EEV14870.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M876]
gi|257789337|gb|EEV27677.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9781]
gi|257840299|gb|EEV64762.1| transcription termination-antitermination factor NusG
[Staphylococcus aureus A9763]
gi|257843604|gb|EEV68010.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9719]
gi|257847189|gb|EEV71197.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9635]
gi|257847672|gb|EEV71671.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9299]
gi|257850745|gb|EEV74690.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8115]
gi|257854937|gb|EEV77882.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A6300]
gi|257858305|gb|EEV81192.1| transcription antitermination protein nusG [Staphylococcus aureus
A6224]
gi|257859604|gb|EEV82454.1| transcription antitermination protein nusG [Staphylococcus aureus
A5948]
gi|257864048|gb|EEV86802.1| transcription antitermination protein nusG [Staphylococcus aureus
A5937]
gi|259159669|gb|EEW44713.1| transcription antitermination protein [Staphylococcus aureus
930918-3]
gi|259162318|gb|EEW46891.1| transcription antitermination protein [Staphylococcus aureus D30]
gi|262074449|gb|ACY10422.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269940109|emb|CBI48485.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282314154|gb|EFB44544.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C101]
gi|282317458|gb|EFB47830.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C427]
gi|282320155|gb|EFB50500.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus D139]
gi|282322401|gb|EFB52723.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M899]
gi|282325569|gb|EFB55877.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282328248|gb|EFB58526.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331739|gb|EFB61250.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282589481|gb|EFB94570.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A10102]
gi|282592861|gb|EFB97865.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9765]
gi|282596079|gb|EFC01040.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C160]
gi|282762653|gb|EFC02790.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8117]
gi|283459839|gb|EFC06929.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus H19]
gi|283469828|emb|CAQ49039.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ST398]
gi|283790785|gb|EFC29600.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus A017934/97]
gi|285816236|gb|ADC36723.1| Transcription antitermination protein NusG [Staphylococcus aureus
04-02981]
gi|290920910|gb|EFD97971.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M1015]
gi|291095420|gb|EFE25681.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 58-424]
gi|291467457|gb|EFF09972.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M809]
gi|294822824|gb|EFG39259.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9754]
gi|294968144|gb|EFG44170.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8819]
gi|295128862|gb|EFG58492.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|296886695|gb|EFH25600.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297176861|gb|EFH36119.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8796]
gi|297576872|gb|EFH95587.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MN8]
gi|298693867|gb|ADI97089.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus ED133]
gi|300885944|gb|EFK81147.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus TCH70]
gi|302332249|gb|ADL22442.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302750427|gb|ADL64604.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304339651|gb|EFM05598.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312439044|gb|ADQ78115.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus TCH60]
gi|312829032|emb|CBX33874.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128829|gb|EFT84828.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus CGS03]
gi|315193900|gb|EFU24294.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus CGS00]
gi|315196652|gb|EFU26999.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141599|gb|EFW33438.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320141772|gb|EFW33600.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MRSA177]
gi|323439806|gb|EGA97523.1| transcription antitermination protein [Staphylococcus aureus O11]
gi|323443092|gb|EGB00712.1| transcription antitermination protein [Staphylococcus aureus O46]
gi|329313256|gb|AEB87669.1| Transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus T0131]
gi|329727905|gb|EGG64354.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 21172]
gi|329731015|gb|EGG67388.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 21189]
gi|329731956|gb|EGG68312.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 21193]
Length = 182
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ + ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTTVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V EVGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|291280160|ref|YP_003496995.1| transcriptional antitermination factor NusG [Deferribacter
desulfuricans SSM1]
gi|290754862|dbj|BAI81239.1| transcriptional antitermination factor NusG [Deferribacter
desulfuricans SSM1]
Length = 174
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EK+ + + ++ G++ + E+ IP+E VV ++KG+K S++R
Sbjct: 1 MAKQWYVVHTYSGFEKRVKQLLEEKVKNLGIEDEIDEVLIPTEDVVELKKGKKKISKKRT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ M K +H +K PKV GF+G G NP P+ + +++ ++ V+ R S
Sbjct: 61 FPGYILVHMEMNTKNWHIVKSIPKVTGFVG-GINPVPIPEQDVKAMLELVKEQAPRLASK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G++V V DGPF F G ++ V+ +K +V V V IFGR TP+EL + QV++I
Sbjct: 120 --FIKGDKVEVIDGPFQGFTGEIEEVNPDKEKVKVIVSIFGRQTPIELDFLQVKRI 173
>gi|284034041|ref|YP_003383972.1| NusG antitermination factor [Kribbella flavida DSM 17836]
gi|283813334|gb|ADB35173.1| NusG antitermination factor [Kribbella flavida DSM 17836]
Length = 400
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 104/189 (55%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E + ++ R++ ++ + EI +P+E V ++ G++ +R PGY
Sbjct: 212 WYVVHTYSGMENRVKGNLENRINSLNMEDYIFEIVVPTEEVAEIKNGQRRMVKRTVLPGY 271
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
VL++ +TD+ + T++ TP V GF+G + P P++ E+E ++
Sbjct: 272 VLVRMDLTDESWSTVRHTPSVTGFVGNSQKPVPLSLEEVEKMLAPAVVAAAEAAAAETGA 331
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ A ++ V F VG+ V V DGPFA+ + + ++ + R+ V IFGR TPVE
Sbjct: 332 APTKTAAKKKVEVADFGVGDSVMVVDGPFATLHATITEINADAQRIKALVEIFGRETPVE 391
Query: 168 LAYNQVEKI 176
L+++Q++K+
Sbjct: 392 LSFSQIQKV 400
>gi|54027090|ref|YP_121332.1| transcription antitermination protein NusG [Nocardia farcinica IFM
10152]
gi|54018598|dbj|BAD59968.1| putative transcription antitermination regulator [Nocardia
farcinica IFM 10152]
Length = 273
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ L+ + ++ +P+E V ++ G++ N R+ PGY
Sbjct: 84 WYVIHSYAGYENKVKANLETRVQNLDLEDYIFQVEVPTEEVTEIKNGQRKNVNRKVLPGY 143
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
+L++ + D+ + +++TP V GF+G PSP++ ++ + V A+ Q
Sbjct: 144 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSIDDVVKFL--VPASQQKKAPAAAAA 201
Query: 116 -----------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+P V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR T
Sbjct: 202 ASTETSTDVAPKPAIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRET 261
Query: 165 PVELAYNQVEKI 176
PVELA+ QV KI
Sbjct: 262 PVELAFTQVAKI 273
>gi|189485233|ref|YP_001956174.1| transcription antitermination factor NusG [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|170287192|dbj|BAG13713.1| transcription antitermination factor NusG [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 176
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 108/177 (61%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V VYS E K + + ++ + +++I +P+E V+ V++ +K +R+F
Sbjct: 1 MANQWYVVHVYSGHEYKVKKGLEMTVANLNMQDTISQILVPTEEVIEVKQNKKKIKKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVS 119
+PGY+ ++ + + Y I++T V GFLG G P P++ E+E+I+N V +P
Sbjct: 61 YPGYIFVEMTINNSTYWLIRNTAGVTGFLG-GVKPIPISQFEVENILNTVANPDTSKPRP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V FE E + + +GPF F GIV+ V+ E+ ++ V V IFGR TPVEL + QVEK+
Sbjct: 120 AVSFEKEENIRIIEGPFKHFIGIVEEVNHERGKLRVMVTIFGRHTPVELGFLQVEKM 176
>gi|288926253|ref|ZP_06420178.1| transcription termination/antitermination factor NusG [Prevotella
buccae D17]
gi|315606519|ref|ZP_07881534.1| transcription termination/antitermination factor NusG [Prevotella
buccae ATCC 33574]
gi|288336944|gb|EFC75305.1| transcription termination/antitermination factor NusG [Prevotella
buccae D17]
gi|315251925|gb|EFU31899.1| transcription termination/antitermination factor NusG [Prevotella
buccae ATCC 33574]
Length = 182
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGL--DHLVTEITIPSERVVSVRKGRKVNSERR 59
T +WY+++ S E K E I + + L H V++I IP E+ S+R G++V E+
Sbjct: 5 TNQWYVLKAVSGKEAKVKEYIEAEMKHNELLASH-VSQILIPMEKHASLRNGKRVIKEKV 63
Query: 60 FFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGY+ ++A + + ++ P V+GFLG +NPSPV SEI ++ E
Sbjct: 64 SLPGYLFVEANLKGGDIASMLRFVPNVLGFLGGLDNPSPVPQSEINRMLGTAEDTELEEN 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL Y QVEK
Sbjct: 124 LDIPFVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELGYMQVEK 180
>gi|328958748|ref|YP_004376134.1| transcription antitermination protein NusG [Carnobacterium sp.
17-4]
gi|328675072|gb|AEB31118.1| transcription antitermination protein NusG [Carnobacterium sp.
17-4]
Length = 182
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++I R + G+ + + IP E V+ G++ + ++ FPG
Sbjct: 9 QWYVLHTYSGYENKVKQNIESRANSMGMGDYIFRVVIPEEEEKEVKNGKEKINMKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +M+D ++ +++TP V GF+G+ G P+P+ +SEIE I+ ++ + +
Sbjct: 69 YVLVEMIMSDDSWYVVRNTPGVTGFVGSHGAGSKPAPLLNSEIEVILRRIGMSARH--QE 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V + +G F+ G + ++ EK+++ V V +FGR T EL + Q +K+
Sbjct: 127 INFEVGETVTIIEGAFSGLTGKITEIEMEKAKLKVNVEMFGRETSTELDFEQADKL 182
>gi|317968194|ref|ZP_07969584.1| transcription antitermination protein NusG [Synechococcus sp.
CB0205]
Length = 222
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+ RWY VQV S+CEKK ++ R G+D + EI IP V ++K G + ++E +
Sbjct: 36 LIARWYAVQVASSCEKKVKATLEQRAVTLGVDKRILEIEIPQTPAVKLKKDGSRTSTEEK 95
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMN 108
FPGYVL++ V+ + ++ TP VI F+G TG+ P P++ E++ I
Sbjct: 96 VFPGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKVRGHIKPRPLSRQEVDRIFK 155
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ AA ++PV V G+++ V+ GPF F G V V +++++ + IFGR TPVEL
Sbjct: 156 R--AAEKKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGDRNKLKALLSIFGRETPVEL 213
Query: 169 AYNQVEK 175
++Q+ K
Sbjct: 214 EFSQISK 220
>gi|228470334|ref|ZP_04055238.1| transcription termination/antitermination factor NusG
[Porphyromonas uenonis 60-3]
gi|228308077|gb|EEK16952.1| transcription termination/antitermination factor NusG
[Porphyromonas uenonis 60-3]
Length = 180
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 6/178 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R+Y+++V S EKK E I S L V + +P+E+VVS R G+KV ER + PG
Sbjct: 2 RFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT----GE-NPSPVTDSEIEHIMNQVEAAVQRPV 118
YVL++A + HT+ P VIGFL + G+ P P+ E++ ++ Q + +
Sbjct: 62 YVLVEAALVGDTEHTLCTIPNVIGFLTSRMSDGQLAPEPLRTQEVQDLLGQADRDAEGAG 121
Query: 119 S-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V + DGPF+ F+ + V +K ++ V V IFGR TP+EL Y QVEK
Sbjct: 122 RFDIEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179
>gi|226361072|ref|YP_002778850.1| transcription antitermination protein NusG [Rhodococcus opacus B4]
gi|226239557|dbj|BAH49905.1| transcription antitermination protein NusG [Rhodococcus opacus B4]
Length = 288
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 99 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 158
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE-IEHIMNQVEAAVQ-------- 115
+L++ + D+ + +++TP V GF+G PSP+T +E I+ ++ Q E Q
Sbjct: 159 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 218
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 219 GETGGETFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 278
Query: 167 ELAYNQVEKI 176
EL++ QV KI
Sbjct: 279 ELSFTQVAKI 288
>gi|284992892|ref|YP_003411446.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160]
gi|284066137|gb|ADB77075.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160]
Length = 272
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ ++ + +I +P+E V ++ G++ R+ PGY
Sbjct: 88 WYVIHSYAGYENKVKTNLESRIQSLDMEDYIFQIEVPTEEVTEIKNGKRTQVNRKKLPGY 147
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
+L++ + D+ + +++TP V GF+G PSP++ E+ ++ AA + +
Sbjct: 148 LLVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLSIDEVVSLL--APAATPQAARTTETT 205
Query: 121 -----------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V FEVGE V V DGPFA+ + ++ E+ ++ V V IFGR TPVEL+
Sbjct: 206 STTTAAAPTTVVDFEVGESVTVMDGPFATLPATINEINAEQQKLQVLVSIFGRETPVELS 265
Query: 170 YNQVEKI 176
+NQV+KI
Sbjct: 266 FNQVQKI 272
>gi|158317804|ref|YP_001510312.1| NusG antitermination factor [Frankia sp. EAN1pec]
gi|158113209|gb|ABW15406.1| NusG antitermination factor [Frankia sp. EAN1pec]
Length = 273
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY
Sbjct: 100 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-- 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ A ++ V +V
Sbjct: 160 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVSILAPA-APKEKKVETVKAQ 218
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 219 EFEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 273
>gi|221194673|ref|ZP_03567730.1| transcription termination/antitermination factor NusG [Atopobium
rimae ATCC 49626]
gi|221185577|gb|EEE17967.1| transcription termination/antitermination factor NusG [Atopobium
rimae ATCC 49626]
Length = 184
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 9/181 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRK---VNS 56
M RWY++ YS E K + + R+ GL V ++ P E V V+K G K
Sbjct: 1 MAKRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTK 60
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----NQVEA 112
E +F+PGYVL++ + D + +++TP V GFLG PSP+ E +M + +A
Sbjct: 61 EVKFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDGKPSPLRREEFNKMMRRSGGKADA 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ V++ EVG+ V V GP A F+GIV V+ E ++ V + IFGR TPVEL +Q
Sbjct: 121 TTLKRVTT-DVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQ 179
Query: 173 V 173
+
Sbjct: 180 I 180
>gi|269798566|ref|YP_003312466.1| NusG antitermination factor [Veillonella parvula DSM 2008]
gi|282849078|ref|ZP_06258466.1| transcription termination/antitermination factor NusG [Veillonella
parvula ATCC 17745]
gi|269095195|gb|ACZ25186.1| NusG antitermination factor [Veillonella parvula DSM 2008]
gi|282581196|gb|EFB86591.1| transcription termination/antitermination factor NusG [Veillonella
parvula ATCC 17745]
Length = 178
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 66 YVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVDV 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VEL ++QVEK
Sbjct: 125 EVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEK 176
>gi|118616514|ref|YP_904846.1| transcription antitermination protein NusG [Mycobacterium ulcerans
Agy99]
gi|118568624|gb|ABL03375.1| transcription antitermination protein, NusG [Mycobacterium ulcerans
Agy99]
Length = 237
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ +TD + +++TP V GF+G PS +T D ++ ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168
Query: 110 --VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228
Query: 168 LAYNQVEKI 176
L +NQV KI
Sbjct: 229 LTFNQVSKI 237
>gi|183980992|ref|YP_001849283.1| transcription antitermination protein, NusG [Mycobacterium marinum
M]
gi|183174318|gb|ACC39428.1| transcription antitermination protein, NusG [Mycobacterium marinum
M]
Length = 237
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ +TD + +++TP V GF+G PS +T D ++ ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168
Query: 110 --VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228
Query: 168 LAYNQVEKI 176
L +NQV KI
Sbjct: 229 LTFNQVSKI 237
>gi|149177085|ref|ZP_01855693.1| transcription antiterminator NusG [Planctomyces maris DSM 8797]
gi|148844150|gb|EDL58505.1| transcription antiterminator NusG [Planctomyces maris DSM 8797]
Length = 194
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++V SN EK +++ + R GL+ EI IP+E+VV + G+K ER+ +PGY
Sbjct: 22 WYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERKLYPGY 81
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFF 123
++I+ + D ++ ++ T V F G P P+ + EI ++ + E+ + PV + F
Sbjct: 82 LMIQVELNDDSWYLVRSTNGVGDFTGAAGKPIPMQEHEIARMLGREESKEETPVKIKLDF 141
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V D F F G + VDE +V V + IF R TP EL Y Q+EK+
Sbjct: 142 QVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194
>gi|86739281|ref|YP_479681.1| transcription antitermination protein nusG [Frankia sp. CcI3]
gi|86566143|gb|ABD09952.1| transcription antitermination protein nusG [Frankia sp. CcI3]
Length = 277
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY
Sbjct: 104 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 163
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-- 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ V ++ V +V
Sbjct: 164 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPV-VPKEKKVETVRVQ 222
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 223 EFEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 277
>gi|186685895|ref|YP_001869091.1| transcription antitermination protein NusG [Nostoc punctiforme PCC
73102]
gi|186468347|gb|ACC84148.1| NusG antitermination factor [Nostoc punctiforme PCC 73102]
Length = 213
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E + FP
Sbjct: 30 RWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPQTPAVKIRKDGSRQHTEEKVFP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ +M D + +++T VI F+G+ + +P P++ SE+E I Q
Sbjct: 90 GYVLVRMMMDDDTWQVVRNTSHVINFVGSEQKRGSSKGRGHVHPIPLSSSEVERIFKQT- 148
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ Q V + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 149 -SEQEAVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 207
Query: 172 QVEK 175
QVEK
Sbjct: 208 QVEK 211
>gi|24216124|ref|NP_713605.1| transcription antiterminator [Leptospira interrogans serovar Lai
str. 56601]
gi|45656642|ref|YP_000728.1| transcription antitermination protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|24197367|gb|AAN50623.1| transcription antiterminator [Leptospira interrogans serovar Lai
str. 56601]
gi|45599878|gb|AAS69365.1| transcription antitermination protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 181
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q YS E K ++I + + L+ + ++ IP+ V ++ G+K ++R+
Sbjct: 3 TKKWYALQTYSGHENKVQKNIEKLIQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQV-EAAVQRPVS 119
PGYVLI+ M D I+ P V F+G+ + P P++ E++++ ++ + A + PV+
Sbjct: 63 PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F+VG+ + + DGPFA+F G+V + +K R+ V+V IFGR TPVEL Y QV+
Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178
>gi|153952848|ref|YP_001393613.1| transcription antitermination protein NusG [Clostridium kluyveri
DSM 555]
gi|219853513|ref|YP_002470635.1| hypothetical protein CKR_0170 [Clostridium kluyveri NBRC 12016]
gi|146345729|gb|EDK32265.1| NusG [Clostridium kluyveri DSM 555]
gi|219567237|dbj|BAH05221.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 173
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L + ++ +P E V ++ G+K + ++ FPG
Sbjct: 6 KWYVVHTYSGYENKVKMNLEKTIENRELYDCIDDVQVPMEEQVEIKDGKKKITLKKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ +MTD ++ +++T V GF+G G P P+TD E++ + + + +V
Sbjct: 66 YVLVHMIMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDEEVK------DMGINEKLVNVDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +F +++ ++ EK +V V +FGR TPVEL +NQ+EKI
Sbjct: 120 LVGENVKVRSGPLENFLAVIQEINIEKRKVKALVNMFGRETPVELDFNQIEKI 172
>gi|313673493|ref|YP_004051604.1| transcription antitermination protein nusg [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940249|gb|ADR19441.1| transcription antitermination protein nusG [Calditerrivibrio
nitroreducens DSM 19672]
Length = 175
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EK+ + + ++ L EI IP+E VV + KG K S++ FPG
Sbjct: 5 QWYVVHTYSGFEKRVKKLLEEKIKNENLYDSFGEILIPTENVVELVKGTKKISKKSTFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+ VM + +H +K PKV GF+G G NP P+ + +++ +++ A + P ++ +
Sbjct: 65 YILVNMVMNTENWHKVKSIPKVTGFVG-GVNPVPIPEQDVKAMIDL--AKSEAPRIAMKY 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPF F G+V V+ EK +V V V IFGR TP++L + Q++++
Sbjct: 122 IKGDVVEVVDGPFQGFTGVVDEVNTEKEKVKVIVSIFGRQTPIDLDFLQIKRV 174
>gi|169333758|ref|ZP_02860951.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM
17244]
gi|169259607|gb|EDS73573.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM
17244]
Length = 185
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ YS E K E+I + R + ++ E+ +P +V + G + E++ FPGY
Sbjct: 19 WYVAHTYSGYENKVKENIEAAVIRRNMSDIIEEVVVPMHKVEETKNGERKVVEKKVFPGY 78
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K MTD ++ +++T V GF+G P P+T+ E+ ++ +++ + +
Sbjct: 79 VLVKMYMTDDAWYIVRNTRGVTGFVGPASKPVPLTEEELRNL-----GIIEKETITTDLK 133
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ + V GPF S+ G+++ ++ +K+++ V + +FGR TPVEL + QV K
Sbjct: 134 VGDEIEVLSGPFESYTGVIEEINIDKAKLKVNISMFGRETPVELDFTQVSK 184
>gi|294496969|ref|YP_003560669.1| transcription termination/antitermination factor NusG [Bacillus
megaterium QM B1551]
gi|294346906|gb|ADE67235.1| transcription termination/antitermination factor NusG [Bacillus
megaterium QM B1551]
Length = 177
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ ++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKITKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G P+ + E+E I+ Q+ +
Sbjct: 61 FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQM--GMDEK 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI
Sbjct: 119 HADFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177
>gi|222823474|ref|YP_002575048.1| transcription antitermination protein NusG [Campylobacter lari
RM2100]
gi|222538696|gb|ACM63797.1| transcription antitermination protein NusG [Campylobacter lari
RM2100]
Length = 176
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + G+ + E+ +P+E V+ + G++ SER
Sbjct: 1 MNHKWYAIQTYAGSEMAVKRAIENLVRDHGIQEQLLEVIVPTEDVIEFKNGKEKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV ++ +++H I+ PKV F+G + P+P+++ +I I+ +V+ P
Sbjct: 61 YSGYVFANIDLSTELWHKIQSLPKVGRFIGESKKPTPLSEKDINLILEKVKNKAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ F+ E V +++GPFA+F GIV+ D + + + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 ISFDKEESVRITEGPFANFVGIVEEYDMVRGVLKLNVSIFGRSTPVEILYSQVEKIV 176
>gi|254431017|ref|ZP_05044720.1| transcription termination/antitermination factor NusG [Cyanobium
sp. PCC 7001]
gi|197625470|gb|EDY38029.1| transcription termination/antitermination factor NusG [Cyanobium
sp. PCC 7001]
Length = 231
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+D+ + EI IP V ++K G + ++E + FP
Sbjct: 48 RWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPGVKLKKDGSRQSTEEKVFP 107
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G E P P++ E++ I +
Sbjct: 108 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEERRATARARGHIKPRPLSRQEVDRIFKR-- 165
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++PV V G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 166 AAEKKPVVKVDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFA 225
Query: 172 QVEK 175
Q+ K
Sbjct: 226 QISK 229
>gi|258651255|ref|YP_003200411.1| NusG antitermination factor [Nakamurella multipartita DSM 44233]
gi|258554480|gb|ACV77422.1| NusG antitermination factor [Nakamurella multipartita DSM 44233]
Length = 306
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V Y+ E K ++ R+ ++ + +I +P+E V ++ G++ +R+ +PG
Sbjct: 123 EWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPG 182
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS--- 119
Y+L++ +TD+ + +++TP V GF+G T + PS +T E+ I+ A ++P S
Sbjct: 183 YILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPT--APRKPASVAT 240
Query: 120 ---------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
V F +GE V V DGPFA+ + V+ + ++ V V IFGR TPVEL++
Sbjct: 241 TPGSAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSF 300
Query: 171 NQVEKI 176
+QV KI
Sbjct: 301 SQVAKI 306
>gi|295702336|ref|YP_003595411.1| transcription termination/antitermination factor NusG [Bacillus
megaterium DSM 319]
gi|294799995|gb|ADF37061.1| transcription termination/antitermination factor NusG [Bacillus
megaterium DSM 319]
Length = 177
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ ++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKVTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G P+ + E+E I+ Q+ +
Sbjct: 61 FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQM--GMDEK 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI
Sbjct: 119 HADFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177
>gi|288917215|ref|ZP_06411584.1| NusG antitermination factor [Frankia sp. EUN1f]
gi|288351406|gb|EFC85614.1| NusG antitermination factor [Frankia sp. EUN1f]
Length = 266
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ ++ +PGY
Sbjct: 93 WYVVHSYAGYENKVKANLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVLQKKYPGY 152
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-- 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ V A ++ V +V
Sbjct: 153 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVAILAPV-APKEKKVETVKAQ 211
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 212 EFEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 266
>gi|282889737|ref|ZP_06298276.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500311|gb|EFB42591.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 182
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQ S+ EKKA +++ G+ L+ + +P E+V V+ G + E+R +PG
Sbjct: 3 KWYVVQAISSQEKKAKKNLEEHREHKGMSELIERVVLPIEKVSEVKNGLQKVVEKRLWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+T V+ FLG G+ P+ +T+ E++ I+ +E Q F
Sbjct: 63 YLLIKMTLTDESWSYVKNTIGVVDFLG-GDQPAALTEKEVDEILKDLEDKKQTVTQRHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
VG+RV + DG F +F G V V +K R+ V V IFGR T V +L + QVE+I
Sbjct: 122 NVGDRVKIVDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 175
>gi|121534746|ref|ZP_01666567.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1]
gi|121306766|gb|EAX47687.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1]
Length = 176
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ ++ G+++ + + +P E V ++ G+K ++R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVKANLEKKVRSMGMENEIFRVLVPMEDEVEIKDGKKKVAKRKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ ++ D+ ++ +++TP V GF+G+G P P++D+E+ HI+ + +P V
Sbjct: 66 YVLVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSDAEVRHILKAMGIEEIKP--KVDI 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V ++ G F ++ V V ++ ++ V + +FGR TPVEL + QVEKI
Sbjct: 124 SIGQLVRITSGAFENWTASVLEVYPDRGKLKVLINLFGRETPVELDFVQVEKI 176
>gi|315452935|ref|YP_004073205.1| transcription antitermination protein nusG [Helicobacter felis ATCC
49179]
gi|315131987|emb|CBY82615.1| putative transcription antitermination protein nusG [Helicobacter
felis ATCC 49179]
Length = 177
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERR 59
M WY +Q YS E+ ++I + + + V E+ +P+E V+ + K K +ER
Sbjct: 1 MGMEWYAIQTYSGSEQAVKKAIENMVHENNIKDRVQEVIVPTEDVIELSKKSKNKVTERS 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYV IK + ++H I+ P+V F+G + P+P++D++I +I+ ++ P
Sbjct: 61 LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGESKKPTPLSDADIGNILEKITNRAA-PKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+++E GE V + +GPFA+F V+ D E ++ + V IFGR T +E+ Y+QVEKI+
Sbjct: 120 KIYYEKGEVVRIIEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTLIEILYSQVEKII 177
>gi|57234268|ref|YP_181717.1| transcription antitermination protein NusG [Dehalococcoides
ethenogenes 195]
gi|57224716|gb|AAW39773.1| transcription antitermination protein NusG [Dehalococcoides
ethenogenes 195]
Length = 177
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E++ + + R+ + + + +P+E V V+ G + ++ PGY
Sbjct: 8 WYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGLRRTIRKKILPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+EA + P V F
Sbjct: 68 VLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQMEA--ESPRVKVGFR 125
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 126 KGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177
>gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii
RHA1]
gi|110818507|gb|ABG93791.1| transcription antitermination protein [Rhodococcus jostii RHA1]
Length = 264
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 75 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE-IEHIMNQVEAAVQ-------- 115
+L++ + D+ + +++TP V GF+G PSP+T +E I+ ++ Q E Q
Sbjct: 135 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 194
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 195 GETGGESFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 254
Query: 167 ELAYNQVEKI 176
EL++ QV KI
Sbjct: 255 ELSFTQVAKI 264
>gi|239636935|ref|ZP_04677933.1| transcription termination/antitermination factor NusG
[Staphylococcus warneri L37603]
gi|239597483|gb|EEQ79982.1| transcription termination/antitermination factor NusG
[Staphylococcus warneri L37603]
gi|330686237|gb|EGG97849.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU121]
Length = 182
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ EK ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELDVGEQVRIKSGPFANQVGEVQEIEAEKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|224475684|ref|YP_002633290.1| transcription antitermination protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|548394|sp|P36264|NUSG_STACT RecName: Full=Transcription antitermination protein nusG
gi|426473|emb|CAA53738.1| nusG [Staphylococcus carnosus]
gi|222420291|emb|CAL27105.1| transcription antitermination protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 182
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLTKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQM--GMKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V EVGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VEVEVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|224542348|ref|ZP_03682887.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM
15897]
gi|224524730|gb|EEF93835.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM
15897]
Length = 199
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K E++ R+ GL +++ I IP ++ G+KVN FPG
Sbjct: 24 QWYVVNTYSGHENKVKENLEKRVESMGLQNILFNIVIPEHVETEIKNGKKVNKTVNMFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++TP V GF+G+ G P PV E++ I+ + +Q
Sbjct: 84 YVLVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVNKRELDPILKSM--GIQTTAVE 141
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F G+ V V GPFAS +G V+++D+EK V V G +TP+++ Q++KI
Sbjct: 142 VDFVEGDYVEVLAGPFASKSGKVESIDKEKETATVLVDFLGNLTPIDMELIQLKKI 197
>gi|116327511|ref|YP_797231.1| transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331876|ref|YP_801594.1| transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116120255|gb|ABJ78298.1| Transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125565|gb|ABJ76836.1| Transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 181
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q YS E K ++I + + L+ + ++ IP+ V ++ G+K ++R+
Sbjct: 3 TKKWYALQTYSGHENKVQKNIEKLVQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQV-EAAVQRPVS 119
PGYVLI+ M D I+ P V F+G+ + P P++ E++++ ++ + A + PV+
Sbjct: 63 PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F+VG+ + + DGPFA+F G+V + +K R+ V+V IFGR TPVEL Y QV+
Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178
>gi|302523949|ref|ZP_07276291.1| transcription termination/antitermination factor NusG [Streptomyces
sp. AA4]
gi|302432844|gb|EFL04660.1| transcription termination/antitermination factor NusG [Streptomyces
sp. AA4]
Length = 265
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 17/190 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V Y+ E K ++ R ++ + +I +P+E V ++ G++ +R+ PG
Sbjct: 76 EWYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPG 135
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVE----------- 111
Y+L++ + D+ + +++TP V GF+G PSP+T D ++ + QVE
Sbjct: 136 YILVRMDLNDQSWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPQVEKEAPAKAAKGG 195
Query: 112 -----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A P V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPV
Sbjct: 196 ESAAAATSGAPTVEVDFEVGESVTVMDGPFATLPATISEVNVDGQKLKVLVSIFGRETPV 255
Query: 167 ELAYNQVEKI 176
EL+++QV KI
Sbjct: 256 ELSFSQVSKI 265
>gi|149922222|ref|ZP_01910660.1| transcription antitermination protein NusG [Plesiocystis pacifica
SIR-1]
gi|149816962|gb|EDM76447.1| transcription antitermination protein NusG [Plesiocystis pacifica
SIR-1]
Length = 176
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 104/168 (61%), Gaps = 7/168 (4%)
Query: 11 YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV 70
Y N KK++E R+ ++ L+ +I +PSE+V+ R R+V R+FFPGY+ ++
Sbjct: 7 YENTVKKSLED---RIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFVRMR 63
Query: 71 MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV----QRPVSSVFFEVG 126
+T +H +K+TPKV GFL +G+ P PV+ E++ ++ + E + V + + VG
Sbjct: 64 LTKPAWHLVKNTPKVSGFLSSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDIDYSVG 123
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
++V V G FA+F+G V+ V+ EK ++ + V IFGR T VE+ +++VE
Sbjct: 124 DQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171
>gi|319891500|ref|YP_004148375.1| Transcription antitermination protein NusG [Staphylococcus
pseudintermedius HKU10-03]
gi|317161196|gb|ADV04739.1| Transcription antitermination protein NusG [Staphylococcus
pseudintermedius HKU10-03]
Length = 182
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ +
Sbjct: 69 YVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQM--GMNEKSID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V ++ GPFAS G + +++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VEVELGEQVRITSGPFASQVGEIHDIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|269128551|ref|YP_003301921.1| NusG antitermination factor [Thermomonospora curvata DSM 43183]
gi|268313509|gb|ACY99883.1| NusG antitermination factor [Thermomonospora curvata DSM 43183]
Length = 238
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M P WY+V Y+ E + +I R ++ + ++ +P V +++G++ +
Sbjct: 55 MLPGEWYVVHSYAGYENRVKANIETRTQSLNMEDYIFQVEVPQHEVTEIKQGKRQKVNEK 114
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAA 113
PGY+L++ +TD+ + +++TP V GF+G PSP++ E+ ++ + +A
Sbjct: 115 MLPGYILVRMELTDESWAAVRNTPGVTGFVGLLNKPSPLSLDEVAKLLAPPPEEEKGKAK 174
Query: 114 VQRPV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
Q V S+V FEVGE V V DGPF + V ++ E+ ++ V V IFGR TPVEL++NQ
Sbjct: 175 EQTKVTSTVEFEVGESVTVMDGPFQTLPATVSEINVEQQKLKVLVSIFGRETPVELSFNQ 234
Query: 173 VEKI 176
V KI
Sbjct: 235 VSKI 238
>gi|289641396|ref|ZP_06473560.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata]
gi|289508732|gb|EFD29667.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata]
Length = 269
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+S ++ + +I +P+E V ++ G++ +++ +PGY
Sbjct: 96 WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVIKNGKRQLVQQKKYPGY 155
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-- 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ A ++ V +V
Sbjct: 156 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRTEEVLSILAP-PAPREKKVETVRVQ 214
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 215 EFEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 269
>gi|297567070|ref|YP_003686042.1| NusG antitermination factor [Meiothermus silvanus DSM 9946]
gi|296851519|gb|ADH64534.1| NusG antitermination factor [Meiothermus silvanus DSM 9946]
Length = 185
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
M+ WY V Y E K ++ R++ + +L+ ++ IP+E VV R G K + RR
Sbjct: 1 MSIEWYAVHTYVGYEDKVKANLEKRVAALNMGNLIYQVLIPTEEVVEHRDGGKKDVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVE 111
FPGYV ++ M D + + +++TP V GF+GT P P+T E++HI+ + +
Sbjct: 61 LFPGYVFVQMDMGDDPAEVNEAWEAVRNTPGVTGFVGTATRPVPLTPDEVQHILEVSGLA 120
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P V F+ G+ V V GPFA F G+V V+ E+ +V V V IFGR TPVEL +
Sbjct: 121 GKKEAPKPQVSFKEGDVVRVVSGPFADFTGVVGEVNLERQKVKVLVSIFGRETPVELDFA 180
Query: 172 QV 173
QV
Sbjct: 181 QV 182
>gi|38233045|ref|NP_938812.1| transcription antitermination protein NusG [Corynebacterium
diphtheriae NCTC 13129]
gi|38199304|emb|CAE48935.1| Putative transcription antitermination protein [Corynebacterium
diphtheriae]
Length = 263
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + ++ +P E+ + +R G++ +R+ PGY
Sbjct: 73 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAIELRDGKRKLVKRKLLPGY 132
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----AVQ----- 115
VL++ + D+ + ++DTP V F+G N +PV ++ + EA AV
Sbjct: 133 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEATESEAVNAEGEK 192
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P ++V FEVGE V + G FAS + + +D E +++ V IFGR TPV
Sbjct: 193 VVAMPTDSTKPKTAVDFEVGEAVTILSGAFASVSATISGIDHENAKIQALVSIFGRETPV 252
Query: 167 ELAYNQVEKI 176
ELA++QVEKI
Sbjct: 253 ELAFDQVEKI 262
>gi|120402246|ref|YP_952075.1| transcription antitermination protein NusG [Mycobacterium
vanbaalenii PYR-1]
gi|119955064|gb|ABM12069.1| transcription antitermination protein nusG [Mycobacterium
vanbaalenii PYR-1]
Length = 266
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 75 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 135 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAATSAA 194
Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ ++RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR T
Sbjct: 195 AAASSEAGGIERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRET 254
Query: 165 PVELAYNQVEKI 176
PVEL +NQV KI
Sbjct: 255 PVELTFNQVAKI 266
>gi|326333421|ref|ZP_08199666.1| transcription termination/antitermination factor NusG
[Nocardioidaceae bacterium Broad-1]
gi|325948782|gb|EGD40877.1| transcription termination/antitermination factor NusG
[Nocardioidaceae bacterium Broad-1]
Length = 270
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ YS E + ++ R+ ++ + EI +P+E V ++ G++ +R PGY
Sbjct: 77 WFVIHTYSGMENRVKSNLENRIVSLNMEDYIHEIVVPTEEVPEIKNGQRKMVKRTVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
VL++ +TD+ + ++ TP V GF+G P P++ +E+E+++
Sbjct: 137 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMTEVENMLAPAVVAQAEAEAAAAGE 196
Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ ++PV V F G+ V V DGPFA+ + + ++ E RV V IFGR
Sbjct: 197 AATASSGATGTAKKPVEVVDFAEGDSVTVVDGPFATLHATITELNAESQRVKALVEIFGR 256
Query: 163 VTPVELAYNQVEKI 176
TPVEL++NQ+EK+
Sbjct: 257 ETPVELSFNQIEKV 270
>gi|300087458|ref|YP_003757980.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527191|gb|ADJ25659.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 178
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E++ +++ R+ L+ ++ + +P+E V V+ G++ R+ PG
Sbjct: 8 KWYVVHTYSGHEERVRKNLNERIETLSLEDEISRVEVPTEEEVEVKNGQRRTVRRKILPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+++ VM D+ ++ ++ TP V GF+G P+P+ +E++ I+ Q+EA + P V F
Sbjct: 68 YVIVQMVMNDQNWNIVRHTPGVTGFVGIEGKPTPLQQNEVDRIITQMEA--EAPRIKVGF 125
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G+ V V DGPF F G+V V +K +V V + +FGR TPVEL + QVEK+
Sbjct: 126 KIGQSVRVVDGPFVDFIGMVDEVHADKGKVKVLLSLFGRETPVELDFLQVEKL 178
>gi|146297208|ref|YP_001180979.1| NusG antitermination factor [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410784|gb|ABP67788.1| transcription antitermination protein nusG [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 175
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 7 KWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVLIKAVM + +++TI++ V GF+G P+P+TD EIE + + E V+ VF
Sbjct: 67 YVLIKAVMDNDIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAMGIKEEEVVE-----VFD 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVG+ V + GPFA F G V ++++E+ +V V + +FGR TPVE Y+QVEK
Sbjct: 122 IEVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174
>gi|312869692|ref|ZP_07729839.1| transcription termination/antitermination factor NusG
[Lactobacillus oris PB013-T2-3]
gi|311094741|gb|EFQ53038.1| transcription termination/antitermination factor NusG
[Lactobacillus oris PB013-T2-3]
Length = 181
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E + ++ R G+ + + + E V V+ G+ FPG
Sbjct: 7 RWYVLHTYSGYENRVKSNLESRAQSMGMQDYIFRVVVAEETVREVKDGQAKEVTENTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ ++TP V GFLG+ G P+P+ E+E IM ++ A + VS
Sbjct: 67 YVLVEMIMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPDEVERIMKRMGADI--TVSD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ V V GPFA G V VD EK ++ V V +FGR T EL ++QV+ +
Sbjct: 125 IDVKEGDTVKVIAGPFADLTGKVTEVDHEKQKLKVNVEMFGRETSAELGFDQVDTV 180
>gi|300782525|ref|YP_003762816.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32]
gi|299792039|gb|ADJ42414.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32]
Length = 288
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 17/190 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V Y+ E K ++ R ++ + +I +P+E V ++ G++ +R+ PG
Sbjct: 99 EWYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPG 158
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVE----------- 111
Y+L++ + D + +++TP V GF+G PSP+T D ++ + +VE
Sbjct: 159 YILVRMDLNDASWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPKVESEAPAKSGKGE 218
Query: 112 -----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A + P V FE+GE V V DGPFA+ + V+ + ++ V V IFGR TPV
Sbjct: 219 STATAAPLGGPAVEVDFEIGESVTVMDGPFATLPATISEVNIDGQKLKVLVSIFGRETPV 278
Query: 167 ELAYNQVEKI 176
EL++NQV KI
Sbjct: 279 ELSFNQVSKI 288
>gi|294792777|ref|ZP_06757924.1| transcription termination/antitermination factor NusG [Veillonella
sp. 6_1_27]
gi|294794531|ref|ZP_06759667.1| transcription termination/antitermination factor NusG [Veillonella
sp. 3_1_44]
gi|294454861|gb|EFG23234.1| transcription termination/antitermination factor NusG [Veillonella
sp. 3_1_44]
gi|294456676|gb|EFG25039.1| transcription termination/antitermination factor NusG [Veillonella
sp. 6_1_27]
Length = 178
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 66 YVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVDV 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ +K + + V +F R T VEL ++QVEK
Sbjct: 125 EVGETVRITSGAFEDKLGVITELNPDKGTLKLSVEMFNRDTEVELEFSQVEK 176
>gi|312793745|ref|YP_004026668.1| nusg antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312876856|ref|ZP_07736833.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
gi|311796371|gb|EFR12723.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
gi|312180885|gb|ADQ41055.1| NusG antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 174
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + ++ V VF
Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM------GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GPF F G V ++ E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKVVSGPFTDFYGPVVEINRERKKVKVMLNLFGRETPVEFDYHQVERL 174
>gi|303228911|ref|ZP_07315722.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-134-V-Col7a]
gi|303231237|ref|ZP_07317975.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-049-V-Sch6]
gi|302514144|gb|EFL56148.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-049-V-Sch6]
gi|302516437|gb|EFL58368.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-134-V-Col7a]
Length = 178
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 66 YVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVDV 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++QVEK
Sbjct: 125 EVGETVRITSGAFEDRLGVITEINPEKGTLKLNVEMFNRDTEVEVEFSQVEK 176
>gi|327399535|ref|YP_004340404.1| NusG antitermination factor [Hippea maritima DSM 10411]
gi|327182164|gb|AEA34345.1| NusG antitermination factor [Hippea maritima DSM 10411]
Length = 179
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62
+WY + E K + +L GL+ V EI +P E V+ ++K K ++ +P
Sbjct: 5 KWYAIHTQVGYEDKVKVMLQNKLKEEGLEGEVEEIFVPFEEVIEIKKNNKKEKVKKCLYP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV +KA M+DK+Y+ +K V GF+G P P+ + EI IM +VE++ + P SV
Sbjct: 65 SYVFVKARMSDKLYNLVKRMSFVSGFVGYKNEPLPMDEKEIRDIMQRVESSKEAPRLSVS 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE+V V DGPFA+F G + VD +K R+ + + IFGR TPVEL YNQVEK+
Sbjct: 125 FEPGEQVRVLDGPFANFTGTIDEVDVDKGRLRILISIFGRSTPVELNYNQVEKV 178
>gi|15896397|ref|NP_349746.1| transcription antitermination protein NusG [Clostridium
acetobutylicum ATCC 824]
gi|15026215|gb|AAK81086.1|AE007810_5 Transcription antiterminator NusG [Clostridium acetobutylicum ATCC
824]
Length = 173
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L +L+ +I +P + V + G+K + ++ FP
Sbjct: 6 KWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFPS 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK VMTD+ ++ +++T GF+G G P P+TD E++ + ++ V+S+
Sbjct: 66 YVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSM------GIREKVASIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 120 VVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 172
>gi|228475251|ref|ZP_04059976.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis SK119]
gi|314937159|ref|ZP_07844506.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis subsp. hominis C80]
gi|228270716|gb|EEK12125.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis SK119]
gi|313655778|gb|EFS19523.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis subsp. hominis C80]
Length = 182
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|325510553|gb|ADZ22189.1| transcription antitermination protein NusG [Clostridium
acetobutylicum EA 2018]
Length = 178
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L +L+ +I +P + V + G+K + ++ FP
Sbjct: 11 KWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFPS 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK VMTD+ ++ +++T GF+G G P P+TD E++ + ++ V+S+
Sbjct: 71 YVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSM------GIREKVASIDI 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 125 VVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 177
>gi|291561991|emb|CBL40802.1| transcription antitermination protein nusG [butyrate-producing
bacterium SS3/4]
Length = 171
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K I + GL + E+++P E V+ ++ G + ER+ FPG
Sbjct: 5 QWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPLEEVIELKNGAQKQVERKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+++ E+ + + P V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLSEEEMMSL------GFKAPDVVVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V+ G + G+++ V+E K + + V +FGR TPVEL++++++K+
Sbjct: 119 AVGDTVVVTAGAWKDTVGVIRTVNESKQSITINVEMFGRETPVELSFSEIKKM 171
>gi|223042705|ref|ZP_03612753.1| transcription termination/antitermination factor NusG
[Staphylococcus capitis SK14]
gi|314932760|ref|ZP_07840129.1| transcription termination/antitermination factor NusG
[Staphylococcus caprae C87]
gi|222443559|gb|EEE49656.1| transcription termination/antitermination factor NusG
[Staphylococcus capitis SK14]
gi|313654441|gb|EFS18194.1| transcription termination/antitermination factor NusG
[Staphylococcus caprae C87]
Length = 182
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELVMTDQSWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|302871673|ref|YP_003840309.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47]
gi|302574532|gb|ADL42323.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47]
Length = 174
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + ++ V VF
Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM------GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + GPF F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKIVSGPFTDFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174
>gi|323465328|gb|ADX77481.1| transcription termination/antitermination factor NusG
[Staphylococcus pseudintermedius ED99]
Length = 182
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ +
Sbjct: 69 YVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQM--GMNEKSID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V ++ GPFAS G + ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VEVELGEQVRITSGPFASQVGEIHEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|312135327|ref|YP_004002665.1| nusg antitermination factor [Caldicellulosiruptor owensensis OL]
gi|311775378|gb|ADQ04865.1| NusG antitermination factor [Caldicellulosiruptor owensensis OL]
Length = 174
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVLIKA+M +++++TI++ V GF+G P+P+TD EIE + ++ V VF
Sbjct: 67 YVLIKAIMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM------GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + GPF+ F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKIVSGPFSDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174
>gi|260885404|ref|ZP_05734982.2| transcription termination/antitermination factor NusG [Prevotella
tannerae ATCC 51259]
gi|260852286|gb|EEX72155.1| transcription termination/antitermination factor NusG [Prevotella
tannerae ATCC 51259]
Length = 180
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ S E K E I + + V+++ +P+E++V V G++ ER + PGY
Sbjct: 8 WYVLRAISGKENKVKEYIDAEIKLNAFQGNVSQVLVPTEKIVQVHNGKRTVKERNYLPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPVSSVF 122
VL++A + ++ H +++TP V+GFL +P+P+ +SE+ I+ + E V + +V
Sbjct: 68 VLVEAKLVGEITHMLRNTPNVLGFLPDTNDPTPLRESEVNRILGKADEEPDVNEAL-TVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F +G+ V V++GPF+ F+G V+ +D+EK +V V V +FGR T ++L + QVEK
Sbjct: 127 FVIGDSVKVTEGPFSGFSGTVEKIDDEKKKVTVTVKVFGRSTGLDLGFMQVEK 179
>gi|154484467|ref|ZP_02026915.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC
27560]
gi|149734315|gb|EDM50232.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC
27560]
Length = 172
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L + E+++P++ VV ++ G + SE++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKTTIEQTIENRKLHDQILEVSVPTQEVVELKNGVRKVSEKKLFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI VM D ++ +++T V GF+G G P P+TD+E+ + ++ V F+
Sbjct: 66 VLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDTEM------LSLGIKNEKVEVDFK 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ + V G ++ G+VK +DE + V + V +FGR TPVEL + +V+K+
Sbjct: 120 EGDMIAVIGGVWSGTAGVVKRIDENRQTVTINVDMFGRETPVELNFTEVKKM 171
>gi|87123508|ref|ZP_01079359.1| NusG antitermination factor [Synechococcus sp. RS9917]
gi|86169228|gb|EAQ70484.1| NusG antitermination factor [Synechococcus sp. RS9917]
Length = 220
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V V+K G + ++E + FP
Sbjct: 37 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 96
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 97 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 154
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 155 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 214
Query: 172 QVEK 175
QV K
Sbjct: 215 QVSK 218
>gi|88809791|ref|ZP_01125297.1| transcription antitermination protein NusG [Synechococcus sp. WH
7805]
gi|88786175|gb|EAR17336.1| transcription antitermination protein NusG [Synechococcus sp. WH
7805]
Length = 222
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V V+K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
QV K
Sbjct: 217 QVSK 220
>gi|303239009|ref|ZP_07325539.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
gi|302593347|gb|EFL63065.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
Length = 177
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG
Sbjct: 11 KWYVVHTYSGYENKVKANLEKIVENRSMQEYILDIVVPMEEQIEIKDGKKKATLKKVFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++ V GF+G G P P++D E+ + V+ + + +
Sbjct: 71 YVLVKMIMSDESWYVVRNCRGVTGFVGPGSKPVPLSDEEVRVM------GVEEFMPVLDY 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI
Sbjct: 125 EVGDNVRVATGPLENFIGIVEEINFEKKKVRVSVSMFGRETPVELELFQIQKI 177
>gi|310829151|ref|YP_003961508.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612]
gi|308740885|gb|ADO38545.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612]
Length = 179
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ YS E K SI + ++ + E+ +P + VV + G++V E++ FPGY
Sbjct: 11 WYVAHTYSGYENKVKASIEATVENRHMEDQILEVQVPVQEVVETKDGKRVVREKKLFPGY 70
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V++K MTD ++ +++T V GF+G P P+T +E++++ +++ + E
Sbjct: 71 VMVKMFMTDDSWYVVRNTRGVTGFVGPASKPVPLTKAELKNM------GIKQQAIQIDLE 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF F GI++ ++ EKS+V V + +FGR TP EL + Q++KI
Sbjct: 125 VGDEVNVVDGPFEGFAGIIEEINLEKSKVKVNISMFGRETPTELEFEQIQKI 176
>gi|242372754|ref|ZP_04818328.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
M23864:W1]
gi|242349527|gb|EES41128.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
M23864:W1]
Length = 182
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|239825679|ref|YP_002948303.1| transcription antitermination protein NusG [Geobacillus sp. WCH70]
gi|239805972|gb|ACS23037.1| NusG antitermination factor [Geobacillus sp. WCH70]
Length = 177
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G+ + I +P E + G+K ++++
Sbjct: 1 MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETDTKNGKKKATKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E+E I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRMGMPLTE- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE ++Q+EKI
Sbjct: 120 -IDVDYELNETVRVKEGPFANFTGKIEEIDLDKRKVKVLVNMFGRETPVEFEFSQIEKI 177
>gi|296268525|ref|YP_003651157.1| NusG antitermination factor [Thermobispora bispora DSM 43833]
gi|296091312|gb|ADG87264.1| NusG antitermination factor [Thermobispora bispora DSM 43833]
Length = 246
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V Y+ E + ++I R+ ++ + ++ +P+ V ++ G+K + R PG
Sbjct: 66 EWYVVHSYAGYENRVKQNIESRIISLNMEDYIYQVEVPTHTVTEIKGGKKTPVKERVLPG 125
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQ 115
YVL++ V+TD+ + +++TP V GF+G PSP+ ++ ++ +A+ +
Sbjct: 126 YVLVRMVLTDESWAAVRNTPGVTGFVGLSNKPSPLGLDDVARLLAPEPEEEEAAAKASAK 185
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V FEVGE V V DGPFA+ V V E ++ V V IFGR TPVEL+++QV K
Sbjct: 186 SAAPAVEFEVGESVTVMDGPFATLPATVSEVSPESQKLKVLVSIFGRETPVELSFDQVAK 245
Query: 176 I 176
+
Sbjct: 246 L 246
>gi|154500409|ref|ZP_02038447.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC
29799]
gi|150270914|gb|EDM98197.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC
29799]
Length = 174
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E SI + + L+ E++IP E V + ER+ F
Sbjct: 4 SAKWYVVHTYSGYENTVAASIEKAVENRNMHDLIQEVSIPLETVTEITDNGPKTVERKVF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K VMTD+ +H +++ GF+G+G P++D EI + V++ +
Sbjct: 64 PGYVLVKMVMTDETWHLVRNVRGATGFVGSGNKAIPLSDEEIAAL------GVEKREVVI 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V ++DG S+ G V +D E +V + V +FGR TPVEL +QVE +
Sbjct: 118 GYAVGDNVRITDGALKSYLGTVDEIDMEHEKVRIVVSMFGRETPVELDLDQVEPV 172
>gi|62185279|ref|YP_220064.1| transcription antitermination protein NusG [Chlamydophila abortus
S26/3]
gi|62148346|emb|CAH64113.1| putative transcription antitermination protein [Chlamydophila
abortus S26/3]
Length = 182
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ G SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEGFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLGGG-VPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
+VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|19551718|ref|NP_599720.1| transcription antitermination protein NusG [Corynebacterium
glutamicum ATCC 13032]
gi|62389373|ref|YP_224775.1| transcription antitermination protein NusG [Corynebacterium
glutamicum ATCC 13032]
gi|7108627|gb|AAF36506.1|AF130462_3 transcriptional antiterminator protein NusG [Corynebacterium
glutamicum]
gi|14041187|emb|CAC38383.1| NusG protein [Corynebacterium glutamicum]
gi|21323240|dbj|BAB97868.1| Transcription antiterminator [Corynebacterium glutamicum ATCC
13032]
gi|41324707|emb|CAF19189.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Corynebacterium
glutamicum ATCC 13032]
Length = 318
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY
Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ M D+V+ ++DTP V F+G N +PV ++ + E AV
Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAA 243
Query: 115 ------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
++P +V F VGE V + G FAS + + ++D E ++ V V IFGR
Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303
Query: 163 VTPVELAYNQVEKI 176
TPV+L+++QVEK+
Sbjct: 304 ETPVDLSFDQVEKV 317
>gi|313893043|ref|ZP_07826620.1| transcription termination/antitermination factor NusG [Veillonella
sp. oral taxon 158 str. F0412]
gi|313442396|gb|EFR60811.1| transcription termination/antitermination factor NusG [Veillonella
sp. oral taxon 158 str. F0412]
Length = 178
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 66 YVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVDV 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++Q+EK
Sbjct: 125 EVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176
>gi|298346273|ref|YP_003718960.1| transcription antitermination protein [Mobiluncus curtisii ATCC
43063]
gi|304389961|ref|ZP_07371918.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315657212|ref|ZP_07910096.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|298236334|gb|ADI67466.1| transcription antitermination protein [Mobiluncus curtisii ATCC
43063]
gi|304326854|gb|EFL94095.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315492315|gb|EFU81922.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 271
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 113/193 (58%), Gaps = 22/193 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
RWY+V YS+ EK+ ++I R++ + G++ V ++ IP E V V+ K RKV +R
Sbjct: 80 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKV-VQRPRI 138
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------- 107
PGYVL++ M + + +KDTP V GF+G ++P P+T +E+ +++
Sbjct: 139 PGYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVED 198
Query: 108 NQVE--AAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
QVE A QR PV++ FEVG+ V ++ GPF + + + V+ E ++ V V IF R
Sbjct: 199 GQVEISQATQRTAPVAA-DFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERE 257
Query: 164 TPVELAYNQVEKI 176
TPVEL +NQV KI
Sbjct: 258 TPVELNFNQVTKI 270
>gi|319399715|gb|EFV87964.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis FRI909]
Length = 182
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELDVGEQVRIQSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|148240711|ref|YP_001226098.1| transcription antitermination protein NusG [Synechococcus sp. WH
7803]
gi|147849250|emb|CAK24801.1| Transcription antiterminator protein NusG [Synechococcus sp. WH
7803]
Length = 222
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKIKKDGSRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
QV K
Sbjct: 217 QVSK 220
>gi|312127420|ref|YP_003992294.1| nusg antitermination factor [Caldicellulosiruptor hydrothermalis
108]
gi|311777439|gb|ADQ06925.1| NusG antitermination factor [Caldicellulosiruptor hydrothermalis
108]
Length = 174
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLADRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + ++ V +F
Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM------GIKEEVVEIFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GPF F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKVVSGPFTDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174
>gi|315654868|ref|ZP_07907773.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii ATCC 51333]
gi|315490829|gb|EFU80449.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii ATCC 51333]
Length = 271
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 113/193 (58%), Gaps = 22/193 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
RWY+V YS+ EK+ ++I R++ + G++ V ++ IP E V V+ K RKV +R
Sbjct: 80 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKV-VQRPRI 138
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------- 107
PGYVL++ M + + +KDTP V GF+G ++P P+T +E+ +++
Sbjct: 139 PGYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVED 198
Query: 108 NQVE--AAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
QVE A QR PV++ FEVG+ V ++ GPF + + + V+ E ++ V V IF R
Sbjct: 199 GQVEISQATQRTAPVAA-DFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERE 257
Query: 164 TPVELAYNQVEKI 176
TPVEL +NQV KI
Sbjct: 258 TPVELNFNQVTKI 270
>gi|27467217|ref|NP_763854.1| transcription antitermination protein [Staphylococcus epidermidis
ATCC 12228]
gi|57866121|ref|YP_187773.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis RP62A]
gi|242241868|ref|ZP_04796313.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
W23144]
gi|251809953|ref|ZP_04824426.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
BCM-HMP0060]
gi|282875013|ref|ZP_06283888.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis SK135]
gi|293367912|ref|ZP_06614550.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis M23864:W2(grey)]
gi|38604831|sp|Q8CQ85|NUSG_STAES RecName: Full=Transcription antitermination protein nusG
gi|81675390|sp|Q5HRL6|NUSG_STAEQ RecName: Full=Transcription antitermination protein nusG
gi|27314759|gb|AAO03896.1|AE016744_299 transcription antitermination protein [Staphylococcus epidermidis
ATCC 12228]
gi|57636779|gb|AAW53567.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis RP62A]
gi|242234646|gb|EES36958.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
W23144]
gi|251806496|gb|EES59153.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296341|gb|EFA88860.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis SK135]
gi|291317941|gb|EFE58349.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis M23864:W2(grey)]
gi|329729454|gb|EGG65857.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU144]
gi|329734659|gb|EGG70966.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU028]
gi|329738062|gb|EGG74283.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU045]
Length = 182
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 69 YVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 127 VELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|259500947|ref|ZP_05743849.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
iners DSM 13335]
gi|302190601|ref|ZP_07266855.1| transcription antiterminator [Lactobacillus iners AB-1]
gi|309803749|ref|ZP_07697835.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 11V1-d]
gi|309804673|ref|ZP_07698738.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 09V1-c]
gi|309806514|ref|ZP_07700518.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 03V1-b]
gi|309808458|ref|ZP_07702357.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 01V1-a]
gi|309809223|ref|ZP_07703093.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 2503V10-D]
gi|312871558|ref|ZP_07731651.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 3008A-a]
gi|312872528|ref|ZP_07732596.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2062A-h1]
gi|312873886|ref|ZP_07733924.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2052A-d]
gi|312874827|ref|ZP_07734846.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2053A-b]
gi|315653972|ref|ZP_07906888.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lactobacillus iners ATCC 55195]
gi|325912459|ref|ZP_08174854.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 143-D]
gi|325913127|ref|ZP_08175497.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 60-B]
gi|329920454|ref|ZP_08277186.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 1401G]
gi|259167641|gb|EEW52136.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
iners DSM 13335]
gi|308164158|gb|EFO66419.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 11V1-d]
gi|308166065|gb|EFO68283.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 09V1-c]
gi|308167113|gb|EFO69288.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 03V1-b]
gi|308168286|gb|EFO70405.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 01V1-a]
gi|308170457|gb|EFO72480.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 2503V10-D]
gi|311089572|gb|EFQ47997.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2053A-b]
gi|311090562|gb|EFQ48968.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2052A-d]
gi|311091890|gb|EFQ50266.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2062A-h1]
gi|311092953|gb|EFQ51304.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 3008A-a]
gi|315488668|gb|EFU78314.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lactobacillus iners ATCC 55195]
gi|325475801|gb|EGC78972.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 143-D]
gi|325477548|gb|EGC80690.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 60-B]
gi|328936130|gb|EGG32583.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 1401G]
Length = 183
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E+K + + R G+ + + +P + V +G++ + + FPG
Sbjct: 8 QWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKVDEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM--NQVEAAVQRPV 118
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ D EI+ I+ EAA Q
Sbjct: 68 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRILADQNKEAAPQ--- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S FEVGE V +++GPF + G + ++ +K ++ V + +FGR T EL + QV+K
Sbjct: 125 -SYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKKF 181
>gi|300932756|ref|ZP_07148012.1| transcription antitermination protein NusG [Corynebacterium
resistens DSM 45100]
Length = 313
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 31/201 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQ YS E K ++ R G+D + E+ +P E V +R G++ +R+ PGY
Sbjct: 114 WYIVQCYSGYENKVKTNLEMRAQTLGVDEHIHEVVVPIEEVTELRDGKRKQVKRKLLPGY 173
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
VL++ + D + ++DTP V F+G P+PV E+ + E A +P S+
Sbjct: 174 VLVRMELEDAAWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETA--KPASTEEGT 231
Query: 121 -------------------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V +EVGE V + GPFAS + + +D +R+
Sbjct: 232 EEAGAVDVSATGVATPPKPASESVVVDYEVGESVTILSGPFASVSATISEIDTTANRLKA 291
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
V IFGR TPVEL ++QVEK+
Sbjct: 292 MVSIFGRETPVELEFDQVEKL 312
>gi|145294627|ref|YP_001137448.1| transcription antitermination protein NusG [Corynebacterium
glutamicum R]
gi|140844547|dbj|BAF53546.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 318
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY
Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ M D+V+ ++DTP V F+G N +PV ++ + E AV
Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAD 243
Query: 115 ------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
++P +V F VGE V + G FAS + + ++D E ++ V V IFGR
Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303
Query: 163 VTPVELAYNQVEKI 176
TPV+L+++QVEK+
Sbjct: 304 ETPVDLSFDQVEKV 317
>gi|291458135|ref|ZP_06597525.1| transcription termination/antitermination factor NusG [Oribacterium
sp. oral taxon 078 str. F0262]
gi|291419218|gb|EFE92937.1| transcription termination/antitermination factor NusG [Oribacterium
sp. oral taxon 078 str. F0262]
Length = 176
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+ YS E K + + GL L+ E+++P + V+ ++ G + ++++ FPG
Sbjct: 9 RWYVAHTYSGYENKVKMDLEKTIENRGLQDLILEVSVPMQPVIEMKNGVEKKTDKKMFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D+ ++ +++T V GF+G G P P+++ EI I+ E+ + V F
Sbjct: 69 YVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEI-RILGYRESEIL-----VDF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V V+ G + G++ ++E+K V + V +FGR TPVEL+Y +++K+
Sbjct: 123 ALGDTVNVTSGAWKDTIGVITEINEQKRTVTINVEMFGRDTPVELSYGEIQKL 175
>gi|291544032|emb|CBL17141.1| transcription antitermination protein nusG [Ruminococcus sp. 18P13]
Length = 175
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + I + L L+ E+ +P+E+V + G+ ER+ +PG
Sbjct: 6 KWYVIHTYSGYENKVAQDIEKVVENRKLHDLILEVKVPTEKVTEITDGKTKEVERKTYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K V TD ++ +++T V GF+G P+P+T+ E+ + + + VQ V F
Sbjct: 66 YVLLKMVYTDDSWYVVRNTRGVTGFVGPASEPTPLTEKEVAALGVETGSTVQ-----VNF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V VS F GIV++++ E V V + +FGR TP LA NQV K+
Sbjct: 121 AVGDSVKVSGTAMDGFVGIVQSINLEDQTVDVMISMFGRETPATLALNQVIKL 173
>gi|307691690|ref|ZP_07633927.1| NusG antitermination factor [Ruminococcaceae bacterium D16]
Length = 174
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E +I + L ++ EI+IP E V + ER+ FPGY
Sbjct: 7 WYVVHTYSGYENTVKATIEKYVENRHLQDMIHEISIPLETVTEITDNGPKEVERKVFPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K VM D+ +H +++ V GFLG G P P+++ ++ + V++ V ++
Sbjct: 67 VLVKMVMNDETWHVVRNIRGVTGFLGEGNKPIPLSEDDVASL------GVEKREVVVGYQ 120
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++DG SF G V+ +D E+ +V V V +FGR TPVEL +QVE +
Sbjct: 121 VGDSVKITDGALESFLGTVEELDLERGKVRVVVSMFGRETPVELELDQVEPM 172
>gi|160934068|ref|ZP_02081455.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753]
gi|156866741|gb|EDO60113.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753]
Length = 173
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 6/171 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + L L+ E+ +P+E V V+ + ER+ +P
Sbjct: 6 KWYVVHTYSGYENKVASNLEKTVENRQLQDLIQEVRVPTEMVTEVKDNKTRQVERKIYPS 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K V+TD+ ++ +++ GF+G P P+TD E+ + +V V +
Sbjct: 66 YVLVKMVLTDESWYVVRNIRGCTGFVGPSSKPIPLTDEEVARMGVEVRQV------EVSY 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
EVG+ V + DGP F G V+ ++ EK+ V V V +FGR TPVEL +QVE
Sbjct: 120 EVGDSVRIVDGPLDGFVGTVEEMNTEKNSVRVTVSMFGRETPVELELDQVE 170
>gi|56750899|ref|YP_171600.1| transcription antitermination protein NusG [Synechococcus elongatus
PCC 6301]
gi|56685858|dbj|BAD79080.1| transcription antitermination protein NusG [Synechococcus elongatus
PCC 6301]
Length = 209
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP +V ++K G + ++E + FP
Sbjct: 26 RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 85
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ ++ D + +++TP VI F+G + P P++ E+ I +
Sbjct: 86 GYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKR-- 143
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A Q+P + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 144 AQEQKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFN 203
Query: 172 QVEK 175
QV+K
Sbjct: 204 QVQK 207
>gi|323339376|ref|ZP_08079661.1| transcription termination/antitermination factor NusG
[Lactobacillus ruminis ATCC 25644]
gi|323093199|gb|EFZ35786.1| transcription termination/antitermination factor NusG
[Lactobacillus ruminis ATCC 25644]
Length = 223
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 104/178 (58%), Gaps = 7/178 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ R G++ + + +P E + + + G++ + + FP
Sbjct: 49 KWYVLHTYSGYENKVKSNLESRAESMGMEDYIFRVVVPEEEKCETTKTGKEKVEKLKTFP 108
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ D EI+ I+ V
Sbjct: 109 GYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLDEEIQTILRSVGMTRNADFD 168
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ EVG+ + +++G FA G + +D EK ++H + +FGR T EL+++QVE++V
Sbjct: 169 A---EVGDTITITEGAFAGQVGKITEIDSEKMKLHAMIDVFGRETDAELSFDQVERLV 223
>gi|150010981|gb|ABR57147.1| transcription antitermination protein [Staphylococcus xylosus]
Length = 182
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEKIFRVVIPEEEETQVKDGKAKTLSKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E I+ Q+ ++
Sbjct: 69 YVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQM--GMKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V + GPFA+ G ++ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 127 VQVELGEQVRIKSGPFANQVGEIQEIETDKFKLTVLVDMFGRETPVEVEFDQVEKL 182
>gi|225017232|ref|ZP_03706424.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum
DSM 5476]
gi|224950007|gb|EEG31216.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum
DSM 5476]
Length = 174
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V YS E K ++I + L L+ E+ IP+E VV ++ + ER+ F
Sbjct: 4 TAKWYVVHTYSGYENKVAQNIEKAVESRQLHDLIQEVKIPTETVVEIKDNKTREVERKLF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K ++TD ++ +++ V GF+G P P+T E+E + V+ V
Sbjct: 64 PSYVLVKMIITDDTWYVVRNIRGVTGFVGPTSKPIPLTKKEVEAL------GVEDKKVEV 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+++G+ V + DG F GIV+ +D + + V V V +FGR TPVEL QV
Sbjct: 118 DYQIGDSVKIVDGSLEGFIGIVQELDVDNNMVKVTVSMFGRETPVELELTQV 169
>gi|81299446|ref|YP_399654.1| transcription antitermination protein NusG [Synechococcus elongatus
PCC 7942]
gi|81168327|gb|ABB56667.1| transcription antitermination protein nusG [Synechococcus elongatus
PCC 7942]
Length = 205
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP +V ++K G + ++E + FP
Sbjct: 22 RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 81
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ ++ D + +++TP VI F+G + P P++ E+ I +
Sbjct: 82 GYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKR-- 139
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A Q+P + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N
Sbjct: 140 AQEQKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFN 199
Query: 172 QVEK 175
QV+K
Sbjct: 200 QVQK 203
>gi|18311400|ref|NP_563334.1| transcription antitermination protein NusG [Clostridium perfringens
str. 13]
gi|110800065|ref|YP_697107.1| transcription antitermination protein NusG [Clostridium perfringens
ATCC 13124]
gi|110803104|ref|YP_699676.1| transcription antitermination protein NusG [Clostridium perfringens
SM101]
gi|169344019|ref|ZP_02865009.1| transcription termination/antitermination factor NusG [Clostridium
perfringens C str. JGS1495]
gi|18146084|dbj|BAB82124.1| transcription antitermination protein [Clostridium perfringens str.
13]
gi|110674712|gb|ABG83699.1| transcription termination/antitermination factor NusG [Clostridium
perfringens ATCC 13124]
gi|110683605|gb|ABG86975.1| transcription termination/antitermination factor NusG [Clostridium
perfringens SM101]
gi|169297843|gb|EDS79939.1| transcription termination/antitermination factor NusG [Clostridium
perfringens C str. JGS1495]
Length = 173
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L+ L+ +I +P E + G+ + ++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLESLILDIQVPMEESAEEKDGKIKVTLKKKFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV++ VMTD+ ++ +++T V GF+G G P P+TD E+E + V + +
Sbjct: 66 YVIVNMVMTDESWYVVRNTRGVTGFVGPGSKPVPLTDEEVESM------GVMKTAMDIDL 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE + + G + F I++ ++ EK ++ V +FGR T EL +NQVEK+
Sbjct: 120 EVGETINIISGALSGFAAIIQEINVEKGKIKALVDMFGRETLAELDFNQVEKL 172
>gi|308233405|ref|ZP_07664142.1| transcription termination/antitermination factor NusG [Atopobium
vaginae DSM 15829]
gi|328943541|ref|ZP_08241006.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Atopobium vaginae DSM 15829]
gi|327491510|gb|EGF23284.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Atopobium vaginae DSM 15829]
Length = 181
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M WY++ YS E K + R+ GL+ + +I IP+E VV V+ G++ N E
Sbjct: 1 MAKHWYVIHTYSGYENKVKSDLEHRIETYGLEDQIVDIKIPTEEVVQVKSDGKRKNVETN 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--P 117
FPGYVL++ + D + +++T V GF+G P+P+ SE +M + A+ ++ P
Sbjct: 61 VFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIDGKPAPLRRSEFNKMMRKSNASQEKVTP 120
Query: 118 VS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + FEVG V V GP F G + V E ++ V + IFGR TPVEL NQVE I
Sbjct: 121 QSITTDFEVGMAVRVIQGPLEKFEGKITEVMVEAGKLKVSLTIFGRETPVELTMNQVEVI 180
>gi|40786356|dbj|BAD07006.1| transcription anti-termination factor [Onion yellows phytoplasma]
Length = 204
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 107/177 (60%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P
Sbjct: 30 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD+ + +K+TP++ GFLG+ G P P++++EI ++ ++ + +P
Sbjct: 90 GYVFIQMMITDRSWFVVKNTPRITGFLGSSGMGSKPVPLSENEINPVLLKM-GIINKPDY 148
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G++V + G F+ G V ++D+++ ++ VEV +FGR TPVE+++N ++I
Sbjct: 149 KNF--IGKKVEIISGSFSGQIGQVSSIDDDREKMKVEVDLFGRATPVEISFNDFKEI 203
>gi|87306550|ref|ZP_01088697.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645]
gi|87290729|gb|EAQ82616.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645]
Length = 294
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI++V SN EK ++ R+ +GL+ E+ +P+E +V + G+K ++R+ +PGY
Sbjct: 120 WYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYPGY 179
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPV-SSV 121
+++ + D + +++T + F G P+P+ E+E I +V E + PV +++
Sbjct: 180 IVVHMAINDDTWFLVRETGGIGDFTGAAGRPTPMLAHEVERITKKVEDEETGEEPVKTNI 239
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++G+ V +++G F +F G V+ +DE RV V + IFGR TPVE+ + Q+E +
Sbjct: 240 RFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294
>gi|73663528|ref|YP_302309.1| transcription antitermination factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72496043|dbj|BAE19364.1| transcription antitermination factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 182
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ FPG
Sbjct: 9 RWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTLTKKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E I+ Q+ ++
Sbjct: 69 YVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQM--GMKEKTID 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V ++GE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 127 VQIDLGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182
>gi|218283698|ref|ZP_03489659.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989]
gi|218215687|gb|EEC89225.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989]
Length = 181
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY+V Y E + E++ R+ GL+ + +I + E+ + + G+ V
Sbjct: 4 LKKEWYVVNTYVGQENRVKENLERRIKTMGLEDFLFQIVVAEEKEIEYKNGKPVEKTHNL 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
F GY+L++ +MTD+ ++ +++TP V GF+G+ G P PV E++ ++ ++ Q
Sbjct: 64 FSGYLLVQMIMTDEAWYIVRNTPGVTGFIGSSGKGAKPFPVAQEEVDAVLRRL--GRQDV 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+RV +++G F + G ++++DEEK V +++FGR TP E+ Y ++K+
Sbjct: 122 NVQVDFEVGDRVEITNGAFKNSEGTIESMDEEKKEATVLLILFGRETPTEIPYMDLKKV 180
>gi|238018607|ref|ZP_04599033.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748]
gi|237865078|gb|EEP66368.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748]
Length = 178
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FPG
Sbjct: 6 KWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P ++
Sbjct: 66 YVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPSINIDV 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++Q+EK
Sbjct: 125 EVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176
>gi|222834348|gb|EEE72825.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 71 MTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
MTD+ +H +K+T KV GF+G N PSP++ E++ IM Q++ V++P FEVGE V
Sbjct: 3 MTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTLFEVGEMV 62
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 63 RVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 109
>gi|331699210|ref|YP_004335449.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190]
gi|326953899|gb|AEA27596.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190]
Length = 327
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 104/185 (56%), Gaps = 13/185 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 143 WYVVHSYAGYENKVKSNLETRVQTLDVEDFIYQVEVPTEEVTEIKNGQRKQVQRKVLPGY 202
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAA---VQRPVSS 120
+L++ + D+ + +++TP V GF+G PSP++ D ++ ++ + E A +P ++
Sbjct: 203 ILVRMELNDQSWGAVRNTPGVTGFVGATSRPSPLSIDDVLKFLLPKTEPAKKDAAKPGAA 262
Query: 121 ---------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL +
Sbjct: 263 ATPGKAAVEVDFEVGESVTVMDGPFATLPATINEVNVDAQKLKVLVSIFGRETPVELGFG 322
Query: 172 QVEKI 176
QV KI
Sbjct: 323 QVSKI 327
>gi|226309792|ref|YP_002769686.1| transcription antitermination protein [Brevibacillus brevis NBRC
100599]
gi|226092740|dbj|BAH41182.1| transcription antitermination protein [Brevibacillus brevis NBRC
100599]
Length = 178
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ RL G++ + + +P+E V + G+K ++
Sbjct: 1 MEKAWYVLHTYSGYENKVKTNLEKRLESMGMEDKIFRVLVPTEEEVETKDGKKRTVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+ + E + I+ Q+ ++ P
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALRPEEADTILKQM--GIEIP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F + + V V+DGPF++ G + + ++ +V V V IFGR TPVEL + QV+++
Sbjct: 119 KIRVDFALRDMVRVTDGPFSNRTGEIIEIYPDRQKVRVLVDIFGRETPVELDFTQVQQL 177
>gi|330444705|ref|YP_004377691.1| transcription termination/antitermination factor NusG
[Chlamydophila pecorum E58]
gi|328807815|gb|AEB41988.1| transcription termination/antitermination factor NusG
[Chlamydophila pecorum E58]
Length = 182
Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMAEFIQEIILPSENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD + +K T V+ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLVKMHLTDDSWLYVKSTAGVVEFLG-GAKPVALSEDEVRDILTDMEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|113953085|ref|YP_731916.1| transcription antitermination protein NusG [Synechococcus sp.
CC9311]
gi|113880436|gb|ABI45394.1| transcription termination/antitermination factor NusG
[Synechococcus sp. CC9311]
Length = 192
Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V V+K G + ++E + FP
Sbjct: 9 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ E++ I +
Sbjct: 69 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKR-- 126
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 127 AAEKKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 186
Query: 172 QVEK 175
Q+ K
Sbjct: 187 QISK 190
>gi|46200039|ref|YP_005706.1| transcription factor [Thermus thermophilus HB27]
gi|55980217|ref|YP_143514.1| transcription antitermination protein NusG [Thermus thermophilus
HB8]
gi|548398|sp|P35872|NUSG_THET8 RecName: Full=Transcription antitermination protein nusG
gi|348515|pir||A45281 transcription factor NusG - Thermus aquaticus
gi|46197667|gb|AAS82079.1| transcription factor [Thermus thermophilus HB27]
gi|55771630|dbj|BAD70071.1| transcription antitermination protein NusG [Thermus thermophilus
HB8]
Length = 184
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+G +K ++
Sbjct: 1 MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 60
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 61 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 180
Query: 173 VEK 175
V K
Sbjct: 181 VVK 183
>gi|282857085|ref|ZP_06266331.1| transcription termination/antitermination factor NusG
[Pyramidobacter piscolens W5455]
gi|282585020|gb|EFB90342.1| transcription termination/antitermination factor NusG
[Pyramidobacter piscolens W5455]
Length = 181
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ VQ YS E K ++ R++ G+++ + + +P+E V V+ G+ + FP Y
Sbjct: 8 WFTVQTYSGYENKVKANLDQRIASMGMENKIFRVLVPTEERVVVKDGKSRRISHKLFPSY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPVSSVF 122
VL++ +M ++ ++ ++ TP V GF+G G +P P+TDSEI+ I+ ++ + A P +
Sbjct: 68 VLVEMIMDEQSWYVVRHTPGVTGFIGAGNHPLPITDSEIDEILVKIGEKEAAPAPKVEID 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+RV V+ GP G V + K +V +FG T +E+ Y ++EK+
Sbjct: 128 CEIGDRVRVATGPLTGMEGPVTEISPGKGKVKFSANVFGHDTEIEMDYAELEKL 181
>gi|70727472|ref|YP_254388.1| transcription antitermination protein [Staphylococcus haemolyticus
JCSC1435]
gi|68448198|dbj|BAE05782.1| transcription antitermination protein [Staphylococcus haemolyticus
JCSC1435]
Length = 182
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V YS E K +++ R+ + + + IP E V+ G+ ++ FPGY
Sbjct: 10 WYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQLKKTFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ V
Sbjct: 70 VLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQM--GLKEKTIDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 128 ELDVGEQVRIKSGPFANQVGEVQEIEPDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|237666465|ref|ZP_04526450.1| transcription termination/antitermination factor NusG [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|237657664|gb|EEP55219.1| transcription termination/antitermination factor NusG [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 182
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L+ L+ +I +P E V+ + G++ S ++ FPG
Sbjct: 15 RWYVVHTYSGYENKVKANLEKAIENRNLESLIQDIQVPMEEVIEEKDGKQKVSLKKKFPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P++D E+E + ++ PV +
Sbjct: 75 YVLVKMLMSDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM-----GVLEMPV-DIDL 128
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + EK ++ V +FGR T EL +NQVEK+V
Sbjct: 129 EVGESIKIISGPLRDSVATIQEIVLEKRKIKALVDMFGRETLAELDFNQVEKLV 182
>gi|297564023|ref|YP_003682996.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848472|gb|ADH70490.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 280
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ EK+ ++ R ++ + ++ +P V V+ G++ + PGY
Sbjct: 96 WYVVHTYAGYEKRVKANVESRTQSLNMEEYIFQVEVPEHEVTEVKSGKRQQVTEKVLPGY 155
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-----QVEAAVQRPVS 119
VL++ +TD+ + I++TP V GF+G P+P++ +E+ ++ + E A Q +
Sbjct: 156 VLVRMDLTDESWSAIRNTPGVTGFVGLSNKPAPLSLTEVAKLLAPEPEVEPEQAQQARTA 215
Query: 120 --------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V +EVGE V V +GPFA+ V ++ + ++ V V IFGR TPVEL++N
Sbjct: 216 GGVGEARMDVAYEVGESVTVMEGPFATLPATVSEINPDTQKLKVLVSIFGRETPVELSFN 275
Query: 172 QVEKI 176
QV KI
Sbjct: 276 QVAKI 280
>gi|294787327|ref|ZP_06752580.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens F0305]
gi|315227113|ref|ZP_07868900.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens DSM 10105]
gi|294484683|gb|EFG32318.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens F0305]
gi|315119563|gb|EFT82696.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens DSM 10105]
Length = 305
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 104/187 (55%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPG 63
WY++ YS EK+ ++ R+ GL+ V ++ IP E V KG+K+ + R PG
Sbjct: 121 WYVLHTYSGYEKRVKTNVESRVQNFGLEDKVFQVEIPMEEVEKHTEKGKKIITRVRI-PG 179
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQV 110
YVLI+ D I++T V GF+GT P++ E+ +M +Q
Sbjct: 180 YVLIRMWDDDDARRIIRETEGVTGFVGTNREAVPLSRQEVVDMMAPMIRSQALKEAGDQP 239
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+AA QR V V F +GE V V+DGPFA+ G+V ++ E ++ V V IFGR TPVEL +
Sbjct: 240 KAARQRKVE-VVFSLGETVTVTDGPFATMTGVVSDLQPEAQKLTVLVNIFGRDTPVELGF 298
Query: 171 NQVEKIV 177
+QVEKI+
Sbjct: 299 SQVEKII 305
>gi|223982628|ref|ZP_03632862.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM
12042]
gi|223965408|gb|EEF69686.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM
12042]
Length = 182
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + E++ R+ G+ + I + E + + G+KV FPGY
Sbjct: 8 WYVVNTYAGHENRVKENLQRRVDTMGISDYLFRILVAEEPEIEYKNGKKVEKMHNLFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
+ ++ +MTD+ ++ +++TP V GF+G+ G P PV+ EI+ I+ ++ + ++ SV
Sbjct: 68 LFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSPEEIDSILRRIGMSDRK--VSV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+RV + GPF+ G + ++++ V ++FGR TP E+AYN +EK+
Sbjct: 126 NFTTGDRVKILTGPFSGIEGSIDAMNDDTQTATVLCILFGRETPTEIAYNDLEKV 180
>gi|167756033|ref|ZP_02428160.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402]
gi|167704025|gb|EDS18604.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402]
Length = 185
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+N + FPG
Sbjct: 10 QWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++T V GF+G+ G P P+ SE++ I+ ++ +
Sbjct: 70 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKM--GLSTSSIE 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + G+ V V GPFA +G V+++D EK V V G +TP+E+ Q+EK
Sbjct: 128 VDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 182
>gi|227552592|ref|ZP_03982641.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330]
gi|257880337|ref|ZP_05659990.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933]
gi|257882191|ref|ZP_05661844.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502]
gi|257885384|ref|ZP_05665037.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501]
gi|257888179|ref|ZP_05667832.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733]
gi|257890996|ref|ZP_05670649.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410]
gi|257894250|ref|ZP_05673903.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408]
gi|257896930|ref|ZP_05676583.1| transcription antiterminator NusG [Enterococcus faecium Com12]
gi|257899609|ref|ZP_05679262.1| transcription antiterminator NusG [Enterococcus faecium Com15]
gi|258614712|ref|ZP_05712482.1| transcription antitermination protein NusG [Enterococcus faecium
DO]
gi|260562359|ref|ZP_05832873.1| transcription antitermination protein NusG [Enterococcus faecium
C68]
gi|261209266|ref|ZP_05923658.1| transcription antitermination protein NusG [Enterococcus faecium TC
6]
gi|293379127|ref|ZP_06625278.1| transcription termination/antitermination factor NusG [Enterococcus
faecium PC4.1]
gi|293557114|ref|ZP_06675669.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1039]
gi|293559848|ref|ZP_06676362.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1162]
gi|293568368|ref|ZP_06679689.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1071]
gi|293571552|ref|ZP_06682574.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E980]
gi|294616181|ref|ZP_06695978.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1636]
gi|294618923|ref|ZP_06698430.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1679]
gi|294623149|ref|ZP_06702035.1| transcription termination/antitermination factor NusG [Enterococcus
faecium U0317]
gi|314937977|ref|ZP_07845288.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a04]
gi|314944027|ref|ZP_07850712.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133C]
gi|314948417|ref|ZP_07851805.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0082]
gi|314951395|ref|ZP_07854447.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133A]
gi|314991324|ref|ZP_07856803.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133B]
gi|314995338|ref|ZP_07860444.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a01]
gi|227178218|gb|EEI59190.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330]
gi|257814565|gb|EEV43323.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933]
gi|257817849|gb|EEV45177.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502]
gi|257821240|gb|EEV48370.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501]
gi|257824233|gb|EEV51165.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733]
gi|257827356|gb|EEV53982.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410]
gi|257830629|gb|EEV57236.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408]
gi|257833495|gb|EEV59916.1| transcription antiterminator NusG [Enterococcus faecium Com12]
gi|257837521|gb|EEV62595.1| transcription antiterminator NusG [Enterococcus faecium Com15]
gi|260073283|gb|EEW61624.1| transcription antitermination protein NusG [Enterococcus faecium
C68]
gi|260076812|gb|EEW64547.1| transcription antitermination protein NusG [Enterococcus faecium TC
6]
gi|291588889|gb|EFF20716.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1071]
gi|291590936|gb|EFF22648.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1636]
gi|291594839|gb|EFF26209.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1679]
gi|291597518|gb|EFF28683.1| transcription termination/antitermination factor NusG [Enterococcus
faecium U0317]
gi|291600735|gb|EFF31032.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1039]
gi|291606184|gb|EFF35604.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1162]
gi|291608358|gb|EFF37658.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E980]
gi|292642268|gb|EFF60427.1| transcription termination/antitermination factor NusG [Enterococcus
faecium PC4.1]
gi|313590431|gb|EFR69276.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a01]
gi|313594097|gb|EFR72942.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133B]
gi|313596453|gb|EFR75298.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133A]
gi|313597372|gb|EFR76217.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133C]
gi|313642652|gb|EFS07232.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a04]
gi|313645142|gb|EFS09722.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0082]
Length = 181
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +I R + + + +P E+ V+ G++ + FPGY
Sbjct: 8 WYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ + +
Sbjct: 68 VLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQ--NDL 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V + +G FA G V VD EK ++ V + +FGR T EL ++QV+KI
Sbjct: 126 EVEVGEVVKIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 180
>gi|281422263|ref|ZP_06253262.1| transcription termination/antitermination factor NusG [Prevotella
copri DSM 18205]
gi|281403768|gb|EFB34448.1| transcription termination/antitermination factor NusG [Prevotella
copri DSM 18205]
Length = 180
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I + + L V+++ IP E+ +VR G++V E+ P
Sbjct: 7 KWYVLKAVSGKEAKVKEYIEAEMKHNDLLAANVSQVLIPVEKHATVRNGKRVVKEKVSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++A + V HT++ P V+GFLG + P+PV +I ++ E
Sbjct: 67 GYVFVEAKLKGDVAHTLRFLPNVLGFLGGLDEPTPVPQRDINRMLGSAEETEFEENLDCP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V + V V +GPF+ F+GIV+ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YLVNDTVKVMEGPFSGFSGIVEEVNAEKHKLKVTVKIFGRKTPLELGFMQVEK 179
>gi|258513627|ref|YP_003189849.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
gi|257777332|gb|ACV61226.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 175
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++
Sbjct: 1 MDKQWYVVHTYSGYENKVKANLEKRIESMNMEDKIFRILVPMEDEVEIKNGKKKISKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ D+E I+ Q+ ++ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSKPIPLNDAEAAQIIKQM--GLEEPRAR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE + V GPF F G ++ + +K +V V + +FGR TPVEL + Q+ ++
Sbjct: 119 YDYNTGEIIRVISGPFEGFEGHIEELLLDKEKVRVMISMFGRETPVELDFTQIARL 174
>gi|228989305|ref|ZP_04149296.1| Transcription antitermination protein nusG [Bacillus pseudomycoides
DSM 12442]
gi|229083416|ref|ZP_04215764.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-44]
gi|228699849|gb|EEL52486.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-44]
gi|228770383|gb|EEM18956.1| Transcription antitermination protein nusG [Bacillus pseudomycoides
DSM 12442]
Length = 177
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177
>gi|237734019|ref|ZP_04564500.1| transcription antitermination protein nusG [Mollicutes bacterium
D7]
gi|229382845|gb|EEO32936.1| transcription antitermination protein nusG [Coprobacillus sp. D7]
Length = 182
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+N + FPG
Sbjct: 7 QWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++T V GF+G+ G P P+ SE++ I+ ++ +
Sbjct: 67 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKM--GLSTSSIE 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + G+ V V GPFA +G V+++D EK V V G +TP+E+ Q+EK
Sbjct: 125 VDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 179
>gi|457386|gb|AAA27500.1| transcription factor [Thermus thermophilus]
Length = 244
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+G +K ++
Sbjct: 61 MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 120
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 121 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 180
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++Q
Sbjct: 181 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 240
Query: 173 VEK 175
V K
Sbjct: 241 VVK 243
>gi|153816492|ref|ZP_01969160.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756]
gi|317500772|ref|ZP_07958989.1| transcription antitermination protein nusG [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331089751|ref|ZP_08338645.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 3_1_46FAA]
gi|145846188|gb|EDK23106.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756]
gi|316897865|gb|EFV19919.1| transcription antitermination protein nusG [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330403634|gb|EGG83189.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 3_1_46FAA]
Length = 172
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P E +R G + +R+ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMEEATELRNGVQKAVQRKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I VM D ++ +++T V GF+G G P P+ + E+E++ +QR V F
Sbjct: 65 YVMIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEHEMENL------GIQRDNVIVNF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V G + G V++++E+K + + V +FGR TPVEL++++V+K+
Sbjct: 119 GVGDMVVVLSGAWEGTVGTVQSMNEQKKSLSINVELFGRDTPVELSFSEVKKM 171
>gi|237802743|ref|YP_002887937.1| transcription antitermination protein NusG [Chlamydia trachomatis
B/Jali20/OT]
gi|231273977|emb|CAX10769.1| transcription antitermination protein [Chlamydia trachomatis
B/Jali20/OT]
Length = 182
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGG-APVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G++ V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVLSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|319443086|ref|ZP_07992242.1| transcription antitermination protein NusG [Corynebacterium
variabile DSM 44702]
Length = 285
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E V V+ G+K +++ PGY
Sbjct: 86 WYIIQCYSGYENKVKTNLEMRAQTLGVDQQIHEVVVPIEEVTQVKDGKKKIVKQKLLPGY 145
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
VL++ + D + I+DTP V F+G P+PV E+ + E A
Sbjct: 146 VLVRVELDDPSWSVIRDTPGVTSFVGNAGEPTPVKIREVAKFLLPPETATVPADAEGADS 205
Query: 114 -----------VQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
P ++ V +EVGE V V GPFAS + + +D S++ V
Sbjct: 206 ASGVDVSATGVAMAPTANSNQVEVDYEVGESVTVLSGPFASVSATISEIDAANSKLKALV 265
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 266 SIFGRETPVELEFDQVEKL 284
>gi|311744840|ref|ZP_07718636.1| transcription termination/antitermination factor NusG
[Aeromicrobium marinum DSM 15272]
gi|311311957|gb|EFQ81878.1| transcription termination/antitermination factor NusG
[Aeromicrobium marinum DSM 15272]
Length = 251
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS EK+ ++ R++ + + E+ +P+E V V+ G++ +R PGY
Sbjct: 64 WYVIHTYSGMEKRVKANLENRITSLNAEDFIFEVVVPTEEVAEVKNGQRKLVKRTVLPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G P P++ +E+E ++
Sbjct: 124 VLVRMDLTDESWGVVRHTPSVTGFVGNAHQPVPLSLAEVEQMLAPAVEAEVAATAAAESP 183
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A V F G+ V V DGPFA+ + + ++ + RV V IFGR TPVEL
Sbjct: 184 DSQPAKTAKVEFADFSAGDSVMVVDGPFATLHATITEINVDSQRVKALVEIFGRETPVEL 243
Query: 169 AYNQVEKI 176
+++Q++K+
Sbjct: 244 SFSQIQKV 251
>gi|152973943|ref|YP_001373460.1| transcription antitermination protein NusG [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022695|gb|ABS20465.1| NusG antitermination factor [Bacillus cytotoxicus NVH 391-98]
Length = 177
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177
>gi|119714942|ref|YP_921907.1| transcription termination/antitermination factor NusG [Nocardioides
sp. JS614]
gi|119535603|gb|ABL80220.1| transcription antitermination protein nusG [Nocardioides sp. JS614]
Length = 317
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 104/191 (54%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E + ++ R+ ++ + EI +P+E V ++ G++ R PGY
Sbjct: 127 WFVVHTYSGMENRVKSNLENRIISLNMEDYIHEIVVPTEEVAEIKNGQRKMVRRTVLPGY 186
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
VL++ +TD+ + ++ TP V GF+G P P++ SE+E+++
Sbjct: 187 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMSEVENMLAPAVVARAEAEAVAAGA 246
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+ AA ++PV F+V + V V DGPFA+ + + ++ E RV V IFGR TP
Sbjct: 247 PASSGGAAAKKPVEVADFDVSDSVMVVDGPFATLHATITEINAEAQRVKALVEIFGRETP 306
Query: 166 VELAYNQVEKI 176
VEL+++Q++++
Sbjct: 307 VELSFSQIQRV 317
>gi|188589977|ref|YP_001919660.1| transcription antitermination protein NusG [Clostridium botulinum
E3 str. Alaska E43]
gi|251779965|ref|ZP_04822885.1| transcription termination/antitermination factor NusG [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188500258|gb|ACD53394.1| transcription termination/antitermination factor NusG [Clostridium
botulinum E3 str. Alaska E43]
gi|243084280|gb|EES50170.1| transcription termination/antitermination factor NusG [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 173
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L+ L+ ++ +P E VV + G++ S ++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVVEEKDGKQKVSLKKKFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK +MTD+ ++ +++T V GF+G G P P++D E+E + ++ PV +
Sbjct: 66 YVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM-----GVLEMPV-EIDL 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + +K ++ V +FGR T EL +NQVEK+V
Sbjct: 120 EVGESIKIISGPLRDSVAKIQEIILDKKKIKALVDMFGRETLAELDFNQVEKLV 173
>gi|116071969|ref|ZP_01469237.1| transcription antitermination protein NusG [Synechococcus sp.
BL107]
gi|116065592|gb|EAU71350.1| transcription antitermination protein NusG [Synechococcus sp.
BL107]
Length = 222
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP + ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|78185724|ref|YP_378158.1| transcription antitermination protein NusG [Synechococcus sp.
CC9902]
gi|78170018|gb|ABB27115.1| transcription antitermination protein nusG [Synechococcus sp.
CC9902]
Length = 222
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP + ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|257054435|ref|YP_003132267.1| transcription antitermination protein nusG [Saccharomonospora
viridis DSM 43017]
gi|256584307|gb|ACU95440.1| transcription antitermination protein nusG [Saccharomonospora
viridis DSM 43017]
Length = 267
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 15/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + +I R ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 81 WYVVHSYAGYENRVKSNIETRRQTLDVEDYIFQVEVPTEEVTEIKNGQRKIVQRKVLPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
+L++ M D + +++TP V GF+G PSP++ E+ + + E A
Sbjct: 141 ILVRMEMNDASWSAVRNTPGVTGFVGATSRPSPLSLDEVVKFLAPKVEKAAPAKAKGEPA 200
Query: 114 VQRPVSS----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ V++ V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+
Sbjct: 201 AEEQVAAGPVEVDFEVGESVTVMDGPFATLPATISEVNVDAQKLKVLVSIFGRETPVELS 260
Query: 170 YNQVEKI 176
+NQV KI
Sbjct: 261 FNQVSKI 267
>gi|72163058|ref|YP_290715.1| transcription antitermination protein NusG [Thermobifida fusca YX]
gi|71916790|gb|AAZ56692.1| transcription antitermination protein nusG [Thermobifida fusca YX]
Length = 250
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + ++ R ++ + ++ +P++ V V+ G++ + PGY
Sbjct: 72 WYVVHTYAGYENRVKANLENRTQSLNMEDYIFQVEVPTQEVTEVKSGKRQQVTEKVLPGY 131
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------NQVEAAVQRP 117
VL++ +TD+ + ++ TP V GF+G P P++ E+ ++ + P
Sbjct: 132 VLVRMELTDESWAAVRHTPGVTGFVGLSNRPVPLSLDEVAELLAPEPETEEEQAKKEAEP 191
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+GE V V DGPFA+ V V+ + ++ V V IFGR TPVEL +NQV KI
Sbjct: 192 RGEVEYEIGESVTVMDGPFATLPATVSEVNPDTQKLKVLVSIFGRETPVELGFNQVSKI 250
>gi|29377206|ref|NP_816360.1| transcription antitermination protein NusG [Enterococcus faecalis
V583]
gi|227554214|ref|ZP_03984261.1| transcription antitermination protein NusG [Enterococcus faecalis
HH22]
gi|229544889|ref|ZP_04433614.1| transcription antitermination protein NusG [Enterococcus faecalis
TX1322]
gi|229549155|ref|ZP_04437880.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 29200]
gi|256854027|ref|ZP_05559392.1| transcription antitermination protein NusG [Enterococcus faecalis
T8]
gi|293384585|ref|ZP_06630451.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis R712]
gi|293386814|ref|ZP_06631385.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis S613]
gi|294779909|ref|ZP_06745291.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis PC1.1]
gi|300860945|ref|ZP_07107032.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TUSoD Ef11]
gi|307269242|ref|ZP_07550596.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4248]
gi|307271780|ref|ZP_07553051.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0855]
gi|307276965|ref|ZP_07558075.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2134]
gi|307278724|ref|ZP_07559791.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0860]
gi|307288652|ref|ZP_07568633.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0109]
gi|307290267|ref|ZP_07570183.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0411]
gi|312900090|ref|ZP_07759406.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0470]
gi|312902553|ref|ZP_07761759.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0635]
gi|312906411|ref|ZP_07765419.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 512]
gi|312951903|ref|ZP_07770791.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0102]
gi|312979430|ref|ZP_07791118.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 516]
gi|29344672|gb|AAO82430.1| transcription antitermination protein NusG [Enterococcus faecalis
V583]
gi|227176661|gb|EEI57633.1| transcription antitermination protein NusG [Enterococcus faecalis
HH22]
gi|229305709|gb|EEN71705.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 29200]
gi|229309990|gb|EEN75977.1| transcription antitermination protein NusG [Enterococcus faecalis
TX1322]
gi|256710970|gb|EEU26013.1| transcription antitermination protein NusG [Enterococcus faecalis
T8]
gi|291078131|gb|EFE15495.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis R712]
gi|291083817|gb|EFE20780.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis S613]
gi|294453021|gb|EFG21441.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis PC1.1]
gi|295113671|emb|CBL32308.1| transcription antitermination protein nusG [Enterococcus sp. 7L76]
gi|300849984|gb|EFK77734.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TUSoD Ef11]
gi|306498688|gb|EFM68189.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0411]
gi|306500406|gb|EFM69742.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0109]
gi|306504585|gb|EFM73788.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0860]
gi|306506388|gb|EFM75548.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2134]
gi|306511658|gb|EFM80657.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0855]
gi|306514461|gb|EFM83022.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4248]
gi|310627565|gb|EFQ10848.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 512]
gi|310630092|gb|EFQ13375.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0102]
gi|310634223|gb|EFQ17506.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0635]
gi|311287801|gb|EFQ66357.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 516]
gi|311292725|gb|EFQ71281.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0470]
gi|315025505|gb|EFT37437.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2137]
gi|315030451|gb|EFT42383.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4000]
gi|315032577|gb|EFT44509.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0017]
gi|315035100|gb|EFT47032.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0027]
gi|315143881|gb|EFT87897.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2141]
gi|315148690|gb|EFT92706.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4244]
gi|315151764|gb|EFT95780.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0012]
gi|315154307|gb|EFT98323.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0031]
gi|315155591|gb|EFT99607.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0043]
gi|315159600|gb|EFU03617.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0312]
gi|315162108|gb|EFU06125.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0645]
gi|315165297|gb|EFU09314.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1302]
gi|315168710|gb|EFU12727.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1341]
gi|315170473|gb|EFU14490.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1342]
gi|315174937|gb|EFU18954.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1346]
gi|315573767|gb|EFU85958.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0309B]
gi|315579638|gb|EFU91829.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0630]
gi|315580281|gb|EFU92472.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0309A]
gi|323481651|gb|ADX81090.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis 62]
gi|327535945|gb|AEA94779.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis OG1RF]
gi|329578047|gb|EGG59461.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1467]
Length = 181
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +I R G+ + + +P E V+ G++ + FPGY
Sbjct: 8 WYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ S +
Sbjct: 68 VLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ--SDL 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 126 EVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180
>gi|225631286|ref|ZP_03787965.1| Transcription antiterminator [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591020|gb|EEH12223.1| Transcription antiterminator [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 278
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D EI + N + A +
Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276
>gi|126433559|ref|YP_001069250.1| transcription antitermination protein NusG [Mycobacterium sp. JLS]
gi|126233359|gb|ABN96759.1| transcription antitermination protein nusG [Mycobacterium sp. JLS]
Length = 271
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 81 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 141 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 200
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 201 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 260
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 261 VELTFNQVSKI 271
>gi|108797896|ref|YP_638093.1| transcription antitermination protein NusG [Mycobacterium sp. MCS]
gi|119866991|ref|YP_936943.1| transcription antitermination protein NusG [Mycobacterium sp. KMS]
gi|108768315|gb|ABG07037.1| transcription antitermination protein nusG [Mycobacterium sp. MCS]
gi|119693080|gb|ABL90153.1| transcription antitermination protein nusG [Mycobacterium sp. KMS]
Length = 270
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 80 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 139
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 140 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 199
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 200 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 259
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 260 VELTFNQVSKI 270
>gi|240169413|ref|ZP_04748072.1| transcription antitermination protein NusG [Mycobacterium kansasii
ATCC 12478]
Length = 238
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS ++ ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGAAKKAAKGAASTA 168
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 169 AVAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228
Query: 167 ELAYNQVEKI 176
EL ++QV KI
Sbjct: 229 ELTFSQVSKI 238
>gi|269121551|ref|YP_003309728.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386]
gi|268615429|gb|ACZ09797.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386]
Length = 198
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WYI+ YS EKK + R+ L V I +P E ++ ++G+ V R+
Sbjct: 8 LEKKWYIIHTYSGYEKKVKADLEKRVVTLNLTDRVFRILVPEEEIMEEKRGKMVKVPRKL 67
Query: 61 FPGYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
FPGYV+++ + + ++ I++T V GF+G G +P P+ D E + ++
Sbjct: 68 FPGYVMVEMLSKKEENDLGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLADDEAKSLL 127
Query: 108 NQV--EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+++ + + P + + EVGE+V V +G F + + VD E RV V V +FGR+TP
Sbjct: 128 SKIGLDESASAPKARLDLEVGEKVIVKNGAFENQEAEIAEVDHEHGRVKVMVEVFGRMTP 187
Query: 166 VELAYNQVEKI 176
VEL Y++V KI
Sbjct: 188 VELEYHEVRKI 198
>gi|227519486|ref|ZP_03949535.1| transcription antitermination protein NusG [Enterococcus faecalis
TX0104]
gi|227073098|gb|EEI11061.1| transcription antitermination protein NusG [Enterococcus faecalis
TX0104]
Length = 181
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +I R G+ + + +P E V+ G++ + FPGY
Sbjct: 8 WYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ S +
Sbjct: 68 VLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ--SDL 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 126 EVTLGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180
>gi|124024464|ref|YP_001018771.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9303]
gi|123964750|gb|ABM79506.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9303]
Length = 241
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY +QV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 58 RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 117
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ E++ I +
Sbjct: 118 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKR-- 175
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ + V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 176 AAEKKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 235
Query: 172 QVEK 175
Q+ K
Sbjct: 236 QINK 239
>gi|116074059|ref|ZP_01471321.1| transcription antitermination protein NusG [Synechococcus sp.
RS9916]
gi|116069364|gb|EAU75116.1| transcription antitermination protein NusG [Synechococcus sp.
RS9916]
Length = 220
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R + + EI IP V ++K G + ++E + FP
Sbjct: 37 RWYAVQVASSCEKKVKATLEQRAVTLAVSDRILEIEIPETPAVKIKKDGSRQSTEEKVFP 96
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 97 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 154
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 155 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 214
Query: 172 QVEK 175
QV K
Sbjct: 215 QVSK 218
>gi|203284306|ref|YP_002222046.1| transcription antitermination factor [Borrelia duttonii Ly]
gi|203287842|ref|YP_002222857.1| transcription antitermination factor [Borrelia recurrentis A1]
gi|201083749|gb|ACH93340.1| transcription antitermination factor [Borrelia duttonii Ly]
gi|201085062|gb|ACH94636.1| transcription antitermination factor [Borrelia recurrentis A1]
Length = 184
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 12/186 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q +S EKK + I +S + V ++ P ERV +R G+K ER+
Sbjct: 1 MSRAWYVLQTFSQYEKKIEQEIKLLISEGVFGNNVLDVKAPIERVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH-TIKDTPKVIG---FLGTG--ENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ ++D+ + T+ + K+ G F+GT + P P++D E++ + + A
Sbjct: 61 WPGYILIELDLSDQEWKSTVANIIKISGVVNFVGTTKEQKPLPISDEEVKSVF--MLAGE 118
Query: 115 QRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ S+F FE GERV + GPF SF G++ ++D EK ++ V V IFGR TPVE+ +
Sbjct: 119 IKADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDF 178
Query: 171 NQVEKI 176
+EKI
Sbjct: 179 QHIEKI 184
>gi|39938741|ref|NP_950507.1| transcription antiterminator [Onion yellows phytoplasma OY-M]
gi|39721850|dbj|BAD04340.1| transcription antiterminator [Onion yellows phytoplasma OY-M]
Length = 204
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 107/177 (60%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P
Sbjct: 30 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD+ + +++TP++ GFLG+ G P P++++EI ++ ++ + +P
Sbjct: 90 GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKM-GIINKPDY 148
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G++V + G F+ G V ++D+++ ++ VEV +FGR TPVE+++N ++I
Sbjct: 149 KNF--IGKKVEIISGSFSGQIGQVSSIDDDREKMTVEVDLFGRATPVEISFNDFKEI 203
>gi|260435130|ref|ZP_05789100.1| transcription termination/antitermination factor NusG
[Synechococcus sp. WH 8109]
gi|260413004|gb|EEX06300.1| transcription termination/antitermination factor NusG
[Synechococcus sp. WH 8109]
Length = 222
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|78213980|ref|YP_382759.1| transcription antitermination protein NusG [Synechococcus sp.
CC9605]
gi|78198439|gb|ABB36204.1| NusG antitermination factor [Synechococcus sp. CC9605]
Length = 222
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|266621462|ref|ZP_06114397.1| transcription termination/antitermination factor NusG [Clostridium
hathewayi DSM 13479]
gi|288866903|gb|EFC99201.1| transcription termination/antitermination factor NusG [Clostridium
hathewayi DSM 13479]
Length = 171
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K I + L + E+++P E V+ ++ G + ++++ FPG
Sbjct: 5 HWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+T+ E+ ++ + E + V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMANLGFRNEEVI------VDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V G + G +K+++E K + + V +FGR TPVEL +N+++K+
Sbjct: 119 EVGDTVVVISGAWKDTVGAIKSINEGKKSITINVEMFGRETPVELNFNEIKKM 171
>gi|81429286|ref|YP_396287.1| transcription antitermination protein NusG [Lactobacillus sakei
subsp. sakei 23K]
gi|78610929|emb|CAI55981.1| Transcription antitermination protein NusG [Lactobacillus sakei
subsp. sakei 23K]
Length = 182
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ R G+++ V + +P E ++ G+ ++ FPGY
Sbjct: 9 WYVLHTYSGYENKVKANLESRAQSMGMENNVFRVVVPEEEEHEIKNGKDKVDMKKTFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VM+D+ + +++TP V GF+G+ G P+P+ D EI I+ Q+ + + V
Sbjct: 69 VLVEMVMSDEAWFVVRNTPGVTGFVGSHGAGSKPAPLLDDEISQILRQLGMSTRHL--DV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F+VGE V + DG F+ G + VD+EK ++ V + +FGR T EL Y+QV+++V
Sbjct: 127 EFKVGESVKIVDGAFSGLVGQITEVDDEKMKLKVNIDMFGRETATELDYDQVDELV 182
>gi|295100380|emb|CBK97925.1| transcription antitermination protein nusG [Faecalibacterium
prausnitzii L2-6]
Length = 176
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K + + L L+ +I +P+E V ++ G++ E + FPGY
Sbjct: 10 WYVVHTYSGYENKVATDLQTMVENRRLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K VM D ++ +++T GF+G P P+T E+E + VE A P+ +V F
Sbjct: 70 VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM--GVEKAA--PL-TVDFN 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174
>gi|309792762|ref|ZP_07687207.1| transcription termination/antitermination factor NusG
[Oscillochloris trichoides DG6]
gi|308225214|gb|EFO78997.1| transcription termination/antitermination factor NusG
[Oscillochloris trichoides DG6]
Length = 159
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 20 ESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTI 79
+++ R+ + + + + +P+E + ++ G++ ++ +PGYVL++ MTD ++ +
Sbjct: 3 QNLEHRIDSMEMRNQIFRVIVPTEEEIEIKNGQRRTVNKKIYPGYVLVQMHMTDDSWYVV 62
Query: 80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139
++TP V F+G G P+P+ D E++ I+ Q+E + P V ++ G+ V ++DGPF F
Sbjct: 63 RNTPGVTSFVGHGNRPTPLEDDEVKTILKQMEG--EAPKVRVSYQKGQAVKITDGPFTDF 120
Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GIV +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 121 EGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 158
>gi|33864351|ref|NP_895911.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9313]
gi|33641131|emb|CAE22261.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9313]
Length = 223
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY +QV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 40 RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 99
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ E++ I +
Sbjct: 100 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKR-- 157
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ + V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++
Sbjct: 158 AAEKKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 217
Query: 172 QVEK 175
Q+ K
Sbjct: 218 QINK 221
>gi|166031509|ref|ZP_02234338.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC
27755]
gi|166028914|gb|EDR47671.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC
27755]
Length = 171
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKSVENRHLEDQILEVRVPLQDVVELKNGVQKVSQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+TD+E+ + +Q+ V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPL------GIQQDNIVVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V G +A G+++ ++ +K V + V +FGR TPVE+++ +++++
Sbjct: 119 EVGDTVQVVAGAWADTVGVIQAMNAQKQSVTINVELFGRETPVEISFAEIKRV 171
>gi|329943041|ref|ZP_08291815.1| transcription termination/antitermination factor NusG
[Chlamydophila psittaci Cal10]
gi|313848197|emb|CBY17198.1| putative transcription antitermination protein [Chlamydophila
psittaci RD1]
gi|325506733|gb|ADZ18371.1| transcription antitermination factor [Chlamydophila psittaci 6BC]
gi|328814588|gb|EGF84578.1| transcription termination/antitermination factor NusG
[Chlamydophila psittaci Cal10]
gi|328914875|gb|AEB55708.1| transcription termination/antitermination factor NusG
[Chlamydophila psittaci 6BC]
Length = 182
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLGGG-VPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
+VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|182412062|ref|YP_001817128.1| NusG antitermination factor [Opitutus terrae PB90-1]
gi|177839276|gb|ACB73528.1| NusG antitermination factor [Opitutus terrae PB90-1]
Length = 192
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 8/179 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ + S E K I LD + E+ +P+E V V+ G+K R+ +PG
Sbjct: 12 QWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYPG 71
Query: 64 YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
YV I+ + +K ++ +K+ VIGF+G G+ P+ + SEI+ I ++EAA +
Sbjct: 72 YVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG-GDRPAALRQSEIDEIRARIEAANGK 130
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V V + VGE V ++DG FAS G + +D E+ ++ V V IFGR TPVEL Y QV++
Sbjct: 131 EVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189
>gi|229015498|ref|ZP_04172496.1| Transcription antitermination protein nusG [Bacillus cereus AH1273]
gi|229021707|ref|ZP_04178289.1| Transcription antitermination protein nusG [Bacillus cereus AH1272]
gi|228739575|gb|EEL89989.1| Transcription antitermination protein nusG [Bacillus cereus AH1272]
gi|228745785|gb|EEL95789.1| Transcription antitermination protein nusG [Bacillus cereus AH1273]
Length = 177
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V +R G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMRNGKEKLMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|226305205|ref|YP_002765163.1| transcription antitermination protein NusG [Rhodococcus
erythropolis PR4]
gi|229490716|ref|ZP_04384554.1| transcription antitermination protein NusG [Rhodococcus
erythropolis SK121]
gi|226184320|dbj|BAH32424.1| transcription antitermination protein NusG [Rhodococcus
erythropolis PR4]
gi|229322536|gb|EEN88319.1| transcription antitermination protein NusG [Rhodococcus
erythropolis SK121]
Length = 278
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 88 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 147
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP+T +E+ +
Sbjct: 148 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLLPQQEQKKQQAAAAAVA 207
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+ +P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 208 AGEAPSESFGKPLIEVDFEVGESVTVMDGPFATLPASISEVNGEQQKLKVLVSIFGRETP 267
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 268 VELNFNQVAKI 278
>gi|255994046|ref|ZP_05427181.1| transcription termination/antitermination factor NusG [Eubacterium
saphenum ATCC 49989]
gi|255993714|gb|EEU03803.1| transcription termination/antitermination factor NusG [Eubacterium
saphenum ATCC 49989]
Length = 198
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E+K ++I + G+ L+ +I IP+E V ++ G++ + + + F G
Sbjct: 32 RWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFIG 91
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +T++ ++ +++T V GF+G G+ P P+T E+ + +++ + ++
Sbjct: 92 YILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEVRRL------GIEKVIVNLKI 145
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ + V +GPF NG V VDEE + ++ +FGR TPV+L Y Q++K+
Sbjct: 146 KPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDKL 198
>gi|282855233|ref|ZP_06264565.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J139]
gi|282581821|gb|EFB87206.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J139]
gi|314983092|gb|EFT27184.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA3]
gi|315090636|gb|EFT62612.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA4]
Length = 303
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAAVQR------ 116
YVL++ +TD + ++ TP V GF+G P P+T D I+ + V A V R
Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVIKMLTPSVLARVSRENADKA 236
Query: 117 -------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L
Sbjct: 237 PSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 297 FNQIEKI 303
>gi|306820720|ref|ZP_07454347.1| transcription termination/antitermination factor NusG [Eubacterium
yurii subsp. margaretiae ATCC 43715]
gi|304551219|gb|EFM39183.1| transcription termination/antitermination factor NusG [Eubacterium
yurii subsp. margaretiae ATCC 43715]
Length = 177
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K S+ + G+ + + IP E VV +KG + +R+ FPGY
Sbjct: 9 WYVVHTYSGYENKVKTSLEKTIENLGMQEYIQNVVIPEENVVENKKGIEKIRKRKIFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLIK V+TD ++ +++T V GF+G P P+TD E+ + + E V +V FE
Sbjct: 69 VLIKMVVTDDSWYLVRNTKGVTGFVGANSKPIPLTDEEVAKMRLEEEIY----VGNVNFE 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ + + GPF S + + E+KS V ++ +FG+ T +EL ++Q++KI
Sbjct: 125 EGDNIIILGGPFDSREAKIIKIMEDKSMVKAQMSMFGKETTIELGFSQIKKI 176
>gi|42519937|ref|NP_965852.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42409674|gb|AAS13786.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 196
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 18 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D EI + N + A +
Sbjct: 78 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETRKL 137
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 138 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 194
>gi|289551664|ref|YP_003472568.1| Transcription antitermination protein NusG [Staphylococcus
lugdunensis HKU09-01]
gi|315659123|ref|ZP_07911988.1| transcription termination/antitermination factor NusG
[Staphylococcus lugdunensis M23590]
gi|289181195|gb|ADC88440.1| Transcription antitermination protein NusG [Staphylococcus
lugdunensis HKU09-01]
gi|315495847|gb|EFU84177.1| transcription termination/antitermination factor NusG
[Staphylococcus lugdunensis M23590]
Length = 182
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V YS E K +++ R+ + + + IP E V+ G+ ++ FPGY
Sbjct: 10 WYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKVVKKTFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ +
Sbjct: 70 VLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQM--GLKEKTIDI 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE+V + GPF++ G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 128 ELEIGEQVRIKSGPFSNQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182
>gi|312897640|ref|ZP_07757057.1| transcription termination/antitermination factor NusG [Megasphaera
micronuciformis F0359]
gi|310621273|gb|EFQ04816.1| transcription termination/antitermination factor NusG [Megasphaera
micronuciformis F0359]
Length = 179
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS EKK +++ ++ GL++++ I +P E + V+ GRK R+ +PGY
Sbjct: 7 WYVIHTYSGYEKKVKDNLERKVRSMGLENVIERILVPEEDEIDVKDGRKRTVRRKIYPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEAAVQRPVSSVF 122
V ++ + D+ ++ +++TP V GF+G+ P P+ E+ I+ +E V RP SV
Sbjct: 67 VFVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLEPQEVRRILKSQGIEKEV-RPQISV- 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E+GE+V + GPF +F + ++ EK + + +FGR T VE+ Y+Q+EK
Sbjct: 125 -EIGEQVRIISGPFDNFYATITEINNEKGTLKGLIDMFGRETSVEVDYSQIEK 176
>gi|29840454|ref|NP_829560.1| transcription antitermination protein NusG [Chlamydophila caviae
GPIC]
gi|29834803|gb|AAP05438.1| transcription antitermination protein NusG [Chlamydophila caviae
GPIC]
Length = 182
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLGGG-VPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
+VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|167749970|ref|ZP_02422097.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702]
gi|167656991|gb|EDS01121.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702]
gi|291530535|emb|CBK96120.1| transcription antitermination protein nusG [Eubacterium siraeum
70/3]
gi|291557875|emb|CBL34992.1| transcription antitermination protein nusG [Eubacterium siraeum
V10Sc8a]
Length = 173
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E K +I + + L HL+ E+ +P+E VV G+ E + FP
Sbjct: 5 KWYILHTYSGYENKVAGNIMKVVENNNLHHLIEEVMVPTETVVEEHDGKTKTYESKLFPS 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K ++TD+ ++ ++T GF+G G P P+TD E++++ V V+ + F
Sbjct: 65 YVYVKMILTDESWYICRNTRGCTGFVGPGSKPIPLTDEEVKNL------GVTTKVAEISF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ + + G F G V ++DEE V V +FGR TP + + V+K+
Sbjct: 119 AVGDTIKIVSGSLEGFEGTVDSIDEENGTAQVTVSMFGRPTPATVEISAVQKV 171
>gi|319937663|ref|ZP_08012066.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1]
gi|319807098|gb|EFW03712.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1]
Length = 185
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K E++ R+ GL + I IP ++ G+K+N + FPG
Sbjct: 10 RWYVVNTYSGHENKVKENLEKRVESMGLQDCLFNIVIPEHVETEIKDGKKINKTKNMFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++T V GF+G+ G P P+ EI+ I+ ++ +Q
Sbjct: 70 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKHEIDPILKRM--GIQTTQLE 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ V V GPFA G V+++D EK V V G TP+E+ Q+EK+
Sbjct: 128 INYAEGDEVKVLSGPFAGKQGKVESIDREKEVATVLVDFLGNATPMEVELIQLEKV 183
>gi|187932833|ref|YP_001884461.1| transcription antitermination protein NusG [Clostridium botulinum B
str. Eklund 17B]
gi|187720986|gb|ACD22207.1| transcription termination/antitermination factor NusG [Clostridium
botulinum B str. Eklund 17B]
Length = 173
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L+ L+ ++ +P E V+ + G++ S ++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVIEEKDGKQKVSLKKKFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK +MTD+ ++ +++T V GF+G G P P++D E+E + ++ PV +
Sbjct: 66 YVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM-----GVLEMPV-EIDL 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + +K ++ V +FGR T EL +NQVEK+V
Sbjct: 120 EVGESIRIISGPLRDSVAKIQEIVLDKKKIKALVDMFGRETLAELDFNQVEKLV 173
>gi|308375217|ref|ZP_07443128.2| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu007]
gi|308376463|ref|ZP_07438920.2| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu008]
gi|308347108|gb|EFP35959.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu007]
gi|308351051|gb|EFP39902.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu008]
Length = 241
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 52 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 111
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS + ++ +
Sbjct: 112 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 171
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 172 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 231
Query: 167 ELAYNQVEKI 176
EL + QV KI
Sbjct: 232 ELTFGQVSKI 241
>gi|283798907|ref|ZP_06348060.1| transcription termination/antitermination factor NusG [Clostridium
sp. M62/1]
gi|291073370|gb|EFE10734.1| transcription termination/antitermination factor NusG [Clostridium
sp. M62/1]
gi|295092664|emb|CBK78771.1| transcription antitermination protein nusG [Clostridium cf.
saccharolyticum K10]
Length = 171
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K I + GL + E+++P + VV ++ G + ++ FPG
Sbjct: 5 NWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPMQDVVEIKNGAQKQVAKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+T+ E+ ++ + V V +
Sbjct: 65 YVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMANLGFKPAGVV------VDY 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V V G + G++K+++E K + + V +FGR TPVEL + +V+K+
Sbjct: 119 EIGDAVVVISGAWKDTVGVIKSINENKQTLEITVEMFGRETPVELNFTEVKKM 171
>gi|15607779|ref|NP_215153.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Rv]
gi|15840042|ref|NP_335079.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis CDC1551]
gi|31791823|ref|NP_854316.1| transcription antitermination protein NusG [Mycobacterium bovis
AF2122/97]
gi|121636560|ref|YP_976783.1| transcription antitermination protein NusG [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148660413|ref|YP_001281936.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Ra]
gi|148821843|ref|YP_001286597.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis F11]
gi|167969069|ref|ZP_02551346.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Ra]
gi|215402414|ref|ZP_03414595.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis 02_1987]
gi|215410186|ref|ZP_03418994.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis 94_M4241A]
gi|215429474|ref|ZP_03427393.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis EAS054]
gi|215444758|ref|ZP_03431510.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T85]
gi|218752287|ref|ZP_03531083.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis GM 1503]
gi|219556483|ref|ZP_03535559.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T17]
gi|224989032|ref|YP_002643719.1| transcription antitermination protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253797579|ref|YP_003030580.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 1435]
gi|254230970|ref|ZP_04924297.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis C]
gi|254363593|ref|ZP_04979639.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis str. Haarlem]
gi|254549599|ref|ZP_05140046.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260185520|ref|ZP_05762994.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis CPHL_A]
gi|260199646|ref|ZP_05767137.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T46]
gi|260203809|ref|ZP_05771300.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis K85]
gi|289442033|ref|ZP_06431777.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T46]
gi|289446196|ref|ZP_06435940.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis CPHL_A]
gi|289552893|ref|ZP_06442103.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 605]
gi|289568578|ref|ZP_06448805.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T17]
gi|289573243|ref|ZP_06453470.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis K85]
gi|289744357|ref|ZP_06503735.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 02_1987]
gi|289752683|ref|ZP_06512061.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis EAS054]
gi|289756723|ref|ZP_06516101.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T85]
gi|289760764|ref|ZP_06520142.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis GM 1503]
gi|294996157|ref|ZP_06801848.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis 210]
gi|297633137|ref|ZP_06950917.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis KZN 4207]
gi|297730117|ref|ZP_06959235.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis KZN R506]
gi|298524131|ref|ZP_07011540.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 94_M4241A]
gi|306774749|ref|ZP_07413086.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu001]
gi|306781520|ref|ZP_07419857.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu002]
gi|306783287|ref|ZP_07421609.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu003]
gi|306787656|ref|ZP_07425978.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu004]
gi|306794423|ref|ZP_07432725.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu005]
gi|306796392|ref|ZP_07434694.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu006]
gi|306966660|ref|ZP_07479321.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu009]
gi|306970853|ref|ZP_07483514.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu010]
gi|307078578|ref|ZP_07487748.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu011]
gi|307083142|ref|ZP_07492255.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu012]
gi|313657444|ref|ZP_07814324.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis KZN V2475]
gi|54037928|sp|P65590|NUSG_MYCBO RecName: Full=Transcription antitermination protein nusG
gi|54041678|sp|P65589|NUSG_MYCTU RecName: Full=Transcription antitermination protein nusG
gi|1877377|emb|CAB07098.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium
tuberculosis H37Rv]
gi|13880188|gb|AAK44893.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis CDC1551]
gi|31617410|emb|CAD93520.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium
bovis AF2122/97]
gi|121492207|emb|CAL70674.1| Probable transcription antitermination protein nusG [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124600029|gb|EAY59039.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis C]
gi|134149107|gb|EBA41152.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis str. Haarlem]
gi|148504565|gb|ABQ72374.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Ra]
gi|148720370|gb|ABR04995.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis F11]
gi|224772145|dbj|BAH24951.1| transcription antitermination protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253319082|gb|ACT23685.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 1435]
gi|289414952|gb|EFD12192.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T46]
gi|289419154|gb|EFD16355.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis CPHL_A]
gi|289437525|gb|EFD20018.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 605]
gi|289537674|gb|EFD42252.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis K85]
gi|289542332|gb|EFD45980.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T17]
gi|289684885|gb|EFD52373.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 02_1987]
gi|289693270|gb|EFD60699.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis EAS054]
gi|289708270|gb|EFD72286.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis GM 1503]
gi|289712287|gb|EFD76299.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T85]
gi|298493925|gb|EFI29219.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 94_M4241A]
gi|308216642|gb|EFO76041.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu001]
gi|308325691|gb|EFP14542.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu002]
gi|308331948|gb|EFP20799.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu003]
gi|308335733|gb|EFP24584.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu004]
gi|308337311|gb|EFP26162.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu005]
gi|308343169|gb|EFP32020.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu006]
gi|308355683|gb|EFP44534.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu009]
gi|308359638|gb|EFP48489.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu010]
gi|308363494|gb|EFP52345.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu011]
gi|308367148|gb|EFP55999.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu012]
gi|323720996|gb|EGB30061.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis CDC1551A]
gi|326905138|gb|EGE52071.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis W-148]
gi|328457360|gb|AEB02783.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 4207]
Length = 238
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ +TD + +++TP V GF+G PS + D ++ ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228
Query: 167 ELAYNQVEKI 176
EL + QV KI
Sbjct: 229 ELTFGQVSKI 238
>gi|58699178|ref|ZP_00373995.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58534308|gb|EAL58490.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 246
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 68 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 127
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I PK V GFL G P + D EI + N + A +
Sbjct: 128 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 187
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 188 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 244
>gi|225629888|ref|YP_002726679.1| Transcription antiterminator [Wolbachia sp. wRi]
gi|225591869|gb|ACN94888.1| Transcription antiterminator [Wolbachia sp. wRi]
Length = 278
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I PK V GFL G P + D EI + N + A +
Sbjct: 160 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276
>gi|296395107|ref|YP_003659991.1| NusG antitermination factor [Segniliparus rotundus DSM 44985]
gi|296182254|gb|ADG99160.1| NusG antitermination factor [Segniliparus rotundus DSM 44985]
Length = 258
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ R+ + + +I +P+E V V+ G++ R+ PG
Sbjct: 70 KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 129
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE-IEHIMNQVE----------- 111
Y+L++ + D+ + T+++TP V GF+GT P+P+ ++ ++ ++ + E
Sbjct: 130 YILVRMDLNDESWSTVRNTPGVTGFVGTSR-PTPLALNDVVKFLLPRQEPKKAAAAAKTK 188
Query: 112 -----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
AA V+ V ++VGE V V+DGPFA+ + ++ E+ ++ V V IFGR TPV
Sbjct: 189 QGDGFAAAIASVTEVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPV 248
Query: 167 ELAYNQVEKI 176
EL++NQV KI
Sbjct: 249 ELSFNQVTKI 258
>gi|33866874|ref|NP_898433.1| transcription antitermination protein NusG [Synechococcus sp. WH
8102]
gi|33639475|emb|CAE08859.1| transcription antitermination protein, NusG [Synechococcus sp. WH
8102]
Length = 222
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + EI IP V V+K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAITLGVSKRILEIEIPQTPAVKVKKDGSRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G + P P++ +E++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRAAGKARGHIKPRPLSRAEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|313835994|gb|EFS73708.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL037PA2]
gi|314929670|gb|EFS93501.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL044PA1]
gi|314970507|gb|EFT14605.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL037PA3]
gi|328906260|gb|EGG26035.1| transcription antitermination protein NusG [Propionibacterium sp.
P08]
Length = 300
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 114 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 173
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-------QVEAAVQR 116
YVL++ +TD + ++ TP V GF+G P P+T E+ ++ E A +
Sbjct: 174 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVIAKASRENADKA 233
Query: 117 P-------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
P V +EVGE V ++DGPFA + ++ RV V I GR TPV+L
Sbjct: 234 PSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRVKALVEILGRSTPVDLE 293
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 294 FNQIEKI 300
>gi|163938104|ref|YP_001642988.1| transcription antitermination protein NusG [Bacillus
weihenstephanensis KBAB4]
gi|229009605|ref|ZP_04166831.1| Transcription antitermination protein nusG [Bacillus mycoides DSM
2048]
gi|229053942|ref|ZP_04195376.1| Transcription antitermination protein nusG [Bacillus cereus AH603]
gi|229131103|ref|ZP_04260015.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST196]
gi|229165084|ref|ZP_04292879.1| Transcription antitermination protein nusG [Bacillus cereus AH621]
gi|163860301|gb|ABY41360.1| NusG antitermination factor [Bacillus weihenstephanensis KBAB4]
gi|228618347|gb|EEK75377.1| Transcription antitermination protein nusG [Bacillus cereus AH621]
gi|228652316|gb|EEL08241.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST196]
gi|228721360|gb|EEL72881.1| Transcription antitermination protein nusG [Bacillus cereus AH603]
gi|228751627|gb|EEM01427.1| Transcription antitermination protein nusG [Bacillus mycoides DSM
2048]
Length = 177
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKITKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFEFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|117927503|ref|YP_872054.1| transcription antitermination protein nusG [Acidothermus
cellulolyticus 11B]
gi|117647966|gb|ABK52068.1| transcription antitermination protein nusG [Acidothermus
cellulolyticus 11B]
Length = 228
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 6/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E +A ++ R+ ++ + ++ +P E VV ++ G++ +R FPG
Sbjct: 50 QWYVVHTYAGYENRAKANLENRIQSLNMEDYIYQVEVPQEEVVEIKNGKRQIVKRNIFPG 109
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIM-----NQVEAAVQRP 117
YVL++ +TD+ + ++ TP V GF+G + P+P+T E+ + ++ EAA
Sbjct: 110 YVLVRMELTDESWAAVRYTPAVTGFVGPSASKPAPLTLDEVLRFLAPAVKSRKEAAAAAT 169
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V DGPFA+ + ++ ++ ++ V V IFGR TPVEL++NQV KI
Sbjct: 170 PKIVDFEVGESVTVMDGPFATLPATISEINPDQQKLKVLVSIFGRETPVELSFNQVAKI 228
>gi|154503736|ref|ZP_02040796.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149]
gi|153795836|gb|EDN78256.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149]
Length = 172
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVVELKNGVQKASQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+ + E+ ++ + E V V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMANLGIKQEDIV------VDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V G + G+++ ++E+K + + V +FGR TPVEL +++V K+
Sbjct: 119 EVGDTVTVLSGAWEGTVGMIQAINEQKQSLSINVELFGRETPVELNFSEVRKM 171
>gi|262201104|ref|YP_003272312.1| transcription termination/antitermination factor NusG [Gordonia
bronchialis DSM 43247]
gi|262084451|gb|ACY20419.1| transcription termination/antitermination factor NusG [Gordonia
bronchialis DSM 43247]
Length = 299
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G+ R+ PGY
Sbjct: 109 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 168
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI-EHIMNQVEAAVQRPVS---- 119
+L++ + D + +++TP V GF+G PSP++ +E+ + +M + EA
Sbjct: 169 ILVRMDLNDDSWGAVRNTPGVTGFVGMNSKPSPLSLNEVLQFLMPRTEAKKPAAAKGAGA 228
Query: 120 --------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
V FEVGE V V DGPFA+ + V+ E+ +V V V IFGR TP
Sbjct: 229 EGVEAAAAAATATIEVDFEVGESVTVMDGPFATLPASISEVNAEQRKVKVLVSIFGRETP 288
Query: 166 VELAYNQVEKI 176
VELA+NQVEKI
Sbjct: 289 VELAFNQVEKI 299
>gi|187918260|ref|YP_001883823.1| transcription antitermination protein NusG [Borrelia hermsii DAH]
gi|119861108|gb|AAX16903.1| transcription antitermination protein NusG [Borrelia hermsii DAH]
Length = 184
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 106/184 (57%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q +S EKK + I +S V ++ P ERV ++ G+K ER+
Sbjct: 1 MSRAWYVLQTFSQYEKKIEQEIKLLISEGIFGANVLDVKAPIERVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTG--ENPSPVTDSEIEHI-MNQVEAA 113
+PGY+LI+ + ++ + + I P V+ F+GT + P P++D E++ + M E
Sbjct: 61 WPGYILIELDLPEQDWKSTVANIIKIPGVVNFVGTNKEQKPLPISDEEVKSVFMLAGEIK 120
Query: 114 VQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ + ++ FE GERV + GPF SF GI+ ++D EK ++ V V IFGR TPVE+ +
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGIIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|153852603|ref|ZP_01994040.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814]
gi|149754245|gb|EDM64176.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814]
Length = 171
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P E VV ++ G + S+++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVVEMKNGVQKVSQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+TD+E+ + +QR + +
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPL------GIQREEVVMDY 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V G +A G++++++ +K + + V +FGR TPVE+ + +V+K+
Sbjct: 119 EEGDTVQVIAGAWADTVGVIQSINMQKQSLTINVELFGRETPVEIGFAEVKKM 171
>gi|219684566|ref|ZP_03539509.1| transcription termination/antitermination factor NusG [Borrelia
garinii PBr]
gi|219671928|gb|EED28982.1| transcription termination/antitermination factor NusG [Borrelia
garinii PBr]
Length = 184
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEAA 113
+PGY+LI+ + + V I VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120
Query: 114 VQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|296168428|ref|ZP_06850308.1| transcription antitermination protein NusG [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896722|gb|EFG76357.1| transcription antitermination protein NusG [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 250
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 61 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 120
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS +T ++ +
Sbjct: 121 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 180
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 181 AAAEAGGLERPAVEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 240
Query: 167 ELAYNQVEKI 176
EL ++QV KI
Sbjct: 241 ELTFSQVSKI 250
>gi|148543544|ref|YP_001270914.1| transcription antitermination protein nusG [Lactobacillus reuteri
DSM 20016]
gi|184152951|ref|YP_001841292.1| transcription antitermination protein NusG [Lactobacillus reuteri
JCM 1112]
gi|194468089|ref|ZP_03074075.1| NusG antitermination factor [Lactobacillus reuteri 100-23]
gi|148530578|gb|ABQ82577.1| transcription antitermination protein nusG [Lactobacillus reuteri
DSM 20016]
gi|183224295|dbj|BAG24812.1| transcription antitermination protein NusG [Lactobacillus reuteri
JCM 1112]
gi|194452942|gb|EDX41840.1| NusG antitermination factor [Lactobacillus reuteri 100-23]
Length = 180
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E + ++ R G++ + + +P E V V+ G+ + + FPG
Sbjct: 7 RWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ IM ++ + VS
Sbjct: 67 YVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRM--GTETTVSD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + G+ V V G FA+ V VD EK ++ V +FGR T EL ++Q++
Sbjct: 125 IDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQID 178
>gi|314924045|gb|EFS87876.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL001PA1]
gi|314965017|gb|EFT09116.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL082PA2]
gi|315093850|gb|EFT65826.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL060PA1]
gi|315104068|gb|EFT76044.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL050PA2]
gi|327326459|gb|EGE68248.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL103PA1]
Length = 303
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAAVQR------ 116
YVL++ +TD + ++ TP V GF+G P P+T D ++ + V A V R
Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVLARVSRENADKA 236
Query: 117 -------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L
Sbjct: 237 PSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 297 FNQIEKI 303
>gi|257438468|ref|ZP_05614223.1| transcription termination/antitermination factor NusG
[Faecalibacterium prausnitzii A2-165]
gi|257199047|gb|EEU97331.1| transcription termination/antitermination factor NusG
[Faecalibacterium prausnitzii A2-165]
Length = 176
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K + + L L+ +I +P+E V ++ G++ E + FPGY
Sbjct: 10 WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K VM D ++ +++T GF+G P P++ E+E + VE A P+ +V F
Sbjct: 70 VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM--GVEKAA--PL-TVDFN 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174
>gi|212637940|ref|YP_002314460.1| transcription antitermination protein NusG [Anoxybacillus
flavithermus WK1]
gi|212559420|gb|ACJ32475.1| Transcription antiterminator NusG [Anoxybacillus flavithermus WK1]
Length = 177
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G+ + + +P E + G+K +++
Sbjct: 1 MEKNWYVIHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEETDTKGGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ + E+ I+ ++ V
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLEEEVSAILKRM--GVDLI 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+ E V + +GPFA+F G ++ ++ +K +V V V +FGR TPVEL ++Q+EKI
Sbjct: 119 ELDFDFELNEAVRIKEGPFANFVGTIQEIEMDKQKVTVLVDMFGRETPVELDFSQIEKI 177
>gi|227363500|ref|ZP_03847620.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3]
gi|227545179|ref|ZP_03975228.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A]
gi|300909144|ref|ZP_07126605.1| transcription termination/antitermination factor NusG
[Lactobacillus reuteri SD2112]
gi|325681893|ref|ZP_08161411.1| transcription antitermination protein NusG [Lactobacillus reuteri
MM4-1A]
gi|227071437|gb|EEI09740.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3]
gi|227184825|gb|EEI64896.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A]
gi|300893009|gb|EFK86368.1| transcription termination/antitermination factor NusG
[Lactobacillus reuteri SD2112]
gi|324978537|gb|EGC15486.1| transcription antitermination protein NusG [Lactobacillus reuteri
MM4-1A]
Length = 186
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E + ++ R G++ + + +P E V V+ G+ + + FPG
Sbjct: 13 RWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ IM ++ + VS
Sbjct: 73 YVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRM--GTETTVSD 130
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + G+ V V G FA+ V VD EK ++ V +FGR T EL ++Q++
Sbjct: 131 IDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQID 184
>gi|291295566|ref|YP_003506964.1| NusG antitermination factor [Meiothermus ruber DSM 1279]
gi|290470525|gb|ADD27944.1| NusG antitermination factor [Meiothermus ruber DSM 1279]
Length = 185
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E+K +++ R+ G+ + ++ IP+E VV R+G +K R+
Sbjct: 1 MSIEWYAVHTYVGHEEKVKQNLEQRVKVLGMQDKIFQVLIPTEEVVEHREGGKKEVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
+PGY+ + + D + + +++TP V GF+GT +P P+T E++H++ A
Sbjct: 61 LYPGYIYVLVDLGDTPGEVNEAWEVVRNTPGVTGFVGTATHPVPLTPDEVQHLLEIAGLA 120
Query: 114 VQR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
++ P V F+ G+ V V GPFA F G+V V+ E+ +V V V IFGR TPVEL ++
Sbjct: 121 GKKETPKPQVTFKEGDVVRVVSGPFAEFTGVVSEVNLERQKVKVLVSIFGRETPVELEFS 180
Query: 172 QV 173
QV
Sbjct: 181 QV 182
>gi|269302953|gb|ACZ33053.1| transcription termination/antitermination factor NusG
[Chlamydophila pneumoniae LPCoLN]
Length = 182
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K T V+ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKSTAGVVEFLGGG-VPVALSEDEVRSILTDIEEKKSGVVQKHQF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|150015031|ref|YP_001307285.1| transcription antitermination protein NusG [Clostridium
beijerinckii NCIMB 8052]
gi|149901496|gb|ABR32329.1| NusG antitermination factor [Clostridium beijerinckii NCIMB 8052]
Length = 181
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + L+ L+ +I +P E VV + G++ S ++ FPG
Sbjct: 14 RWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKFPG 73
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M D+ ++ +++T V GF+G G P P++D E+E M +E V+ +
Sbjct: 74 YVLVKMLMGDEAWYVVRNTRGVTGFVGPGSKPVPLSDEEVES-MGVLEVPVE-----IDL 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + +K +V V +FGR T EL +NQVEK+V
Sbjct: 128 EVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEKLV 181
>gi|302671656|ref|YP_003831616.1| transcription termination/antitermination factor NusG [Butyrivibrio
proteoclasticus B316]
gi|302396129|gb|ADL35034.1| transcription termination/antitermination factor NusG [Butyrivibrio
proteoclasticus B316]
Length = 213
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 98/172 (56%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K ++ + L++ + E+ +P + VV V+ G + N +R+ FPGY
Sbjct: 46 WYVVHTYSGYENKVKANLEKTIENRHLENQILEVRVPLQDVVEVKNGARKNVQRKMFPGY 105
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ M D+ ++ +++T V GF+G G P P+TD+EI+ + ++ SV F
Sbjct: 106 VLVNMDMNDETWYVVRNTRGVTGFVGPGSKPVPLTDAEIKPL------GIKTDTISVDFG 159
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ + V G + G+V+ +D K + V +FGR TPVE+++ +V KI
Sbjct: 160 VGDEIAVIAGVWKDTAGVVQRMDFGKQTATINVDLFGRETPVEISFAEVRKI 211
>gi|160916271|ref|ZP_02078478.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991]
gi|158431995|gb|EDP10284.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991]
Length = 183
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E + E++ R+ GL + I + E+ + + G++V + F G
Sbjct: 8 QWYVVNTYAGHENRVRENLERRIETMGLQDKLFRIIVAEEKEIEYKNGKEVEKTKNLFSG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ ++ +MTD+ ++ +++TP V GF+G+ G P PV + E+E+I+ ++ +R V
Sbjct: 68 YLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMENILRRL-GMSERKV-Q 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+RV + G FA+ G V+ + +++ V ++FGR TP E+ Y +EK+
Sbjct: 126 VDFEVGDRVRILSGAFANVEGTVEELHDDEQTAVVLTILFGRETPTEIPYGDLEKV 181
>gi|289450232|ref|YP_003475548.1| transcription termination/antitermination factor NusG
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184779|gb|ADC91204.1| transcription termination/antitermination factor NusG
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 180
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY++ YS E K +++ + GL + E+++P E V ++ G+K +++ +
Sbjct: 11 TALWYVIHTYSGYENKVKDTLEQIVENRGLQDYIQEVSVPVEEQVEIKDGKKKVVQKKLY 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K ++TD++++ +++T V GF+G + P P+++ E+ IM ++ PV +
Sbjct: 71 PGYVLVKMILTDEMWYIVRNTRGVTGFVGPNK-PVPLSEEEL-AIMGLLKDW--DPV--I 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ VG+ V V +GP SF G V+ ++ EK +V V V +FGR TPVEL + QV +++
Sbjct: 125 DYAVGDSVKVINGPLESFIGTVEEINMEKKKVRVLVSMFGRETPVELEFTQVLRLL 180
>gi|30018366|ref|NP_829997.1| transcription antitermination protein NusG [Bacillus cereus ATCC
14579]
gi|30260287|ref|NP_842664.1| transcription antitermination protein NusG [Bacillus anthracis str.
Ames]
gi|42779177|ref|NP_976424.1| transcription antitermination protein NusG [Bacillus cereus ATCC
10987]
gi|49183130|ref|YP_026382.1| transcription antitermination protein NusG [Bacillus anthracis str.
Sterne]
gi|49476713|ref|YP_034448.1| transcription antitermination protein NusG [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|50196907|ref|YP_016699.2| transcription antitermination protein NusG [Bacillus anthracis str.
'Ames Ancestor']
gi|52145121|ref|YP_081707.1| transcription antitermination protein NusG [Bacillus cereus E33L]
gi|65317556|ref|ZP_00390515.1| COG0250: Transcription antiterminator [Bacillus anthracis str.
A2012]
gi|118475865|ref|YP_893016.1| transcription antitermination protein NusG [Bacillus thuringiensis
str. Al Hakam]
gi|170689570|ref|ZP_02880756.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0465]
gi|177655596|ref|ZP_02936977.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0174]
gi|206972266|ref|ZP_03233213.1| transcription antitermination protein NusG [Bacillus cereus AH1134]
gi|217957671|ref|YP_002336215.1| transcription antitermination protein NusG [Bacillus cereus AH187]
gi|218231706|ref|YP_002364945.1| transcription antitermination protein NusG [Bacillus cereus B4264]
gi|218895231|ref|YP_002443642.1| transcription antitermination protein NusG [Bacillus cereus G9842]
gi|222093866|ref|YP_002527916.1| transcription antitermination protein nusg [Bacillus cereus Q1]
gi|225862148|ref|YP_002747526.1| transcription antitermination protein NusG [Bacillus cereus
03BB102]
gi|227812769|ref|YP_002812778.1| transcription antitermination protein NusG [Bacillus anthracis str.
CDC 684]
gi|228898849|ref|ZP_04063131.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 4222]
gi|228905893|ref|ZP_04069790.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 200]
gi|228912835|ref|ZP_04076482.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228919046|ref|ZP_04082425.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228925349|ref|ZP_04088445.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931598|ref|ZP_04094504.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228937398|ref|ZP_04100044.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228943902|ref|ZP_04106287.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228950644|ref|ZP_04112778.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228956537|ref|ZP_04118333.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228963196|ref|ZP_04124365.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228970284|ref|ZP_04130943.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976854|ref|ZP_04137266.1| Transcription antitermination protein nusG [Bacillus thuringiensis
Bt407]
gi|228983351|ref|ZP_04143564.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229027944|ref|ZP_04184097.1| Transcription antitermination protein nusG [Bacillus cereus AH1271]
gi|229041001|ref|ZP_04189764.1| Transcription antitermination protein nusG [Bacillus cereus AH676]
gi|229067861|ref|ZP_04201178.1| Transcription antitermination protein nusG [Bacillus cereus F65185]
gi|229089227|ref|ZP_04220508.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-42]
gi|229107782|ref|ZP_04237418.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-15]
gi|229119758|ref|ZP_04249019.1| Transcription antitermination protein nusG [Bacillus cereus
95/8201]
gi|229125613|ref|ZP_04254645.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-Cer4]
gi|229136942|ref|ZP_04265569.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST26]
gi|229142902|ref|ZP_04271343.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST24]
gi|229148505|ref|ZP_04276761.1| Transcription antitermination protein nusG [Bacillus cereus m1550]
gi|229153874|ref|ZP_04282004.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
4342]
gi|229159269|ref|ZP_04287293.1| Transcription antitermination protein nusG [Bacillus cereus
R309803]
gi|229170947|ref|ZP_04298548.1| Transcription antitermination protein nusG [Bacillus cereus MM3]
gi|229176696|ref|ZP_04304100.1| Transcription antitermination protein nusG [Bacillus cereus
172560W]
gi|229182490|ref|ZP_04309741.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|229188381|ref|ZP_04315429.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
10876]
gi|229194486|ref|ZP_04321289.1| Transcription antitermination protein nusG [Bacillus cereus m1293]
gi|229604171|ref|YP_002864747.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. A0248]
gi|254684400|ref|ZP_05148260.1| transcription antitermination protein NusG [Bacillus anthracis str.
CNEVA-9066]
gi|254733749|ref|ZP_05191464.1| transcription antitermination protein NusG [Bacillus anthracis str.
Western North America USA6153]
gi|254739418|ref|ZP_05197118.1| transcription antitermination protein NusG [Bacillus anthracis str.
Kruger B]
gi|254751209|ref|ZP_05203247.1| transcription antitermination protein NusG [Bacillus anthracis str.
Vollum]
gi|254756808|ref|ZP_05208836.1| transcription antitermination protein NusG [Bacillus anthracis str.
Australia 94]
gi|300119593|ref|ZP_07057137.1| transcription antitermination protein NusG [Bacillus cereus SJ1]
gi|301051833|ref|YP_003790044.1| transcription antitermination protein NusG [Bacillus anthracis CI]
gi|29893906|gb|AAP07198.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
14579]
gi|30253608|gb|AAP24150.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. Ames]
gi|42735092|gb|AAS39032.1| transcription antitermination protein NusG [Bacillus cereus ATCC
10987]
gi|49177057|gb|AAT52433.1| transcription antitermination protein NusG [Bacillus anthracis str.
Sterne]
gi|49328269|gb|AAT58915.1| transcription antitermination factor [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|50082969|gb|AAT29174.2| transcription antitermination protein NusG [Bacillus anthracis str.
'Ames Ancestor']
gi|51978590|gb|AAU20140.1| transcription antitermination factor [Bacillus cereus E33L]
gi|118415090|gb|ABK83509.1| transcription antitermination protein nusG [Bacillus thuringiensis
str. Al Hakam]
gi|170666483|gb|EDT17260.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0465]
gi|172080060|gb|EDT65158.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0174]
gi|206732840|gb|EDZ50015.1| transcription antitermination protein NusG [Bacillus cereus AH1134]
gi|217068204|gb|ACJ82454.1| transcription antitermination protein NusG [Bacillus cereus AH187]
gi|218159663|gb|ACK59655.1| transcription termination/antitermination factor NusG [Bacillus
cereus B4264]
gi|218543346|gb|ACK95740.1| transcription antitermination protein NusG [Bacillus cereus G9842]
gi|221237914|gb|ACM10624.1| transcription antitermination factor [Bacillus cereus Q1]
gi|225790801|gb|ACO31018.1| transcription termination/antitermination factor NusG [Bacillus
cereus 03BB102]
gi|227003815|gb|ACP13558.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. CDC 684]
gi|228588952|gb|EEK46967.1| Transcription antitermination protein nusG [Bacillus cereus m1293]
gi|228595055|gb|EEK52826.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
10876]
gi|228600945|gb|EEK58514.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|228606739|gb|EEK64156.1| Transcription antitermination protein nusG [Bacillus cereus
172560W]
gi|228612487|gb|EEK69708.1| Transcription antitermination protein nusG [Bacillus cereus MM3]
gi|228624161|gb|EEK80963.1| Transcription antitermination protein nusG [Bacillus cereus
R309803]
gi|228629555|gb|EEK86252.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
4342]
gi|228634921|gb|EEK91494.1| Transcription antitermination protein nusG [Bacillus cereus m1550]
gi|228640523|gb|EEK96912.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST24]
gi|228646480|gb|EEL02687.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST26]
gi|228657805|gb|EEL13611.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-Cer4]
gi|228663659|gb|EEL19238.1| Transcription antitermination protein nusG [Bacillus cereus
95/8201]
gi|228675631|gb|EEL30839.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-15]
gi|228694066|gb|EEL47748.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-42]
gi|228715220|gb|EEL67079.1| Transcription antitermination protein nusG [Bacillus cereus F65185]
gi|228727298|gb|EEL78492.1| Transcription antitermination protein nusG [Bacillus cereus AH676]
gi|228733332|gb|EEL84161.1| Transcription antitermination protein nusG [Bacillus cereus AH1271]
gi|228776341|gb|EEM24694.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228782824|gb|EEM30990.1| Transcription antitermination protein nusG [Bacillus thuringiensis
Bt407]
gi|228789393|gb|EEM37313.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228796454|gb|EEM43893.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228803102|gb|EEM49924.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228808995|gb|EEM55480.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228815735|gb|EEM61971.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228822231|gb|EEM68213.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228828026|gb|EEM73754.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834271|gb|EEM79812.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228840571|gb|EEM85833.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228846771|gb|EEM91776.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228853708|gb|EEM98468.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 200]
gi|228860749|gb|EEN05127.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 4222]
gi|229268579|gb|ACQ50216.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. A0248]
gi|298723065|gb|EFI63963.1| transcription antitermination protein NusG [Bacillus cereus SJ1]
gi|300374002|gb|ADK02906.1| transcription antitermination protein NusG [Bacillus cereus biovar
anthracis str. CI]
gi|324324086|gb|ADY19346.1| transcription antitermination protein NusG [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|326937890|gb|AEA13786.1| transcription antitermination protein NusG [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 177
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|51598651|ref|YP_072839.1| transcription antitermination factor [Borrelia garinii PBi]
gi|51573222|gb|AAU07247.1| transcription antitermination factor [Borrelia garinii PBi]
Length = 184
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q YS EKK + I +S +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVIQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D V + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDVVANIIK-VQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D ++ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYKRKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|311029034|ref|ZP_07707124.1| transcription antitermination protein NusG [Bacillus sp. m3-13]
Length = 177
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ D EI I+ ++ +++
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLDDEIAFILKRM-GMMEKQ 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V F++ E V V++GPFA+F G + +D++K +V V V +FGR TPVEL + Q+EK+
Sbjct: 120 V-EVDFDLKESVKVTEGPFANFTGHIVEMDKDKHKVKVLVNMFGRETPVELDFTQIEKL 177
>gi|219685431|ref|ZP_03540249.1| transcription termination/antitermination factor NusG [Borrelia
garinii Far04]
gi|219672987|gb|EED30008.1| transcription termination/antitermination factor NusG [Borrelia
garinii Far04]
Length = 184
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEAA 113
+PGY+LI+ + + V I VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120
Query: 114 VQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|50843343|ref|YP_056570.1| transcription antitermination protein NusG [Propionibacterium acnes
KPA171202]
gi|50840945|gb|AAT83612.1| transcription antitermination protein NusG [Propionibacterium acnes
KPA171202]
gi|315106013|gb|EFT77989.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL030PA1]
Length = 303
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAAVQR------ 116
YVL++ +TD + ++ TP V GF+G P P+T D ++ + V A V R
Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKT 236
Query: 117 -------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L
Sbjct: 237 SSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 297 FNQIEKI 303
>gi|229074157|ref|ZP_04207203.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-18]
gi|229094818|ref|ZP_04225823.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-29]
gi|229100895|ref|ZP_04231699.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-28]
gi|229113772|ref|ZP_04243207.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-3]
gi|228669643|gb|EEL25050.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-3]
gi|228682474|gb|EEL36547.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-28]
gi|228688561|gb|EEL42434.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-29]
gi|228708927|gb|EEL61054.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-18]
Length = 177
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKIMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|327333165|gb|EGE74892.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL097PA1]
Length = 303
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-------QVEAAVQR 116
YVL++ +TD + ++ TP V GF+G P P+T E+ ++ E A +
Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKT 236
Query: 117 P-------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L
Sbjct: 237 PSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 297 FNQIEKI 303
>gi|289424853|ref|ZP_06426635.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK187]
gi|289427697|ref|ZP_06429409.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J165]
gi|295131414|ref|YP_003582077.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK137]
gi|289154816|gb|EFD03499.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK187]
gi|289159188|gb|EFD07380.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J165]
gi|291377288|gb|ADE01143.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK137]
gi|313763077|gb|EFS34441.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL013PA1]
gi|313773029|gb|EFS38995.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL074PA1]
gi|313794084|gb|EFS42106.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA1]
gi|313802424|gb|EFS43649.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA2]
gi|313807843|gb|EFS46327.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL087PA2]
gi|313812044|gb|EFS49758.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL083PA1]
gi|313816875|gb|EFS54589.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL059PA1]
gi|313819205|gb|EFS56919.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL046PA2]
gi|313819756|gb|EFS57470.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL036PA1]
gi|313823873|gb|EFS61587.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL036PA2]
gi|313827234|gb|EFS64948.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL063PA1]
gi|313828436|gb|EFS66150.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL063PA2]
gi|313831107|gb|EFS68821.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL007PA1]
gi|313833490|gb|EFS71204.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL056PA1]
gi|313838124|gb|EFS75838.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL086PA1]
gi|314914564|gb|EFS78395.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA4]
gi|314919192|gb|EFS83023.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL050PA1]
gi|314920626|gb|EFS84457.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL050PA3]
gi|314925735|gb|EFS89566.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL036PA3]
gi|314931464|gb|EFS95295.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL067PA1]
gi|314957024|gb|EFT01130.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL027PA1]
gi|314957838|gb|EFT01941.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL002PA1]
gi|314960679|gb|EFT04780.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL002PA2]
gi|314963365|gb|EFT07465.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL082PA1]
gi|314969740|gb|EFT13838.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL037PA1]
gi|314974289|gb|EFT18385.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL053PA1]
gi|314976940|gb|EFT21035.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL045PA1]
gi|314979899|gb|EFT23993.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL072PA2]
gi|314985803|gb|EFT29895.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA1]
gi|314988414|gb|EFT32505.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA2]
gi|314988838|gb|EFT32929.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA3]
gi|315077100|gb|EFT49175.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL053PA2]
gi|315079791|gb|EFT51767.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL078PA1]
gi|315084901|gb|EFT56877.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL027PA2]
gi|315087231|gb|EFT59207.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL002PA3]
gi|315088964|gb|EFT60940.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL072PA1]
gi|315096811|gb|EFT68787.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL038PA1]
gi|315100103|gb|EFT72079.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL059PA2]
gi|315100572|gb|EFT72548.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL046PA1]
gi|315109344|gb|EFT81320.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL030PA2]
gi|327325647|gb|EGE67445.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL096PA2]
gi|327328241|gb|EGE70008.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL096PA3]
gi|327445317|gb|EGE91971.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL043PA1]
gi|327446958|gb|EGE93612.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL043PA2]
gi|327449046|gb|EGE95700.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL013PA2]
gi|327451392|gb|EGE98046.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL092PA1]
gi|327452608|gb|EGE99262.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL087PA3]
gi|327457651|gb|EGF04306.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL083PA2]
gi|328751908|gb|EGF65524.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL087PA1]
gi|328756946|gb|EGF70562.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL020PA1]
gi|328759041|gb|EGF72657.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL025PA2]
gi|328762258|gb|EGF75750.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL099PA1]
Length = 303
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQV 110
YVL++ +TD + ++ TP V GF+G P P+T E+ ++ ++
Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKT 236
Query: 111 EAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L
Sbjct: 237 SSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 297 FNQIEKI 303
>gi|302384847|ref|YP_003820669.1| NusG antitermination factor [Clostridium saccharolyticum WM1]
gi|302195475|gb|ADL03046.1| NusG antitermination factor [Clostridium saccharolyticum WM1]
Length = 171
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K I + L + E+++P E V+ ++ G + ++++ FPG
Sbjct: 5 HWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+T+ E+E + + E + V F
Sbjct: 65 YVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMEKLGFKNEEII------VGF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V+ G + G +K+++E K + + V +FGR TPVEL +++V+K+
Sbjct: 119 EEGDTVVVTSGAWKDTVGAIKSINEGKKTITMSVEMFGRETPVELNFSEVKKM 171
>gi|119953185|ref|YP_945394.1| transcription antitermination protein NusG [Borrelia turicatae
91E135]
gi|119861956|gb|AAX17724.1| transcription antitermination protein NusG [Borrelia turicatae
91E135]
Length = 184
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 106/184 (57%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q +S E+K + I +S V ++ P ERV ++ G+K ERR
Sbjct: 1 MSRAWYVLQTFSQYERKVEQEIKLLISEGVFGSNVLDVKAPIERVEEIKNGKKRIRERRI 60
Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTG--ENPSPVTDSEIEHI-MNQVEAA 113
+PGY+LI+ + ++ + + I P V+ F+GT + P P++D E++ + M E
Sbjct: 61 WPGYILIELDLPEQEWKSTVANIIKIPGVVNFVGTNKEQKPFPISDEEVKSVFMLAGEIK 120
Query: 114 VQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ + ++ FE GERV + GPF SF G++ ++D EK ++ V V IFGR TPVE+ +
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EK+
Sbjct: 181 IEKV 184
>gi|167772354|ref|ZP_02444407.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM
17241]
gi|167665457|gb|EDS09587.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM
17241]
Length = 174
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K +I + L L E+ +P++ V ++ +K ER+ FPG
Sbjct: 7 RWYVVHTYSGYENKVATNIEKAVENRKLHDLFGEVKVPTQTVTEIKDNKKREVERKIFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +MTD ++ +++ V GF+G G P P+T+ E++ + V++ V F
Sbjct: 67 YVLVKMIMTDDSWYVVRNIRGVTGFVGPGSKPVPLTEEEVQRL------GVEQRNIEVNF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V VS G F G V +D + + V V V + G+ PVEL +QVE +
Sbjct: 121 AVGDSVRVSGGYLEGFIGTVDEIDLQDALVRVTVSMMGKDVPVELELDQVETL 173
>gi|145596449|ref|YP_001160746.1| transcription termination/antitermination factor NusG [Salinispora
tropica CNB-440]
gi|145305786|gb|ABP56368.1| transcription antitermination protein nusG [Salinispora tropica
CNB-440]
Length = 242
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 64 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQVQAKVFPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP---- 117
+L++ +T + Y +++TP V GF+G + P+P++ E+ + AV++
Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 242
>gi|1709422|sp|P27309|NUSG_STRVG RecName: Full=Transcription antitermination protein nusG; AltName:
Full=Butanolide receptor
gi|1217911|dbj|BAA09301.1| NusG like protein [Streptomyces virginiae]
Length = 299
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 231
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 232 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 292 SFDQIQK 298
>gi|320101665|ref|YP_004177256.1| NusG antitermination factor [Isosphaera pallida ATCC 43644]
gi|319748947|gb|ADV60707.1| NusG antitermination factor [Isosphaera pallida ATCC 43644]
Length = 285
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++V S+ E E++ R+ GL+ ++ +P + V +R +K ER+ +PGY
Sbjct: 105 WYVLKVQSSREDSIREAMLKRVRIQGLERFFGDVVVPKRKEVEIRNNKKKIVERKTYPGY 164
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------VEAAVQR 116
+L++ + ++ + TI++TP V F+G +P+ ++ +E++ I+ +E A
Sbjct: 165 LLVQMELNERTWFTIRETPGVGDFVGPPGSPTKISPAEVQQILGTPSADEKVGIEEASAE 224
Query: 117 PVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
PV + FE G+RV + DGPF +F G V+ V + V V +VIF R TPV+L Y Q+E+
Sbjct: 225 PVKPKIDFERGDRVKIKDGPFENFEGTVEEVVPARGVVKVMIVIFNRPTPVDLEYWQIER 284
Query: 176 I 176
I
Sbjct: 285 I 285
>gi|313812129|gb|EFS49843.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL025PA1]
Length = 303
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PG
Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQV 110
YVL++ +TD + ++ TP V GF+G P P+T E+ ++ ++
Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKT 236
Query: 111 EAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L
Sbjct: 237 SSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296
Query: 170 YNQVEKI 176
+NQ+EKI
Sbjct: 297 FNQIEKI 303
>gi|225573375|ref|ZP_03782130.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM
10507]
gi|225039288|gb|EEG49534.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM
10507]
Length = 172
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P E VV +R G + + +++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPMEDVVEMRNGTQKSVQKKLFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +Q P V F
Sbjct: 65 YVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMRPL------GIQEPSIVVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V+ G + GI+++++ +K + V +FGR TPVE+++ +++K
Sbjct: 119 EEGDEVVVTGGAWKDTVGIIQSLNIQKQVATINVELFGRETPVEISFLEIKK 170
>gi|302536235|ref|ZP_07288577.1| transcription termination/antitermination factor NusG [Streptomyces
sp. C]
gi|302445130|gb|EFL16946.1| transcription termination/antitermination factor NusG [Streptomyces
sp. C]
Length = 304
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKQAAEEAG 236
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 237 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 296
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 297 SFDQIQK 303
>gi|159039849|ref|YP_001539102.1| NusG antitermination factor [Salinispora arenicola CNS-205]
gi|157918684|gb|ABW00112.1| NusG antitermination factor [Salinispora arenicola CNS-205]
Length = 242
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 64 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQIQAKVFPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP---- 117
+L++ +T + Y +++TP V GF+G + P+P++ E+ + AV++
Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 242
>gi|224534614|ref|ZP_03675188.1| transcription termination/antitermination factor NusG [Borrelia
spielmanii A14S]
gi|224514083|gb|EEF84403.1| transcription termination/antitermination factor NusG [Borrelia
spielmanii A14S]
Length = 184
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E++ +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIKLLISEGVFSGVVLDVKAPIEKIEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+L++ + D V + IK VI F+G G+ P P++D E++ + M E
Sbjct: 61 WPGYILVELDLPEVGWKDIVANIIK-VQGVINFVGVSKGQRPIPISDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVSVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|254383188|ref|ZP_04998542.1| transcription antitermination protein nusG [Streptomyces sp. Mg1]
gi|194342087|gb|EDX23053.1| transcription antitermination protein nusG [Streptomyces sp. Mg1]
Length = 303
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 101/188 (53%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PG
Sbjct: 115 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 174
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------- 112
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 175 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEA 234
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 235 GLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVE 294
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 295 LSFDQIQK 302
>gi|325003301|ref|ZP_08124413.1| NusG antitermination factor [Pseudonocardia sp. P1]
Length = 308
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 118 WYVVHSYAGYENKVKSNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKKVQRKVLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE-IEHIMNQVEAAVQRPVS---- 119
+L++ + D+ + +++TP V GF+G PSP+T +E ++ ++ + EA + +
Sbjct: 178 ILVRMELNDQSWGAVRNTPGVTGFVGATSKPSPLTVNEVVKFLLPKTEAPKKEAEAGKPA 237
Query: 120 --------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TP
Sbjct: 238 AAGAAATTGGSSTVEVDFEVGESVTVMDGPFATLPASISEVNIDAQKLKVLVSIFGRETP 297
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 298 VELGFNQVSKI 308
>gi|217030|dbj|BAA01261.1| virginiae butanolide receptor [Streptomyces virginiae]
Length = 319
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 101/188 (53%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PG
Sbjct: 131 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 190
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------- 112
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 191 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEA 250
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 251 GLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVE 310
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 311 LSFDQIQK 318
>gi|172039966|ref|YP_001799680.1| transcription antitermination protein NusG [Corynebacterium
urealyticum DSM 7109]
gi|171851270|emb|CAQ04246.1| transcription antitermination protein [Corynebacterium urealyticum
DSM 7109]
Length = 294
Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 26/198 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E V ++ G++ +R+ PGY
Sbjct: 96 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVTELKDGKRKQVKRKLLPGY 155
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
VL++ + D + ++DTP V F+G P+PV E+ + E A
Sbjct: 156 VLVRIELDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETATAAAEDQGQDA 215
Query: 116 --------------RPVS---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+P S V +EVGE V + GPFAS + +D ++R+ V
Sbjct: 216 ADVDVSATGVAVPPKPASETVEVDYEVGESVTILSGPFASVAATISEIDTVQNRLKAMVS 275
Query: 159 IFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QV K+
Sbjct: 276 IFGRETPVELEFDQVAKL 293
>gi|254823017|ref|ZP_05228018.1| transcription antitermination protein NusG [Mycobacterium
intracellulare ATCC 13950]
Length = 267
Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 78 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 137
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ +TD + +++TP V GF+G PS +T D ++ ++ +
Sbjct: 138 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 197
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 198 TAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 257
Query: 167 ELAYNQVEKI 176
EL ++QV K+
Sbjct: 258 ELTFSQVSKL 267
>gi|121730820|ref|ZP_01682892.1| transcription termination factor rho [Vibrio cholerae V52]
gi|121627605|gb|EAX60295.1| transcription termination factor rho [Vibrio cholerae V52]
Length = 123
Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
YVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAP 122
>gi|295099392|emb|CBK88481.1| transcription antitermination protein nusG [Eubacterium
cylindroides T2-87]
Length = 181
Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY+V Y+ E + E++ R+ GL+ + +I + E+ + + G+ V +
Sbjct: 4 LKKEWYVVNTYAGQENRVKENLERRVKTMGLEDSLFQIVVAEEKEIEYKNGKPVEKTKNL 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
F GYVL++ +MTD+ ++ +++TP V GF+G+ G P PV+ EI+ ++ ++ Q
Sbjct: 64 FSGYVLVQMIMTDEAWYVVRNTPGVTGFIGSSGKGAKPFPVSQEEIDSVLRRL--GRQDM 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V + +G F + G V+ +D++K V +++FGR TP ++ Y ++K+
Sbjct: 122 SVQVDFEVGDTVEILNGAFKNSEGTVEKMDDDKKEATVLLILFGRETPTDIPYMDLKKV 180
>gi|302869988|ref|YP_003838625.1| transcription termination/antitermination factor NusG
[Micromonospora aurantiaca ATCC 27029]
gi|315501449|ref|YP_004080336.1| nusg antitermination factor [Micromonospora sp. L5]
gi|302572847|gb|ADL49049.1| transcription termination/antitermination factor NusG
[Micromonospora aurantiaca ATCC 27029]
gi|315408068|gb|ADU06185.1| NusG antitermination factor [Micromonospora sp. L5]
Length = 240
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDFIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN---QVEAAVQRPV 118
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + E +P
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181
Query: 119 SSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240
>gi|291286300|ref|YP_003503116.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809]
gi|290883460|gb|ADD67160.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809]
Length = 174
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EK+ V + ++ L + ++ IP+E V+ ++KG+K S+++
Sbjct: 1 MAKQWYVVHTYSGFEKRVVTLLEEKVKNEKLADQIDDVLIPTEDVIELKKGKKKVSKKKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ M+ +H +K PKV GF+G G NP P+ + +++ +++ ++ R ++S
Sbjct: 61 FPGYILVHMEMSTTNWHVVKSIPKVTGFVG-GINPVPIPEHDVKAMIDLAKSESPR-IAS 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E G+ V V DGPF F G V V+ +K +V V V IFGR TPVEL Y QV+++
Sbjct: 119 KYVE-GDTVEVIDGPFLGFTGTVDEVNPDKEKVRVIVSIFGRQTPVELDYLQVKRV 173
>gi|226322715|ref|ZP_03798233.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758]
gi|225208876|gb|EEG91230.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758]
Length = 171
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDEILEVRVPMQEVVELKNGVQKASQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+TD E+ + +Q+ V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPL------GIQKEDIVVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V+ G + G+++ ++ K + + V +FGR TPVE+++ +V+K+
Sbjct: 119 EEGDTVTVTGGAWEGTVGMIQTINMAKQSLTINVDLFGRETPVEISFAEVKKM 171
>gi|134103300|ref|YP_001108961.1| putative transcription antitermination regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291004481|ref|ZP_06562454.1| putative transcription antitermination regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133915923|emb|CAM06036.1| putative transcription antitermination regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 283
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V Y+ E K ++ R ++ + ++ +P+E V ++ G++ +R+ PG
Sbjct: 97 EWYVVHSYAGYENKVKTNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKLVQRKVLPG 156
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
Y+L++ + D + +++TP V GF+G +PSP++ ++ + +P +
Sbjct: 157 YILVRMELNDASWSAVRNTPGVTGFIGATSHPSPLSIDDVLKFLAPRAEKEAKPEAGKKA 216
Query: 120 ----------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V FEVGE + V DGPFA+ + V+ + ++ V V IFGR TPVEL+
Sbjct: 217 AAPAAAKPSVEVDFEVGESITVMDGPFATLPATISEVNADAQKLKVLVSIFGRETPVELS 276
Query: 170 YNQVEKI 176
+NQV KI
Sbjct: 277 FNQVSKI 283
>gi|212550368|ref|YP_002308685.1| transcription antitermination protein NusG [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|212548606|dbj|BAG83274.1| transcription antitermination protein NusG [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 177
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M R+Y+++ + E K E + + + S L + ++ +P+ERVV +G+ ER
Sbjct: 1 MERRFYVLRAVNGKESKVKECLESEIRKNSNLRDCILQVIVPTERVVRNIRGKNYRKERA 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
F PGYV+I+AV+ +V H IK V GFLG G P P+ E+ I+ QV+ R
Sbjct: 61 FLPGYVVIEAVLKSEVVHFIKSINFVSGFLG-GNRPVPLRPVEVSRILGQVDEMQNRTEE 119
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V ++ GPF F G ++ V +K R+ V V IFGR +P+EL Y QVEK
Sbjct: 120 FDVNYNVGETVKITFGPFTGFYGEIEEVHPDKKRLKVMVKIFGRKSPLELGYLQVEK 176
>gi|15618000|ref|NP_224284.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae CWL029]
gi|33241411|ref|NP_876352.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae TW-183]
gi|4376333|gb|AAD18229.1| Transcriptional Antitermination [Chlamydophila pneumoniae CWL029]
gi|33235919|gb|AAP98009.1| transcription antitermination factor [Chlamydophila pneumoniae
TW-183]
Length = 182
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T ++ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLVKMHLTDESWLYVKSTAGIVEFLGGG-VPVALSEDEVRSILTDIEEKKSGVVQKHQF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|25027042|ref|NP_737096.1| transcription antitermination protein NusG [Corynebacterium
efficiens YS-314]
gi|259508475|ref|ZP_05751375.1| transcription antitermination protein NusG [Corynebacterium
efficiens YS-314]
gi|23492322|dbj|BAC17296.1| putative transcription antitermination protein NusG
[Corynebacterium efficiens YS-314]
gi|259163939|gb|EEW48493.1| transcription antitermination protein NusG [Corynebacterium
efficiens YS-314]
Length = 287
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY
Sbjct: 93 WYIIQCYSGYENKVKANLDMRAQTLEVEEDIYEVVVPIEQVTEIRDGKRKLVKRKLLPGY 152
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
VL++ M D+V+ ++DTP V F+G N + V ++ + E+A
Sbjct: 153 VLVRMEMNDRVWSVVRDTPGVTSFVGNEGNATAVKHRDVAKFLMPQESAVVAGEAAPTTA 212
Query: 114 -----VQRPVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
V P S V F+VGE V + G FAS + + ++D E ++ V IFGR
Sbjct: 213 EGEQVVAMPTDSAAQQVTVDFQVGEAVTILTGAFASVSATISSIDVENQKLEALVSIFGR 272
Query: 163 VTPVELAYNQVEKI 176
TPV+L ++QVEKI
Sbjct: 273 ETPVDLKFDQVEKI 286
>gi|326382994|ref|ZP_08204683.1| transcription antitermination protein NusG [Gordonia neofelifaecis
NRRL B-59395]
gi|326198130|gb|EGD55315.1| transcription antitermination protein NusG [Gordonia neofelifaecis
NRRL B-59395]
Length = 249
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G+ R+ PGY
Sbjct: 57 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 116
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI-EHIMNQVE------------ 111
+L++ + D+ + +++TP V GF+G PSP++ E+ + +M + E
Sbjct: 117 ILVRMELNDESWSAVRNTPGVTGFVGMTSRPSPLSIKEVLQFLMPRAEVRKAEAAKAAAA 176
Query: 112 --------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
AA + V FEVGE V V DGPFA+ + V+ E+ +V V V IFGR
Sbjct: 177 AGESVEAAAAAASNLVEVDFEVGESVTVMDGPFATLPASISEVNTEQRKVKVLVSIFGRE 236
Query: 164 TPVELAYNQVEKI 176
TPVEL +NQVEK+
Sbjct: 237 TPVELGFNQVEKL 249
>gi|238061137|ref|ZP_04605846.1| transcription termination/antitermination factor nusG
[Micromonospora sp. ATCC 39149]
gi|237882948|gb|EEP71776.1| transcription termination/antitermination factor nusG
[Micromonospora sp. ATCC 39149]
Length = 240
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQIQAKVFPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN---QVEAAVQRPV 118
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + E +P
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPTVETEQKKAKPE 181
Query: 119 SSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 240
>gi|269955419|ref|YP_003325208.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894]
gi|269304100|gb|ACZ29650.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894]
Length = 265
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + +I +P E V ++ +K R PGY
Sbjct: 80 WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKTVRRVRIPGY 139
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI----MNQVEAAVQRPVSS 120
VL++ +TD+ + ++ TP V GF+G P P+T E+ + M + AA +P ++
Sbjct: 140 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPTMLEAPAAAGKPSTA 199
Query: 121 VF----------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
FEVGE V V+DGPF + + ++ E ++ V V IFGR TPVEL++
Sbjct: 200 AAKAKAAAVVVDFEVGESVTVTDGPFDTLPATISEINVEAQKLKVLVSIFGRETPVELSF 259
Query: 171 NQVEKI 176
NQV KI
Sbjct: 260 NQVAKI 265
>gi|330470187|ref|YP_004407930.1| nusg antitermination factor [Verrucosispora maris AB-18-032]
gi|328813158|gb|AEB47330.1| nusg antitermination factor [Verrucosispora maris AB-18-032]
Length = 240
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN---QVEAAVQRPV 118
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + E +P
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181
Query: 119 SSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240
>gi|227873027|ref|ZP_03991322.1| transcriptional antiterminator NusG [Oribacterium sinus F0268]
gi|227841102|gb|EEJ51437.1| transcriptional antiterminator NusG [Oribacterium sinus F0268]
Length = 176
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+ YS E K + + GL ++ E+++P + V+ V+ G + ++++ FPG
Sbjct: 9 RWYVAHTYSGYENKVKMDLEKTIDNRGLQDVILEVSVPMQPVIEVKNGVEKKTDKKMFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D+ ++ +++T V GF+G G P P+++ EI + ++ V F
Sbjct: 69 YVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEI------LTLGYRKSEVLVDF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V G + G++ ++++K V + V +FGR TPVEL+Y +V+K+
Sbjct: 123 AEGDTVSVVSGAWKDTVGVITEINDQKKTVTINVEMFGRDTPVELSYGEVQKL 175
>gi|328949968|ref|YP_004367303.1| NusG antitermination factor [Marinithermus hydrothermalis DSM
14884]
gi|328450292|gb|AEB11193.1| NusG antitermination factor [Marinithermus hydrothermalis DSM
14884]
Length = 185
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E K +I R G++ + ++ IP+E +V R+G +K R+
Sbjct: 1 MSIEWYAVHTYVGYEDKVKANIEKRAKALGMEDKIFQVLIPTEEIVEHREGGKKEVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
FPGYV ++ + D + + ++ TP V GF+GT P P+T E++ I+ A
Sbjct: 61 LFPGYVFVQMDLGDNPEDPNEAWEVVRHTPGVTGFVGTATRPVPLTPDEVQGILEASGVA 120
Query: 114 VQR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
++ P V F+ G+ V V GPFA F G+V + E+++V V V IFGR TPVEL ++
Sbjct: 121 GKKEGPKPQVSFKEGDVVRVVSGPFADFTGVVSEISPERNKVKVLVSIFGRETPVELDFS 180
Query: 172 QV 173
QV
Sbjct: 181 QV 182
>gi|238916244|ref|YP_002929761.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC
27750]
gi|238871604|gb|ACR71314.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC
27750]
Length = 178
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L + E+ +P E VV ++ G K ++++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122
YVL+K VM D ++ +++T V GF+G G P P+T +EI+++ +E + +PV
Sbjct: 65 YVLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQFA 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+VG++V + G + G + N++E K + + V +FGR TPVE+ + V+
Sbjct: 125 GKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176
>gi|210613431|ref|ZP_03289714.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787]
gi|210151174|gb|EEA82182.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787]
Length = 176
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P VV ++ G + ++++ FPG
Sbjct: 10 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMLEVVEMKNGTQKAAQKKMFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I +M D ++ +++T V GF+G G P P+T++EI+ + + V F
Sbjct: 70 YVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEIDAL------GIMDADIVVDF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V+ G + G+++ V+ +K + + V +FGR TPVE+++ +V+K+
Sbjct: 124 EVGEVVKVTKGAWKDTIGVIQEVNAQKQSLVINVELFGRETPVEISFAEVKKM 176
>gi|320449272|ref|YP_004201368.1| transcription termination/antitermination factor NusG [Thermus
scotoductus SA-01]
gi|320149441|gb|ADW20819.1| transcription termination/antitermination factor NusG [Thermus
scotoductus SA-01]
Length = 184
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
M+ WY V Y E+KA ++ R+ G++ + ++ IP+E VV +R+G K ++
Sbjct: 1 MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVELREGGKKEVVKKK 60
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ ++ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 61 LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ EK +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180
Query: 173 VEK 175
V K
Sbjct: 181 VVK 183
>gi|312200033|ref|YP_004020094.1| NusG antitermination factor [Frankia sp. EuI1c]
gi|311231369|gb|ADP84224.1| NusG antitermination factor [Frankia sp. EuI1c]
Length = 261
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+S ++ + +I +P E V V+ G++ ++ +PGY
Sbjct: 88 WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPLEEVPVVKNGKRQMVTQKKYPGY 147
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRPVSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ + V
Sbjct: 148 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRREEVFSILVPPAKKEKKVETVKVQE 207
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 208 FDVGESVTVMDGPFATLPATISEINVDAQRLKVLVSIFGRETPVELQFNQVAKI 261
>gi|160944618|ref|ZP_02091845.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii
M21/2]
gi|158443802|gb|EDP20806.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii
M21/2]
gi|295104378|emb|CBL01922.1| transcription antitermination protein nusG [Faecalibacterium
prausnitzii SL3/3]
Length = 183
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 6/171 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY+V YS E K + + L L+ +I +P E V + K G++ E + FPG
Sbjct: 16 WYVVHTYSGYENKVANDLQTMVENRHLQELICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VM D ++ +++T GF+G P P+T E+E + VE A P+ SV F
Sbjct: 76 YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM--GVEKAA--PL-SVDF 130
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 131 AVGDTVQITAGPLEGFMGLVEAIDTENFKVKLKVNMFGRETPAEVEIGQVE 181
>gi|111115223|ref|YP_709841.1| transcription antitermination factor [Borrelia afzelii PKo]
gi|110890497|gb|ABH01665.1| transcription antitermination factor [Borrelia afzelii PKo]
Length = 184
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D V + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIK-VQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|85057746|ref|YP_456662.1| transcription antitermination protein nusG [Aster yellows
witches'-broom phytoplasma AYWB]
gi|84789851|gb|ABC65583.1| transcription antitermination protein nusG [Aster yellows
witches'-broom phytoplasma AYWB]
Length = 199
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 105/177 (59%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P
Sbjct: 25 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 84
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD+ + +++TP++ GFLG+ G P P++++EI ++ ++ + +P
Sbjct: 85 GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKM-GIINKPDY 143
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G++V + G F G V ++D ++ ++ +EV +FGR TPVE+++N ++I
Sbjct: 144 KKF--IGKKVEIISGSFVGQIGQVSSIDADREKMILEVDLFGRATPVEISFNDFKEI 198
>gi|256831815|ref|YP_003160542.1| NusG antitermination factor [Jonesia denitrificans DSM 20603]
gi|256685346|gb|ACV08239.1| NusG antitermination factor [Jonesia denitrificans DSM 20603]
Length = 273
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E + ++G R+ ++ + +I +P E V ++ +K R PG
Sbjct: 92 QWYVIHSYAGYENRVKSNLGTRIQSLNMEDYIFQIEVPMEEVAEIKNAQKKIVRRVRIPG 151
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI----MNQVEAAVQRPVS 119
YVL++ +TD+ + T++ TP V GF+G P P+T E+ + + Q E+ ++ +
Sbjct: 152 YVLVRMDLTDESWGTVRHTPGVTGFVGNTHQPVPLTRDEVFSMLAPTLQQGESPKKKSKA 211
Query: 120 -----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+V F VGE V V+DGPF + + ++ E ++ V V IFGR TPVEL +NQV
Sbjct: 212 KPAAVTVDFTVGESVTVTDGPFETLPATISEINIEAQKLKVLVSIFGRETPVELGFNQVA 271
Query: 175 KI 176
KI
Sbjct: 272 KI 273
>gi|72383408|ref|YP_292763.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. NATL2A]
gi|72003258|gb|AAZ59060.1| transcription antitermination protein nusG [Prochlorococcus marinus
str. NATL2A]
Length = 222
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY +QV S+CEKK ++ R G+ + EI IP V ++K G + +E + FP
Sbjct: 39 RWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ E+ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + E G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QITK 220
>gi|124024994|ref|YP_001014110.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. NATL1A]
gi|123960062|gb|ABM74845.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. NATL1A]
Length = 222
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY +QV S+CEKK ++ R G+ + EI IP V ++K G + +E + FP
Sbjct: 39 RWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG+ P P++ E+ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + E G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QITK 220
>gi|119485148|ref|ZP_01619533.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106]
gi|119457376|gb|EAW38501.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106]
Length = 210
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP + +RK G + SE + FP
Sbjct: 16 RWYAVQVASGCEKRVKVNLEQRIKTLDVGDRILKVQIPQTPTIKLRKDGSRQQSEEKVFP 75
Query: 63 GYVLIKAVM-----------TDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTD 100
GYVL++ + D+ + +K+TP VI F+G + P P++
Sbjct: 76 GYVLVQMKLKWNGDFSHWDIDDEAWQVVKNTPHVINFVGAEQKRSSSRGRGHVKPLPLSS 135
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+E+E I Q + A PV V G+ + V GPF F G V V E++++ + IF
Sbjct: 136 AEVERIFRQTQQA--EPVVQVAMVAGDHIVVLSGPFKDFEGDVIEVSPERNKLKALLSIF 193
Query: 161 GRVTPVELAYNQVEK 175
GR TPVEL +NQVEK
Sbjct: 194 GRDTPVELEFNQVEK 208
>gi|293400421|ref|ZP_06644567.1| transcription termination/antitermination factor NusG
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306821|gb|EFE48064.1| transcription termination/antitermination factor NusG
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 183
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E + E++ R+ GL + I + E+ + + G++V + F G
Sbjct: 8 QWYVVNTYAGHENRVKENLERRVETMGLQDFLFRIVVAEEKEIEYKNGKEVEKTKNPFSG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ ++ +MTD+ ++ +++TP V GF+G+ G P PV + E+E I+ ++ +R V
Sbjct: 68 YLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEDEMEAILRRL-GMSERKV-Q 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VG+RV + G FA+ G V+ + E+ V +++FGR TP E++Y +EK+
Sbjct: 126 IDFAVGDRVRILSGAFANSEGTVEELHEDSQTAIVLLILFGRETPTEISYGDLEKV 181
>gi|41410209|ref|NP_963045.1| transcription antitermination protein NusG [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|118466107|ref|YP_883656.1| transcription antitermination protein NusG [Mycobacterium avium
104]
gi|254776958|ref|ZP_05218474.1| transcription antitermination protein NusG [Mycobacterium avium
subsp. avium ATCC 25291]
gi|41399043|gb|AAS06661.1| NusG [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167394|gb|ABK68291.1| transcription termination/antitermination factor NusG
[Mycobacterium avium 104]
Length = 256
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 101/190 (53%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 67 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 126
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ +TD + +++TP V GF+G PS ++ D ++ ++ +
Sbjct: 127 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGATKKVAKGAASTA 186
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 187 AAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 246
Query: 167 ELAYNQVEKI 176
EL ++QV K+
Sbjct: 247 ELTFSQVSKL 256
>gi|216263782|ref|ZP_03435776.1| transcription termination/antitermination factor NusG [Borrelia
afzelii ACA-1]
gi|215979826|gb|EEC20648.1| transcription termination/antitermination factor NusG [Borrelia
afzelii ACA-1]
Length = 184
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D V + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIK-VQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYGFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|15835611|ref|NP_300135.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae J138]
gi|16752968|ref|NP_445241.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae AR39]
gi|18203670|sp|Q9Z9A5|NUSG_CHLPN RecName: Full=Transcription antitermination protein nusG
gi|7189614|gb|AAF38507.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae AR39]
gi|8978449|dbj|BAA98286.1| transcriptional antitermination [Chlamydophila pneumoniae J138]
Length = 182
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T ++ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLVKMHLTDESWLYVKSTAGIVEFLGGG-VPVALSEDEVRSILTDIEEKKSGVVQKHQF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGTVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|224532126|ref|ZP_03672758.1| transcription termination/antitermination factor NusG [Borrelia
valaisiana VS116]
gi|224511591|gb|EEF81997.1| transcription termination/antitermination factor NusG [Borrelia
valaisiana VS116]
Length = 184
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGGVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D V + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIK-VQGVISFVGVNKGQKPIPINDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|163784527|ref|ZP_02179388.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
gi|159880203|gb|EDP73846.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
Length = 259
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
K+ E + FPGY+LIKA +TD++ IK TP +IGF+ G P P+T+ E++ ++ Q++
Sbjct: 137 KIVLENKIFPGYLLIKAKLTDELIDLIKKTPYIIGFVSAGGVPVPLTEEEVKRVLGQIQK 196
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ V + F G++V V +GPF +F G+V+ V EK ++ V + IFGR TPVEL ++Q
Sbjct: 197 GAPK-VKKLLFATGDKVRVIEGPFMNFTGVVEKVIPEKEKLIVSISIFGRSTPVELEFSQ 255
Query: 173 VEKI 176
VEKI
Sbjct: 256 VEKI 259
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
+WY + SN E +A E++ +L + + LV E+ +P+E V ++
Sbjct: 21 KWYALYTQSNLEVRAKENLLKQLELNNMKDLVDEVVVPAEEKVVIK 66
>gi|303232391|ref|ZP_07319083.1| transcription termination/antitermination factor NusG [Atopobium
vaginae PB189-T1-4]
gi|302481475|gb|EFL44543.1| transcription termination/antitermination factor NusG [Atopobium
vaginae PB189-T1-4]
Length = 181
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 6/182 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M WY+V Y+ E K + R+ GL+ + +I IP+E VV ++ G++ + E
Sbjct: 1 MAKHWYVVHTYAGYENKVKNDLQHRIETYGLEDQIVDIQIPTEEVVKIKNDGKRTSVEAN 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQ 115
FPGYVL++ + D + +++T V GF+G P+P+ SE +M + A Q
Sbjct: 61 AFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIEGKPTPLRRSEFNKMMRRANPTTPEAPQ 120
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R V + F EVG V V GP F G + V + +V V + IFGR TPVEL +Q+E
Sbjct: 121 RTVETEF-EVGMTVRVVRGPLEKFEGKITEVMTDAGKVKVSLTIFGRETPVELTMDQIEI 179
Query: 176 IV 177
IV
Sbjct: 180 IV 181
>gi|225552246|ref|ZP_03773186.1| transcription termination/antitermination factor NusG [Borrelia sp.
SV1]
gi|225371244|gb|EEH00674.1| transcription termination/antitermination factor NusG [Borrelia sp.
SV1]
Length = 184
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPVEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D V + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIK-VQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|225569799|ref|ZP_03778824.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM
15053]
gi|225161269|gb|EEG73888.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM
15053]
Length = 171
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKATQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+TD+E+ + + E V V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIRQENIV------VDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V G +A G+++ ++ K + + V +FGR TPVE+++ +V+K+
Sbjct: 119 EVGDTVQVIAGAWADTVGVIQALNIPKQSLTINVELFGRETPVEISFAEVKKM 171
>gi|302337466|ref|YP_003802672.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
gi|301634651|gb|ADK80078.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
Length = 184
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 12/186 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K + + +T++ +PSE VV V+ G+K + R+F
Sbjct: 1 MAKGWYVLHTYSGYENKIERFLRKMMGDGDFGDALTDVKVPSEEVVEVKDGKKKVTNRKF 60
Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGT--GENPSPVTDSEIEHIMN---QVE 111
PGY+L++ + D+ + IK V GF+G G P P++ E + I+ +++
Sbjct: 61 LPGYILLEMDLPDRGWKAVCSQIKKIQGVTGFVGAPVGAKPQPISSDEAKAILQKSGEIK 120
Query: 112 AA-VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A RP S F VGE V + DGPF +F G ++ V+ EK ++ V V IFGR TPVE+ +
Sbjct: 121 ADRTVRPRQS--FSVGEVVRIVDGPFDTFTGNIEEVNLEKGKLRVMVGIFGRSTPVEVDF 178
Query: 171 NQVEKI 176
QVEKI
Sbjct: 179 LQVEKI 184
>gi|291546353|emb|CBL19461.1| transcription antitermination protein nusG [Ruminococcus sp. SR1/5]
Length = 173
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G +++ FPG
Sbjct: 6 KWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQDVVEMKNGTSRQVQKKMFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +Q+P V F
Sbjct: 66 YVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------MPLGIQKPDIEVDF 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V V+ G + G++ ++ +K V + V +FGR TPVE+++ +++K
Sbjct: 120 AEGDMVVVTGGAWKDTAGVITGINMQKQTVTINVELFGRETPVEISFTEIKK 171
>gi|33239683|ref|NP_874625.1| transcription antitermination protein NusG [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237208|gb|AAP99277.1| Transcription antiterminator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 219
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY +QV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 36 RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 95
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + ++ TP VI F+G TG P P++ E+ I +
Sbjct: 96 GYVLVRMILDEDTMMAVRSTPNVINFVGAEDRRITGRGRGHIKPRPLSRQEVNRIFKR-- 153
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 154 AAEKKTVVKLDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 213
Query: 172 QVEK 175
Q+ K
Sbjct: 214 QISK 217
>gi|15594739|ref|NP_212528.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
B31]
gi|195941256|ref|ZP_03086638.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
80a]
gi|218249824|ref|YP_002374911.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi ZS7]
gi|223888778|ref|ZP_03623369.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 64b]
gi|224533004|ref|ZP_03673611.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi WI91-23]
gi|225549179|ref|ZP_03770154.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 94a]
gi|226320543|ref|ZP_03796105.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 29805]
gi|226321709|ref|ZP_03797235.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi Bol26]
gi|3914176|sp|O51355|NUSG_BORBU RecName: Full=Transcription antitermination protein nusG
gi|2688303|gb|AAC66771.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
B31]
gi|218165012|gb|ACK75073.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi ZS7]
gi|223885594|gb|EEF56693.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 64b]
gi|224512064|gb|EEF82458.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi WI91-23]
gi|225370405|gb|EEG99843.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 94a]
gi|226232898|gb|EEH31651.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi Bol26]
gi|226234055|gb|EEH32774.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 29805]
gi|312149289|gb|ADQ29360.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi N40]
Length = 184
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D + + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIK-VQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|169350901|ref|ZP_02867839.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552]
gi|169292487|gb|EDS74620.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552]
Length = 185
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+ + FPG
Sbjct: 10 QWYVVNTYSGHENKVKENLEKRIESMGLQDVLFQIVIPEHVETEIKDGKKITKTKNMFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++T V GF+G+ G P P+ SE++ I+ ++ +
Sbjct: 70 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILEKM--GLSSTKVE 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+ G+ V V DGPF G V+++D EK V V G +T V++ Q++K+
Sbjct: 128 VDFQEGDEVDVIDGPFVGKRGKVESIDTEKEIAKVLVDFLGNLTQVDIELTQLKKV 183
>gi|323141142|ref|ZP_08076045.1| transcription termination/antitermination factor NusG
[Phascolarctobacterium sp. YIT 12067]
gi|322414408|gb|EFY05224.1| transcription termination/antitermination factor NusG
[Phascolarctobacterium sp. YIT 12067]
Length = 186
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 105/176 (59%), Gaps = 4/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY++ YS E K ++ ++ G+++ + I IP+E+ V + G+K E + FPG
Sbjct: 10 WYVIHTYSGYENKVRANLERKVHSLGMENEIFRIEIPTEKEVEITSDGKKKVVEHKVFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPV--SS 120
YVL++ ++ ++ ++ +++T V GF+G+ +P+P+T E+ IM + V+ V +
Sbjct: 70 YVLVEMIVNERNWYAVRNTAGVTGFVGSDSTHPTPLTAEEVRQIMPSMGMEVEETVKPAK 129
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++ +RV + PF F G + ++EEK ++ V V I GR TPVE+ + QVE+I
Sbjct: 130 IDFQLHQRVRIKTAPFMDFEGTISEINEEKGKLKVLVDIMGRETPVEIDFTQVEEI 185
>gi|313900413|ref|ZP_07833906.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
gi|312954475|gb|EFR36150.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
Length = 183
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E + E++ R+ GL + + + E+ + + G++V F G
Sbjct: 8 QWYVVNTYAGHENRVKENLLRRVESMGLQDYLFRVIVAEEKEIEYKNGKEVEKTTNLFSG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ ++ +MTD+ ++ +++TP V GF+G+ G P PV + E+E I+ ++ +R V
Sbjct: 68 YLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMESILRRL-GMSERKV-Q 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VG+RV + G FA+ G V+ + E+ V ++FGR TP E+ Y ++EK+
Sbjct: 126 IDFAVGDRVRILSGAFANVEGTVEELHEDSQTAVVLTILFGRETPTEIGYGELEKV 181
>gi|225420372|ref|ZP_03762675.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme
DSM 15981]
gi|225040991|gb|EEG51237.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme
DSM 15981]
Length = 171
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K I + L + E+++P VV ++ G + ++++ FPG
Sbjct: 5 HWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+T+ E++ + + E V V F
Sbjct: 65 YVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMKGLGFRHEDVV------VDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V++G + G +K +++ K V + V +FGR TPVEL + +V+K+
Sbjct: 119 EVGDTVVVTNGAWKDTVGAIKAINDGKKTVTINVEMFGRETPVELGFAEVKKM 171
>gi|325678944|ref|ZP_08158542.1| transcription termination/antitermination factor NusG [Ruminococcus
albus 8]
gi|324109448|gb|EGC03666.1| transcription termination/antitermination factor NusG [Ruminococcus
albus 8]
Length = 175
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++I + L L+ E+ IP E V ++ + V +E++ FP
Sbjct: 6 KWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVKIPMETVTEIKGTKTVEAEKKLFPS 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K V+TD ++ +++T V GF+G G P P++D E+E + V+ Q +++
Sbjct: 66 YVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDKEVEAL--GVDTGTQTVQTNI-- 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVG+ V + G F +G V +D E + V V +FGR T V L Q+ K
Sbjct: 122 EVGDDVVMVGGSFDGMSGTVTALDLENAAADVTVSMFGRETSVTLPLTQLRK 173
>gi|294791363|ref|ZP_06756520.1| transcription termination/antitermination factor NusG [Scardovia
inopinata F0304]
gi|294457834|gb|EFG26188.1| transcription termination/antitermination factor NusG [Scardovia
inopinata F0304]
Length = 326
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 16/187 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R+ GL+ V ++ +P E V KG+K+ S R P
Sbjct: 141 KWYVLHTYSGYEKRVKANIESRVQNFGLEDTVFQVEVPMEEVEKHTEKGKKIISRVR-IP 199
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQ 109
GYVLI+ D I++T V GF+G+ P++ E+ +M ++
Sbjct: 200 GYVLIRMWPDDDARRIIRETEGVTGFVGSNREAVPLSRQEVVDMMAPMIRSQALKESGDK 259
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+AA QR + V FE+GE V V+DGPFA+ G++ + ++ V V IFGR TPVEL
Sbjct: 260 PKAARQRKI-EVSFEMGETVTVTDGPFATMTGVISELQPTTQKLTVLVNIFGRDTPVELG 318
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 319 FDQVEKL 325
>gi|308235430|ref|ZP_07666167.1| transcription antiterminator [Gardnerella vaginalis ATCC 14018]
gi|311114211|ref|YP_003985432.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis ATCC 14019]
gi|310945705|gb|ADP38409.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis ATCC 14019]
Length = 284
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R+ GL+ + +I +P E V KG+KV + R P
Sbjct: 99 KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTDKGKKVITRVRV-P 157
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G + P+P++ E+ +M ++ A +
Sbjct: 158 GYVLIRMWPDENARRIVRETEGVTGFVGPSKEPAPLSRKEVIDMMAPMIASEALKKAGDK 217
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V ++VG++V V+DGPFA+ +V +VD ++ V V IFGR TPVEL +
Sbjct: 218 PAAARKRTVEVAYKVGDQVTVTDGPFATMAAVVSDVDPTTQKLTVLVSIFGRETPVELGF 277
Query: 171 NQVEKIV 177
NQVE IV
Sbjct: 278 NQVEPIV 284
>gi|227487148|ref|ZP_03917464.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227541685|ref|ZP_03971734.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227092806|gb|EEI28118.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227182500|gb|EEI63472.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 255
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 19/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R +D + +I +P E V +R G+K +++ PGY
Sbjct: 66 WYIIQTYSGYENKVKTNLTQRAENLEVDEYIHDIVVPVEEVTEMRDGKKKIVKKKLLPGY 125
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI-EHIMNQ-------------- 109
VL++ M D V+ ++ TP V F+G +PV ++ + +M Q
Sbjct: 126 VLVRMEMNDSVWSVVRGTPGVTSFVGNEGQATPVKPKDVAKFLMPQQAVEEQAADAEGDT 185
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
AA ++PV V FEVGE V + G A+ + + ++D + ++H V IFGR TPV
Sbjct: 186 VVAAPAAEKKPV-EVDFEVGESVTILSGALATVSATISDIDRDSGKLHALVSIFGRDTPV 244
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 245 ELTFDQVEKI 254
>gi|89898122|ref|YP_515232.1| transcription antitermination protein NusG [Chlamydophila felis
Fe/C-56]
gi|89331494|dbj|BAE81087.1| transcription antitermination [Chlamydophila felis Fe/C-56]
Length = 182
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EK +++ SG+ + EI +P E V+ V++G E+ +PG
Sbjct: 3 KWYVVQVFTAQEKTVKKALEDFKESSGMTDFIQEIVLPIENVMEVKRGEHKIVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLGGG-VPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
++G RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DIGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|216264305|ref|ZP_03436297.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 156a]
gi|221217654|ref|ZP_03589122.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 72a]
gi|225550080|ref|ZP_03771040.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 118a]
gi|215980778|gb|EEC21585.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 156a]
gi|221192331|gb|EEE18550.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 72a]
gi|225369192|gb|EEG98645.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 118a]
gi|312148158|gb|ADQ30817.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi JD1]
Length = 184
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D + + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIK-VQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEKI 176
+EKI
Sbjct: 180 HIEKI 184
>gi|291549807|emb|CBL26069.1| transcription antitermination protein nusG [Ruminococcus torques
L2-14]
Length = 172
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P E V +R G + +R+ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIETRHLEDQILEVRVPLEEVPEIRNGVEKVVQRKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I +M D ++ +++T V GF+G G P P+ +SE+E++ +++ +
Sbjct: 65 YVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENL------GIKQDEVILDL 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V V G + G V+ ++E+K + + V +FGR TPVEL +++V+K+
Sbjct: 119 EIGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171
>gi|294101324|ref|YP_003553182.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261]
gi|293616304|gb|ADE56458.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261]
Length = 181
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 98/173 (56%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIVQ Y+ E + ++ R++ G++ + + +P E V V+ G+ R+ +P
Sbjct: 9 RWYIVQTYAGYENRVKANLEQRIATMGMEEEIFSVLVPVEERVFVKDGKSKKVTRKLYPS 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D+ ++ ++ TP V GF+G G +P P+++ EI+ IM+++ +P +
Sbjct: 69 YVLVEMKLNDQSWYVVRHTPGVTGFVGAGNHPIPLSEKEIKEIMSKIGKDHAKPKIEMNL 128
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V GPF G V + EK +V + +FGR T VE Y +++K+
Sbjct: 129 KPGDIVKVKSGPFEGQVGPVVEIVPEKGKVKFTITVFGRETVVETDYTELDKL 181
>gi|197303970|ref|ZP_03169002.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC
29176]
gi|197296938|gb|EDY31506.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC
29176]
Length = 172
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P E V +R G + +R+ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEEVTELRNGVEKAVQRKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I +M D ++ +++T V GF+G G P P+ +SE+E++ + + +
Sbjct: 65 YVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENL------GINKEDVIMDL 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V G + G V+ ++E+K + + V +FGR TPVEL +++V+K+
Sbjct: 119 AVGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171
>gi|305679974|ref|ZP_07402784.1| transcription termination/antitermination factor NusG
[Corynebacterium matruchotii ATCC 14266]
gi|305660594|gb|EFM50091.1| transcription termination/antitermination factor NusG
[Corynebacterium matruchotii ATCC 14266]
Length = 291
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 24/197 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R+ ++ + E+ +P E+ + +R G++ +R+ PG
Sbjct: 94 QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEAA- 113
YVL++ + D + +++TP V F+G N +PV ++ + +AA
Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213
Query: 114 --------------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ +P V +EVGE V + +GP AS + + +D E S+V V V I
Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273
Query: 160 FGRVTPVELAYNQVEKI 176
FGR TPV+L ++Q++KI
Sbjct: 274 FGRETPVDLTFDQIKKI 290
>gi|225020307|ref|ZP_03709499.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii
ATCC 33806]
gi|224947051|gb|EEG28260.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii
ATCC 33806]
Length = 291
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 24/197 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R+ ++ + E+ +P E+ + +R G++ +R+ PG
Sbjct: 94 QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEAA- 113
YVL++ + D + +++TP V F+G N +PV ++ + +AA
Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213
Query: 114 --------------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ +P V +EVGE V + +GP AS + + +D E S+V V V I
Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273
Query: 160 FGRVTPVELAYNQVEKI 176
FGR TPV+L ++Q++KI
Sbjct: 274 FGRETPVDLTFDQIKKI 290
>gi|119025264|ref|YP_909109.1| transcription antitermination protein nusG [Bifidobacterium
adolescentis ATCC 15703]
gi|118764848|dbj|BAF39027.1| transcription antitermination protein nusG [Bifidobacterium
adolescentis ATCC 15703]
Length = 274
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 89 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVR-VP 147
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + + +++T V GF+G ++P+P+T E+ +M ++AA +
Sbjct: 148 GYVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDK 207
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + G++V V+DGPF + +V VD ++ V V IFGR TPVEL +
Sbjct: 208 PAAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGF 267
Query: 171 NQVEKIV 177
NQVEK+
Sbjct: 268 NQVEKLA 274
>gi|172056126|ref|YP_001812586.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15]
gi|171988647|gb|ACB59569.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15]
Length = 183
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 10/184 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV---VSVRKGRKVNSE 57
M +W++VQ YS E ++ R+ +D + + +P E V V+ +KG E
Sbjct: 1 MDKQWFVVQTYSGFENNVKANLERRIESMNMDEKIFRVLVPIETVQEEVTNKKGETKIKE 60
Query: 58 R--RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112
R + FPGYVL++ VMTD ++ +++TP V GFLG+ G P+P+ E E+I+ +
Sbjct: 61 REIKIFPGYVLVEMVMTDDSWYVVRNTPNVTGFLGSVGGGSKPTPLLPEEAENILGSMGL 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ S F +G+ V + +G FA+ G ++ ++ E ++ V V +FGR T VEL ++Q
Sbjct: 121 VDMK--SRYDFTMGQIVRIKEGVFANLEGTIEELETEAEKMKVSVDMFGRETKVELDFSQ 178
Query: 173 VEKI 176
VEKI
Sbjct: 179 VEKI 182
>gi|260588883|ref|ZP_05854796.1| transcription termination/antitermination factor NusG [Blautia
hansenii DSM 20583]
gi|331083427|ref|ZP_08332539.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 6_1_63FAA]
gi|260540662|gb|EEX21231.1| transcription termination/antitermination factor NusG [Blautia
hansenii DSM 20583]
gi|330404120|gb|EGG83668.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 6_1_63FAA]
Length = 173
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K +I + L+ + E+ +P + VV ++ G K +++ FPG
Sbjct: 5 NWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGEKKQVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+T+ EIE + V+ + F
Sbjct: 65 YVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEGEIEALGISFTGDVE-----IDF 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V+ G + G+V++++E K V + V +FGR TPV+L++ +V+ +
Sbjct: 120 TEGDSVVVTGGVWKDTVGVVQSINEAKQIVTINVELFGRETPVDLSFAEVKSL 172
>gi|160881812|ref|YP_001560780.1| NusG antitermination factor [Clostridium phytofermentans ISDg]
gi|160430478|gb|ABX44041.1| NusG antitermination factor [Clostridium phytofermentans ISDg]
Length = 172
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K +I + L + E+++P + V+ V+ G K +++ FPG
Sbjct: 5 NWYVVHTYSGYENKVKANIEKTIENRKLQDQILEVSVPLQDVIEVKNGVKKKVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ +M D ++ +++T V GF+G G P P+TD E++ + +++ + F
Sbjct: 65 YVLLNMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDFEMKSM------GIKKDEMVIDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
VG+ V V G + + G++K ++E K V + + +FGR TPVE+++ V
Sbjct: 119 AVGDTVTVVSGVWENTQGVIKAINEHKQIVTINIDMFGRETPVEISFTDV 168
>gi|325261295|ref|ZP_08128033.1| transcription termination/antitermination factor NusG [Clostridium
sp. D5]
gi|324032749|gb|EGB94026.1| transcription termination/antitermination factor NusG [Clostridium
sp. D5]
Length = 172
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + V+ ++ G + S+++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMQEVIELKNGVQKASQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I +M D ++ +++T V GF+G G P P+ + E+ + + E + V F
Sbjct: 65 YVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMNRLGIRQENVI------VEF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V G + G++++++E+K + + V +FGR TPVEL + +V K+
Sbjct: 119 AVGDAVTVLSGAWEGTVGVIQSLNEQKQSLSINVELFGRETPVELGFAEVRKM 171
>gi|116491404|ref|YP_810948.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1]
gi|118586217|ref|ZP_01543682.1| transcriptional antitermination factor [Oenococcus oeni ATCC
BAA-1163]
gi|290890972|ref|ZP_06554036.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429]
gi|116092129|gb|ABJ57283.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1]
gi|118433346|gb|EAV40047.1| transcriptional antitermination factor [Oenococcus oeni ATCC
BAA-1163]
gi|290479371|gb|EFD88031.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429]
Length = 185
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRFFPG 63
WY+V YS E + +++ R G+ + ++ +P +E++ + G FPG
Sbjct: 10 WYVVHTYSGYENRVKQNLEQRRESMGMTDFIFQVIVPENEKIKTGPNGELKKVVENDFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ ++ +++TP V GFLG+ G P+PVT EI+ IM+++ ++R V
Sbjct: 70 YVLVEMVMTDQSWYVVRNTPGVTGFLGSHGQGSKPNPVTKDEIDRIMHRM-GLIERKVDD 128
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VGE V + G G + +D EK V V V +FGR T E+ +N ++KI
Sbjct: 129 LNVKVGETVSIIGGAMNGMEGKITAIDREKQEVQVLVDMFGRETETEVPFNDIDKI 184
>gi|257069526|ref|YP_003155781.1| transcription antitermination protein nusG [Brachybacterium faecium
DSM 4810]
gi|256560344|gb|ACU86191.1| transcription antitermination protein nusG [Brachybacterium faecium
DSM 4810]
Length = 301
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E + + R ++ + E+ +P E V+ G+K R PGY
Sbjct: 119 WYVIHSYSGHENRVKTQLATRTETQDMEEYIFEVQVPMEDATEVKNGQKKIVRRVRVPGY 178
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------NQ 109
VL++ +T + + ++DTP V GF+G +P+P++ EI ++ ++
Sbjct: 179 VLVRMDLTTESWRVVRDTPGVTGFVGNATDPTPLSFDEIYSLLAPSVGLPEKKRSSGGSK 238
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
AA + P F+VGE V V DGPF + + + E ++ V V IFGR TPVELA
Sbjct: 239 AAAAQKVP----DFQVGESVTVMDGPFETMPATISEIHSEAQKLQVLVSIFGRETPVELA 294
Query: 170 YNQVEKI 176
++QV KI
Sbjct: 295 FDQVAKI 301
>gi|154486659|ref|ZP_02028066.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis
L2-32]
gi|154084522|gb|EDN83567.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis
L2-32]
Length = 274
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 89 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVR-VP 147
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + + +++T V GF+G ++P+P+T E+ +M ++AA +
Sbjct: 148 GYVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDK 207
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + G++V V+DGPF + +V VD ++ V V IFGR TPVEL +
Sbjct: 208 PAAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGF 267
Query: 171 NQVEKIV 177
NQVEK+
Sbjct: 268 NQVEKLA 274
>gi|33860765|ref|NP_892326.1| transcription antitermination protein NusG [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633707|emb|CAE18664.1| transcription antitermination protein, NusG [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 203
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + FP
Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR-- 137
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 138 ASEKKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197
Query: 172 QVEK 175
Q+ K
Sbjct: 198 QINK 201
>gi|123965469|ref|YP_001010550.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9515]
gi|123199835|gb|ABM71443.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9515]
Length = 203
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + FP
Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR-- 137
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 138 ASEKKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197
Query: 172 QVEK 175
Q+ K
Sbjct: 198 QINK 201
>gi|268608956|ref|ZP_06142683.1| transcription antitermination protein NusG [Ruminococcus
flavefaciens FD-1]
Length = 175
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K + I + L L+ E+ +P+E V + G+ ER+ +PG
Sbjct: 6 KWYVVHTYSGYENKVAKDIEKTVENRKLHELIQEVRVPTETVTEITDGKTKEVERKTYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLIK V+ D ++ +++T GF+G P+P++++E++ + ++V+ V F
Sbjct: 66 YVLIKMVVNDDTWYLVRNTRGCTGFVGPASEPTPLSEAEVKQLFGVDVSSVE-----VNF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+VG+RV +S F G+V+N++ E V + V +FGR TP L +QV
Sbjct: 121 KVGDRVQISGTAMDGFIGVVQNINLEDRSVDLLVSMFGRETPTTLPISQV 170
>gi|78778593|ref|YP_396705.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9312]
gi|78712092|gb|ABB49269.1| transcription antitermination protein nusG [Prochlorococcus marinus
str. MIT 9312]
Length = 203
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + FP
Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR-- 137
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 138 ASEKKAVIKLDIEEKDRILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197
Query: 172 QVEK 175
Q+ K
Sbjct: 198 QINK 201
>gi|269977529|ref|ZP_06184498.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris 28-1]
gi|269934284|gb|EEZ90849.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris 28-1]
Length = 264
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P
Sbjct: 74 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 133
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++
Sbjct: 134 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 193
Query: 111 -EAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ AV + VS+ FEVG+ V ++ GPF + + + + S++ V V IF R TPV
Sbjct: 194 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 253
Query: 167 ELAYNQVEKIV 177
EL ++QVEKI+
Sbjct: 254 ELNFDQVEKIL 264
>gi|331091902|ref|ZP_08340734.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 2_1_46FAA]
gi|330402801|gb|EGG82368.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 2_1_46FAA]
Length = 171
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKAVSKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I +M D ++ +++T V GF+G G P P+TD E+ + +Q+ V F
Sbjct: 65 YVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPL------GIQKEEIVVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V+ G + G+++ ++ +K + + V +FGR TPVE+++ +V+K+
Sbjct: 119 EEGDTVTVTAGAWEGTVGVIQAMNAQKQSLTINVELFGRETPVEISFKEVKKM 171
>gi|317125904|ref|YP_004100016.1| transcription antitermination protein nusG [Intrasporangium calvum
DSM 43043]
gi|315589992|gb|ADU49289.1| transcription antitermination protein nusG [Intrasporangium calvum
DSM 43043]
Length = 292
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 12/184 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V Y+ E + ++ R+ ++ + EI +P E V ++ G+K R PGY
Sbjct: 109 WFVVHSYAGYENRVKANLETRIQTLNMEDYIFEIEVPMEEVTEIKNGQKKLVRRVRMPGY 168
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112
VL++ +TD+ + ++ TP V GF+G P P++ E+ ++ +
Sbjct: 169 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSIDEVFTMLAPNLEVPTEGGSGAGRS 228
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A ++P + V FEVGE V V +GPF + + ++ + ++ V V IFGR TPVEL++ Q
Sbjct: 229 AAKKPAAVVDFEVGESVTVMEGPFETLPATISEINSDTQKLKVLVSIFGRETPVELSFGQ 288
Query: 173 VEKI 176
V KI
Sbjct: 289 VAKI 292
>gi|229917372|ref|YP_002886018.1| NusG antitermination factor [Exiguobacterium sp. AT1b]
gi|229468801|gb|ACQ70573.1| NusG antitermination factor [Exiguobacterium sp. AT1b]
Length = 183
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV---VSVRKGRKVNSE 57
M +W++VQ YS E E++ R+ ++ + + +P+E V+++ G K E
Sbjct: 1 MEKQWFVVQTYSGFENNVKENLERRIGSMNMEDKIFRVLVPTETTQEEVTLKSGEKKIKE 60
Query: 58 R--RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112
R + FPGYV ++ VMTD ++ +++TP V GFLG+ G P P+ E+ ++++Q+
Sbjct: 61 REVKSFPGYVFVEMVMTDDSWYVVRNTPNVTGFLGSTGGGAKPIPLQPDEVTNVLSQMGL 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + +E+G+ V V +G F +F G + ++ +K ++ V V +FGR T +EL + Q
Sbjct: 121 IEKKDRYN--YELGDLVRVKEGAFENFEGTIDEIEADKEKLKVVVDMFGRETKIELDFEQ 178
Query: 173 VEKI 176
V+KI
Sbjct: 179 VQKI 182
>gi|323486268|ref|ZP_08091595.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14163]
gi|323693941|ref|ZP_08108127.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14673]
gi|323400413|gb|EGA92784.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14163]
gi|323501987|gb|EGB17863.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14673]
Length = 171
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K I + L + E+++P + V+ ++ G + ++ FPG
Sbjct: 5 NWYVVHTYSGYENKVKVDIEKTIENRKLQDQILEVSVPMQDVIELKNGAQKQVAKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+T++E++ + + V V F
Sbjct: 65 YVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMDALGFREAGLV------VEF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V+ G + G++K+++E K + + V +FGR TPVEL + +V+K+
Sbjct: 119 EEGDTVVVTAGAWKDTVGVIKSINEGKQTLTINVEMFGRETPVELNFTEVKKM 171
>gi|299143702|ref|ZP_07036782.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518187|gb|EFI41926.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 176
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ + ++ L+ +I +P E V ++G K ER+ FP
Sbjct: 9 KWYVIHTYSGHENKVKANMEAMVVNRNMEDLIFDIQVPIEEYVENKEGSKKVKERKLFPS 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
YVL+K +M D+ ++ +++T V GF+G G P P++D E+ + V +F
Sbjct: 69 YVLVKMIMNDESWYLVRNTRGVTGFVGPGSKPVPLSDEEV------ITLGVCDN-KEIFG 121
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+EVGE V V GPF F G + + + EK ++ V V +FGR T VEL +NQV
Sbjct: 122 EYEVGETVKVISGPFNDFVGKIDSCNYEKKKIKVSVSMFGRDTLVELDFNQV 173
>gi|291533635|emb|CBL06748.1| transcription antitermination protein nusG [Megamonas hypermegale
ART12/1]
Length = 175
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++ YS E K ++ ++ G++ + + +P E+ R G++ ER+
Sbjct: 3 LEKKWYVIHTYSGYENKVKANLERKIHSMGMEDKIFNVIVPVEKETEKRNGKEKVVERKI 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++ ++ ++ +++TP V GF+G+ P P+T+ E I+ + + +P +
Sbjct: 63 FPGYVLLEMIVDERSWYIVRNTPGVTGFVGSNTKPVPLTEEEANRILKAM--GMDKP-TE 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG++V ++ G F +F + +D KS++ V +FGR T +E ++Q+EKI
Sbjct: 120 LDVEVGDQVNITSGAFENFVATITEIDYSKSKIKGVVDMFGRETAIEADFDQIEKI 175
>gi|123967760|ref|YP_001008618.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. AS9601]
gi|123197870|gb|ABM69511.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. AS9601]
Length = 203
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + FP
Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR-- 137
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 138 ASEKKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197
Query: 172 QVEK 175
Q+ K
Sbjct: 198 QINK 201
>gi|329944007|ref|ZP_08292275.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 170 str. F0386]
gi|328531208|gb|EGF58054.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 170 str. F0386]
Length = 321
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 99/202 (49%), Gaps = 29/202 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF-FP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G K R P
Sbjct: 120 QWYVLHTYSGYERRVATDIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 179
Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--------EHIMNQ 109
GYV ++ + +DKV+ TIKDTP V GF+G NP P+T E E I +
Sbjct: 180 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTPEEIAAK 239
Query: 110 VEAAVQRP---------------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
AAV+ V V FEVGE V V+DGPF S + + E ++
Sbjct: 240 ETAAVEATAPETGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQ 299
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + +FGR TP EL++ QV KI
Sbjct: 300 VLISLFGRDTPAELSFTQVAKI 321
>gi|227874727|ref|ZP_03992882.1| transcription antitermination protein nusG [Mobiluncus mulieris
ATCC 35243]
gi|306818026|ref|ZP_07451759.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris ATCC 35239]
gi|227844693|gb|EEJ54847.1| transcription antitermination protein nusG [Mobiluncus mulieris
ATCC 35243]
gi|304649207|gb|EFM46499.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris ATCC 35239]
Length = 280
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P
Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++
Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209
Query: 111 -EAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ AV + VS+ FEVG+ V ++ GPF + + + + S++ V V IF R TPV
Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269
Query: 167 ELAYNQVEKIV 177
EL ++QVEKI+
Sbjct: 270 ELNFDQVEKIL 280
>gi|126695563|ref|YP_001090449.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9301]
gi|126542606|gb|ABO16848.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9301]
Length = 203
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + FP
Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR-- 137
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 138 ASEKKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197
Query: 172 QVEK 175
Q+ K
Sbjct: 198 QINK 201
>gi|307701857|ref|ZP_07638870.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris FB024-16]
gi|307612972|gb|EFN92228.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris FB024-16]
Length = 280
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P
Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++
Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209
Query: 111 -EAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ AV + VS+ FEVG+ V ++ GPF + + + + S++ V V IF R TPV
Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269
Query: 167 ELAYNQVEKIV 177
EL ++QVEKI+
Sbjct: 270 ELNFDQVEKIL 280
>gi|183221359|ref|YP_001839355.1| transcription antitermination protein NusG [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911452|ref|YP_001963007.1| transcription antiterminator [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776128|gb|ABZ94429.1| Transcription antiterminator [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779781|gb|ABZ98079.1| Transcription antitermination protein NusG [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 184
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++Q YS E K +I + + L+ + + IPS V ++ G+K ++++
Sbjct: 5 LDKKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVTKKKL 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQV----EAAVQ 115
PGYVL++ MTD + I++ P V F+ G G+ P P++ EI+++ + V V
Sbjct: 65 MPGYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVESEEVS 124
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
RP F+VGE + + DGPFA+F G+V + +K R+ V V IFGR TPVEL Y QV+
Sbjct: 125 RP--RFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQVK 181
>gi|302553509|ref|ZP_07305851.1| transcription termination/antitermination factor NusG [Streptomyces
viridochromogenes DSM 40736]
gi|302471127|gb|EFL34220.1| transcription termination/antitermination factor NusG [Streptomyces
viridochromogenes DSM 40736]
Length = 298
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 102/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N ++ PGY
Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNIKQNKLPGY 170
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 231 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 290
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 291 SFDQIQK 297
>gi|313115119|ref|ZP_07800606.1| transcription termination/antitermination factor NusG
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622559|gb|EFQ06027.1| transcription termination/antitermination factor NusG
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 177
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY+V YS E K + + L L+ +I +P E V + K G++ E + FPG
Sbjct: 10 WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VM D ++ +++T GF+G P P++ E+E + VE A V F
Sbjct: 70 YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM--GVEKAAPLAVD---F 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 125 NVGDTVQITAGPLEGFMGLVEEIDTENFKVKLKVNMFGRETPAEVEIGQVE 175
>gi|15828020|ref|NP_302283.1| transcription antitermination protein NusG [Mycobacterium leprae
TN]
gi|221230497|ref|YP_002503913.1| transcription antitermination protein NusG [Mycobacterium leprae
Br4923]
gi|18202753|sp|Q9CBK0|NUSG_MYCLE RecName: Full=Transcription antitermination protein nusG
gi|13093573|emb|CAC30860.1| transcription antitermination protein nusG [Mycobacterium leprae]
gi|219933604|emb|CAR72002.1| transcription antitermination protein nusG [Mycobacterium leprae
Br4923]
Length = 228
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 39 WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEA----------- 112
+L++ +TD + +++TP V GF+G PS + D ++ ++ A
Sbjct: 99 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPSGSAKKDAKGAVSTA 158
Query: 113 ------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++R + V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 159 AAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 218
Query: 167 ELAYNQVEKI 176
EL ++QV KI
Sbjct: 219 ELTFSQVSKI 228
>gi|86608696|ref|YP_477458.1| transcription antitermination protein NusG [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557238|gb|ABD02195.1| transcription termination/antitermination factor NusG
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 221
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWY VQV S CE K ++ R + + + E+ IP + R G++ E + FP
Sbjct: 38 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 97
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ M D + +K TP VI F+GT E P P++ SE++ I + VE
Sbjct: 98 GYVLVRMDMNDDTWMVVKTTPNVINFVGTEEKRAYGRGRGHVTPRPLSQSEVQRIFSSVE 157
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V+ + G+R+ V GPF F G V V E+ ++ + IFGR TPVEL +
Sbjct: 158 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVEVSPERGKLKALISIFGRDTPVELEFG 215
Query: 172 QVEKIV 177
QV K V
Sbjct: 216 QVRKEV 221
>gi|255282704|ref|ZP_05347259.1| transcription termination/antitermination factor NusG [Bryantella
formatexigens DSM 14469]
gi|255266725|gb|EET59930.1| transcription termination/antitermination factor NusG [Bryantella
formatexigens DSM 14469]
Length = 171
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L+ + E+ +P E VV V+ G +++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVSKTVQKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ VM D ++ +++T V GF+G G P P+T++E+ + +Q V E
Sbjct: 66 VLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPL------GIQAKNVMVDIE 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V G + G+V++++E K V + V +FGR TPVE+ + +++K+
Sbjct: 120 VGDTVSVIGGIWKDTVGVVQSINESKQIVTINVELFGRETPVEIGFAEIQKM 171
>gi|157412563|ref|YP_001483429.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9215]
gi|254525769|ref|ZP_05137821.1| transcription termination/antitermination factor NusG
[Prochlorococcus marinus str. MIT 9202]
gi|157387138|gb|ABV49843.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9215]
gi|221537193|gb|EEE39646.1| transcription termination/antitermination factor NusG
[Prochlorococcus marinus str. MIT 9202]
Length = 203
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY +QV S+CEKK ++ R G+++ + EI IP + ++K G + +E + FP
Sbjct: 20 RWYAIQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR-- 137
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 138 ASEKKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197
Query: 172 QVEK 175
Q+ K
Sbjct: 198 QISK 201
>gi|167758528|ref|ZP_02430655.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704]
gi|167663724|gb|EDS07854.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704]
Length = 171
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGVQKATQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI +M D ++ +++T V GF+G G P P+TD+E+ + + E V V F
Sbjct: 65 YVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIRQENIV------VDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V G +A G++++++ +K + + V +FGR TPVE+ + +V+K+
Sbjct: 119 QEGDTVQVIAGAWADTVGVIQSMNIQKQSLTINVELFGRETPVEIGFAEVKKM 171
>gi|260655340|ref|ZP_05860828.1| transcription termination/antitermination factor NusG [Jonquetella
anthropi E3_33 E1]
gi|260629788|gb|EEX47982.1| transcription termination/antitermination factor NusG [Jonquetella
anthropi E3_33 E1]
Length = 185
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ VQ YS E K ++ R++ + + + +P E VV V+ G+ R+ FP
Sbjct: 12 QWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPS 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVF 122
YVL++ +M D+ ++ ++ TP V GF+G G +P P++D E+ ++ +V E + P V
Sbjct: 72 YVLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVE 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V GPF G+V +V+ +V + +FGR T E+ + ++E++
Sbjct: 132 CQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185
>gi|282882465|ref|ZP_06291086.1| transcription termination/antitermination factor NusG
[Peptoniphilus lacrimalis 315-B]
gi|300814586|ref|ZP_07094837.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297607|gb|EFA90082.1| transcription termination/antitermination factor NusG
[Peptoniphilus lacrimalis 315-B]
gi|300511205|gb|EFK38454.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 179
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K +++ ++ ++ L+ +I +P E V + G ER+ FP
Sbjct: 12 KWYVIHTYSGYENKVKDTMEAMVANRKMEDLILDIRVPMENYVETKDGLSKAKERKMFPS 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M D+ ++ +++T V GF+G P P+++ E+ + +
Sbjct: 72 YVLVKMIMNDETWYLVRNTRGVTGFVGPASKPVPLSEEEVLLL-----GVTDNKELFGNY 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E+GE V V GPF GI+ + + EK +V V + +FGR T VEL +NQ+ K
Sbjct: 127 EIGETVRVISGPFNELVGIIDSFNYEKGKVKVSISMFGRDTLVELDFNQIIK 178
>gi|159902764|ref|YP_001550108.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9211]
gi|159887940|gb|ABX08154.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9211]
Length = 219
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 36 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 95
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG------TGE-----NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G TG P P++ E+ I +
Sbjct: 96 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRPTGRGRGHIKPRPLSREEVNRIFKRT- 154
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ ++ V + G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 155 -SEKKTVVKLDLSEGDQILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 213
Query: 172 QVEK 175
Q+ K
Sbjct: 214 QINK 217
>gi|104774463|ref|YP_619443.1| transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116514567|ref|YP_813473.1| transcription antiterminator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103423544|emb|CAI98456.1| Transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093882|gb|ABJ59035.1| transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 184
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 4/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E + +G+K + FPG
Sbjct: 8 QWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ E V
Sbjct: 68 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKV-D 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V +++G F G + + ++K ++ + + +FG T EL ++QV+K+
Sbjct: 127 YDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182
>gi|269796269|ref|YP_003315724.1| transcription antitermination protein nusG [Sanguibacter keddieii
DSM 10542]
gi|269098454|gb|ACZ22890.1| transcription antitermination protein nusG [Sanguibacter keddieii
DSM 10542]
Length = 273
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + +I +P E V ++ +K R PGY
Sbjct: 93 WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKIVRRVRIPGY 152
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI-----EHIMNQVEAAVQ---- 115
VL++ +TD+ + ++ TP V GF+G P P+T +E+ I + EA +
Sbjct: 153 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTQNEVFGMLAPLIAPKAEAGAKGSGS 212
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P V F VGE V V+DGPF + + ++ E ++ V V IFGR TPVEL+++QV K
Sbjct: 213 APAIEVDFTVGESVTVTDGPFDTLPATISEINAEGQKLKVLVSIFGRETPVELSFSQVAK 272
Query: 176 I 176
I
Sbjct: 273 I 273
>gi|256825902|ref|YP_003149862.1| transcription antitermination protein nusG [Kytococcus sedentarius
DSM 20547]
gi|256689295|gb|ACV07097.1| transcription antitermination protein nusG [Kytococcus sedentarius
DSM 20547]
Length = 296
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 23/193 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E V ++ +K ER PGY
Sbjct: 106 WYVLHTYAGYEKRVKANLEQRAVSMNMEDYIFQAEVPMETVTEIKNNQKKTVERVRMPGY 165
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----NQVEAAV----- 114
L++ +T+ + T+++TP V GF+G +P P++ E+ ++ +Q +AA
Sbjct: 166 CLVRMDLTNASWGTVRNTPGVTGFVGNATDPVPLSLGEVFDMLAPDFESQAQAAAGSQEG 225
Query: 115 -----------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
Q P+ V FEVGE V V +GPF + + ++ E +V V V IFGR
Sbjct: 226 ATTVEPKSGTPQMPL--VDFEVGEAVTVMEGPFETLPATISEINVEARKVQVLVSIFGRE 283
Query: 164 TPVELAYNQVEKI 176
TPVELA+NQV KI
Sbjct: 284 TPVELAFNQVAKI 296
>gi|86606432|ref|YP_475195.1| transcription antitermination protein NusG [Synechococcus sp.
JA-3-3Ab]
gi|86554974|gb|ABC99932.1| transcription termination/antitermination factor NusG
[Synechococcus sp. JA-3-3Ab]
Length = 223
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWY VQV S CE K ++ R + + + E+ IP + R G++ E + FP
Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ + D + +K TP VI F+GT E P P++ SE++ I + VE
Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V+ + G+R+ V GPF F G V +V E+ ++ + IFGR TPVEL +
Sbjct: 160 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217
Query: 172 QVEKIV 177
QV K V
Sbjct: 218 QVRKEV 223
>gi|261338353|ref|ZP_05966237.1| transcription termination/antitermination factor NusG
[Bifidobacterium gallicum DSM 20093]
gi|270277028|gb|EFA22882.1| transcription termination/antitermination factor NusG
[Bifidobacterium gallicum DSM 20093]
Length = 290
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 108/187 (57%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ GL+ ++ ++ +P E V KG+KV + R P
Sbjct: 105 KWYVLHTYSGYEKRVKSNIESRVASFGLEDVIFQVEVPMEEVEKHTEKGKKVVTRVR-VP 163
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G P+P++ E+ ++ ++ A +
Sbjct: 164 GYVLIRMYPDENARRIVRETEGVTGFVGPTREPAPLSRQEVVSMLAPMIASQALKDAGDK 223
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V F G++V V+DGPFA+ + +V +V+ +++V V IFGR TPVEL +
Sbjct: 224 PAAAKKRTIEVSFAPGDQVTVTDGPFATMSAVVSDVEPTTQKLNVLVSIFGRDTPVELGF 283
Query: 171 NQVEKIV 177
+QVEK+V
Sbjct: 284 DQVEKLV 290
>gi|284047641|ref|YP_003397980.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731]
gi|283951862|gb|ADB46665.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731]
Length = 191
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ ++ G++ + ++ +P + V + ++ R+ FPGY
Sbjct: 7 WYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVFPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------NQVEA---AV 114
VLI+ ++ D+ ++ +++TP V GF+GTG P P++D E+E I+ ++ EA AV
Sbjct: 67 VLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSDREVERILGAQPKEGDKAEAAGKAV 126
Query: 115 QRPVSSVFFEVG--ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ PV + VG + V + F G V +++E+ ++ V V +FGR TP+E+ + Q
Sbjct: 127 EEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEVKFTQ 186
Query: 173 VEKI 176
VE I
Sbjct: 187 VEAI 190
>gi|113474161|ref|YP_720222.1| transcription antitermination protein NusG [Trichodesmium
erythraeum IMS101]
gi|110165209|gb|ABG49749.1| transcription antitermination protein nusG [Trichodesmium
erythraeum IMS101]
Length = 224
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP + +RK G + +SE + FP
Sbjct: 30 RWYAVQVASGCEKRVKTNLSQRIQTLDITDKIFKVEIPHIAAIKLRKDGSRQHSEEKVFP 89
Query: 63 GYVLIKAVMT-----------DKVYHTIKDTPKVIGFLGTGEN-----------PSPVTD 100
GYVL++ + D+ + +K TP VI F+G + P P++
Sbjct: 90 GYVLVQMKLNWHEEQKEWRIDDEAWQIVKSTPNVINFVGAEQKRRYGRGRGHVKPLPLSS 149
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
SE+E I + A Q P V G+ + V GPF F G V V E++++ + IF
Sbjct: 150 SEVERIFRR--AQEQEPYLKVTVAEGDHITVLSGPFKDFEGDVIEVSPERNKLKALLSIF 207
Query: 161 GRVTPVELAYNQVEK 175
GR TPVEL +NQVEK
Sbjct: 208 GRDTPVELEFNQVEK 222
>gi|22297838|ref|NP_681085.1| transcription antitermination protein NusG [Thermosynechococcus
elongatus BP-1]
gi|22294015|dbj|BAC07847.1| transcription antitermination protein [Thermosynechococcus
elongatus BP-1]
Length = 227
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY VQV S CEKK +I RL + + I IP V+ ++K G + E + FPG
Sbjct: 34 WYAVQVASGCEKKVKSTIEQRLHTLDVADRIFRIEIPQTPVIKIKKDGSRQTIEEKVFPG 93
Query: 64 YVLIKA-----------VMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDS 101
YVL++ + D+ + IK+TP VI F+G + P P++ +
Sbjct: 94 YVLVQVRAQQSPETGEWQIDDEAWQVIKNTPNVINFVGAEQRRSTGRGRGHVKPMPLSPA 153
Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
E+E I + A Q PV + G+++ V +GPF F G V V E+S++ + IFG
Sbjct: 154 EVERIFRK--AQEQEPVHRIDLNSGDKIKVLNGPFKDFEGEVIEVSAERSKLKALLSIFG 211
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL QVEK+
Sbjct: 212 RETPVELEVTQVEKV 226
>gi|291457099|ref|ZP_06596489.1| transcription termination/antitermination factor NusG
[Bifidobacterium breve DSM 20213]
gi|291380934|gb|EFE88452.1| transcription termination/antitermination factor NusG
[Bifidobacterium breve DSM 20213]
Length = 275
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 90 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVR-VP 148
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA +
Sbjct: 149 GYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDK 208
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 209 PAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 268
Query: 171 NQVEKI 176
+QV+K+
Sbjct: 269 HQVQKL 274
>gi|300857721|ref|YP_003782704.1| transcription antitermination protein [Corynebacterium
pseudotuberculosis FRC41]
gi|300685175|gb|ADK28097.1| transcription antitermination protein [Corynebacterium
pseudotuberculosis FRC41]
gi|302205463|gb|ADL09805.1| Transcription anti-termination protein NusG [Corynebacterium
pseudotuberculosis C231]
Length = 276
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + ++ +P E+ V +R G++ +R+ PGY
Sbjct: 81 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
VL++ + D+ + ++DTP V F+G N +PV ++ + N V
Sbjct: 141 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 200
Query: 112 A----------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
A A +P V F+VGE V + G AS + + +D E +++ V IFG
Sbjct: 201 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 260
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL ++QVEK+
Sbjct: 261 RETPVELNFDQVEKV 275
>gi|182436668|ref|YP_001824387.1| putative transcription antitermination factor NusG [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326777290|ref|ZP_08236555.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1]
gi|548396|sp|P36260|NUSG_STRGR RecName: Full=Transcription antitermination protein nusG
gi|603589|emb|CAA51296.1| NusG [Streptomyces griseus]
gi|178465184|dbj|BAG19704.1| putative transcription antitermination factor NusG [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326657623|gb|EGE42469.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1]
Length = 294
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|306823644|ref|ZP_07457019.1| transcription termination/antitermination factor NusG
[Bifidobacterium dentium ATCC 27679]
gi|304553351|gb|EFM41263.1| transcription termination/antitermination factor NusG
[Bifidobacterium dentium ATCC 27679]
Length = 270
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ GL+ + +I +P E V KG+K+ + R P
Sbjct: 85 KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVR-VP 143
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + + +++T V GF+G + P+P++ E+ +M +
Sbjct: 144 GYVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDK 203
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +
Sbjct: 204 PAAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 263
Query: 171 NQVEKIV 177
NQVEK+
Sbjct: 264 NQVEKLA 270
>gi|328884386|emb|CCA57625.1| Transcription antitermination protein NusG [Streptomyces venezuelae
ATCC 10712]
Length = 299
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N ++ PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKGGERKNVKQNKLPGY 171
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 232 KPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 292 SFDQIQK 298
>gi|302330016|gb|ADL20210.1| Transcription anti-termination protein NusG [Corynebacterium
pseudotuberculosis 1002]
gi|308275699|gb|ADO25598.1| Transcription anti-termination protein NusG [Corynebacterium
pseudotuberculosis I19]
Length = 295
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + ++ +P E+ V +R G++ +R+ PGY
Sbjct: 100 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
VL++ + D+ + ++DTP V F+G N +PV ++ + N V
Sbjct: 160 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 219
Query: 112 A----------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
A A +P V F+VGE V + G AS + + +D E +++ V IFG
Sbjct: 220 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 279
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL ++QVEK+
Sbjct: 280 RETPVELNFDQVEKV 294
>gi|212716698|ref|ZP_03324826.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM
16992]
gi|212660402|gb|EEB20977.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM
16992]
Length = 269
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ G++ + +I +P E V KG+KV + R P
Sbjct: 84 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVR-VP 142
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 143 GYVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDK 202
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +
Sbjct: 203 PAANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 262
Query: 171 NQVEKIV 177
NQVEK+
Sbjct: 263 NQVEKLA 269
>gi|300812659|ref|ZP_07093071.1| transcription termination/antitermination factor NusG
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496389|gb|EFK31499.1| transcription termination/antitermination factor NusG
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 194
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 4/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E + +G+K + FPG
Sbjct: 18 QWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ E V
Sbjct: 78 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVDY 137
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V ++ G F G + + ++K ++ + + +FG T EL ++QV+K+
Sbjct: 138 D-YEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHATTAELGFDQVKKM 192
>gi|291541516|emb|CBL14626.1| transcription antitermination protein nusG [Ruminococcus bromii
L2-63]
Length = 175
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K + L ++ ++ +P E V + E + FPG
Sbjct: 7 RWYVVHTYSGYENKVATDLMTTAENRNLQDMIIDVKVPVEIVTETVGDKTKEVENKLFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K V TD+ ++ +++ GF+G G P P+TD+E+ + V+ + +
Sbjct: 67 YVFVKMVYTDETWYVVRNIRGCTGFVGPGSKPVPLTDAEVYRM------GVETRSVKLNY 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + DGP F G+V+ +D +K V V V +FGR TPVEL Q E I
Sbjct: 121 SVGDSVRIIDGPLEDFVGVVEEIDADKDYVRVVVSMFGRETPVELELAQAEPI 173
>gi|171741354|ref|ZP_02917161.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC
27678]
gi|283455289|ref|YP_003359853.1| putative transcription antitermination protein nusG
[Bifidobacterium dentium Bd1]
gi|171276968|gb|EDT44629.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC
27678]
gi|283101923|gb|ADB09029.1| putative transcription antitermination protein nusG
[Bifidobacterium dentium Bd1]
Length = 270
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ GL+ + +I +P E V KG+K+ + R P
Sbjct: 85 KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVR-VP 143
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + + +++T V GF+G + P+P++ E+ +M +
Sbjct: 144 GYVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDK 203
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +
Sbjct: 204 PAAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 263
Query: 171 NQVEKIV 177
NQVEK+
Sbjct: 264 NQVEKLA 270
>gi|744230|prf||2014256A nusG gene
Length = 294
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|256763353|ref|ZP_05503933.1| transcription antitermination protein NusG [Enterococcus faecalis
T3]
gi|256684604|gb|EEU24299.1| transcription antitermination protein NusG [Enterococcus faecalis
T3]
Length = 180
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ + S E K +I R G+ + + +P E V+ G++ + FPGY
Sbjct: 8 WYVLHL-SGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ S +
Sbjct: 67 VLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ--SDL 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 125 EVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 179
>gi|225850723|ref|YP_002730957.1| transcription termination/antitermination factor NusG
[Persephonella marina EX-H1]
gi|225646577|gb|ACO04763.1| transcription termination/antitermination factor NusG
[Persephonella marina EX-H1]
Length = 264
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
E + FPGY+LIKA + D + IK TP +IGF+ G P P+ D +IE +++Q++ +
Sbjct: 146 ENKVFPGYLLIKAELNDDLIDLIKKTPFIIGFVSAGGMPVPLKDEDIEKVLSQIQKGAPK 205
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + F+ G++V + +GPF +F G+V+ V EK ++ V + IFGR TPVEL ++QVEKI
Sbjct: 206 -VKKLLFQRGDQVRIIEGPFMNFTGVVEEVIPEKEKLVVAISIFGRSTPVELEFSQVEKI 264
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
WY + SN E +A E++ L + + HLV E+ +P+E V ++
Sbjct: 27 WYALYTQSNLEIRAKENLIKMLEMNNMKHLVDEVLVPAEEKVVIK 71
>gi|239943560|ref|ZP_04695497.1| putative transcription antitermination factor NusG [Streptomyces
roseosporus NRRL 15998]
gi|239990013|ref|ZP_04710677.1| putative transcription antitermination factor NusG [Streptomyces
roseosporus NRRL 11379]
Length = 299
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PG
Sbjct: 111 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 170
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 171 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAE 230
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 231 GKPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVE 290
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 291 LSFDQIQK 298
>gi|325662632|ref|ZP_08151232.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 4_1_37FAA]
gi|331086382|ref|ZP_08335462.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 9_1_43BFAA]
gi|325471129|gb|EGC74355.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 4_1_37FAA]
gi|330406148|gb|EGG85671.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 9_1_43BFAA]
Length = 171
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + V+ ++ G + +++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVIELKNGAEKAVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+I +M D ++ +++T V GF+G G P P+T+ E+ + Q E+ V V F
Sbjct: 65 YVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMLPLGIQSESIV------VDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ + V G + G V+ V+ K + + V +FGR TPVEL++ +V+K+
Sbjct: 119 EEGDTITVVAGAWEGTVGAVQTVNPAKQSLTINVELFGRETPVELSFTEVKKM 171
>gi|291447027|ref|ZP_06586417.1| transcription antitermination protein nusG [Streptomyces
roseosporus NRRL 15998]
gi|291349974|gb|EFE76878.1| transcription antitermination protein nusG [Streptomyces
roseosporus NRRL 15998]
Length = 294
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PG
Sbjct: 106 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 165
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 166 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAE 225
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 226 GKPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVE 285
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 286 LSFDQIQK 293
>gi|282860792|ref|ZP_06269858.1| NusG antitermination factor [Streptomyces sp. ACTE]
gi|282564528|gb|EFB70064.1| NusG antitermination factor [Streptomyces sp. ACTE]
Length = 297
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 110 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 169
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 229
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 230 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 290 SFDQIQK 296
>gi|224533792|ref|ZP_03674380.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi CA-11.2a]
gi|224513085|gb|EEF83448.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi CA-11.2a]
Length = 186
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 10/184 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHI-MNQVEA 112
+PGY+LI+ + D + + IK VI F+G G+ P P+ D E++ + M E
Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIK-VQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEI 119
Query: 113 AVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + ++ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 120 KANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQ 179
Query: 172 QVEK 175
+E+
Sbjct: 180 HIER 183
>gi|325126276|gb|ADY85606.1| Transcriptional antiterminator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 184
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 4/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E + +G++ + FPG
Sbjct: 8 QWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKREEVNEKVFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ E V
Sbjct: 68 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKV-D 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V +++G F G + + ++K ++ + + +FG T EL ++QV+K+
Sbjct: 127 YDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182
>gi|297192720|ref|ZP_06910118.1| transcription antitermination protein nusG [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721624|gb|EDY65532.1| transcription antitermination protein nusG [Streptomyces
pristinaespiralis ATCC 25486]
Length = 298
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 170
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 231 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 290
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 291 SFDQIQK 297
>gi|254391410|ref|ZP_05006613.1| transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
gi|197705100|gb|EDY50912.1| transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
Length = 299
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PG
Sbjct: 111 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 170
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------- 112
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 171 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAK 230
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 231 GEPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVE 290
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 291 LSFDQIQK 298
>gi|326773946|ref|ZP_08233228.1| transcription termination/antitermination factor NusG [Actinomyces
viscosus C505]
gi|326636085|gb|EGE36989.1| transcription termination/antitermination factor NusG [Actinomyces
viscosus C505]
Length = 300
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 33/204 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF-FP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G K R P
Sbjct: 99 QWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 158
Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------- 107
GYV ++ + +DKV+ TIKDTP V GF+G NP P+T E +
Sbjct: 159 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTPEEIAAK 218
Query: 108 ---------------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
Q+ A Q V V FEVGE V V+DGPF S + + E +
Sbjct: 219 EAAAAEVTAPESGSGTQIAAGGQ--VFEVAFEVGESVIVTDGPFESLPATIAEILPETQK 276
Query: 153 VHVEVVIFGRVTPVELAYNQVEKI 176
+ V + +FGR TP EL++NQV KI
Sbjct: 277 LQVLISLFGRDTPAELSFNQVAKI 300
>gi|315651271|ref|ZP_07904300.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Eubacterium saburreum DSM 3986]
gi|315486475|gb|EFU76828.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Eubacterium saburreum DSM 3986]
Length = 177
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W++ YS E K I + GL + E+T+P E ++ V+ G + +S+++ FPG
Sbjct: 5 QWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI M D+ ++ +++T V GF+G G P P+T+ E+ + A V
Sbjct: 65 YVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTEDELVALGYSGNATKPEARLEVDL 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V G + G++ V+E++ V + V +FGR T VEL + +V K+
Sbjct: 125 KVGDMVSVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVRKV 177
>gi|320009119|gb|ADW03969.1| NusG antitermination factor [Streptomyces flavogriseus ATCC 33331]
Length = 288
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 160
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 220
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 221 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 281 SFDQIQK 287
>gi|294814454|ref|ZP_06773097.1| Transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
gi|326442843|ref|ZP_08217577.1| transcription antitermination protein [Streptomyces clavuligerus
ATCC 27064]
gi|109942286|emb|CAJ84542.1| NusG protein [Streptomyces clavuligerus ATCC 27064]
gi|294327053|gb|EFG08696.1| Transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
Length = 304
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PG
Sbjct: 116 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 175
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------- 112
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 176 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAK 235
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 236 GEPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVE 295
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 296 LSFDQIQK 303
>gi|189440484|ref|YP_001955565.1| transcription antiterminator [Bifidobacterium longum DJO10A]
gi|227547016|ref|ZP_03977065.1| transcription antiterminator [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|312133805|ref|YP_004001144.1| nusg [Bifidobacterium longum subsp. longum BBMN68]
gi|322689997|ref|YP_004209731.1| transcription antiterminator [Bifidobacterium longum subsp.
infantis 157F]
gi|189428919|gb|ACD99067.1| Transcription antiterminator [Bifidobacterium longum DJO10A]
gi|227212548|gb|EEI80437.1| transcription antiterminator [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|311773091|gb|ADQ02579.1| NusG [Bifidobacterium longum subsp. longum BBMN68]
gi|320461333|dbj|BAJ71953.1| putative transcription antiterminator [Bifidobacterium longum
subsp. infantis 157F]
Length = 297
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVR-VP 170
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA +
Sbjct: 171 GYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDK 230
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 231 PAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 290
Query: 171 NQVEKI 176
+QV+K+
Sbjct: 291 HQVQKL 296
>gi|296454931|ref|YP_003662075.1| NusG antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
gi|296184363|gb|ADH01245.1| NusG antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
Length = 297
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVR-VP 170
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA +
Sbjct: 171 GYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDK 230
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 231 PAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 290
Query: 171 NQVEKI 176
+QV+K+
Sbjct: 291 HQVQKL 296
>gi|213693145|ref|YP_002323731.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|213524606|gb|ACJ53353.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320459325|dbj|BAJ69946.1| putative transcription antiterminator [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 297
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVR-VP 170
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA +
Sbjct: 171 GYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDK 230
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 231 PAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 290
Query: 171 NQVEKI 176
+QV+K+
Sbjct: 291 HQVQKL 296
>gi|23465850|ref|NP_696453.1| transcription antitermination protein [Bifidobacterium longum
NCC2705]
gi|317482952|ref|ZP_07941956.1| transcription termination/antitermination factor NusG
[Bifidobacterium sp. 12_1_47BFAA]
gi|322691931|ref|YP_004221501.1| transcription antiterminator [Bifidobacterium longum subsp. longum
JCM 1217]
gi|23326549|gb|AAN25089.1| probable transcription antitermination protein [Bifidobacterium
longum NCC2705]
gi|291516534|emb|CBK70150.1| transcription termination/antitermination factor NusG
[Bifidobacterium longum subsp. longum F8]
gi|316915559|gb|EFV36977.1| transcription termination/antitermination factor NusG
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456787|dbj|BAJ67409.1| putative transcription antiterminator [Bifidobacterium longum
subsp. longum JCM 1217]
Length = 297
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVR-VP 170
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA +
Sbjct: 171 GYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDK 230
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 231 PAAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 290
Query: 171 NQVEKI 176
+QV+K+
Sbjct: 291 HQVQKL 296
>gi|189184706|ref|YP_001938491.1| transcription antitermination protein NusG [Orientia tsutsugamushi
str. Ikeda]
gi|189181477|dbj|BAG41257.1| transcription antitermination protein NusG [Orientia tsutsugamushi
str. Ikeda]
Length = 178
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYI++ S E ++I + ++ G+ H EI IP +VV +++G+ +N ++
Sbjct: 1 MAYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKT 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY+LIK M D+V ++ K+ F G+ VT+ E++ +M Q+E Q P
Sbjct: 60 MPGYILIKMDMIDQVKDFMQKVVKLNRFPGSESKIVQVTEKEVQEMMVQLENKAQDPSFL 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+++GE V V+DGPF +F G ++ VD K + + + IF R T + + ++QVEK+
Sbjct: 120 EKYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 175
>gi|313679512|ref|YP_004057251.1| transcription antitermination protein nusg [Oceanithermus profundus
DSM 14977]
gi|313152227|gb|ADR36078.1| transcription antitermination protein nusG [Oceanithermus profundus
DSM 14977]
Length = 189
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 13/186 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E K E++ R G+ + ++ IP+E +V R+G +K R+
Sbjct: 1 MSIEWYAVHTYVGYEDKVKENLEKRARALGMQDKIFQVLIPTEEIVEHREGGKKETVYRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIM-- 107
FPGYV ++ + D + + +++TP V G +GT E P P+T E++ I+
Sbjct: 61 LFPGYVFVQMDLGDNPEDPNEAWEVVRNTPGVTGVVGTSEGGKYRPVPLTPDEVQRILEV 120
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ + + P V F+ G+ V V GPFA F G+V ++ E+++V V V IFGR TPVE
Sbjct: 121 SGLAGRKESPKPQVTFKEGDVVRVVSGPFADFTGVVSEINPERNKVKVLVSIFGRETPVE 180
Query: 168 LAYNQV 173
L ++QV
Sbjct: 181 LDFSQV 186
>gi|239620885|ref|ZP_04663916.1| transcription antitermination protein nusG [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239516146|gb|EEQ56013.1| transcription antitermination protein nusG [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 293
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R++ G++ + ++ +P E V KG+KV + R P
Sbjct: 108 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVR-VP 166
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA +
Sbjct: 167 GYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDK 226
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 227 PAAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 286
Query: 171 NQVEKI 176
+QV+K+
Sbjct: 287 HQVQKL 292
>gi|225351134|ref|ZP_03742157.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158590|gb|EEG71832.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 265
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 105/186 (56%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ G++ + +I +P E V KG+KV + R P
Sbjct: 80 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVR-VP 138
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + + +++T V GF+G + P+P++ E+ +M +
Sbjct: 139 GYVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDK 198
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +
Sbjct: 199 PAANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 258
Query: 171 NQVEKI 176
NQVEK+
Sbjct: 259 NQVEKL 264
>gi|160941939|ref|ZP_02089264.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC
BAA-613]
gi|158435146|gb|EDP12913.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC
BAA-613]
Length = 172
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 5/173 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K I + L + E+++P VV ++ G + ++++ FPG
Sbjct: 5 HWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+T+ E+ + E V V F
Sbjct: 65 YVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASLGFHREEDVL-----VDF 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V G + G +K +++ K + + V +FGR TPVEL + +V+K+
Sbjct: 120 EVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKKM 172
>gi|307328012|ref|ZP_07607193.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113]
gi|306886317|gb|EFN17322.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113]
Length = 304
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
VL++ +T++ + +++TP V GF+G +P P+T EI ++ E+
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEESG 236
Query: 114 VQRP-----VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ P V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 237 MPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 297 SFDQIQK 303
>gi|291303407|ref|YP_003514685.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728]
gi|290572627|gb|ADD45592.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728]
Length = 269
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 26/195 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + ++ GR++ ++ + +I +P++ V V+ G++ + + FP Y
Sbjct: 78 WYVVHSYAGFENRVKSNLEGRIASFDMEDYIYQIEVPTQMQVEVKNGKRSRVQAKVFPSY 137
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV------- 114
VL++ +T + Y +++TP V GF+G + PSP+T +E ++ + AV
Sbjct: 138 VLVRMELTPESYSVVRNTPGVTGFVGATNQTDRPSPLT---LEDVLKWLAPAVAPEEPAA 194
Query: 115 -------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+P + F VG+ V V+DG FAS + ++ ++ ++ V V IFG
Sbjct: 195 TGSGESSGEGGATAKPEIKLDFAVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFG 254
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL +NQV I
Sbjct: 255 RETPVELNFNQVSTI 269
>gi|317057218|ref|YP_004105685.1| NusG antitermination factor [Ruminococcus albus 7]
gi|315449487|gb|ADU23051.1| NusG antitermination factor [Ruminococcus albus 7]
Length = 175
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++I + L L+ E+ IP E V ++ + V +E++ FP
Sbjct: 6 KWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVRIPMETVTEIKGEKTVEAEKKLFPS 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K V+TD ++ +++T V GF+G G P P++D E+E + V+ Q + +
Sbjct: 66 YVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDREVEAL--GVDVGTQTVRTDI-- 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ V + G F +G V ++D E + V V +FGR T V L Q+ K
Sbjct: 122 AVGDDVIMVGGSFDGMSGTVSSLDLENAAADVTVSMFGRETTVTLPLTQLRK 173
>gi|313888133|ref|ZP_07821807.1| transcription termination/antitermination factor NusG
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845823|gb|EFR33210.1| transcription termination/antitermination factor NusG
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 180
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EKK ++ + G++ ++ +I IP E V + G ER+ FP
Sbjct: 13 KWYVIHTYSGYEKKVKANMEAMVHNRGMEDVIFDIRIPMEDYVETKDGVSKAKERKMFPS 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ +M D+ ++ +++T V GF+G P P+TD E+ + +
Sbjct: 73 YVLVNMIMNDETWYLVRNTRGVTGFVGPASKPVPLTDEEVLLL-----GVTDNKELFDNY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E+GE V V +GPF G + + + +K +V V + +FGR T VEL +NQ+ K
Sbjct: 128 EIGELVKVINGPFKDLVGKIDDFNYDKGKVKVCISMFGRDTIVELDFNQIIK 179
>gi|160892863|ref|ZP_02073652.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50]
gi|156865422|gb|EDO58853.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50]
Length = 174
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E K I + L + E+++P E + V+ G + R+ F
Sbjct: 6 SAKWYVVHTYSGYENKVKADIEKTIENRKLQDQILEVSVPVEESIEVKNGVQKAVTRKLF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ +M D ++ +++T V GF+G G P P++D E++++ + + +
Sbjct: 66 PGYVLLNMIMNDATWYVVRNTRGVTGFVGPGSKPVPLSDDEMKYL------GINKETIVI 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V+ G + G +K ++ K + ++V IFGR T VE+A+ ++K+
Sbjct: 120 DAEVGDMVEVTAGAWEGTVGSIKAINPSKQTITIDVEIFGRATSVEIAFADIKKL 174
>gi|284050920|ref|ZP_06381130.1| transcription antitermination protein NusG [Arthrospira platensis
str. Paraca]
gi|291565933|dbj|BAI88205.1| transcription antitermination protein NusG [Arthrospira platensis
NIES-39]
Length = 223
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP + + +RK G + + + + FP
Sbjct: 29 RWYAVQVASGCEKRVKLNLDQRVQTLDVADRILKVEIPQTQAIKLRKDGSRQHGQEKVFP 88
Query: 63 GYVLIKAVMT-----------DKVYHTIKDTPKVIGFLGTGEN-----------PSPVTD 100
GYVLI+ + D+ + +K+TP VI F+G + P P++
Sbjct: 89 GYVLIQMKLNWNNELNQWDVDDEAWQVVKNTPHVINFVGAEQKRHSGRGRGHVKPLPLSP 148
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
SE++ I Q + Q V V G+ + V GPF F G V V E++++ + IF
Sbjct: 149 SEVDRIFRQTQQ--QETVVKVEMASGDHILVLSGPFKDFEGDVIEVSPERNKLKALLSIF 206
Query: 161 GRVTPVELAYNQVEK 175
GR TPVEL +NQVEK
Sbjct: 207 GRDTPVELEFNQVEK 221
>gi|289433600|ref|YP_003463472.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289169844|emb|CBH26382.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 149
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
G+ + + +P E ++ G+ +R+ FPGYVL++ VMTD ++ +++TP V GF+
Sbjct: 2 GMSDKIFRVIVPEEEETEIKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFV 61
Query: 90 GTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
G+ P+P+ E + I+ + +R + FE+GE V V +GPFA F+G V +
Sbjct: 62 GSSGSGSKPTPLLPEEADRILKSMGMVEKR--AEADFEIGETVMVKEGPFADFSGKVDEM 119
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 120 DNDKGKAKVMVNMFGRETPVEVDFNQIEKI 149
>gi|331701823|ref|YP_004398782.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929]
gi|329129166|gb|AEB73719.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929]
Length = 182
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ R G+ + +P + V+ G+ + FPG
Sbjct: 8 QWYVLHTYSGYENKVKMNLDSRKESMGMQDYIFRTVVPEQEEHEVKNGKDKVKMDKTFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + +
Sbjct: 68 YVLVEMIMTDQAWYIVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHEDLD 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V +G+ V + DG F +G V VD EK R+ V + +FGR T +L +NQ++
Sbjct: 128 V--NIGDTVKIVDGAFTGLDGKVTEVDNEKQRLKVNIEMFGRETSTDLDFNQID 179
>gi|302543380|ref|ZP_07295722.1| transcription antitermination protein NusG [Streptomyces
hygroscopicus ATCC 53653]
gi|302460998|gb|EFL24091.1| transcription antitermination protein NusG [Streptomyces
himastatinicus ATCC 53653]
Length = 276
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 89 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 148
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
VL++ +T++ + +++TP V GF+G +P P+T EI ++ E
Sbjct: 149 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKATAEEGG 208
Query: 114 VQRP-----VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
P V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 209 APAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 268
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 269 SFDQIQK 275
>gi|253581636|ref|ZP_04858860.1| transcription antitermination protein nusG [Fusobacterium varium
ATCC 27725]
gi|251835985|gb|EES64522.1| transcription antitermination protein nusG [Fusobacterium varium
ATCC 27725]
Length = 199
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 19/194 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +W+++ YS EKK + ++ G+ +VT++ +P E + +G+K R+
Sbjct: 5 LVKKWFMIHTYSGYEKKVKTDLEQKIETLGIGEIVTKVLVPEEETIEEVRGKKKTVARKI 64
Query: 61 FPGYVLIKAVMT-------------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
FPGYV+++ V T ++ +++T V GF+G G +P P+ D E+ +I
Sbjct: 65 FPGYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVANIF 124
Query: 108 NQV------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ E + V + F +G+ V + G FA G V +D E+ +V V + +FG
Sbjct: 125 RVIGYDIPEEEKENKEVLKINFGLGDFVKILGGGFAGHEGKVAEIDMEQRKVKVMIEMFG 184
Query: 162 RVTPVELAYNQVEK 175
R+TPVE+ +N VEK
Sbjct: 185 RMTPVEVDFNSVEK 198
>gi|15807041|ref|NP_295770.1| transcription antitermination protein NusG [Deinococcus radiodurans
R1]
gi|18203424|sp|Q9RSS6|NUSG_DEIRA RecName: Full=Transcription antitermination protein nusG
gi|6459839|gb|AAF11597.1|AE002041_1 transcription antitermination protein NusG [Deinococcus radiodurans
R1]
Length = 190
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R R G+ + ++ P E V +++G +KVN +R
Sbjct: 1 MSIEWYAVHTYVGQEDRVQDQLMDRARRLGMYRTKIFQVLQPEEEAVEIQEGGKKVNVKR 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + ++ T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLTSV 120
Query: 111 EAAVQ-----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A Q P V + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP
Sbjct: 121 GVAAQPVVEEAPRIKVDLKAGDMVRVTSGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180
Query: 166 VELAYNQVEK 175
VEL ++QV K
Sbjct: 181 VELDFSQVAK 190
>gi|222446920|pdb|2K06|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
Nusg
Length = 123
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
YVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122
>gi|309812402|ref|ZP_07706157.1| transcription termination/antitermination factor NusG [Dermacoccus
sp. Ellin185]
gi|308433707|gb|EFP57584.1| transcription termination/antitermination factor NusG [Dermacoccus
sp. Ellin185]
Length = 277
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R++ ++ + +I +P E ++ G+K + R PGY
Sbjct: 92 WYVIHSYAGYEKRVKTNLEQRITSLNMEDYIFQIEVPMEDYTEIKNGQKKSGTRVRIPGY 151
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G P P++ E+ ++N
Sbjct: 152 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPYPLSIDEVVTMLNPTFEEPEASAEGAAAS 211
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + V F VGE V V +GPF + + ++ + ++ V V IFGR TPVEL +
Sbjct: 212 SGSASSASADVDFTVGESVTVMEGPFETLPATISEINADTQKIKVLVSIFGRETPVELGF 271
Query: 171 NQVEKI 176
NQV KI
Sbjct: 272 NQVAKI 277
>gi|258646899|ref|ZP_05734368.1| transcription termination/antitermination factor NusG [Dialister
invisus DSM 15470]
gi|260404338|gb|EEW97885.1| transcription termination/antitermination factor NusG [Dialister
invisus DSM 15470]
Length = 206
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +++ ++ G+D + +I +P V+ G K R+ FPG
Sbjct: 35 RWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPG 94
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LI+ + D+ ++ +++TP V GF+GT P P++D E + I +E ++ +
Sbjct: 95 YLLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRI---IEGKDKKQTAKTDA 151
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+VG+ + ++ GPFA + +V +V +++S++ ++ FG T +EL
Sbjct: 152 KVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIEL 196
>gi|283783657|ref|YP_003374411.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis 409-05]
gi|298252884|ref|ZP_06976678.1| transcription antitermination protein [Gardnerella vaginalis 5-1]
gi|283441617|gb|ADB14083.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis 409-05]
gi|297533248|gb|EFH72132.1| transcription antitermination protein [Gardnerella vaginalis 5-1]
Length = 298
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R+ GL+ + +I +P E V KG+KV + R P
Sbjct: 113 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVR-VP 171
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G P+P++ E+ +M ++ A +
Sbjct: 172 GYVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDK 231
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V ++VG++V V+DGPF++ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 232 PAAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGF 291
Query: 171 NQVEKIV 177
NQVE IV
Sbjct: 292 NQVEPIV 298
>gi|283769310|ref|ZP_06342210.1| transcription termination/antitermination factor NusG [Bulleidia
extructa W1219]
gi|283104086|gb|EFC05469.1| transcription termination/antitermination factor NusG [Bulleidia
extructa W1219]
Length = 196
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 102/177 (57%), Gaps = 6/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-RFFP 62
RWY+V Y+ E + +++ RL G+ + I + E + ++K K ++ FP
Sbjct: 19 RWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVKKVNMFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ MTD+ ++ +++TP V GF+G+ G P PV++ E+E I+ ++ Q+ V
Sbjct: 79 GYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHGDQKVV- 137
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VG+ V + GPFA+ G + ++++ V ++FGR TP E++Y ++K+
Sbjct: 138 -VDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQKL 193
>gi|3810894|dbj|BAA34066.1| transcription antitermination protein [Vibrio alginolyticus]
Length = 113
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMN 108
YVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N
Sbjct: 68 YVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILN 113
>gi|229817144|ref|ZP_04447426.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM
20098]
gi|229784933|gb|EEP21047.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM
20098]
Length = 281
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R+ GL+ + +I +P E V KG+KV + R P
Sbjct: 96 KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTEKGKKVLTRVR-VP 154
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ ++ +++T V GF+G ++P+P++ E+ +M ++ A +
Sbjct: 155 GYVLIRMWPDEEARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDK 214
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +
Sbjct: 215 PAAAKKRKLEVSYAVGDQVTVTDGPFTTMPAVVSDVEPTTQKLTVLVSIFGRDTPVELDF 274
Query: 171 NQVEKIV 177
NQVEK+
Sbjct: 275 NQVEKLA 281
>gi|291518242|emb|CBK73463.1| transcription antitermination protein nusG [Butyrivibrio
fibrisolvens 16/4]
Length = 176
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + ++ +P V + G K ++ +PG
Sbjct: 5 KWYVVHTYSGYENKVKTNIEKAIETQKLEEQILDVRVPMVEVTETKDGVKKQVSKKMYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI+ +M D+ ++ +++T V GF+G G P P++++E++ + + ++ V F
Sbjct: 65 YVLIEMIMNDETWYVVRNTRGVTGFVGPGSKPVPLSEAEVKAYL--LGDNTEKVNVEVDF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ + V DG + G+VK+++ +K V + V +FGR TPVE+ + V K+
Sbjct: 123 EVGDTLSVIDGTWKDTVGVVKSINAKKQTVTISVEMFGRETPVEIDFTDVRKM 175
>gi|311896608|dbj|BAJ29016.1| putative transcription antitermination protein [Kitasatospora setae
KM-6054]
Length = 315
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +++ R ++ + E +P E VV ++ G + + PGY
Sbjct: 132 WYVIHTYAGYENRVKQNLEQRSVSLNVEDYIFESQVPQEEVVQIKNGDRKTIRQNKLPGY 191
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAAVQ-------- 115
VL++ +T + + +++TP V GF+G +P P+T D ++ + VE A
Sbjct: 192 VLVRMDLTPESWGVVRNTPGVTGFVGNAYDPYPLTLDEVVKMLAPDVERAAAKEAGKASP 251
Query: 116 -RP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
RP V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL+++Q
Sbjct: 252 VRPVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQ 311
Query: 173 VEK 175
++K
Sbjct: 312 IQK 314
>gi|269959044|ref|YP_003328833.1| transcription antitermination protein [Anaplasma centrale str.
Israel]
gi|269848875|gb|ACZ49519.1| transcription antitermination protein [Anaplasma centrale str.
Israel]
Length = 186
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQV S E+K + I R + G+ + +E+ IP E V ++ +KV R+ PGY
Sbjct: 10 WYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTRIKYNKKVAMRRKLSPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSS--V 121
V + ++D + ++ PKV FL P + SE+E + + + AV SS
Sbjct: 70 VFLHMKLSDDAINFVRRVPKVSNFLLDDAGVPKVIPSSEMETMRSSMCQAVSSGTSSEVC 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG V+ V+E+K + V+IFGR+T +E + ++K+
Sbjct: 130 SFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGISVMIFGRLTKIEFKLSSIQKV 184
>gi|229542219|ref|ZP_04431279.1| NusG antitermination factor [Bacillus coagulans 36D1]
gi|229326639|gb|EEN92314.1| NusG antitermination factor [Bacillus coagulans 36D1]
Length = 177
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E + V+ +K +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEELEVKNEKKKVVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G G P+P+ EI I+ ++ +R
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGGGSKPTPLLPEEINTILKRMGMEEKR- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V FE+GE V V +GPFA+F G + +D +K R V V +FGR TPVEL + Q++KI
Sbjct: 120 -ADVDFEIGETVTVKEGPFANFAGKIVEMDRDKGRAKVMVNMFGRDTPVELVFEQIDKI 177
>gi|239623239|ref|ZP_04666270.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522205|gb|EEQ62071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 172
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I + L + E+++P VV ++ G + ++++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI VM D ++ +++T V GF+G G P P+T+ E+ + + E V V FE
Sbjct: 66 VLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASLGFRREEDVL-----VDFE 120
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V G + G +K +++ K + + V +FGR TPVEL + +V+++
Sbjct: 121 VGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKRM 172
>gi|58584909|ref|YP_198482.1| transcription antiterminator [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419225|gb|AAW71240.1| Transcription antiterminator [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 278
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SN E+K + + R G++ E+ IP E + V + +K R+ FP
Sbjct: 100 KWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + + + PK V GFL G P ++D EI + N + A +
Sbjct: 160 GYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S +E GE+V ++DG F +F G V +++EK +++EV I G+ T +EL QVEKI
Sbjct: 220 SHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQVEKI 276
>gi|297243309|ref|ZP_06927243.1| transcription antitermination protein [Gardnerella vaginalis AMD]
gi|296888716|gb|EFH27454.1| transcription antitermination protein [Gardnerella vaginalis AMD]
Length = 300
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R+ GL+ + +I +P E V KG+KV + R P
Sbjct: 115 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVR-VP 173
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G P+P++ E+ +M ++ A +
Sbjct: 174 GYVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDK 233
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V ++VG++V V+DGPF++ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 234 PAAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGF 293
Query: 171 NQVEKIV 177
NQVE IV
Sbjct: 294 NQVEPIV 300
>gi|227825215|ref|ZP_03990047.1| NusG antitermination factor [Acidaminococcus sp. D21]
gi|226905714|gb|EEH91632.1| NusG antitermination factor [Acidaminococcus sp. D21]
Length = 185
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ ++ G++ ++ ++ +P + + + ++ R+ FPGY
Sbjct: 7 WYVIHTYSGYENKVKLNLESKVHSLGMEDMIFQVLVPMQDELETKDDQQKVVSRKVFPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-----EAAVQRPVS 119
VLI+ ++ D+ ++ +++TP V GF+GTG P P++ E+ I+ + EA+V+ P+
Sbjct: 67 VLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSPREVARILGKQSTGKKEASVEAPIR 126
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+ + V + F G V + +E+ +V V + +FGRVTPVE+ ++QVE I
Sbjct: 127 MKCPVELDQTVRIKAPGFNDMVGTVAEISDEQQKVKVMIEMFGRVTPVEVNFSQVEAI 184
>gi|220909378|ref|YP_002484689.1| transcription antitermination protein NusG [Cyanothece sp. PCC
7425]
gi|219865989|gb|ACL46328.1| NusG antitermination factor [Cyanothece sp. PCC 7425]
Length = 217
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY VQV S CEKK +++ R + + +I IP + +RK G + SE + FPG
Sbjct: 24 WYAVQVASGCEKKVKQNLEQRRQTLDVADRILQIEIPQTPTIKLRKDGSRQTSEEKVFPG 83
Query: 64 YVLI-----------KAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDS 101
YVL+ K + D+ + I++TP VI F+G + P + S
Sbjct: 84 YVLLLIREAWDDKRGKWRIDDEAWQVIRNTPNVINFVGAEQRKHTGRGRGHVEPVRLHPS 143
Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
E+E I Q + Q PV + G+++ V +GPF F G V V E+S++ + IFG
Sbjct: 144 EVERIFRQTKE--QEPVHKIDLAAGDKIRVLNGPFKDFEGEVIEVSGERSKLKALLSIFG 201
Query: 162 RVTPVELAYNQVEK 175
R TPVEL NQV+K
Sbjct: 202 RETPVELEVNQVQK 215
>gi|255971873|ref|ZP_05422459.1| transcription antitermination protein NusG [Enterococcus faecalis
T1]
gi|255974868|ref|ZP_05425454.1| transcription antitermination protein NusG [Enterococcus faecalis
T2]
gi|256616771|ref|ZP_05473617.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 4200]
gi|256957955|ref|ZP_05562126.1| transcription antitermination protein NusG [Enterococcus faecalis
DS5]
gi|256961025|ref|ZP_05565196.1| transcription antitermination protein NusG [Enterococcus faecalis
Merz96]
gi|256963833|ref|ZP_05568004.1| transcription antitermination protein NusG [Enterococcus faecalis
HIP11704]
gi|257079893|ref|ZP_05574254.1| transcription antitermination protein NusG [Enterococcus faecalis
JH1]
gi|257081708|ref|ZP_05576069.1| transcription antitermination protein NusG [Enterococcus faecalis
E1Sol]
gi|257084305|ref|ZP_05578666.1| transcription antitermination protein NusG [Enterococcus faecalis
Fly1]
gi|257087696|ref|ZP_05582057.1| transcription antitermination protein NusG [Enterococcus faecalis
D6]
gi|257090914|ref|ZP_05585275.1| transcriptional antitermination protein nusG [Enterococcus faecalis
CH188]
gi|257416898|ref|ZP_05593892.1| transcription antitermination protein NusG [Enterococcus faecalis
AR01/DG]
gi|257420120|ref|ZP_05597114.1| transcription antitermination protein nusG [Enterococcus faecalis
T11]
gi|257421659|ref|ZP_05598649.1| transcription antitermination protein nusG [Enterococcus faecalis
X98]
gi|255962891|gb|EET95367.1| transcription antitermination protein NusG [Enterococcus faecalis
T1]
gi|255967740|gb|EET98362.1| transcription antitermination protein NusG [Enterococcus faecalis
T2]
gi|256596298|gb|EEU15474.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 4200]
gi|256948451|gb|EEU65083.1| transcription antitermination protein NusG [Enterococcus faecalis
DS5]
gi|256951521|gb|EEU68153.1| transcription antitermination protein NusG [Enterococcus faecalis
Merz96]
gi|256954329|gb|EEU70961.1| transcription antitermination protein NusG [Enterococcus faecalis
HIP11704]
gi|256987923|gb|EEU75225.1| transcription antitermination protein NusG [Enterococcus faecalis
JH1]
gi|256989738|gb|EEU77040.1| transcription antitermination protein NusG [Enterococcus faecalis
E1Sol]
gi|256992335|gb|EEU79637.1| transcription antitermination protein NusG [Enterococcus faecalis
Fly1]
gi|256995726|gb|EEU83028.1| transcription antitermination protein NusG [Enterococcus faecalis
D6]
gi|256999726|gb|EEU86246.1| transcriptional antitermination protein nusG [Enterococcus faecalis
CH188]
gi|257158726|gb|EEU88686.1| transcription antitermination protein NusG [Enterococcus faecalis
ARO1/DG]
gi|257161948|gb|EEU91908.1| transcription antitermination protein nusG [Enterococcus faecalis
T11]
gi|257163483|gb|EEU93443.1| transcription antitermination protein nusG [Enterococcus faecalis
X98]
Length = 171
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
+ YS E K +I R G+ + + +P E V+ G++ + FPGYVL+
Sbjct: 1 MHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGYVLV 60
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ S +
Sbjct: 61 EMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ--SDLEVA 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 119 LGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 170
>gi|320536852|ref|ZP_08036847.1| transcription termination/antitermination factor NusG [Treponema
phagedenis F0421]
gi|320146311|gb|EFW37932.1| transcription termination/antitermination factor NusG [Treponema
phagedenis F0421]
Length = 185
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 107/186 (57%), Gaps = 11/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ +S E K +I +S + ++ +I IP E + ++ G+K +R+
Sbjct: 1 MAKEWYILHTFSGYENKIERTIRTLISNGEIPQDVIFDIKIPEEVLTEIKDGKKKTVKRK 60
Query: 60 FFPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAA 113
F PGY+L++ + + V ++++ V GFLGTG N P PV+ +E + I+ Q
Sbjct: 61 FLPGYLLVEMDLPEMDWKAVCNSVRRIHGVTGFLGTGGNAKPQPVSAAEAKSIL-QKTGE 119
Query: 114 VQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
++ ++ F F VG++V + DGPFA+F+G V+ V +++++ V V IFGR TPVEL
Sbjct: 120 IKGDKTARFARTFTVGQQVKIIDGPFATFSGEVEEVMADRNKLRVMVTIFGRTTPVELEM 179
Query: 171 NQVEKI 176
QVE I
Sbjct: 180 LQVEAI 185
>gi|328949288|ref|YP_004366625.1| NusG antitermination factor [Treponema succinifaciens DSM 2489]
gi|328449612|gb|AEB15328.1| NusG antitermination factor [Treponema succinifaciens DSM 2489]
Length = 185
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+Q YS E+K ++ L+ LD ++V ++ +P E VV + G+K
Sbjct: 1 MARSWYILQTYSGYEQKIQRTLATMLTEQKLDSNIVFQVKVPMEEVVEISNGKKHVRNNL 60
Query: 60 FFPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQV-EA 112
PGY++I+ + + I+ V GF+G E P P++ E ++I+ E
Sbjct: 61 ILPGYIMIEMDLPQIGWKNTCSLIRRVQGVTGFVGVKPSEKPRPISTDEAKNILQMAGEL 120
Query: 113 AVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
++ V FEVGE V +++GPFA+F+G +++++ EK+++ V V IFGR TPVE+
Sbjct: 121 KGEKQVRIKQNFEVGETVKITEGPFATFSGAIEDINTEKNKLRVNVQIFGRATPVEVDVL 180
Query: 172 QVEKI 176
QVEKI
Sbjct: 181 QVEKI 185
>gi|256390118|ref|YP_003111682.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928]
gi|256356344|gb|ACU69841.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928]
Length = 262
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 104/178 (58%), Gaps = 7/178 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +++ R++ ++ + ++ +P E VV ++ G++ +R FPGY
Sbjct: 83 WYVIHSYAGYENRVKQNLETRMTTLNMEEFIFQVEVPMEEVVEIKGGQRKRVKRNKFPGY 142
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----NQVEAAVQRP-- 117
VL++ +T++ + +++TP V GF+G P P+T E+ I+ +V + P
Sbjct: 143 VLVRMDLTNESWGVVRNTPGVTGFVGNAHEPYPLTLDEVVKILLEEQPEEVSGKQKAPAE 202
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + FEVG+ V V DGPFA+ + ++ + +V V IFGR TPVEL++NQ++K
Sbjct: 203 VKVLDFEVGDSVTVIDGPFATLQATINEINADSQKVKGLVEIFGRETPVELSFNQIQK 260
>gi|313124310|ref|YP_004034569.1| transcription antitermination protein nusg [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312280873|gb|ADQ61592.1| Transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|325685659|gb|EGD27741.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 194
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 4/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P E + +G+K + FPG
Sbjct: 18 QWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ E V
Sbjct: 78 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVDY 137
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V ++ G F G + + ++K ++ + + +FG EL ++QV+K+
Sbjct: 138 D-YEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHAITAELGFDQVKKM 192
>gi|294630860|ref|ZP_06709420.1| transcription antitermination protein NusG [Streptomyces sp. e14]
gi|292834193|gb|EFF92542.1| transcription antitermination protein NusG [Streptomyces sp. e14]
Length = 288
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + + PGY
Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 160
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P++ EI ++
Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 220
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 221 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 281 SFDQIQK 287
>gi|259047919|ref|ZP_05738320.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Granulicatella adiacens ATCC 49175]
gi|259035416|gb|EEW36671.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Granulicatella adiacens ATCC 49175]
Length = 181
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 4/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G++ + + +P E V V+ G+ + +
Sbjct: 1 MEKEWYVLHTYSGYENKVKSNLLSRIQSMGMEENIFRVIVPEEEEVEVKDGKTKTTVEKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VM+D+ ++ +++TP V GF+G+ G PSP+ E+E I+ ++ V P
Sbjct: 61 FPGYVLVEMVMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVEAILGRIGEKVHAP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VG+ V +++G F +G V +D EK ++ V + +FGR T +L ++QV++
Sbjct: 121 V-DLHVSVGDYVIITEGAFNDMSGKVVELDHEKQKIKVAIEMFGRETIADLEFHQVKE 177
>gi|257869763|ref|ZP_05649416.1| transcription antiterminator NusG [Enterococcus gallinarum EG2]
gi|257803927|gb|EEV32749.1| transcription antiterminator NusG [Enterococcus gallinarum EG2]
Length = 180
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ R G+ + + +P E + G+K + FPGY
Sbjct: 8 WYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKKKEIVHKTFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + V
Sbjct: 68 VLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVELEV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI
Sbjct: 128 --EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180
>gi|329121897|ref|ZP_08250511.1| transcription antitermination factor NusG [Dialister micraerophilus
DSM 19965]
gi|327467694|gb|EGF13190.1| transcription antitermination factor NusG [Dialister micraerophilus
DSM 19965]
Length = 207
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 5/166 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K E++ ++ G+D + +I +P V+ G K R+ FPG
Sbjct: 37 RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
Y+LI+ + D ++ +++TP V GF+GT P P++D E E I+ A + VS +
Sbjct: 97 YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERII----AGDNKKVSVTTE 152
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+VG+++ ++ GPFA + +V V ++K V ++ FG T +EL
Sbjct: 153 AKVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIEL 198
>gi|313892111|ref|ZP_07825706.1| transcription termination/antitermination factor NusG [Dialister
microaerophilus UPII 345-E]
gi|313119466|gb|EFR42663.1| transcription termination/antitermination factor NusG [Dialister
microaerophilus UPII 345-E]
Length = 207
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 5/166 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K E++ ++ G+D + +I +P V+ G K R+ FPG
Sbjct: 37 RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVF 122
Y+LI+ + D ++ +++TP V GF+GT P P++D E E I+ A + VS +
Sbjct: 97 YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERII----AGDNKKVSVTTE 152
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+VG+++ ++ GPFA + +V V ++K V ++ FG T +EL
Sbjct: 153 AKVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIEL 198
>gi|84494813|ref|ZP_00993932.1| transcription antitermination protein NusG [Janibacter sp.
HTCC2649]
gi|84384306|gb|EAQ00186.1| transcription antitermination protein NusG [Janibacter sp.
HTCC2649]
Length = 316
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E V ++ G++ R PGY
Sbjct: 128 WYVIHSYAGYENRVKTNLETRIQSLNMEDFIFEIEVPMEEVTEIKGGQRKLVRRVRMPGY 187
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
V+++ +TD+ + ++ TP V GF+G P P++ E+ ++ E +
Sbjct: 188 VIVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSLDEVYTMIKPAELELAAAAAAGGGS 247
Query: 115 ---------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
Q P+ V FEVGE V V DGPF + + ++ E ++ V V IFGR TP
Sbjct: 248 TGSGAGSASQAPL--VEFEVGESVTVMDGPFETLPATISEINAEGQKLKVLVSIFGRETP 305
Query: 166 VELAYNQVEKI 176
VEL+++QV K+
Sbjct: 306 VELSFSQVSKL 316
>gi|329938257|ref|ZP_08287708.1| putative transcription antitermination factor NusG [Streptomyces
griseoaurantiacus M045]
gi|329302746|gb|EGG46636.1| putative transcription antitermination factor NusG [Streptomyces
griseoaurantiacus M045]
Length = 303
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + + PGY
Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 175
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P++ EI ++
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 235
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 296 SFDQIQK 302
>gi|170017874|ref|YP_001728793.1| transcription termination/antitermination factor NusG [Leuconostoc
citreum KM20]
gi|169804731|gb|ACA83349.1| Transcription termination/antitermination factor NusG [Leuconostoc
citreum KM20]
Length = 211
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E K ++ R G+ + I +P + V +++ G S FPGY
Sbjct: 28 WFVVHTYSGYEHKVKANLESRTQTMGMSQQIFRILVPEQEVTTIQDGEAKTSVENDFPGY 87
Query: 65 VLIKAV------MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ 115
VL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ V
Sbjct: 88 VLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRM-GMVT 146
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R V + EVG+ V + GPF+ G V +D EK + V +FGR TP EL + V+
Sbjct: 147 REVVDLDVEVGQVVKIIAGPFSGMEGTVTAIDSEKQTLEATVEVFGRETPTELDFADVDT 206
Query: 176 IV 177
++
Sbjct: 207 VL 208
>gi|329767076|ref|ZP_08258604.1| transcription termination/antitermination factor NusG [Gemella
haemolysans M341]
gi|328837801|gb|EGF87426.1| transcription termination/antitermination factor NusG [Gemella
haemolysans M341]
Length = 181
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERR 59
++ WY++ YS E K ++I R+ G++ + I +P E+ + G+K R+
Sbjct: 5 VSKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRK 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQR 116
FPGYVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ +
Sbjct: 65 TFPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLS--- 121
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + EVG+ V V GPF G V N+D + V + I GR T VEL +EK
Sbjct: 122 NVVDIDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIEIMGRETKVELELYNIEK 180
>gi|73666797|ref|YP_302813.1| transcription antitermination protein NusG [Ehrlichia canis str.
Jake]
gi|72393938|gb|AAZ68215.1| transcription antitermination protein NusG [Ehrlichia canis str.
Jake]
Length = 181
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E+K ++I GL E+ IP E V V+ +K+ +R+
Sbjct: 1 MKYEWYIIQVSSGSEEKVCQAILENSCVLGLGENFREVFIPYEEVTRVKHNKKILVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + +K P+V+ FL P ++DSE+E + ++ +V +
Sbjct: 61 SPGYVFLYMNLNENSINFVKSIPRVLNFLNNDFGVPKVISDSEMESMRKKMCQSVVDDTN 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+G+ V ++DG F FNG V+ ++++K V V+IFGR+T +E ++K+
Sbjct: 121 VVSFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|58616887|ref|YP_196086.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Gardel]
gi|58416499|emb|CAI27612.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Gardel]
Length = 179
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E K ++I G+ E+ +P E V ++ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV ++ + + + ++ PKV+ FL P ++DSE+E + ++ +V +
Sbjct: 61 SPGYVFLRMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++G+ V ++DG F FNG V+ ++E+K V V+IFGR+T +E ++K+
Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|194476830|ref|YP_002049009.1| transcription antitermination protein NusG [Paulinella
chromatophora]
gi|171191837|gb|ACB42799.1| transcription antitermination protein NusG [Paulinella
chromatophora]
Length = 228
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY VQV S+CEKK ++ R G+ + + EI IP + ++K G + + E + FPG
Sbjct: 46 WYAVQVASSCEKKVKTTLEKRAMTLGVSNRILEIAIPEIPTLKIKKDGSRQSIEEKVFPG 105
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVEA 112
YVLI+ ++ + I+ TP VI F+G +P P++ E++ I + A
Sbjct: 106 YVLIRMILDEDTMMAIRSTPHVINFVGNEAKRVNRRIRGHIDPKPLSRQEVDRIFKR--A 163
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + + G+R+ V GPF F G V V E+S++ + IFGR TPVEL + Q
Sbjct: 164 TQKKNLVKSDLDEGDRIVVIAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFAQ 223
Query: 173 VEK 175
+ K
Sbjct: 224 ISK 226
>gi|254994761|ref|ZP_05276951.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Mississippi]
gi|255002882|ref|ZP_05277846.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Puerto Rico]
gi|255004013|ref|ZP_05278814.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Virginia]
Length = 186
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQV S E+K + I R + G+ + +E+ IP E V V+ +KV R+ PGY
Sbjct: 10 WYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSS--V 121
V + ++D + ++ PKV FL P + SE+E + + + AV +S
Sbjct: 70 VFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASEVC 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG V+ V+E+K V V+IFGR+T +E + ++K+
Sbjct: 130 SFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 184
>gi|295107783|emb|CBL21736.1| transcription antitermination protein nusG [Ruminococcus obeum
A2-162]
Length = 171
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV +R G +++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D ++ +++T V GF+G G P P+T+ E+ + ++ V F
Sbjct: 65 YVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKAEDIQVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V V+ G + G++ ++ +K V + V +FGR TPVE+++ +++K
Sbjct: 119 AEGDMVVVTGGAWKDTAGVITAINTQKQTVTINVELFGRETPVEISFAEIKK 170
>gi|218133816|ref|ZP_03462620.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC
43243]
gi|217991191|gb|EEC57197.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC
43243]
Length = 194
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
PRWY+V YS E K ++SI ++ L+ + ++ +P E V +R G K ER+ F
Sbjct: 19 PRWYVVHTYSGYENKVMDSISKTIANRHLEDQILDVRVPVETVYELRANGTKKAVERKIF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE-HIMNQVEAAVQRPVSS 120
PGYVL+ VM + ++ +++ V GF+G G P P+T+ E++ + + +++
Sbjct: 79 PGYVLVNMVMNEDTWYVVRNIRGVTGFVGPGSKPVPLTEEEMKPYGLTSNDSSESDKNVV 138
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VG+ V V+ G +A +++V+E + V + V +F R TPVE+++++V+K+
Sbjct: 139 VNLKVGDIVTVTGGAWAGSVKAIQSVNESRQTVTINVDMFSRETPVEISFSEVKKM 194
>gi|297624698|ref|YP_003706132.1| NusG antitermination factor [Truepera radiovictrix DSM 17093]
gi|297165878|gb|ADI15589.1| NusG antitermination factor [Truepera radiovictrix DSM 17093]
Length = 182
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERR 59
M+ WY V Y E+K ++ R G+ + ++ +PSE V G+K R+
Sbjct: 1 MSIEWYAVHTYVGHEEKVRSNMMQRARSLGIADKIYQVVVPSEETVEHTGGGKKEVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
FPGYV ++ + D + + +++TP V GF+GT P+T E E M + A
Sbjct: 61 LFPGYVFVQMDLGDNPDEPNEAWEVVRNTPGVTGFVGTATRAVPLTPEE-EARMLGITGA 119
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ P V F VG V V+ GPFA F G+V ++ E+ +V V V IFGR TPVEL ++QV
Sbjct: 120 KETPKVKVNFSVGNIVQVTSGPFADFTGVVSELNPERGKVKVLVSIFGRETPVELDFSQV 179
Query: 174 EK 175
K
Sbjct: 180 IK 181
>gi|210623165|ref|ZP_03293615.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275]
gi|210153778|gb|EEA84784.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275]
Length = 180
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSERRFFP 62
+WY+V YS E K +I + G+++++T + +P+E VV KG + +R+ +P
Sbjct: 8 KWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKVYP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
YVLIK ++TD+ ++ +++T V GF+G G P P+++ E+ I +E Q V V
Sbjct: 68 SYVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEV--IAMGIELPAQEVVGGDV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V + +G FA G V+ V+ EK V + IFGR +PV + +EKI
Sbjct: 126 DFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIEKI 180
>gi|56416541|ref|YP_153615.1| transcription antitermination protein [Anaplasma marginale str. St.
Maries]
gi|222474909|ref|YP_002563324.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Florida]
gi|56387773|gb|AAV86360.1| transcription antitermination protein [Anaplasma marginale str. St.
Maries]
gi|222419045|gb|ACM49068.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Florida]
Length = 188
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQV S E+K + I R + G+ + +E+ IP E V V+ +KV R+ PGY
Sbjct: 12 WYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSPGY 71
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSS--V 121
V + ++D + ++ PKV FL P + SE+E + + + AV +S
Sbjct: 72 VFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASEVC 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG V+ V+E+K V V+IFGR+T +E + ++K+
Sbjct: 132 SFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 186
>gi|148284111|ref|YP_001248201.1| transcription antitermination protein [Orientia tsutsugamushi str.
Boryong]
gi|146739550|emb|CAM79279.1| transcription antitermination protein [Orientia tsutsugamushi str.
Boryong]
Length = 184
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI++ S E ++I + ++ G+ H EI IP +VV +++G+ +N ++ PG
Sbjct: 10 QWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTMPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK M D+V ++ K+ F G VT+ E++ +M Q+E Q P +
Sbjct: 69 YILIKMDMIDQVKDFMQKVVKLNRFPGNESKIVQVTEKEVQEMMVQLENKAQDPSFLEKY 128
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++GE V V+DGPF +F G ++ VD K + + + IF R T + + ++QVEK+
Sbjct: 129 QIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 181
>gi|183601875|ref|ZP_02963244.1| probable transcription antitermination protein [Bifidobacterium
animalis subsp. lactis HN019]
gi|219682789|ref|YP_002469172.1| transcription termination/antitermination factor NusG
[Bifidobacterium animalis subsp. lactis AD011]
gi|241190365|ref|YP_002967759.1| transcription antiterminator [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195771|ref|YP_002969326.1| transcription antiterminator [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183218760|gb|EDT89402.1| probable transcription antitermination protein [Bifidobacterium
animalis subsp. lactis HN019]
gi|219620439|gb|ACL28596.1| transcription termination/antitermination factor NusG
[Bifidobacterium animalis subsp. lactis AD011]
gi|240248757|gb|ACS45697.1| Transcription antiterminator [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250325|gb|ACS47264.1| Transcription antiterminator [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178088|gb|ADC85334.1| NusG [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793352|gb|ADG32887.1| Transcription antiterminator [Bifidobacterium animalis subsp.
lactis V9]
Length = 330
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ +I R+ GL+ + ++ +P E V KG+KV + R P
Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVR-VP 202
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQR 116
GYVLI+ + +++T V GF+G P+P++ E+ +M + ++ A +
Sbjct: 203 GYVLIRMYPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASHALKEAGDK 262
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P ++ V ++VG++V V+DGPF S + +V +V+ ++ V V IFGR TPVEL +
Sbjct: 263 PAAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGF 322
Query: 171 NQVEKI 176
+QV+++
Sbjct: 323 DQVQRL 328
>gi|257452912|ref|ZP_05618211.1| transcription antitermination protein nusG [Fusobacterium sp.
3_1_5R]
gi|257466707|ref|ZP_05631018.1| transcription antitermination protein nusG [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917859|ref|ZP_07914099.1| transcription antitermination protein nusG [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059454|ref|ZP_07923939.1| transcription antitermination protein nusG [Fusobacterium sp.
3_1_5R]
gi|313685130|gb|EFS21965.1| transcription antitermination protein nusG [Fusobacterium sp.
3_1_5R]
gi|313691734|gb|EFS28569.1| transcription antitermination protein nusG [Fusobacterium
gonidiaformans ATCC 25563]
Length = 196
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 105/189 (55%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+++ YS EKK + ++ G+ +V++I +P E+ + +G++ R+ FPG
Sbjct: 8 RWFMIHTYSGYEKKVKTDLEQKIETLGMTEIVSKILVPEEKSTEIVRGKEKVVFRKIFPG 67
Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ + ++ +++T V GF+G G +P P+ + E+E+I +
Sbjct: 68 YVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRVI 127
Query: 111 ---EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
E ++ + FEVG+ V V DG F + G V +D E+ +V + + IFGR+TPVE
Sbjct: 128 GYKEEVREQQLYKADFEVGDYVKVLDGGFVNKEGRVAEMDYEQGKVKIMIDIFGRMTPVE 187
Query: 168 LAYNQVEKI 176
++++ VEK+
Sbjct: 188 VSFSSVEKM 196
>gi|302521301|ref|ZP_07273643.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB78]
gi|302430196|gb|EFL02012.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB78]
Length = 272
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 85 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 144
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 145 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 204
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 205 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 264
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 265 SFDQIQK 271
>gi|295837048|ref|ZP_06823981.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB74]
gi|197698951|gb|EDY45884.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB74]
Length = 284
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 97 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 156
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 157 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 216
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 217 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 276
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 277 SFDQIQK 283
>gi|483836|dbj|BAA04281.1| NusG [Streptomyces griseus subsp. griseus NBRC 13350]
Length = 294
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPV++
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVDV 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|326802933|ref|YP_004320751.1| transcription termination/antitermination factor NusG [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650638|gb|AEA00821.1| transcription termination/antitermination factor NusG [Aerococcus
urinae ACS-120-V-Col10a]
Length = 186
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 6/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
+WY++ YS E K E++ R++ ++ + + +P E + K G++ + + FP
Sbjct: 10 QWYVLHTYSGYENKVKENLESRITSMDMEEYIFRVVVPEEEKLQKNKSGQEKVVKTQTFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV ++ +M+D+ + +++TP V GFLG+ G P P+ E+ ++ + P
Sbjct: 70 GYVFVEMIMSDEAWFVVRNTPNVTGFLGSHGQGSKPVPLLPDEVHRLLRS--QGISAPKR 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE GE V V DG F G ++ +DEE ++ + + +FGR T E+ ++QV+K+
Sbjct: 128 DISFEDGEVVEVIDGAFLGLEGRIEEIDEEHQKLKLTIEMFGRETIAEVDFDQVDKL 184
>gi|318056665|ref|ZP_07975388.1| transcription antitermination protein [Streptomyces sp. SA3_actG]
gi|318079221|ref|ZP_07986553.1| transcription antitermination protein [Streptomyces sp. SA3_actF]
Length = 303
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 116 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 175
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 235
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 296 SFDQIQK 302
>gi|331001619|ref|ZP_08325142.1| transcription termination/antitermination factor NusG
[Lachnospiraceae oral taxon 107 str. F0167]
gi|330413340|gb|EGG92707.1| transcription termination/antitermination factor NusG
[Lachnospiraceae oral taxon 107 str. F0167]
Length = 177
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 95/173 (54%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W++ YS E K I + GL + E+T+P E ++ V+ G + +S+++ FPG
Sbjct: 5 QWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI M D+ ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 65 YVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTNDELVALGYSGDSTKPEAKLHVDL 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V G + G++ V+E++ V + V +FGR T VEL + +V+K+
Sbjct: 125 KEGDMVTVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVKKM 177
>gi|116617397|ref|YP_817768.1| transcription antitermination protein nusG [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227431256|ref|ZP_03913310.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|116096244|gb|ABJ61395.1| transcription antitermination protein nusG [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227353018|gb|EEJ43190.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 192
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E K ++ R G+ + I +P + V +++ G + FPGY
Sbjct: 9 WFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKQTVENDFPGY 68
Query: 65 VLIKAV------MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ 115
VL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ V
Sbjct: 69 VLVEMATPYEDNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRM-GMVT 127
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R + VG+ V + GPF+ G+V ++D+EK + V +FGR TP EL ++ V+
Sbjct: 128 REQVDLDVAVGQTVKIISGPFSGMEGVVTSIDQEKQTLEATVAVFGRETPTELDFSDVDT 187
Query: 176 IV 177
+
Sbjct: 188 TL 189
>gi|325068005|ref|ZP_08126678.1| NusG antitermination factor [Actinomyces oris K20]
Length = 281
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 35/205 (17%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF-FP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G K R P
Sbjct: 80 QWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 139
Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------- 110
GYV ++ + +DKV+ TIKDTP V GF+G NP P+T E + Q+
Sbjct: 140 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLT---FEEAVAQLGPTPEEL 196
Query: 111 -------------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
+ A V V FEVGE V V+DGPF S + + E
Sbjct: 197 AAKEAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATIAEIHPETQ 256
Query: 152 RVHVEVVIFGRVTPVELAYNQVEKI 176
++ V + +FGR TP EL++ QV KI
Sbjct: 257 KLQVLISLFGRDTPAELSFTQVAKI 281
>gi|241889605|ref|ZP_04776903.1| transcription termination/antitermination factor NusG [Gemella
haemolysans ATCC 10379]
gi|241863227|gb|EER67611.1| transcription termination/antitermination factor NusG [Gemella
haemolysans ATCC 10379]
Length = 181
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERR 59
++ WY++ YS E K ++I R+ G++ + I +P E+ + G+K R+
Sbjct: 5 VSKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRK 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQR 116
FPGYVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ +
Sbjct: 65 TFPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLS--- 121
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + EVG+ V V GPF G V N+D + V + + GR T VEL +EK
Sbjct: 122 NVVDIDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIELMGRETKVELELYNIEK 180
>gi|226355465|ref|YP_002785205.1| transcription antitermination protein [Deinococcus deserti VCD115]
gi|226317455|gb|ACO45451.1| putative transcription antitermination protein nusG [Deinococcus
deserti VCD115]
Length = 190
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R ++ G+ + ++ P+E V +R G +K +R
Sbjct: 1 MSIEWYAVHTYVGQEDRVEQHLMERATKLGMRGTKIFQVLQPTEEAVELRDGGKKETVQR 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + ++ T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSTQEVDRLLASV 120
Query: 111 EAAVQRPVS-----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A Q PV + + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP
Sbjct: 121 GVATQAPVEEAPRVKIDLKAGDMVRVTSGPFADFSGVVSEVNLPQAKVKVLVSIFGRETP 180
Query: 166 VELAYNQVEK 175
VEL ++QV K
Sbjct: 181 VELDFSQVSK 190
>gi|240143819|ref|ZP_04742420.1| transcription termination/antitermination factor NusG [Roseburia
intestinalis L1-82]
gi|257204193|gb|EEV02478.1| transcription termination/antitermination factor NusG [Roseburia
intestinalis L1-82]
gi|291534886|emb|CBL07998.1| transcription antitermination protein nusG [Roseburia intestinalis
M50/1]
gi|291539447|emb|CBL12558.1| transcription antitermination protein nusG [Roseburia intestinalis
XB6B4]
Length = 172
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K +I + L+ + E+ +P + VV ++ G K + ++ FPG
Sbjct: 5 HWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGAKKSVSKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+TD E++ + +++ V F
Sbjct: 65 YVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMKPL------GIKKENIEVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V V+ G + G+++ ++ K V + V +FGR TPVE+++ V+
Sbjct: 119 TEGDTVVVTGGVWKDTIGVIQAMNHGKQSVTINVELFGRETPVEISFADVK 169
>gi|311063697|ref|YP_003970422.1| transcription antitermination protein NusG [Bifidobacterium bifidum
PRL2010]
gi|310866016|gb|ADP35385.1| NusG Transcription antitermination protein [Bifidobacterium bifidum
PRL2010]
Length = 280
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 105/186 (56%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R++ GL+ + +I +P E V KG+KV + R P
Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVTSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRI-P 153
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + +++T V GF+G ++P+P++ E+ ++ +
Sbjct: 154 GYVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDK 213
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 214 PAAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 273
Query: 171 NQVEKI 176
+QVEK+
Sbjct: 274 HQVEKL 279
>gi|320531938|ref|ZP_08032843.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 171 str. F0337]
gi|320135852|gb|EFW27895.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 171 str. F0337]
Length = 281
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 35/205 (17%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF-FP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G K R P
Sbjct: 80 QWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 139
Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------- 110
GYV ++ + +DKV+ TIKDTP V GF+G NP P+T E + Q+
Sbjct: 140 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLT---FEEAVAQLGPTPEEI 196
Query: 111 -------------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
+ A V V FEVGE V V+DGPF S + + E
Sbjct: 197 AAKEAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHPETQ 256
Query: 152 RVHVEVVIFGRVTPVELAYNQVEKI 176
++ V + +FGR TP EL++ QV KI
Sbjct: 257 KLQVLISLFGRDTPAELSFTQVAKI 281
>gi|239929535|ref|ZP_04686488.1| transcription antitermination protein [Streptomyces ghanaensis ATCC
14672]
Length = 266
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 79 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 138
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 139 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 198
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 199 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 258
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 259 SFDQIQK 265
>gi|326693428|ref|ZP_08230433.1| transcription termination/antitermination factor NusG [Leuconostoc
argentinum KCTC 3773]
Length = 208
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E K ++ R G+ + I +P + V + + G S FPGY
Sbjct: 25 WFVVHTYSGYEHKVKANLESRTQTMGMTEQIFRILVPEQEVTTFQDGEAKTSVENDFPGY 84
Query: 65 VLIKAV------MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ 115
VL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ V
Sbjct: 85 VLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRM-GMVT 143
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R V + EVG+ V + GPFA G V +VD EK + V +FGR TP EL + V+
Sbjct: 144 REVVDLDVEVGQIVKIIAGPFAGMEGTVVSVDAEKQTLEATVEVFGRETPTELDFADVDT 203
Query: 176 IV 177
++
Sbjct: 204 VL 205
>gi|153813451|ref|ZP_01966119.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174]
gi|149830472|gb|EDM85564.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174]
Length = 171
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P + VV +R G +++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D ++ +++T V GF+G G P P+T+ E+ + ++ V F
Sbjct: 65 YVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKNDDIQVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V V+ G + G++ + +K V + V +FGR TPVE+++ ++K
Sbjct: 119 AEGDMVVVTAGAWKDTAGVITAISTQKQTVTINVELFGRETPVEISFADIKK 170
>gi|332182027|gb|AEE17715.1| NusG antitermination factor [Treponema brennaborense DSM 12168]
Length = 185
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ Y+ E K +I L L V +I +P E VV ++ G+K S ++
Sbjct: 1 MAKGWYILHTYTGYEGKIERTIRSLLETGDLSSEAVLDIKVPVEEVVEIKDGKKKTSTKK 60
Query: 60 FFPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAA 113
F PGY++++ + D V I+ V GF+GTG E P P++ E + ++ +
Sbjct: 61 FLPGYIMLELDLPDIGWKAVCSVIRRIQGVTGFVGTGPSERPRPISLEEAKSLLQKSGEI 120
Query: 114 VQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + F VGE+V + +G FA+F+G ++ V+ EK+++ V V IFGR TPVE+
Sbjct: 121 KGEKTARLKQSFSVGEQVKIIEGAFATFSGTIEEVNLEKNKLRVMVQIFGRATPVEVDLL 180
Query: 172 QVEKI 176
QVEKI
Sbjct: 181 QVEKI 185
>gi|57238898|ref|YP_180034.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Welgevonden]
gi|58578830|ref|YP_197042.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Welgevonden]
gi|57160977|emb|CAH57883.1| transcription antitermination protein NusG [Ehrlichia ruminantium
str. Welgevonden]
gi|58417456|emb|CAI26660.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Welgevonden]
Length = 179
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E K ++I G+ E+ +P E V ++ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + ++ PKV+ FL P ++DSE+E + ++ +V +
Sbjct: 61 SPGYVFLHMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++G+ V ++DG F FNG V+ ++E+K V V+IFGR+T +E ++K+
Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|15606944|ref|NP_214326.1| transcription antitermination protein NusG [Aquifex aeolicus VF5]
gi|14423773|sp|O67757|NUSG_AQUAE RecName: Full=Transcription antitermination protein nusG
gi|28373569|pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373570|pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373571|pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373572|pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373573|pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group I222
gi|29726735|pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726736|pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726737|pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726738|pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726739|pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
gi|2984191|gb|AAC07722.1| transcription antitermination protein NusG [Aquifex aeolicus VF5]
Length = 248
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV--RKGRKVNSERRFFPGYVLIKA 69
N E K VES+ G + I+ P +++ + K+ + + FPGY+LIKA
Sbjct: 89 ENGEVKVVESVEGDTCVNA-----PPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKA 143
Query: 70 VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
M DK+ I+ TP V + G P P+ + E+++I+NQ++ V +P S V FE G++V
Sbjct: 144 HMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGV-KP-SKVEFEKGDQV 201
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +GPF +F G V+ V EK ++ V + IFGR+TPVEL ++QVEKI
Sbjct: 202 RVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI 248
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
+ +WY +QV E +A E++ L GL LV E+ +P+E V +R
Sbjct: 9 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIR 57
>gi|325972673|ref|YP_004248864.1| NusG antitermination factor [Spirochaeta sp. Buddy]
gi|324027911|gb|ADY14670.1| NusG antitermination factor [Spirochaeta sp. Buddy]
Length = 186
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 107/190 (56%), Gaps = 17/190 (8%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH--LVTEITIPSERVVSVRKGRKVNSER 58
M WY+V YS E+K +E I ++ + D + T++ +P E VV V+ G + + +R
Sbjct: 1 MAKGWYVVHTYSGYEQK-IERIINKMRETDTDFALVCTDVKVPFETVVEVKDGVRRDVKR 59
Query: 59 RFFPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEA 112
+ PGY+L++ + D + T +K V GF+ ++ P P+ +E++ + +
Sbjct: 60 KILPGYILVELDLPDHSWKTWCSQVKRIQGVTGFVTPNDSVKPQPLNAAEVKSLFQKTGD 119
Query: 113 AVQRPVSSVF-----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
P VF F +GE+V + +GPF SF G+++ V+ EK+R+ V V IFGR TPVE
Sbjct: 120 L---PAEKVFKPKQSFSIGEQVRIIEGPFDSFTGVIEEVNLEKARMRVSVGIFGRSTPVE 176
Query: 168 LAYNQVEKIV 177
+ + QVEKI+
Sbjct: 177 VDFLQVEKIL 186
>gi|289769765|ref|ZP_06529143.1| transcription antitermination protein nusG [Streptomyces lividans
TK24]
gi|289699964|gb|EFD67393.1| transcription antitermination protein nusG [Streptomyces lividans
TK24]
Length = 295
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 108 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 167
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 168 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 227
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 228 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 287
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 288 SFDQIQK 294
>gi|167768207|ref|ZP_02440260.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1]
gi|317499074|ref|ZP_07957354.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167709731|gb|EDS20310.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1]
gi|291560226|emb|CBL39026.1| transcription antitermination protein nusG [butyrate-producing
bacterium SSC/2]
gi|316893650|gb|EFV15852.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 181
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I + L + E+ +P E VV +R G K R+ FPGY
Sbjct: 6 WYVVHTYSGYENKVKVDIEKTIENRKLQDEILEVRVPLEDVVEMRNGVKKQVSRKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPVSS 120
VLI +M D ++ +++T V GF+G G P P+T +E++ + Q+ Q R
Sbjct: 66 VLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGIQIGGEQQETPAREKIE 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG+ + V+ G + V ++E K V +EV +FGR T VE+ + ++K
Sbjct: 126 LDIEVGDMIVVTSGAWEGTTSAVTAINESKQTVTIEVEMFGRATSVEIDFLDIKK 180
>gi|288573182|ref|ZP_06391539.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568923|gb|EFC90480.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 184
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIVQ Y+ E K ++ R++ G++ + ++ +P E V V+ G+ ++ FP
Sbjct: 8 KWYIVQTYAGYENKVKANLEQRIATMGMEDKIFDVLVPVEEKVVVKDGKSKKVTKKLFPS 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS 119
YVL++ VM D+ ++ ++ TP V GF+G+G +P P++D E++ IM+++ RPV
Sbjct: 68 YVLVEMVMEDQPWYVVRHTPGVTGFVGSGNHPIPLSDREVDDIMSKIGLSGSKKNNRPVF 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ + V GPF G + V EK +V V +FGR T VE+ Y +++K+
Sbjct: 128 EMDLKKGDVIKVKSGPFEGAVGPIIEVLPEKGKVKFSVSVFGRDTLVEIDYIEIDKL 184
>gi|21223029|ref|NP_628808.1| transcription antitermination protein [Streptomyces coelicolor
A3(2)]
gi|256785873|ref|ZP_05524304.1| transcription antitermination protein [Streptomyces lividans TK24]
gi|19858845|sp|P36266|NUSG_STRCO RecName: Full=Transcription antitermination protein nusG
gi|7248341|emb|CAB77421.1| transcription antitermination protein [Streptomyces coelicolor
A3(2)]
Length = 300
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 293 SFDQIQK 299
>gi|116513058|ref|YP_811965.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. cremoris SK11]
gi|116108712|gb|ABJ73852.1| Transcription antiterminator [Lactococcus lactis subsp. cremoris
SK11]
Length = 185
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q Y+ E+K E + R + + + IP+E + + G+ + E FPGY
Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKDVEENLFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ MTD+ + +++TP V GF+G+ N P+P+ + EI+ I+ + V+ V
Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+RV + DG F+ F + ++ +K + V+ +FGR TPVEL +Q+E I
Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGDKLTLTVD--MFGRATPVELDMHQIEDI 183
>gi|291437861|ref|ZP_06577251.1| transcription antitermination protein nusG [Streptomyces ghanaensis
ATCC 14672]
gi|291340756|gb|EFE67712.1| transcription antitermination protein nusG [Streptomyces ghanaensis
ATCC 14672]
Length = 294
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|971288|dbj|BAA06985.1| nusG [Streptomyces coelicolor A3(2)]
Length = 300
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 293 SFDQIQK 299
>gi|239980079|ref|ZP_04702603.1| putative transcription antitermination factor NusG [Streptomyces
albus J1074]
gi|291451933|ref|ZP_06591323.1| NusG protein [Streptomyces albus J1074]
gi|291354882|gb|EFE81784.1| NusG protein [Streptomyces albus J1074]
Length = 287
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 280 SFDQIQK 286
>gi|302559020|ref|ZP_07311362.1| transcription termination/antitermination factor NusG [Streptomyces
griseoflavus Tu4000]
gi|302476638|gb|EFL39731.1| transcription termination/antitermination factor NusG [Streptomyces
griseoflavus Tu4000]
Length = 285
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 98 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 157
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 158 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 217
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 218 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 277
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 278 SFDQIQK 284
>gi|317495156|ref|ZP_07953526.1| transcription termination/antitermination factor NusG [Gemella
moribillum M424]
gi|316914578|gb|EFV36054.1| transcription termination/antitermination factor NusG [Gemella
moribillum M424]
Length = 181
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFFPG 63
WY++ YS E K ++I R+ ++ + I +P E+ + G++ R+ FPG
Sbjct: 9 WYVIHTYSGYENKVKDNIEKRVESLNMEDKIFRIVVPEEKETIITPTGKRKEVNRKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ + V
Sbjct: 69 YVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLS---SVVD 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V EVG+ V V GPF G V N+D +V V + + GR T VEL +EK
Sbjct: 126 VDIEVGDHVRVISGPFVGMEGKVVNIDLNNYKVDVMIELMGRETKVELELYNIEK 180
>gi|310777978|ref|YP_003966311.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926]
gi|309747301|gb|ADO81963.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926]
Length = 198
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 18/193 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +W+++ YS EKK + ++ +VT I +P E V +R+G+K R+
Sbjct: 5 IVKKWFMIHTYSGYEKKVKTDLEQKIETLEKGEIVTRILVPEEESVELRRGKKKVVARKL 64
Query: 61 FPGYVLIKAVMT-------------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI- 106
FPGYV+++ ++T ++ I++T V GF+G G +P P+ D E+E+I
Sbjct: 65 FPGYVMVEMIVTREESADGINFKVDSDAWYIIRNTNGVTGFVGVGSDPIPMEDEEVENIF 124
Query: 107 ----MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+N + + + F VG+ V + +G + G V +D E RV V V +FGR
Sbjct: 125 RVIGLNDGDDKEVKETVQINFSVGDYVELLEGGLSGHGGKVAEIDMEHKRVKVMVEMFGR 184
Query: 163 VTPVELAYNQVEK 175
+TPVE+ ++ V+K
Sbjct: 185 MTPVEVGFDGVKK 197
>gi|255324702|ref|ZP_05365816.1| transcription antitermination protein NusG [Corynebacterium
tuberculostearicum SK141]
gi|255298177|gb|EET77480.1| transcription antitermination protein NusG [Corynebacterium
tuberculostearicum SK141]
Length = 306
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+V+ + G+K +R+ PG
Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230
Query: 108 ---NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
QV A ++ V+ + FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 231 AEGEQVVAMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 291 RETPVELSPTEIERI 305
>gi|325283114|ref|YP_004255655.1| NusG antitermination factor [Deinococcus proteolyticus MRP]
gi|324314923|gb|ADY26038.1| NusG antitermination factor [Deinococcus proteolyticus MRP]
Length = 189
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R + G L + ++ PSE+ V +R G +K ER
Sbjct: 1 MSIEWYAVHTYIGQEDRVQQHLLERARKLGMLGTKIFQVLQPSEQAVELRDGGKKETVER 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + +++T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDIEDDDAPGELGESWEVVRNTNGVTGFVGTATYPVPLSPDEVQRLLASV 120
Query: 111 EAA----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
V+ P V + G+ V V GPFA FNG+V V+ +++V V V IFGR TPV
Sbjct: 121 GVGTVPKVEAPKVQVDLKPGDMVKVKSGPFADFNGVVSEVNAAQAKVKVLVSIFGRETPV 180
Query: 167 ELAYNQVEK 175
EL + QV K
Sbjct: 181 ELDFAQVSK 189
>gi|293189019|ref|ZP_06607751.1| transcription termination/antitermination factor NusG [Actinomyces
odontolyticus F0309]
gi|292822050|gb|EFF80977.1| transcription termination/antitermination factor NusG [Actinomyces
odontolyticus F0309]
Length = 256
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K
Sbjct: 68 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN------QVEAA 113
PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ EAA
Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187
Query: 114 VQRPVS----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+P FEVGE V V+DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 248 FDQVEKL 254
>gi|154508676|ref|ZP_02044318.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC
17982]
gi|153798310|gb|EDN80730.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC
17982]
Length = 256
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K
Sbjct: 68 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN------QVEAA 113
PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ EAA
Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187
Query: 114 VQRPVS----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+P FEVGE V V+DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 248 FDQVEKL 254
>gi|325964183|ref|YP_004242089.1| transcription termination/antitermination factor NusG [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470270|gb|ADX73955.1| transcription termination/antitermination factor NusG [Arthrobacter
phenanthrenivorans Sphe3]
Length = 274
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 92 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 151
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS- 119
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V +A +PV+
Sbjct: 152 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 211
Query: 120 ------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV
Sbjct: 212 QHQTPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 271
Query: 174 EKI 176
KI
Sbjct: 272 TKI 274
>gi|260437417|ref|ZP_05791233.1| transcription termination/antitermination factor NusG [Butyrivibrio
crossotus DSM 2876]
gi|292810049|gb|EFF69254.1| transcription termination/antitermination factor NusG [Butyrivibrio
crossotus DSM 2876]
Length = 175
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L+ + E+++P + V ++ G K +++ FPGY
Sbjct: 10 WYVVHTYSGYENKVKANIEKTIENRHLEDQILEVSVPLQDAVEIKNGVKKQVQKKIFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI ++ D ++ +++T V GF+G G P P+TD E MN + ++ + + +
Sbjct: 70 VLIHMILNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEE----MNNLGISIGKVAAE--YS 123
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V G + + G +K++++ K V + V +FGR TPVEL + ++ I
Sbjct: 124 LGDTVMAISGVWENTVGEIKSINDNKQTVTITVDMFGRETPVELGFTEIRHI 175
>gi|283780331|ref|YP_003371086.1| NusG antitermination factor [Pirellula staleyi DSM 6068]
gi|283438784|gb|ADB17226.1| NusG antitermination factor [Pirellula staleyi DSM 6068]
Length = 267
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WYI++V N E S+ R++ +GL+ ++ +P+E V K G++ +++ +PG
Sbjct: 92 WYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKIYPG 151
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQRPVSS 120
Y+L+ V D+ + +++T + F G P+P+ ++E I+ +E + ++
Sbjct: 152 YILVNMVFNDETWFIVRETSGIGDFTGAMGKPTPMDPKDVERILRSSKMLEEDTNQVRTA 211
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VG+RV V +G F +F G + +D+ RV V + IFGR TPVEL + Q+E +
Sbjct: 212 IPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267
>gi|88658378|ref|YP_507745.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Arkansas]
gi|88599835|gb|ABD45304.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Arkansas]
Length = 179
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E+K ++I GL+ E+ IP E + V+ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + I+ P+V+ FL P ++++E+E + ++ +V S
Sbjct: 61 SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+G+ V ++DG F FNG V+ ++++K V V+IFGR+T +E ++K+
Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|260579298|ref|ZP_05847181.1| transcription antitermination protein [Corynebacterium jeikeium
ATCC 43734]
gi|258602597|gb|EEW15891.1| transcription antitermination protein [Corynebacterium jeikeium
ATCC 43734]
Length = 322
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E VV +R G++ +R+ PGY
Sbjct: 123 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 182
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112
VL++ + D + ++DTP V F+G P+PV E+ + + EA
Sbjct: 183 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 242
Query: 113 AVQRPVSS---------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
A VS+ V +E GE V + GPFAS + + +D E +R+ V
Sbjct: 243 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 302
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 303 SIFGRETPVELEFDQVEKL 321
>gi|257462552|ref|ZP_05626963.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
gi|317060205|ref|ZP_07924690.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
gi|313685881|gb|EFS22716.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
Length = 194
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 103/187 (55%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+++ YS EKK + ++ G+ +V++I +P E+ + +G++ R+ FPG
Sbjct: 8 RWFMIHTYSGYEKKVKTDLEQKIETLGMKEIVSKILVPEEKSTEIVRGKEKVVFRKIFPG 67
Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ + ++ +++T V GF+G G +P P+ + E+E+I +
Sbjct: 68 YVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRVI 127
Query: 111 EAAVQ-RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ R F++G+ V V DG F + G V +D E+ +V + + IFGR+TPVE++
Sbjct: 128 GYEQEVREFHKADFQIGDYVKVLDGAFVNKEGKVAEMDYEQGKVKIMIDIFGRMTPVEVS 187
Query: 170 YNQVEKI 176
++ VEK+
Sbjct: 188 FSSVEKM 194
>gi|308178151|ref|YP_003917557.1| transcription antitermination protein NusG [Arthrobacter
arilaitensis Re117]
gi|307745614|emb|CBT76586.1| transcription antitermination protein NusG [Arthrobacter
arilaitensis Re117]
Length = 275
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 12/184 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E + ++ R+ +D + +I +P E VV V+ ++ R PGY
Sbjct: 91 WFVIHTYAGYENRVKVNLETRIQTQDMDEFIFDIQVPMEEVVEVKNTQRKIVRRVRIPGY 150
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSS--- 120
VL++ +TD + ++ TP V GF+G +P+P++ E+ ++ + V++P +S
Sbjct: 151 VLVRMELTDASWGVVRHTPGVTGFVGNAHDPNPLSLDEVFSMLEHTIVDPVEQPSASKPG 210
Query: 121 --------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V FEVGE V V+DGPF + + + + +++ V V IF R TPV L +NQ
Sbjct: 211 RAPITEVTVDFEVGESVIVNDGPFETMPATISEIKLDAAQLVVLVSIFERETPVTLNFNQ 270
Query: 173 VEKI 176
V KI
Sbjct: 271 VTKI 274
>gi|297519742|ref|ZP_06938128.1| transcription antitermination protein NusG [Escherichia coli OP50]
Length = 114
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQ 109
YVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114
>gi|319950479|ref|ZP_08024392.1| transcription antitermination protein NusG [Dietzia cinnamea P4]
gi|319435838|gb|EFV91045.1| transcription antitermination protein NusG [Dietzia cinnamea P4]
Length = 328
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 16/188 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E K ++ R G + + ++ +P E V+ G+K + R+ PGY
Sbjct: 140 WFVIHSYAGYENKVKANLETRAVTLGAEDKIFQVEVPVEEFTEVKNGQKKVANRKVLPGY 199
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIM----NQVEAAVQR 116
VL++ + D+ + +++TP V GF+ G P+P++ S++ + + AA
Sbjct: 200 VLVRMELDDESWGVVRNTPGVTGFVSATGGAAGKPTPLSLSDVAKFLAPKPEKKSAAAGT 259
Query: 117 PVSSVF--------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
F F+VGE V V DGPFA+ + VD ++ V V IFGR TPVEL
Sbjct: 260 ADDQGFAPQAVEVEFQVGESVTVMDGPFATLPASISEVDPAAQKLKVLVSIFGRETPVEL 319
Query: 169 AYNQVEKI 176
+ QVEKI
Sbjct: 320 GFTQVEKI 327
>gi|227514010|ref|ZP_03944059.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC
14931]
gi|227087654|gb|EEI22966.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC
14931]
Length = 150
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
G++ + ++ +P E V V+ G+ E + FPGYVL++ VMTD+ ++ ++TP V GFL
Sbjct: 2 GMEDYIFQVVVPEETVRQVKDGQAKEVEEKTFPGYVLVEMVMTDQAWYVARNTPGVTGFL 61
Query: 90 GT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
G+ G P+P+ E++ I+ ++ V R + + VG+ V + G FA +G V V
Sbjct: 62 GSHGGGSKPTPLLPEEVDRILVRMGQDVAR--TDINVAVGDNVKIIAGAFADLSGKVIEV 119
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
D +K ++ VE+ +FGR+T EL +NQ++ +
Sbjct: 120 DRDKLKLKVEIEMFGRLTTTELDFNQIDTV 149
>gi|119963130|ref|YP_948675.1| transcription termination/antitermination factor NusG [Arthrobacter
aurescens TC1]
gi|119949989|gb|ABM08900.1| transcription termination/antitermination factor NusG [Arthrobacter
aurescens TC1]
Length = 300
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 118 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS- 119
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V +A +PV+
Sbjct: 178 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEQGKPVNK 237
Query: 120 ------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV
Sbjct: 238 QNQAPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 297
Query: 174 EKI 176
KI
Sbjct: 298 TKI 300
>gi|297201705|ref|ZP_06919102.1| transcription termination/antitermination factor NusG [Streptomyces
sviceus ATCC 29083]
gi|197710922|gb|EDY54956.1| transcription termination/antitermination factor NusG [Streptomyces
sviceus ATCC 29083]
Length = 287
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 280 SFDQIQK 286
>gi|68536954|ref|YP_251659.1| transcription antitermination protein NusG [Corynebacterium
jeikeium K411]
gi|68264553|emb|CAI38041.1| transcription antitermination protein [Corynebacterium jeikeium
K411]
Length = 316
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E VV +R G++ +R+ PGY
Sbjct: 117 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112
VL++ + D + ++DTP V F+G P+PV E+ + + EA
Sbjct: 177 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 236
Query: 113 AVQRPVSS---------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
A VS+ V +E GE V + GPFAS + + +D E +R+ V
Sbjct: 237 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 296
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 297 SIFGRETPVELEFDQVEKL 315
>gi|300172658|ref|YP_003771823.1| transcription antitermination protein NusG [Leuconostoc
gasicomitatum LMG 18811]
gi|299887036|emb|CBL91004.1| Transcription antitermination protein NusG [Leuconostoc
gasicomitatum LMG 18811]
Length = 209
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E K ++ R G+ + I +P + V +++ G S FPGY
Sbjct: 26 WFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKTSVENDFPGY 85
Query: 65 VLIKAV------MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ 115
VL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ V
Sbjct: 86 VLVEMATPHDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRM-GMVT 144
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R V + EVG+ V + GPF+ V VD EK + V +FGR TP EL + V+
Sbjct: 145 REVVDLAVEVGQTVKIITGPFSGMEATVTMVDVEKQTLEATVEVFGRETPTELDFADVDT 204
Query: 176 IV 177
++
Sbjct: 205 VL 206
>gi|302876547|ref|YP_003845180.1| NusG antitermination factor [Clostridium cellulovorans 743B]
gi|307687220|ref|ZP_07629666.1| transcription antitermination protein NusG [Clostridium
cellulovorans 743B]
gi|302579404|gb|ADL53416.1| NusG antitermination factor [Clostridium cellulovorans 743B]
Length = 173
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V +S E K ++ + L + +I IP V + G++ + ++ PG
Sbjct: 6 KWYVVNTFSGYENKVKATLEKSIDNRNLHNYFYDIQIPMSEEVEEKDGKQKVALKKLLPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK +MTD ++ +++T V GF+G P +T+ EI+ + + ++V
Sbjct: 66 YVFIKMIMTDDTWYIVRNTRGVSGFVGPAGKPVSLTNEEIDRM------GINDTPATVDM 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V ++ G FN + V+ EK ++ V +FGR TP EL + QVEK+
Sbjct: 120 EVGETVLITSGALKGFNAQITEVNIEKQKIKGLVDMFGRETPAELDFAQVEKL 172
>gi|325570755|ref|ZP_08146481.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Enterococcus casseliflavus ATCC 12755]
gi|325156601|gb|EGC68781.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Enterococcus casseliflavus ATCC 12755]
Length = 197
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ R G+ + + +P E + G+ + FPGY
Sbjct: 25 WYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTFPGY 84
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + V
Sbjct: 85 VLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVELEV 144
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI
Sbjct: 145 --EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 197
>gi|28572873|ref|NP_789653.1| transcription antitermination protein NusG [Tropheryma whipplei
TW08/27]
gi|28411006|emb|CAD67391.1| transcription antitermination protein NusG [Tropheryma whipplei
TW08/27]
Length = 205
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V + E++A ++ R+ D + ++ +P E VV +R G++ R PG
Sbjct: 24 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQRP 117
YVL++ + + + +++TP + GF+G P P++ E+ ++ +Q A +R
Sbjct: 84 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 143
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VS V EVGE V + G FA G + + E R+ V + +F R TPVELA++QVEK
Sbjct: 144 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 203
>gi|29831452|ref|NP_826086.1| transcription antitermination protein [Streptomyces avermitilis
MA-4680]
gi|29608567|dbj|BAC72621.1| putative transcription antitermination protein [Streptomyces
avermitilis MA-4680]
Length = 287
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 16/188 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PG
Sbjct: 99 EWYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPG 158
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------- 110
YVL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 159 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAE 218
Query: 111 -EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVE
Sbjct: 219 GKPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVE 278
Query: 168 LAYNQVEK 175
L+++Q++K
Sbjct: 279 LSFDQIQK 286
>gi|15674086|ref|NP_268261.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. lactis Il1403]
gi|281492764|ref|YP_003354744.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. lactis KF147]
gi|14423796|sp|Q9CDV7|NUSG_LACLA RecName: Full=Transcription antitermination protein nusG
gi|12725158|gb|AAK06202.1|AE006438_16 transcription antitermination protein [Lactococcus lactis subsp.
lactis Il1403]
gi|281376416|gb|ADA65902.1| Transcription antitermination protein NusG [Lactococcus lactis
subsp. lactis KF147]
gi|326407637|gb|ADZ64708.1| transcriptional antiterminator NusG [Lactococcus lactis subsp.
lactis CV56]
Length = 185
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q Y+ E+K E + R + + + IP+E + + G+ E FPGY
Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ MTD+ + +++TP V GF+G+ N P+P+ + EI+ I+ + V+ V
Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+RV + DG F+ F + ++ +K + V+ +FGR TPVEL +Q+E I
Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGDKLTLTVD--MFGRATPVELDMHQIEDI 183
>gi|257867884|ref|ZP_05647537.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30]
gi|257874213|ref|ZP_05653866.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10]
gi|257876778|ref|ZP_05656431.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20]
gi|257801967|gb|EEV30870.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30]
gi|257808377|gb|EEV37199.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10]
gi|257810944|gb|EEV39764.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20]
Length = 180
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ R G+ + + +P E + G+ + FPGY
Sbjct: 8 WYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + V
Sbjct: 68 VLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVELEV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI
Sbjct: 128 --EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180
>gi|320095594|ref|ZP_08027257.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 178 str. F0338]
gi|319977502|gb|EFW09182.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 178 str. F0338]
Length = 309
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K R
Sbjct: 121 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDSIFSVEVPDEYVMEYRGTAKKRVRRV 180
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQR- 116
PGY ++ ++ Y +K+TP V GF+G NP P++ E+ ++ N +E A ++
Sbjct: 181 RIPGYAIVCMDFNEESYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEKK 240
Query: 117 -----PVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
PV + FEVGE V V DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 241 KDKPAPVQEIRTAFEVGETVTVIDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 300
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 301 FDQVEKL 307
>gi|227510708|ref|ZP_03940757.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227513723|ref|ZP_03943772.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC
11577]
gi|227083042|gb|EEI18354.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC
11577]
gi|227189829|gb|EEI69896.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 183
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ R G+ L+ + +P +E +KG+ + FP
Sbjct: 8 KWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRVVVPETEEHEVDKKGKDKVKMDKTFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + +
Sbjct: 68 GYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHEDL 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V VG+ V + DG F NG V +D EK R+ V + +FGR T EL +NQV+
Sbjct: 128 DV--NVGDSVKIVDGAFTGLNGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQVD 180
>gi|28493682|ref|NP_787843.1| transcription antitermination protein [Tropheryma whipplei str.
Twist]
gi|28476724|gb|AAO44812.1| transcription antitermination protein [Tropheryma whipplei str.
Twist]
Length = 217
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V + E++A ++ R+ D + ++ +P E VV +R G++ R PG
Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQRP 117
YVL++ + + + +++TP + GF+G P P++ E+ ++ +Q A +R
Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 155
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VS V EVGE V + G FA G + + E R+ V + +F R TPVELA++QVEK
Sbjct: 156 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 215
>gi|295397927|ref|ZP_06807984.1| transcription termination/antitermination factor NusG [Aerococcus
viridans ATCC 11563]
gi|294973812|gb|EFG49582.1| transcription termination/antitermination factor NusG [Aerococcus
viridans ATCC 11563]
Length = 184
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-RFFPG 63
WY++ Y+ E K +++ R++ ++ + + +P E V K K N + + FPG
Sbjct: 11 WYVIHTYAGYENKVKQNLEMRITSMDMEDYIYRVIVPEEEHVEKTKSGKENIVKIKNFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQV-EAAVQRPVS 119
YVL++ +M+D+ + +++TP V GFLG+ G P+P+ E+ +I++ + E R +S
Sbjct: 71 YVLVEMIMSDEAWFVVRNTPGVTGFLGSHGQGSKPTPLLPDEVRNILSSLGEGGRNRDIS 130
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F++ E V V DG F G V+ +D E ++ + V +FGR T E+ Y+QV+K
Sbjct: 131 ---FDIDEVVKVIDGAFDGMEGRVQEIDAEHGKLKLTVEMFGRETLAEVDYDQVDK 183
>gi|125625148|ref|YP_001033631.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. cremoris MG1363]
gi|124493956|emb|CAL98951.1| transcription antitermination protein nusG [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071956|gb|ADJ61356.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. cremoris NZ9000]
Length = 185
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q Y+ E+K E + R + + + IP+E + + G+ + E FPGY
Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKIKDVEENLFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ MTD+ + +++TP V GF+G+ N P+P+ + EI+ I+ + V+ V
Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKIVREIDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+RV + DG F+ F + ++ +K + V+ +FGR TPVEL +Q+E I
Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGDKLTLTVD--MFGRATPVELDMHQIEDI 183
>gi|213019489|ref|ZP_03335295.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994911|gb|EEB55553.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 256
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62
+WYI++V SN E+K + I R +++ + IP E + + K N++RR FP
Sbjct: 78 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 137
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D+EI + + + A +
Sbjct: 138 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 197
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S +E GE+V ++DG F +F G V V++EK +++EV I G+ T +EL QVEKI
Sbjct: 198 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 254
>gi|257470018|ref|ZP_05634110.1| transcription antitermination protein nusG [Fusobacterium ulcerans
ATCC 49185]
gi|317064243|ref|ZP_07928728.1| transcription antitermination protein nusG [Fusobacterium ulcerans
ATCC 49185]
gi|313689919|gb|EFS26754.1| transcription antitermination protein nusG [Fusobacterium ulcerans
ATCC 49185]
Length = 199
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 19/194 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +W+++ YS EKK + ++ G+ +VT++ +P E + +G+K R+
Sbjct: 5 LVKKWFMIHTYSGYEKKVKTDLEQKIETLGIGDIVTKVLVPEEETIEEVRGKKKTVARKI 64
Query: 61 FPGYVLIKAVMT-------------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
FPGYV+++ V T ++ +++T V GF+G G +P P+ D E+ +I
Sbjct: 65 FPGYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVLNIF 124
Query: 108 NQVEAAV------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + + V + F +GE V + G FA G V +D E+ +V V + +FG
Sbjct: 125 RVIGYDIPEEEKENKEVVKINFGLGEFVKILGGGFAGHEGKVAEIDMEQKKVKVMIEMFG 184
Query: 162 RVTPVELAYNQVEK 175
R+TPVE+ +N VEK
Sbjct: 185 RMTPVEVDFNSVEK 198
>gi|320527651|ref|ZP_08028825.1| transcription termination/antitermination factor NusG
[Solobacterium moorei F0204]
gi|320131972|gb|EFW24528.1| transcription termination/antitermination factor NusG
[Solobacterium moorei F0204]
Length = 196
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 6/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVSVRKGRKVNSERRFFP 62
RWY+V Y+ E + E++ R+ G+ + I + E V + G+ + + FP
Sbjct: 19 RWYVVNTYAGHENRVKENLEKRVETMGIQDSLFRIVVAEETETVIGKDGKPKDVKTNVFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ MTD+ ++ +++TP V GF+G+ G P PV E+E I+ ++ + ++
Sbjct: 79 GYLFVEMKMTDEAWYVVRNTPGVTGFIGSSGGGAKPFPVAPDEMEAILRRIGQSDKK--I 136
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ FE+G+ V + GPF+ G V +++++ +V +++FGR TP ++ Y +EK+
Sbjct: 137 SIDFEIGDTVKILAGPFSGMEGRVASLNDQTQTANVLIMLFGRETPTDINYGDLEKV 193
>gi|329769657|ref|ZP_08261061.1| transcription termination/antitermination factor NusG [Gemella
sanguinis M325]
gi|328838412|gb|EGF88021.1| transcription termination/antitermination factor NusG [Gemella
sanguinis M325]
Length = 181
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFFPG 63
WY++ YS E K +++ R+ ++ + I +P E+ + G+K R+ FPG
Sbjct: 9 WYVIHTYSGYENKVKDNLEKRVESLNMEDKIFRIVVPEEKETIITPTGKKKEVNRKTFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ + V
Sbjct: 69 YVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLS---SVVD 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ E+G+ V V GPF +G V N+D + V + + GR T VEL +EK
Sbjct: 126 IDIELGDHVRVISGPFVDMDGKVVNIDTNNFKADVMIELMGRETKVELELYNIEK 180
>gi|190570973|ref|YP_001975331.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357245|emb|CAQ54667.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 278
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62
+WYI++V SN E+K + I R +++ + IP E + + K N++RR FP
Sbjct: 100 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D+EI + + + A +
Sbjct: 160 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S +E GE+V ++DG F +F G V V++EK +++EV I G+ T +EL QVEKI
Sbjct: 220 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 276
>gi|260585128|ref|ZP_05852869.1| transcription termination/antitermination factor NusG
[Granulicatella elegans ATCC 700633]
gi|260157216|gb|EEW92291.1| transcription termination/antitermination factor NusG
[Granulicatella elegans ATCC 700633]
Length = 184
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ YS E K +I R+S G++ + + +P E V V+ G++ + + FPG
Sbjct: 7 EWYVLHTYSGYENKVKSNIELRISSMGMEENIFRVIVPEEEEVEVKDGKEKVTINKTFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ +M+D+ ++ +++TP V GF+G+ G PSP+ E++ ++ ++ PV
Sbjct: 67 YVLVEMIMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVDTLLGRLGVPTHAPV-D 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +VG+ V +++G F +G V +D+EK +V V + +FGR T EL + QV++
Sbjct: 126 LHAKVGDYVIITEGAFDGMSGKVTEIDDEKQKVKVTIEMFGRETIAELEFYQVKE 180
>gi|237786433|ref|YP_002907138.1| transcription antitermination protein NusG [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759345|gb|ACR18595.1| transcription antitermination protein [Corynebacterium
kroppenstedtii DSM 44385]
Length = 353
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQ YS E K + R G+D + E+ +P E V V+ G++ + + PGY
Sbjct: 155 WYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPGY 214
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
VL++ + D + I+DTP + F+G +P+PV E+ + E A Q
Sbjct: 215 VLMRIELDDASWSVIRDTPGITSFVGNEGHPTPVKIREVAKFLLPPETATQKAEQEGEEP 274
Query: 116 --------------RPVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
RP + V +EVGE V V GPFAS + + +D E S++ V
Sbjct: 275 AAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALVS 334
Query: 159 IFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEKI
Sbjct: 335 IFGRETPVELDFDQVEKI 352
>gi|110004182|emb|CAK98520.1| putative transcription antitermination nusg transmembrane protein
[Spiroplasma citri]
Length = 217
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E + + + R+ + +V +I + E V + + G+ + E+ +PG
Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ----- 115
Y+ I +M D+ ++ +++T V GF+G+ G P P+TD E ++++ AA +
Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151
Query: 116 -RPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ V VF FEV + V + G F G V +D K V + +FGR+TP E+ ++
Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211
Query: 172 QVEKI 176
Q EKI
Sbjct: 212 QCEKI 216
>gi|229824601|ref|ZP_04450670.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271]
gi|229785972|gb|EEP22086.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271]
Length = 179
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K E+I R + + I +P E VV G + +
Sbjct: 1 MSKEWYVLHTYSGYENKVKENIEMRTESMNMQDHIFRIAVPEEEVVEKTDGVEKKKVEKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ M+D+ + +++TP V GF+G+ G PSP+ EI I+ QR
Sbjct: 61 FPGYVLVEMEMSDEAWFIVRNTPGVTGFVGSHGAGSKPSPLLPEEIAAILGDAPMPSQRV 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V E G+ V + DG F+ +G ++ +D + ++ V + +FGR T EL + QV+K
Sbjct: 121 ELNV--EEGDYVSIIDGAFSGLSGQIEEIDRDHDKLKVVIEMFGRETVAELDFVQVKK 176
>gi|220913452|ref|YP_002488761.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6]
gi|219860330|gb|ACL40672.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6]
Length = 267
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 85 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 144
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS- 119
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V +A +PV+
Sbjct: 145 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 204
Query: 120 ------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV
Sbjct: 205 QHQAPVDVDFEVGESVIVKEGPFETLPATISEIKVESQTLVVLVSIFERETPVTLAFNQV 264
Query: 174 EKI 176
KI
Sbjct: 265 TKI 267
>gi|224282356|ref|ZP_03645678.1| NusG antitermination factor [Bifidobacterium bifidum NCIMB 41171]
gi|313139500|ref|ZP_07801693.1| transcription antitermination protein nusG [Bifidobacterium bifidum
NCIMB 41171]
gi|313132010|gb|EFR49627.1| transcription antitermination protein nusG [Bifidobacterium bifidum
NCIMB 41171]
Length = 280
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R+ GL+ + +I +P E V KG+KV + R P
Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRV-P 153
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + +++T V GF+G ++P+P++ E+ ++ +
Sbjct: 154 GYVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDK 213
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 214 PAAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 273
Query: 171 NQVEKI 176
+QVEK+
Sbjct: 274 HQVEKL 279
>gi|116495742|ref|YP_807476.1| transcription antiterminator [Lactobacillus casei ATCC 334]
gi|227533698|ref|ZP_03963747.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239630147|ref|ZP_04673178.1| transcription antiterminator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067297|ref|YP_003789320.1| transcription antiterminator [Lactobacillus casei str. Zhang]
gi|116105892|gb|ABJ71034.1| transcription antitermination protein nusG [Lactobacillus casei
ATCC 334]
gi|227188682|gb|EEI68749.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239527759|gb|EEQ66760.1| transcription antiterminator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439704|gb|ADK19470.1| Transcription antiterminator [Lactobacillus casei str. Zhang]
gi|327383308|gb|AEA54784.1| NusG antitermination factor [Lactobacillus casei LC2W]
gi|327386491|gb|AEA57965.1| NusG antitermination factor [Lactobacillus casei BD-II]
Length = 184
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K ++ R S +D + + +P E + G++ ++ FPG
Sbjct: 11 RWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ ++++ + + + +
Sbjct: 71 YVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMGMSTRH--ND 128
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VGE V + DG F +G V VD+EK ++ V +F R EL ++QV+K+
Sbjct: 129 VEFDVGEPVTIIDGAFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184
>gi|310286801|ref|YP_003938059.1| transcription antitermination factor NusG [Bifidobacterium bifidum
S17]
gi|309250737|gb|ADO52485.1| transcription antitermination factor NusG [Bifidobacterium bifidum
S17]
Length = 280
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 14/186 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
+WY++ YS EK+ ++ R+ GL+ + +I +P E V KG+KV + R P
Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRV-P 153
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVLI+ + +++T V GF+G ++P+P++ E+ ++ +
Sbjct: 154 GYVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDK 213
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL +
Sbjct: 214 PAAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGF 273
Query: 171 NQVEKI 176
+QVEK+
Sbjct: 274 HQVEKL 279
>gi|270651531|ref|ZP_06222258.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae HK1212]
gi|270317121|gb|EFA28748.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae HK1212]
Length = 110
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 71 MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
M D+ +H +K P+V+GF+G T + P+P++ E + I+N++E +P + GE V
Sbjct: 3 MNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRNEYHPGEEV 62
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI
Sbjct: 63 RVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 109
>gi|191639230|ref|YP_001988396.1| Transcription antitermination protein NusG [Lactobacillus casei
BL23]
gi|190713532|emb|CAQ67538.1| Transcription antitermination protein NusG [Lactobacillus casei
BL23]
Length = 184
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K ++ R S +D + + +P E + G++ ++ FPG
Sbjct: 11 RWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ ++++ + + + +
Sbjct: 71 YVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMGMSTRH--ND 128
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VGE V + DG F +G V VD+EK ++ V +F R EL ++QV+K+
Sbjct: 129 VEFDVGEPVTIIDGDFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184
>gi|227497153|ref|ZP_03927401.1| transcription antitermination protein [Actinomyces urogenitalis DSM
15434]
gi|226833410|gb|EEH65793.1| transcription antitermination protein [Actinomyces urogenitalis DSM
15434]
Length = 263
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 32/202 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY++ YS E++ I R L+ V + +P E V+ V+ G+K R PG
Sbjct: 64 WYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKEVSRVRIPG 123
Query: 64 YVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHI----------- 106
YV ++ + +D+V+ TIKDTP V GF+G NP P+T D + +
Sbjct: 124 YVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYNPVPLTFDEAVSQLGPTPEEVAAKQ 183
Query: 107 ------------MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
QV Q V V FEVGE V V+DGPF S + + E ++
Sbjct: 184 AAAANAAPEEGGRTQVVEGGQ--VYEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQ 241
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + +FGR TP EL++ QV KI
Sbjct: 242 VLISLFGRDTPAELSFTQVAKI 263
>gi|69250484|ref|ZP_00605157.1| transcription antitermination protein NusG [Enterococcus faecium
DO]
gi|68193940|gb|EAN08510.1| transcription antitermination protein NusG [Enterococcus faecium
DO]
Length = 166
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 11 YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV 70
Y N K +ES R + + + +P E+ V+ G++ + FPGYVL++ +
Sbjct: 2 YENKVKANIES---RAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTFPGYVLVEMI 58
Query: 71 MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ + + EVGE
Sbjct: 59 MTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQ--NDLEVEVGE 116
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + +G FA G V VD EK ++ V + +FGR T EL ++QV+KI
Sbjct: 117 VVKIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 165
>gi|270291194|ref|ZP_06197417.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici 7_4]
gi|270280590|gb|EFA26425.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici 7_4]
Length = 181
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ R G++ + + +P E + + G++ ++ FPG
Sbjct: 7 KWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEFPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD ++ +++TP V GF+ G+G P+P+ E++ ++ ++ + +
Sbjct: 67 YVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTARH--AD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE V + DG F G + +D ++ V + +FGR T EL +Q++KI
Sbjct: 125 INVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 180
>gi|291521805|emb|CBK80098.1| transcription antitermination protein nusG [Coprococcus catus GD/7]
Length = 187
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P WY+V YS E K +I + L+ + ++ +P + V+ V+ G+K +++ FP
Sbjct: 11 PMWYVVHTYSGYENKVKTNIDKSIQNLHLEDQILDVQVPVQEVIEVKDGKKKTVQKKLFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI---MNQVEAAVQRPVS 119
GYVL+ +M D+ ++ +++T V GF+G P P+T+ E+ + MN E +
Sbjct: 71 GYVLLHMIMNDETWYVVRNTRGVTGFVGPESKPVPLTEEEMAAMGINMNDAEKDEPDQMI 130
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E G+ V + G + GIV++V+ V V + +FGR T VE+++ + K+
Sbjct: 131 LVDIEEGDMVNIVSGAWQDKEGIVQSVNSANGTVTVGLDMFGRETAVEISFLDIRKM 187
>gi|206900373|ref|YP_002251089.1| transcription termination/antitermination factor NusG [Dictyoglomus
thermophilum H-6-12]
gi|206739476|gb|ACI18534.1| transcription termination/antitermination factor NusG [Dictyoglomus
thermophilum H-6-12]
Length = 176
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 2/173 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+W++V + E K + ++ + L+ V EI +P E+V++V+ G+K ++ FP
Sbjct: 4 PKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ V + V I++T V GF+GT PS + E I +E RP V
Sbjct: 64 GYLFIRMVEDEDVIRLIRNTTGVTGFVGTPGRPSTLNPQEEHWIKRFLEQKEIRPELKV- 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+RV + GPF + G V V EK V V + IFGR TP E+ + QVEK
Sbjct: 123 -KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVKVLLSIFGRETPTEIDHTQVEK 174
>gi|306835182|ref|ZP_07468218.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49726]
gi|304568937|gb|EFM44466.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49726]
Length = 298
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG
Sbjct: 103 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 162
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 163 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGDAAPNE 222
Query: 108 NQVEAAVQRPVSSVF------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ E V+ P V FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 223 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 282
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 283 RETPVELSPTEIERI 297
>gi|227502615|ref|ZP_03932664.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49725]
gi|227076655|gb|EEI14618.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49725]
Length = 301
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG
Sbjct: 106 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 165
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 166 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGEAAPNE 225
Query: 108 NQVEAAVQRPVSSVF------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ E V+ P V FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 226 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 285
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 286 RETPVELSPTEIERI 300
>gi|162447021|ref|YP_001620153.1| transcription antitermination protein [Acholeplasma laidlawii
PG-8A]
gi|161985128|gb|ABX80777.1| transcription antitermination protein [Acholeplasma laidlawii
PG-8A]
Length = 182
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY++Q YS EK E + R+ G+ + +I +P E + K G+ R+ +P
Sbjct: 9 RWYVIQTYSGYEKAVKEDLARRVDSMGMQDYIYQIIVPEETYIEKNKDGKDKEKVRQIYP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV ++ ++TD + +++TP+V GFLG+ G P P+ + EI I+ + + +P
Sbjct: 69 GYVFVEMLVTDDSWFVVRNTPRVTGFLGSSGGGTKPVPLLEEEIRPILLKAN-VISKP-- 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + +G+ V + G F G V VD ++ ++ V++ +FGR TP E+ + Q ++I
Sbjct: 126 NYEYLLGKEVQIISGAFEGQIGRVSYVDADQEKMMVDIDVFGRATPTEIDFTQFKEI 182
>gi|304385479|ref|ZP_07367824.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici DSM 20284]
gi|304328686|gb|EFL95907.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici DSM 20284]
Length = 202
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K ++ R G++ + + +P E + + G++ ++ FPG
Sbjct: 28 KWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEFPG 87
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD ++ +++TP V GF+ G+G P+P+ E++ ++ ++ + +
Sbjct: 88 YVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTARH--AD 145
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE V + DG F G + +D ++ V + +FGR T EL +Q++KI
Sbjct: 146 INVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 201
>gi|217967757|ref|YP_002353263.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724]
gi|217336856|gb|ACK42649.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724]
Length = 176
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 2/173 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+W++V + E K + ++ + L+ V EI +P E+V++V+ G+K ++ FP
Sbjct: 4 PKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ + + V I++T V GF+GT PS + E I +E RP V
Sbjct: 64 GYLFIRMIEDEDVIRMIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKV- 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+RV + GPF + G V V EK V V + IFGR TP E+ + QVEK
Sbjct: 123 -KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174
>gi|166154530|ref|YP_001654648.1| transcription antitermination protein NusG [Chlamydia trachomatis
434/Bu]
gi|166155405|ref|YP_001653660.1| transcription antitermination protein NusG [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335790|ref|ZP_07224034.1| transcription antitermination protein NusG [Chlamydia trachomatis
L2tet1]
gi|165930518|emb|CAP04012.1| transcription antitermination protein [Chlamydia trachomatis
434/Bu]
gi|165931393|emb|CAP06966.1| transcription antitermination protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 182
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ EI++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGG-APVALSEEEIKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|68171883|ref|ZP_00545209.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Sapulpa]
gi|67998694|gb|EAM85420.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Sapulpa]
Length = 179
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E+K ++I GL+ E+ IP E + V+ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + I+ P+V+ FL P ++++E+E + ++ +V S
Sbjct: 61 SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+G+ V ++DG F FNG V+ +++++ V V+IFGR+T +E ++K+
Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDEKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|255311121|ref|ZP_05353691.1| transcription antitermination protein NusG [Chlamydia trachomatis
6276]
gi|255317422|ref|ZP_05358668.1| transcription antitermination protein NusG [Chlamydia trachomatis
6276s]
Length = 182
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKHIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGG-APVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|187735541|ref|YP_001877653.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835]
gi|187425593|gb|ACD04872.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835]
Length = 189
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ V S E + I + + L + + +P+E + VR G+K + FPG
Sbjct: 10 QWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKLFPG 69
Query: 64 YV-----LIKA--VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
YV L++A + +++ I+ VI G+ P P+ E+E ++ ++A
Sbjct: 70 YVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSRNAPLPMRKREVEDLLPLLDAEAVA 129
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F VG+ V V +GPF S G ++ +D EK ++ V V IFGR TPV+L Y QVEK
Sbjct: 130 ARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQVEK 188
>gi|94984750|ref|YP_604114.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300]
gi|94555031|gb|ABF44945.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300]
Length = 190
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKGRKVNSERR 59
M+ WY V Y E + + + R + G+ H + ++ P+E V +R+G K + RR
Sbjct: 1 MSIEWYAVHTYVGQEDRVEQHLLERAKKLGMLHTKIFQVLQPTEEAVELREGGKKETVRR 60
Query: 60 -FFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
FPGYV ++ + D + + ++ T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLASV 120
Query: 111 EAAVQ-----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A Q P V + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP
Sbjct: 121 GVAAQPQEEAAPRVKVDLKPGDMVRVTAGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180
Query: 166 VELAYNQVEK 175
VEL + QV K
Sbjct: 181 VELDFAQVSK 190
>gi|297159567|gb|ADI09279.1| transcription antitermination protein nusG [Streptomyces
bingchenggensis BCW-1]
Length = 297
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 110 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRRTVRQNKLPGY 169
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
VL++ +T++ + +++TP V GF+G +P P+T EI ++ EA
Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEEAG 229
Query: 114 VQRP-----VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ P V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 230 LPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 290 SFDQIQK 296
>gi|237736026|ref|ZP_04566507.1| transcription antitermination protein nusG [Fusobacterium
mortiferum ATCC 9817]
gi|229421840|gb|EEO36887.1| transcription antitermination protein nusG [Fusobacterium
mortiferum ATCC 9817]
Length = 200
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 19/194 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +W+++ YS EKK + ++ G+ +VT+I +P E + +G+K R+
Sbjct: 5 LVKKWFMIHTYSGYEKKVKTDLEQKIETLGMGDIVTKILVPEEETIEEVRGKKKTVARKI 64
Query: 61 FPGYVLIKAVMT-------------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
FPGYV+++ V T ++ +++T V GF+G G +P P+ D E+++I
Sbjct: 65 FPGYVMLEMVATREESNEGINFRVDSDAWYVVRNTNGVTGFVGVGSDPIPMEDEEVKNIF 124
Query: 108 NQV------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ E + V + F VG+ V V G FA G V +D E + V + +FG
Sbjct: 125 EVIGLDLTEEEKELKEVIKINFAVGDYVKVLKGGFADQEGKVAEIDMEHKKAKVMIEMFG 184
Query: 162 RVTPVELAYNQVEK 175
R+TPVE+ ++ V+K
Sbjct: 185 RMTPVEVDFDSVQK 198
>gi|116671541|ref|YP_832474.1| NusG antitermination factor [Arthrobacter sp. FB24]
gi|116611650|gb|ABK04374.1| NusG antitermination factor [Arthrobacter sp. FB24]
Length = 287
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 106 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 165
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS- 119
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V +A +PV
Sbjct: 166 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVKH 225
Query: 120 -----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V FEVGE V V +GPF + + + + + V V IF R TPV LA+NQV
Sbjct: 226 AAAPVDVDFEVGESVIVKEGPFETLPATISEIKVDSQTLVVLVSIFERETPVTLAFNQVT 285
Query: 175 KI 176
KI
Sbjct: 286 KI 287
>gi|227505155|ref|ZP_03935204.1| transcription antitermination protein NusG [Corynebacterium
striatum ATCC 6940]
gi|227198268|gb|EEI78316.1| transcription antitermination protein NusG [Corynebacterium
striatum ATCC 6940]
Length = 281
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG
Sbjct: 87 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQILENKDGKKKIVKRKLLPG 146
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++ + D + +++TP V F+G N +PV ++ +
Sbjct: 147 YVLVRMELNDAAWSVVRETPGVTSFVGNEGNATPVKIRDVAKFLMPNEAAPEAKSSAGDQ 206
Query: 108 --NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
QV A ++ + + FEVGE V + GP AS + + +D E ++ V IFGR
Sbjct: 207 DGEQVVAMPEKAAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 266
Query: 163 VTPVELAYNQVEKI 176
TPVEL+ ++E+I
Sbjct: 267 ETPVELSPTEIERI 280
>gi|290954462|ref|ZP_06559083.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica URFT1]
gi|295312067|ref|ZP_06802880.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica URFT1]
Length = 126
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
SER++FPGYVLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I+ VE +
Sbjct: 2 KSERKYFPGYVLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSK 61
Query: 115 Q--RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
P + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++Q
Sbjct: 62 STVEPRLRKSYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQ 121
Query: 173 VEK 175
VEK
Sbjct: 122 VEK 124
>gi|15605041|ref|NP_219825.1| transcription antitermination protein NusG [Chlamydia trachomatis
D/UW-3/CX]
gi|76789042|ref|YP_328128.1| transcription antitermination protein NusG [Chlamydia trachomatis
A/HAR-13]
gi|237804665|ref|YP_002888819.1| transcription antitermination protein NusG [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255348680|ref|ZP_05380687.1| transcription antitermination protein NusG [Chlamydia trachomatis
70]
gi|255503220|ref|ZP_05381610.1| transcription antitermination protein NusG [Chlamydia trachomatis
70s]
gi|255506898|ref|ZP_05382537.1| transcription antitermination protein NusG [Chlamydia trachomatis
D(s)2923]
gi|18202223|sp|O84322|NUSG_CHLTR RecName: Full=Transcription antitermination protein nusG
gi|3328738|gb|AAC67913.1| Transcriptional termination protein [Chlamydia trachomatis
D/UW-3/CX]
gi|76167572|gb|AAX50580.1| NusG [Chlamydia trachomatis A/HAR-13]
gi|231272965|emb|CAX09876.1| transcription antitermination protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|296435836|gb|ADH18010.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/9768]
gi|296436761|gb|ADH18931.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/11222]
gi|296437696|gb|ADH19857.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/11074]
gi|297140195|gb|ADH96953.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/9301]
gi|297748449|gb|ADI50995.1| NusG [Chlamydia trachomatis D-EC]
gi|297749329|gb|ADI52007.1| NusG [Chlamydia trachomatis D-LC]
Length = 182
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGG-APVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|290958181|ref|YP_003489363.1| transcription antitermination protein [Streptomyces scabiei 87.22]
gi|260647707|emb|CBG70812.1| transcription antitermination protein [Streptomyces scabiei 87.22]
Length = 294
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY
Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|289525359|emb|CBJ14835.1| transcription antitermination protein [Chlamydia trachomatis
Sweden2]
gi|296434909|gb|ADH17087.1| transcription antitermination protein NusG [Chlamydia trachomatis
E/150]
gi|296438629|gb|ADH20782.1| transcription antitermination protein NusG [Chlamydia trachomatis
E/11023]
Length = 182
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGG-APVALSEEEVKNILADLEEKKSGIVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|227522460|ref|ZP_03952509.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC
8290]
gi|227090412|gb|EEI25724.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC
8290]
Length = 183
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ R G+ L+ I +P +E +KG+ + FP
Sbjct: 8 KWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRIVVPETEEHEVDKKGKDKVKMDKTFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + +
Sbjct: 68 GYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHEDL 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V VG+ V + DG F G V +D EK R+ V + +FGR T EL +NQV+
Sbjct: 128 DV--NVGDSVKIVDGAFTGLKGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQVD 180
>gi|311739242|ref|ZP_07713079.1| transcription antitermination protein NusG [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305668|gb|EFQ81734.1| transcription antitermination protein NusG [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 306
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+V+ + G+K +R+ PG
Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230
Query: 108 ---NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
QV A ++ + + FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 231 AEGEQVVAMPEKEEAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 291 RETPVELSPTEIERI 305
>gi|42527927|ref|NP_973025.1| transcription antitermination protein NusG [Treponema denticola
ATCC 35405]
gi|41818972|gb|AAS12944.1| transcription antitermination protein NusG [Treponema denticola
ATCC 35405]
gi|325474848|gb|EGC78034.1| transcription antitermination protein NusG [Treponema denticola
F0402]
Length = 185
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ YS E K +I + + + VT+I IP E V+ + G+K N +R+
Sbjct: 1 MAKAWYILHTYSGYENKIERTIRTLIEKGIISADFVTDIKIPEELVIENKGGKKRNVKRK 60
Query: 60 FFPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQV-EA 112
F PGY+L++ + D V I+ V GFLGT E P P++ E + I+ + E
Sbjct: 61 FLPGYMLVEMNLPDLGWKSVCSEIRKIQGVTGFLGTAGNEKPQPISPDEAKEILQKTGEI 120
Query: 113 AVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + + F G+ V + +G FASF G++ V +K+++ V V IFGR TPVE+ +
Sbjct: 121 KGDKNIRVIQNFSEGQHVKIIEGAFASFTGVIDEVMADKNKLRVMVAIFGRTTPVEVEMS 180
Query: 172 QVEKI 176
Q E I
Sbjct: 181 QAEII 185
>gi|259502667|ref|ZP_05745569.1| transcription antitermination protein NusG [Lactobacillus antri DSM
16041]
gi|259169312|gb|EEW53807.1| transcription antitermination protein NusG [Lactobacillus antri DSM
16041]
Length = 150
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
G+ + + + E V V+ G+ FPGYVL++ VMTD+ ++ ++TP V GFL
Sbjct: 2 GMQDYIFRVVVAEETVREVKDGQAKEVTENTFPGYVLVEMVMTDQAWYIARNTPGVTGFL 61
Query: 90 GT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
G+ G P+P+ E+E IM ++ A + VS + + G+ V V GPFA G V V
Sbjct: 62 GSHGGGSKPTPLLPDEVERIMKRMGADIT--VSDIDVKEGDTVKVIAGPFADLTGKVTEV 119
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
D EK ++ V V +FGR T EL ++QV+ +
Sbjct: 120 DHEKQKLKVNVEMFGRETSAELGFDQVDTV 149
>gi|295093315|emb|CBK82406.1| transcription antitermination protein nusG [Coprococcus sp.
ART55/1]
Length = 175
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K I L + E+ +P E ++ G+ + ER+ PG
Sbjct: 8 RWYVVHTYSGYENKVKADIEKTKENRNLQDQILEVVVPVEDATEIKNGKPKSIERKILPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI +M D ++ +++T V GF+G+ P P+TD E+ ++ E V +
Sbjct: 68 YVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTDEELSNLYQTSEEVV------ID 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ + V+ G + +K ++ K V +EV +FGRV V++A+ ++K+
Sbjct: 122 VEVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 175
>gi|199598558|ref|ZP_03211975.1| Transcription antiterminator [Lactobacillus rhamnosus HN001]
gi|229552909|ref|ZP_04441634.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus
LMS2-1]
gi|258509294|ref|YP_003172045.1| transcription antitermination protein NusG [Lactobacillus rhamnosus
GG]
gi|258540480|ref|YP_003174979.1| transcription antitermination protein nusG [Lactobacillus rhamnosus
Lc 705]
gi|199590600|gb|EDY98689.1| Transcription antiterminator [Lactobacillus rhamnosus HN001]
gi|229313717|gb|EEN79690.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus
LMS2-1]
gi|257149221|emb|CAR88194.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus
GG]
gi|257152156|emb|CAR91128.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus
Lc 705]
gi|259650575|dbj|BAI42737.1| transcription antiterminator [Lactobacillus rhamnosus GG]
Length = 184
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K ++ R S +D + + +P E + G++ ++ FPG
Sbjct: 11 RWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ +++ + + +
Sbjct: 71 YVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVASVLHSMGMSTRH--QD 128
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VGE V + DG F +G V VD++K ++ V +F R EL ++QV+K+
Sbjct: 129 VEFDVGEPVTIIDGAFTGMHGKVTAVDKDKMKLKVVTEMFDREVTAELDFDQVDKL 184
>gi|116333236|ref|YP_794763.1| transcription antiterminator [Lactobacillus brevis ATCC 367]
gi|116098583|gb|ABJ63732.1| transcription antitermination protein nusG [Lactobacillus brevis
ATCC 367]
Length = 182
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E K + ++ R G+ + + +P E V+ G+ + + FPG
Sbjct: 8 QWYVLHTYAGYENKVMANLESRAESMGMQDNIFRVVVPEEEEHEVKNGKDKVTMGKTFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VM+D+ ++ +++TP V GFLG+ G P+P+ E+E I+ +V + + +
Sbjct: 68 YVLVEMVMSDQSWYIVRNTPGVTGFLGSHGQGSKPTPLLPDEVERILRRVGISARH--AE 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ G+ V + DG F+ G + VD EK ++ V + +FGR T EL ++QV+ IV
Sbjct: 126 LDVAPGDSVTIVDGAFSGLVGKITEVDNEKMKLKVNIDMFGRETSTELNFDQVDPIV 182
>gi|483834|dbj|BAA04282.1| NusG [Streptomyces coelicolor A3(2)]
Length = 300
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P + VV ++ G + + PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQKEVVQIKNGDRKTIRQNKLPGY 172
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 173 VLVRMDYTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232
Query: 111 EAAVQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A QR V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 293 SFDQIQK 299
>gi|260905750|ref|ZP_05914072.1| transcription termination/antitermination factor [Brevibacterium
linens BL2]
Length = 302
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +++ R L+ + E +P E VV ++ G++ R PGY
Sbjct: 114 WYVIHSYAGYENRVKQNLENRAISLNLEEFIFESQVPMEDVVEIKNGQRKQVRRVRIPGY 173
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G +P+P++ E+ ++ +
Sbjct: 174 VLVRMELTDESWGAVRHTPGVTGFVGNAYDPTPLSIDEVFTMLAPIFEERQAEAAAAEGV 233
Query: 111 ---EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+AA P++ V +EVGE V V +G F ++ + E ++ V + IF R PVE
Sbjct: 234 QAEQAAKSAPITEVEYEVGESVLVKEGSFEGHPATIQEIRPESQKLTVLLSIFERDVPVE 293
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 294 LSFDQVSKL 302
>gi|225376339|ref|ZP_03753560.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM
16841]
gi|225211715|gb|EEG94069.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM
16841]
Length = 178
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+V YS E K +I + L+ + E+ +P + VV ++ G ++ FPG
Sbjct: 11 HWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGANKTVSKKMFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI VM D ++ +++T V GF+G G P P+TD E++ + + E V F
Sbjct: 71 YVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMKPLGIKTENV------EVDF 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V V G + G++++++ K V + V +FGR TPVE+++ ++
Sbjct: 125 AEGDTVTVIGGVWKDTVGVIQSMNHSKQIVTINVELFGRETPVEISFADIK 175
>gi|315605093|ref|ZP_07880145.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315313200|gb|EFU61265.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 264
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K
Sbjct: 76 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGTAKKRVRHV 135
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQ-- 115
PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ N +E A +
Sbjct: 136 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAV 195
Query: 116 ----RPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
PV +V +EVGE V V DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 196 KDQPAPVQAVQTQYEVGEIVTVIDGPFETMSATISEIMPETQKLKVLVTIFERETPLELG 255
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 256 FDQVEKL 262
>gi|227529493|ref|ZP_03959542.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC
49540]
gi|227350578|gb|EEJ40869.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC
49540]
Length = 150
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
G+ + + +P + V V+ G+ + FPGYVL++ VMTD+ ++ ++TP V GFL
Sbjct: 2 GMQDYIFRVVVPEDEVRQVKDGQAKEVVEKTFPGYVLVEMVMTDQAWYIARNTPGVTGFL 61
Query: 90 GT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
G+ G P+P+ E++ IM ++ VQ + VG+ V V GPFA G V V
Sbjct: 62 GSHGGGSKPTPLLPEEVDRIMKRM--GVQTVQHDIDVSVGDSVKVIAGPFADLTGKVTEV 119
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
D EK ++ V V +FGR T EL ++Q++ +
Sbjct: 120 DHEKMKLKVNVEMFGRETSAELGFDQIDTV 149
>gi|15835211|ref|NP_296970.1| transcription antitermination protein NusG [Chlamydia muridarum
Nigg]
gi|270285383|ref|ZP_06194777.1| transcription antitermination protein [Chlamydia muridarum Nigg]
gi|270289396|ref|ZP_06195698.1| transcription antitermination protein [Chlamydia muridarum Weiss]
gi|301336780|ref|ZP_07224982.1| transcription antitermination protein NusG [Chlamydia muridarum
MopnTet14]
gi|18203363|sp|Q9PK75|NUSG_CHLMU RecName: Full=Transcription antitermination protein nusG
gi|7190632|gb|AAF39426.1| transcription antitermination protein NusG [Chlamydia muridarum
Nigg]
Length = 182
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGG-APVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|295425597|ref|ZP_06818284.1| transcription termination/antitermination factor NusG
[Lactobacillus amylolyticus DSM 11664]
gi|295064613|gb|EFG55534.1| transcription termination/antitermination factor NusG
[Lactobacillus amylolyticus DSM 11664]
Length = 162
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R G+ + + +P + V +G+K E + FPG
Sbjct: 8 QWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEKEKVETVRGKKQEVEEKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++NQ + ++ +
Sbjct: 68 YVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLNQ-QGQPEKKKPT 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDE 148
V FE+GE V +++G +FNGIV + +
Sbjct: 127 VNFELGEHVTITEG---AFNGIVGKITD 151
>gi|238922785|ref|YP_002936298.1| transcription antitermination protein NusG [Eubacterium rectale
ATCC 33656]
gi|238874457|gb|ACR74164.1| transcription antitermination protein NusG [Eubacterium rectale
ATCC 33656]
gi|291523705|emb|CBK89292.1| transcription antitermination protein nusG [Eubacterium rectale DSM
17629]
gi|291528833|emb|CBK94419.1| transcription antitermination protein nusG [Eubacterium rectale
M104/1]
Length = 172
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L+ + E+ +P E V V+ G + ++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVTEVKNGVRKQVSKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI +M D ++ +++T V GF+G G P P+T++E+ + + E V V F
Sbjct: 66 VLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPLGIKTENVV------VDFA 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + V G + G++ ++ K V + V +FGR TPVE+++ V+K
Sbjct: 120 EGDMIVVIGGVWKDTVGVITAMNYHKQTVTINVELFGRETPVEVSFADVKK 170
>gi|237743080|ref|ZP_04573561.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1]
gi|260495681|ref|ZP_05815804.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_33]
gi|229433376|gb|EEO43588.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1]
gi|260196746|gb|EEW94270.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_33]
Length = 193
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67
Query: 64 YVLIKAVMTD-------------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T +V++ +++T V GF+G G +P P+ + E+++I N +
Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GVKTPKETIKVDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|306830215|ref|ZP_07463398.1| transcription termination/antitermination factor NusG
[Streptococcus mitis ATCC 6249]
gi|304427582|gb|EFM30679.1| transcription termination/antitermination factor NusG
[Streptococcus mitis ATCC 6249]
Length = 183
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+K E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEIDNNK--VKMMISMFGNDTIAEVNLNQIAEL 183
>gi|323358913|ref|YP_004225309.1| transcription antiterminator [Microbacterium testaceum StLB037]
gi|323275284|dbj|BAJ75429.1| transcription antiterminator [Microbacterium testaceum StLB037]
Length = 376
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E+K +I R S ++ + ++ +P E VV ++ G++ R PG
Sbjct: 186 KWYVIHSYAGFERKVKANIEQRKSTLEVEDDIYQVEVPMEDVVEIKNGQRKMVNRVRIPG 245
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQR--- 116
YVL++ + + + ++ TP V GF+G NP+P+ E +++ + EAA +
Sbjct: 246 YVLVRMDLNEDTWSVVRHTPGVTGFVGNAHNPTPLRFEEAFNMLKSLVEVKEAAPTKAGA 305
Query: 117 ----PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
PV++ V FE GE + + +G FA G + + E ++ V V +F R TPV
Sbjct: 306 AKGAPVATRSLPAEVDFETGETITIKEGSFAGLPGTISEIKPESGKLTVLVSLFERETPV 365
Query: 167 ELAYNQVEKIV 177
EL+++QV K++
Sbjct: 366 ELSFDQVTKML 376
>gi|170782938|ref|YP_001711272.1| transcription antitermination protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157508|emb|CAQ02699.1| transcription antitermination protein [Clavibacter michiganensis
subsp. sepedonicus]
Length = 345
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E++ +I R+ ++ + +I +P E VV ++ G++ R PG
Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAA------ 113
YVL++ + + + ++ TP V GF+G NP+P+ E ++ + E A
Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 276
Query: 114 -----VQRPVSS-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
QR V++ V FE+GE + + +G FA G + + E ++ V V +F R TPVE
Sbjct: 277 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 336
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 337 LSFDQVTKL 345
>gi|148273972|ref|YP_001223533.1| putative transcription antitermination protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831902|emb|CAN02873.1| putative transcription antitermination protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 340
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E++ +I R+ ++ + +I +P E VV ++ G++ R PG
Sbjct: 152 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 211
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAA------ 113
YVL++ + + + ++ TP V GF+G NP+P+ E ++ + E A
Sbjct: 212 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 271
Query: 114 -----VQRPVSS-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
QR V++ V FE+GE + + +G FA G + + E ++ V V +F R TPVE
Sbjct: 272 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 331
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 332 LSFDQVTKL 340
>gi|320333435|ref|YP_004170146.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211]
gi|319754724|gb|ADV66481.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211]
Length = 190
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + +++ R + L + ++ P+E V +++G +K +R
Sbjct: 1 MSIEWYAVHTYVGQEDRVEDNLIKRARAYSMYGLKIFQVLQPTEEAVELKEGGKKETVKR 60
Query: 59 RFFPGYVLIKAVMTDK--------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D+ + ++ TP V GF+GT P P++ E++ ++ V
Sbjct: 61 KMFPGYVFVQMDIEDEHSPGELGESWEVVRGTPGVTGFVGTTTRPVPLSPEEVQRLLASV 120
Query: 111 EAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A + P V F+ G+ V V+ GPFA F+G+V V+ +++V V V IFGR TPV
Sbjct: 121 GVAAKATEVAPRIKVNFKEGDMVRVTSGPFADFSGVVSEVNAAQAKVKVLVSIFGRETPV 180
Query: 167 ELAYNQVEK 175
EL ++QV +
Sbjct: 181 ELDFSQVSR 189
>gi|229827806|ref|ZP_04453875.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC
49176]
gi|229788005|gb|EEP24119.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC
49176]
Length = 176
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN----SERRF 60
WY+V YS E + I + L + E+ +P+E V +R G++ + R+
Sbjct: 6 WYVVHTYSGYENAVKDDIEATIRSRNLQEQIKEVLVPTEEVTIIRSGKESKKGKPTPRKL 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV I M D+ ++ I++T V GF+G G P P++ E++ ++N V ++V+ +
Sbjct: 66 YPGYVFINMEMNDETWYVIRNTRGVTGFVGPGSKPVPLSAEEMDKMLNSVRSSVEADI-- 123
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + G F G V V+ ++ V + + GR TPVE+++ ++KI
Sbjct: 124 ---EVGDWVRIVTGSFQDREGEVIEVNLDERLVTININSMGRDTPVEISFTDIKKI 176
>gi|34762878|ref|ZP_00143861.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887442|gb|EAA24529.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 193
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67
Query: 64 YVLIKAVMTD-------------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T +V++ +++T V GF+G G +P P+ + E+++I N +
Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|256028511|ref|ZP_05442345.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
gi|289766431|ref|ZP_06525809.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
gi|289717986|gb|EFD81998.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
Length = 193
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67
Query: 64 YVLIKAVMTD-------------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T +V++ +++T V GF+G G +P P+ + E+++I N +
Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GVKTPKETIQVDFTEGDYVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|313904451|ref|ZP_07837828.1| NusG antitermination factor [Eubacterium cellulosolvens 6]
gi|313470787|gb|EFR66112.1| NusG antitermination factor [Eubacterium cellulosolvens 6]
Length = 174
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + L+ + E+ +P E VV V+ G K +++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVKKQVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL+ +M ++ +++T V GF+G+ + P P++ +E++ + E + +
Sbjct: 65 YVLVHMIMNKDNWYVVRNTRGVTGFVGSNPQEPVPLSPAEMQPLGVGSEEKM-----VID 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G++V V GP+ G + +++ K V + V +FGR TPVE+ + +V K+
Sbjct: 120 LEIGDQVVVIGGPWKDSEGEITAINQSKQTVTINVEMFGRATPVEIGFAEVRKV 173
>gi|307702534|ref|ZP_07639487.1| transcription termination/antitermination factor NusG
[Streptococcus oralis ATCC 35037]
gi|331265605|ref|YP_004325235.1| transcription antitermination protein NusG [Streptococcus oralis
Uo5]
gi|307623880|gb|EFO02864.1| transcription termination/antitermination factor NusG
[Streptococcus oralis ATCC 35037]
gi|326682277|emb|CBY99894.1| transcription antitermination protein NusG [Streptococcus oralis
Uo5]
Length = 178
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+K E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTIAEVNLNQIAEL 178
>gi|88607731|ref|YP_505588.1| transcription termination/antitermination factor NusG [Anaplasma
phagocytophilum HZ]
gi|88598794|gb|ABD44264.1| transcription termination/antitermination factor NusG [Anaplasma
phagocytophilum HZ]
Length = 186
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+QV S E+K + I R + G+ + E+ IP E V ++ +KV +++ PGY
Sbjct: 10 WYIIQVSSGNEEKISQMILERSMQLGMSDMFREVFIPYEEVTKIKYNKKVQIKKKLSPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSS--V 121
V + + D + ++ PKV FL P + +E+E + +++ V V
Sbjct: 70 VFLYMKLCDDSVNFVRKIPKVSNFLLDDFGVPKVIPLAEMEAMRSRMCQGVASDVGDDIC 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG ++ V+EEK V V+IFGR+T +E ++ ++K+
Sbjct: 130 GFEVGDEVVINDGLFQDFNGKIEYVNEEKKVAGVSVMIFGRLTKIEFKFSSIQKV 184
>gi|225849560|ref|YP_002729725.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643839|gb|ACN98889.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 260
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
E + FPGY+LIKA +TD + +K TP +IGF+ G P P+ + ++ +++Q++ +
Sbjct: 142 ENKIFPGYILIKAKLTDDLIDLVKKTPYLIGFVSAGGVPVPLDEKDVAKVISQIQKGTPK 201
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + F G+ V V +GPF +F G+V V +K ++ + IFGR TPVEL ++QVEKI
Sbjct: 202 -VRKLLFAKGDMVRVIEGPFMNFTGVVDEVFPDKEKLIALITIFGRATPVELEFSQVEKI 260
Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
+WY + SN E KA E+ L + LD+LV E+ +P+E V ++
Sbjct: 22 KWYALYTQSNLEIKAKENFLKNLKLNNLDYLVDEVIVPAEEKVVIK 67
>gi|270293432|ref|ZP_06199640.1| transcription antitermination protein NusG [Streptococcus sp. M143]
gi|293364534|ref|ZP_06611257.1| transcription antitermination protein NusG [Streptococcus oralis
ATCC 35037]
gi|315611917|ref|ZP_07886835.1| transcription termination/antitermination factor NusG
[Streptococcus sanguinis ATCC 49296]
gi|322376154|ref|ZP_08050662.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C300]
gi|270278094|gb|EFA23943.1| transcription antitermination protein NusG [Streptococcus sp. M143]
gi|291316946|gb|EFE57376.1| transcription antitermination protein NusG [Streptococcus oralis
ATCC 35037]
gi|315315906|gb|EFU63940.1| transcription termination/antitermination factor NusG
[Streptococcus sanguinis ATCC 49296]
gi|321278836|gb|EFX55881.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C300]
Length = 183
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+K E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTIAEVNLNQIAEL 183
>gi|254302296|ref|ZP_04969654.1| transcription antitermination protein NusG [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148322488|gb|EDK87738.1| transcription antitermination protein NusG [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 193
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67
Query: 64 YVLIKAVMTD-------------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T +V++ +++T V GF+G G +P P+ + E+++I N +
Sbjct: 68 YVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|237740928|ref|ZP_04571409.1| transcription antitermination protein nusG [Fusobacterium sp.
4_1_13]
gi|256846757|ref|ZP_05552213.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_36A2]
gi|294784292|ref|ZP_06749586.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_27]
gi|229430972|gb|EEO41184.1| transcription antitermination protein nusG [Fusobacterium sp.
4_1_13]
gi|256717977|gb|EEU31534.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_36A2]
gi|294488048|gb|EFG35400.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_27]
Length = 193
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67
Query: 64 YVLIKAVMTD-------------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T +V++ +++T V GF+G G +P P+ + E+++I N +
Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|306826325|ref|ZP_07459658.1| transcription termination/antitermination factor NusG
[Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304431438|gb|EFM34421.1| transcription termination/antitermination factor NusG
[Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 183
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+K E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTIAEVNLNQIAEL 183
>gi|116493232|ref|YP_804967.1| transcription antitermination protein nusG [Pediococcus pentosaceus
ATCC 25745]
gi|116103382|gb|ABJ68525.1| transcription antitermination protein nusG [Pediococcus pentosaceus
ATCC 25745]
Length = 181
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ R G+ + + +P E V + G ++ FPGY
Sbjct: 8 WYVLHTYSGYENKVKNNLDSRAKSMGMAEYIFRVVVPEEEEVETKNGEDKIVKKNEFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD ++ +++TP V GF+ G+G P+P+ E+E I+ ++ + + +
Sbjct: 68 VLVEMIMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPDEVERILRRLGMTARH--ADI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V + DG F G + VD +V V + +FGR T EL Q++KI
Sbjct: 126 EVEVGELVKIVDGAFEGLTGKITEVDNNNMKVKVNIDMFGRETSTELDIEQIDKI 180
>gi|296111502|ref|YP_003621884.1| transcription antitermination protein NusG [Leuconostoc kimchii
IMSNU 11154]
gi|295833034|gb|ADG40915.1| transcription antitermination protein NusG [Leuconostoc kimchii
IMSNU 11154]
Length = 217
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E K ++ R + + I +P + V +++ G S FPGY
Sbjct: 35 WFVVHTYSGYEHKVKANLESRTQTMRMTEQIFRILVPEQEVTTIQDGEAKTSVENDFPGY 94
Query: 65 VLIKAV------MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ 115
VL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ +
Sbjct: 95 VLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRMGMST- 153
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R V ++ E G+ V + GPF+ G V VD EK + V +FGR TP EL + V+
Sbjct: 154 REVVTLDVEAGQIVKIIAGPFSGMEGTVTAVDPEKQTLEATVEVFGRETPTELDFADVDT 213
Query: 176 IV 177
++
Sbjct: 214 VL 215
>gi|50954135|ref|YP_061423.1| transcription antitermination factor [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50950617|gb|AAT88318.1| transcription antitermination factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 315
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E++ +I R+ ++ + E+ +P E VV ++ G++ R PG
Sbjct: 128 KWYVIHSYAGFERRVKSNIENRMVSMNMEDYIYEVQVPMEDVVEIKNGQRKMVNRVRIPG 187
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----- 118
YVL++ + + + ++ TP V GF+G NP+P+ E + +++ VQ
Sbjct: 188 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPTPL---RFEEAFSMLKSLVQVDAAPAKG 244
Query: 119 -------------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+ V FE+GE + + +G FA G + + E ++ V V +F R TP
Sbjct: 245 AAKGQKAAARVIPAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETP 304
Query: 166 VELAYNQVEKI 176
VEL+++QV K+
Sbjct: 305 VELSFDQVTKL 315
>gi|19705332|ref|NP_602827.1| transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296329159|ref|ZP_06871661.1| transcription termination/antitermination factor NusG
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
gi|19713309|gb|AAL94126.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296153733|gb|EFG94549.1| transcription termination/antitermination factor NusG
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
Length = 193
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67
Query: 64 YVLIKAVMTD-------------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T +V++ +++T V GF+G G +P P+ + E+++I N +
Sbjct: 68 YVMLEMEATREENENGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GVKTPKENVKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|253579423|ref|ZP_04856693.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849521|gb|EES77481.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 171
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K I + L+ + E+ +P + V ++ G +++ FPG
Sbjct: 5 KWYVVHTYSGYENKVKVDIEKTIENRHLEDQILEVRVPLQEVAELKNGALKQVQKKMFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +++ V F
Sbjct: 65 YVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKKEEIQVDF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V+ G + G++ ++ +K + V +FGR TPVE+++ +++++
Sbjct: 119 AEGDTVVVTGGAWKDTVGVITALNVQKQTATINVELFGRETPVEISFAEIKQM 171
>gi|225026865|ref|ZP_03716057.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353]
gi|224955872|gb|EEG37081.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353]
Length = 174
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L + E+ +P + VV ++ G K N ++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIEKTIENRKLQDQIFEVRVPLQDVVEMKGGVKKNVSKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH--IMNQVEAAVQRPVSSVF 122
VL+ VM D ++ +++T V GF+G G +P P++++E+ + I+ Q + V+ +
Sbjct: 66 VLVNMVMNDDTWYVVRNTRGVTGFVGPGSDPVPLSEAEMRNLGIVAQSDNEVE-----ID 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V V+ G + V ++ K V +EV +FGR T VE+ + V+K+
Sbjct: 121 IEIGDLVEVTSGAWEGRVSTVTAINMNKQTVTIEVDMFGRETSVEIGFLDVKKL 174
>gi|307705692|ref|ZP_07642538.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK597]
gi|307707716|ref|ZP_07644195.1| transcription termination/antitermination factor NusG
[Streptococcus mitis NCTC 12261]
gi|307710897|ref|ZP_07647323.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK321]
gi|307616214|gb|EFN95408.1| transcription termination/antitermination factor NusG
[Streptococcus mitis NCTC 12261]
gi|307617253|gb|EFN96427.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK321]
gi|307620706|gb|EFN99796.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK597]
Length = 178
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 178
>gi|157704379|gb|ABV68878.1| NusG [Candidatus Liberibacter asiaticus]
Length = 49
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 1 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 49
>gi|197294704|ref|YP_001799245.1| Transcription antitermination protein [Candidatus Phytoplasma
australiense]
gi|171854031|emb|CAM12004.1| Transcription antitermination protein [Candidatus Phytoplasma
australiense]
Length = 204
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
RWYI Q Y E + + R+ G+ L++ + P E R G+K + ER +P
Sbjct: 30 RWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSKERNLYP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD + +K+TP++ GFLG+ P P+++ EI ++ ++ + +P
Sbjct: 90 GYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKM-GIMSKPNY 148
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G++V + G A+ V +D ++ ++ VEV +FGR PVE++++ ++I
Sbjct: 149 DHL--IGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDFKEI 203
>gi|322378273|ref|ZP_08052755.1| transcription termination/antitermination factor NusG
[Streptococcus sp. M334]
gi|321280775|gb|EFX57793.1| transcription termination/antitermination factor NusG
[Streptococcus sp. M334]
Length = 183
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDLDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 133 --EVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 183
>gi|88856010|ref|ZP_01130672.1| transcription antitermination factor [marine actinobacterium
PHSC20C1]
gi|88814877|gb|EAR24737.1| transcription antitermination factor [marine actinobacterium
PHSC20C1]
Length = 315
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ EK+ +I R ++ V ++ +P E VV ++ G++ R PG
Sbjct: 127 KWYVIHSYAGFEKRVKHNIENRKVSMAMEDYVFQVEVPMEDVVEIKNGQRKLVNRVRIPG 186
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----- 118
YVL++ + + + ++ TP V GF+G NP P+ E +++ + V+ P
Sbjct: 187 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPVPLRFEEAFNMLKSLVEIVEAPATKGSS 246
Query: 119 -----------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ + FE+GE + + +G FA G + + E ++ V V +F R TPVE
Sbjct: 247 AKGKTAARSIPAEIDFEIGETITIKEGSFAGLPGSISEIKAESGKLIVLVSLFERETPVE 306
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 307 LSFDQVTKL 315
>gi|330718911|ref|ZP_08313511.1| transcription antitermination protein nusG [Leuconostoc fallax KCTC
3537]
Length = 188
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 10/181 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E K ++ R G+ + I +P + V +++ G + FPGY
Sbjct: 9 WFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIKDGEAKQTIENDFPGY 68
Query: 65 VLIKAV------MTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ 115
VL++ MTD+ ++ +++TP V GFLG+ G P+ + E+E ++ ++ V
Sbjct: 69 VLVEMATPQEGNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVELLLRRM-GMVT 127
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R + E+G+ V + GPF+ GIV ++D EK + V +FGR TP EL++ ++
Sbjct: 128 RETVDLDVEIGDAVKIIAGPFSGMEGIVTSIDPEKQAIEATVEVFGRETPTELSFTDIDT 187
Query: 176 I 176
+
Sbjct: 188 L 188
>gi|269219033|ref|ZP_06162887.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 848 str. F0332]
gi|269212144|gb|EEZ78484.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 848 str. F0332]
Length = 274
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS EK+ + + R+ ++ + +I +P E V +R+G++ R PG
Sbjct: 88 RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------- 110
YVLI+ +TD + ++ T V GF+G G P ++++E+ ++ V
Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAG 207
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+AA P + + VG+ V ++ P+A V VD R+ V + + G+ TPVEL++
Sbjct: 208 KAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELSF 267
Query: 171 NQVEK 175
NQV K
Sbjct: 268 NQVRK 272
>gi|326792626|ref|YP_004310447.1| NusG antitermination factor [Clostridium lentocellum DSM 5427]
gi|326543390|gb|ADZ85249.1| NusG antitermination factor [Clostridium lentocellum DSM 5427]
Length = 172
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V +S E K +I + ++ L+ + +P ++ V + G K +R+ FPG
Sbjct: 5 RWYVVHTFSGYENKVKANIEKAIKNRNMEELIHAVEVPLQQEVEEKNGVKKTVQRKTFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VMTD ++ +++T V GF+G P ++ E++++ ++ P V
Sbjct: 65 YVLVKMVMTDDTWYVVRNTRGVTGFVGPDSKPVSLSLEEVKNMGIELYG----PAPKV-- 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
++G+ V + G F + GIVK + + K + V V FGR PVE++ NQVE
Sbjct: 119 KIGDAVTLLTGAFENSEGIVKEIHQSKGTIVVSVSGFGREFPVEISMNQVE 169
>gi|227549794|ref|ZP_03979843.1| transcription antitermination protein NusG [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078049|gb|EEI16012.1| transcription antitermination protein NusG [Corynebacterium
lipophiloflavum DSM 44291]
Length = 311
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R+ ++ + ++ +P E+ + ++ G++ R+ PG
Sbjct: 114 QWYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQAIELKDGKRKIVNRKLLPG 173
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++ M D + +++TP V F+G N +PV ++ +
Sbjct: 174 YVLVRMDMNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKEPTVVGDASQKSA 233
Query: 108 --NQVEAAVQRPVSSVF------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ E + P V +EVGE V + G A+ + + +D E ++ V I
Sbjct: 234 VNAEGETVIAMPEQEVAPKLAHDYEVGEAVTILTGALATVSATISEIDPESGKIQALVSI 293
Query: 160 FGRVTPVELAYNQVEKIV 177
FGR TPVEL +Q+E+I+
Sbjct: 294 FGRETPVELTADQIERIM 311
>gi|289167124|ref|YP_003445391.1| transcription antitermination factor [Streptococcus mitis B6]
gi|288906689|emb|CBJ21523.1| transcription antitermination factor [Streptococcus mitis B6]
Length = 178
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYDMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 128 --EVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 178
>gi|163815635|ref|ZP_02207008.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759]
gi|158449272|gb|EDP26267.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759]
Length = 179
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K I L + E+ +P E ++ G+ + ER+ PG
Sbjct: 12 RWYVVHTYSGYENKVKADIEKTKENRNLQDQIIEVVVPVEDATEIKNGKPKSIERKILPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI +M D ++ +++T V GF+G+ P P+T+ E+ ++ + V +
Sbjct: 72 YVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTEEELSNLYQTSDEVV------ID 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ + V+ G + +K ++ K V +EV +FGRV V++A+ ++K+
Sbjct: 126 VEVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 179
>gi|163839736|ref|YP_001624141.1| transcription termination/antitermination factor [Renibacterium
salmoninarum ATCC 33209]
gi|162953212|gb|ABY22727.1| transcription termination/antitermination factor [Renibacterium
salmoninarum ATCC 33209]
Length = 264
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + EI +P E VV ++ ++ R PGY
Sbjct: 80 WYVIHSYAGYENRVKANLETRAQSLNMEEHIFEIQVPMEEVVEIKNAQRKVVNRVRIPGY 139
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V
Sbjct: 140 VLVRMELTDASWGVVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEDEQAAESGKGSA 199
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A Q P+ +V FE+GE V V +GPF + + + E + V V +F R TPV L++
Sbjct: 200 TKAAQAPI-AVDFEIGESVIVKEGPFETLPATISEIKPESQTLVVLVSLFERETPVTLSF 258
Query: 171 NQVEKI 176
+QV KI
Sbjct: 259 SQVTKI 264
>gi|291166888|gb|EFE28934.1| transcription termination/antitermination factor NusG [Filifactor
alocis ATCC 35896]
Length = 181
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + ++ ++ +++P E +V + G+K R+ FPG
Sbjct: 8 KWYVVHTYSGHENKVKATIEKAVQNRNMEDIIPRVSVPVEEIVEEKNGKKHTRYRKIFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y L+K ++TD+ ++ +++T V GF+G P P+T+ E+ ++ + E V + + F
Sbjct: 68 YCLVKMIVTDESWYVVRNTKGVTGFVGPNSKPIPLTEQEVINMGLEEEVPV---IYKIDF 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG-RVTPVELAYNQVEK 175
G+RV + G F+ V ++ EK ++V +FG R T V++ +Q+EK
Sbjct: 125 AEGDRVIIKGGAFSGLRATVVSLHPEKGMAKIKVYMFGDRETLVDIEVSQLEK 177
>gi|167748127|ref|ZP_02420254.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662]
gi|317472342|ref|ZP_07931669.1| transcription termination/antitermination factor NusG [Anaerostipes
sp. 3_2_56FAA]
gi|167652119|gb|EDR96248.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662]
gi|316900184|gb|EFV22171.1| transcription termination/antitermination factor NusG [Anaerostipes
sp. 3_2_56FAA]
Length = 182
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L + E+ +P + V ++ G K ++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIEKTIENRKLQDQILEVRVPLQDVTELKNGVKKQVSKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVSS 120
VLI VM D ++ +++T V GF+G G P P+T +E++ + V E ++
Sbjct: 66 VLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGISVGGTNEETPKKEKID 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG+ + V+ G + V V+E K V +EV +FGR T VE+ + ++K
Sbjct: 126 IDVEVGDIIVVTSGAWEGTTSAVTVVNEHKQTVTIEVEMFGRATSVEIDFLDIKK 180
>gi|322392790|ref|ZP_08066248.1| transcription antitermination protein NusG [Streptococcus peroris
ATCC 700780]
gi|321144368|gb|EFX39771.1| transcription antitermination protein NusG [Streptococcus peroris
ATCC 700780]
Length = 178
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG F + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 NVEVGQTVRIIDGAFTDYTGKITEIDNNK--VKMTISMFGNDTVAEVNLNQIAEL 178
>gi|15903862|ref|NP_359412.1| transcription antitermination protein NusG [Streptococcus
pneumoniae R6]
gi|111657098|ref|ZP_01407887.1| hypothetical protein SpneT_02001671 [Streptococcus pneumoniae
TIGR4]
gi|148985943|ref|ZP_01818996.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP3-BS71]
gi|148992157|ref|ZP_01821931.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP9-BS68]
gi|148998770|ref|ZP_01826207.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP11-BS70]
gi|149007846|ref|ZP_01831442.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP18-BS74]
gi|149011858|ref|ZP_01833006.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP19-BS75]
gi|149020768|ref|ZP_01835297.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP23-BS72]
gi|168492586|ref|ZP_02716729.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC0288-04]
gi|237650119|ref|ZP_04524371.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CCRI 1974]
gi|298254841|ref|ZP_06978427.1| transcription antitermination protein NusG [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298501505|ref|YP_003723445.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TCH8431/19A]
gi|303260785|ref|ZP_07346741.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP-BS293]
gi|303263114|ref|ZP_07349043.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS292]
gi|303265162|ref|ZP_07351074.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS397]
gi|303267720|ref|ZP_07353538.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS457]
gi|303270091|ref|ZP_07355800.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS458]
gi|15459507|gb|AAL00623.1| Transcription antitermination factor [Streptococcus pneumoniae R6]
gi|147755331|gb|EDK62381.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP11-BS70]
gi|147760696|gb|EDK67669.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP18-BS74]
gi|147763813|gb|EDK70746.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP19-BS75]
gi|147921916|gb|EDK73041.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP3-BS71]
gi|147929206|gb|EDK80217.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP9-BS68]
gi|147930409|gb|EDK81392.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP23-BS72]
gi|183573260|gb|EDT93788.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC0288-04]
gi|298237100|gb|ADI68231.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TCH8431/19A]
gi|302635736|gb|EFL66242.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS292]
gi|302638067|gb|EFL68546.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP-BS293]
gi|302640373|gb|EFL70811.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS458]
gi|302642750|gb|EFL73079.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS457]
gi|302645243|gb|EFL75478.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS397]
Length = 183
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 133 --EIGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 183
>gi|15901830|ref|NP_346434.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TIGR4]
gi|116515696|ref|YP_817227.1| transcription antitermination protein NusG [Streptococcus
pneumoniae D39]
gi|168487640|ref|ZP_02712148.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1087-00]
gi|169834180|ref|YP_001695362.1| transcription antitermination protein NusG [Streptococcus
pneumoniae Hungary19A-6]
gi|172079577|ref|ZP_02709033.2| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1873-00]
gi|183603315|ref|ZP_02714099.2| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae SP195]
gi|183603677|ref|ZP_02718816.2| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC3059-06]
gi|194398075|ref|YP_002038590.1| transcription antitermination protein NusG [Streptococcus
pneumoniae G54]
gi|221232730|ref|YP_002511884.1| transcription antitermination factor [Streptococcus pneumoniae ATCC
700669]
gi|225855498|ref|YP_002737010.1| transcription antitermination protein NusG [Streptococcus
pneumoniae JJA]
gi|225857582|ref|YP_002739093.1| transcription antitermination protein NusG [Streptococcus
pneumoniae P1031]
gi|225859764|ref|YP_002741274.1| transcription antitermination protein NusG [Streptococcus
pneumoniae 70585]
gi|225861827|ref|YP_002743336.1| transcription antitermination protein NusG [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229090|ref|ZP_06962771.1| transcription antitermination protein NusG [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|307068619|ref|YP_003877585.1| transcription antiterminator [Streptococcus pneumoniae AP200]
gi|307128208|ref|YP_003880239.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae 670-6B]
gi|14973517|gb|AAK76074.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TIGR4]
gi|116076272|gb|ABJ53992.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae D39]
gi|168996682|gb|ACA37294.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae Hungary19A-6]
gi|172042609|gb|EDT50655.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1873-00]
gi|183569582|gb|EDT90110.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1087-00]
gi|183571666|gb|EDT92194.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae SP195]
gi|183575431|gb|EDT95959.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC3059-06]
gi|194357742|gb|ACF56190.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae G54]
gi|220675192|emb|CAR69778.1| transcription antitermination factor [Streptococcus pneumoniae ATCC
700669]
gi|225720344|gb|ACO16198.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae 70585]
gi|225723234|gb|ACO19087.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae JJA]
gi|225724365|gb|ACO20217.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae P1031]
gi|225727169|gb|ACO23020.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae Taiwan19F-14]
gi|301794946|emb|CBW37409.1| transcription antitermination factor [Streptococcus pneumoniae
INV104]
gi|301800768|emb|CBW33418.1| transcription antitermination factor [Streptococcus pneumoniae
OXC141]
gi|301802685|emb|CBW35452.1| transcription antitermination factor [Streptococcus pneumoniae
INV200]
gi|306410156|gb|ADM85583.1| Transcription antiterminator [Streptococcus pneumoniae AP200]
gi|306485270|gb|ADM92139.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae 670-6B]
gi|327389002|gb|EGE87349.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA04375]
gi|332071720|gb|EGI82212.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA17545]
gi|332071800|gb|EGI82290.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA17570]
gi|332071866|gb|EGI82355.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA41301]
Length = 178
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 128 --EIGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 178
>gi|261367232|ref|ZP_05980115.1| transcription termination/antitermination factor NusG
[Subdoligranulum variabile DSM 15176]
gi|282570832|gb|EFB76367.1| transcription termination/antitermination factor NusG
[Subdoligranulum variabile DSM 15176]
Length = 179
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV---RKGRKVNS---ER 58
WY+V YS E K + + + L L+ ++ +P+E V+ + G K +R
Sbjct: 7 WYVVHTYSGYENKVAQDLMTMVENRRLQDLICDVKVPTETVIEEVLDKTGNKTGEKEVQR 66
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+ +PGYV +K VM D ++ +++T GF+G P P+T++E+ + + A +Q
Sbjct: 67 KLYPGYVFVKMVMNDNTWYIVRNTRGCTGFVGPESKPEPLTEAEVAKMGVETTAELQ--- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V ++VG+ V ++ GP G V+ +D +V V++ +FGR P EL +QV+
Sbjct: 124 --VDYKVGDTVEITAGPMEGSVGTVEEIDIPARKVRVKITMFGRELPAELELHQVK 177
>gi|294781917|ref|ZP_06747249.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 1_1_41FAA]
gi|294481728|gb|EFG29497.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 1_1_41FAA]
Length = 193
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ L +VT I +P E + + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKIGTLQLRDVVTNILVPEEESIEIVRGKPKKIYRKLFPA 67
Query: 64 YVLIKAVMTDK-------------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T + V++ I++T V GF+G G +P P+ D E+++I N +
Sbjct: 68 YVMLEIEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|322388919|ref|ZP_08062511.1| transcription antitermination protein NusG [Streptococcus infantis
ATCC 700779]
gi|321140302|gb|EFX35815.1| transcription antitermination protein NusG [Streptococcus infantis
ATCC 700779]
Length = 178
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+K E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQE--FDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + +G FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 NVEVGQTVRIIEGAFADYTGKITEIDNNK--VKMVISMFGNDTVAEVNLNQIAEL 178
>gi|262067338|ref|ZP_06026950.1| transcription termination/antitermination factor NusG
[Fusobacterium periodonticum ATCC 33693]
gi|291378901|gb|EFE86419.1| transcription termination/antitermination factor NusG
[Fusobacterium periodonticum ATCC 33693]
Length = 193
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ L +VT I +P E + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFPA 67
Query: 64 YVLIKAVMTDK-------------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T + V++ I++T V GF+G G +P P+ D E+++I N +
Sbjct: 68 YVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|237821865|ref|ZP_04597710.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CCRI 1974M2]
gi|303255490|ref|ZP_07341550.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS455]
gi|302597550|gb|EFL64636.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS455]
Length = 182
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
E+G+ V + DG FA + G + +D K V + + +FG T E+ NQ+
Sbjct: 133 --EIGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQI 180
>gi|148989702|ref|ZP_01821011.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP6-BS73]
gi|147924818|gb|EDK75901.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP6-BS73]
Length = 183
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
E+G+ V + DG FA + G + +D K V + + +FG T E+ NQ+
Sbjct: 133 --EIGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQI 180
>gi|229821642|ref|YP_002883168.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333]
gi|229567555|gb|ACQ81406.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333]
Length = 259
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ EK+ ++ R ++ + ++ +P E VV ++ ++ R PGY
Sbjct: 78 WYVVHSYAGYEKRVKANLESRTQSLNMEEYIFQVEVPEEDVVEIKNAQRKVVRRVRIPGY 137
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSS--- 120
VL++ +TD+ + ++ TP V GF+G P P+T SE+ ++ +EA
Sbjct: 138 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTTSEVVSMLAPTLEAKAPATKPGAAP 197
Query: 121 ------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V F VGE V V+DGPF + + + E ++ V V IFGR TPVEL++NQV
Sbjct: 198 AAAPIEVEFTVGESVTVTDGPFDTLPATISEIAPESQKLKVLVSIFGRETPVELSFNQVA 257
Query: 175 KI 176
KI
Sbjct: 258 KI 259
>gi|237738810|ref|ZP_04569291.1| transcription antitermination protein nusG [Fusobacterium sp.
2_1_31]
gi|229423913|gb|EEO38960.1| transcription antitermination protein nusG [Fusobacterium sp.
2_1_31]
Length = 193
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ YS EKK + ++ L +VT I +P E + +G+ R+ FP
Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFPA 67
Query: 64 YVLIKAVMTDK-------------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+++ T + V++ I++T V GF+G G +P P+ D E+++I N +
Sbjct: 68 YVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187
Query: 171 NQVEKI 176
+ V K+
Sbjct: 188 DGVLKV 193
>gi|261415675|ref|YP_003249358.1| NusG antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372131|gb|ACX74876.1| NusG antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326618|gb|ADL25819.1| transcription termination/antitermination factor NusG [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 179
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V ++ E + + + R G+ I +P+ VVS +G++ S +
Sbjct: 1 MSMQWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIM-----NQVEA 112
FP Y++I+ + + H + V F G P P+ SE++ ++ N +E
Sbjct: 61 FPAYIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+Q P + +GE VC+ +GPF F G+V + E K +V V V FGR TPVELA+NQ
Sbjct: 121 EIQIP-----YTIGENVCIKEGPFKGFVGVVDEIMEAKIKVMVSV--FGRSTPVELAFNQ 173
Query: 173 VE 174
VE
Sbjct: 174 VE 175
>gi|256545060|ref|ZP_05472427.1| transcription antitermination protein NusG [Anaerococcus vaginalis
ATCC 51170]
gi|256399263|gb|EEU12873.1| transcription antitermination protein NusG [Anaerococcus vaginalis
ATCC 51170]
Length = 197
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY+V Y+ E + + I + ++ ++T+P E V V+ K R+ FP
Sbjct: 29 PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K +T++ ++ I++T V GF+G P P+T E+ + +PV ++
Sbjct: 88 GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVR----KFGIKEDKPVLNIN 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ + + GPF VK VD +K + + +FGR T ++L++ +E I
Sbjct: 144 INVGDNINIIQGPFKDLVAEVKEVDTDKQIIKALIDMFGRDTIIDLSFEDIETI 197
>gi|15639228|ref|NP_218676.1| transcription antitermination protein (nusG) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025469|ref|YP_001933241.1| transcription antitermination protein [Treponema pallidum subsp.
pallidum SS14]
gi|6093601|sp|O83264|NUSG_TREPA RecName: Full=Transcription antitermination protein nusG
gi|3322506|gb|AAC65224.1| transcription antitermination protein (nusG) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018044|gb|ACD70662.1| transcription antitermination protein [Treponema pallidum subsp.
pallidum SS14]
gi|291059639|gb|ADD72374.1| transcription termination/antitermination factor NusG [Treponema
pallidum subsp. pallidum str. Chicago]
Length = 185
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ +S E + ++ + + + +++ +I IP E + V+ G+K R+
Sbjct: 1 MAKEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRK 60
Query: 60 FFPGYVLIKAVMTDK----VYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQV-EA 112
FFPGY+L++ + + V + ++ P V GFLG+ N P V+ E I+ + E
Sbjct: 61 FFPGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEI 120
Query: 113 AVQR-PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
R P + F VG++V + +GPFA+F+G V+ V E+++V V V IFGR TPVEL
Sbjct: 121 KGDRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELV 180
Query: 172 QVEKI 176
QVE +
Sbjct: 181 QVEAL 185
>gi|212696286|ref|ZP_03304414.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM
7454]
gi|325846531|ref|ZP_08169446.1| transcription termination/antitermination factor NusG [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|212676915|gb|EEB36522.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM
7454]
gi|325481289|gb|EGC84330.1| transcription termination/antitermination factor NusG [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 197
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY+V Y+ E + + I + ++ ++T+P E V V+ K R+ FP
Sbjct: 29 PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K +T++ ++ I++T V GF+G P P+T E+ + +PV ++
Sbjct: 88 GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVR----KFGIKEDKPVLNID 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + GPF +K +D EK + + +FGR T ++L + +E I
Sbjct: 144 INVGDNVNIIQGPFKDLVAEIKEIDPEKQIIKALIDMFGRDTIIDLGFEDIETI 197
>gi|218960795|ref|YP_001740570.1| transcription antitermination protein NusG [Candidatus Cloacamonas
acidaminovorans]
gi|167729452|emb|CAO80363.1| transcription antitermination protein NusG [Candidatus Cloacamonas
acidaminovorans]
Length = 177
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K +I L+ + L+ V + +P + +R+G+K+ +++ F
Sbjct: 2 KWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFTS 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
YV+++A MT ++ I V FLG + P P++ E++ ++ + R +
Sbjct: 62 YVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDP--NRDIKV 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V GPF F GIV+ E +++ +EV +FGR TPVEL +QVE I
Sbjct: 120 YSYMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVELI 175
>gi|169824235|ref|YP_001691846.1| transcription antiterminator [Finegoldia magna ATCC 29328]
gi|302380892|ref|ZP_07269354.1| transcription termination/antitermination factor NusG [Finegoldia
magna ACS-171-V-Col3]
gi|303234923|ref|ZP_07321548.1| transcription termination/antitermination factor NusG [Finegoldia
magna BVS033A4]
gi|167831040|dbj|BAG07956.1| transcription antiterminator [Finegoldia magna ATCC 29328]
gi|302311270|gb|EFK93289.1| transcription termination/antitermination factor NusG [Finegoldia
magna ACS-171-V-Col3]
gi|302494041|gb|EFL53822.1| transcription termination/antitermination factor NusG [Finegoldia
magna BVS033A4]
Length = 193
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + G + E+ +P+E VS G K ER+ FPG
Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K +TD ++ +++T V GF+G P V++ EI+ + ++ ++ +
Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKEID---V 140
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + G F+ GI++ ++ EK+ V + +FGR T VE++++ +EKI
Sbjct: 141 NVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193
>gi|296500930|ref|YP_003662630.1| transcription antitermination protein NusG [Bacillus thuringiensis
BMB171]
gi|296321982|gb|ADH04910.1| transcription antitermination protein NusG [Bacillus thuringiensis
BMB171]
Length = 149
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 48 VRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIE 104
++ G++ +R+ FPGYVL++ +MTD ++ +++TP V GF+G+ PSP+ + E+
Sbjct: 20 MKNGKEKLMKRKVFPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVV 79
Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
IM + + V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR T
Sbjct: 80 TIMKHM--GMDNEVVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRET 137
Query: 165 PVELAYNQVEKI 176
PVEL ++Q+EK+
Sbjct: 138 PVELDFHQIEKL 149
>gi|319946091|ref|ZP_08020339.1| transcription antitermination protein NusG [Streptococcus australis
ATCC 700641]
gi|319747737|gb|EFV99982.1| transcription antitermination protein NusG [Streptococcus australis
ATCC 700641]
Length = 178
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQIEKNGKTKEIEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI +I+ + VQ ++
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRNILISMGQTVQD--FNI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 DVKVGDTVRIIDGAFADYTGKITEIDNNK--VKMIITMFGNDTVAEVNLNQIAEL 178
>gi|222099194|ref|YP_002533762.1| Transcription antitermination protein nusG [Thermotoga neapolitana
DSM 4359]
gi|221571584|gb|ACM22396.1| Transcription antitermination protein nusG [Thermotoga neapolitana
DSM 4359]
Length = 353
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 9/141 (6%)
Query: 41 PSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD 100
P+ + + + K +K R+ FPGYV I+ +M D+ Y+ ++ P V+GF+ +G P PV D
Sbjct: 216 PTRKEIRIYKTKK----RKLFPGYVFIEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKD 271
Query: 101 SEIEHIMN----QVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
EI I+ + ++PV + F+VG+ V + GPF F G++K +D E+ + V
Sbjct: 272 KEIRPILRLAGLEEYEEKKKPVKVEMGFKVGDTVKIISGPFEDFAGVIKEIDPERQELKV 331
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
V IFGR TPV L ++VEKI
Sbjct: 332 NVTIFGRETPVVLHVSEVEKI 352
Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M WYI+ S E+K E+I ++ +G+ +LV I IP E V+
Sbjct: 1 MKKNWYIIVTMSGYEEKVKENIERKIEATGIRNLVGRIVIPEEVVLD 47
>gi|182684943|ref|YP_001836690.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CGSP14]
gi|182630277|gb|ACB91225.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CGSP14]
Length = 183
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G++ + FPGY
Sbjct: 13 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVQENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 133 --EIGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 183
>gi|237756125|ref|ZP_04584698.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237691710|gb|EEP60745.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 265
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
E + FPGY+LIKA +TD + +K TP +IGF+ G P P+ ++++ ++ Q++ +
Sbjct: 147 ENKIFPGYILIKAKLTDDLIDLVKKTPFLIGFVSAGGKPVPLNENDVMKVLGQIQKGAPK 206
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ + V +GPF +F G V+ V +K ++ + IFGR TPVEL ++QVEKI
Sbjct: 207 -AKKLLYTKGDIIRVIEGPFMNFTGTVEEVFPDKEKLIALITIFGRATPVELEFSQVEKI 265
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
+WY + SN E +A E+ L + L+HLV E+ +P+E V ++
Sbjct: 27 KWYALYTQSNLEIRAKENFIKNLKLNNLEHLVDEVIVPAEEKVVLK 72
>gi|297587475|ref|ZP_06946119.1| transcription termination/antitermination factor NusG [Finegoldia
magna ATCC 53516]
gi|297574164|gb|EFH92884.1| transcription termination/antitermination factor NusG [Finegoldia
magna ATCC 53516]
Length = 193
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + G + E+ +P+E VS G K ER+ FPG
Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K +TD ++ +++T V GF+G P V++ EI+ + ++ ++ +
Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKEID---V 140
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + G F+ GI++ ++ EK+ V + +FGR T VE++++ +EKI
Sbjct: 141 NIGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193
>gi|315222231|ref|ZP_07864138.1| transcription termination/antitermination factor NusG
[Streptococcus anginosus F0211]
gi|319940425|ref|ZP_08014775.1| transcription antitermination protein nusG [Streptococcus anginosus
1_2_62CV]
gi|315188734|gb|EFU22442.1| transcription termination/antitermination factor NusG
[Streptococcus anginosus F0211]
gi|319810481|gb|EFW06823.1| transcription antitermination protein nusG [Streptococcus anginosus
1_2_62CV]
Length = 178
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQE--FDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG FA + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 DVKVGDTVRIIDGAFADYTGKITEIDNNK--VKMIISLFGNDTVAEVNLNQIAEL 178
>gi|257066639|ref|YP_003152895.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548]
gi|256798519|gb|ACV29174.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548]
Length = 207
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V Y+ E + + I + ++ E+T+P+E V V+ K R+ FPG
Sbjct: 40 RWYVVHTYTGYENRVNDKIQMMIDNEQNPDIL-EVTVPTEEYVEVKNDTKKVKTRKLFPG 98
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV++K +T+K ++ I++T V GF+G P +T +E+ + EA P+ ++
Sbjct: 99 YVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVKDEA----PILNINV 154
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + GPF F V+ VD+EK + V +FGR T ++L + +E I
Sbjct: 155 NVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIETI 207
>gi|1709421|sp|P52852|NUSG_STRGB RecName: Full=Transcription antitermination protein nusG
gi|1213238|emb|CAA65165.1| transcription terminator [Streptomyces galbus]
Length = 309
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PG
Sbjct: 126 EWYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPG 185
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----------EAA 113
YVL++ +T++ + +++TP V GF+G +P P+T EI ++ + A
Sbjct: 186 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAARAEGKPA 245
Query: 114 VQRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
QR V + FEVG V V+DGPFA+ I + + +V V IFG TPVEL+++
Sbjct: 246 PQRKVEVQVLDFEVGASVTVTDGPFATLQTI-NEIKSDSKKVKGLVEIFGWETPVELSFD 304
Query: 172 QVEK 175
Q++K
Sbjct: 305 QIQK 308
>gi|313884771|ref|ZP_07818526.1| transcription termination/antitermination factor NusG [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620032|gb|EFR31466.1| transcription termination/antitermination factor NusG [Eremococcus
coleocola ACS-139-V-Col8]
Length = 181
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 13/176 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K E+I R ++ + + +P E V V+ G + + + FPGY
Sbjct: 7 WYVLHTYSGYENKVKENIDLRKESMDMEDNIFRVEVPEEEVTEVKDGERTSKVEKTFPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +M+D + +++TP V GF+G+ G P+P+ + E+E I+ RP+
Sbjct: 67 VLVEMIMSDDAWFVVRNTPGVTGFVGSHGAGSKPAPLLEEEVEAILG------DRPMKPA 120
Query: 122 FFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
E VG+ V + DGPFA+F+G ++ + +E R+ V + + GR T EL + QV
Sbjct: 121 PVELDVAVGDYVDIVDGPFANFSGQIEEISQETQRLKVVLEMMGRETVTELDFAQV 176
>gi|289548403|ref|YP_003473391.1| NusG antitermination factor [Thermocrinis albus DSM 14484]
gi|289182020|gb|ADC89264.1| NusG antitermination factor [Thermocrinis albus DSM 14484]
Length = 242
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 9/166 (5%)
Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV--RKGRKVNSERRFFPGYVLIKAV 70
N E + +ES+ G L I+ P +++ + K+ E + FPGY+LIKA
Sbjct: 84 NGEVRVIESVEGDLCVEA-----PPISKPGQKITCKENKTEAKIILESKMFPGYLLIKAD 138
Query: 71 MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVC 130
M D + I+ TP + + TG +P+ + E+E I+ V+ V RP S V FE G++V
Sbjct: 139 MDDSLLRAIEKTPHIYRPVLTGGRVAPLDEREVERIIAFVKKGV-RP-SKVLFEKGDQVR 196
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +GPF +F G V V E+ +V V + IFGR+TPVEL ++Q+EK+
Sbjct: 197 VIEGPFMNFTGTVDEVHPEREKVVVLISIFGRLTPVELDFSQIEKL 242
>gi|227486738|ref|ZP_03917054.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC
51172]
gi|227235326|gb|EEI85341.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC
51172]
Length = 192
Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V Y+ E + + I + +V ++T+P+E V V+ K R+ FPG
Sbjct: 27 RWYVVHTYTGYENRVADKIQMMIDNEQNPDIV-DVTVPTEEYVEVKNNDKKVKTRKLFPG 85
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV++K +T K ++ I++T V GF+G +P P+T +E+ + + PV ++
Sbjct: 86 YVMVKMNVTSKSWYIIRNTQGVTGFVGPDGDPVPLTKAEVR----KFGVKEKEPVLNIKV 141
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ V + GPF F + +D EK + V +FGR T ++L Y+ +E
Sbjct: 142 KPGDDVNIIAGPFKDFVAKIDEIDNEKGIIKAYVDMFGRDTLIDLEYSDIE 192
>gi|152964644|ref|YP_001360428.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216]
gi|151359161|gb|ABS02164.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216]
Length = 320
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W+++ Y+ E + ++ R++ ++ + ++ +P E VV V+ G + N R
Sbjct: 131 MPGEWFVIHSYAGYENRVKTNLETRMTSLNMEDYIFQVEVPMEEVVEVKNGTRKNVRRVR 190
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQ 109
PGYVL++ +TD+ + ++ TP V GF+G P P+++ EI ++ +
Sbjct: 191 IPGYVLVRMDLTDESWGAVRHTPGVTGFVGNTHQPVPLSNDEIFSMLAPTLQPTAKAGEK 250
Query: 110 VE---AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
E P V FEVGE V V +GPF + + + ++ ++ V V IFGR TPV
Sbjct: 251 TETGGGTASAPARVVDFEVGESVTVMEGPFETLPATISEISADRQKLTVLVSIFGRETPV 310
Query: 167 ELAYNQVEKI 176
EL +NQV KI
Sbjct: 311 ELNFNQVAKI 320
>gi|307243194|ref|ZP_07525367.1| transcription termination/antitermination factor NusG
[Peptostreptococcus stomatis DSM 17678]
gi|306493455|gb|EFM65435.1| transcription termination/antitermination factor NusG
[Peptostreptococcus stomatis DSM 17678]
Length = 180
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 4/175 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
+WY+V YS E K +I + G+++++ ++ +P+E VV+ K G++ +R+ FP
Sbjct: 8 QWYVVHTYSGHENKVKTTIENTVKNRGMENIIEQVIVPTEDVVTTTKTGKEKMVQRKVFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
YV++K MTD+ ++ +++T V GF+G G P P+T E+ + +E + VS +
Sbjct: 68 SYVIVKMEMTDESWYVVRNTKGVTGFVGPGSKPVPLTVDEVRAM--GIELPASKIVSGEI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V G F G V++V+ EK V V V FGR V L +EKI
Sbjct: 126 DLNPGDTVRVISGAFVDNVGEVEDVNIEKKEVKVYVNAFGRKALVTLGLENIEKI 180
>gi|297571949|ref|YP_003697723.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM
20595]
gi|296932296|gb|ADH93104.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM
20595]
Length = 288
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ Y+ EK+ + R+ ++ + +I +P E V V+KG + R PG
Sbjct: 101 RWYVLHTYAGYEKRVKHDLETRMHSLDMEDYIFQIEVPMEEVFEVKKGSRKLVSRVRIPG 160
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV---EAAVQRPVSS 120
Y LI+ MTD + ++DT V GF+G G P +T E+ ++ + EAAV +
Sbjct: 161 YALIRMKMTDDSWRVVQDTNGVTGFVGNGRTPVALTPDEVVQMLTPIVEKEAAVAVETAG 220
Query: 121 -----------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V + VGE V ++ P+ + VD R+ V + + G+ TPV+L+
Sbjct: 221 KKVGNVGVTLEVEYSVGEIVTLTTEPWMGMPATISQVDAVNQRLTVLMTLVGQETPVDLS 280
Query: 170 YNQVEKI 176
+ QV+K+
Sbjct: 281 FGQVKKM 287
>gi|227499794|ref|ZP_03929889.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC
35098]
gi|227218098|gb|EEI83366.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC
35098]
Length = 206
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+V Y+ E + + I + ++ E+T+P+E V V+ K R+ F
Sbjct: 37 SARWYVVHTYTGYENRVKDKIQMMIDNEQNPDIL-EVTVPTEEYVEVKNDTKKVKTRKLF 95
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV++K +T+K ++ I++T V GF+G P +T E+ + EA P+ ++
Sbjct: 96 PGYVMVKMNVTNKSWYIIRNTQGVTGFVGPDGKPVALTAQEVRKFGVKEEA----PLVNI 151
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G+ + + GPF F V+ +D+EK + V +FGR T ++L + +E I
Sbjct: 152 DLKLGDSINIISGPFKDFVAKVEEIDKEKGTIKAFVDMFGRDTLIDLDFTDIETI 206
>gi|32475090|ref|NP_868084.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1]
gi|32445630|emb|CAD75636.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1]
gi|327542511|gb|EGF28986.1| transcription antitermination protein NusG [Rhodopirellula baltica
WH47]
Length = 225
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 4/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPG 63
WYI++V N E E++ ++ + +I +PSE V + R G++ S+R+ PG
Sbjct: 50 WYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLLPG 109
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEAAVQRPV-SS 120
Y+++ + D + +++ + F G+ P P+ ++E +N+ V+ + P+ ++
Sbjct: 110 YIMVYMSINDDTWFLVREVGGISDFTGSAGKPQPMEPEDVERFINRPAVDDEDETPIKTA 169
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VG+RV V +G F + G V VDE RV V + IFGR P+EL + QVE +
Sbjct: 170 IPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVEPL 225
>gi|188996251|ref|YP_001930502.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931318|gb|ACD65948.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
Length = 265
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
E + FPGY+LIKA ++D + +K TP +IGF+ G P P+ ++++ ++ Q++ +
Sbjct: 147 ENKIFPGYILIKAKLSDDLIDLVKKTPFLIGFVSAGGKPVPLNENDVMKVLGQIQKGTPK 206
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ V V +GPF +F G V+ V +K ++ + IFGR TPVEL ++QVEKI
Sbjct: 207 -AKKLLYTKGDIVRVIEGPFMNFTGTVEEVFPDKEKLIALITIFGRATPVELEFSQVEKI 265
Score = 37.4 bits (85), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
+WY + SN E +A E+ L + L+HLV E+ +P+E V ++
Sbjct: 27 KWYALYTQSNLEIRAKENFVKNLKLNNLEHLVDEVIVPAEEKVVLK 72
>gi|239918213|ref|YP_002957771.1| transcription termination/antitermination factor NusG [Micrococcus
luteus NCTC 2665]
gi|281415596|ref|ZP_06247338.1| transcription termination/antitermination factor NusG [Micrococcus
luteus NCTC 2665]
gi|239839420|gb|ACS31217.1| transcription termination/antitermination factor NusG [Micrococcus
luteus NCTC 2665]
Length = 275
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY+V Y+ EK+ ++ R+ ++ + EI +P E VV ++ RK+ S R PG
Sbjct: 81 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVR-IPG 139
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIM----------NQVEA 112
YVL++ + D + ++ TP V GF+G +P P++ E+ ++ + +A
Sbjct: 140 YVLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYEMLAPSVIQEAARSAEKA 199
Query: 113 AVQRPVSS-----------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ P S+ V FEVGE V V+DGPF + + + E ++ V V IF
Sbjct: 200 GLAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFE 259
Query: 162 RVTPVELAYNQVEKIV 177
R TPV L++NQV K +
Sbjct: 260 RETPVTLSFNQVTKAI 275
>gi|325478598|gb|EGC81710.1| transcription termination/antitermination factor NusG [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 206
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+V Y+ E + + I + ++ E+T+P+E V V+ K R+ F
Sbjct: 37 SARWYVVHTYTGYENRVNDKIQMMIDNEQNPDIL-EVTVPTEEYVEVKNDTKKVKTRKLF 95
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV++K +T+K ++ I++T V GF+G P +T +E+ + ++PV ++
Sbjct: 96 PGYVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVR----KFGVKDEKPVLNI 151
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + GPF F V+ +D EK + V +FGR T ++L + +E I
Sbjct: 152 NVNVGDDVNIISGPFEGFVAKVEEIDSEKGTIKAFVDMFGRDTLIDLDFTDIETI 206
>gi|157150102|ref|YP_001451256.1| transcription antitermination protein NusG [Streptococcus gordonii
str. Challis substr. CH1]
gi|262283603|ref|ZP_06061368.1| transcription termination/antitermination factor NusG
[Streptococcus sp. 2_1_36FAA]
gi|157074896|gb|ABV09579.1| transcription termination/antitermination factor NusG
[Streptococcus gordonii str. Challis substr. CH1]
gi|262260660|gb|EEY79361.1| transcription termination/antitermination factor NusG
[Streptococcus sp. 2_1_36FAA]
Length = 178
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI +I+ + VQ +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQE--FDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 126 HVKVGDTVRIIDGAFTDYTGKITEIDNNK--VKMVISMFGNDTIAEVNLNQIAEL 178
>gi|227832183|ref|YP_002833890.1| transcription antitermination protein [Corynebacterium aurimucosum
ATCC 700975]
gi|262183965|ref|ZP_06043386.1| transcription antitermination protein NusG [Corynebacterium
aurimucosum ATCC 700975]
gi|227453199|gb|ACP31952.1| transcription antitermination protein [Corynebacterium aurimucosum
ATCC 700975]
Length = 302
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+ + + G+K +R+ PG
Sbjct: 108 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQAIEKKDGKKKVVKRKLLPG 167
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV----------------------TDS 101
YVL++ + D + ++DTP V F+G N +PV DS
Sbjct: 168 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKIRDVAKFLMPNDPTVSPEASAADS 227
Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
E E ++ E + + FEVGE V + GP AS + + +D E ++ V IFG
Sbjct: 228 EGEQVVAMPEKEAAKAYAH-DFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFG 286
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 287 RETPVELSPTEIERI 301
>gi|146321834|ref|YP_001201545.1| transcription antitermination protein NusG [Streptococcus suis
98HAH33]
gi|145692640|gb|ABP93145.1| Transcription antiterminator [Streptococcus suis 98HAH33]
Length = 179
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQE--FDI 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ VC+ DG F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 127 DVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQIAEL 179
>gi|300779868|ref|ZP_07089724.1| transcription antitermination protein nusg [Corynebacterium
genitalium ATCC 33030]
gi|300533978|gb|EFK55037.1| transcription antitermination protein nusg [Corynebacterium
genitalium ATCC 33030]
Length = 342
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WYI+Q YS E K ++ R+ ++ + ++ +P E+V K G+K +R+ PG
Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
YVL++ + D + +++TP V F+G N +PV ++ + A V
Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASEA 265
Query: 115 --------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
++P + F+VGE V + G AS + + +D E ++ V IF
Sbjct: 266 NTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSIF 325
Query: 161 GRVTPVELAYNQVEKIV 177
GR TPVEL +Q+E+I+
Sbjct: 326 GRETPVELTADQIERIM 342
>gi|154249533|ref|YP_001410358.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1]
gi|154153469|gb|ABS60701.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1]
Length = 354
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
Query: 35 VTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
V+ + + R + ++K +K ++ +PGY+ ++ +M D + ++ TP V+GF+ G
Sbjct: 211 VSVVDFATRREIVIQKTKK----KKLYPGYLFVEMIMNDHTWEFVRGTPFVMGFVSAGGR 266
Query: 95 PSPVTDSEIEHI--MNQVEAAVQ-RP-VSSVFFEV--GERVCVSDGPFASFNGIVKNVDE 148
P P+ E+ +I M +E VQ +P V+ V E+ G+ V + GPF F+GIVK VDE
Sbjct: 267 PLPLKPEEVHYILRMAGLEETVQAKPQVAKVELEIQPGDAVKIITGPFEGFSGIVKEVDE 326
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EK + V V IFGR TPV + N+VEKI
Sbjct: 327 EKQELKVNVTIFGRETPVTVHLNEVEKI 354
>gi|319790550|ref|YP_004152183.1| NusG antitermination factor [Thermovibrio ammonificans HB-1]
gi|317115052|gb|ADU97542.1| NusG antitermination factor [Thermovibrio ammonificans HB-1]
Length = 246
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72
CEKK + +SR G +I P RV + K+ R +PGY+ IKA +
Sbjct: 94 QCEKKKC-TPDKPISRIG-----QKIKCPENRVEA-----KIELRDRLYPGYIFIKADLD 142
Query: 73 DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
+ I+ P+V+GF+ G P V+++EI+ + +++ V R + + F++G++V +
Sbjct: 143 KDLQSLIRRVPRVLGFVSAGGKPVTVSEAEIQAMKERLKRGVPR-IRKLKFDIGDKVKIK 201
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GPF F G + +D E ++ V V IF R TPVEL ++QVEKI
Sbjct: 202 EGPFIGFEGTISEIDPEHGKLIVLVNIFDRQTPVELEFDQVEKI 245
>gi|262038204|ref|ZP_06011598.1| transcription termination/antitermination factor NusG [Leptotrichia
goodfellowii F0264]
gi|261747785|gb|EEY35230.1| transcription termination/antitermination factor NusG [Leptotrichia
goodfellowii F0264]
Length = 205
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS EKK + R+ L V I +P E V+ ++G+ V R+ FP
Sbjct: 18 KWYIIHTYSGYEKKVATDLEKRIESLNLTDRVFRILVPEEEVLEEKRGKMVKVPRKLFPS 77
Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ- 109
YV+++ + + + ++ I++T V GF+G G +P P++D E +++++
Sbjct: 78 YVMVEMLSVKEENDLGLGYRVDSEAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLSKI 137
Query: 110 -VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ ++ E+GE+V V F G V +D E RV V + +FGR+TPVE
Sbjct: 138 GINGFENENKFNIDVEIGEKVIVKKDSFLDQEGEVAEIDYEHGRVKVLLEVFGRLTPVEF 197
Query: 169 AYNQVEK 175
YN+++K
Sbjct: 198 EYNEIQK 204
>gi|289705066|ref|ZP_06501477.1| transcription termination/antitermination factor NusG [Micrococcus
luteus SK58]
gi|289558229|gb|EFD51509.1| transcription termination/antitermination factor NusG [Micrococcus
luteus SK58]
Length = 294
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 24/196 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY+V Y+ EK+ ++ R+ ++ + EI +P E VV ++ RK+ S R PG
Sbjct: 100 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVR-IPG 158
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEI-----EHIMNQVEAAVQR- 116
YVL++ + D + ++ TP V GF+G +P P++ E+ ++ + A ++
Sbjct: 159 YVLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYDMLAPSVIQEAARAAEKA 218
Query: 117 ---------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
P V FEVGE V V+DGPF + + + E ++ V V IF
Sbjct: 219 GLAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFE 278
Query: 162 RVTPVELAYNQVEKIV 177
R TPV L++NQV K +
Sbjct: 279 RETPVTLSFNQVTKAI 294
>gi|309379175|emb|CBX22306.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 124
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + I +P E+VV +R GR+ SER+
Sbjct: 1 MSKKWYVVQAYSWFEKNVQRTLEERIAREEMVDYFGHILLPVEKVVDIRNGRQTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+P YVL++ M+D ++ +K TP+V GF+ GT P P++ E E I+ QV+ ++P
Sbjct: 61 YPVYVLVEMEMSDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKP 118
>gi|330837666|ref|YP_004412307.1| transcription antitermination protein nusG [Spirochaeta coccoides
DSM 17374]
gi|329749569|gb|AEC02925.1| transcription antitermination protein nusG [Spirochaeta coccoides
DSM 17374]
Length = 189
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 15/187 (8%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--TEITIPSERVVSVRKGRKVNSER 58
M+ WY+V YS+ E+K +E I ++ + D +++ +P E V+ ++ G+K +R
Sbjct: 1 MSKAWYVVNTYSSYEQK-IERILRKMMETDPDFFAVCSDVKVPMETVMDIKDGKKREVKR 59
Query: 59 RFFPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQV-- 110
+ PGY+L++ + + + T IK V GF+ ++ P P++ E++ I +
Sbjct: 60 KLLPGYILVELDLPENSWKTYCSQIKRIQGVTGFVTPNDSMKPQPLSAEEVKSIFQKTGD 119
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+P + F VGE V + +GPF SF G + ++ +K+ + V V IFGR TPVE+
Sbjct: 120 MKTEKTFKPKQT--FSVGEVVKIIEGPFESFTGTIDEINTQKNSLRVSVGIFGRSTPVEV 177
Query: 169 AYNQVEK 175
+ QVEK
Sbjct: 178 GFLQVEK 184
>gi|148269607|ref|YP_001244067.1| NusG antitermination factor [Thermotoga petrophila RKU-1]
gi|281411675|ref|YP_003345754.1| NusG antitermination factor [Thermotoga naphthophila RKU-10]
gi|147735151|gb|ABQ46491.1| transcription antitermination protein nusG [Thermotoga petrophila
RKU-1]
gi|281372778|gb|ADA66340.1| NusG antitermination factor [Thermotoga naphthophila RKU-10]
Length = 353
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----QVEAA 113
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ +
Sbjct: 229 RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEE 288
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++PV + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L ++
Sbjct: 289 KKKPVKVEIGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSE 348
Query: 173 VEKI 176
VEKI
Sbjct: 349 VEKI 352
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M WYIV S E++ E+I ++ +G+ +LV I IP E V+
Sbjct: 1 MKKNWYIVLTMSGYEERVKENIEKKIEATGIKNLVGRIVIPEEVVLD 47
>gi|288818176|ref|YP_003432524.1| transcription antitermination protein [Hydrogenobacter thermophilus
TK-6]
gi|288787576|dbj|BAI69323.1| transcription antitermination protein [Hydrogenobacter thermophilus
TK-6]
gi|308751777|gb|ADO45260.1| NusG antitermination factor [Hydrogenobacter thermophilus TK-6]
Length = 241
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
K+ E + FPGY+LIKA M D + I+ TP V + G P+ + E+E +++ V+
Sbjct: 120 KIILESKMFPGYLLIKAEMNDALLRAIEKTPHVYKPVLVGGRVVPIDEKEVERVISFVKK 179
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V RPV V FE G++V V +GPF +F G V+ V E+ ++ V + IFGR+TPVEL ++Q
Sbjct: 180 GV-RPVK-VLFEKGDQVRVIEGPFMNFTGTVEEVHPEREKIVVLISIFGRLTPVELDFSQ 237
Query: 173 VEKI 176
VEK+
Sbjct: 238 VEKL 241
>gi|15643219|ref|NP_228263.1| N utilization substance protein G [Thermotoga maritima MSB8]
gi|4980959|gb|AAD35536.1|AE001723_6 N utilization substance protein G [Thermotoga maritima MSB8]
Length = 354
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----QVEAA 113
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ +
Sbjct: 230 RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEE 289
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++PV + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L ++
Sbjct: 290 KKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSE 349
Query: 173 VEKI 176
VEKI
Sbjct: 350 VEKI 353
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M +WYIV S E+K E+I ++ +G+ +LV I IP E V+
Sbjct: 2 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLD 48
>gi|128916|sp|P29397|NUSG_THEMA RecName: Full=Transcription antitermination protein nusG
gi|48183|emb|CAA77858.1| NusG [Thermotoga maritima MSB8]
Length = 353
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----QVEAA 113
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ +
Sbjct: 229 RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEE 288
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++PV + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L ++
Sbjct: 289 KKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSE 348
Query: 173 VEKI 176
VEKI
Sbjct: 349 VEKI 352
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M +WYIV S E+K E+I ++ +G+ +LV I IP E V+
Sbjct: 1 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLD 47
>gi|170288283|ref|YP_001738521.1| NusG antitermination factor [Thermotoga sp. RQ2]
gi|170175786|gb|ACB08838.1| NusG antitermination factor [Thermotoga sp. RQ2]
Length = 353
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----QVEAA 113
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ +
Sbjct: 229 RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKDREMRPILRLAGLEEYEE 288
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++PV + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L ++
Sbjct: 289 KKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSE 348
Query: 173 VEKI 176
VEKI
Sbjct: 349 VEKI 352
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M +WYIV S E+K E+I ++ +G+ +LV I IP E V+
Sbjct: 1 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLD 47
>gi|257126639|ref|YP_003164753.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b]
gi|257050578|gb|ACV39762.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b]
Length = 207
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS EKK + R+ L V I +P E V+ ++G++V R+ FP
Sbjct: 17 KWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLFPS 76
Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YV+I+ + + ++ I++T V GF+G G +P P++D E +++ ++
Sbjct: 77 YVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLAKI 136
Query: 111 EAAVQ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
V+ P + F+VGE V V G F G + +D E +V V + + GR+TPVE
Sbjct: 137 GIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLTPVE 196
Query: 168 LAYNQVEKI 176
+ + ++ KI
Sbjct: 197 VEHTEIAKI 205
>gi|325294360|ref|YP_004280874.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064808|gb|ADY72815.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 245
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72
CEKK + ++ + +I P +V + K+ + +PGY+ IKA +
Sbjct: 93 ECEKKKC------IPDKPIEKIGQKIKCPENKVEA-----KIELRDKLYPGYIFIKADLD 141
Query: 73 DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
V TI+ P+V+GF+ G P V ++EI+ + +++ V + + + F++G++V +
Sbjct: 142 KNVQSTIRRVPRVLGFVSAGGKPVVVPEAEIQAMRERLKKGVPK-IKKLKFDIGDKVKIK 200
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GPF F G + +D E+ ++ V V IF R TPVEL ++Q+EKI
Sbjct: 201 EGPFIGFEGSISEIDPEREKIIVLVNIFDRQTPVELEFDQIEKI 244
>gi|296875634|ref|ZP_06899704.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis ATCC 15912]
gi|312866822|ref|ZP_07727035.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis F0405]
gi|296433364|gb|EFH19141.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis ATCC 15912]
gi|311097605|gb|EFQ55836.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis F0405]
Length = 178
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEFDLDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 128 --KVGDTVRIIDGAFTDYTGKITEIDNNK--VKMVISMFGNDTVAEVNLNQIAEL 178
>gi|322390410|ref|ZP_08063931.1| transcription antitermination protein NusG [Streptococcus
parasanguinis ATCC 903]
gi|321142868|gb|EFX38325.1| transcription antitermination protein NusG [Streptococcus
parasanguinis ATCC 903]
Length = 178
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEFDLDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F + G + +D K V + + +FG T E+ NQ+ ++
Sbjct: 128 --KVGDTVRIIDGAFTDYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQIAEL 178
>gi|322386605|ref|ZP_08060230.1| transcription antitermination protein NusG [Streptococcus cristatus
ATCC 51100]
gi|321269278|gb|EFX52213.1| transcription antitermination protein NusG [Streptococcus cristatus
ATCC 51100]
Length = 178
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKSKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVQEFDLDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG FA++ G + +D K V + + +FG T E+ +Q+ ++
Sbjct: 128 --KVGDTVRIIDGAFANYTGKITEIDNNK--VKMIISMFGNDTVAEVNLSQIAEL 178
>gi|289566015|ref|ZP_06446453.1| transcription termination/antitermination factor NusG [Enterococcus
faecium D344SRF]
gi|289162213|gb|EFD10075.1| transcription termination/antitermination factor NusG [Enterococcus
faecium D344SRF]
Length = 156
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +I R + + + +P E+ V+ G++ + FPGY
Sbjct: 8 WYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ + +
Sbjct: 68 VLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQ--NDL 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEK 150
EVGE V + +G FA G V VD EK
Sbjct: 126 EVEVGEVVKIIEGAFAGLEGQVTEVDGEK 154
>gi|315639708|ref|ZP_07894847.1| transcription antitermination protein NusG [Enterococcus italicus
DSM 15952]
gi|315484485|gb|EFU74942.1| transcription antitermination protein NusG [Enterococcus italicus
DSM 15952]
Length = 214
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +I R + + + +P E V+ G++ + FPGY
Sbjct: 42 WYVLHTYSGYENKVKTNIESRAQSMRMGDYIFRVVVPEEVEKEVKNGKEKEIVHKTFPGY 101
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ +MTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + V
Sbjct: 102 VLVEMIMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSLGMSTRTVELKV 161
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + +G F+ G V +DEE+ ++ V + +FGR T EL ++QV+ I
Sbjct: 162 --ALGQTVKIIEGAFSGLEGQVTEIDEERQKLKVNIDMFGRETSTELDFDQVDDI 214
>gi|20808504|ref|NP_623675.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
gi|20517125|gb|AAM25279.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
Length = 179
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P WY+V Y N EK+ E I D L+ + +P ++ R+G+ E + FP
Sbjct: 14 PLWYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV +KAVMT +V I+ V F+G G P P+T E++ A +Q +S
Sbjct: 74 GYVFVKAVMTPEVMAAIRRINGVAHFVGGGNEPVPITPEEVKR------ARIQDDLSEE- 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ G+ V ++DGPF +F G + + E ++++ + +F R ++ + Q+ KI
Sbjct: 127 FKAGDTVMITDGPFENFIGKIIKI--EGRKINIALSLFDREMGIDFSPEQIMKI 178
>gi|213964871|ref|ZP_03393070.1| transcription antitermination protein NusG [Corynebacterium
amycolatum SK46]
gi|213952407|gb|EEB63790.1| transcription antitermination protein NusG [Corynebacterium
amycolatum SK46]
Length = 294
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WYI+Q YS E K ++ R G+D + E+ +P E V + G+K +R+ PG
Sbjct: 99 WYIIQCYSGYENKVKTNLEMRAQTMGVDEQIHEVIVPVEEVEERKDDGKKKIVKRKLLPG 158
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
YVL++ + D + ++DTP V F+G+ PS V E+ +
Sbjct: 159 YVLVRMSLDDPSWSVVRDTPGVTSFVGSEGQPSKVKIREVAKFLMPKETITADAAEEAAN 218
Query: 109 -----QVEAAVQ--RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V AA Q + ++ +EVGE V + GPFAS + +D + R+ V IFG
Sbjct: 219 ADGELAVAAAPQAEKKAVAIDYEVGESVTILSGPFASVAATISEIDPDTGRMKALVSIFG 278
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL ++VEK+
Sbjct: 279 RETPVELGIDEVEKL 293
>gi|309802977|ref|ZP_07697078.1| putative transcription termination/antitermination factor NusG
[Bifidobacterium dentium JCVIHMP022]
gi|308220444|gb|EFO76755.1| putative transcription termination/antitermination factor NusG
[Bifidobacterium dentium JCVIHMP022]
Length = 247
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 98/179 (54%), Gaps = 17/179 (9%)
Query: 11 YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPGYVLIKA 69
Y+ K VES R++ GL+ + +I +P E V KG+K+ + R PGYVLI+
Sbjct: 72 YTKRVKTNVES---RVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRV-PGYVLIRM 127
Query: 70 VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------EAAVQRP 117
+ + +++T V GF+G + P+P++ E+ +M + AA ++
Sbjct: 128 LPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKPAAAKKR 187
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +NQVEK+
Sbjct: 188 TLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFNQVEKL 246
>gi|229830146|ref|ZP_04456215.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM
14600]
gi|229791444|gb|EEP27558.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM
14600]
Length = 165
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
+ YS E K I ++ L + E+ +P + VV V+ G + ++ FPGYVL
Sbjct: 1 MAHTYSGYENKVKADIEKTVANRHLQDQILEVMVPMQDVVEVKNGVRKTVSKKIFPGYVL 60
Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
I M D ++ +++T GF+G G +P P+T+ E+ + + V F VG
Sbjct: 61 INMYMNDDTWYVVRNTRGATGFVGPGSDPVPLTEREMSKM------GIHTENIEVDFGVG 114
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V V G + G+V+ ++ K + + V +FGR TPVE+++ V+K+
Sbjct: 115 DTVSVIGGAWKDTVGVVQAMNPNKQSLTINVELFGRETPVEISFTDVQKM 164
>gi|125718987|ref|YP_001036120.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK36]
gi|323350655|ref|ZP_08086316.1| transcription antitermination protein NusG [Streptococcus sanguinis
VMC66]
gi|125498904|gb|ABN45570.1| Transcription antitermination factor NusG, putative [Streptococcus
sanguinis SK36]
gi|322123075|gb|EFX94766.1| transcription antitermination protein NusG [Streptococcus sanguinis
VMC66]
gi|324989882|gb|EGC21825.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK353]
gi|324992605|gb|EGC24526.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK405]
gi|324995865|gb|EGC27776.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK678]
gi|325686704|gb|EGD28730.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK72]
gi|325688846|gb|EGD30854.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK115]
gi|325695370|gb|EGD37270.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK150]
gi|325697311|gb|EGD39197.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK160]
gi|327460008|gb|EGF06347.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1]
gi|327463500|gb|EGF09819.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1057]
gi|327467893|gb|EGF13383.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK330]
gi|327472154|gb|EGF17591.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK408]
gi|327488598|gb|EGF20398.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1058]
gi|328944700|gb|EGG38861.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1087]
Length = 178
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI +I+ + VQ V
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEFDLDV 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F + G + +D K V + + +FG T E+ +Q+ ++
Sbjct: 128 --KVGDTVRIIDGAFTDYTGKITEIDNNK--VKMIISMFGNDTVAEVNLSQIAEL 178
>gi|146319637|ref|YP_001199349.1| transcription antitermination protein NusG [Streptococcus suis
05ZYH33]
gi|145690443|gb|ABP90949.1| Transcription antiterminator [Streptococcus suis 05ZYH33]
Length = 179
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAHTYNMWENILRVEIPNQTVQVEKNGEVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + + +TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 69 VLVEMVMTDEAWFVVCNTPNVTGFVGSHGNRSKPNPLLEEEIRQILVFMGQTVQE--FDI 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ VC+ DG F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 127 DVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQIAEL 179
>gi|194246777|ref|YP_002004416.1| Transcription antitermination protein NusG [Candidatus Phytoplasma
mali]
gi|193807134|emb|CAP18572.1| Transcription antitermination protein NusG [Candidatus Phytoplasma
mali]
Length = 195
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
+WYI+Q YS CE ++ + + E+ P E V+ G+K ER +
Sbjct: 21 KWYILQTYSGCENSVKNNLLQVADSMNMLDSIIEVVSPKEFYTEVKNDGKKKKKERHIYS 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ IK +MT + ++ +K+ P+V GFLG+ N P P+++ EI+ I+ ++ + ++
Sbjct: 81 GYIFIKMIMTQRSFYLVKNVPRVNGFLGSLNNHTKPVPLSEREIKPILMKIGMLSKNDLN 140
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + G F+ V +VD ++ +V VE+ +FGR TP+E+ +Q ++I
Sbjct: 141 ---YLNGKNVEIISGSFSGQICKVLHVDNQQEKVTVEIDLFGRSTPIEIYCSQFKEI 194
>gi|164686515|ref|ZP_02210543.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM
16795]
gi|164604384|gb|EDQ97849.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM
16795]
Length = 179
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
+WY+V YS E K +I + G++ + ++ +P+E V+ K G++ +R+ +P
Sbjct: 8 KWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKVRQRKIYP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ ++TD+ ++ +++T V GF+G G P P+++ E++ + ++ ++
Sbjct: 68 SYVLIQMIITDESWYIVRNTKGVTGFVGPGSKPVPLSEEEVKSMGIDLDKIGEKRTE--- 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
EVGE V V DG F +G+VK +D + +V + V
Sbjct: 125 IEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISV 159
>gi|195952631|ref|YP_002120921.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1]
gi|195932243|gb|ACG56943.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1]
Length = 245
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 8/144 (5%)
Query: 37 EITIPSERVVSV--RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
EI+ P +++ + K+ + + FPGY+L+KA M D++ I+ P V + G
Sbjct: 106 EISKPGQKITCKDNKTEAKIVLDNKMFPGYILLKAHMDDRLLRAIEKAPHVYKPVLVGGK 165
Query: 95 PSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
+P+ + E+ N++ A QR FE GE+V + +GPF SF G ++ V+ E+ +
Sbjct: 166 IAPLKEEEV----NKILAHAQRGFKTKKAVFEKGEQVRIIEGPFMSFTGTIEEVNLEREK 221
Query: 153 VHVEVVIFGRVTPVELAYNQVEKI 176
++V + IFGR+TPVEL ++QVEKI
Sbjct: 222 LNVLISIFGRLTPVELDFSQVEKI 245
>gi|260890608|ref|ZP_05901871.1| transcription termination/antitermination factor NusG [Leptotrichia
hofstadii F0254]
gi|260859653|gb|EEX74153.1| transcription termination/antitermination factor NusG [Leptotrichia
hofstadii F0254]
Length = 207
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS EKK + R+ L V I +P E V+ ++G+ V R+ FP
Sbjct: 17 KWYIIHTYSGYEKKVAADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLFPS 76
Query: 64 YVLIKA--------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+I+ V +D ++ I++T V GF+G G +P P++D E ++ +
Sbjct: 77 YVMIEMRSVREENELGLGYRVDSD-AWYVIRNTNGVTGFVGVGSDPIPLSDEEASDLLAK 135
Query: 110 VEAAVQ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
V V P + F+VGE V + G F G + +D E +V V + + GR+TPV
Sbjct: 136 VGMDVDGENAPRIGIDFKVGEVVAIRGGSFDGQQGEISEIDYEHGKVKVMLEVLGRLTPV 195
Query: 167 ELAYNQVEKI 176
E+ + ++ KI
Sbjct: 196 EVEHTEIAKI 205
>gi|255326801|ref|ZP_05367877.1| transcription termination/antitermination factor NusG [Rothia
mucilaginosa ATCC 25296]
gi|255296018|gb|EET75359.1| transcription termination/antitermination factor NusG [Rothia
mucilaginosa ATCC 25296]
Length = 248
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 68 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEI--------EHIMNQVEAAVQ 115
VL++ +TD + ++ TP V GF+G NP P+ E+ E V
Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V G F + V + E ++ V + +FGR TPV L++ ++EK
Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247
Query: 176 I 176
I
Sbjct: 248 I 248
>gi|311112018|ref|YP_003983240.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa ATCC 17931]
gi|310943512|gb|ADP39806.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa ATCC 17931]
Length = 242
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 62 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 122 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEEQQSKGLPTP 181
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V GPF + + + E +V + +F R TPV L +NQ+EK
Sbjct: 182 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 241
Query: 176 I 176
I
Sbjct: 242 I 242
>gi|296119180|ref|ZP_06837750.1| transcription antitermination protein NusG [Corynebacterium
ammoniagenes DSM 20306]
gi|295967806|gb|EFG81061.1| transcription antitermination protein NusG [Corynebacterium
ammoniagenes DSM 20306]
Length = 299
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + ++ +P E+V+ + G+K +R+ PG
Sbjct: 104 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQVLENKDGKKKLVKRKLLPG 163
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++ + D + ++DTP V F+G N +PV ++ +
Sbjct: 164 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLLPKEGAAAAGDAAANA 223
Query: 108 ---NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
QV + ++ + + + VGE V + GPFAS + + +DEE ++ V IFG
Sbjct: 224 AEGEQVISMPEKEEAKKYAHDYVVGEAVTILSGPFASVSATISEIDEETGKMVGLVSIFG 283
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 284 RETPVELSPTEIERI 298
>gi|295396488|ref|ZP_06806649.1| transcription termination/antitermination factor NusG
[Brevibacterium mcbrellneri ATCC 49030]
gi|294970680|gb|EFG46594.1| transcription termination/antitermination factor NusG
[Brevibacterium mcbrellneri ATCC 49030]
Length = 270
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + E+ +P E VV V+ ++ R PGY
Sbjct: 81 WYVIHSYAGYENRVKANLENRTVSLDMEDYIFEVQVPMEDVVEVKNAQRKTVRRVRIPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G +P P+T E+ ++ V
Sbjct: 141 VLVRMELTDESWGVVRHTPGVTGFVGNAYDPIPLTMDEVVSMLAPVIEEHEAARAAEEGE 200
Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EAA + V FEVGE V V +G F ++ + E+ ++ V + IF R P
Sbjct: 201 ARKAAEAASGSEI-VVEFEVGETVMVKEGSFEGHPATIQEIRPEQQKLTVLLSIFERDVP 259
Query: 166 VELAYNQVEKI 176
VEL + QV KI
Sbjct: 260 VELGFGQVSKI 270
>gi|283457498|ref|YP_003362079.1| transcription antiterminator [Rothia mucilaginosa DY-18]
gi|283133494|dbj|BAI64259.1| transcription antiterminator [Rothia mucilaginosa DY-18]
Length = 248
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 68 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEI--------EHIMNQVEAAVQ 115
VL++ +TD + ++ TP V GF+G NP P+ E+ E V
Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V G F + V + E ++ V + +FGR TPV L++ ++EK
Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247
Query: 176 I 176
I
Sbjct: 248 I 248
>gi|160947356|ref|ZP_02094523.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270]
gi|158446490|gb|EDP23485.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270]
Length = 179
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + G D + E+ +P+ V + K+ ER+ FPG
Sbjct: 15 KWYVVHTYSGHENKVKANIEKLVVNRGNDIDIFEVVVPT--VKEETETGKI-KERQLFPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K ++TD ++ +++T V GF+G+G P P+++ E+E + +P +V
Sbjct: 72 YVLVKMIITDISWYLVRNTRGVTGFVGSGNKPVPLSEKEVEAL-----GVSAKPYDNVDI 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + + DG F V V +E ++ V +FGR T EL ++ V K
Sbjct: 127 HEGDSITIIDGAFKDLTAKVIEVSQENGKLKAFVSLFGRDTLAELDFSDVIK 178
>gi|300742100|ref|ZP_07072121.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa M567]
gi|300381285|gb|EFJ77847.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa M567]
Length = 255
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 75 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 135 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEDQQSKGLPTP 194
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V GPF + + + E +V + +F R TPV L +NQ+EK
Sbjct: 195 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 254
Query: 176 I 176
I
Sbjct: 255 I 255
>gi|253752634|ref|YP_003025775.1| transcription antitermination factor [Streptococcus suis SC84]
gi|253754460|ref|YP_003027601.1| transcription antitermination factor [Streptococcus suis P1/7]
gi|253756393|ref|YP_003029533.1| transcription antitermination factor [Streptococcus suis BM407]
gi|330833594|ref|YP_004402419.1| transcription antitermination factor [Streptococcus suis ST3]
gi|251816923|emb|CAZ52572.1| transcription antitermination factor [Streptococcus suis SC84]
gi|251818857|emb|CAZ56700.1| transcription antitermination factor [Streptococcus suis BM407]
gi|251820706|emb|CAR47468.1| transcription antitermination factor [Streptococcus suis P1/7]
gi|329307817|gb|AEB82233.1| transcription antitermination factor [Streptococcus suis ST3]
Length = 179
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQE--FDI 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F + G + +D K V + + +FG T E+ +Q+ ++
Sbjct: 127 DVKVGDTVRIIDGAFTDYTGKITEIDNNK--VKMVISMFGNDTIAEVNLSQIAEL 179
>gi|184200230|ref|YP_001854437.1| transcription antitermination protein NusG [Kocuria rhizophila
DC2201]
gi|183580460|dbj|BAG28931.1| transcription antitermination protein NusG [Kocuria rhizophila
DC2201]
Length = 294
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 26/195 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E + ++ R+ ++ + +I +P E VV ++ ++ R PGY
Sbjct: 103 WFVIHTYAGYENRVKTNLETRIQSLNMEEDIFQIEVPMEEVVEIKNSQRKTVRRVRIPGY 162
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIM---------------- 107
VL++ +TD + ++ TP V GF+G NP+P+ E+ ++
Sbjct: 163 VLVRMNLTDASWGAVRHTPGVTGFVGQDAYNPAPLRLDEVFDMLAPTFETPEKAKGLGET 222
Query: 108 ------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+Q AA Q +V FEVGE V V +GPF + + + E ++ V V IF
Sbjct: 223 AGPGAGSQGGAAQQ---VTVDFEVGESVIVKEGPFETLPATISEIKVESQQLVVLVSIFE 279
Query: 162 RVTPVELAYNQVEKI 176
R TPV L +NQV KI
Sbjct: 280 RETPVTLGFNQVTKI 294
>gi|307718195|ref|YP_003873727.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM
6192]
gi|306531920|gb|ADN01454.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM
6192]
Length = 184
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ Y+ E + +++ + + ++ +P E VV V+ G++ + R+F
Sbjct: 1 MARGWYVLHTYTGYENRVEKTLRKLMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60
Query: 61 FPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGT-GEN-PSPVTDSEIEHIMNQV-EAA 113
PGYVL++ + D V I+ V GF+GT G++ P P++ E+ I+ + E
Sbjct: 61 LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+R + F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q
Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180
Query: 173 VEKI 176
VEKI
Sbjct: 181 VEKI 184
>gi|260880966|ref|ZP_05403283.2| transcription termination/antitermination factor NusG [Mitsuokella
multacida DSM 20544]
gi|260850064|gb|EEX70071.1| transcription termination/antitermination factor NusG [Mitsuokella
multacida DSM 20544]
Length = 184
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 99/173 (57%), Gaps = 7/173 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + +++ + +P E V ++ G+K R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLIHTANMGNMIFNVVVPVEDEVEIKDGKKKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123
VL+ ++ + ++ +++T V GF+G+ ++P P+TD+E + I+ + E +P V
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTDAEAKRILKSMGEEQEHKPELDV-- 135
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ G F ++ G V +D EK+R+ V V TP+EL ++QVE +
Sbjct: 136 AVGDVVRINSGVFENYTGTVSEIDTEKARLKVIV----EETPIELGFDQVETL 184
>gi|312865546|ref|ZP_07725773.1| transcription termination/antitermination factor NusG
[Streptococcus downei F0415]
gi|311099064|gb|EFQ57281.1| transcription termination/antitermination factor NusG
[Streptococcus downei F0415]
Length = 180
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMTENILRVEIPTQTVNVEKNGKTKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD + +++TP V GF+G+ N P+P+ + EI I+ + V+ V
Sbjct: 69 VLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVE--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V ++ E ++V + + +FG T E+ Q+ +I
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRV--IEIENNKVKIMINMFGSETAAEVELYQIAEI 179
>gi|315186342|gb|EFU20103.1| transcription antitermination protein nusG [Spirochaeta thermophila
DSM 6578]
Length = 184
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ Y+ E + +++ + + ++ +P E VV V+ G++ + R+F
Sbjct: 1 MARGWYVLHTYTGYENRVEKTLRKFMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60
Query: 61 FPGYVLIKAVMTD----KVYHTIKDTPKVIGFLGT-GEN-PSPVTDSEIEHIMNQV-EAA 113
PGYVL++ + D V I+ V GF+GT G++ P P++ E+ I+ + E
Sbjct: 61 LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+R + F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q
Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180
Query: 173 VEKI 176
VEKI
Sbjct: 181 VEKI 184
>gi|46446233|ref|YP_007598.1| transcription antitermination protein NusG [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399874|emb|CAF23323.1| probable transcription antitermination factor NusG [Candidatus
Protochlamydia amoebophila UWE25]
Length = 124
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+LIK ++D+ + +K+T VI FLG G+ P+P+TD E+ I+ +E ++
Sbjct: 2 WPGYLLIKMNLSDESWQYVKNTNGVIDFLG-GDKPTPLTDFEVGEILKDLEDKKRKITQK 60
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
FEVG+RV ++DG F +F G V V +K R+ V V IFGR T V +L + QVE+I
Sbjct: 61 HKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 117
>gi|241895135|ref|ZP_04782431.1| transcriptional antiterminator NusG [Weissella paramesenteroides
ATCC 33313]
gi|241871631|gb|EER75382.1| transcriptional antiterminator NusG [Weissella paramesenteroides
ATCC 33313]
Length = 184
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E + ++ R+ G+ + + +P + V + G + FPG
Sbjct: 9 QWYVLHTYAGYENRVKSNLESRIETMGMTDYIFRVLVPEQEVEVEKDGETKIVKENDFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y L++ +MTD+ ++ +++TP V GFLG+ G P P+ E++ ++ ++ V+R V
Sbjct: 69 YALVEMIMTDEAWYVVRNTPGVTGFLGSHGGGSKPVPLLPEEVDDMLARMN-LVERKVEH 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V V G FA G + +D+E V + + +FGR TP ++++N ++ +
Sbjct: 128 LDVVVGDSVDVVSGSFAGQEGEITAIDDEHQEVTILINMFGRDTPTQISFNDIKPV 183
>gi|296130513|ref|YP_003637763.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109]
gi|296022328|gb|ADG75564.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109]
Length = 255
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 100/186 (53%), Gaps = 18/186 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + ++ +P E VV ++ ++ +R PGY
Sbjct: 74 WYVIHSYAGYENRVKANLESRTQSLNMEDYIHQVEVPMEEVVEIKNAQRKVVKRVRIPGY 133
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
VL++ +TD+ + ++ TP V GF+G P P+T ++ + + + A++
Sbjct: 134 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLT---LDEVFSMLAPAIETKAPAQQAA 190
Query: 116 ----RPVSSVFFEVGERVCVSD-GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+PV V F VGE V V+D GPF + + ++ E ++ V V +FGR TPVEL++
Sbjct: 191 KASSKPV-EVDFTVGESVTVTDGGPFDTLPATISEINPENQKLKVLVSLFGRETPVELSF 249
Query: 171 NQVEKI 176
+QV KI
Sbjct: 250 SQVSKI 255
>gi|322373828|ref|ZP_08048363.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C150]
gi|321277200|gb|EFX54270.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C150]
Length = 179
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVD--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V +D K ++ + +FG T EL Q+ ++
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEIDNNKVKIMIN--MFGSETAAELELYQIAEL 179
>gi|133872302|gb|ABO40221.1| transcription antitermination component [Candidatus Liberibacter
africanus]
Length = 49
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 46/49 (93%)
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VCVSDGPFASFNGIVK+VDEE+SR+ VEV IFGR TPVELAYNQVEK+V
Sbjct: 1 VCVSDGPFASFNGIVKDVDEERSRLKVEVSIFGRATPVELAYNQVEKVV 49
>gi|55820313|ref|YP_138755.1| transcription antitermination protein NusG [Streptococcus
thermophilus LMG 18311]
gi|55822203|ref|YP_140644.1| transcription antitermination protein NusG [Streptococcus
thermophilus CNRZ1066]
gi|116627154|ref|YP_819773.1| transcription antitermination protein NusG [Streptococcus
thermophilus LMD-9]
gi|228476487|ref|ZP_04061177.1| transcription termination/antitermination factor NusG
[Streptococcus salivarius SK126]
gi|312864059|ref|ZP_07724295.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis F0396]
gi|322517533|ref|ZP_08070402.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis ATCC 49124]
gi|55736298|gb|AAV59940.1| transcription antitermination factor [Streptococcus thermophilus
LMG 18311]
gi|55738188|gb|AAV61829.1| transcription antitermination factor [Streptococcus thermophilus
CNRZ1066]
gi|116100431|gb|ABJ65577.1| Transcription antiterminator [Streptococcus thermophilus LMD-9]
gi|228251908|gb|EEK10954.1| transcription termination/antitermination factor NusG
[Streptococcus salivarius SK126]
gi|311100472|gb|EFQ58679.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis F0396]
gi|312277631|gb|ADQ62288.1| Transcription antitermination protein nusG [Streptococcus
thermophilus ND03]
gi|322123793|gb|EFX95367.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis ATCC 49124]
Length = 179
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVD--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRV--VEIENNKVKIMINMFGSETAAELELYQIAEL 179
>gi|239947116|ref|ZP_04698869.1| transcription antitermination protein NusG [Rickettsia endosymbiont
of Ixodes scapularis]
gi|239921392|gb|EER21416.1| transcription antitermination protein NusG [Rickettsia endosymbiont
of Ixodes scapularis]
Length = 83
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P +T+SEI++I N +EA + +S +EVGE V V+DGPF +F G V+ +D+EK+R+
Sbjct: 1 PRALTESEIQNIFNNLEAEAKEAKNSKLYEVGEIVAVTDGPFETFMGTVEEIDQEKNRLK 60
Query: 155 VEVVIFGRVTPVELAYNQVEK 175
V V IFG+ TP+EL +NQV+K
Sbjct: 61 VSVSIFGKATPIELNFNQVKK 81
>gi|319759050|gb|ADV70992.1| transcription antitermination factor [Streptococcus suis JS14]
Length = 179
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ +
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQE--FDI 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + D F + G + +D K V + + +FG T E+ +Q+ ++
Sbjct: 127 DVKVGDTVRIIDSAFTDYTGKITEIDNNK--VKMVISMFGNDTIAEVNLSQIAEL 179
>gi|239618207|ref|YP_002941529.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1]
gi|239507038|gb|ACR80525.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1]
Length = 354
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAV 114
R +PGY+ I+ +MTD+ ++ +K TP V+ F+ G P + EI+ ++ V
Sbjct: 231 RLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQPIELKPKEIKALLRLVGLEEYEEK 290
Query: 115 QRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
RP+ V FEV E V ++ GPF F G + +D E+ V V V IFGR TPV L +++
Sbjct: 291 TRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVMLNLSEI 350
Query: 174 EKIV 177
EKIV
Sbjct: 351 EKIV 354
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE 43
M +WYI+Q YS E E++ ++ G DHL I +P E
Sbjct: 1 MRKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPEE 43
>gi|320547809|ref|ZP_08042093.1| transcription termination/antitermination factor NusG
[Streptococcus equinus ATCC 9812]
gi|320447569|gb|EFW88328.1| transcription termination/antitermination factor NusG
[Streptococcus equinus ATCC 9812]
Length = 183
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VVDT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 131 NIKAGDVVQIIDGAFAGQEGRV--VEIENNKVKLMINMFGTETQAELELYQIAEL 183
>gi|254973718|ref|ZP_05270190.1| transcription antitermination protein [Clostridium difficile
QCD-66c26]
gi|255091108|ref|ZP_05320586.1| transcription antitermination protein [Clostridium difficile CIP
107932]
gi|255312762|ref|ZP_05354345.1| transcription antitermination protein [Clostridium difficile
QCD-76w55]
gi|255515522|ref|ZP_05383198.1| transcription antitermination protein [Clostridium difficile
QCD-97b34]
gi|255648616|ref|ZP_05395518.1| transcription antitermination protein [Clostridium difficile
QCD-37x79]
gi|260681833|ref|YP_003213118.1| transcription antitermination protein [Clostridium difficile CD196]
gi|260685431|ref|YP_003216564.1| transcription antitermination protein [Clostridium difficile
R20291]
gi|306518739|ref|ZP_07405086.1| transcription antitermination protein [Clostridium difficile
QCD-32g58]
gi|260207996|emb|CBA60162.1| transcription antitermination protein [Clostridium difficile CD196]
gi|260211447|emb|CBE01557.1| transcription antitermination protein [Clostridium difficile
R20291]
Length = 180
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY+V YS E K +I + G++ + ++ +P+E VV K G++ +R+ +P
Sbjct: 9 WYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKVYPS 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVF 122
YVL+K ++TD+ ++ +++T V GF+G G P P+++ E++ + ++ + V S V
Sbjct: 69 YVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEVKAMGIDTTDPKVVN--SDVD 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+G+ V VS GPF+ G ++ +D E V V + FG+ T + +EKI
Sbjct: 127 FEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180
>gi|126697627|ref|YP_001086524.1| transcription antitermination protein [Clostridium difficile 630]
gi|255099220|ref|ZP_05328197.1| transcription antitermination protein [Clostridium difficile
QCD-63q42]
gi|255305002|ref|ZP_05349174.1| transcription antitermination protein [Clostridium difficile ATCC
43255]
gi|255654149|ref|ZP_05399558.1| transcription antitermination protein [Clostridium difficile
QCD-23m63]
gi|296449812|ref|ZP_06891580.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP08]
gi|296877876|ref|ZP_06901897.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP07]
gi|115249064|emb|CAJ66875.1| transcription antitermination protein [Clostridium difficile]
gi|296261356|gb|EFH08183.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP08]
gi|296431130|gb|EFH16956.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP07]
Length = 180
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY+V YS E K +I + G++ + ++ +P+E VV K G++ +R+ +P
Sbjct: 9 WYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKVYPS 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVF 122
YVL+K ++TD+ ++ +++T V GF+G G P P+++ E++ + ++ + V S +
Sbjct: 69 YVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEVKAMGIDTTDPKVVN--SDID 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+G+ V VS GPF+ G ++ +D E V V + FG+ T + +EKI
Sbjct: 127 FEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180
>gi|325977351|ref|YP_004287067.1| transcription antitermination protein nusG [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177279|emb|CBZ47323.1| Transcription antitermination protein nusG [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 183
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VIDT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 131 NIKPGDVVQIIDGAFAGQEGRV--VEIENNKVKLMINMFGTETQAELELYQIAEL 183
>gi|288904354|ref|YP_003429575.1| transcription antitermination factor [Streptococcus gallolyticus
UCN34]
gi|288731079|emb|CBI12625.1| transcription antitermination factor [Streptococcus gallolyticus
UCN34]
Length = 179
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VIDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 127 NIKPGDVVQIIDGAFAGQEGRV--VEIENNKVKLMINMFGTETQAELELYQIAEL 179
>gi|289422487|ref|ZP_06424330.1| transcription termination/antitermination factor NusG
[Peptostreptococcus anaerobius 653-L]
gi|289157059|gb|EFD05681.1| transcription termination/antitermination factor NusG
[Peptostreptococcus anaerobius 653-L]
Length = 180
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
+WY+V YS E K +I + G++ ++ ++ +P+E VV+ K G++ ++R+ FP
Sbjct: 8 KWYVVHTYSGHENKVKTTIENTVKNRGMEDIIEQVIVPTEEVVTTTKTGKEKLTQRKVFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV++K MTD+ ++ +++T V GF+G G P P+T E++ + ++ P S +
Sbjct: 68 SYVIVKMEMTDESWYIVRNTKGVTGFVGPGSKPVPLTVDEVKAM------GIELPASKII 121
Query: 123 -----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V G F G V +V+ EK V V V FGR V L +EK+
Sbjct: 122 SGEIDLAPGDTVKVISGAFVDNVGEVDDVNIEKREVKVYVNAFGRKALVTLGLENIEKV 180
>gi|292670290|ref|ZP_06603716.1| transcription antitermination factor NusG [Selenomonas noxia ATCC
43541]
gi|292648021|gb|EFF65993.1| transcription antitermination factor NusG [Selenomonas noxia ATCC
43541]
Length = 183
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + + V
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGGAPKRRTKV--S 135
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ G F + G + ++D RV V+V TP+++ +QVE I
Sbjct: 136 VGDTVRIASGAFEDYAGKITSIDSSGLRVQVDV----EGTPLDVEIDQVELI 183
>gi|171778894|ref|ZP_02919956.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282540|gb|EDT47964.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 183
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 13 WFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 73 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VVDT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F+ G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 131 NIKAGDVVQIIDGAFSGQEGRV--VEIENNKVKLMINMFGTETQAELELYQIAEL 183
>gi|306830387|ref|ZP_07463557.1| transcription termination/antitermination factor NusG
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
gi|304427412|gb|EFM30514.1| transcription termination/antitermination factor NusG
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
Length = 215
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 45 WFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFPGY 104
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 105 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VIDT 162
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 163 NIKPGDVVQIIDGAFAGQEGRV--VEIENNKVKLMINMFGTETQAELELYQIAEL 215
>gi|331035493|gb|AEC53050.1| NusG antitermination factor [Synechococcus phage S-CRM01]
Length = 193
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 22/190 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY VQV + CEKKA+ + R S G D + ++ +P VV+V KG+K +++ PG
Sbjct: 7 WYCVQVAAGCEKKAMADLKARKSVLG-DIFIQDVEVPQHTVVTVDDKGKKKSTKTNILPG 65
Query: 64 YVLIKA---------------VMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIM 107
Y+L++ V + I+ T V+GF G + P + SE+ I
Sbjct: 66 YILVQVKKEKIETEEEGVFVEVFPASSHDIIRSTFNVLGFAGPDKKKPRVMPASEVRTIF 125
Query: 108 NQVEAAVQRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+QV+ A + +++ ++VG+++ V +GPF N IV ++ +K V EV +FGR+T
Sbjct: 126 SQVDDAYKETKTNLLADYKVGDKLTVINGPFEGKNIIVDSIRGDK--VTAEVDMFGRITT 183
Query: 166 VELAYNQVEK 175
VE + Q+ K
Sbjct: 184 VEFSKEQLLK 193
>gi|307297340|ref|ZP_07577146.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916600|gb|EFN46982.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
Length = 355
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-----EAA 113
R +PGYV I+ +M ++ ++ +K+TP V+ F+ G P + + EI+ ++ V E
Sbjct: 231 RLYPGYVFIEMIMNEETWNLVKNTPNVVNFVSVGGQPVQLKEKEIKALLRLVGIEEYEEH 290
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ PV V F+VGE V ++ GPF F G V ++D ++ + V V IFGR TPV L+ ++
Sbjct: 291 MGGPVKIEVEFDVGEVVRINSGPFEDFVGKVTDLDPDRQELKVVVSIFGRETPVILSLSE 350
Query: 173 VEKIV 177
VEKIV
Sbjct: 351 VEKIV 355
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE 43
M +W+I+Q YS E E+I ++ G H+ +I +P E
Sbjct: 1 MRKKWFIIQTYSGLENSIREAIQIKIESFGFSHMFGKILVPEE 43
>gi|306832628|ref|ZP_07465767.1| transcription termination/antitermination factor NusG
[Streptococcus bovis ATCC 700338]
gi|304425236|gb|EFM28363.1| transcription termination/antitermination factor NusG
[Streptococcus bovis ATCC 700338]
Length = 215
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 45 WFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFPGY 104
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 105 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VIDT 162
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 163 NIKPGDVVQIIDGAFAGQEGRV--VEIENNKVKLMINMFGTETQAELELYQIAEL 215
>gi|217076740|ref|YP_002334456.1| transcription termination/antitermination factor NusG [Thermosipho
africanus TCF52B]
gi|217036593|gb|ACJ75115.1| transcription termination/antitermination factor NusG [Thermosipho
africanus TCF52B]
Length = 354
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97
I P+++ + V+K + R+ FPGY+ ++ +M D+ +H ++ P +I F+ +G P P
Sbjct: 213 IDFPTKKEIKVQKVKV----RKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPIP 268
Query: 98 VTDSEIEHIMNQ--VEAAVQ----RPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEK 150
+ D E + ++ +E A Q + + F FEVG+ V + GPF F G VK ++ E
Sbjct: 269 INDKEAKVLLRLAGIEEAPQVEKEKEIKIEFDFEVGDSVKIVSGPFEGFVGSVKEINPEH 328
Query: 151 SRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + V V IFGR TPV + ++VEK+
Sbjct: 329 NELKVSVTIFGRETPVTVHTSEVEKV 354
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M RWYI+Q + E A E++ ++ GL+H+++ + +P E V+
Sbjct: 1 MKKRWYILQTLAGYEATAKENLEAKIKAQGLEHVISRVLLPEEVVID 47
>gi|169830052|ref|YP_001700210.1| transcription antitermination protein [Lysinibacillus sphaericus
C3-41]
gi|168994540|gb|ACA42080.1| Transcription antitermination protein [Lysinibacillus sphaericus
C3-41]
Length = 114
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV 114
R+ FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E + ++ Q+ +
Sbjct: 3 RKVFPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQM--GM 60
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ V +GE V V +GPFA F G V+ +D EK ++ V V +FGR T
Sbjct: 61 TDKIVEVDISIGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVSVDMFGRET 110
>gi|24380295|ref|NP_722250.1| transcription antitermination protein NusG [Streptococcus mutans
UA159]
gi|290579732|ref|YP_003484124.1| putative transcription antitermination factor [Streptococcus mutans
NN2025]
gi|24378309|gb|AAN59556.1|AE015019_1 putative transcription antitermination factor [Streptococcus mutans
UA159]
gi|254996631|dbj|BAH87232.1| putative transcription antitermination factor [Streptococcus mutans
NN2025]
Length = 178
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 8 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEVEENRFPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V +
Sbjct: 68 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVD--IIDT 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T EL Q+ ++
Sbjct: 126 NIKEGDVVQIIDGAFVGQEGRV--VEIENNKVKIMINMFGAETQAELELYQIAEL 178
>gi|255022530|ref|ZP_05294516.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-208]
Length = 132
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKR- 119
Query: 118 VSSVFFEVGERVCV 131
+ FE+GE V V
Sbjct: 120 -AEADFEIGETVMV 132
>gi|22538197|ref|NP_689048.1| transcription antitermination protein NusG [Streptococcus
agalactiae 2603V/R]
gi|25012055|ref|NP_736450.1| transcription antitermination protein NusG [Streptococcus
agalactiae NEM316]
gi|76786867|ref|YP_330590.1| transcription antitermination protein NusG [Streptococcus
agalactiae A909]
gi|76797850|ref|ZP_00780114.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 18RS21]
gi|77406157|ref|ZP_00783229.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae H36B]
gi|77409156|ref|ZP_00785869.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae COH1]
gi|77411825|ref|ZP_00788159.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae CJB111]
gi|77412987|ref|ZP_00789190.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 515]
gi|22535108|gb|AAN00921.1|AE014285_3 transcription antitermination protein NusG [Streptococcus
agalactiae 2603V/R]
gi|24413598|emb|CAD47676.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561924|gb|ABA44508.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae A909]
gi|76586810|gb|EAO63304.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 18RS21]
gi|77160999|gb|EAO72107.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 515]
gi|77162102|gb|EAO73079.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae CJB111]
gi|77172240|gb|EAO75396.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae COH1]
gi|77175237|gb|EAO78034.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae H36B]
gi|319746037|gb|EFV98316.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae ATCC 13813]
Length = 179
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T EL QV ++
Sbjct: 127 NIKEGDVVQIIDGAFIGQEGRV--VEIENNKVKLMINMFGSETQAELELYQVAEL 179
>gi|313896787|ref|ZP_07830335.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 137 str. F0430]
gi|320530078|ref|ZP_08031148.1| transcription termination/antitermination factor NusG [Selenomonas
artemidis F0399]
gi|312974704|gb|EFR40171.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 137 str. F0430]
gi|320137511|gb|EFW29423.1| transcription termination/antitermination factor NusG [Selenomonas
artemidis F0399]
Length = 183
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSDMLFNVVVPVEDELEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSSVFF 123
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ V A +R
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGGAPKRRAK---V 134
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + G F + G V ++D +RV V++ TP+++ +QVE I
Sbjct: 135 AVGDNVRIVSGAFEDYAGKVISIDSAGARVQVDI----EGTPIDIEIDQVELI 183
>gi|329116684|ref|ZP_08245401.1| transcription termination/antitermination factor NusG
[Streptococcus parauberis NCFD 2020]
gi|326907089|gb|EGE54003.1| transcription termination/antitermination factor NusG
[Streptococcus parauberis NCFD 2020]
Length = 179
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLLRAQTYNMLDNILRVEIPTQTVNVEKNGQSKEIEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRAILLSMGQTVD--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRV--VEIENNKVKLMLNMFGSETIAEVELYQIAEL 179
>gi|215425876|ref|ZP_03423795.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T92]
gi|289749142|ref|ZP_06508520.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T92]
gi|289689729|gb|EFD57158.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T92]
Length = 205
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 18/157 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQ-------------- 109
+L++ +TD + +++TP V GF+G PS + D ++ ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
++RPV V +EVGE V V DGPFA+ +
Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATI 205
>gi|304437205|ref|ZP_07397166.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 149 str. 67H29BP]
gi|304369867|gb|EFM23531.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 149 str. 67H29BP]
Length = 183
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSSVFF 123
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ V A +R
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGGAPKRRAK---V 134
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + G F + G + ++D RV V+V T +++ +QVE+I
Sbjct: 135 DVGDTVRIISGAFEDYAGKITSIDTSSMRVQVDV----DGTQLDVEIDQVERI 183
>gi|149198910|ref|ZP_01875951.1| transcription antitermination protein NusG [Lentisphaera araneosa
HTCC2155]
gi|149137905|gb|EDM26317.1| transcription antitermination protein NusG [Lentisphaera araneosa
HTCC2155]
Length = 150
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY +Q S E KA + + R+ + + V E+ +P+E+V +VR+G+K+ R+F+PG
Sbjct: 6 QWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNRKFYPG 65
Query: 64 YVLI-------KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
Y+ + M + V+H +K+T +I FLG G+ P P++D EI+
Sbjct: 66 YLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG-GDKPVPLSDDEIQ 112
>gi|99034374|ref|ZP_01314395.1| hypothetical protein Wendoof_01000801 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 235
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTP---KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + P KV GFL G P + D EI + N + A +
Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDG 134
+E GE+V ++DG
Sbjct: 220 GYGYEKGEKVKINDG 234
>gi|207108836|ref|ZP_03242998.1| transcription antitermination protein NusG [Helicobacter pylori
HPKX_438_CA4C1]
Length = 110
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 75 VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDG 134
++H I+ P+V F+G + P+P+++++I HI+ ++ P +FFE GE V V +G
Sbjct: 1 MWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFFEQGEVVRVVEG 59
Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
PFA+F V+ D E ++ + V IFGR TP+E+ ++QVEK+
Sbjct: 60 PFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKL 101
>gi|23336710|ref|ZP_00121908.1| COG0250: Transcription antiterminator [Bifidobacterium longum
DJO10A]
Length = 128
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 76/127 (59%), Gaps = 12/127 (9%)
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------NQVEAAVQ 115
PGYVLI+ + +++T V GF+G ++P+P++ E+ +M ++AA
Sbjct: 1 PGYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGD 60
Query: 116 RPVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+P ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL
Sbjct: 61 KPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELG 120
Query: 170 YNQVEKI 176
++QV+K+
Sbjct: 121 FHQVQKL 127
>gi|157363336|ref|YP_001470103.1| NusG antitermination factor [Thermotoga lettingae TMO]
gi|157313940|gb|ABV33039.1| NusG antitermination factor [Thermotoga lettingae TMO]
Length = 354
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----QVEA 112
+RR FPGYV ++ +M D+ + ++ P +I F+ +G P + E I+ +
Sbjct: 229 KRRLFPGYVFVEMMMNDETWQFARNVPSIIDFVSSGGQPLEMKPREARVILRLAGLETYE 288
Query: 113 AVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+P+ + F +G+ V ++ GPF F G+VK +D EK + V V IFGR TPV + +
Sbjct: 289 EKMKPIKVELDFHIGDVVKITSGPFEDFAGVVKEIDAEKQELRVAVTIFGRETPVTVKIS 348
Query: 172 QVEKI 176
+VE+I
Sbjct: 349 EVERI 353
>gi|238927916|ref|ZP_04659676.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC
43531]
gi|238884249|gb|EEQ47887.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC
43531]
Length = 183
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ ++ +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ A P
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGA--EPKRRTKVN 135
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ G F + G + ++D S + V+V + G+ VE+ +QVE I
Sbjct: 136 VGDTVRITSGAFEDYAGKITSID--MSSMGVKVDVDGKSLDVEI--DQVELI 183
>gi|62257572|gb|AAX77724.1| unknown protein [synthetic construct]
Length = 149
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVFF 123
LI+A ++ ++ +K P+V+ +G+ P P++ +E++ I++ VE + P +
Sbjct: 27 LIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKSY 86
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 87 HVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 138
>gi|150020536|ref|YP_001305890.1| NusG antitermination factor [Thermosipho melanesiensis BI429]
gi|149793057|gb|ABR30505.1| NusG antitermination factor [Thermosipho melanesiensis BI429]
Length = 356
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQR 116
R+ FPGY+ ++ +M D+ +H ++ P +I F+ +G P P+ D E + ++ E + +
Sbjct: 230 RKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPLPLNDKEAKVLLRLSGEEEIPK 289
Query: 117 PVSS------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
S FE+G+ V + GPF F G VK ++ E + + V V IFGR TPV +
Sbjct: 290 EEKSKEVKIEFDFEIGDSVKIISGPFEGFVGTVKEINPEHNELKVTVTIFGRETPVTVHT 349
Query: 171 NQVEKIV 177
++VEK+V
Sbjct: 350 SEVEKVV 356
Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS 47
M RWYI+Q + E A ++ ++ GL+H+++ + +P E V+
Sbjct: 1 MKKRWYILQALAGYETAAKGNLEAKIKAQGLEHVISRVLLPEEIVID 47
>gi|313639747|gb|EFS04501.1| transcription antitermination protein NusG [Listeria seeligeri FSL
S4-171]
Length = 111
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
++ VMTD ++ +++TP V GF+G+ P+P+ E + I+ + +R + F
Sbjct: 1 MEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR--AEADF 58
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 59 EIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 111
>gi|222153827|ref|YP_002563004.1| transcription antitermination protein NusG [Streptococcus uberis
0140J]
gi|222114640|emb|CAR43677.1| transcription antitermination factor [Streptococcus uberis 0140J]
Length = 180
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVD--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRV--VEIENNKVKLMLNMFGSETLAEVELYQIAEL 179
>gi|313890368|ref|ZP_07823999.1| transcription termination/antitermination factor NusG
[Streptococcus pseudoporcinus SPIN 20026]
gi|313121211|gb|EFR44319.1| transcription termination/antitermination factor NusG
[Streptococcus pseudoporcinus SPIN 20026]
Length = 204
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 33 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNIEKNGQTKEVEENRFPGY 92
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + + V
Sbjct: 93 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTID--VFDT 150
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 151 NIKEGDVVQIIDGAFMGQEGRV--VEIENNKVKLTLNMFGSETIAEVELYQIAEL 203
>gi|54020638|ref|YP_116165.1| transcription antitermination protein NusG [Mycoplasma
hyopneumoniae 232]
gi|72080964|ref|YP_288022.1| transcription antitermination protein NusG [Mycoplasma
hyopneumoniae 7448]
gi|53987811|gb|AAV28012.1| transcription antitermination protein [Mycoplasma hyopneumoniae
232]
gi|71914088|gb|AAZ53999.1| transcription antitermination protein [Mycoplasma hyopneumoniae
7448]
gi|312601579|gb|ADQ90834.1| Transcription antitermination protein [Mycoplasma hyopneumoniae
168]
Length = 190
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60
+WY++ S+ E A+ + R+ L+ EIT +P + G K R
Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV--- 114
+ GY IK M DK + +++T V G +G+ G P+P++ + E + + + +
Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124
Query: 115 -QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
Q ++ +E+G+ V V+ GPF+ G + ++E K+ + VE+ +FGR TP Y
Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNETKTLITVELESVFGRRTPATFEYKN 184
Query: 173 VEKI 176
++K+
Sbjct: 185 LKKV 188
>gi|167957245|ref|ZP_02544319.1| hypothetical protein cdiviTM7_01145 [candidate division TM7
single-cell isolate TM7c]
Length = 113
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 65/103 (63%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY V YS E K +SI R++ + + + +P E+ + ++ G++ +R+ F
Sbjct: 9 TRQWYAVHTYSGYEDKVADSIRQRINAVDMADKIFAVMVPKEKQIEIKNGKRKIVDRKIF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
GY L++ +T++ ++ +++TP V GF+G+G P+PV+D+EI+
Sbjct: 69 QGYCLVEMKLTEETWYIVRNTPGVTGFVGSGTEPTPVSDAEIK 111
>gi|15674369|ref|NP_268543.1| transcription antitermination protein NusG [Streptococcus pyogenes
M1 GAS]
gi|19745330|ref|NP_606466.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS8232]
gi|21909663|ref|NP_663931.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS315]
gi|71909952|ref|YP_281502.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS5005]
gi|139473014|ref|YP_001127729.1| transcription antitermination protein NusG [Streptococcus pyogenes
str. Manfredo]
gi|57014085|sp|P68893|NUSG_STRP1 RecName: Full=Transcription antitermination protein nusG
gi|57014086|sp|P68894|NUSG_STRP3 RecName: Full=Transcription antitermination protein nusG
gi|57014087|sp|P68895|NUSG_STRP8 RecName: Full=Transcription antitermination protein nusG
gi|57015406|sp|Q5XE43|NUSG_STRP6 RecName: Full=Transcription antitermination protein nusG
gi|13621457|gb|AAK33264.1| putative transcription antitermination factor [Streptococcus
pyogenes M1 GAS]
gi|19747432|gb|AAL96965.1| putative transcription antitermination factor [Streptococcus
pyogenes MGAS8232]
gi|21903845|gb|AAM78734.1| putative transcription antitermination factor [Streptococcus
pyogenes MGAS315]
gi|56403933|dbj|BAD77788.1| hypothetical TRANSCRIPTION ANTITERMINATION PROTEIN [Streptococcus
dysgalactiae subsp. equisimilis]
gi|71852734|gb|AAZ50757.1| transcription antitermination protein [Streptococcus pyogenes
MGAS5005]
gi|134271260|emb|CAM29476.1| transcription antitermination factor [Streptococcus pyogenes str.
Manfredo]
Length = 179
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + + V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTID--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRV--VEIENNKVKLMLNMFGSETVAEVELYQIAEL 179
>gi|28895041|ref|NP_801391.1| transcription antitermination protein NusG [Streptococcus pyogenes
SSI-1]
gi|50913531|ref|YP_059503.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS10394]
gi|71902802|ref|YP_279605.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS6180]
gi|94987771|ref|YP_595872.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS9429]
gi|94989649|ref|YP_597749.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS10270]
gi|94991642|ref|YP_599741.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS2096]
gi|94993540|ref|YP_601638.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS10750]
gi|209558715|ref|YP_002285187.1| transcription antitermination protein NusG [Streptococcus pyogenes
NZ131]
gi|251783420|ref|YP_002997725.1| transcription antitermination protein NusG [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|306828165|ref|ZP_07461428.1| transcription termination/antitermination factor NusG
[Streptococcus pyogenes ATCC 10782]
gi|28810286|dbj|BAC63224.1| putative transcription antitermination factor [Streptococcus
pyogenes SSI-1]
gi|50902605|gb|AAT86320.1| Transcription antitermination protein [Streptococcus pyogenes
MGAS10394]
gi|71801897|gb|AAX71250.1| transcription antitermination protein [Streptococcus pyogenes
MGAS6180]
gi|94541279|gb|ABF31328.1| transcription antitermination protein [Streptococcus pyogenes
MGAS9429]
gi|94543157|gb|ABF33205.1| Transcription antitermination protein nusG [Streptococcus pyogenes
MGAS10270]
gi|94545150|gb|ABF35197.1| Transcription antitermination protein nusG [Streptococcus pyogenes
MGAS2096]
gi|94547048|gb|ABF37094.1| Transcription antitermination protein nusG [Streptococcus pyogenes
MGAS10750]
gi|209539916|gb|ACI60492.1| Transcription antitermination protein NusG [Streptococcus pyogenes
NZ131]
gi|242392052|dbj|BAH82511.1| transcription antitermination protein [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|304429702|gb|EFM32748.1| transcription termination/antitermination factor NusG
[Streptococcus pyogenes ATCC 10782]
gi|323128169|gb|ADX25466.1| transcription antitermination protein NusG [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 184
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 14 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFPGY 73
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + + V
Sbjct: 74 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTID--VFDT 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 132 NIKEGDVVQIIDGAFMGQEGRV--VEIENNKVKLMLNMFGSETVAEVELYQIAEL 184
>gi|225867754|ref|YP_002743702.1| transcription antitermination factor [Streptococcus equi subsp.
zooepidemicus]
gi|225869698|ref|YP_002745645.1| transcription antitermination factor [Streptococcus equi subsp.
equi 4047]
gi|225699102|emb|CAW92268.1| transcription antitermination factor [Streptococcus equi subsp.
equi 4047]
gi|225701030|emb|CAW97809.1| transcription antitermination factor [Streptococcus equi subsp.
zooepidemicus]
Length = 186
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 14 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFPGY 73
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 74 VLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVD--VFDT 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 132 NIKEGDMVQIIDGAFIGQEGRV--VEIENNKVKLMLNMFGSETLAEVELYQIAEL 184
>gi|20807217|ref|NP_622388.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
gi|20515721|gb|AAM23992.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
Length = 171
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ S CE+K G++ + ++ + E+ IP +++ KG + + FPG
Sbjct: 3 KWYVLFTKSGCEEKV-----GKIIKKIWENEI-EVLIPRRKIIERIKGEEREKIKLLFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K MT+ YH I K FL + P+ V + E+ I+N + VS
Sbjct: 57 YVFVKTEMTEAKYHEITSVLKQGVFLKEDKMPASVKEEEMRVILNLTGDSDLIDVSRGVK 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E G+RV + +GP + G ++ VD+ K R V + G V V+L VEKIV
Sbjct: 117 E-GDRVKIIEGPLLGYEGFIQKVDKRKKRAKVIFKVAGEVKSVDLGLEIVEKIV 169
>gi|269123300|ref|YP_003305877.1| NusG antitermination factor [Streptobacillus moniliformis DSM
12112]
gi|268314626|gb|ACZ01000.1| NusG antitermination factor [Streptobacillus moniliformis DSM
12112]
Length = 190
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS EKK + R+ L+ V I +P E++ +KG+ V R+ FP
Sbjct: 11 KWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFPS 70
Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
YVL++ + + + ++ I++T V GF+G G +P P+ + E+E I +++
Sbjct: 71 YVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSDPLPMDEKEVEEIFSKM 130
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + + +EVG+ V DG G V+++D ++ + + + R T + L
Sbjct: 131 --SNEDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTLGL 184
Query: 171 NQVEK 175
N+V K
Sbjct: 185 NEVTK 189
>gi|322412789|gb|EFY03697.1| transcription antitermination protein NusG [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 179
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI I+ + + V
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTID--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRV--VEIENNKVKLLLNMFGSETVAEVELYQIAEL 179
>gi|195977307|ref|YP_002122551.1| transcription antitermination protein NusG [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195974012|gb|ACG61538.1| transcription antitermination protein NusG [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 181
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G+ E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ VMTD + +++TP V GF+G+ N P+P+ + EI I+ + V V
Sbjct: 69 VLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVD--VFDT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V V+ E ++V + + +FG T E+ Q+ ++
Sbjct: 127 NIKEGDVVQIIDGAFIGQEGRV--VEIENNKVKLMLNMFGSETLAEVELYQIAEL 179
>gi|50364906|ref|YP_053331.1| transcription antitermination factor [Mesoplasma florum L1]
gi|50363462|gb|AAT75447.1| transcription antitermination factor [Mesoplasma florum L1]
Length = 209
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W++V + E+K + + ++ ++ V +I I S+ V + G++ E+ FPG
Sbjct: 19 QWFVVNSQTGHEEKVLNDLKNKIKAEKMEDQVFDIKI-SKGTVLTKTGKQ--KEKNLFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI--------EHIMNQVE- 111
Y+ I +M+++ + +++TP V GF+G+ G P P+T E+ E I+ ++E
Sbjct: 76 YLFINMIMSEESWFVVRNTPGVTGFIGSSGRGAKPFPLTVDEVIEMLIPKTEVIVEEIET 135
Query: 112 ------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A ++P+ + F VG+ V V +G A G V ++D EK V + +FGR T
Sbjct: 136 VDVHNEAVAKKPLFTAPFVVGDFVRVKEGINAGEEGEVSSMDFEKGVAVVLIEMFGRYTN 195
Query: 166 VELAYNQVEKI 176
+E+++ VE +
Sbjct: 196 LEISFENVEPV 206
>gi|309799005|ref|ZP_07693261.1| transcription antitermination protein NusG [Streptococcus infantis
SK1302]
gi|308117355|gb|EFO54775.1| transcription antitermination protein NusG [Streptococcus infantis
SK1302]
Length = 129
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 49 RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEH 105
+ G+K E FPGYVL++ VMTD+ + +++TP V GF+G+ N P+P+ + EI
Sbjct: 3 KNGKKKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRD 62
Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
I+ + VQ + EVG+ V + DG FA + G + +D K V + + +FG T
Sbjct: 63 ILVSMGQTVQE--FDIDVEVGQTVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTV 118
Query: 166 VELAYNQVEKI 176
E+ NQ+ ++
Sbjct: 119 AEVNLNQIAEL 129
>gi|206895164|ref|YP_002247282.1| transcription antitermination factor [Coprothermobacter
proteolyticus DSM 5265]
gi|206737781|gb|ACI16859.1| transcription antitermination factor [Coprothermobacter
proteolyticus DSM 5265]
Length = 182
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 14/182 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR--KGRKVNSERRFF 61
+WYIV E E+I R +G + ++++ +P E + R K R +R +
Sbjct: 3 KWYIVTTVHGKESAVAEAIKLRAENAG-NTAISDVLVPKEWRLEYRGKKPRPERVQRVIY 61
Query: 62 PGYVLI-------KAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAA 113
PGYV + K V+ + + I+ TP V GF+ T ++ P PV D+E+E ++ + +
Sbjct: 62 PGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQK---S 118
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
++ V + G+ V V DG G+V +VD EK +V V++ +FGR +L QV
Sbjct: 119 REQEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQV 178
Query: 174 EK 175
K
Sbjct: 179 RK 180
>gi|323704399|ref|ZP_08115978.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323536465|gb|EGB26237.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 204
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 4 RWYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+WY++ + E K+ +E + +L R + + IP ++ + +V +
Sbjct: 23 KWYVIYTRTGDELKVKRLIELLFCKLKRKSI-----RVLIPKRAIIERKGKNRVEKIKSL 77
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV IK M+ ++Y+ IK P+ + FL P+ V + EI+ I++ V + S+
Sbjct: 78 FPGYVFIKTCMSYELYNDIKRLPRFLKFLKDEAEPAEVREEEIKIILSLVGDSDIVGFST 137
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G +V + DGP F G+++ +D+ K RV V + + G V+L + VE++
Sbjct: 138 -GIKIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEEL 192
>gi|47458980|ref|YP_015842.1| transcription antitermination protein NusG [Mycoplasma mobile 163K]
gi|47458308|gb|AAT27631.1| transcription antitermination factor [Mycoplasma mobile 163K]
Length = 215
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 13/182 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI------PSERVVSVRKGRKVN-SE 57
WY + V S E+K +ES+ ++ G+ ++ EI I + + R G +
Sbjct: 29 WYTISVVSGKEEKVLESLNNKIKSLGMGEVIKEIKIFQTPYLTEKELEKKRNGENFKVKQ 88
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV 114
+ + GY+ +K +MTD V+ +++T V G +G+ G P+P+++ + +++ + +
Sbjct: 89 EKLYKGYIFMKMIMTDDVWFMVRNTENVTGLIGSSGKGTKPTPISERKFSKMLDFEKKKI 148
Query: 115 QRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ S + F++G V +GPF GI+ ++ K+ + + FGR TPVE +
Sbjct: 149 EEFGSGNYNSKFKIGLVAKVLEGPFKDEEGIILENNDIKALATIAIESFGRKTPVEFEHK 208
Query: 172 QV 173
+
Sbjct: 209 NL 210
>gi|304316482|ref|YP_003851627.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777984|gb|ADL68543.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 187
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ + E K I L S L+ + IP ++ + ++V + FPG
Sbjct: 6 KWYVIYTRTGDELKVKRLI--ELLFSKLNKKPIRVLIPKRAIIERKGKKRVEKIKFLFPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK M ++Y+ I P + FL P+ V D EI I++ V + S+
Sbjct: 64 YVFIKTNMCFEIYYEISKLPHFLKFLKDEMEPAEVRDDEIRIILSLVGDSDIVGFSTG-I 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G +V + DGP F G+++ +D+ K RV V + + G V+L + VEKI
Sbjct: 123 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEKI 175
>gi|301321402|gb|ADK70045.1| NusG family protein [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 213
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I +VS + G+ +S + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVS-KSGK--SSIKNKFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTD-----------SEIEHIMNQ 109
Y+ I +M++K + I++TP V GF+G+ G PSP+T EIE Q
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135
Query: 110 V--------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
EA ++ + + F+VG+ V V G + G VK++D K V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195
Query: 162 RVTPVELAYNQVEKI 176
R T +E+++ VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210
>gi|313665044|ref|YP_004046915.1| NusG family protein [Mycoplasma leachii PG50]
gi|312949338|gb|ADR23934.1| NusG family protein [Mycoplasma leachii PG50]
Length = 214
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I VS + G+ S + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVS-KSGK--TSIKNKFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQV---------- 110
Y+ I +M++K + I++TP V GF+G+ G PSP+T IE +N +
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLT---IEETLNMLVPNIEEIQQA 132
Query: 111 -------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
EA ++ + + F++G+ V V G + G VK++D K V +
Sbjct: 133 HEEEKEQETKQKNEAVAKKALFTADFKIGDVVKVKSGIHENEEGTVKDMDYSKGVAFVAI 192
Query: 158 VIFGRVTPVELAYNQVEKI 176
+FGR T +E+++ VE I
Sbjct: 193 EMFGRWTTLEVSFKNVEPI 211
>gi|297184776|gb|ADI20886.1| transcription antiterminator [uncultured gamma proteobacterium
EB080_L93H08]
Length = 85
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
PSP+ + E I+NQ E + P ++ ++ GE V V DGPF FNG+V+NV+ EK+++
Sbjct: 4 PSPIPEHEALRILNQAEDSKGMPRPTITYQPGEVVRVIDGPFNDFNGVVENVNYEKNKLS 63
Query: 155 VEVVIFGRVTPVELAYNQVEK 175
V V I GR TPV+L +NQVEK
Sbjct: 64 VAVQILGRPTPVDLNFNQVEK 84
>gi|42561478|ref|NP_975929.1| transcription antitermination protein NUSG [Mycoplasma mycoides
subsp. mycoides SC str. PG1]
gi|42492977|emb|CAE77571.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycoplasma mycoides
subsp. mycoides SC str. PG1]
Length = 213
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I +VS + + ++ FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSEKSSIKNK---FPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTD-----------SEIEHIMNQ 109
Y+ I +M++K + I++TP V GF+G+ G PSP+T EIE Q
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135
Query: 110 V--------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
EA ++ + + F+VG+ V V G + G VK++D K V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195
Query: 162 RVTPVELAYNQVEKI 176
R T +E+++ VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210
>gi|331703848|ref|YP_004400535.1| transcription antitermination protein NusG [Mycoplasma mycoides
subsp. capri LC str. 95010]
gi|256383992|gb|ACU78562.1| transcription antitermination protein nusg [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256384824|gb|ACU79393.1| transcription antitermination protein nusg [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296455387|gb|ADH21622.1| transcription antitermination protein nusG [synthetic Mycoplasma
mycoides JCVI-syn1.0]
gi|328802403|emb|CBW54558.1| Transcription antitermination protein NusG [Mycoplasma mycoides
subsp. capri LC str. 95010]
Length = 213
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I +VS + G+ +S + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVS-KSGK--SSIKNKFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM------------- 107
Y+ I +M++K + I++TP V GF+G+ G PSP+T E +++
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNMLVPNLEEIEQAHEQ 135
Query: 108 ------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ EA ++ + + F+VG+ V V G + G VK++D K V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195
Query: 162 RVTPVELAYNQVEKI 176
R T +E+++ VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210
>gi|83319581|ref|YP_424106.1| transcription antitermination protein NusG [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
gi|83283467|gb|ABC01399.1| transcription antitermination protein NusG [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
Length = 214
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I VS + G+ S + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVS-KSGKA--SIKNKFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQV---------- 110
Y+ I +M++K + I++TP V GF+G+ G PSP+T IE +N +
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLT---IEETLNMLVPNIEEIQQA 132
Query: 111 -------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
EA ++ + + F++G+ V V G + G VK++D K V +
Sbjct: 133 HEEEKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAI 192
Query: 158 VIFGRVTPVELAYNQVEKI 176
+FGR T +E+++ VE I
Sbjct: 193 EMFGRWTTLEVSFKNVEPI 211
>gi|71893985|ref|YP_279431.1| transcription antitermination protein NusG [Mycoplasma
hyopneumoniae J]
gi|71852112|gb|AAZ44720.1| transcription antitermination protein [Mycoplasma hyopneumoniae J]
Length = 190
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60
+WY++ S+ E A+ + R+ L+ EIT +P + G K R
Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV--- 114
+ GY IK M DK + +++T V G +G+ G P+P++ + E + + + +
Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124
Query: 115 -QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
Q ++ +E+G+ V V+ GPF+ G + ++ K+ + VE+ +FGR TP Y
Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEYKN 184
Query: 173 VEKI 176
++K+
Sbjct: 185 LKKV 188
>gi|229003111|ref|ZP_04160959.1| Transcription antitermination protein nusG [Bacillus mycoides
Rock1-4]
gi|228758139|gb|EEM07336.1| Transcription antitermination protein nusG [Bacillus mycoides
Rock1-4]
Length = 107
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 71 MTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
MTD ++ +++TP V GF+G+ PSP+ + E+ IM + + V FE+ E
Sbjct: 1 MTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNEVVDFDFELHE 58
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 59 TVRVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 107
>gi|218458943|ref|ZP_03499034.1| transcription antitermination protein NusG [Rhizobium etli Kim 5]
Length = 51
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V VSDGPFASFNG V++V EE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 1 GEQVRVSDGPFASFNGTVQDVAEERSRLKVEVSIFGRATPVELEYAQVEKV 51
>gi|13477026|ref|NP_108596.1| transcription antitermination factor nusG [Mesorhizobium loti
MAFF303099]
gi|14027789|dbj|BAB54382.1| transcription antitermination factor; NusG [Mesorhizobium loti
MAFF303099]
Length = 182
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR---- 59
RWY+++V E +A ++ L + ++ ++ ++R +GR+ +
Sbjct: 13 RWYVLRV----EDRADIAVDKLLGEANVERVMLHTECEAKR-----RGRRKHQSLEPVRV 63
Query: 60 -FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-P 117
FPGY+ +K V + ++ V+G +G + PSPV++ EI ++E +
Sbjct: 64 PSFPGYIFVKVVSCAATWAGLRTVSGVLGPIGGCDGPSPVSEQEILKFQARIENDPEAIA 123
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + + G++V + GPFA F +V + +K +VHVEV IFGR TP+ A +V K+
Sbjct: 124 VLTNALKAGDKVSIDSGPFAGFEAVVLMLG-DKHKVHVEVDIFGRKTPIGFALAEVTKL 181
>gi|297520794|ref|ZP_06939180.1| transcription antitermination protein NusG [Escherichia coli OP50]
Length = 66
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 44/60 (73%)
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+P FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 6 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 65
>gi|295789221|pdb|2KVQ|G Chain G, Solution Structure Of Nuse:nusg-Ctd Complex
Length = 63
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A+ RP FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++
Sbjct: 1 GAMGRP--KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 58
Query: 172 QVEK 175
QVEK
Sbjct: 59 QVEK 62
>gi|294155399|ref|YP_003559783.1| transcription anti-termination factor NusG [Mycoplasma crocodyli
MP145]
gi|291599945|gb|ADE19441.1| transcription anti-termination factor NusG [Mycoplasma crocodyli
MP145]
Length = 198
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRL----SRSGLDHLVTE---ITIPSERVVSVRKG-RKVNS 56
WY+V S E + VE++ R+ D TE I + V++ ++ +K+
Sbjct: 6 WYMVSTVSGKEDRVVEALKNRIIAEEVSHSFDSTATENGAFKIFKKPVLTPKEAEKKLKG 65
Query: 57 ER------RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
E +PGY+ IK MTD+ + I++T V G +G+ G P+PV + EI +
Sbjct: 66 EEYKIKWANMYPGYIFIKMDMTDEAWFVIRNTQFVTGLIGSSGKGAKPTPVPEKEIRKSL 125
Query: 108 NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
Q + A++ + + F+ E V V DGP+ G + ++D K +E+ FG+
Sbjct: 126 IQEDKALEDYKTGKYLVEFKADEIVEVIDGPYQGEKGPILSIDHNKQTAIIELESFGKKV 185
Query: 165 PVELAYN 171
PVEL Y
Sbjct: 186 PVELEYK 192
>gi|293363571|ref|ZP_06610327.1| NusG family protein [Mycoplasma alligatoris A21JP2]
gi|292552920|gb|EFF41674.1| NusG family protein [Mycoplasma alligatoris A21JP2]
Length = 198
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-------ERVVSVRKGRKVNSE 57
WY+V S E K VE++ R+ ++H + + V+S ++ K
Sbjct: 6 WYMVSTVSGKEDKVVEALRNRIIAEQVNHSFDSTATDAGAFKVFRKPVLSPKEAEKKQKG 65
Query: 58 RRF-------FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ +PGY+ IK MTD+ + I++T V G +G+ G P+PV + EI+ +
Sbjct: 66 EDYKVKWVNMYPGYIFIKMDMTDEAWFVIRNTQYVTGLIGSSGKGAKPTPVQNKEIKKSL 125
Query: 108 NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
Q + A+ S + F+ GE V V DGP+ G + +D +K V + FG+
Sbjct: 126 IQEQKALDDFESGKYLVTFKDGEIVEVIDGPYQGEKGPISQIDHDKQTAVVMIESFGKQV 185
Query: 165 PVELAY 170
VE+ Y
Sbjct: 186 SVEIEY 191
>gi|47570852|ref|ZP_00241389.1| transcription termination/antitermination factor nusG [Bacillus
cereus G9241]
gi|47552480|gb|EAL10994.1| transcription termination/antitermination factor nusG [Bacillus
cereus G9241]
Length = 140
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
E K ++ R+ G+ + + +P E V ++ G++ +R+ FPGYVL++ +MTD
Sbjct: 1 ENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDD 60
Query: 75 VYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
++ +++TP V GF+ G+G PSP+ + E+ IM + + V FE+ E V V
Sbjct: 61 SWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNEVVDFDFELHETVRV 118
Query: 132 SDGPFASFNGIVKNVDEEKSRV 153
++GPFA + G ++ +D EK +V
Sbjct: 119 NEGPFADYTGAIEEIDVEKKKV 140
>gi|160901844|ref|YP_001567425.1| NusG antitermination factor [Petrotoga mobilis SJ95]
gi|160359488|gb|ABX31102.1| NusG antitermination factor [Petrotoga mobilis SJ95]
Length = 354
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRP 117
FPGYV ++ + + + + P V L G P + +E+ ++ + EA +R
Sbjct: 232 LFPGYVFVEMMYIKETEELVSNLPYVSTILNIGGKPVKLNKNEVRFVLRVMGEEAYQKRQ 291
Query: 118 VSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V V FE+GE V + +GPF F G +K+ D EK V V V +FGR T V L+ ++EK
Sbjct: 292 VKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFGRETTVTLSLGEIEK 351
Query: 176 IV 177
I+
Sbjct: 352 II 353
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP 41
M WY++QVYS E K E++ R+ G + +I IP
Sbjct: 1 MRKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIP 41
>gi|238810255|dbj|BAH70045.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 205
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK--------GRKVN 55
+WY++ S E K VE++ R+ ++ P +K ++ N
Sbjct: 10 QWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKN 69
Query: 56 SER------RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHI 106
E + GY+ I MTD+ + +++T V G +G+ G P+PV+ +I+
Sbjct: 70 GEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKS 129
Query: 107 MNQ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ ++ + V+ F++GE V + DGPF G V E +V VE+ G+
Sbjct: 130 FKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKK 189
Query: 164 TPVELAYNQV 173
TP + Y ++
Sbjct: 190 TPADFEYKEI 199
>gi|319777680|ref|YP_004137331.1| transcription antitermination protein nusg [Mycoplasma fermentans
M64]
gi|318038755|gb|ADV34954.1| Transcription antitermination protein nusG [Mycoplasma fermentans
M64]
Length = 201
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 20/191 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK--------GRKVN 55
+WY++ S E K VE++ R+ ++ P +K ++ N
Sbjct: 6 QWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKN 65
Query: 56 SER------RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHI 106
E + GY+ I MTD+ + +++T V G +G+ G P+PV+ +I+
Sbjct: 66 GEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKS 125
Query: 107 MNQ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ ++ + V+ F++GE V + DGPF G V E +V VE+ G+
Sbjct: 126 FKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKK 185
Query: 164 TPVELAYNQVE 174
TP + Y +++
Sbjct: 186 TPADFEYKEIK 196
>gi|326391515|ref|ZP_08213048.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325992444|gb|EGD50903.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 180
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ S E K + I S ++ IP +++ KG+ V R FPG
Sbjct: 3 KWYVIFTRSGYENKVRDII-----ESCFKQEEVKLLIPKRKIIEREKGQPVERIRLLFPG 57
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + A M+D +Y+ + D K FL G+ P+ V + E++ I++ + + +S
Sbjct: 58 YVFVNAEMSDDLYYKMSDVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIM 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V + I G + V+LA +E +
Sbjct: 118 E-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIENV 169
>gi|168031471|ref|XP_001768244.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680422|gb|EDQ66858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 719
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSR--SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V E +A E + + ++ G+ + V +IPS R ++ GR +S R +P
Sbjct: 119 WYMVSTPKKAEHEAAEQLHIQFAQMFPGMKYEVLTPSIPSFR--KLKSGRYSDSRVRLYP 176
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---------PSPVTDSEIEHIMNQVEAA 113
G +LI+ VM VY+ I+ ++ F GT PS V+ EIE + ++E A
Sbjct: 177 GCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEA 236
Query: 114 VQR-------------------------------PVSSVFFEVGERVCVSDGPFASFNGI 142
P E G + ++ GPF + GI
Sbjct: 237 EAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGI 296
Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V VD E V + VVIFG+ T EL ++
Sbjct: 297 VNYVDHENETVQLSVVIFGQSTDAELRIDE 326
>gi|163783795|ref|ZP_02178779.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
gi|159880948|gb|EDP74468.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
Length = 101
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
K+ I+ TP + + G P+ + E+ I+ QV+ V+ V FE G++V V +
Sbjct: 1 KLLRAIEKTPHIYKPVLVGGKVVPLKEEEVNRILEQVQKGVK--TRKVEFEKGDQVRVIE 58
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GPF +F G V+ V E+ ++ V + IFGR+TPVEL + QVEKI
Sbjct: 59 GPFMNFTGTVEEVHPEREKLTVLISIFGRLTPVELDFTQVEKI 101
>gi|307321395|ref|ZP_07600793.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
gi|306892940|gb|EFN23728.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
Length = 221
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERRFFPG 63
W ++Q + EK VE+I L ++G++ LV P R R+GR + ER G
Sbjct: 55 WIVLQTMTGREK-IVENI---LGQAGVEALVPTKKAPDVR----RRGRIIEGQERPVMRG 106
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE----IEHIMNQVEAAVQRPVS 119
YV++ AV++ + ++ V+G +G E P D++ I+ + + AA + V
Sbjct: 107 YVMVHAVLSPAALNGLRRVEHVVGIVGGAERPW-CADAQSVNMIKALSKKANAADEEKV- 164
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ FE+GERV +GPF G+V VD EK VEV+I G PV
Sbjct: 165 -LPFELGERVVFREGPFYLLGGVVIAVDGEKFDARVEVMILGGHVPV 210
>gi|304373041|ref|YP_003856250.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1]
gi|304309232|gb|ADM21712.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1]
gi|330723344|gb|AEC45714.1| transcription antitermination protein NusG [Mycoplasma hyorhinis
MCLD]
Length = 198
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI------TIPSERVVSVRKGRK-VNS 56
+WY++ SN E A+E + R+ GL+ EI TI + KG K V
Sbjct: 5 KWYMISTISNKEDTAIELLKNRIKSEGLEQYFKEIKKFEITTISDKEYEKKLKGEKYVEK 64
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHI-MNQVEA 112
+ + GY+ I M D V+ +++T + G +G+ G P+PV++ +I + Q E
Sbjct: 65 KENLYKGYIFINMQMNDAVWFIVRNTQYITGLIGSSGKGTKPTPVSEKQIRKMEEKQREK 124
Query: 113 AVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V+ + F+VG V + GPF G + +VD + V++ + GR T L
Sbjct: 125 LVEYAKFGIINSPFKVGTVVEIIQGPFIGEIGKISSVDLVNASSAVQLEVLGRKTET-LI 183
Query: 170 YNQVEKIV 177
N+ KI+
Sbjct: 184 ENKNLKII 191
>gi|328953460|ref|YP_004370794.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
gi|328453784|gb|AEB09613.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
Length = 190
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY+V Y+ C + + RL RSG + + I +PS R R++ F
Sbjct: 26 TASWYVV--YTACHHEF--RVEQRLKRSGRETFLPWIAVPSRRC-----DRRLQINVPLF 76
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
PGY+ I+ +T VYH I P V L + V IE I + A RP
Sbjct: 77 PGYLFIREQLTPVVYHEIVRLPGVARILRCNGGYATVCPEVIESIRQSL--ASLRPCGPH 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F + G++V V +GP GI+K + K R+ + V +F R VEL + VE
Sbjct: 135 AFVQRGKQVRVVEGPLRGIVGIIKELKHRKRRLVITVELFKRSMAVELDDDAVE 188
>gi|159162766|pdb|1NZ8|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
N-Terminal (Ngn) Domain From Thermus Thermophilus
Length = 119
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY V E+KA ++ R+ GL + ++ IP+E VV +R+ G+K ++ FPG
Sbjct: 4 WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPG 63
Query: 64 YVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
Y+ I+ + D + + ++ TP + GF+G G P P++ E+ HI+
Sbjct: 64 YLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILE 113
>gi|291319980|ref|YP_003515238.1| transcription antitermination protein NusG [Mycoplasma agalactiae]
gi|290752309|emb|CBH40280.1| Transcription antitermination protein (NusG) [Mycoplasma
agalactiae]
Length = 199
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-------ITIPSERVVSVRKGRKVN-- 55
WY++ S E K VES+ R+ ++ + I + V++ ++ K
Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65
Query: 56 -----SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ GY+ I MTDK + +++T V G +G+ G P+PVT EI+
Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125
Query: 108 NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ + ++ S F VGE V + DGPF G V +E +V VEV FG+
Sbjct: 126 EKEKQLIEDFNSGKIIDKFTVGEIVEIIDGPFKGTLGKVLEANESIHKVTVEVEHFGKKV 185
Query: 165 PVELAYNQVE 174
P + Y+ VE
Sbjct: 186 PTDFDYSVVE 195
>gi|226941728|ref|YP_002796802.1| RfaH [Laribacter hongkongensis HLHK9]
gi|226716655|gb|ACO75793.1| RfaH [Laribacter hongkongensis HLHK9]
Length = 172
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V E+ A++++ + + L L TE +R+GR V SE FP Y
Sbjct: 11 WYLVHTKPRQEQCALQNLQQQGYQCYLPMLATE---------KLRQGRLVVSEEALFPRY 61
Query: 65 VLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ + +DK + I+ T V + G P+ + D IE + +AA P
Sbjct: 62 LFIRLGLGQSDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGH-DAARANP--EPL 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F GERV ++DGPFA GI + D E SRV V + R +A + K+V
Sbjct: 119 FRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTRPVVARVAPGSLRKVV 172
>gi|220924919|ref|YP_002500221.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219949526|gb|ACL59918.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 230
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++V +C L+ + L SE VV VR GR + + F
Sbjct: 58 RWHLV----DCRAGKARQFADALAAGAIPALRL-----SEEVVRVRSGRPIRTRMPLFGR 108
Query: 64 YVLIKAVMTDKVYHTIKDT--PKVIGFLGTGENPSPVTDSEIEH----IMNQVEAAVQRP 117
+ + + H ++D ++ G E V E++ + V A +R
Sbjct: 109 LLFVGLDPHSEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLGGDVPPAERRT 168
Query: 118 VSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+++ FE+GE V V+DGPFASF+G+V+ +D E + V V IFGR TPV L QVE
Sbjct: 169 GAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLEPTQVE 228
Query: 175 KI 176
K+
Sbjct: 229 KL 230
>gi|228931282|ref|ZP_04094212.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|229188095|ref|ZP_04315179.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|228595336|gb|EEK53072.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|228828377|gb|EEM74082.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 179
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 6/168 (3%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
I+ Y+ C + E + L L+ + + +P + V RKG R+ PGY+L
Sbjct: 3 ILSWYALCVRSGYEDLVESLILRDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGYIL 62
Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-----DSEIEHIMNQVEAAVQRPVSSV 121
I M K+Y+ +K+ P FL ++ + D EI I+ + S
Sbjct: 63 INTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECSEA 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+FE G +V V GP GI++ +D+ K R + + G +++
Sbjct: 123 YFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVG 169
>gi|168700805|ref|ZP_02733082.1| transcription antitermination protein NusG [Gemmata obscuriglobus
UQM 2246]
Length = 223
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG------------ 51
+WY ++V S E +I +++ GL+ + +I +P E+V+ +
Sbjct: 25 KWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTGEYNT 84
Query: 52 --RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS------PVTDSEI 103
RKV + + F GY+ + D++ + I++T V FL P+ P++D+E+
Sbjct: 85 VERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMSDAEV 144
Query: 104 EHIMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNV-----DEEKSRVHVEV 157
+ ++ + + P V FE G+RV + +G F G VK+V + +V V V
Sbjct: 145 KQMLGEKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKVIVTV 204
Query: 158 VIFGRVTPVELAYNQVEK 175
+GR VEL Y QV K
Sbjct: 205 TFWGRPLDVELEYWQVTK 222
>gi|148377312|ref|YP_001256188.1| transcription antitermination protein NusG [Mycoplasma agalactiae
PG2]
gi|148291358|emb|CAL58741.1| Transcription antitermination protein (NusG) [Mycoplasma agalactiae
PG2]
Length = 199
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-------ITIPSERVVSVRKGRKVN-- 55
WY++ S E K VES+ R+ ++ + I + V++ ++ K
Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65
Query: 56 -----SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ GY+ I MTDK + +++T V G +G+ G P+PVT EI+
Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125
Query: 108 NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ + ++ + F VGE V + DGPF G V +E +V VEV FG+
Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185
Query: 165 PVELAYNQVE 174
P + Y+ VE
Sbjct: 186 PTDFDYSVVE 195
>gi|326392210|ref|ZP_08213671.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325991749|gb|EGD50280.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 102
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 70 VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V V + V
Sbjct: 2 VMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDLNVKDTV 55
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GPF +F G+V+ + E+ + V + +FGR TPVE Q+++I
Sbjct: 56 RVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQRI 102
>gi|307265355|ref|ZP_07546912.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|306919639|gb|EFN49856.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
Length = 180
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ S E K + I + + L IP +++ KG+ V + FPG
Sbjct: 3 KWYVIFTRSGYENKVKDIIENCFKQEEVKLL-----IPKRKIIERVKGQPVEKIKLLFPG 57
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + A M+D +Y+ I + K FL G+ P+ V + E++ I+ + + +S
Sbjct: 58 YVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILALTKNSDLIDLSKGIM 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V + I G + V+LA +E +
Sbjct: 118 E-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIENV 169
>gi|258517294|ref|YP_003193516.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
gi|257780999|gb|ACV64893.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 164
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ + E E + R+ + V +P +V R+G ER FPGY
Sbjct: 3 WYVIHCLTGHE----EDVRSRVKEKDIARAV----VPRRLMVERRQGGWQYVERVVFPGY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++A MT Y+ +++ P VI LGT P P+ +E+ + +S VF +
Sbjct: 55 VFVQAHMTPAAYYAMRNLPGVIRVLGT-SRPVPLMGNEVTLFLKLCRDGDPLGLSEVFVK 113
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G V V GP G + +D + R V + + G VELA + ++K
Sbjct: 114 -GGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKK 163
>gi|303238542|ref|ZP_07325076.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
gi|302593940|gb|EFL63654.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
Length = 176
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V + E VE+ S H + +P ++ VRKG+ + FFPGY
Sbjct: 3 WYALHVKTGAEND-VENFLHYNFESNECHSI----VPKRKLTEVRKGKCYEVIKIFFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
VLI M+ +Y+ I+ P V L GE S ++D EI ++ ++ + S +F
Sbjct: 58 VLINLDMSTDIYYIIRKIPNVYTVLKQDGEYYSRISDEEINPLLKLLKDSDLIDYSKIFI 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E +V V+ GP G+++ VD+ + R V + G V+L
Sbjct: 118 E-NSKVSVNSGPLLGLEGLIRKVDKRRGRAKVALNFMGSEKTVDLG 162
>gi|313678177|ref|YP_004055917.1| transcription antitermination protein NusG [Mycoplasma bovis PG45]
gi|312950368|gb|ADR24963.1| putative transcription antitermination protein NusG [Mycoplasma
bovis PG45]
Length = 199
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-------ITIPSERVVSVRKGRKVN-- 55
WY++ S E K VES+ R+ ++ + I + V++ ++ K
Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEDCFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65
Query: 56 -----SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ GY+ I MTDK + +++T V G +G+ G P+PVT EI+
Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125
Query: 108 NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ + ++ S F VGE V + +GPF G V +E +V VEV FG+
Sbjct: 126 EKEKQLIEDFNSGKNIDKFTVGEIVEIIEGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185
Query: 165 PVELAYNQVE 174
P + Y+ VE
Sbjct: 186 PTDFDYSVVE 195
>gi|289577938|ref|YP_003476565.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
gi|297544211|ref|YP_003676513.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289527651|gb|ADD02003.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
gi|296841986|gb|ADH60502.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 179
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ E K + I ++ +P +++ KG+ V + FPG
Sbjct: 3 KWYVIFTRGGFENKVKDIIQNCFKEE------VKLLVPKRKIIERVKGQPVEKIKLLFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + A M+D++Y+ + + K FL G+ P+ V + E++ I++ ++ + VS
Sbjct: 57 YVFVNAEMSDELYYKMSEVLKRGVFLKEGKRPAFVREEEMKIILSLIKNSDLIDVSKGIM 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
E GERV + +GP + G++K +D+ K R V + I G + V+LA +E
Sbjct: 117 E-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 166
>gi|328478515|gb|EGF48215.1| transcription termination/antitermination factor NusG
[Lactobacillus rhamnosus MTCC 5462]
Length = 114
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K ++ R S +D + + +P E + G++ ++ FPG
Sbjct: 11 RWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI 103
YVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+
Sbjct: 71 YVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEV 113
>gi|308190287|ref|YP_003923218.1| transcription antitermination factor [Mycoplasma fermentans JER]
gi|307625029|gb|ADN69334.1| transcription antitermination factor [Mycoplasma fermentans JER]
Length = 193
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQ---VEAA 113
+ GY+ I MTD+ + +++T V G +G+ G P+PV+ +I+ + ++
Sbjct: 68 MYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKSFKKEIKLQED 127
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ V+ F++GE V + DGPF G V E +V VE+ G+ TP + Y ++
Sbjct: 128 FDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKKTPADFEYKEI 187
Query: 174 E 174
+
Sbjct: 188 K 188
>gi|254490679|ref|ZP_05103864.1| KOW motif domain protein [Methylophaga thiooxidans DMS010]
gi|224464135|gb|EEF80399.1| KOW motif domain protein [Methylophaga thiooxydans DMS010]
Length = 56
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V+DGPF F G+V+ V+ EKS++ VEVVIFGR TPVEL ++QV K
Sbjct: 1 MLFEPGEVVRVTDGPFNDFTGVVEEVNYEKSKLRVEVVIFGRSTPVELEFSQVAK 55
>gi|269115174|ref|YP_003302937.1| transcription antitermination protein [Mycoplasma hominis]
gi|110810384|gb|AAZ52671.2| transcription antitermination protein [Mycoplasma hominis ATCC
23114]
gi|268322799|emb|CAX37534.1| Transcription antitermination protein [Mycoplasma hominis ATCC
23114]
Length = 195
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF--- 60
+WY++ S E+ +ES+ +++ +D +I + E +S ++ K F
Sbjct: 9 KWYMISTVSGKEENVIESLKNKIAAQRMDEYFKDIRMFKEPHLSNKELEKKQRNEEFTVK 68
Query: 61 ----FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAA 113
+ GY+ + MTD ++ +++T V G +G+ N P+ ++D + + ++++ EA
Sbjct: 69 FVNMYKGYIFLNMAMTDDTWYLVRNTQYVTGLIGSSGNKTKPTQISDKKFQLMIDK-EAM 127
Query: 114 VQRPVSS----VFFEVGERVCVSDGPFASFNG-IVKNVD-EEKSRVHVEVVIFGRVTPVE 167
+ + F+ G V +S G F G I+KN D +K+ V++E FGR P E
Sbjct: 128 LLAKFKAGDIETAFKEGALVKISSGIFKDEVGEIIKNNDITQKAFVNIEQ--FGRKVPTE 185
Query: 168 LAYNQVE 174
Y +E
Sbjct: 186 FDYADLE 192
>gi|193216502|ref|YP_001999744.1| transcription antitermination protein NusG [Mycoplasma arthritidis
158L3-1]
gi|193001825|gb|ACF07040.1| transcription antitermination protein [Mycoplasma arthritidis
158L3-1]
Length = 197
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF--- 60
+WY++ S E VES+ ++S +D EI I +S ++ K + +
Sbjct: 11 KWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKVK 70
Query: 61 ----FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAA 113
+ GY+ I +MTD+ ++ +++T V G +G+ G P+P++ E ++ + A
Sbjct: 71 YLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIAL 130
Query: 114 VQR----PVSSVFFEVGERVCVSDGPFASFNG-IVKNVD-EEKSRVHVEVVIFGRVTPVE 167
++ + +VF E G V ++ G F G IVKN D +K+ V++E +GR P E
Sbjct: 131 AEKFAAGDIETVFKE-GVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQ--YGRKVPTE 187
Query: 168 LAYNQVE 174
+ + +E
Sbjct: 188 IDHADLE 194
>gi|154686640|ref|YP_001421801.1| putative transcription antiterminator [Bacillus amyloliquefaciens
FZB42]
gi|154352491|gb|ABS74570.1| putative transcription antiterminator [Bacillus amyloliquefaciens
FZB42]
Length = 176
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY + V S E E++ + R D IP ++V + G K + ++ FPG
Sbjct: 2 KWYALFVESGKE----ETVQ-KFLRLQFDEQALYSIIPKKKVTERKAGIKYEALKKMFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP--------VTDSEIEHIMNQVEAAVQ 115
YVL K MT++ +H IK+ P + G S + D EI I+ +
Sbjct: 57 YVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGDT 116
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S V+ E +V V+ GP GI+K +D+ K R + + G
Sbjct: 117 VDYSKVYIE-NSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMG 161
>gi|167037961|ref|YP_001665539.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040859|ref|YP_001663844.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
gi|320116378|ref|YP_004186537.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166855099|gb|ABY93508.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
gi|166856795|gb|ABY95203.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929469|gb|ADV80154.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 179
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ S E K + I ++ IP +++ KG+ V + FPG
Sbjct: 3 KWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S
Sbjct: 57 YVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIM 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V I G + V+LA +E +
Sbjct: 117 E-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVMENV 168
>gi|300914898|ref|ZP_07132214.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|307723869|ref|YP_003903620.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
gi|300889833|gb|EFK84979.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|307580930|gb|ADN54329.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
Length = 184
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ S E K + I ++ IP +++ KG+ V + FPG
Sbjct: 8 KWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFPG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S
Sbjct: 62 YVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIM 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V I G + V+LA +E +
Sbjct: 122 E-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVMENV 173
>gi|256751800|ref|ZP_05492673.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|256749328|gb|EEU62359.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
Length = 179
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ S E K + I ++ IP +++ KG+ V + FPG
Sbjct: 3 KWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S
Sbjct: 57 YVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIM 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V I G + V+LA +E +
Sbjct: 117 E-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVMENV 168
>gi|239628060|ref|ZP_04671091.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518206|gb|EEQ58072.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
Length = 186
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY VQV + E+ ++ LS+ +D ++ E IP + +G + FP
Sbjct: 3 RWYAVQVRTGREEAVLQ-----LSKKMIDGSVLKECFIPYYERMKRYQGEWHKEQYILFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ + D+++ +K P + LG G P+ + E + I+ ++ + S
Sbjct: 58 GYIFLVTEQVDELFWELKKVPGLTKILGDGMEFVPIKEEE-KVILQKMGGSDHIAEMSKG 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +G+ V V GP G +K +D K +E+ +FGR T V L V K+
Sbjct: 117 YVIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMKL 170
>gi|255018875|ref|ZP_05291001.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL F2-515]
Length = 78
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
P+ E + I+ + +R + FE+GE V V +GPFA F+G V +D +K + V
Sbjct: 1 PLLPEEADRILKSMGMVEKRAEAD--FEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVM 58
Query: 157 VVIFGRVTPVELAYNQVEKI 176
V +FGR TPVE+ +NQ+EK+
Sbjct: 59 VNMFGRETPVEVDFNQIEKL 78
>gi|226313581|ref|YP_002773475.1| transcription antitermination protein [Brevibacillus brevis NBRC
100599]
gi|226096529|dbj|BAH44971.1| putative transcription antitermination protein [Brevibacillus
brevis NBRC 100599]
Length = 177
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY + V S E+ + + + L +V + +P ++ G N + FFPG
Sbjct: 2 KWYAIFVESGKEEVVQKYLRLYFNEQSLKSIVPKRLVPEKK-----SGIVYNVLKNFFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--------NPSPVTDSEIEHIMNQVEAAVQ 115
YVLI+ MT++++H IK P+ + + G S + + EI I+ +
Sbjct: 57 YVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGEV 116
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S V+ E +V V GP GI+K VD+ K+R + + G
Sbjct: 117 VDYSKVYLE-NSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMG 161
>gi|257063934|ref|YP_003143606.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476]
gi|256791587|gb|ACV22257.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476]
Length = 169
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV +N E + + I + + ++ E +P V+ +G+ + PGY
Sbjct: 2 WYVIQVGTNQEDRVIGLIRSFVGKD----VLKEAFVPQVEVMRRSRGQWQKRKELLLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + A +K+ + D P LG + +P+ D EI+ + + A R + +
Sbjct: 58 VFVIATDPEKLNQALIDVPAFTRLLGNDVSFTPLLDDEIKFL--EAFTAPDRRIVRMSKG 115
Query: 125 V--GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V G+++ +++GP G++K +D K ++E+ + GR +++ V K
Sbjct: 116 VIEGDQIIINEGPLRGQTGLIKRIDRHKRLAYLEMTVMGRKKMIKVGLEIVSK 168
>gi|171920742|ref|ZP_02931951.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|195867483|ref|ZP_03079487.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|209554214|ref|YP_002285036.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|171903489|gb|EDT49778.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|195660959|gb|EDX54212.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|209541715|gb|ACI59944.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
Length = 257
Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 58/228 (25%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR--------KGRK 53
T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ + K
Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82
Query: 54 VNSERRF---------------------FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-T 91
+ ++ F GY+ +KA MTD+++ I++T V G +G +
Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142
Query: 92 GEN--PSPVTDSEIEHIMNQVEAAVQRPVSSV----------------------FFEVGE 127
G+N P PV + +I ++ +A +R + S+ FEV +
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDA--KRALVSLDEQTNSQQNVVVVESHETEDLPNFEVDQ 200
Query: 128 RV-CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+V V+D F I K +D+ K VE FGR+ ++L +N ++
Sbjct: 201 QVKIVADTFFGEIARIAK-IDQNKKVATVEFEFFGRINTLDLNFNDIQ 247
>gi|220924151|ref|YP_002499453.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219948758|gb|ACL59150.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 230
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V+DGPFASFNG+V+ +D + + V V IFGR TPV L +QVE++
Sbjct: 173 FEVGEPVRVTDGPFASFNGLVEEIDNLEHTLKVAVSIFGRSTPVTLEPSQVERL 226
>gi|257456059|ref|ZP_05621262.1| transcription antitermination protein, NusG family [Treponema
vincentii ATCC 35580]
gi|257446517|gb|EEV21557.1| transcription antitermination protein, NusG family [Treponema
vincentii ATCC 35580]
Length = 186
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
+Y VQV + E + ++ I + ++ + P + +KG + + FPGY
Sbjct: 3 YYAVQVKTGKEPELLKKI----RKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGY 58
Query: 65 VLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ ++ ++ + ++ TP FL +NP P+ D+++ + + + S V+F
Sbjct: 59 IFLEIDDLSLPLCWQLRKTPNFYHFLPNNQNPLPLVDNDLSLLHHFLSFGEVTAPSKVYF 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ R+CV DG G + VD K R V + ++ P++LA++ +E
Sbjct: 119 DANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIE 169
>gi|185178827|ref|ZP_02964615.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188024461|ref|ZP_02997110.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188518411|ref|ZP_03003907.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|225550802|ref|ZP_03771751.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
gi|225551181|ref|ZP_03772127.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|184209462|gb|EDU06505.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188018757|gb|EDU56797.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188998114|gb|EDU67211.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|225378996|gb|EEH01361.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|225379956|gb|EEH02318.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
Length = 257
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 54/226 (23%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR--------KGRK 53
T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ + K
Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82
Query: 54 VNSERRF---------------------FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-T 91
+ ++ F GY+ +KA MTD+++ I++T V G +G +
Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142
Query: 92 GEN--PSPVTDSEIEHIM--NQVEAAV---------QRPVSSV---------FFEVGERV 129
G+N P PV + +I ++ N + A+ Q+ V V FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202
Query: 130 -CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V+D F I K +D+ K VE FGR+ ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAK-IDQNKKVATVEFEFFGRINTLDLNFNDIQ 247
>gi|256822138|ref|YP_003146101.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069]
gi|256795677|gb|ACV26333.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069]
Length = 167
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A+E L + +P V + +G++ + FPGY
Sbjct: 8 WYLINSKPKQELRALEH---------LKNQEINCVLPVLEVERIIRGKRQKAIEPLFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ + + I+ T V F+ G P V DS +EH++ + P+ +
Sbjct: 59 LFVELQTNGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLL--ILDTSFTPIETNAPG 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G++V ++DGPF G+ K + EK R V + I G+VT +EL Q+ K
Sbjct: 117 AGDKVIITDGPFKDLEGVFKISNGEK-RSIVLLTILGKVTEMELENKQLRK 166
>gi|188524233|ref|ZP_03004287.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|198273402|ref|ZP_03205938.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
gi|195659836|gb|EDX53216.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|198249922|gb|EDY74702.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
Length = 257
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 54/226 (23%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR--------KGRK 53
T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ + K
Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82
Query: 54 VNSERRF---------------------FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-T 91
+ ++ F GY+ +KA MTD+++ I++T V G +G +
Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142
Query: 92 GEN--PSPVTDSEIEHIMNQVEAA-----------VQRPVSSV---------FFEVGERV 129
G+N P PV + +I ++ +A Q+ V V FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRTLVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202
Query: 130 -CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V+D F I K +D+ K VE FGR+ ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAK-IDQNKKVATVEFEFFGRINTLDLNFNDIQ 247
>gi|83950151|ref|ZP_00958884.1| transcriptional antitermination protein, putative [Roseovarius
nubinhibens ISM]
gi|83838050|gb|EAP77346.1| transcriptional antitermination protein, putative [Roseovarius
nubinhibens ISM]
Length = 169
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++ QV NC A ++ L R G +P E R G+ V + R FPGY
Sbjct: 9 WFLAQVKPNCANIADKN----LKRQGFKTF-----LPLEEETRQRNGKFVTAMRPLFPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + T+ T + + G P+ V + ++M + +A + + +
Sbjct: 60 IFVAFDAARGFWRTVNSTYGITRLVSFGNEPTAVPLDLVSYLMQRCDAE-GKLLPATHLS 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V ++ GPFA+F V+ + ++ RV V + I G T V + +Q+ +
Sbjct: 119 SGDKVTLTTGPFANFVAEVEKIAPDR-RVWVLMDIMGGQTRVAVGADQLRAV 169
>gi|13358146|ref|NP_078420.1| transcription antitermination factor [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|170762353|ref|YP_001752666.1| transcription termination/antitermination factor NusG [Ureaplasma
parvum serovar 3 str. ATCC 27815]
gi|171920320|ref|ZP_02931664.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|183508497|ref|ZP_02958026.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701857|ref|ZP_02971518.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|11357058|pir||A82874 transcription antitermination factor UU581 [imported] - Ureaplasma
urealyticum
gi|6899590|gb|AAF30995.1|AE002156_10 transcription antitermination factor [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|168827930|gb|ACA33192.1| transcription termination/antitermination factor NusG [Ureaplasma
parvum serovar 3 str. ATCC 27815]
gi|171902739|gb|EDT49028.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675925|gb|EDT87830.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701156|gb|EDU19438.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 258
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 54/224 (24%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-----------KGR 52
+WYIV V S E+K +E+I +L+ G ++++ I E++ V+ K R
Sbjct: 25 QWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMKNR 84
Query: 53 K--------VNSERRF----------FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGE 93
V+ ++ F GY+ +KA MTD+++ I++T V G +G +G+
Sbjct: 85 ANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSSGK 144
Query: 94 N--PSPVTDSEIEHIMNQVEAA--------------------VQRPVSSVFFEVGERV-C 130
N P PV + +I ++ +A + + FEV + V
Sbjct: 145 NVKPIPVPEDKILKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEVDQEVKI 204
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
++D F I K +D+ K VE FGR+ ++L +N ++
Sbjct: 205 IADTFFGEIAKIAK-IDQNKKIATVEFEFFGRINTLDLNFNDIQ 247
>gi|298704929|emb|CBJ28432.1| putative transcription antitermination protein [Ectocarpus
siliculosus]
Length = 823
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY+++ ++ E + S+ L +GL V EI +P R V + G KV E + G
Sbjct: 222 WYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPC-RQVPKQVGTKVTFKEEPIYQG 280
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------PSPVTDSEIEHIMNQVEAAVQRP 117
Y+ K M+ +V + D +++GF+G + P + +IE I +A
Sbjct: 281 YIYCKVKMSLEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKASEKALGANK 340
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VG+ V +S+GPFA G V + + + V V FGR + V L ++ V K+
Sbjct: 341 IPQL-LGVGDLVEISEGPFALKKGEVSKIKDGEYVVKVNT--FGRNSDVRLDWDGVRKL 396
>gi|266620791|ref|ZP_06113726.1| putative transcription antiterminator [Clostridium hathewayi DSM
13479]
gi|288867577|gb|EFC99875.1| putative transcription antiterminator [Clostridium hathewayi DSM
13479]
Length = 168
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV + E ESI + + H + IP + G+ ++ FPGY
Sbjct: 2 WYVIQVRTGLE----ESIRIQCEKLIDRHAMERCFIPYCEKMKCYYGKWHKEKQILFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + + ++ + + LGTG P+T SE E ++ Q+ Q S
Sbjct: 58 LFVVSQDVEALFLELNRIIGLTKLLGTGNMIVPLT-SEEESVLKQISNDDQIVTMSKGLI 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +V + +GP G + +D K R +E+ +FGR VEL +EK
Sbjct: 117 VNNQVIILEGPLKGREGYICKIDRHKRRARLELHMFGRKQNVELGLEILEK 167
>gi|295105743|emb|CBL03286.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 180
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 5 WYIVQVYSNCEKKAVESI----GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
WY++QV S E KA E I G+ S+ ++ E +P +V G+ R
Sbjct: 2 WYVIQVLSGQEDKACELINLHAAGQRSKDNRP-VLKECFVPRYQVERKFHGQYRTLTRNL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
FPGYV+ D++ + P LG+ ++ P+ SE + +N R +S
Sbjct: 61 FPGYVIAVTNRVDELNDRLVKIPTFTRMLGSEKSFIPLDRSE-KAFINAFTTEKHRTISL 119
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+E G++V V++GP + G + V+ K VEV +FGR VE+
Sbjct: 120 SKAVYE-GDKVVVTEGPMINREGWITEVNRRKGTARVEVSMFGRTINVEIG 169
>gi|146282124|ref|YP_001172277.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501]
gi|145570329|gb|ABP79435.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501]
Length = 169
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT---EITIPSERVVSVRKGRKVNSER 58
T RWY++Q E +A E HL+ E P + + R G+ +
Sbjct: 6 TARWYLIQTKPRQEARAEE------------HLLRQHFECYRPLKASAATRSGQGAKAGE 53
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+ I+ T ++ I+ T V + G P+PV D IE + ++ + P
Sbjct: 54 PLFPGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRLAQDERAPA 113
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVD-EEKS 151
++ F+ GERV VS G F+ I + D EE+S
Sbjct: 114 AN--FKPGERVQVSGGSFSDIEAIFVSSDGEERS 145
>gi|167463025|ref|ZP_02328114.1| putative transcription antiterminator [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322383390|ref|ZP_08057173.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
gi|321152294|gb|EFX45117.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
Length = 176
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 14/175 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V + E + G+ + +HL + IP + V KG + + R FPGY
Sbjct: 3 WYVLFVTT-----GKEDVVGKYISNFCNHLSLQCFIPKKVVPECHKGVRRDVIRVLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENP--------SPVTDSEIEHIMNQVEAAVQR 116
+ I+ M+ +Y+ +K+ P + + +G+ S + + E+E I +
Sbjct: 58 IFIRTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTI 117
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
S V + ++V V GP ++K VD+ K R +EV + + V++ N
Sbjct: 118 EYSEVSI-INKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGIN 171
>gi|257792184|ref|YP_003182790.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|257476081|gb|ACV56401.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
Length = 172
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63
WY+VQ EK ++ I + + L+ E IP V +G K+ SE PG
Sbjct: 4 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEV-LLPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSV 121
Y+ + K+ ++ PK LG + +P+ D E+ I N R V SS
Sbjct: 59 YIFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFI-NAFTKPDHRVVEFSSG 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ + + +GP + G++K +D K ++E+ I GRV V++ V K
Sbjct: 118 VME-GDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170
>gi|317490110|ref|ZP_07948599.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325833656|ref|ZP_08166105.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|316910815|gb|EFV32435.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325485580|gb|EGC88049.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 170
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63
WY+VQ EK ++ I + + L+ E IP V +G K+ SE PG
Sbjct: 2 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEV-LLPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSV 121
Y+ + K+ ++ PK LG + +P+ D E+ I N R V SS
Sbjct: 57 YIFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFI-NAFTKPDHRVVEFSSG 115
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ + + +GP + G++K +D K ++E+ I GRV V++ V K
Sbjct: 116 VME-GDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 168
>gi|114769689|ref|ZP_01447299.1| transcriptional antitermination protein, putative [alpha
proteobacterium HTCC2255]
gi|114549394|gb|EAU52276.1| transcriptional antitermination protein, putative [alpha
proteobacterium HTCC2255]
Length = 166
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ W+I+Q N +A ++ L+R G E +P + S + R +N+ R
Sbjct: 1 MSKEWFILQFKPNSHHQATKN----LTRQGF-----ETFLPLTDITSRKTSRFINTTRPL 51
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
FPGY+ I T +H I +T V + N + + +E++M + + + + PV
Sbjct: 52 FPGYMFITFDRTKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVRCDLSSKILPVE 111
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
++ + G++V + GPFA+F V+ + ++ R+ V + + R T ++ + +E
Sbjct: 112 NL--KKGDQVKILHGPFANFIATVETYETDQ-RIWVLMDLMSRKTKIQTPLDALE 163
>gi|332181491|gb|AEE17179.1| NGN domain-containing protein [Treponema brennaborense DSM 12168]
Length = 218
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 4/172 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
+Y VQV + E+ + SI +L + + + P R++ R+G +VN FPGY
Sbjct: 37 YYAVQVRTLKEEAYIASISRQLEDT---EIKIQFLFPKRRLIIRRQGEQVNELMPLFPGY 93
Query: 65 VLIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V I+ ++ ++Y+ + FL +N ++ ++ + + + S V+F
Sbjct: 94 VFIETEKLSTELYNVARSAKYFSRFLPNNQNICSLSGKDLAVLKHFIGFGAVAESSKVYF 153
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +R+ V+ GP G + VD K R V++ ++LA++ + K
Sbjct: 154 DENDRIVVTSGPLHGLEGSIVKVDRRKHRAKVKLDFANECFLLDLAFDIIGK 205
>gi|220923469|ref|YP_002498771.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219948076|gb|ACL58468.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 178
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++VQ E++ VE L+R G D +P RV +VR+GRKV+ + F Y
Sbjct: 8 WFVVQTGPARERRVVEL----LAREGADTW-----LPLFRVTTVRRGRKVDDFEKVFASY 58
Query: 65 V---LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP--------VTDSEIEHIMNQVEAA 113
V L + M + + D V+ LG + P P + D H ++ E
Sbjct: 59 VFAGLDEETMRRRGTSVLFDCDHVLDVLGV-DRPLPFPADALQVLADRLAGHNRDETEEG 117
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+R + +VGE + +GPF SF V+ V + V IFGR+TPVE +Q+
Sbjct: 118 -RRRTEAAKIQVGEMRRIINGPFMSFFAEVEEV-LSNGIIKAGVRIFGRITPVEFTPDQL 175
Query: 174 E 174
+
Sbjct: 176 D 176
>gi|169831854|ref|YP_001717836.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
gi|169638698|gb|ACA60204.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 173
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
E+ +P V R K + FPGY+ +K + + TP V L G+ P
Sbjct: 28 EVFLPRISVTRKRGASKFSLWEPLFPGYLFVKLLPEPVQVQRVNWTPGVRRLLCAGDTPV 87
Query: 97 PVTDSEIEHIMNQVEAAVQ-RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
PV D I I +V + P F G RV V GPFA G+V+ + RV V
Sbjct: 88 PVPDEAIALIRQRVGPGGRLTPKPQAEFPAGSRVAVRHGPFAGLLGVVEKPMSGRGRVRV 147
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
+ + R T VE+ ++++
Sbjct: 148 LLELLQRQTAVEIDAVDLDRL 168
>gi|257791667|ref|YP_003182273.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|317487867|ref|ZP_07946459.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325830645|ref|ZP_08164066.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|257475564|gb|ACV55884.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|316912993|gb|EFV34510.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325487391|gb|EGC89833.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 170
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ QV + E +E + S ++ + +P V+ +G +R FPGY
Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPS----VMEDCFMPEYEVMWKIRGEWRLVKRLLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS-PVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ + + + P I LG EN P+T E + ++ ++ +S +
Sbjct: 58 LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMDGNHTVRMSEGYI 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+++ V+ GP F G ++ +D K R +++V +FGR P + V K
Sbjct: 118 S-GDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRK 168
>gi|302337848|ref|YP_003803054.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
gi|301635033|gb|ADK80460.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
Length = 184
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 5 WYIVQVYSNCEKK----AVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+Y +QV + EK+ A +I G++ +T + R + +RK G+ +
Sbjct: 3 YYSMQVITRQEKRFMQLAENAIAQFEKEQGVE--ITGKLLWPRRSLKIRKRGKTTQEQAP 60
Query: 60 FFPGYVLIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE---HIMNQVEAAVQ 115
FPGY+ +A + +VY +K I FL + + P+T + E H +N E
Sbjct: 61 IFPGYLFWQAESLEPEVYWLLKRNSGFIRFLKSNYDIEPLTGASKELLVHFLNYGEVV-- 118
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+V F G+R+ V GP G ++ V++ K R +E++++ + ++ A++ ++K
Sbjct: 119 -GTSTVTFGTGDRIVVLSGPMKGLEGNIRKVNKRKGRAKIELMLYEQSFLIDFAFDGIKK 177
>gi|301058101|ref|ZP_07199153.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
gi|300447733|gb|EFK11446.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
Length = 179
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+ + S E+K + G+ E +P +V+S RK R+ PG
Sbjct: 15 RWWALHTRSRFEQKVYTGLCGK---------SLEALLPRIQVMSRRKDRRKKILVPLLPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH--IMNQVEAAVQRPVSSV 121
YV +++ + + YH I T V+ + P P + EI IM+ + VQ +
Sbjct: 66 YVFVRSTLAPEEYHRIIQTVGVVRMVSFRGTPIPADEKEIASLMIMDGTDRTVQ---NRS 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+RV + +GP G ++ RV + + + R VE+ +E+I
Sbjct: 123 YMREGDRVMIMEGPLKGLEGFYIRHKDKTERVVISIELLQRSLEVEIEDWSLERI 177
>gi|307544895|ref|YP_003897374.1| transcriptional antiterminator RfaH [Halomonas elongata DSM 2581]
gi|307216919|emb|CBV42189.1| K05785 transcriptional antiterminator RfaH [Halomonas elongata DSM
2581]
Length = 180
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY++Q S +AVE +G + EI P RV R+G+ V + FP
Sbjct: 16 PRWYVIQCKSGESFRAVEHLGNQ---------GYEIFHPVLRVQKKRRGKLVWAVEPLFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ I+ D + I+ T V+ + G + P PV D E+ + + + ++V
Sbjct: 67 YYLFIRLDRLDSNWRPIRSTRGVLKIVTFGLDTPVPV-DDELVASLREHGSQEAGETATV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+F GE+V +++GPF + E+ R V + + + +E++ +Q+++
Sbjct: 126 YFRAGEQVEITEGPFKDLQAVFATHKGEE-RAIVLLNMLHKRQRLEMSVSQLKR 178
>gi|237734430|ref|ZP_04564911.1| nusG antitermination factor [Mollicutes bacterium D7]
gi|229382660|gb|EEO32751.1| nusG antitermination factor [Coprobacillus sp. D7]
Length = 173
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++QV + E+K + +SR ++ E IP + +G +
Sbjct: 1 MYENWYVIQVRTGKEEKIKNTCEKLISRD----ILEECFIPKCIRLKKYQGTWKEVDEVL 56
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
F GYV + + D++++ +K P + LG GE P+ E ++ + +S
Sbjct: 57 FKGYVFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEEAIFLLKFGKEKHIVDLS 116
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ E G+++ + GP + G++K +D K ++EV +F ++T V++
Sbjct: 117 QGYIE-GDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVG 165
>gi|327480363|gb|AEA83673.1| transcriptional activator RfaH [Pseudomonas stutzeri DSM 4166]
Length = 169
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT---EITIPSERVVSVRKGRKVNSER 58
T RWY++Q E +A E HL+ E P + + R + +
Sbjct: 6 TARWYLIQTKPRQEARAEE------------HLLRQHFECYRPLKASAATRSAQGAKAGE 53
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+ I+ T ++ I+ T V + G P+PV D IE + ++ + P
Sbjct: 54 PLFPGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRLAQDERAPA 113
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVD-EEKS 151
++ F+ GERV VS G F+ I + D EE+S
Sbjct: 114 AN--FKPGERVQVSGGSFSEIEAIFVSSDGEERS 145
>gi|167957244|ref|ZP_02544318.1| transcription antitermination factor [candidate division TM7
single-cell isolate TM7c]
Length = 75
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V+ P + FE GE V V DGPF F+G + +D K ++ V V +FGR TPVEL Q
Sbjct: 12 GVEEPKHQIDFEEGEVVSVIDGPFKGFDGTISEIDTVKGKIKVMVSMFGRDTPVELDALQ 71
Query: 173 VEKI 176
V+KI
Sbjct: 72 VKKI 75
>gi|320535930|ref|ZP_08035997.1| transcription termination factor NusG [Treponema phagedenis F0421]
gi|320147213|gb|EFW38762.1| transcription termination factor NusG [Treponema phagedenis F0421]
Length = 182
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 43 ERVVSVRK-GRKVNSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTD 100
+R +++RK G FPGYV + A + D K+Y +K T FL +NPSP+
Sbjct: 37 QRTLNIRKKGVFFKKNMPVFPGYVFLAATILDAKLYKKLKSTKGFYRFLPNNQNPSPLFG 96
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
++ + + + +S V F+ +R+ + GP G + VD+ K R +++ ++
Sbjct: 97 RDLMLLQHFISFGNLAGISQVCFDENDRIKILAGPLKGLEGDIVKVDKRKGRAKIKLDMY 156
Query: 161 GRVTPVELAYNQVEKI 176
++ + +E I
Sbjct: 157 TDSFLIDFGFEILENI 172
>gi|85860190|ref|YP_462392.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
gi|85723281|gb|ABC78224.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
Length = 167
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V S E K +GL +P V S RK R+ FPGY
Sbjct: 3 WYAVHTRSRHEDKVF---------TGLVQKSITTFLPKIEVWSKRKDRRKRIMTPLFPGY 53
Query: 65 VLIKA-VMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
+ + + ++ + T V+ LG TG P PV D +I+ I V++ V+ V ++
Sbjct: 54 LFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVE--VQNL 111
Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VGE + DGPF G V D +K V + + R ++L +Q+EKI
Sbjct: 112 QYPHVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167
>gi|220926733|ref|YP_002502035.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219951340|gb|ACL61732.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 254
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 24/180 (13%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFFP 62
RW++V ++A + L+R+G+ ++T+ ERV V GR+ +R+
Sbjct: 90 RWHVVVAKPRYARRAAKD----LNRAGIPAVLTD-----ERVEVVAENGRRRIVQRQLLR 140
Query: 63 G--YVLIKA-VMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQ 115
+V +KA D V+ + ++D V LG P V +E+ + + + +
Sbjct: 141 RVLFVGLKAGAPVDAVHGETYFVRDA--VRDGLG---RPIVVPPNELSQFVQALSDTLTE 195
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R S+ FE G+ V + DGPFASFNG+V++ D R+ V V IFGR++ V L ++QVE+
Sbjct: 196 RDPSA--FEPGDEVWIKDGPFASFNGVVEDADFVTRRLKVGVQIFGRISSVGLDFSQVER 253
>gi|218901299|ref|YP_002449133.1| transcription antitermination protein NusG [Bacillus cereus AH820]
gi|229077392|ref|ZP_04210051.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-2]
gi|254724238|ref|ZP_05186023.1| transcription antitermination protein NusG [Bacillus anthracis str.
A1055]
gi|218536551|gb|ACK88949.1| transcription antitermination protein NusG [Bacillus cereus AH820]
gi|228705917|gb|EEL58244.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-2]
Length = 68
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 15 FELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 68
>gi|149003856|ref|ZP_01828684.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS69]
gi|147758190|gb|EDK65193.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS69]
Length = 103
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 71 MTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
MTD+ + +++TP V GF+G+ N P+P+ + EI I+ + VQ V E+G+
Sbjct: 1 MTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDV--EIGQ 58
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V + DG FA + G + +D K V + + +FG T E+ NQ+
Sbjct: 59 TVRIIDGAFADYTGKITEIDNNK--VKMIISMFGNDTVAEVNLNQI 102
>gi|218901298|ref|YP_002449132.1| transcription antitermination protein NusG [Bacillus cereus
AH820]
gi|218535625|gb|ACK88023.1| transcription antitermination protein NusG [Bacillus cereus
AH820]
Length = 96
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLXKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
FPGYVL++ +MTD ++ +++TP V GF
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGF 88
>gi|323454647|gb|EGB10517.1| hypothetical protein AURANDRAFT_62510 [Aureococcus anophagefferens]
Length = 544
Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 5 WYIVQVYSNCE---KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERRF 60
WYI+Q Y E +E I G+ V I +P+E+V S R GRKV + E+
Sbjct: 51 WYILQCYVGNEVWCAATIEEILGKPEHVEQRSRVETILVPTEKVASTR-GRKVYHKEKII 109
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL--------GTGE---------NPSPVTDSEI 103
+PGYV + M +++ + PK+ F+ G GE P P++ E
Sbjct: 110 YPGYVFCRLRMEQELWRVLTRVPKIANFVGIDAGMRNGIGEIVEGYKGAVTPVPLSAREA 169
Query: 104 EHIMNQVEAAVQRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEK 150
+ +++ + ++ F +G+ V V DGP A G+V++V ++
Sbjct: 170 QMMLSVHLEGQEVGEDNIVDRFALGDVVAVLDGPSAGERGLVRSVKNDQ 218
>gi|307308731|ref|ZP_07588427.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
gi|306900737|gb|EFN31348.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
Length = 215
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY + V E S L E +P ERVV VR GR S+ +F
Sbjct: 47 SARWYCLLVKKGREFDVENS---------LREANVEAFMPRERVVRVRHGRIFESDVPYF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSS 120
P Y+L++ V + + +H ++ VI +G V D + E A R +
Sbjct: 98 PSYMLVRCVPSPEAFHGLRRHRNVIDIVGGASGYHIVRDENVAMFKRICEDAEAPRVATD 157
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVVIFGR 162
F+ G+R + GPFA F IV V +++ V + + GR
Sbjct: 158 KTFKEGDRADIVLGPFAGFMCIVTAVKWCRQAKASVRIDVHGR 200
>gi|309379174|emb|CBX22305.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 47
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 36/46 (78%)
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 1 MNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 46
>gi|220926326|ref|YP_002501628.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219950933|gb|ACL61325.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 218
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V+++ F +G+ V V++GP A GIV+ VD + R V V +FGR TPV+L +Q+E+
Sbjct: 160 VAALLFALGDAVRVTEGPLARLPGIVEAVDPHRRRYRVAVEMFGRATPVDLDEDQIER 217
>gi|210631838|ref|ZP_03297080.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279]
gi|210159958|gb|EEA90929.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279]
Length = 192
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSERR 59
M +WY++QV E IG + +S L+ E+ P E + VR GR V ++
Sbjct: 1 MRVQWYVIQVMKGREDSMASLIGRVVPKS----LLQEVFSPKYETEIKVR-GRWVPVQKT 55
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGY++ + + ++D P+ L G P+ +E+E I + +
Sbjct: 56 LLPGYLIAVTNDPEGLEAVLRDLPEFARLLAQGNEFVPLAPAEVEVIGSFTSPGKRVVPM 115
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ + G+RV V+ GP +VK + KS +EV + GRV + + K
Sbjct: 116 SIGVKDGDRVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171
>gi|311695295|gb|ADP98168.1| transcriptional activator RfaH [marine bacterium HP15]
Length = 126
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 48 VRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
++ G++ FPGY+ + TD ++ ++ T V+ +G P+P++D+ I+HI
Sbjct: 4 IKGGKRSKKLEPLFPGYLFVNLEQTDPMWSKLRSTRGVLRIVGFANKPAPISDAVIQHIK 63
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ +++ ++ + G+ V +S+GPF N I + D E+ +
Sbjct: 64 DSLDSVAEQG----GIKPGQAVQLSEGPFEGINAIFQAYDGEERAI 105
>gi|149916011|ref|ZP_01904534.1| NusG antitermination factor [Roseobacter sp. AzwK-3b]
gi|149810085|gb|EDM69933.1| NusG antitermination factor [Roseobacter sp. AzwK-3b]
Length = 177
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ N K A + L R + +P + V R G+ + + FPG
Sbjct: 8 RWYLVQFKPNSHKIAARN----LQRQSF-----QTFLPMQDVTRRRAGKFHTAPQPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ + + I T V + P PV D+ + ++ + + + + F
Sbjct: 59 YMFVSLDTIRGPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKL-LPPETF 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
GE+V + GPFASF V+ + ++ RV V + G+ T +++
Sbjct: 118 SPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQV 161
>gi|254724237|ref|ZP_05186022.1| transcription antitermination protein NusG [Bacillus anthracis
str. A1055]
Length = 96
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIG 87
FPGYVL++ +MTD ++ +++TP V G
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTG 87
>gi|171910013|ref|ZP_02925483.1| NusG antitermination factor [Verrucomicrobium spinosum DSM 4136]
Length = 158
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y + V ++ + +K T VI +G G +P+P+ D IE++ +++ A R V
Sbjct: 31 LFPSYFFARFVYSE-AHRAVKHTHNVIRIVGFGGDPAPIPDLTIENLREEMQGAELREVK 89
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
EVG+ V V++GP G+V+++ + RV + + GR + VE+ +++
Sbjct: 90 -YGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKLLLEFLGRQSLVEVQASKL 142
>gi|255282325|ref|ZP_05346880.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
gi|255267273|gb|EET60478.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
Length = 183
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY++QV + E E I + R + ++ + IP V +G ++ F
Sbjct: 14 TEVWYVMQVQTGME----ERICAQCRRKISETVLEQCFIPRYEVKKHIQGVWKTQKQILF 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIM--NQVEAAVQR 116
PGYV V+T + + ++ KVIG +GTG P++++E E ++ E VQ
Sbjct: 70 PGYVF---VVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGKEQVVQM 126
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G RV + GP G ++ +D K + +E+ + G + V++
Sbjct: 127 SEGII---TGSRVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVG 176
>gi|220926074|ref|YP_002501376.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219950681|gb|ACL61073.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 255
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ + + GPFASF+GI+++ D R+ V V IFGR +PV L +++VE+
Sbjct: 202 FEPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVER 254
>gi|78188132|ref|YP_378470.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3]
gi|78170331|gb|ABB27427.1| transcription antitermination protein nusG [Chlorobium
chlorochromatii CaD3]
Length = 197
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
+TP+ WY V V S EKK +++ R S L P + RK
Sbjct: 5 ITPQNWYAVYVRSRYEKKVYQALLEREVNSFL---------PLYETIRQWSDRKKKVSEP 55
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRP 117
F GYV + M + + DT V+ F+G G PS + + EIE + V A+ R
Sbjct: 56 LFRGYVFVNIAMQQESIKVL-DTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRT 114
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIV 143
V+S G++V V GPF G+V
Sbjct: 115 VAS--LPAGQKVRVIAGPFKDMEGVV 138
>gi|292559253|gb|ADE32254.1| transcription antitermination protein NusG [Streptococcus suis GZ1]
Length = 172
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q YS E K E++ R + + + IP++ V + G E FPGY
Sbjct: 9 WFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
VL++ VMTD+ + +++TP V + ++ T VT + NQ+ ++ V S
Sbjct: 69 VLVEMVMTDEAWFVVRNTPNVTVSWVHT------VT------VQNQLHFWKKKFVKS--- 113
Query: 124 EVGERVCVSDGPFASF 139
C+ D PF +
Sbjct: 114 -----WCLWDKPFKNL 124
>gi|47168441|pdb|1NZ9|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
C-Terminal (Ngc) Domain From Thermus Thermophilus
Length = 58
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++QV K
Sbjct: 1 AQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57
>gi|255283968|ref|ZP_05348523.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
gi|255265550|gb|EET58755.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
Length = 183
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY++QV + E++ ++S + L+ IP V +G ++ F
Sbjct: 14 TEVWYVMQVQTGMEERICAQCRRKISETVLEQCF----IPRYEVKKHIQGEWKTQKQILF 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIM--NQVEAAVQR 116
PGYV V+T + + ++ KVIG +GTG P++++E E ++ E VQ
Sbjct: 70 PGYVF---VVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGEEQVVQM 126
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G +V + GP G ++ +D K + +E+ + G + V++
Sbjct: 127 SEGII---TGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVG 176
>gi|323691443|ref|ZP_08105715.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum
WAL-14673]
gi|323504489|gb|EGB20279.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum
WAL-14673]
Length = 213
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 15/187 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY++QV E+K E I +L+ D + E IP + V KGR E F
Sbjct: 17 TDMWYVIQVQGGQEEKTAELIKKQLTLC--DDSLRECFIPKKERVKKFKGRWQQVEELLF 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIMNQVEAAVQRP 117
PGYV + +++Y +K ++ L G + S + I+ I +
Sbjct: 75 PGYVFADSGNAEELYRRLKQVGRLTKVLQDGNFLFLSLSEDEEQRIKAIGDCRHVTRVSK 134
Query: 118 VSSVFFEV---------GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
V V E G+ V V +GP G V V+ K V V++ GR+ V+L
Sbjct: 135 VRVVGGEYSGRADGIDRGKNVVVREGPLKGLEGYVTKVNLHKREVTVQMPFAGRMVDVKL 194
Query: 169 AYNQVEK 175
V++
Sbjct: 195 GIELVDE 201
>gi|92114264|ref|YP_574192.1| transcription antitermination protein nusG [Chromohalobacter
salexigens DSM 3043]
gi|91797354|gb|ABE59493.1| transcription antitermination protein nusG [Chromohalobacter
salexigens DSM 3043]
Length = 182
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE---ITIPSERVVSVRKGRKVNSERR 59
PRWY+VQ C+ GG R+G +HL + + P V R+ + V
Sbjct: 17 PRWYVVQ----CK-------GGESFRAG-EHLTNQGYRVFHPVLEVQKKRRNKLVWIAEP 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPV 118
FP Y+ I + I+ T V+ +G G+ P PV D+ IE + + R
Sbjct: 65 LFPHYLFIHLDRVASNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTS 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGI 142
+ +F GE V +++GPF + +
Sbjct: 125 GNAYFRPGEIVEITEGPFQALQAV 148
>gi|328955784|ref|YP_004373117.1| NusG antitermination factor [Coriobacterium glomerans PW2]
gi|328456108|gb|AEB07302.1| NusG antitermination factor [Coriobacterium glomerans PW2]
Length = 181
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-----TEITIPSERVVSVRKGRKVNSERR 59
WY++QV+ E VE + + S LD TEI + E V+
Sbjct: 2 WYVIQVFKGRESAMVEYVKRMVPASVLDECFSPRFETEIKVGGEWTRCVKT--------- 52
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGY++ A DK+ + T + + + G P+ + E I + +
Sbjct: 53 LLPGYIIAIATGPDKLSRHLYGTLEFVRLVKQGGRFWPLQEEERNLIARFTKKGSRTVPM 112
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
S+ + G+ V V GP G++K++D KS +EV I GR
Sbjct: 113 SIAVKDGDNVIVKSGPLMGHEGLIKSIDRRKSIATLEVEICGR 155
>gi|320161352|ref|YP_004174576.1| putative RfaH family transcriptional regulator [Anaerolinea
thermophila UNI-1]
gi|319995205|dbj|BAJ63976.1| putative RfaH family transcriptional regulator [Anaerolinea
thermophila UNI-1]
Length = 178
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 17/172 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERR 59
M+ +WY +Q N E+ E R G+ E+ P RV V + RK+ R
Sbjct: 1 MSKKWYAIQSKPNKEQALCEQFQSR----GI-----EVFYPQIRVNPVNPRARKI---RP 48
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+FPGY+ + + + I+ P G + P+ V D+ IE I +V+ V R
Sbjct: 49 YFPGYLFVHVDLDEVGLSVIRWIPFARGVVSFSNEPASVPDNLIEAIRRRVD-EVNRAGG 107
Query: 120 SVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG-RVTPVEL 168
+ + GE V + +GPFA + I K RV V + + R PVE+
Sbjct: 108 ELLETLKPGEPVLIQEGPFAGYEAIFDVRLSGKERVRVLIQLLSQRYIPVEM 159
>gi|319936183|ref|ZP_08010603.1| NusG antitermination factor [Coprobacillus sp. 29_1]
gi|319808757|gb|EFW05290.1| NusG antitermination factor [Coprobacillus sp. 29_1]
Length = 170
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV S E++ + +S D ++ E IP +G + F GY
Sbjct: 3 WYVIQVRSGHEREIADKCRFLIS----DEILKECFIPEYICKKKFRGEWHDVRNVLFRGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V + + D++++ +K P +G E P+ D E+E + + +S F
Sbjct: 59 VFLISDHIDELFNELKKIPDFTKVIGKKKETIYPLKDGEVEFLKTFGKDDHIVDMSVGFI 118
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+R+ +++GP G++ +D K ++ V IF T ++ + K
Sbjct: 119 E-GDRIHITEGPLQGREGLIAKIDRHKRIAYISVNIFNEETTAKVGLEIISK 169
>gi|126667149|ref|ZP_01738123.1| transcriptional activator RfaH [Marinobacter sp. ELB17]
gi|126628305|gb|EAZ98928.1| transcriptional activator RfaH [Marinobacter sp. ELB17]
Length = 143
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 41 PSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD 100
P V +R G++ F GY+ I + V+ ++ T VI +G G P PV D
Sbjct: 13 PKVMVEKLRSGKRSCKLEALFSGYIFINLSQLNPVWSKLRSTRGVIRIVGFGGKPLPVKD 72
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD-EEKSRVHVEVV 158
I+H+ A++ + S+ + G+ V V++GPFA I + D +E++ V +E +
Sbjct: 73 EVIDHL----RASLDKVASAGGIKSGDDVDVAEGPFAGMRAIFQCYDGDERAIVLIEFM 127
>gi|146340576|ref|YP_001205624.1| putative transcription antitermination protein NusG [Bradyrhizobium
sp. ORS278]
gi|146193382|emb|CAL77398.1| putative transcription antitermination protein NusG [Bradyrhizobium
sp. ORS278]
Length = 201
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 13/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI++ + +CE K +++ R + + +T+ S+ +R+G + ERR
Sbjct: 31 WYILRTHPHCEAKVMKAFRLR----NISAYLPVMTV-SKEFRRMRRGFEW-IERRDVVSP 84
Query: 65 VLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-- 119
+++ AV+ ++ + + +G L GE +T + I ++E P S
Sbjct: 85 LILGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDI-RKIEDIANTPKSKR 143
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVG+ V V GPF F+ V+ +D + R+ V IFGR+TP+++ ++E +
Sbjct: 144 ARAFEVGQLVRVLSGPFRYFSARVERIDS-RGRLSVGAEIFGRITPIDIDEGEIEAV 199
>gi|295106671|emb|CBL04214.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 174
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 8/173 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV E++ + + + D ++ E IP ++ KG PGY
Sbjct: 2 WYVVQVVGGRERRVLHLVEQLVD----DDVLQECFIPQYEIMKKTKGEWKRRSEILLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122
+ + D+ ++ P LG P+ EI I + R V S
Sbjct: 58 LFLITDKVDQAADELRKVPAFTKLLGNDNAFIPLNADEIAFI-DSFTTKDHRVVEMSEGV 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ + ++ GP +VK +D K +VE +FGR +++ V K
Sbjct: 117 IE-GDEISITKGPLVHQTALVKKIDRHKRLAYVETTMFGRKLNLKVGLEIVRK 168
>gi|210633806|ref|ZP_03297853.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279]
gi|210159066|gb|EEA90037.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279]
Length = 217
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V V + E + I R + +V E P R G ++ E+ PGY
Sbjct: 37 WYVVNVPTGRESALCKVI----ERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKTLLPGY 92
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE---IEHIMNQVEAAVQRPVSSV 121
V++ +V +++ P+ L GE+ P+ D E I+ + E V P+S
Sbjct: 93 VIVATEQIGRVKRLLREVPEYTRVLNMGESFVPLADGERAWIDAFTRKGERCV--PMSMG 150
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
E G+ V V GP +K+V+ +S +VE+ I GR
Sbjct: 151 VME-GDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGR 190
>gi|26554337|ref|NP_758271.1| transcription antitermination factor [Mycoplasma penetrans HF-2]
gi|26454346|dbj|BAC44675.1| transcription antitermination factor [Mycoplasma penetrans HF-2]
Length = 348
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 51/219 (23%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE--RRF- 60
+WYIV + E ++I ++ L ++V E+ + R +++ +N+ RF
Sbjct: 19 KWYIVTSINGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPINNPPPSRFR 78
Query: 61 -------------------------FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---G 92
FPGY+ IK +M D ++ I++T V GF+G+ G
Sbjct: 79 NTKSITWETLPGGRYKKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVGSSGKG 138
Query: 93 ENPSPVTDSEIEHI----MNQ-----------VEAAVQRPVSS----VFFEVGERVCVSD 133
P P++D E+ ++ MNQ VE V +P + F + G + D
Sbjct: 139 AKPIPMSDIEVANLFNPEMNQDIIINKTSDVFVEQTVSKPREAEKRIEFLDSGNNLVDKD 198
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
G F S N +N EE S E V V V ++ +Q
Sbjct: 199 GFFNS-NLNQENKGEEASSESTENVESSNVEEVSVSMDQ 236
>gi|78187519|ref|YP_375562.1| NusG antitermination factor [Chlorobium luteolum DSM 273]
gi|78167421|gb|ABB24519.1| transcription antitermination protein nusG [Chlorobium luteolum DSM
273]
Length = 170
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ P WY V V S EKK + + + S L L T V RK
Sbjct: 5 LDPHWYAVYVRSRYEKKVHQWMLEKELNSFLPLLET---------VRQWSDRKKKVYEPL 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPV 118
F GYV ++ M + + + +T V+ F+G G NPS ++ +IE + V A+ + V
Sbjct: 56 FRGYVFVQIDMKHE-HVKVLETEGVVKFIGIGRNPSVISPRDIEWLKTLVREPDALHQTV 114
Query: 119 SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVVIFG 161
SS+ + G++V V GPF G +VK EE+ V E ++ G
Sbjct: 115 SSIPY--GKKVRVLAGPFKDLEGVVVKEGREERLVVFFESIMQG 156
>gi|116749134|ref|YP_845821.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|116698198|gb|ABK17386.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
Length = 212
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 16/179 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T W+ + V EK+ V RL + +D +P S R R+ F
Sbjct: 38 TKSWFALYVQVKHEKEVVR----RLDQKSIDCF-----LPLMECWSKRLDRRKRITLPLF 88
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---IMNQVEAAVQRPV 118
PGYV + V+ + I TP + L E P P+ +IE+ I+N ++ P
Sbjct: 89 PGYVFVHTVLDNYTNVNILKTPGALSILKNSEGPLPIPVYQIENLQTILNSSKSLDLHP- 147
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ + GE V V GP + GI+K +K R+ V V + VEL VE +
Sbjct: 148 ---YLKEGEWVRVIRGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVEATI 203
>gi|90417218|ref|ZP_01225145.1| transcriptional activator RfaH [marine gamma proteobacterium
HTCC2207]
gi|90330994|gb|EAS46255.1| transcriptional activator RfaH [marine gamma proteobacterium
HTCC2207]
Length = 169
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q S E +AVE+ L R G+ P +V + +G +V E FPGY
Sbjct: 4 WFLLQTKSKQEGRAVEN----LERQGVKSFC-----PMIKVEKLSRGSRVVKEEALFPGY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + T++ T V F+ + P V +S I +M + +A VSS+ +
Sbjct: 55 LFVNFDQSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRTDAGNDETVSSLPSK 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEK 150
GER+ + DGPF N + D ++
Sbjct: 115 -GERLQIIDGPFRGLNAVFSQPDGDR 139
>gi|312960453|ref|ZP_07774962.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6]
gi|311285338|gb|EFQ63910.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6]
Length = 169
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ C+ + E L R G + T ER++ KG + FPGY
Sbjct: 12 WYLVQ----CKARQDERAEAHLQRQGYTCFRSICT--RERLL---KGERRVMTESLFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ D + ++ T V + G +P PV D ++++++ +P+ + +
Sbjct: 63 LFIQLSSQDS-WSPLRSTRGVSRIVAFGGDPLPVGD----ELVDELQRRNHQPLVTPLWA 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE V +++GPFA G+ + E+ R V + + R V L N V+ +
Sbjct: 118 PGENVRINEGPFAELEGVFLGMTGEE-RAIVLINLLHREHRVGLPLNAVKSL 168
>gi|257458184|ref|ZP_05623338.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
gi|257444478|gb|EEV19567.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
Length = 131
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ ++S EK+ +I + + +++EI IP E + V+ G+K R+
Sbjct: 1 MAKEWYILHIFSGYEKRIERAIRLLIENGEIPAGVISEIKIPEEELTEVKDGKKRVVRRK 60
Query: 60 FFPGYVLIK----AVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQ 109
F PGY+LI+ AV V I+ V GFLG P ++ E + ++ +
Sbjct: 61 FLPGYILIEMDLPAVNWKSVCTPIRRIHGVTGFLGVVGDARPQSISADEAKSVLQK 116
>gi|257458183|ref|ZP_05623337.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
gi|257444477|gb|EEV19566.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
Length = 55
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G++V + +GPF +F G V+ V E++++ V V IFGR TPVE+ QVE I
Sbjct: 2 FEPGQQVKIIEGPFDTFTGTVEEVMAERNKLRVMVAIFGRTTPVEVDMLQVELI 55
>gi|262276329|ref|ZP_06054138.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886]
gi|262220137|gb|EEY71453.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886]
Length = 165
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M P WY++ C++ + L R G+D P V +R+G++ +
Sbjct: 1 MDP-WYLL----YCKRSEQQRAEQHLKRQGVD-----CYYPQVMVEKIRRGKRSSELEPL 50
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP YV + T++ T V+ F+ G P+ V I H+M ++ QR S
Sbjct: 51 FPNYVFASFDPEKISFTTVRSTRGVVDFVRQGLMPTVVPAELITHLMAHEDSDEQREALS 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEE 149
F+ G++V V G F I K D E
Sbjct: 111 DVFKPGDQVEVLSGLFEGTEAIYKEADGE 139
>gi|330960426|gb|EGH60686.1| transcriptional activator RfaH [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 176
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q EK+A E + R R + PS ++ +V SE FPG
Sbjct: 15 RWYLIQTRPRQEKRAEEHL--RRQRFECYRPLKAAAKPS--LI------RVQSEEALFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I+ ++ I+ T V + G +P P+ D IE I +++ P F
Sbjct: 65 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPIHDQLIEQIRDRLTL----PQRHTAF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
GE+V ++ G F I D
Sbjct: 121 AQGEQVMITTGSFCDVEAIFLTAD 144
>gi|325970070|ref|YP_004246261.1| NusG antitermination factor [Spirochaeta sp. Buddy]
gi|324025308|gb|ADY12067.1| NusG antitermination factor [Spirochaeta sp. Buddy]
Length = 182
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
+Y + + E+K + R + +I IP R++ RKG+K+ S+ PGY
Sbjct: 3 YYFIACRTGGEEKVRAHLNKFFIRERGEMHEVDIFIPMRRMIDRRKGKKIMSDHPILPGY 62
Query: 65 VLIKA--VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+L+ + +TD V I P GFL + + + ++ + S V
Sbjct: 63 LLLSSEEPLTDFVM-DIHRIPGCYGFLHNLDKTIELKGPDHQYAAWIMHNKGTIKPSKVV 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ GE + V +GP F G V +VD +RV VE
Sbjct: 122 YTQGEPIKVVEGPLQDFMGTVISVDYRHNRVMVE 155
>gi|115456311|ref|NP_001051756.1| Os03g0825500 [Oryza sativa Japonica Group]
gi|15042831|gb|AAK82454.1|AC091247_21 putative transcription factor [Oryza sativa Japonica Group]
gi|108711839|gb|ABF99634.1| KOW motif family protein, expressed [Oryza sativa Japonica Group]
gi|108711840|gb|ABF99635.1| KOW motif family protein, expressed [Oryza sativa Japonica Group]
gi|113550227|dbj|BAF13670.1| Os03g0825500 [Oryza sativa Japonica Group]
gi|125546265|gb|EAY92404.1| hypothetical protein OsI_14139 [Oryza sativa Indica Group]
Length = 330
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 53/226 (23%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FF 61
P+W++V+V V+ + +SR L +I PS +V K ++++ +
Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRR-YPELSFKIYNPSIQVKKRLKNGSISTKSKPLH 162
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHI------- 106
PG V + + +V+ I+DT GF+G + P P+ E+E I
Sbjct: 163 PGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEEVESIIREEKEE 222
Query: 107 -------------------------------MNQVEAAVQRPVSS-----VFFEVGERVC 130
MN+++ ++P+S F G V
Sbjct: 223 QERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVH 282
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GPF F G + V+ + + +++ +FG+ + V+L ++Q+E +
Sbjct: 283 VLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 328
>gi|110597105|ref|ZP_01385394.1| transcription antitermination protein NusG:KOW [Chlorobium
ferrooxidans DSM 13031]
gi|110341296|gb|EAT59761.1| transcription antitermination protein NusG:KOW [Chlorobium
ferrooxidans DSM 13031]
Length = 194
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V V S CEK+ + + + L L T RK F G
Sbjct: 8 RWYAVYVRSRCEKQVYRMLAEKQITTFLPLLET---------WKQWSDRKKKVSEPLFRG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSSV 121
YV + M + + +T V+ F+G G+ PS + + +I+ + V A+ R V S+
Sbjct: 59 YVFVNIDMRHD-HLPVLETEGVVKFIGIGKVPSVIAEKDIDWLRKLVREPEAIGRTVDSI 117
Query: 122 FFEVGERVCVSDGPFASFNGIV 143
VG++V V GPF F G+V
Sbjct: 118 --PVGQKVKVLAGPFKDFEGVV 137
>gi|145220255|ref|YP_001130964.1| transcription antitermination protein nusG [Prosthecochloris
vibrioformis DSM 265]
gi|145206419|gb|ABP37462.1| transcription antitermination protein nusG [Chlorobium
phaeovibrioides DSM 265]
Length = 169
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ P WY V V S EKK + + + S L L T + RK
Sbjct: 5 LNPHWYAVYVRSRYEKKVHQWLEEKELTSFLPLLET---------MRQWSDRKKKVYEPL 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPV 118
F GYV + M + + + +T V+ F+G G NPS +++ +IE + V A+ + V
Sbjct: 56 FRGYVFVNIDMKHE-HVKVLETEGVVKFIGIGRNPSVISERDIEWLRTLVREPDALHQTV 114
Query: 119 SSVFFEVGERVCVSDGPFASFNGIV 143
S++ VG +V V GPF GIV
Sbjct: 115 STM--PVGRKVRVLAGPFKDLEGIV 137
>gi|125973877|ref|YP_001037787.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405]
gi|256004332|ref|ZP_05429314.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|125714102|gb|ABN52594.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405]
gi|255991766|gb|EEU01866.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|316939925|gb|ADU73959.1| NusG antitermination factor [Clostridium thermocellum DSM 1313]
Length = 185
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V S E+K + + R L+ ++ IP + ++ + G R FPGY
Sbjct: 3 WYVLFVKSGKERKVEQYL-----RKELNADISIPFIPLQEILFKKAGSVKKEIRPLFPGY 57
Query: 65 VLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++++ +++ + I + +I L + + +SE + +++ S
Sbjct: 58 VFVESMLPGRDFLEEIKYLINRSSDIISLLKYSDTEIAMRESERQRLLSLCNNNYCIEAS 117
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+++ + DGP +VK ++ + +E+ I G V V +A V K+
Sbjct: 118 YGIIE-GDKILIFDGPLKGMESLVKKINRHRREALIEIEIMGDVRLVTVALEVVRKV 173
>gi|77459037|ref|YP_348543.1| transcription antitermination protein nusG [Pseudomonas fluorescens
Pf0-1]
gi|77383040|gb|ABA74553.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf0-1]
Length = 178
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P WY++Q +++A L+ +++V + SERV+ +G++ + FP
Sbjct: 9 PNWYLLQCKPRQDERA------HLNLLQQNYVVFHPQLVSERVI---RGKRQRVQESLFP 59
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSSV 121
GY+ I+ + D + ++ T V F+ P+ V + IEH+ + +E+ + P ++
Sbjct: 60 GYLFIQ-LSRDDNWAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSEPDEAL 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE + + GP A G+ + RV + + R PV L + +E+
Sbjct: 119 --KPGENLQIVSGPLAPLEGVFLGL-HGTDRVMILLQFLNREQPVCLPLSVIER 169
>gi|281418039|ref|ZP_06249059.1| NusG antitermination factor [Clostridium thermocellum JW20]
gi|281409441|gb|EFB39699.1| NusG antitermination factor [Clostridium thermocellum JW20]
Length = 178
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V S E+ R + L ++ IP + V+ R G R FPGY
Sbjct: 3 WYVLFVKSGRERNV-----ERYLKKELKADISTPFIPLQEVLFKRSGSVKKEIRLLFPGY 57
Query: 65 VLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V I+++++ +++ + I + +I L + + +SE + +++ S
Sbjct: 58 VFIESILSGNEFLEEINYLIDRSSDIISLLKYSDTEIAMRESERQRLLSLCNNEHCIEAS 117
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+R+ + +GP IVK V+ K +E+ I G V +A V+K+
Sbjct: 118 YGIIE-GDRIRIFEGPLKGMESIVKKVNRHKREALIEIEIMGDARLVTVALEIVKKV 173
>gi|222148453|ref|YP_002549410.1| Transcription antiterminator protein [Agrobacterium vitis S4]
gi|221735441|gb|ACM36404.1| Transcription antiterminator protein [Agrobacterium vitis S4]
Length = 218
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRK-VNSERRFF 61
RW + S E+ + R LD E P ER R+G++ V +R F
Sbjct: 49 RWVVASCKSGMEQ---------VIRDSLDQQGIECWCPCERHKWPPRRGKQAVEIQRALF 99
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----- 116
GY+ +K + ++ + + K+ G +G P + + + +M + A ++
Sbjct: 100 RGYLFVKVIPDNEAFVGLMLASKLRGLMGKDGKPHLMPEPLMRQLMLSAKKAERKHMDVG 159
Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
P+ V +G++V + GPFA F V+ V ++ +V V+V +FG ++ + + +
Sbjct: 160 DVPPMPDV---LGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEITMGID 214
>gi|261886300|ref|ZP_06010339.1| transcription antitermination protein NusG [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 50
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V+ G FA+FNG V+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 4 VTKGRFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 50
>gi|256422616|ref|YP_003123269.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256037524|gb|ACU61068.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 174
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+ +N E+K + I +D + E +P R R E FP
Sbjct: 14 KWYVAYTRANFERKVAKDI--------VDQQI-EHYLPLRRETRKWSDRLKQIEVPLFPN 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K + KV I P V+ + P V++ EI+HI ++E Q ++
Sbjct: 65 YIFVKIKLQHKV--NILGIPGVLSLVSFSGQPVSVSEREIQHI-RKIEERGQDIALEYYY 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+RV ++ G F GI+ + R +++ + VE+ +Q+E+I
Sbjct: 122 CVGDRVRITQGIFTGMEGILLR-KSGQMRFVLKLPAISQAVSVEIEGDQLERI 173
>gi|157961221|ref|YP_001501255.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345]
gi|157846221|gb|ABV86720.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345]
Length = 173
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI-TIPSERVVSVRKGRKVNSERRFFPG 63
WY++ S E +A +++ L + T + T P E++V KG+ FP
Sbjct: 4 WYLLYCKSRGESRAQQNLA-------LQQIDTYLPTYPEEKLV---KGQSTVRRVLLFPS 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI------EH-IMNQVEAAVQR 116
Y+ + I +T VI +G E +P+ DS I EH +M+++
Sbjct: 54 YLFVHFDPEITSVAKIHNTRGVIRIVGCKELMTPIDDSIIHAIKMREHRLMSELSPIEAA 113
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
P E G++VC ++GPFA GI + EK R V + G+ V + + ++ +
Sbjct: 114 PTIEPEMERGDKVCFTEGPFAELEGIFDEANGEK-RCFVLFDLMGKQQRVAIKKDSIKPV 172
>gi|150388252|ref|YP_001318301.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|150389724|ref|YP_001319773.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|150392051|ref|YP_001322100.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149948114|gb|ABR46642.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149949586|gb|ABR48114.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149951913|gb|ABR50441.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 162
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
++ +P + R+G + ++ F GY+ + + Y+ +K P + FLG E P
Sbjct: 23 KVIVPQRIIPEKRQGETRHVKKILFTGYLFLNVELDVDTYYKLKRIPSIHRFLGL-EKPE 81
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ E++ ++ +S V + G +V V GP G + VD+ K R V
Sbjct: 82 AIPLEEMQRVLRLCNQGELIGLSKVIVKEGNKVQVVSGPLLGMEGHIIKVDKRKGRAKVC 141
Query: 157 VVIFGRVTPVELA 169
+ + G V+L
Sbjct: 142 LSVLGDAKTVDLG 154
>gi|15828653|ref|NP_326013.1| transcription antitermination protein NusG [Mycoplasma pulmonis UAB
CTIP]
gi|14089595|emb|CAC13355.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Mycoplasma pulmonis]
Length = 196
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-------SE 57
WY++ N EK+ +E+I ++ L+ ++ I E +S ++ K ++
Sbjct: 6 WYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDSYKTTK 65
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI---EHIMNQVE 111
+ + GY+ I+ V+T++ + +++T V G +G+ G P+P++ + + E
Sbjct: 66 KNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEEETKKE 125
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGI--VKNVDEEKSRVHVEVVIFGRVTPVELA 169
Q ++ F G V + DGPF + + +K + EK +E+ G+ ++
Sbjct: 126 EEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSVDTQID 185
Query: 170 YNQVEKI 176
+ ++ I
Sbjct: 186 HKHLKLI 192
>gi|71894376|ref|YP_278484.1| transcription antitermination protein [Mycoplasma synoviae 53]
gi|71851164|gb|AAZ43773.1| transcription antitermination protein [Mycoplasma synoviae 53]
Length = 202
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 20/193 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHL----VTE------ITIPSERVVSVRKGRK 53
RWY++ + E VE++ R+ ++ TE +PS + K +K
Sbjct: 7 RWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTELNKKQK 66
Query: 54 VNS----ERRFFPGYVLIKAVMTDKVYHTIKDTPKVI---GFLGTGENPSPVTDSEIEHI 106
+ + FPGY+ +KA M D V++ I++T +V G G GE P+PV+ ++I
Sbjct: 67 GLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQNQIRKS 126
Query: 107 MNQVEAA---VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ + E A + + + +VG+ V ++DG + +++ + E + + F +
Sbjct: 127 LEKEEEAKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNMAEISFEDFNKK 186
Query: 164 TPVELAYNQVEKI 176
++ + + +I
Sbjct: 187 VEFKINLDWLTRI 199
>gi|326487792|dbj|BAK05568.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 53/226 (23%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FF 61
P+W++V+V V+ I ++R + +I P+ +V K ++++ +
Sbjct: 107 PQWWLVRVSMAPGTDYVDLITKAVARR-FSEVSFKIYNPAIQVKKRLKSGLISTKSKPLH 165
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT------------------------------ 91
PG V + + +++ I+DT GF+G
Sbjct: 166 PGLVFLYCTLNKELHDFIRDTEGCYGFIGATRGSIKRQIKKPKPIPAEEVESIIKKEKEE 225
Query: 92 -----------------GENPSPVTDSE---IEHIMNQVEAAVQRPVSSV-FFEVGERVC 130
G PV DSE I I QV+ + + SS F +G V
Sbjct: 226 QEKVDKEFEDLENWNNVGSFSKPVEDSELMLINKIKKQVKKSTSKGASSNDTFTLGASVH 285
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GPFA F G + V + +V V++ +FG+ + V+L ++Q+E +
Sbjct: 286 VLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 331
>gi|240047307|ref|YP_002960695.1| transcription antitermination protein NusG [Mycoplasma conjunctivae
HRC/581]
gi|239984879|emb|CAT04872.1| Transcription antitermination protein [Mycoplasma conjunctivae]
Length = 184
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLD---HL--VTEITIPSERVVSVRKGRKVNSERRFF 61
++ SN E A+ + R+ G + H + + +P + +K+ + +
Sbjct: 1 MISTISNKEDTAITLLKNRIEHEGPEMKAHFKEIIKFDVPYYAEKENTQEKKIKYQN-LY 59
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV---- 114
GY IK M D+ ++ +++T + G +G+ G P+P++D + + + E +
Sbjct: 60 KGYFFIKMDMNDQAWYIVRNTQYITGLVGSHGRGAKPTPISDRHFKKMKDNWEQIINDFK 119
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQV 173
Q ++ ++ + V + DGPF G V + +++ + VE+ +FG+ Y V
Sbjct: 120 QYKGITLKIKIDDLVKIIDGPFNGDIGRVVAISDDRKVIDVELDNVFGKKAITSFDYKVV 179
Query: 174 EKI 176
EK
Sbjct: 180 EKF 182
>gi|330446599|ref|ZP_08310251.1| transcriptional activator RfaH [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490790|dbj|GAA04748.1| transcriptional activator RfaH [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 165
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ E L R G+D ++T V + +G++ S FP Y
Sbjct: 4 WYLLY----CKRSEQERAVINLDRQGVDCYYPQVT-----VQKITRGKRAESIEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + Y +++ T V F+ G P V + I ++M ++A + + S+ +
Sbjct: 55 VFVHFDPEVVSYTSVRSTRGVADFIRCGTFPQKVREELIYNLMMNEDSAEHQRLLSMLPQ 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
GE++ + G F I + D EK R + + + G+
Sbjct: 115 PGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGK 151
>gi|198445322|gb|ACH88387.1| NusG [Candidatus Liberibacter asiaticus]
Length = 25
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/25 (100%), Positives = 25/25 (100%)
Query: 153 VHVEVVIFGRVTPVELAYNQVEKIV 177
VHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 1 VHVEVVIFGRVTPVELAYNQVEKIV 25
>gi|218778281|ref|YP_002429599.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
gi|218759665|gb|ACL02131.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
Length = 178
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 16/175 (9%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY + S E + R E P R++S RK R+ + F
Sbjct: 9 TKQWYALYTKSRHEACVNNYLAAR---------SIESFYPQMRILSRRKDRRKMIDVPMF 59
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE--HIMNQVEAAVQRPVS 119
PGY+ ++A + + + +I P + +G + + I I++Q EA P
Sbjct: 60 PGYLFVRAALRSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSLRIVSQKEALETGPC- 118
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ V + GPFA G+ ++ ++ V + G+ VE+ V+
Sbjct: 119 ---YHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169
>gi|85714631|ref|ZP_01045618.1| transcriptional antitermination protein, putative [Nitrobacter sp.
Nb-311A]
gi|85698516|gb|EAQ36386.1| transcriptional antitermination protein, putative [Nitrobacter sp.
Nb-311A]
Length = 170
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQ + + E KA L R G E+ +P R + FP
Sbjct: 7 QWYVVQTHPHAEGKA----AAHLRRQGF-----EVYLPRYARRRRHARRVDITASPLFPR 57
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSSV 121
Y+ + + + + I+ T V + +G+ P+PV D + + + ++ VQ ++
Sbjct: 58 YLFVAIDLVHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAP- 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F G+ V V DG F+ G+ +++ + RV V + + GR V + + +E
Sbjct: 117 RFSAGDTVRVVDGAFSDCLGLFESM-SDGERVLVLLDLLGRKVRVTMDIDTIE 168
>gi|90579282|ref|ZP_01235092.1| transcriptional activator RfaH [Vibrio angustum S14]
gi|90440115|gb|EAS65296.1| transcriptional activator RfaH [Vibrio angustum S14]
Length = 165
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ E L R G+D ++T V V +G+++ S FP Y
Sbjct: 4 WYLL----YCKRSEQERAVINLDRQGVDCYYPQVT-----VKKVSRGKRIESIEPLFPSY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ Y +++ T V F+ G P V + I ++M ++ + + S+
Sbjct: 55 VFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEEHQRLLSMLPL 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
GE++ + G F I + D EK R + + + G+
Sbjct: 115 PGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGK 151
>gi|56459699|ref|YP_154980.1| transcription antiterminator RfaH [Idiomarina loihiensis L2TR]
gi|56178709|gb|AAV81431.1| Transcription antiterminator RfaH [Idiomarina loihiensis L2TR]
Length = 165
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 15/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIV+ E++A+ + L G E+T V VR+G + + R FPGY
Sbjct: 9 WYIVRTKPKQEERAILN----LENQGFGVFAPELT-----VKKVRRGVRTSVVERMFPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V +K + ++ ++ T V G L G+N V I+ + V + +
Sbjct: 60 VFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQM-----RGVDQLTDEQAPQ 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+G+ V + GPF F + +D E SR V + + +Y +++
Sbjct: 115 IGDTVEIQQGPFRGFLAKIVKLDGE-SRCFVMLEWMQKEVKANFSYKELQ 163
>gi|94967916|ref|YP_589964.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
gi|94549966|gb|ABF39890.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
Length = 182
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF--FP 62
W+ VQ EK+ E RL +S + E +P R V R +N+E FP
Sbjct: 14 WFAVQTRHRHEKRVAE----RLRQSEI-----ETFLPIHRAVH-RWKNGINAEVNLPLFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ + + ++ + P VI + +P+P+ D+EI + E+ P F
Sbjct: 64 GYLFTRLRGSQRI--PLLREPGVIAIAASSNSPTPIGDNEIAQLRLVAESVKAEP--HPF 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G++V V GP GI+ E RV V V I R V+++ ++E +
Sbjct: 120 LAIGQQVKVVAGPLFGMEGILIRKKSE-YRVVVSVKIIMRSVAVDVSELEIEPV 172
>gi|85712703|ref|ZP_01043748.1| Transcription antiterminator RfaH [Idiomarina baltica OS145]
gi|85693435|gb|EAQ31388.1| Transcription antiterminator RfaH [Idiomarina baltica OS145]
Length = 165
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ E +A+E+ L+R G + ++ + ER++ +G++ FPGY
Sbjct: 9 WYVLKTKPRQEDRALEN----LARQGFNSFGPKLAV--ERIL---RGKRTVRTEPMFPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSSVFF 123
+ +++ ++ ++ T V + G+ + S I+ I + A Q P
Sbjct: 60 IFVQSDELATQFYKLRSTYGVHSVVRFGDRIPKLPQSWIDSIRGMEASAETQAP------ 113
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
EVG++V +++GPF F V +D E SR V + + ++Y++++
Sbjct: 114 EVGDQVEITEGPFKGFLAKVVALDGE-SRCFVLLEWMQKEVKASMSYSELQ 163
>gi|116625224|ref|YP_827380.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116228386|gb|ABJ87095.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 193
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
L+H E P + R+ + + + FPGYV + + + + TP V G +
Sbjct: 35 ALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFAR--IDVRFRLPVLVTPGVRGIV 92
Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDE 148
G G P+PV D EI + +++ Q P S + G+RV + +GP + G++ +
Sbjct: 93 GYGRQPAPVDDGEIFALRRVMQS--QLPAKSAPYLRTGDRVQLVEGPLSGLTGLLIQ-QK 149
Query: 149 EKSRVHVEVVIFGRVTPVEL 168
+RV V+V + + V++
Sbjct: 150 GANRVLVQVTLINQALAVDV 169
>gi|75675741|ref|YP_318162.1| transcription antitermination protein nusG [Nitrobacter
winogradskyi Nb-255]
gi|74420611|gb|ABA04810.1| Transcription antitermination protein nusG [Nitrobacter
winogradskyi Nb-255]
Length = 234
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 20/187 (10%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE-R 58
M P+ W+I++ + CE+K + R + S L+ + +RVV G E +
Sbjct: 30 MQPKYWFILRTHPGCERKVMREFE-RRNISAYCPLIAK----QQRVVRRVHGSSWTYEIK 84
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------- 111
R + + V D V G+L G + + SE E ++V
Sbjct: 85 RLVQVPLFPQLVFVPDFERVPADIGGVSGWLRFGGWRARIP-SEREATSDRVACMADIHA 143
Query: 112 --AAVQRPVS--SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
A P S + FE+G V + DGPF F+G ++ +D K R+ V + IFGR++P E
Sbjct: 144 LVAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLD-SKGRLKVAIEIFGRLSPTE 202
Query: 168 LAYNQVE 174
++ Q+E
Sbjct: 203 MSEAQIE 209
>gi|159184310|ref|NP_353481.2| transcription antitermination protein [Agrobacterium tumefaciens
str. C58]
gi|159139634|gb|AAK86266.2| transcription antitermination protein [Agrobacterium tumefaciens
str. C58]
Length = 188
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 28/187 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNS-ERRFFP 62
W++V+ EK AVE L ++G+ ++ +P E + +V +GR + + R P
Sbjct: 15 WFVVETKHKAEK-AVEDA---LRKAGV-----KVFLPLETIGETVVRGRIIPAVSRPLLP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+ V + I V GF+G +P V+D E MN+ +A +
Sbjct: 66 GYVLVNIVYSPAAVCGIARLEGVAGFVGGMVHPHRVSDEE----MNRFKAFGDDETAPDV 121
Query: 123 -----FEVGERVCVSDGPFASFNGIV------KNVDEEK--SRVHVEVVIFGRVTPVELA 169
F+ G++V GPFASF G + + VD E+ + V V +FG+V+ +E
Sbjct: 122 KHCEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAP 181
Query: 170 YNQVEKI 176
+E++
Sbjct: 182 LALLEQL 188
>gi|189347084|ref|YP_001943613.1| NusG antitermination factor [Chlorobium limicola DSM 245]
gi|189341231|gb|ACD90634.1| NusG antitermination factor [Chlorobium limicola DSM 245]
Length = 184
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + R L+ V E +P RK F GY
Sbjct: 10 WYAVYVRSRYEKK--------VHRMFLEKEV-EAFLPLLETWRQWSDRKKKVSEPLFRGY 60
Query: 65 VLIKAVMTDKVYH-TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSSV 121
V + M K H + DT V+ F+G G+ PS ++ +I+ I V AV+R V+S+
Sbjct: 61 VFVNIDM--KAEHIKVLDTDGVVKFIGIGKTPSVISSRDIDWIKKLVREPDAVRRIVASL 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
G++V V+ GPF G+V E SR+ VV F R+
Sbjct: 119 --PPGQKVMVTAGPFKGLEGVVVKEGRE-SRL---VVYFDRI 154
>gi|315647771|ref|ZP_07900872.1| putative transcription antitermination protein [Paenibacillus
vortex V453]
gi|315276417|gb|EFU39760.1| putative transcription antitermination protein [Paenibacillus
vortex V453]
Length = 192
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 34/197 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE-RRFFPG 63
WY + V K ES R + D+ + IP +R V +K R V + FPG
Sbjct: 3 WYALFV-----KTGYESSIKRWLDTRFDNNLLHSVIP-KRKVPEKKDRTVQHVIKTLFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTP---KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
YV I+ M+ +Y+T+K+ P + +L + S + D ++ + ++ AA
Sbjct: 57 YVFIETKMSFSIYYTLKENPFIYNTLNYLNNKDKRSTLPDVQMASVASERPAAESHFFKE 116
Query: 117 -------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
S V+F+ +V V GP +K VD+ K R V +
Sbjct: 117 IPSEEMLVVLQLINENEVIEYSQVYFQ-DSKVIVQSGPLKGLESHIKKVDKHKKRAKVLM 175
Query: 158 VIFGRVTPVELAYNQVE 174
I G+ V++ +E
Sbjct: 176 NIMGKEQLVDVGIEIIE 192
>gi|153001420|ref|YP_001367101.1| transcriptional acivator RfaH [Shewanella baltica OS185]
gi|217972648|ref|YP_002357399.1| transcriptional acivator RfaH [Shewanella baltica OS223]
gi|151366038|gb|ABS09038.1| transcriptional acivator RfaH [Shewanella baltica OS185]
gi|217497783|gb|ACK45976.1| transcriptional acivator RfaH [Shewanella baltica OS223]
Length = 168
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++GRK FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGRKQVCRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ + ++
Sbjct: 55 LFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKELTPSQTVLAEALEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R HV I G++ V + VE+I
Sbjct: 115 KTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPQQSVERIC 167
>gi|160915636|ref|ZP_02077844.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991]
gi|158432112|gb|EDP10401.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991]
Length = 182
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR--FFP 62
WY+VQV S EK+ E +S + ++TE IP + RK V + + F
Sbjct: 15 WYVVQVRSGHEKQIAEKCRTMIS----NDILTECFIPE--YIHKRKFSGVWHDVKDVLFK 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP-SPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + D +Y +K P + +G + P+ + EI M S+
Sbjct: 69 GYVFMITDKIDLLYSELKKIPDFVKVIGKKQAEIYPLDEDEIA-FMKSFGKKGHIVDMSI 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+++ +++GP G++ +D K ++ + +F + T ++ + K
Sbjct: 128 GFIRGDKIYITEGPLQGKEGLIVKIDRHKRIAYLRLSMFNKETTTKVGLEIISK 181
>gi|332181380|gb|AEE17068.1| hypothetical protein Trebr_1645 [Treponema brennaborense DSM 12168]
Length = 175
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR----F 60
+Y + V + E+K +S+ L + + + R+ ++K ++ S R F
Sbjct: 3 FYCISVRTGMEEKFRQSV--------LTFVEGDERVLCGRLHILKKRMRLKSGREYFESF 54
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPK-VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYV ++ +D K + FL + P+ S+ E + ++ +
Sbjct: 55 FPGYVFLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIV 114
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F+ G+R+ + + PF F+G V V+ R+++E+ V V L Y +V K
Sbjct: 115 PVTFDKGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170
>gi|332181956|gb|AEE17644.1| hypothetical protein Trebr_2235 [Treponema brennaborense DSM 12168]
Length = 175
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR----F 60
+Y + V + E+K +S+ L + + + R+ ++K ++ S R F
Sbjct: 3 FYCISVRTGMEEKFRQSV--------LTFVEGDERVLCGRLHILKKRMRLKSGREYFESF 54
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPK-VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYV ++ +D K + FL + P+ S+ E + ++ +
Sbjct: 55 FPGYVFLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIV 114
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F+ G+R+ + + PF F+G V V+ R+++E+ V V L Y +V K
Sbjct: 115 PVTFDKGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170
>gi|330831026|ref|YP_004393978.1| transcriptional activator RfaH [Aeromonas veronii B565]
gi|328806162|gb|AEB51361.1| Transcriptional activator RfaH [Aeromonas veronii B565]
Length = 166
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+ E +A R+ LD E P + +R+G++V FP
Sbjct: 3 KWYLAYCKPKEEARA---------RAHLDAQGIESYYPMVEIEKLRRGKRVPVREPMFPN 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I + + T+K T + + G +P++ + +M++ ++ R +
Sbjct: 54 YLFIFVDLEEVTPVTLKSTRGISRIIHFGSEWTPISSKLVYQLMSRDDSDEARASYASLP 113
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G++V + +GP A F I D EK R + V + R T
Sbjct: 114 CSGDKVLIEEGPLAGFEAIYMEPDGEK-RAILLVSLLNRET 153
>gi|170744011|ref|YP_001772666.1| NusG antitermination factor [Methylobacterium sp. 4-46]
gi|168198285|gb|ACA20232.1| NusG antitermination factor [Methylobacterium sp. 4-46]
Length = 225
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P+P+ + + + + V +V +G+ V V+ GP A+ G ++ VD + R
Sbjct: 137 PAPILQAFADALAGRAGEGEDEAVEAVLLALGDAVRVTRGPLAALRGTIEAVDPARRRYR 196
Query: 155 VEVVIFGRVTPVELAYNQV 173
V + +FGR T V+LA +V
Sbjct: 197 VALGLFGRATRVDLAAEEV 215
>gi|121999044|ref|YP_001003831.1| NusG antitermination factor [Halorhodospira halophila SL1]
gi|121590449|gb|ABM63029.1| transcription antitermination protein nusG [Halorhodospira
halophila SL1]
Length = 175
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP Y+ I+ + + I+ T V G + G P+ V D ++ I ++E ++
Sbjct: 62 FPRYLFIRLAAGLEDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDG-HCDLAP 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GERV V DGPF S+ GI + RV + + + G+ T + ++ +Q+E+
Sbjct: 121 EPLQPGERVRVLDGPFQSYEGIFR-ASRSDERVMILLDVAGQHTTLTVSQHQIER 174
>gi|319952677|ref|YP_004163944.1| transcription antitermination protein nusg [Cellulophaga algicola
DSM 14237]
gi|319421337|gb|ADV48446.1| transcription antitermination protein nusG [Cellulophaga algicola
DSM 14237]
Length = 157
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 11/151 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V V S EKK E L + E+ P + V RK E F Y
Sbjct: 3 WYVVYVQSKKEKKVAEI---------LQKMQIEVYCPLIKEVKQWSDRKKTIESPLFKSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ + DK + D P V+ +L P+ V D EI I +E ++
Sbjct: 54 VFVR--LHDKERSNVFDVPGVVRYLFWLGQPAIVRDEEIAIIKKWLEDDTIEEITLHKLL 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G+ + + +GP I++ V +++ R+ +
Sbjct: 112 PGDEILIKNGPLKDKKAIIQEVGKKRIRLAI 142
>gi|116750229|ref|YP_846916.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|116699293|gb|ABK18481.1| transcription antitermination protein nusG [Syntrophobacter
fumaroxidans MPOB]
Length = 207
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + V EK + RL + +D +P S R+ R+ FPGY
Sbjct: 36 WFALYVQVKHEKDIIR----RLEQKDVDCF-----LPLMECWSKRRDRRKRITVPLFPGY 86
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + V+ + I TP + + E P P+ +I + + + A Q + +
Sbjct: 87 VFVYTVLDNYTNVDILKTPGAVNIVRNSEGPLPIPSYQIRN-LRTILGASQSIELHPYLK 145
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
GE V V GP GI+K ++ R+ V V R VEL VE
Sbjct: 146 EGECVRVVRGPLNGCVGILKRHSPKQGRLVVRVDCIQRSVSVELDVEDVE 195
>gi|160876145|ref|YP_001555461.1| transcriptional acivator RfaH [Shewanella baltica OS195]
gi|160861667|gb|ABX50201.1| transcriptional acivator RfaH [Shewanella baltica OS195]
gi|315268341|gb|ADT95194.1| transcriptional acivator RfaH [Shewanella baltica OS678]
Length = 168
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++GRK FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGRKQVCRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ + ++
Sbjct: 55 LFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEALEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R HV I G++ V + VE++
Sbjct: 115 KTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPEQSVERVC 167
>gi|91203041|emb|CAJ72680.1| similar to transcription antitermination protein NusG [Candidatus
Kuenenia stuttgartiensis]
Length = 169
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ V S EK+ V+S + S +P + +S R+ RK + FPGY
Sbjct: 8 WFAVHTRSRHEKQ-VDSFLREKNISSF--------LPLVKTISRRRDRKKFIDVPLFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
+ + + D +Y IK T V+ +G ++ PSP+ D+EI ++ + + V P
Sbjct: 59 LFVNITL-DNLYE-IKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLINSNVAIDPYK-- 114
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G +V V GP G++ + RV V + I + T E++ +E I
Sbjct: 115 YLQKGTKVRVVSGPLIGLEGLLVK-RKTNYRVVVSIDILQKSTSAEISIADIESI 168
>gi|218672066|ref|ZP_03521735.1| transcription antitermination protein NusG [Rhizobium etli GR56]
Length = 31
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+DEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 1 MDEERSRLKVEVSIFGRATPVELEYAQVEKV 31
>gi|88608554|ref|YP_506561.1| putative transcription termination/antitermination factor NusG
[Neorickettsia sennetsu str. Miyayama]
gi|88600723|gb|ABD46191.1| putative transcription termination/antitermination factor NusG
[Neorickettsia sennetsu str. Miyayama]
Length = 176
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +++V S E K + I R S +D + ++ +RF PGY
Sbjct: 12 WCVLRVRSGSESKVCDLIKSRCSDEVVDLFSPALV-----------KFDASASKRFLPGY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIG----FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
V +K V I + G FL +P ++D +I+ + N + + P S
Sbjct: 61 VFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLSPEVTPESG 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG RV + F + G V +DE S+ V++V G+ V +Q++ +
Sbjct: 121 KI-SVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 175
>gi|116623748|ref|YP_825904.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116226910|gb|ABJ85619.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 179
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ V+V SN EKK+ + L G + PS R S R KV ++ FPGY
Sbjct: 20 WFAVKVRSNFEKKSADI----LREKGYQEFAP--SYPSRRYWSDRV--KV-IDQPLFPGY 70
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-FF 123
V + + + T V+ +G G +PV + E+ + + +++ P+S F
Sbjct: 71 VFCR--FHPNHFLPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSL--PISQREFL 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG +V + GP A GI++ + + R+ V + + R E+ N V +
Sbjct: 127 HVGRKVLIRRGPLAGVEGILEEI-RKGYRIVVSISLLQRSVTAEIDANWVTTV 178
>gi|307302360|ref|ZP_07582118.1| NusG antitermination factor [Shewanella baltica BA175]
gi|306914398|gb|EFN44819.1| NusG antitermination factor [Shewanella baltica BA175]
Length = 168
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++GRK FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGRKQVCRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ A ++
Sbjct: 55 LFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEALEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R H+ I G+V V + ++++
Sbjct: 115 KTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRVC 167
>gi|125588461|gb|EAZ29125.1| hypothetical protein OsJ_13188 [Oryza sativa Japonica Group]
Length = 390
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
PV DSE+ +MN+++ ++P+S F G V V GPF F G + V+ +
Sbjct: 305 PVEDSEL-MLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSLLEVNRKNK 363
Query: 152 RVHVEVVIFGRVTPVELAYNQVEKI 176
+ +++ +FG+ + V+L ++Q+E +
Sbjct: 364 KATLQLTLFGKESFVDLDFDQIEAV 388
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+W++V+V V+ + +SR + IP E V S+ + K ER
Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRRK-RQIKKPKPIPVEEVESIIREEKEEQER---- 158
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
D+ + +++ V F PV DSE+ +MN+++ ++P+S
Sbjct: 159 ---------VDREFEEMENGGIVESF------NKPVEDSEL-MLMNKIKRQFKKPISKGG 202
Query: 121 ---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
F G V V GPF F G + V+ + +V + ++
Sbjct: 203 SNHNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKVRLMII 243
>gi|330888816|gb|EGH21477.1| transcriptional activator RfaH [Pseudomonas syringae pv. mori str.
301020]
Length = 170
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + R H + + ++ + +V ++ FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHL-----RRQHFHCYRPLQVDVKKTAA-----RVQADEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I+ ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLSTPAPKARF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ G ++ I + D
Sbjct: 115 IQGDPVMITTGSWSDVEAIFLSED 138
>gi|304409927|ref|ZP_07391546.1| NusG antitermination factor [Shewanella baltica OS183]
gi|304351336|gb|EFM15735.1| NusG antitermination factor [Shewanella baltica OS183]
Length = 168
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++GRK FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGRKQVCRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ A ++
Sbjct: 55 LFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPAQTVLAEALEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R H+ I G+V V + ++++
Sbjct: 115 KTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRVC 167
>gi|116783316|gb|ABK22888.1| unknown [Picea sitchensis]
Length = 379
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS--GLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+W+++ V N E+ E + ++ IPS R ++ G S++R F
Sbjct: 80 QWWMLLVPRNSERLVAEDLSKAFPSEFPDIEFQAYLPEIPSRR--KLKNGSYSESKKRMF 137
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGE------NPSPVTDSEIEHIMNQVE 111
PGY+ I+ + +++ I++TP+V GF+G G P PV +E+E +V+
Sbjct: 138 PGYLFIRCPLNKEIHDFIRNTPRVRGFVGRKVGSMIRQMIKPKPVPIAEMEETFRKVK 195
>gi|296445155|ref|ZP_06887115.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
gi|296257329|gb|EFH04396.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
Length = 183
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY+VQ E V + + R+ L + I RK R V + F
Sbjct: 20 TRRWYVVQTRPQREAGVVLQLEAQNFRAFLPRVTRTIR-------HARKLRMVQAP--VF 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ + + + ++ T +G + + P+P +E +++ +A +
Sbjct: 71 PGYLFVSLDLQRDRWRSVNGTFGAVGLIMGDDYPAPTPHGVVEQLLSCADAR-----GAC 125
Query: 122 FFEV----GERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++ G++V V GPFA G +V+ D E RV V + I G PV L + + +
Sbjct: 126 RFDLDLAEGQKVKVLAGPFADAIGSLVRLGDNE--RVQVLLDIMGGRVPVTLERSALAAV 183
>gi|257791627|ref|YP_003182233.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|257475524|gb|ACV55844.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
Length = 170
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + E I + D ++ E +P V +G+ FPGY
Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+++ D++ ++ P L P+ E+ I E + S
Sbjct: 58 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ V GP G ++ ++ K ++E+ +FGR ++ V K
Sbjct: 118 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168
>gi|237799523|ref|ZP_04587984.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022379|gb|EGI02436.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 166
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R + R + R V E FPG
Sbjct: 9 RWYLIQTKPRQEARAAEH----LQRQHFE---------CYRPLQATAKRTVAREA-LFPG 54
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I+ ++ I+ T V + G P PV D+ IE I ++ A P + F
Sbjct: 55 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGQPVPVRDALIEQIRQRLSA----PSADTRF 110
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ G ++ I D
Sbjct: 111 TRGDIVLINTGSLSAVEAIFLTAD 134
>gi|269102125|ref|ZP_06154822.1| transcriptional activator RfaH [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162023|gb|EEZ40519.1| transcriptional activator RfaH [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 10/166 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ C++ E L R G+ E P R+ + +G+K
Sbjct: 35 MMKGWYLLY----CKRSEQERAVINLDRQGV-----ECYYPQVRIDKIVRGKKQEVLEPL 85
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP YV + Y +I+ T V F+ G P V I +M + +
Sbjct: 86 FPSYVFVYFDPEQVSYTSIRSTRGVADFIRRGSTPQLVQQELIYQLMMNEDCDEHKEALC 145
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ G+ + +S G F + I + D EK R + + + GR V
Sbjct: 146 ELPKPGDSLTLSQGQFKGIDAIYQEADGEK-RSFMLINLLGRAVTV 190
>gi|261885758|ref|ZP_06009797.1| transcription antitermination protein NusG [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 77
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + G++ + E+ +P+E V+ ++ G++ +E
Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINEESL 60
Query: 61 FPGYVL 66
+PGY
Sbjct: 61 YPGYAF 66
>gi|126175096|ref|YP_001051245.1| transcriptional acivator RfaH [Shewanella baltica OS155]
gi|125998301|gb|ABN62376.1| transcription antitermination protein nusG [Shewanella baltica
OS155]
Length = 168
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE +GRK FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSHRGRKQVCRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ A ++
Sbjct: 55 LFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEALEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R H+ I G+V V + ++++
Sbjct: 115 KTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRVC 167
>gi|163757089|ref|ZP_02164194.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1]
gi|161322989|gb|EDP94333.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1]
Length = 188
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFPG 63
W+++ EKKA + L++ E+ +P + + + K R+ + FP
Sbjct: 29 WFVLYTAPRAEKKA---------KLELEYRGYEVFLPMTKSLRIWKNRQKKLIDSVLFPS 79
Query: 64 YVLIKAVMTDKVYHT-IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ +K TD+ Y I K+ ++ G P V+ IE I + + V + F
Sbjct: 80 YIFVK---TDERYLAEICRINKIATYIHCGGKPCKVSPECIEAIKCMLSMDQEISVGNDF 136
Query: 123 FEVGERVCVSDGPFASFNGI-VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V + +GP A +NG+ V+ + K +H++ + +V +E+ + +EK
Sbjct: 137 IE-GESVRIVEGPLAGYNGVLVQQKSKTKFGIHLKEI--NQVASIEICTSALEK 187
>gi|325833223|ref|ZP_08165729.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|325485605|gb|EGC88073.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 212
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + E I + D ++ E +P V +G+ FPGY
Sbjct: 44 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 99
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+++ D++ ++ P L P+ E+ I E + S
Sbjct: 100 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 159
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ V GP G ++ ++ K ++E+ +FGR ++ V K
Sbjct: 160 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 210
>gi|323483116|ref|ZP_08088508.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum
WAL-14163]
gi|323403536|gb|EGA95842.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum
WAL-14163]
Length = 249
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 24/194 (12%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY++QV E+K E I ++S H++ E IP + V +GR E F
Sbjct: 47 TDMWYVIQVQGGQEEKTAELIRSQVS----AHVMEECFIPKKERVKKFRGRWQRVEEILF 102
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------------------NPSPVTDSEI 103
PGYV ++++ +K+ ++ L G + +T
Sbjct: 103 PGYVFTVTDKPEELFLELKNVLRLTKILQDGAFYFIPLSKEEETLIQSIGDNCHITRISR 162
Query: 104 EHIMNQVEAAVQRPV--SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ ++E A + V ++ E G + + DGP + G + + K V++ G
Sbjct: 163 VQVKKKIEPAAKTEVVFNNRMLESGREIMIIDGPLKNQEGRIVKYNLHKREATVKLRFMG 222
Query: 162 RVTPVELAYNQVEK 175
+ LA VE+
Sbjct: 223 NEMELRLAIELVEE 236
>gi|224369771|ref|YP_002603935.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium
autotrophicum HRM2]
gi|223692488|gb|ACN15771.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium
autotrophicum HRM2]
Length = 174
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
E+ +P + S RK RK+ + FPGY+ + + + ++ T + LG P
Sbjct: 30 EVFLPKIKKRSQRKDRKLMIDVPLFPGYLFVNITLDPVTHLSVVKTTGAVRLLGYSSGPV 89
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
PV + IE + V VS + GERV V GPF+ G + K RV
Sbjct: 90 PVPSAHIES-LKIVTGTGLDVVSGTINTLQKGERVLVVRGPFSGVKGEFLR-HKGKDRVI 147
Query: 155 VEVVIFGRVTPVELAYNQVE 174
+++ G+ VE+ +E
Sbjct: 148 IKIETLGQFAGVEIDREDLE 167
>gi|242037557|ref|XP_002466173.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor]
gi|241920027|gb|EER93171.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor]
Length = 334
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 53/228 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
+ P+W++V+V V+ + +SR + +I PS +V K ++ + +
Sbjct: 99 LGPQWWLVRVSMAPGTDYVDLLTKAISRR-YPEVTFKIYNPSIQVKRRLKSGAISVKSKP 157
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHI----- 106
PG V + + +++ I+DT GF+G + P P+ E+E I
Sbjct: 158 LHPGLVFMHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPIDEVESIIREEK 217
Query: 107 ---------------------------------MNQVEAAVQRP-----VSSVFFEVGER 128
MN+++ ++ F G
Sbjct: 218 EEQERVDREFEEMENMGNVEPFSKPVEESELMLMNKIKKQFKKSSLNGGTRHSAFSPGAT 277
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V GPF F G + V+ + + V++++FG+ + V+L ++Q+E I
Sbjct: 278 VHVLSGPFEDFTGSILEVNRKNKKATVQLILFGKESFVDLDFDQIEAI 325
>gi|311697218|gb|ADQ00090.1| transcriptional activator RfaH [marine bacterium HP15]
Length = 145
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 41 PSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD 100
P V VR G++ F GY+ IK ++ ++ ++ T ++ +G G P+ +
Sbjct: 14 PKILVEKVRSGKRTQRLEPLFAGYLFIKLKPGEQNWNKLRSTRGILRIVGFGNTPATIDQ 73
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ +++Q+ A + + + G+ V + DGPF N I + D ++ V
Sbjct: 74 T----VIDQINARLASVTTQGGLKSGQAVELDDGPFKGLNAIFQCYDGDERAV 122
>gi|89073226|ref|ZP_01159756.1| transcriptional activator RfaH [Photobacterium sp. SKA34]
gi|89050936|gb|EAR56400.1| transcriptional activator RfaH [Photobacterium sp. SKA34]
Length = 165
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ E L R G+ ++T V V +G+++ S FP Y
Sbjct: 4 WYLL----YCKRSEQERAVINLERQGVGCYYPQVT-----VKKVSRGKRIESIEPLFPSY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ Y +++ T V F+ G P V + I ++M ++ + + S+ +
Sbjct: 55 VFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEKHQRLLSILPQ 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
G+ + + G F I + D EK R + + + G+
Sbjct: 115 PGDTLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGK 151
>gi|254797036|ref|YP_003081873.1| putative transcription termination/antitermination factor NusG
[Neorickettsia risticii str. Illinois]
gi|254590275|gb|ACT69637.1| putative transcription termination/antitermination factor NusG
[Neorickettsia risticii str. Illinois]
Length = 173
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +++V S E K + I R S +D L + I + ++ +RF PGY
Sbjct: 9 WCVLRVRSGSESKVCDLIKSRCSDKVVD-LFSPALIRFD----------ASASKRFLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIG----FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ IK + + + G FL +P ++D +I+ + N + + P S
Sbjct: 58 IFIKVAPGSTFLNEVSIMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLSPEVAPESG 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG RV + F + G V +DE S+ V++V G+ V +Q++
Sbjct: 118 KI-SVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLK 170
>gi|300309822|ref|YP_003773914.1| transcription activator protein [Herbaspirillum seropedicae SmR1]
gi|300072607|gb|ADJ62006.1| transcription activator protein [Herbaspirillum seropedicae SmR1]
Length = 165
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 24/181 (13%)
Query: 4 RWYIVQVYSN---CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+WY+V C ++ +E G E +P VR+G S
Sbjct: 2 QWYLVHTKPRQEVCAQQNLEQQG------------YECYLPLLHKEKVRRGALTLSSEAL 49
Query: 61 FPGYVLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQR 116
FP Y+ I+ A +T K + I+ T V + G P+ +++ + + Q EAA
Sbjct: 50 FPRYLFIRLGAGLTSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQAAQQSEAA--- 106
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
PV F G+RV + +G + GI D E+ RV V + + + V +A + KI
Sbjct: 107 PVERAFTP-GQRVQLVEGALSGIEGIFLEADGER-RVMVLIEMLSKPVSVAVAPGSLRKI 164
Query: 177 V 177
+
Sbjct: 165 L 165
>gi|108761995|ref|YP_632130.1| NusG-like protein [Myxococcus xanthus DK 1622]
gi|4164406|emb|CAA09920.1| NusG-like protein [Myxococcus xanthus]
gi|108465875|gb|ABF91060.1| NusG-like protein [Myxococcus xanthus DK 1622]
Length = 168
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + V N EK A +G + G + + T P K V ++ FPGY
Sbjct: 11 WVALLVRVNHEKVAAAQLG----KHGYEFFLPTYTPP--------KSSGVKAKLPLFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFF 123
+ + + + I P VI LG P V E+E I ++ V P +
Sbjct: 59 LFCRYQPLNP--YRIVRAPGVIRLLGGDAGPEAVPAQELEAIRRVADSGVSSNPCD--YL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+RV + +GP G + + + R V V + R VE++ Q+E I
Sbjct: 115 RVGQRVRIIEGPLTGLEGSLVT-SKSQLRFIVSVGLLQRSVSVEVSAEQLEPI 166
>gi|120598282|ref|YP_962856.1| NusG antitermination factor [Shewanella sp. W3-18-1]
gi|120558375|gb|ABM24302.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1]
Length = 168
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ IK + + T V + E +P+ D I I M + ++
Sbjct: 55 LFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GER+ DGPF GI + K R HV + G+V + + +E++
Sbjct: 115 KMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERVC 167
>gi|194335749|ref|YP_002017543.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
gi|194308226|gb|ACF42926.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
Length = 196
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + + L+ V +P RK F GY
Sbjct: 9 WYAVYVRSRYEKKVYQLL--------LEQGVVSF-LPLLDTWKQWSDRKKRVSEPLFRGY 59
Query: 65 VLIKAVMTDKVYHTIK--DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSS 120
V + D V I+ DT V+ F+G G PS + +I+ + V A+ R V S
Sbjct: 60 VFVN---IDLVREKIRVLDTEGVVKFIGIGRVPSVIVQRDIDWLKQLVREPDAIHRHVVS 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV--------HVEVVIFGRV-TPVELAYN 171
+ G+RV V GPF F G+V E V VEV IF V P+ +A +
Sbjct: 117 L--PAGQRVKVLAGPFKDFEGVVVKQGRESRLVVFFESIMQGVEVTIFPDVLAPIAVAPS 174
Query: 172 QVEKI 176
V+ +
Sbjct: 175 PVQGV 179
>gi|308271745|emb|CBX28353.1| hypothetical protein N47_G36770 [uncultured Desulfobacterium sp.]
Length = 170
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ P WY++ S E E L + ++ + ++ + S RV RK+
Sbjct: 5 IKPSWYVIHTKSRFENVVHEG----LIKKNVESFLPKVLVRSRRV-----DRKIMIRVPL 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+ +K+ + + I T V+ +G P V D I + + A + +
Sbjct: 56 FPGYMFVKSDLRPERQIEIFKTVGVVRMVGNRSGPISVPDETIAS-LKIMTAGEGKIFTG 114
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V F G+ V V GPF G N + RV V++ G+ VE+ + +E
Sbjct: 115 VKFRKGDMVLVIRGPFEGVTGTF-NRHGKIGRVVVDIEALGQFASVEVDEDDIE 167
>gi|146293640|ref|YP_001184064.1| NusG antitermination factor [Shewanella putrefaciens CN-32]
gi|145565330|gb|ABP76265.1| transcription antitermination protein nusG [Shewanella putrefaciens
CN-32]
Length = 168
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ IK + + T V + E +P+ D I I M + ++
Sbjct: 55 LFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GER+ DGPF GI + K R HV + G+V + + +E++
Sbjct: 115 KMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERVC 167
>gi|295105769|emb|CBL03312.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 532
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ QV + E A + RL S ++ E +P + +G + R FPGY
Sbjct: 2 WYVAQVQAGRES-ATRDLCLRLVSS---DVLEECFMPEYETMWRVRGEWKLARRLLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS-PVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ +++ + P I LG EN P+T E + ++ ++ +S +
Sbjct: 58 LFFVTGDAEELNKELLRVPLPIRLLGNEENSFFPLTKKEQDWFLSFMDGEHIVRMSEGYI 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
G++V V+ GP F G ++ +D K R
Sbjct: 118 -TGDKVTVTRGPLMGFEGDIRKIDRHKRRA 146
>gi|220927662|ref|YP_002504571.1| NusG antitermination factor [Clostridium cellulolyticum H10]
gi|219997990|gb|ACL74591.1| NusG antitermination factor [Clostridium cellulolyticum H10]
Length = 188
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 8 VQVYSNCEKKAVESIGGR--LSRSGLDHLVTEIT------------IPSERVVSVRKGRK 53
++V S+C KKAV + +SG +H V + IP + G
Sbjct: 1 MKVTSDCVKKAVIGVHWYVLFVKSGREHRVEQYLKKIVGIDMINPFIPLHEFLFKISGTV 60
Query: 54 VNSERRFFPGYVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
+ FPGYV I++ M K+Y+ I ++ L + V DSE + +++
Sbjct: 61 KRELKPLFPGYVFIESDMAGQEFIRKLYNKIYLLSDIVRILKYSDTEIAVRDSEKQMLLD 120
Query: 109 QV--EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
E ++ SS G+R+ +++GP I+K V+ K + VE+ G V
Sbjct: 121 LCNNEHCIE---SSRGVIKGDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLV 177
Query: 167 ELAYNQVEKIV 177
+A VEK+V
Sbjct: 178 SVALEIVEKVV 188
>gi|213971370|ref|ZP_03399485.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1]
gi|301381257|ref|ZP_07229675.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
Max13]
gi|302059482|ref|ZP_07251023.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
K40]
gi|302129862|ref|ZP_07255852.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923908|gb|EEB57488.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1]
Length = 170
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R + R + + K E FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQDFE------CFRPLRAAAKKIAAKAQVEEALFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I+ ++ I+ T V + G +P PV D H++ Q+ + P ++ F
Sbjct: 59 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLCTPAPALRF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G++V ++ G + I D
Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTD 138
>gi|146298121|ref|YP_001192712.1| NusG antitermination factor [Flavobacterium johnsoniae UW101]
gi|146152539|gb|ABQ03393.1| transcription antitermination protein nusG [Flavobacterium
johnsoniae UW101]
Length = 154
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDH---LVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V EKK E +L++ G++ L+T++ S+R K E F
Sbjct: 3 WYVVYTKPKWEKKVAE----KLTQIGIECYCPLITQVKQWSDR--------KKKVEMPLF 50
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV I+ D+ +++ + ++ +L P+ V D EI I N ++A+ +S
Sbjct: 51 NSYVFIQIEDADR--NSVFEVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVS 108
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+VG+++ + G F++ N IV+ V S+ H +V+
Sbjct: 109 QIQVGDKIKLETGAFSNQNAIVQEV----SKTHYILVL 142
>gi|330967921|gb|EGH68181.1| transcriptional activator RfaH [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 170
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R + R + + K +E FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQNFE------CFRPLRAAAKKIAAKAQAEEALFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I+ ++ I+ T V + G +P PV D H++ Q+ + P + F
Sbjct: 59 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLSTPAPVLRF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G++V ++ G + I D
Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTD 138
>gi|149376808|ref|ZP_01894565.1| Transcriptional activator RfaH [Marinobacter algicola DG893]
gi|149358929|gb|EDM47396.1| Transcriptional activator RfaH [Marinobacter algicola DG893]
Length = 163
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 41 PSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD 100
P V ++ G++ FPGY+ + TD ++ ++ T ++ + P+ + D
Sbjct: 30 PKITVEKIKAGKRTKQLEPLFPGYLFVNLEQTDPMWAKLRSTRGILRIVSFANKPAAIPD 89
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
I+HI + + ++ + G+ V + +GPF I + D E+ +
Sbjct: 90 DVIQHIKDSLHTVAEQGG----IKPGQAVELDEGPFKGIEAIFQAYDGEERAI 138
>gi|11498148|ref|NP_069373.1| transcription antitermination protein NusG [Archaeoglobus fulgidus
DSM 4304]
gi|2650084|gb|AAB90698.1| LSU ribosomal protein L24A (rpl24A) [Archaeoglobus fulgidus DSM
4304]
Length = 150
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GY++++A D + I+ P V G + GE ++ SEIEH + +AA Q
Sbjct: 41 LKGYIIVEAETPDDLLKAIRGLPHVKGVV-KGE----ISFSEIEHFLTPKKAAEQ----- 90
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
G++V + GPF IVK VDE K+ + VE++
Sbjct: 91 --IREGDKVEIVSGPFKGEMAIVKRVDEAKNEITVELL 126
>gi|71734584|ref|YP_275310.1| transcriptional activator RfaH [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555137|gb|AAZ34348.1| transcriptional activator RfaH [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 170
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY++Q E +A E L R + P + V V+K +V ++ FP
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQHF-----QCYRPLQ--VDVKKTAARVQADEPLFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P PV D H++ Q+ + P
Sbjct: 58 GYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLSTPAPKAR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVD 147
F G+ V ++ G ++ I + D
Sbjct: 114 FIQGDPVMITTGSWSDVEAIFLSED 138
>gi|257484619|ref|ZP_05638660.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289628356|ref|ZP_06461310.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289650105|ref|ZP_06481448.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
str. 2250]
gi|320323819|gb|EFW79903.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327958|gb|EFW83963.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330869759|gb|EGH04468.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330882283|gb|EGH16432.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
str. race 4]
gi|331011293|gb|EGH91349.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 170
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY++Q E +A E L R + P + V V+K +V ++ FP
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQHF-----QCYRPLQ--VDVKKTAARVQADEPLFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P PV D H++ Q+ + P
Sbjct: 58 GYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLSTPAPKAR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVD 147
F G+ V ++ G ++ I + D
Sbjct: 114 FIQGDPVMITTGSWSDVEAIFLSED 138
>gi|330953998|gb|EGH54258.1| transcriptional activator RfaH [Pseudomonas syringae Cit 7]
Length = 170
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + V + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQQF-----ECYRPLQ-VDAKKPGTRVQAGEALFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 TQGDAVLITHASWGEVEAIFLSED 138
>gi|167769207|ref|ZP_02441260.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM
17241]
gi|167668847|gb|EDS12977.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM
17241]
Length = 169
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++QV + E R L + +P E + + G + FPG
Sbjct: 3 KWYVLQVLAGQETAV---------RDALHIMGIRAAVPQEERLLRKNGGWTSRIYTLFPG 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHI 106
YV + + + Y+ +K P V+ FLG +G +PS +T E E +
Sbjct: 54 YVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWL 97
>gi|156935836|ref|YP_001439752.1| transcriptional activator RfaH [Cronobacter sakazakii ATCC BAA-894]
gi|156534090|gb|ABU78916.1| hypothetical protein ESA_03719 [Cronobacter sakazakii ATCC BAA-894]
Length = 184
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ ++ L R ++ L IT+ E++V +GR+ + FP Y
Sbjct: 26 WYLLY----CKRGQLQRAKEHLERQSVNCLTPMITL--EKMV---RGRRTSVSEPLFPNY 76
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ D TI T V F+ G +P+ V + IE +++ V P +
Sbjct: 77 LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDTP---H 133
Query: 125 VGERVCVSDGPFASFNGIVKNVDEE 149
G+ V +++G F I D E
Sbjct: 134 TGDMVVITEGAFEGLQAIFTEPDGE 158
>gi|223985913|ref|ZP_03635949.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM
12042]
gi|223962100|gb|EEF66576.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM
12042]
Length = 171
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V E+K I GL+ IP +VV ++G E+ FPGY
Sbjct: 3 WYVLFVRGGMEEK----IRDFFLSQGLNAF-----IPKMKVVFRKQGISELVEKIMFPGY 53
Query: 65 VLI-----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ I +A M +++ ++ L + +P SE + + ++ +
Sbjct: 54 LFIESELEQAAMDEQIKELRMQKTGIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVLEH 113
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S G +V +++GP F + +D K R +E+ + G+ V ++ V+KI
Sbjct: 114 STGLIQGNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQKI 170
>gi|298487576|ref|ZP_07005617.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157668|gb|EFH98747.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 170
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY++Q E +A E L R + P + V V+K +V ++ FP
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQHF-----QCYRPLQ--VDVKKTAARVQADEPLFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P PV D H++ Q+ + P
Sbjct: 58 GYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLSTPAPKAR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVD 147
F G+ V ++ G ++ I + D
Sbjct: 114 FIQGDPVMITTGSWSDVEAIFLSGD 138
>gi|28870605|ref|NP_793224.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28853853|gb|AAO56919.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331019789|gb|EGH99845.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 170
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R + R + + K E FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQDFE------CFRPLRAAAKKIAAKAQVEEALFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P ++ F
Sbjct: 59 YLFIHMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLCTPAPALRF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G++V ++ G + I D
Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTD 138
>gi|70728935|ref|YP_262171.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5]
gi|68343234|gb|AAY90840.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5]
Length = 239
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + +A E+ L R G + ERVV +GR+ + FPGY
Sbjct: 84 WYLVQCKPRQDLRAEEN----LRRQGFHCYRPQRGC--ERVV---QGRRQSGTESLFPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I A+ D + ++ T V + P V S IE + +V + +
Sbjct: 135 LFI-ALEHDASWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLRQRVTD-----MDTSLPY 188
Query: 125 VGERVCVSDGPFASFNGIVK-NVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G RVC+++G FA I + ++ +E RV + + + + +EL + + KI
Sbjct: 189 KGTRVCITEGCFADLEAIFESSIGDE--RVVLLLTLLNQQRRIELPLSSIRKI 239
>gi|260596064|ref|YP_003208635.1| transcriptional activator RfaH [Cronobacter turicensis z3032]
gi|260215241|emb|CBA27127.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
Length = 179
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ ++ L R ++ L IT+ E++V +GR+ + FP Y
Sbjct: 21 WYLLY----CKRGQLQRAKEHLERQSVNCLTPMITL--EKMV---RGRRTSVSEPLFPNY 71
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ D TI T V F+ G +P+ V + IE +++ V P +
Sbjct: 72 LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDTP---H 128
Query: 125 VGERVCVSDGPFASFNGIVKNVDEE 149
G+ V +++G F I D E
Sbjct: 129 TGDMVVITEGAFEGLQAIFTEPDGE 153
>gi|167623413|ref|YP_001673707.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4]
gi|167353435|gb|ABZ76048.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4]
Length = 178
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI-TIPSERVVSVRKGRKVNSERRFFPG 63
WY++ S E +A +++ L + T + T P E++V KG+ FP
Sbjct: 4 WYLIYCKSRGEARAQQNLA-------LQQIDTYLPTYPEEKLV---KGQVSVRRVSLFPS 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI------EH-IMNQVEAAVQR 116
Y+ I I +T VI +G E + + DS I EH +++++ +
Sbjct: 54 YLFINFDPEVTSVSKIHNTRGVIRIVGCKELMTSIDDSVIHAIKMREHKLLSEISSQSAE 113
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
P + E G++VC + GPF GI + EK R V + G+
Sbjct: 114 PAPKM--EQGDKVCFTKGPFVELEGIFDEANGEK-RCFVLFELMGK 156
>gi|330974585|gb|EGH74651.1| transcriptional activator RfaH [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 170
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQQF-----ECYRPLQ-ADAKKTGTRVQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 AQGDTVLITHASWGDIEAIFLSKD 138
>gi|319427039|gb|ADV55113.1| transcriptional acivator RfaH [Shewanella putrefaciens 200]
Length = 168
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ IK + + T V + E +P+ D I I M + ++
Sbjct: 55 LFIKFDPSQTSVRQVHSTRGVNRIINCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GE++ DGPF G+ + K R HV + G+V + + +E++
Sbjct: 115 KMGEKIRFKDGPFVDLEGVFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERVC 167
>gi|226497218|ref|NP_001151355.1| transcription termination factor nusG family protein [Zea mays]
gi|195646054|gb|ACG42495.1| transcription termination factor nusG family protein [Zea mays]
Length = 336
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
PV +SE+ +MN+++ ++ S F G V V GPFA F G + V+ +
Sbjct: 244 PVEESEL-MLMNKIKKQFKKSSSQGGTRHSAFSPGATVHVLSGPFADFTGSILEVNRKNK 302
Query: 152 RVHVEVVIFGRVTPVELAYNQVE 174
+ V++ +FG+ + V+L ++Q+E
Sbjct: 303 KATVQLSLFGKESFVDLDFDQIE 325
>gi|308048785|ref|YP_003912351.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799]
gi|307630975|gb|ADN75277.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799]
Length = 163
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y +K+A +R+ L+ +P V +++G++ FP Y
Sbjct: 4 WYLL--YCKGKKEAT-------ARAYLEQRNLSCFLPEAEVECIKRGKRTLVTAPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ T+ P V + T +P+ + + I +++ A + +
Sbjct: 55 LFVRFDPFQTPITTVMSAPGVASVVRTDGKIAPIETAIVVAIRERLKRAAVSLMDAP--T 112
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
G+ V + DGPFA+ GI + D +K R + + I G+ P+ +
Sbjct: 113 AGDTVEILDGPFANLQGIFREPDGDK-RSLLLLEILGQQKPISM 155
>gi|240140460|ref|YP_002964939.1| hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens
AM1]
gi|240010436|gb|ACS41662.1| Hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens
AM1]
Length = 187
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 104 EHIMNQVEAA--VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+HI +A VQ V ++F VG+ V +S+G FA+F ++ VD ++ R V V +FG
Sbjct: 114 DHITGHKKAGKGVQDFVETLF-SVGDEVRISNGAFATFMAKIEGVDVKRGRYTVAVDVFG 172
Query: 162 RVTPVELAYNQVE 174
R P E+A +E
Sbjct: 173 RPVPFEIAEESLE 185
>gi|66046455|ref|YP_236296.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
B728a]
gi|63257162|gb|AAY38258.1| Transcriptional activator RfaH [Pseudomonas syringae pv. syringae
B728a]
Length = 170
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQQF-----ECYRPLQ-ADAKKTGTRVQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 AQGDAVLITHASWGDVEAIFLSKD 138
>gi|21673456|ref|NP_661521.1| NusG/RfaH family transcriptional regulator [Chlorobium tepidum TLS]
gi|21646560|gb|AAM71863.1| transcriptional regulator, NusG/RfaH family [Chlorobium tepidum
TLS]
Length = 200
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + L GL + I + R S RK R E GY
Sbjct: 11 WYAVYVRSRYEKKVHQY----LLEKGLSSFLP--LIETLRQWSDRKKR---VEEPLIRGY 61
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + + H + +T V+ F+G G+ PS +++ +I+ + + +
Sbjct: 62 VFVNINYHKEHVHVL-ETDGVVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIP 120
Query: 125 VGERVCVSDGPFASFNGIVKNVD-EEKSRVHVEVVIFG 161
VG++V V GPF G+VK EE+ V+ + ++ G
Sbjct: 121 VGKKVRVLAGPFKDMEGVVKKEGREERLLVYFDSIMQG 158
>gi|218512771|ref|ZP_03509611.1| transcription antitermination protein NusG [Rhizobium etli 8C-3]
Length = 40
Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI 40
M RWYIV YSN EKK E I + + GL+HL +I +
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILV 40
>gi|313676303|ref|YP_004054299.1| nusg antitermination factor [Marivirga tractuosa DSM 4126]
gi|312943001|gb|ADR22191.1| NusG antitermination factor [Marivirga tractuosa DSM 4126]
Length = 174
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + S EKK + + + H+ E+ P++ V+ RK + FP Y
Sbjct: 4 WFAIYTKSRTEKKVADRLADQ-------HI--EVYCPTQTVMRQWSDRKKKVKVAVFPSY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
V +K D I TP V+ F LG P I++++ + E P
Sbjct: 55 VFVK-FQDDNERLRILQTPGVVNFVRHLGADAKIRPKEIEAIQNLLGEYEEVSVEP---- 109
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VG++V + G G V + E+K RV V + G E++ +V+K+
Sbjct: 110 -FQVGDKVQIQHGGMKGQEGKV--ILEQKDRVIVYIESLGLSLKAEVSKAKVKKV 161
>gi|84516255|ref|ZP_01003615.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53]
gi|84509951|gb|EAQ06408.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53]
Length = 171
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T W+I Q+ N A+ + L R + H P+E R + V + F
Sbjct: 7 TAAWHIAQLRPNGLLMALRN----LERQSVAHFA-----PTELRTERRGAKFVTRDVPAF 57
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++ + T + + G+ P+ V I + + P
Sbjct: 58 PGYVFVQPSAASGGVRAVNSTRGITKLVTLGQGPAIVPAGLIAALRIRFAPPDITPAPQ- 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V + DGPFA F V+ + RV++ + + GR T V + +++
Sbjct: 117 -FDQGDWVRILDGPFAEFVAQVEATPAAE-RVYLLIDLMGRATRVAVDARSLKR 168
>gi|30248484|ref|NP_840554.1| putative transcriptional activator [Nitrosomonas europaea ATCC
19718]
gi|30138370|emb|CAD84379.1| putative transcriptional activator [Nitrosomonas europaea ATCC
19718]
Length = 165
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V EK A +++ + R L L E + G + FP Y
Sbjct: 3 WYLVHTKPKQEKCAFQNLQQQGYRCYLPMLPVE---------KLHLGNLTVVDEPLFPRY 53
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ D K + I+ T V + G P+ + D I+ + Q + +P
Sbjct: 54 LFIQLEQGDSAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQEASFQHKP--ERL 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG-----RVTPVEL 168
F+ GERV +++G FA GI + + E+ RV V + + RV+P L
Sbjct: 112 FKPGERVRLTEGAFAGIEGIYQMAEGER-RVMVLIELLSKPVAMRVSPTSL 161
>gi|220926439|ref|YP_002501741.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060]
gi|219951046|gb|ACL61438.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060]
Length = 171
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+RV V GPFASF +V+ V R+ V V IFGR TP E + V I
Sbjct: 120 AGDRVVVQAGPFASFPAMVEEV-LPNERLKVAVQIFGRATPFECGHADVRPI 170
>gi|330943991|gb|EGH46181.1| transcriptional activator RfaH [Pseudomonas syringae pv. pisi str.
1704B]
Length = 170
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQQF-----ECYRPLQ-ADAKKTGTRVQTGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKAQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSED 138
>gi|330898232|gb|EGH29651.1| transcriptional activator RfaH [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 170
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G K + FPG
Sbjct: 9 RWYLIQTKPRQEARAEE----HLRRQQF-----ECYRPLQ-ADAKKTGAKAQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKAQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSED 138
>gi|330976250|gb|EGH76312.1| transcriptional activator RfaH [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 170
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G K + FPG
Sbjct: 9 RWYLIQTKPRQEARAEE----HLRRQQF-----ECYRPLQ-ADAKKTGAKAQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKAQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSED 138
>gi|119469076|ref|ZP_01612060.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7]
gi|119447328|gb|EAW28596.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7]
Length = 161
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V C+ + E L+ G++ +T +E++V K R+ + FP Y
Sbjct: 4 WYLVI----CKPRQEERAKANLNNQGIEAFYPILT--TEKLV---KSRRTVKQVALFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + + +K+T + GF+ G N V + IEH+ N V+ S +
Sbjct: 55 LFVCLDSKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNHTSNTVE----SQLPK 110
Query: 125 VGERVCVSDGPFASFNGIVKNVD 147
G+ V VS+ F + + I K D
Sbjct: 111 QGDAVSVSNHSFKNIDAIYKEPD 133
>gi|222149506|ref|YP_002550463.1| transcription antitermination protein [Agrobacterium vitis S4]
gi|221736488|gb|ACM37451.1| transcription antitermination protein [Agrobacterium vitis S4]
Length = 220
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
ER F GY+ ++ + ++ Y + ++ +G P + ++ + + + A ++
Sbjct: 97 ERALFRGYLFVRMIPDNEAYAGLLLASRLQSLMGRDGKPYLMPETLMRQLQLSAKTAERQ 156
Query: 117 PVSSVFFE-----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + +G++V + GPFA F V+ V ++ +V V+V +FG ++ V + +
Sbjct: 157 HMDACGVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTMGVD 216
Query: 172 QVE 174
+E
Sbjct: 217 AIE 219
>gi|149925742|ref|ZP_01914006.1| NusG antitermination factor [Limnobacter sp. MED105]
gi|149825859|gb|EDM85067.1| NusG antitermination factor [Limnobacter sp. MED105]
Length = 179
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR-KVNSERRFFP 62
+WY++ E A+E+ L R + + P RV + G+ V FP
Sbjct: 15 QWYVMYTKPRQETVALEN----LQRQNYN-----VFFPQARVQKRKTGQGTVQVVEPLFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121
Y+ I+ + + ++ T + + G PS V IE I +Q+++ +V +
Sbjct: 66 RYMFIQLEVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLLKLN 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVG V V++GPF G + + RV V + + G VELA +Q++K
Sbjct: 126 ELEVGGEVRVAEGPFEGMMGKIA-ARKSDQRVIVLLNVLGAERSVELAQSQLDK 178
>gi|289678572|ref|ZP_06499462.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
FF5]
Length = 170
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G K + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQQF-----ECYRPLQ-ADAKKTGAKAQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSED 138
>gi|145300265|ref|YP_001143106.1| transcriptional activator RfaH [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853037|gb|ABO91358.1| transcriptional activator RfaH [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 165
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+ E +A R+ L+ E P + +R+G++V FP
Sbjct: 3 KWYLAYCKPKEEARA---------RAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFPN 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I + + T+K T + + G+ + ++ + +M++ ++ R +
Sbjct: 54 YLFIYVDLEEVTPVTLKSTRGISRIIHFGKEWTAISSQLVYQLMSRDDSDEARASYANLP 113
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEK 150
G++V + GP A F I D EK
Sbjct: 114 TQGDKVLIESGPLAGFEAIYLEPDGEK 140
>gi|6478916|gb|AAF14021.1|AC011436_5 unknown protein [Arabidopsis thaliana]
Length = 332
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEA 112
FPG + I+ ++ +++ +I+D V GF+G+ P PV DS++E I Q +
Sbjct: 153 FPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAKE 212
Query: 113 AVQRPVS 119
A ++ S
Sbjct: 213 AQEKADS 219
>gi|91794023|ref|YP_563674.1| transcriptional activator RfaH [Shewanella denitrificans OS217]
gi|91716025|gb|ABE55951.1| transcription antitermination protein nusG [Shewanella
denitrificans OS217]
Length = 166
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 18/172 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ + S L P + +G+ E FP Y
Sbjct: 4 WYLLYCKPKSELRAQQNLALQQVESYL---------PVIKEQKTARGKTKVVEVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQRPVSSV 121
+ I T+ +TI T +G E +P+ D +EI+H + + +Q +
Sbjct: 55 LFIHFDPTEFSVNTIHSTRGASRIIGCKELMTPINDAIIAEIKHRVGNHQVELQPELVK- 113
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV GPFA + I + + +K R HV I G+ +++ +Q+
Sbjct: 114 ----GDRVRFIQGPFADLDAIFEEHNGDK-RCHVLFTIMGQQKSLQVNLDQI 160
>gi|28897599|ref|NP_797204.1| transcriptional activator RfaH [Vibrio parahaemolyticus RIMD
2210633]
gi|153838389|ref|ZP_01991056.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810]
gi|260363316|ref|ZP_05776183.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030]
gi|260878245|ref|ZP_05890600.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034]
gi|260895439|ref|ZP_05903935.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466]
gi|260903333|ref|ZP_05911728.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037]
gi|28805811|dbj|BAC59088.1| putative transcriptional activator RfaH [Vibrio parahaemolyticus
RIMD 2210633]
gi|149748248|gb|EDM59107.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810]
gi|308088632|gb|EFO38327.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466]
gi|308090167|gb|EFO39862.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034]
gi|308107999|gb|EFO45539.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037]
gi|308113596|gb|EFO51136.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030]
gi|328473416|gb|EGF44264.1| transcriptional activator RfaH [Vibrio parahaemolyticus 10329]
Length = 166
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ K E I ++ L++ E P+ V + +G++ E FP
Sbjct: 3 RWYLLYC------KRGEQI---RAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFPC 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + + +++ T V+ F+ G P V + + + ++ +S
Sbjct: 54 YVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELKQLEKCCTEKNISECM 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V V G FA + I + D EK + + +I RV
Sbjct: 114 PKPGDQVRVKSGQFAGIDAIFQEQDGEKRSIMLVQMISKRV 154
>gi|18398425|ref|NP_566346.1| PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription
elongation regulator [Arabidopsis thaliana]
gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]
gi|22136582|gb|AAM91077.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]
Length = 333
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEA 112
FPG + I+ ++ +++ +I+D V GF+G+ P PV DS++E I Q +
Sbjct: 154 FPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAKE 213
Query: 113 AVQRPVS 119
A ++ S
Sbjct: 214 AQEKADS 220
>gi|189499920|ref|YP_001959390.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
gi|189495361|gb|ACE03909.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
Length = 169
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + R S L + + R S RK +KV+ F GY
Sbjct: 9 WYAVYVRSRFEKKIHQLFEDRGITSFLP------LVDTWRQWSDRK-KKVSMP--LFKGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ + K ++TI +T V+ F+G PS + D +IE I ++ + +V E
Sbjct: 60 VFVR-INFRKDHYTILETDGVVKFIGIRNVPSVIRDRDIEWI--KILVGEPDSLRNVLPE 116
Query: 125 V--GERVCVSDGPFASFNGIVKN 145
+ G+RV V GPF G+++
Sbjct: 117 MPAGQRVKVIAGPFVGLEGVIRK 139
>gi|46204856|ref|ZP_00209587.1| COG0250: Transcription antiterminator [Magnetospirillum
magnetotacticum MS-1]
Length = 63
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F +G+ V ++DG FA+F V+ VD ++ R V V +FGR P E+A +E
Sbjct: 9 LFAIGDEVRITDGGFATFMAKVEKVDVKRGRYTVAVDVFGRPVPFEIAEESLE 61
>gi|330986281|gb|EGH84384.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 170
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY++Q E +A E L R + P + V V+K +V ++ FP
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQHF-----QCYRPLQ--VDVKKTAARVQADEPLFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P PV D H++ Q+ + P
Sbjct: 58 GYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLSTPAPKAR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVD 147
F G+ V ++ ++ I + D
Sbjct: 114 FIQGDPVMITTSSWSDVEAIFLSED 138
>gi|308805116|ref|XP_003079870.1| unnamed protein product [Ostreococcus tauri]
gi|116058327|emb|CAL53516.1| unnamed protein product [Ostreococcus tauri]
Length = 417
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 91/238 (38%), Gaps = 69/238 (28%)
Query: 5 WYIVQVYSNCEKKAVESI----GGRLSRSGLDHLVTEI-TIPSERVVSVRKGRKVNSERR 59
W++++ N E++A E I G +L+R + LV + +P + + + SE
Sbjct: 183 WFMLETAENREERAREMILALNGTKLTREQREPLVAWVPRVPRDNFYLTEEDAEGKSELE 242
Query: 60 FF-------------PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------------ 94
PGYVL++ +T + D V GF G +
Sbjct: 243 LCQMVGEEDMAEMIQPGYVLVRCTLTQTLTDAFNDLWSVRGFATGGSSRFGKKSYEKLNQ 302
Query: 95 ----------------PSPVTDSEIEHIMNQVE------AAVQ----------RPVSSVF 122
P TD +++ +VE A Q RP SS
Sbjct: 303 PLSMDDQIPRMIRKCVPVVKTDEQVKADEARVEVQEVARAGRQERDENDGDDLRPTSSS- 361
Query: 123 FEVG----ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG +R+ V DGPF F G + + +++ S V + IFGR T V L ++ + I
Sbjct: 362 -EVGAATYDRIEVHDGPFKGFKGFIVSENDDGS-VEATLAIFGRDTNVTLTSDEYKCI 417
>gi|291544741|emb|CBL17850.1| Transcription antiterminator [Ruminococcus sp. 18P13]
Length = 186
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y++Q + AV L+ L P + R G +E FPGYV
Sbjct: 3 YVLQTKPGQDDNAVRD---------LERLGYRSYAPRRIALHRRGGTWWEAEYPVFPGYV 53
Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + +TD YH I VI FLG G P P+ + E E+I S V
Sbjct: 54 FLDDLELTDVDYHRIMPCVGVIRFLGHGA-PEPLPEHEAEYIRWLHNGGKPIAPSEVRIR 112
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G +S+ G V++ + + R + + I G++ + LA V++
Sbjct: 113 PDGSMQYVSGLISSYAGRVEH-NSRQRRATIRISIAGKLHRITLAVRYVQQ 162
>gi|189218043|ref|YP_001938685.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum
infernorum V4]
gi|189184901|gb|ACD82086.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum
infernorum V4]
Length = 185
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 17/172 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + + EK AVE+ L E+ P + +R + FPGY
Sbjct: 11 WYCLSIQPKKEKLAVEN---------LKKENIEVFFPQFQYQKIRSRKTSLVLEPLFPGY 61
Query: 65 VLIKAVMTDKV--YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
+ K + K+ + K KV+ F G + + DS IE + Q E ++ +
Sbjct: 62 LFAKFNLYSKLTFVRSTKGVRKVVHF---GSSYPVIPDSFIEELRIQFGEEGIKTIRERI 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+VG + +++GPF ++ IV K RV V + GR +E+ ++
Sbjct: 119 --DVGSTINIAEGPFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168
>gi|94970525|ref|YP_592573.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
gi|94552575|gb|ABF42499.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
Length = 194
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + Y EKK E + R S L + T + + V++ FPGY
Sbjct: 27 WSALFTYPRHEKKVAEQLLCRGVESFLPLYAEKRTWKNRQTVTLTLP--------LFPGY 78
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + D+V + P V+ + S ++D IE + + RP
Sbjct: 79 VFARFARRDRV--RVMSLPGVVSIVERAGAVSSISDHYIEKLRAGIRLGRVRPFREAI-- 134
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+G+RV ++ GP + G++ + E RV V + + G+ +E+ +++
Sbjct: 135 LGDRVQITSGPLSGLEGVLMHFRSE-FRVVVSIGMIGQSVSIEVLRDEI 182
>gi|222149046|ref|YP_002550003.1| transcription antitermination protein [Agrobacterium vitis S4]
gi|221736031|gb|ACM36994.1| transcription antitermination protein [Agrobacterium vitis S4]
Length = 220
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
ER F GY+ ++ + ++ Y + ++ +G P + ++ + + +AA +R
Sbjct: 97 ERPLFRGYLFVRVIPDNEAYAGLLLASRLQSLMGQDGKPYLMPETLMRQLQLSAKAAERR 156
Query: 117 PVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ + + +G++V + GPFA F V+ V ++ +V V+V +FG ++ V
Sbjct: 157 HMDAGDVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEV 211
>gi|331660394|ref|ZP_08361329.1| putative transcription termination factor NusG [Escherichia coli
TA206]
gi|331052661|gb|EGI24697.1| putative transcription termination factor NusG [Escherichia coli
TA206]
Length = 178
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR---- 59
+WY+ + N K E + G LS D +T T R+ +R+ K+ + R
Sbjct: 12 QWYLARY--NTTGKNREVLFGWLS----DQFMTPWT--PLRLCRIRRTDKIRAYRTRVQA 63
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMN 108
FPGY +K + ++ I+ I F GTG P PV+D + +MN
Sbjct: 64 VFPGYFFLKVNLAEQSAAGIRRHSGFIDFVTFGTGSEPVPVSDCLVRSLMN 114
>gi|83309147|ref|YP_419411.1| transcription antitermination protein nusG [Magnetospirillum
magneticum AMB-1]
gi|82943988|dbj|BAE48852.1| Transcription antitermination protein nusG [Magnetospirillum
magneticum AMB-1]
Length = 167
Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V ++N EK A G L R D + + S+R RK V + FP Y
Sbjct: 4 WFVVHTHANAEKIA----AGHLQRQHFDVYLPQY---SKRRSHARKVEWVKAP--LFPRY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSSVFF 123
+ ++ + +I+ T V + G P P+ I+ I + ++ + ++ F
Sbjct: 55 LFLRMDPDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGEAMPF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
G+R+ + +GP A G+ + +D + +RV + + + GR
Sbjct: 115 ASGQRLEIVEGPLAEQLGLFQGLD-DMNRVVLLLDLLGR 152
>gi|149189138|ref|ZP_01867426.1| transcriptional activator RfaH [Vibrio shilonii AK1]
gi|148837101|gb|EDL54050.1| transcriptional activator RfaH [Vibrio shilonii AK1]
Length = 163
Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ C++ L GL+ EI++ E+++ +G++ N + FP
Sbjct: 3 RWYLLY----CKRGEQARAKMHLENQGLECYYPEISV--EKIL---RGKRQNVKEPLFPS 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV +K + T++ T V+ F+ G P + I + + V P +
Sbjct: 54 YVFVKFDYEVGPSFTTVRSTRGVVDFIRFGAQPKEINGDLIFELRSMVHC--DEPDCADL 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ GE V V G FA I + D E + + V + + PV +
Sbjct: 112 PDKGECVRVIGGQFAGIEAIFQEADGEARSIML-VNLINKQVPVSI 156
>gi|24374707|ref|NP_718750.1| transcriptional activator rfaH, putative [Shewanella oneidensis
MR-1]
gi|24349362|gb|AAN56194.1|AE015757_4 transcriptional activator rfaH, putative [Shewanella oneidensis
MR-1]
Length = 166
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 13/174 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEVRAQQNLA-------LQNLETYLPMVSEE--KSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + T V + E +P+ D I H + E + V E
Sbjct: 55 LFINFDPSQTSVKQVHSTRGVSRIVNCQEKMTPI-DDRIIHAIRMKELTPSQSVLDTPLE 113
Query: 125 V--GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE++ DGPFA I + K R HV I G++ + + VE++
Sbjct: 114 LKTGEKIRFKDGPFADLEAIFQEKCPNK-RCHVLFNIMGQINILTVPEQSVERV 166
>gi|323138187|ref|ZP_08073260.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
gi|322396649|gb|EFX99177.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
Length = 186
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 13/166 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62
RWY+ Q + E A G +L G ++ + +VR RK+ + R FP
Sbjct: 25 RWYVAQTLARREAGA----GAQLVAQGFAVFTPQV------IKTVRHARKLRTVRAPAFP 74
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ + + + ++ T V + + P PV +E ++ V+ A
Sbjct: 75 GYLFVILDLNRDRWRSVNGTFGVARMIMGEDVPMPVPAGVVETLLGYVDEAGVCRFDRDL 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E G+ V V+ GPFA G + +D RV V + I G P L
Sbjct: 135 VE-GQAVRVTVGPFAQAIGELVRLD-ANGRVRVLLEIMGGKIPATL 178
>gi|224087633|ref|XP_002308199.1| predicted protein [Populus trichocarpa]
gi|222854175|gb|EEE91722.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 70/237 (29%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS---- 56
+ P+W+IV+V S + RL + ++ PS V++ RK+ +
Sbjct: 107 LGPQWWIVRV-SRIRGDETSDVLARLLARNFPQMDFKVYAPS-----VKERRKLKNGTYS 160
Query: 57 --ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHI 106
+ FPG V + V+ +++ +++ V GF+G P PV+D ++E +
Sbjct: 161 VKPKPIFPGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAV 220
Query: 107 MNQV-------------EAAVQRPVSSVFF------------------------------ 123
Q E Q ++SV
Sbjct: 221 FQQAKEEQEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSS 280
Query: 124 -------EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ G V V G FA F G +K ++ + + V V +FG+ + VEL +++
Sbjct: 281 RKKGDLPKTGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337
>gi|297833678|ref|XP_002884721.1| PTAC13 [Arabidopsis lyrata subsp. lyrata]
gi|297330561|gb|EFH60980.1| PTAC13 [Arabidopsis lyrata subsp. lyrata]
Length = 337
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FF 61
P+W++V+V + + + L+R + T + PS +V K ++ + + F
Sbjct: 96 PQWWVVRVSRLRGHETAQILARALARQFPEMEFT-VYAPSVQVKRKLKNGSISVKPKPVF 154
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEAA 113
PG + I+ ++ +++ +I++ V GF+G+ P PV DS++E I Q + A
Sbjct: 155 PGCIFIRCILNKEIHDSIREVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAKEA 214
Query: 114 VQRPVS 119
++ S
Sbjct: 215 QEKADS 220
>gi|313900768|ref|ZP_07834260.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
gi|312954438|gb|EFR36114.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
Length = 170
Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+ QV S E+K VE +S+ L I ++ + G + + F G
Sbjct: 2 KWYVGQVRSGHERKIVEKCRTMISKDVLQDCFIPEYIRKKKYM----GNWHDVKDILFKG 57
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + D++ +K P + +G + + P+ + E+ + + + +S+ F
Sbjct: 58 YIFMITDQIDQLNIELKKIPDFVKVIGKKKADIFPLNEEEVAFMKSFGKENHVVEMSTGF 117
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE++ +++GP G + +D K ++++ +F + T ++ + K
Sbjct: 118 IQ-GEQIFITEGPLQGKEGQIIRIDRHKRVAYLQLSMFNKETTTKVGLEIISK 169
>gi|119358362|ref|YP_913006.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
gi|119355711|gb|ABL66582.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
Length = 180
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT--IPSERVVSVRKGRKVNSERRFFP 62
WY V V S EKK + L E+T +P + RK F
Sbjct: 9 WYAVYVRSRHEKKVHQLF-----------LEKELTSFLPLLETMRQWSDRKKKVYEPLFR 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSS 120
GYV + M + + + DT VI F+G G+ PS + +IE + V ++ + V +
Sbjct: 58 GYVFVNIAMR-RDHIRVLDTDGVIKFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDA 116
Query: 121 VFFEVGERVCVSDGPFASFNGIV 143
+ G+ V V GPF F G+V
Sbjct: 117 L--PPGQLVRVLAGPFKDFEGVV 137
>gi|29654154|ref|NP_819846.1| transcriptional activator RfaH [Coxiella burnetii RSA 493]
gi|29541420|gb|AAO90360.1| transcriptional activator [Coxiella burnetii RSA 493]
Length = 167
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E+ A E+ L R G I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQERIAEEN----LERQGY-----RIYLPFIQVNRRRSGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N E + P F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNN-ETSASVPPKVSLFQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + + RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFE-MHSGAKRVTLLLDMVGKVTRVEVPLDSV 164
>gi|117621236|ref|YP_855455.1| transcriptional activator RfaH [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562643|gb|ABK39591.1| transcriptional activator RfaH [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 183
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 9/147 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+ E +A R+ L+ E P + +R+G++V FP
Sbjct: 20 KWYLAYCKPKEEARA---------RAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFPN 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I + + T+K T + + G + ++ + +M++ ++ R +
Sbjct: 71 YLFIYVDLEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQLMSRDDSDEARASYASLP 130
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEK 150
G++V + GP A F I D +K
Sbjct: 131 TQGDKVLIESGPLAGFEAIYLEPDGDK 157
>gi|169839653|ref|ZP_02872841.1| Transcription antitermination protein nusG [candidate division TM7
single-cell isolate TM7a]
Length = 104
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 49 RKGRKVNSERRFFPGYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENP 95
++G+ V R+ FP YV+I+ + + ++ I++T V GF+G G +P
Sbjct: 32 KRGKMVKVPRKLFPSYVMIEMLSVREENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDP 91
Query: 96 SPVTDSEIEHIMN 108
P++D E +++
Sbjct: 92 IPLSDEEATDLLS 104
>gi|302188213|ref|ZP_07264886.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
642]
Length = 170
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E L R E P + + + G + ++ FPG
Sbjct: 9 RWYLIQTKPRQEARAEEH----LRRQQF-----ECYRPLQ-ADAKKTGIRGQADEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D H++ Q+ + P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRD----HLIEQIRQRLATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVD 147
G+ V ++ + I + D
Sbjct: 115 ARGDAVLITHASWGDVEAIFLSED 138
>gi|206890959|ref|YP_002248310.1| transcription termination factor NusG domain protein
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742897|gb|ACI21954.1| transcription termination factor NusG domain protein
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 169
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V S E K + RL+++G+ E +P+ + K RK + FPGY
Sbjct: 8 WYCIYVKSRHEFKVFD----RLTKAGI-----EAFLPAVERLRRWKDRKKLIKFPLFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSV- 121
+ + + ++ + TP V+ F+ T PS + E + + A++ R +
Sbjct: 59 LFVCIEKSYELMLKVLKTPGVVTFIKT---PSGEPEPIPEEEIVPLRKAIENGREIDPYP 115
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + G+RV + GP A GI+K E++ + + I R V++ ++VE
Sbjct: 116 YLKEGQRVKIKSGPLAGATGILKK-KEKQHFFIISIHILQRAVSVKIDASEVE 167
>gi|295106883|emb|CBL04426.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
Length = 172
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 5/156 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++QV E+ E + S +G D L+ E S +++ +KG FPGY
Sbjct: 7 WHVLQVAPGQERSMAERVS---SLAGPD-LLRECFPLSYQLLKKQKGTWRLVTEVMFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + D V +K + LG G+ +T E + A +S E
Sbjct: 63 VFLSTGDIDAVRERLKLSTSFARLLGAGDAIFSLTSEEAAFVSEFGGADHVVGMSQGVIE 122
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
G R V GP G+V+ +D K +++V +
Sbjct: 123 DG-RTVVRSGPLRGREGLVRKIDRHKRVAYLDVGLL 157
>gi|91225922|ref|ZP_01260891.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01]
gi|269966032|ref|ZP_06180123.1| transcriptional activator RfaH [Vibrio alginolyticus 40B]
gi|91189572|gb|EAS75848.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01]
gi|269829339|gb|EEZ83582.1| transcriptional activator RfaH [Vibrio alginolyticus 40B]
Length = 166
Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + +A + L++ E P+ V + +G++ E FP
Sbjct: 3 RWYLLYCKRGEQVRA---------KQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFPC 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + +++ T V+ F+ G P V + +M + VS
Sbjct: 54 YVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNDNTVSECM 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G+++ V G FA + I + D EK + + +I RV
Sbjct: 114 PKPGDQIRVKSGQFAGIDAIFQEQDGEKRSIMLVQMITKRV 154
>gi|146280091|ref|YP_001170248.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC
17025]
gi|145558332|gb|ABP72943.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC
17025]
Length = 174
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 15/176 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY+VQ N R++ L + P++ R ++ ++ F
Sbjct: 10 TAPWYLVQTKPN---------AFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLF 60
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPVS 119
PGY+ ++ + I T V + G PSPV + I + + + + P
Sbjct: 61 PGYLFVRFNPEFPQWRAINATYGVSRLVTFGNIPSPVPHALIAGLRQRCANDGTLLPPEQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+G+RV + GPFA + V+ ++ +K RV + + I G T ++ ++K
Sbjct: 121 ---LSLGDRVRIISGPFADYVATVEQIEPDK-RVWILLDILGGQTKTQIQIAALQK 172
>gi|288931718|ref|YP_003435778.1| NusG antitermination factor [Ferroglobus placidus DSM 10642]
gi|288893966|gb|ADC65503.1| NusG antitermination factor [Ferroglobus placidus DSM 10642]
Length = 151
Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 34 LVTEITIPSERVVS-----VRKGRKVNSERRFFP----GYVLIKAVMTDKVYHTIKDTPK 84
V + T ER+V+ V K K N P GYV+++A T+ + +I+ P
Sbjct: 5 FVVKTTANQERLVANMMSMVAKKNKANVYSILAPKELKGYVIVEAESTEDLVKSIRGVPH 64
Query: 85 VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVK 144
V G + GE V+ +EIEH + +AA Q + G V + GPF +VK
Sbjct: 65 VKGLV-RGE----VSFNEIEHFLTPRKAAEQ-------IKEGYTVEIISGPFKGELAVVK 112
Query: 145 NVDEEKSRVHVEVV 158
VDE ++ + VE++
Sbjct: 113 RVDEARNEITVELI 126
>gi|290953568|ref|ZP_06558189.1| transcription antitermination protein nusG [Francisella
tularensis subsp. holarctica URFT1]
gi|295313122|ref|ZP_06803811.1| transcription antitermination protein nusG [Francisella
tularensis subsp. holarctica URFT1]
Length = 57
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER+
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERK 57
>gi|153208021|ref|ZP_01946555.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177']
gi|154705911|ref|YP_001424274.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111]
gi|165918933|ref|ZP_02219019.1| transcriptional activator RfaH [Coxiella burnetii RSA 334]
gi|212218308|ref|YP_002305095.1| transcriptional activator [Coxiella burnetii CbuK_Q154]
gi|120576221|gb|EAX32845.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177']
gi|154355197|gb|ABS76659.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111]
gi|165917403|gb|EDR36007.1| transcriptional activator RfaH [Coxiella burnetii RSA 334]
gi|212012570|gb|ACJ19950.1| transcriptional activator [Coxiella burnetii CbuK_Q154]
Length = 167
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E+ A E+ L R G I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQERIAEEN----LERQGY-----RIYLPFIQVNRRRSGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N E + P F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNN-ETSAGVPPKVSLFQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + + RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFE-MHSGAKRVTLLLDMVGKVTRVEVPLDSV 164
>gi|297200225|ref|ZP_06917622.1| transcription antitermination protein [Streptomyces sviceus ATCC
29083]
gi|197713321|gb|EDY57355.1| transcription antitermination protein [Streptomyces sviceus ATCC
29083]
Length = 158
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
VG V ++DGPFA+ V +D +V + +FGR PVEL++
Sbjct: 8 VGASVTITDGPFATLRATVTEIDTPSQKVKGVIELFGRHAPVELSFT 54
>gi|317487905|ref|ZP_07946497.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|316913031|gb|EFV34548.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
Length = 170
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+VQ + E RL S ++ ++ E +P V +G+ FPG
Sbjct: 2 WYVVQTVAGREFAVC-----RLIESLVEGDVLQECFVPRYEVQKQFRGQWRTCTATLFPG 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+++ D++ ++ P L P+ E+ I E + S
Sbjct: 57 YLIVVTDRVDELESQLRRVPAFARVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGV 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ V GP ++ ++ K ++E+ +FGR ++ V K
Sbjct: 117 IEGDRIIVLKGPLVGRESWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168
>gi|325105016|ref|YP_004274670.1| NusG antitermination factor [Pedobacter saltans DSM 12145]
gi|324973864|gb|ADY52848.1| NusG antitermination factor [Pedobacter saltans DSM 12145]
Length = 169
Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 11/147 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY + EKK E+ L + G+ E+ +PS++++ RK + F
Sbjct: 9 RWYPIYTKPRFEKKVAEN----LLKQGI-----EVYLPSQKILKQWSDRKKWVDEPLFKS 59
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV I Y + TP V+ F+ + V D E+ + + + F
Sbjct: 60 YVFIHINYLQ--YDQVVRTPGVVRFIYFSGKIASVPDMEMNFLQTYLSGDFTVETTGQFI 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEK 150
+ G++V + G F + + + EK
Sbjct: 118 KSGDKVKIVSGKFKGYEAEMVSYQNEK 144
>gi|160941421|ref|ZP_02088757.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC
BAA-613]
gi|158435631|gb|EDP13398.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC
BAA-613]
Length = 160
Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 16/173 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV + EK I +L+ G L P E G E FPGY
Sbjct: 3 WYVVQVRTGEEK----DIAAKLTDMGFQTLA-----PVENRPVRSGGAWGTKEYVLFPGY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFF 123
V ++ Y+ +K P ++ L +T E E I + RP+ ++
Sbjct: 54 VFLQMDYNAGNYYRLKAVPGIVKLL-----SGTLTYLEAEWI-RLLAGQGGRPLEPTLMR 107
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E E + + G +F + +D+ R +E+ I G V+L E++
Sbjct: 108 ETEEGLEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLGIRLPEEV 160
>gi|262394904|ref|YP_003286758.1| transcriptional activator RfaH [Vibrio sp. Ex25]
gi|262338498|gb|ACY52293.1| transcriptional activator RfaH [Vibrio sp. Ex25]
Length = 166
Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + +A + L++ E P+ V + +G++ E FP
Sbjct: 3 RWYLLYCKRGEQVRA---------KQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFPC 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + +++ T V+ F+ G P V + +M + + S
Sbjct: 54 YVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNENTASECM 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G+++ V G FA + I + D EK + + +I RV
Sbjct: 114 PKPGDQIRVKSGQFAGIDAIFQEQDGEKRSIMLVQMITKRV 154
>gi|307942421|ref|ZP_07657772.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
gi|307774707|gb|EFO33917.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
Length = 206
Score = 40.8 bits (94), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV--VSVRKGRKVNSERRFFP 62
W +V CE++A G +++ + HL P ER+ V R + + + F
Sbjct: 41 WGVVYANPQCERRA---FAGLINQGVVAHL------PEERIERVQPRSKKTIVVNKPMFT 91
Query: 63 GYVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSP--VTDSEIEHIMNQVEAAVQRPVS 119
Y+ + + T+++ V G L SP + E+ ++ Q++ +R
Sbjct: 92 RYLFAGIDRQAGQDWSTVRECDGVEGVLSLDSAGSPYLIAAHEMVALIKQLDTG-ERIAD 150
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
F +VG+ + + G FA F V + V+ E +FGR T ++
Sbjct: 151 GTFIKVGQSLLLPKGVFAKFKMTVTAYKPDAETVYGEFSLFGRKTRIK 198
>gi|212212718|ref|YP_002303654.1| transcriptional activator [Coxiella burnetii CbuG_Q212]
gi|212011128|gb|ACJ18509.1| transcriptional activator [Coxiella burnetii CbuG_Q212]
Length = 167
Score = 40.8 bits (94), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E R+S L+ I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQE---------RISEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N E + P F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNN-ETSAGVPPKVSLFQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + + RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFE-MHSGAKRVTLLLDMVGKVTRVEVPLDSV 164
>gi|225440570|ref|XP_002276763.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297740266|emb|CBI30448.3| unnamed protein product [Vitis vinifera]
Length = 339
Score = 40.8 bits (94), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERR 59
+ P+W++V+V +++ E + L+R+ D + ++ +PS +V K ++ +
Sbjct: 97 LGPQWWVVRVSRVSGQESAERLARSLARNFPD-IDFKVYVPSVQVKRKLKNGSISVKPKP 155
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQ 109
FPG V ++ V+ + + I++ + GF+G+ P PV+ +IE I Q
Sbjct: 156 LFPGCVFLRCVLNKETHDFIRECDGIGGFVGSKVGNTKRQINKPRPVSVDDIEAIFKQ 213
>gi|77361554|ref|YP_341129.1| transcriptional activator RfaH [Pseudoalteromonas haloplanktis
TAC125]
gi|76876465|emb|CAI87687.1| putative Transcriptional activator RfaH [Pseudoalteromonas
haloplanktis TAC125]
Length = 161
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V C+ + E L G+ ++T +E++V KGR+ + FPGY
Sbjct: 4 WYLVV----CKPRQEERAQVNLKNQGIASFFPKLT--TEKLV---KGRRTVKQSALFPGY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
V + + + +K+T V GF+ G PV ++NQ++A S
Sbjct: 55 VFVCLEAENGNFFAVKNTRGVSGFVTYGAAYQRVPV------ELINQLKAERSHSHESQV 108
Query: 123 FEVGERVCVSDGPFASFNGIVKNVD 147
+ G+ V V++ F + + I K D
Sbjct: 109 PKNGDLVSVNNESFKNIDAIYKEPD 133
>gi|113969657|ref|YP_733450.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|114046887|ref|YP_737437.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
gi|113884341|gb|ABI38393.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|113888329|gb|ABI42380.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
Length = 166
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ + +
Sbjct: 55 LFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE++ DGPF GI + K R V I G++ + + VE++
Sbjct: 115 KTGEKIRFKDGPFIDLEGIFQEKCPNK-RCQVLFNIMGQIKTLTVPMQSVERV 166
>gi|148980746|ref|ZP_01816202.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3]
gi|145961096|gb|EDK26415.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3]
Length = 168
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ +K+A + L G++ +I + E+VV +G++ + FP
Sbjct: 3 RWYLLYCKRGDQKRAQQ----HLENQGVECFYPQIEV--EKVV---RGKEKVVKEPLFPS 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS------EIE-HIMNQVEAAVQ 115
YV ++ + T++ T V+ F+ G P V E+E H N VE
Sbjct: 54 YVFVRFDYEQGPSFTTVRSTRGVVDFIKFGAQPHEVQGDLVFELKELEMHCSNDVEDC-- 111
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
V FE G+ V ++ G FA I D E + + V + +V P+ +
Sbjct: 112 ----CVEFESGQVVKINSGQFAGIEAIFHQKDGEARSIML-VKMISQVVPISI 159
>gi|326202988|ref|ZP_08192855.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782]
gi|325987065|gb|EGD47894.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782]
Length = 176
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 11/181 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+ V S E++ V+ +++ D+ IP + G +
Sbjct: 1 MGMYWYILFVKSGREQR-VQQYMNKIA----DNETANPFIPLHEFLIKISGVVKRELKPL 55
Query: 61 FPGYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
FPGYV +++VM K+ I + ++ L + V +SE + ++N
Sbjct: 56 FPGYVFVESVMPGDEFLKKLNSRIHSSSDIVKVLKYSDTEIEVRESEKQMLLNLCNKR-H 114
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
SS G+R+ V++GP I++ ++ K + +E+ G V +A VEK
Sbjct: 115 CIESSRGIIRGDRIYVTNGPLKGRESIIRKINRHKKQALIEMDFMGDKRIVNVALEIVEK 174
Query: 176 I 176
+
Sbjct: 175 V 175
>gi|291279733|ref|YP_003496568.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1]
gi|290754435|dbj|BAI80812.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1]
Length = 163
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-LGTGENPSPVTDSEIEHIMNQVEAAVQR 116
+ FP Y+ ++ + D Y T+K T V LG P+ V D IE I +++
Sbjct: 49 KELFPNYLFVRFSVED--YRTVKYTKGVSRVVLGDNGEPAVVDDEIIEAIKGRMQDGFV- 105
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F+ GE+V + DGPF F + + + RV + + +E+ Y++++
Sbjct: 106 VLEEKGFKKGEKVLIKDGPFKGFEAVFLKEIKPRDRVLILLKTITGELKLEIDYDKLK 163
>gi|253578793|ref|ZP_04856064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849736|gb|EES77695.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 101
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 84 KVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFN 140
KVIG +GTG+ P+ EI+ +M +SS E +RV + GP
Sbjct: 7 KVIGLTKLIGTGDEIVPLVQEEIDLLMKIGTDKQLVEMSSGIIE-NDRVQILAGPLMGME 65
Query: 141 GIVKNVDEEKSRVHVEVVIFGR 162
G ++ +D K ++E+ +FGR
Sbjct: 66 GNIRRIDRHKRTAYLEIEMFGR 87
>gi|269960688|ref|ZP_06175060.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834765|gb|EEZ88852.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 166
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + +A + L++ E P+ V + +G++ E FP
Sbjct: 3 RWYLLYCKRGEQVRA---------KQHLENQGVECFYPTFEVEKILRGKRQKVEEPLFPC 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
YV + + +++ T V+ F+ G P + ++ + + Q++ V S
Sbjct: 54 YVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEIQ-GDLVYELKQLDKCVDEQASDEC 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V V G FA + I + D EK + + +I RV
Sbjct: 113 MPQPGDQVRVKSGQFAGIDAIFQEQDGEKRSIMLVQMITKRV 154
>gi|295106882|emb|CBL04425.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 162
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 58/144 (40%)
Query: 32 DHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT 91
D ++ E +P V +G FPGY+++ + ++ +K P+ L
Sbjct: 18 DDVLDECFVPQYEVQKHLRGEWRTCTAVLFPGYLIVVSDRIAELQAQLKQIPQFASVLNN 77
Query: 92 GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
P+ E+ I E + S G+++ V GP + G ++ ++ K
Sbjct: 78 DGTFIPLEPHEVAWIDAFTEKEHRVIGMSEGVIEGDQIVVLKGPLVNRTGWIRKINRRKR 137
Query: 152 RVHVEVVIFGRVTPVELAYNQVEK 175
++E+ +FGR ++ V K
Sbjct: 138 TAYLEIEMFGRTIQTKIGLGIVRK 161
>gi|307310231|ref|ZP_07589880.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
gi|306899783|gb|EFN30408.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
Length = 219
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP-- 62
W+ ++V++ EK +S L G+ LV P R R+GR + E + P
Sbjct: 52 WFALRVWTGREKIVEKS----LDAMGVRSLVPMRKGPDLR----RRGRVI--EGQMMPVI 101
Query: 63 -GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPV 118
GYVL++ + + + VI LG + P ++D+E+ +RPV
Sbjct: 102 HGYVLVQMMALSEYLAGLLGLEHVIDVLGGCDRPMRLSDNEVSRFNGLARNGNFDWERPV 161
Query: 119 SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GE V ++ GPF +V + + V V + + G PV + ++K+
Sbjct: 162 HLV-VRAGEPVWITAGPFCGRKATVVTPSKKGRGDVVVSIDLMGGEVPVTVPLALLKKL 219
>gi|229816235|ref|ZP_04446545.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM
13280]
gi|229808243|gb|EEP44035.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM
13280]
Length = 170
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 21/152 (13%)
Query: 35 VTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGE 93
V + +P V + G+ + FPGYV ++ ++ + P L G+
Sbjct: 28 VDDCFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQIREALGRVPAFTRMLTSAGD 87
Query: 94 NPSPVTDSEIE----------HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
P+T E+ H+M E ++ G+ V V GP +
Sbjct: 88 TCLPLTADEVAWINAITNVDTHVMEMSEGVIE----------GDCVMVIRGPLKGHEARI 137
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+D K V++ +FGR + + V K
Sbjct: 138 TRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169
>gi|117919822|ref|YP_869014.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
gi|117612154|gb|ABK47608.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
Length = 166
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ L +L T + + SE ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNLA-------LQNLETYLPMVSEE--KSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ I + + T V + E +P+ D I I M ++ + +
Sbjct: 55 LFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ GE++ DGPF GI + K R HV I G+
Sbjct: 115 KTGEKIRFKDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQ 152
>gi|269137513|ref|YP_003294213.1| transcriptional activator RfaH [Edwardsiella tarda EIB202]
gi|267983173|gb|ACY83002.1| transcriptional activator RfaH [Edwardsiella tarda EIB202]
gi|304557587|gb|ADM40251.1| Transcriptional activator RfaH [Edwardsiella tarda FL6-60]
Length = 163
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ + L+R + + IT+ E+VV +G++ + FP Y
Sbjct: 4 WYLL----YCKRGQLTRAREHLTRQEIPCVTPMITL--EKVV---RGKRTQVQEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQRPVSSV 121
+ I+ T++ T V F+ G+ P+ V S ++ +M A Q P+
Sbjct: 55 MFIELDPERIHTTTVQSTRGVSHFVRFGKLPATVPFSIVKQLMMAPTPTAIAPQTPIP-- 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEK 150
G+RV ++ G F+ I + D EK
Sbjct: 113 ----GDRVRITQGAFSGMEAIYRESDGEK 137
>gi|327401544|ref|YP_004342383.1| NusG antitermination factor [Archaeoglobus veneficus SNP6]
gi|327317052|gb|AEA47668.1| NusG antitermination factor [Archaeoglobus veneficus SNP6]
Length = 151
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYV+++A + + I+ P V G + GE V SEIEH + +AA Q
Sbjct: 41 LKGYVIVEAEKMEDLLKAIRGLPHVKGVV-KGE----VNFSEIEHFLTPRKAAEQ----- 90
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ G V + GPF +VK VDE K+ + VE++
Sbjct: 91 --IKEGFTVEIISGPFKGELAVVKRVDEAKNEITVELI 126
>gi|313672417|ref|YP_004050528.1| nusg antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
gi|312939173|gb|ADR18365.1| NusG antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
Length = 164
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ +K+ + + L+ +GL+ L +I ++ +VR +K E FP Y
Sbjct: 3 WYLI--YTKVKKE--DFLEQLLTEAGLEVLNPKI----KKTKNVRNMKKEVIEP-LFPCY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSSVFF 123
+ +KA + ++ I + I L G NP+ V I+ I ++ V+ + S F
Sbjct: 54 IFVKADLN--IHLRIIRYTQGIRRLVGGSNPTVVPIEIIDTIKSKMVDGFID--TKSEEF 109
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ + + DGPF F GI + + K RV + + + + + +EK+
Sbjct: 110 KKGDTILIKDGPFKDFIGIFQEELDSKGRVSILLKTLALQPRITVDKDMIEKL 162
>gi|254283967|ref|ZP_04958935.1| Transcription termination factor nusG domain protein [gamma
proteobacterium NOR51-B]
gi|219680170|gb|EED36519.1| Transcription termination factor nusG domain protein [gamma
proteobacterium NOR51-B]
Length = 214
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V E A +L R G I ++ ++G+ FPG
Sbjct: 22 RWYVVASKPRSEGVAKS----QLERQGFVTCAPRI-----KLRKRQRGKWQQVIEPLFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ + + I+ T IG + G PV ++ ++ +++ E+ S F
Sbjct: 73 YLFVALRLGVDDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSIGESPD---ASEAVF 129
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G+ V GPF +GI K + + + R V + + G
Sbjct: 130 QPGQAVRFEAGPFEGLSGIFK-MPKGQDRAEVLITLLG 166
>gi|194334318|ref|YP_002016178.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
gi|194312136|gb|ACF46531.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 172
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + L G+ + + + R S RK +KV+ F GY
Sbjct: 9 WYAVYVRSRFEKK----VHLLLQEKGIVSFLP--LVDTWRQWSDRK-KKVSMP--LFRGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
V ++ + + + + DT V+ F+G G S + D +IE I + E V++ V +
Sbjct: 60 VFVR-IHYRQDHPFVLDTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPL-L 117
Query: 124 EVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFG 161
G++V V GPF G+V K+ E K V+ E ++ G
Sbjct: 118 PPGKQVKVIAGPFVGLEGVVRKDGRESKLVVYFESIMQG 156
>gi|311747951|ref|ZP_07721736.1| NusG antitermination factor [Algoriphagus sp. PR1]
gi|126574924|gb|EAZ79282.1| NusG antitermination factor [Algoriphagus sp. PR1]
Length = 170
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 11/138 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ S EKK + RL +G E+ +P + RK E+ F G
Sbjct: 5 KWFVMYTASRSEKK----VAKRLRENG-----KEVYLPIIEEIRQWSDRKKKVEKPLFNG 55
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K ++++ ++ P + F+ + V D E+E I + V
Sbjct: 56 YVFVKTT-RNQLWECLQ-VPGAVKFVHFSGQHATVRDEELETIERIISTGVAVESDGSVI 113
Query: 124 EVGERVCVSDGPFASFNG 141
E GE+V V G G
Sbjct: 114 EAGEKVEVIGGALQHMTG 131
>gi|261368740|ref|ZP_05981623.1| putative transcription termination factor NusG [Subdoligranulum
variabile DSM 15176]
gi|282569162|gb|EFB74697.1| putative transcription termination factor NusG [Subdoligranulum
variabile DSM 15176]
Length = 185
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK----GRKVNSERRFF 61
Y++QV + EK I GRL ++G IP+ +VR+ GR +
Sbjct: 4 YVLQVITGREK----DICGRLRKAG---------IPAYCPRAVRQIRRGGRWQEQTYTLY 50
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
P Y+ ++ VY+ ++ V+ +LG T P P++ E +I+ Q PVS
Sbjct: 51 PAYIFVQCERVVDVYYAVRREDGVLYWLGATRGTPEPLSADEEANILWLAGDGPQ-PVSK 109
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDE 148
VC +DG +G +K + E
Sbjct: 110 A-------VCRADGSLDFTSGPLKRLAE 130
>gi|21593340|gb|AAM65289.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEA 112
FPG + I+ ++ +++ +I+D V GF+ + P PV DS++E I Q +
Sbjct: 154 FPGCIFIRCILNKEIHDSIRDVDGVGGFIVSKVGNTKRQINKPRPVDDSDLEAIFKQAKE 213
Query: 113 AVQRPVS 119
A ++ S
Sbjct: 214 AQEKADS 220
>gi|150396868|ref|YP_001327335.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
gi|150028383|gb|ABR60500.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
Length = 219
Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 20/180 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP- 62
W+ ++V++ EK +S LD + +P + +R+ GR + E + P
Sbjct: 52 WFALRVWTGREKTVEKS---------LDIMAVRSLVPMRKGPDLRRRGRVI--EGQMMPV 100
Query: 63 --GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRP 117
GYVL++ + + + VI LG E P ++D E+ +RP
Sbjct: 101 IHGYVLVQMMALSEYLAGLLGVEHVIDVLGGCERPMRLSDKEVNRFNGLARNGNFDWERP 160
Query: 118 VSSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V GE V ++ GPF ++ + + V V + G PV + ++K+
Sbjct: 161 VDLV-VRAGEPVLITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALLKKL 219
>gi|114775633|ref|ZP_01451201.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1]
gi|114553744|gb|EAU56125.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1]
Length = 172
Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ ++V E A + L R G E+ +P G+ R FF G
Sbjct: 5 QWFAIRVKPRQESLAAAN----LERQGF-----EVYLPMINTRISHAGKVSWQPRPFFAG 55
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-----EIEHIMNQVEAAVQRPV 118
Y+ + + ++ + TI+ T V+ + G P++D + H N + A P
Sbjct: 56 YLFVHLSIDEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVSSTPE 115
Query: 119 SSVFFEVGERVCVSDGPFASFNGI 142
S F GE+V + DG G+
Sbjct: 116 SP--FRAGEKVRMLDGAMKGLEGV 137
>gi|218710232|ref|YP_002417853.1| transcriptional activator RfaH [Vibrio splendidus LGP32]
gi|218323251|emb|CAV19428.1| Transcription antiterminator [Vibrio splendidus LGP32]
Length = 168
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ +K+A + L G++ +I + E+VV +G++ + FP
Sbjct: 3 RWYLLYCKRGDQKRAQQ----HLENQGVECFYPQIEV--EKVV---RGKEKLVQEPLFPS 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SS 120
Y+ ++ + T++ T V+ F+ G P V ++ + + E V
Sbjct: 54 YIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEV-QGDLVFELKEFEKCCSSEVEDCC 112
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
V FE G+ V ++ G FA I D E + + V + +V P+ +
Sbjct: 113 VEFETGQVVKINSGQFAGVEAIYHQKDGEARSIML-VKMISQVVPISI 159
>gi|197336161|ref|YP_002155565.1| transcriptional activator RfaH [Vibrio fischeri MJ11]
gi|197317651|gb|ACH67098.1| transcriptional activator RfaH [Vibrio fischeri MJ11]
Length = 164
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 11/160 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ E ++ L++ + E P V + +G++ ++ FP Y
Sbjct: 4 WYLLY----CKRGEQER-----AKLHLENQMVECFYPEIVVEKIVRGKRKQAKEPLFPCY 54
Query: 65 VLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ I + +I+ T V F+ G P V ++ + + ++ +
Sbjct: 55 MFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPK-VLQGDLIYSLKALDENNNKEKLECLP 113
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
E G++V + GP++ I K D EK + + +I +V
Sbjct: 114 EAGQKVAIKKGPYSGIEAIYKEADGEKRSILLITLINKKV 153
>gi|238899141|ref|YP_002924823.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466901|gb|ACQ68675.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 162
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ V L R + L +T+ E+ + +GR++ E FP Y
Sbjct: 4 WYLL----YCKRGQVFRAQEHLERQKVSFLTPLVTV--EKCL---RGRRIQVEEPLFPNY 54
Query: 65 VLIKAVMTDKVYHT--IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I ++ HT IK T V F+ G + V D + I + SV
Sbjct: 55 LFIH--FDPEMIHTTCIKATRGVRDFVRFGNQLAVVPDIVVTQIQQRTFD------KSVD 106
Query: 123 FEV---GERVCVSDGPFASFNGIVKNVDEE 149
F + G+ V ++DGPF I D E
Sbjct: 107 FRIPTPGDLVSITDGPFVGLQAIYSQPDGE 136
>gi|92117920|ref|YP_577649.1| NusG antitermination factor [Nitrobacter hamburgensis X14]
gi|91800814|gb|ABE63189.1| transcription antitermination protein nusG [Nitrobacter
hamburgensis X14]
Length = 196
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 32/194 (16%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI--TIPSERVVSVRKGRKVNSE--RRF 60
WY++Q E KA + R G D + +P+ R KGRK+ E R
Sbjct: 7 WYVLQTRPAHEDKAARGLVAR----GFDPYAPVVYRRVPTGRRDD--KGRKLTREIARPM 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTD--------SEIEHIMNQV 110
FPGY+ ++ D+ + ++ P + G+L GE P V D SE E +
Sbjct: 61 FPGYIFVQFDAGDEKFAEVRIVPGITGYLKDEAGE-PQAVPDVAMDLIAVSETEEFGRYL 119
Query: 111 EAAV----------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ +R F+ G+ V V G + + V D + RV + IF
Sbjct: 120 DEEERARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVLLFHIF 178
Query: 161 GRVTPVELAYNQVE 174
GR T + +E
Sbjct: 179 GRETKIHADQADLE 192
>gi|294140235|ref|YP_003556213.1| transcriptional activator rfaH [Shewanella violacea DSS12]
gi|293326704|dbj|BAJ01435.1| transcriptional activator rfaH, putative [Shewanella violacea
DSS12]
Length = 180
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI-TIPSERVVSVRKGRKVNSERRFFPG 63
WY++ E +AV ++ L + T + TI E+ V KG+ + FPG
Sbjct: 4 WYLLYCKPRGEARAVHNLT-------LQEIETYLPTIGEEKRV---KGQIIVKRIPLFPG 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI------EH-IMNQV------ 110
Y+ I I T V +G E + V DS I EH +++++
Sbjct: 54 YLFIYFDPQITSVARIHSTRGVGRIVGCKELMTTVDDSIIHSIKMREHKLLSELLPELKL 113
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
A + P + V F GE++ ++GPFA GI + + +K R HV I G+
Sbjct: 114 EGADAQELPATEVEFSPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFDIMGQ 166
>gi|119775400|ref|YP_928140.1| transcriptional activator rfaH [Shewanella amazonensis SB2B]
gi|119767900|gb|ABM00471.1| transcriptional activator rfaH, putative [Shewanella amazonensis
SB2B]
Length = 167
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFPG 63
WY++ E +A ++ LS L E +P R G V+ SE FP
Sbjct: 4 WYLIYCKPRNEMRAQQN----LSMQNL-----ETYLPKHRKQVKASGGAVSVSESVLFPN 54
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEA-AVQRPVS 119
Y+ ++ +I T V +G E +P+ D+ I + QVE A ++P++
Sbjct: 55 YLFVQFDPEVTSVRSIHATRGVSRIVGCSEQMTPIDDALIRALKRKELQVEKLACEKPLA 114
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GERV GPF+ I D K R V G+ +++ + + +I
Sbjct: 115 A-----GERVKFCAGPFSDLEAIFLESDGNK-RCQVLFEFMGQQKQLDVESSSIVRIC 166
>gi|59711410|ref|YP_204186.1| transcriptional activator RfaH [Vibrio fischeri ES114]
gi|59479511|gb|AAW85298.1| DNA-binding transcriptional antiterminator [Vibrio fischeri ES114]
Length = 164
Score = 38.1 bits (87), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ C++ E ++ L++ + E P V + +G++ + FP
Sbjct: 3 QWYLLY----CKRGEQER-----AKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFPC 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ I + +I+ T V F+ G P V ++ + + ++ +
Sbjct: 54 YMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPK-VLQGDLIYSLKALDENNNKEKLECL 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
E G++V + +GP++ I K D EK + + +I +V
Sbjct: 113 PEAGQKVAIKEGPYSGIEAIYKEADGEKRSILLITLINKKV 153
>gi|221134306|ref|ZP_03560611.1| transcriptional activator RfaH [Glaciecola sp. HTCC2999]
Length = 176
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ + E +AV L+ G+D P + V +G++ E FP Y
Sbjct: 17 WYLLYCKAKEEGRAVM----HLANQGIDAFY-----PKANITKVLRGKRQTVEEALFPNY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
V + + +++ T VIGF+ G++ V+ + I+
Sbjct: 68 VFAQLDHDVHNFTSVRSTRGVIGFVKQGKDYQKVSQALID 107
>gi|312113215|ref|YP_004010811.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
gi|311218344|gb|ADP69712.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
Length = 172
Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERRFFP 62
+W ++ + + E AVE+ L+R V VR R+ ++ R FP
Sbjct: 11 KWVVLTTHPHRENFAVEN----LARQDFTAYCPMT------VKHVRHARRAYDAPRPLFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
GYV ++ + I T V L G++P+ + IE + +++ + +P + +
Sbjct: 61 GYVFVEHQSAFQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAREMDGVISKPEAPL 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
+ G+ V +S GP F+G+V + E + R
Sbjct: 121 --KAGQTVTISGGP---FDGLVGQILEFRER 146
>gi|153834091|ref|ZP_01986758.1| transcriptional activator RfaH [Vibrio harveyi HY01]
gi|148869556|gb|EDL68551.1| transcriptional activator RfaH [Vibrio harveyi HY01]
Length = 166
Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + +A + L++ E P+ V + +G++ E FP
Sbjct: 3 RWYLLYCKRGEQVRA---------KQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFPC 53
Query: 64 YVLIKAVMTDKV-YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + + + +++ T V+ F+ G P V ++ + + Q++ + +
Sbjct: 54 YVFARFDYEEGPNFTSVRSTRGVVDFVRFGAQPKEVQ-GDLVYELKQLDKCIDDQTDAEN 112
Query: 123 F-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V V G FA + I + D EK + + +I RV
Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEKRSIMLVQMITKRV 154
>gi|238918124|ref|YP_002931638.1| transcriptional activator RfaH [Edwardsiella ictaluri 93-146]
gi|238867692|gb|ACR67403.1| transcriptional activator RfaH, putative [Edwardsiella ictaluri
93-146]
Length = 163
Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ + L+R + ++ IT+ E+VV +G++ + FP Y
Sbjct: 4 WYLL----YCKRGQLTRAREHLTRQEIPCVIPMITL--EKVV---RGKRTQVQEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ T++ T V F+ G+ P+ V S ++ +M P + +
Sbjct: 55 MFIELDPERIHTTTVQSTRGVSHFIRFGKLPAIVPFSIVKPLMMTPALTAIAPQTPI--- 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEK 150
G+RV ++ G F I + D EK
Sbjct: 112 PGDRVRITQGAFNGIEAIYRESDGEK 137
>gi|325103553|ref|YP_004273207.1| NGN domain-containing protein [Pedobacter saltans DSM 12145]
gi|324972401|gb|ADY51385.1| NGN domain-containing protein [Pedobacter saltans DSM 12145]
Length = 180
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
++ +W+++ + EKK + L + G+D P ++V S R E
Sbjct: 17 LSKQWFVIYTRTRWEKK----VDTLLKQKGIDSYC-----PLKKVRSKWADRIKTVELPL 67
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
F YV + +++ ++ T VI F+ P+ V + EIE I + + + VSS
Sbjct: 68 FTSYVFVNINYKEEL--KVRQTHGVINFIYYMGKPAVVRNQEIEEIQDILVKNREIEVSS 125
Query: 121 VF-FEVGERVCVSDGPFASFN 140
+ +G+RV + +G A FN
Sbjct: 126 IRDLNIGDRVLIKNG--ALFN 144
>gi|220928294|ref|YP_002505203.1| NusG antitermination factor [Clostridium cellulolyticum H10]
gi|219998622|gb|ACL75223.1| NusG antitermination factor [Clostridium cellulolyticum H10]
Length = 173
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 35/189 (18%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFPG 63
WY++ V + E+ + + RL + L +ER+ +K VN FPG
Sbjct: 3 WYVLFVRTGREENVKKLLSKRLDKD----LFLPFVPLNERIF--KKAGTVNKNMEILFPG 56
Query: 64 YVLIKAV--------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
YV I++ MT+++ +++D +++ + S+IE + + E +
Sbjct: 57 YVFIESKVASQEFVKMTNELMKSLQDIIRLVRY------------SDIEIAVRESERIIL 104
Query: 116 RPV--------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ + SS G+++ + DGP IV++++ K +E+ G + V
Sbjct: 105 QSLYNNNNCIESSSGIIKGDKIYIIDGPLRGRESIVRHINRHKREAKIEIEFMGNIRLVS 164
Query: 168 LAYNQVEKI 176
++ V+K+
Sbjct: 165 VSLEIVQKL 173
>gi|224023977|ref|ZP_03642343.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM
18228]
gi|224017199|gb|EEF75211.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM
18228]
Length = 175
Score = 37.4 bits (85), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V + EKK E +G + G++H +P + VV R+ + P
Sbjct: 6 WYAMYVRMHHEKKVAEKLG----QMGVEHY-----LPVQEVVRQWSDRRKKLQVVVIPMM 56
Query: 65 VLIKAVMTDKV-YHTIKDTPKVIGFL--GTGENPSPVTDSEIEH---IMNQVEAAVQRPV 118
+ I+A +++V +++ P V G L P+ + D E++ +++ E AV
Sbjct: 57 IFIRA--SEQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAVH--F 112
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+++ V GP A +G + +D KS+V V + G + VE+ VE
Sbjct: 113 INTPLAPGQKIRVIKGPLAGLDGELTEID-GKSQVMVRIEQLGYAS-VEMPVGYVE 166
>gi|196231071|ref|ZP_03129931.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
gi|196224901|gb|EDY19411.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
Length = 186
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
S R+G +E FP Y+ + + ++ V G + G++ V ++ +
Sbjct: 55 STRRGLVWFTEA-LFPNYLFARFEWVQS-HALVRSCQGVSGIVRFGDHVPEVPAGTLDDL 112
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+E A + VS E G+ V + +GPF NG+VK + + RV V + + G T V
Sbjct: 113 RAYMEDAELKTVSFNIDE-GDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGGATEV 171
Query: 167 ELAYNQVEK 175
+L V K
Sbjct: 172 DLCLTSVFK 180
>gi|163782751|ref|ZP_02177747.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
gi|159881872|gb|EDP75380.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
Length = 198
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ +K D + T ++ V+GFL G +TD E+ + +VE + + ++
Sbjct: 89 GYLFVKGRYEDILSKT-ENLLDVVGFLIMGGKVRTLTDEEVSDLQKRVEKGER--LKTLL 145
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEE---KSRVHVEVVIFGRVTPVE 167
E G RV V G + G+++ V E+ K ++ + F + P+E
Sbjct: 146 PERGMRVKVVSGEWTGAEGVIEEVYEDLSLKLKLRLWDKTFTAILPLE 193
>gi|163750517|ref|ZP_02157755.1| transcriptional activator rfaH, putative [Shewanella benthica KT99]
gi|161329672|gb|EDQ00661.1| transcriptional activator rfaH, putative [Shewanella benthica KT99]
Length = 180
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI-TIPSERVVSVRKGRKVNSERRFFPG 63
WY++ E +AV + L + T + TI E V KG+ + FPG
Sbjct: 4 WYLLYCKPRGEARAVHHLT-------LQEIETYLPTIGEEEKV---KGQVIVKRIPLFPG 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI------EH-----IMNQVEA 112
Y+ I I T V +G E+ + V D+ I EH ++ + +A
Sbjct: 54 YLFIYFDPQITSVARIHSTRGVGRIVGCKESMTTVDDNIIHSIKMREHKLLSELLPEYKA 113
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ + PV+ + F GE++ ++GPFA GI + + +K R HV I G+
Sbjct: 114 EGAGSDELPVTDIEFTPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFEIMGQ 166
>gi|46446232|ref|YP_007597.1| putative transcription antitermination factor NusG [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399873|emb|CAF23322.1| putative transcription antitermination factor NusG [Candidatus
Protochlamydia amoebophila UWE25]
Length = 67
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
+WY+VQV S EKK +++ L G+ + +I +P+E V V+K
Sbjct: 3 KWYVVQVLSTHEKKVKKALEEHLELKGMSGEIEQILLPTENVSEVKK 49
>gi|309797734|ref|ZP_07692119.1| transcription termination factor NusG [Escherichia coli MS 145-7]
gi|308118654|gb|EFO55916.1| transcription termination factor NusG [Escherichia coli MS 145-7]
Length = 169
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF--FP 62
WY++Q ++ AV + RL+ S + TE ++++S R ERR FP
Sbjct: 3 WYVLQ-FTTTRFAAVFAHLERLNFSYFCPMETERYRRPDKIISYR-------ERRLPLFP 54
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
GY+ I+A + TI P V F+ G P PV + + ++
Sbjct: 55 GYLFIQADFEEVHSTTITAIPYVQRFISFGGEPLPVPEDVMAELL 99
>gi|29348295|ref|NP_811798.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|253569339|ref|ZP_04846749.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29340198|gb|AAO77992.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841358|gb|EES69439.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 168
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +V V SN EKK E RLS G + +P + R +R P
Sbjct: 7 WLVVCVQSNREKKTYE----RLSALGFESF-----LPLQEETRRWSDRSKKVQRVVIPMV 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-GEN-PSPVTDSEIEH---IMNQVEAAVQRPVS 119
V + ++++ ++ P V F+ GE+ P+ + D+++E +++ E AV+ +
Sbjct: 58 VFARIAPSERI--SVLRLPSVSRFMVLRGESAPAIIPDAQMERFRFMLDYSEEAVE--MC 113
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + GE+V V GP G + +D KS+V V + + G VE+ VE+I
Sbjct: 114 SERIQPGEQVKVIKGPLTGLTGELITMD-GKSKVAVRINMLGAAM-VEVPVGFVERI 168
>gi|308069775|ref|YP_003871380.1| hypothetical protein PPE_03019 [Paenibacillus polymyxa E681]
gi|305859054|gb|ADM70842.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 173
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 60 FFPGYVLIKAVMTDKVYHT-----IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
FP YV I++ + D + T I + +I L + + + DSE + + + +
Sbjct: 53 LFPSYVFIESNLPDLQFVTSTNSMICTSSDIIRLLRYSKYEASMRDSEKQMLESLCNDSY 112
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
S+ E G+ + + DGP IVK +D K + +++ G + V +A +
Sbjct: 113 CIESSTGIIE-GDNIRILDGPLKGRGSIVKKIDRHKRQAVIQLEFMGDIRLVRVALEIIS 171
Query: 175 KI 176
K+
Sbjct: 172 KV 173
>gi|255530460|ref|YP_003090832.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366]
gi|255343444|gb|ACU02770.1| NGN domain protein [Pedobacter heparinus DSM 2366]
Length = 168
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y N E+KA+ ++ L + + L P ++V RK E FP Y
Sbjct: 10 WYVVVTYPNLERKALLNL---LKNNFIAFL------PLQKVQRKWSDRKKTIEIPLFPNY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + +K D V ++ G P+ +++++I +I VE+ S+
Sbjct: 61 LFIN--INEKDRFEALDIYGVKRYVTFGGRPAFISETDILNIKRIVESVDLYIEHSLV-- 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + GPF GI+ ++R + V + +E+ + + K+
Sbjct: 117 KGDAVKIIGGPFKDMIGILFK-KSGQARFGIRVESMNQTLSIEICHTLIRKV 167
>gi|156973628|ref|YP_001444535.1| transcriptional activator RfaH [Vibrio harveyi ATCC BAA-1116]
gi|156525222|gb|ABU70308.1| hypothetical protein VIBHAR_01331 [Vibrio harveyi ATCC BAA-1116]
Length = 166
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + +A + L++ E P+ V + G++ E FP
Sbjct: 3 RWYLLYCKRGEQVRA---------KQHLENQGVECFYPTVEVEKILHGKRQKVEEPLFPC 53
Query: 64 YVLIKAVMTDKV-YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
YV + + + +++ T V+ F+ G P + ++ + + Q++ + +
Sbjct: 54 YVFARFDYEEGPNFTSVRSTRGVVDFVRFGVQPKEIQ-GDLVYELKQLDKCIDDQTDAES 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V V G FA + I + D EK + + +I RV
Sbjct: 113 MLKPGDQVRVKSGQFAGIDAIFQEQDGEKRSIMLVQMITKRV 154
>gi|157376165|ref|YP_001474765.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
gi|157318539|gb|ABV37637.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
Length = 179
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 23/177 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A+++ L E +P+ V +KG+ + FP Y
Sbjct: 4 WYLLYCKPRGESRALQN---------LTIQNIETYLPTIAVKKEQKGQVSVVKTSLFPSY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------VE 111
+ IK + I T V+ +G E +P+ D I+ I Q +
Sbjct: 55 LFIKFDPKEVSVSRINSTRGVVQVVGCKELMTPIDDGIIDAIRQQEYELNSMTQGSTDIG 114
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
++ GE+V +++G F++ GI + +K R HV I G + V++
Sbjct: 115 SSSNEEFEPKVINPGEKVRLTEGVFSTLEGIFQEKSGDK-RCHVLFEIMGEMKSVKI 170
>gi|282164804|ref|YP_003357189.1| putative ribosomal protein L26e [Methanocella paludicola SANAE]
gi|282157118|dbj|BAI62206.1| putative ribosomal protein L26e [Methanocella paludicola SANAE]
Length = 162
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 31/156 (19%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T + V+ +N E+ I + G D + I +P E
Sbjct: 13 TASVFAVKTTANQERSVANLIAMVARKEGYD--IRSILVPEE-----------------L 53
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL+++ M + V HTI++ P + + +E++H + +PV +
Sbjct: 54 KGYVLVESPMHEIVEHTIQNIPHAKAVVKGAS-----SIAEVQHFL------APKPVVTG 102
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
E G+ V + GPF VK VDE K + VE+
Sbjct: 103 ISE-GDIVELISGPFKGERARVKRVDETKEEITVEL 137
>gi|139436873|ref|ZP_01771033.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC
25986]
gi|133776520|gb|EBA40340.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC
25986]
Length = 167
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI---M 107
G V++ + FPGY++ V + L P+ E + I
Sbjct: 30 GEWVSTTKPLFPGYLICDTADPRTVQQYLLRMDDFARVLSQDGQFVPLAKEETQLIGSFT 89
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
N+ + V P+S + G++V V+ GP G++K ++ KS ++E+ + GR
Sbjct: 90 NRGDRVV--PMSEALKD-GDQVVVTAGPLLGHEGLIKTINRRKSTAYLELDLCGR 141
>gi|307694396|ref|ZP_07636633.1| NusG antitermination factor [Ruminococcaceae bacterium D16]
Length = 165
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Query: 28 RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIG 87
R L L +P E G PGYV + + + Y+ +K P V+
Sbjct: 12 RDALQTLGIRAAVPREERAIRSGGGWTTKVYTLLPGYVFLALEYSAENYYRVKAIPHVLR 71
Query: 88 FLG-TGENPSPVTDSEIE--HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVK 144
FLG G +PS +T E+E +++ ++ E G R+ +G F
Sbjct: 72 FLGPNGLSPSYLTHLEVEWLRLLDNGGEVLKPSRVETLPEGGVRIV--EGVLRHFPVSRI 129
Query: 145 NVDEEKSRVHVEVVIFGRVTPVELA 169
++D+ R VE+ + G + + L+
Sbjct: 130 DLDKRARRAKVEISLCGELKTLTLS 154
>gi|163802557|ref|ZP_02196449.1| transcriptional activator RfaH [Vibrio sp. AND4]
gi|159173640|gb|EDP58459.1| transcriptional activator RfaH [Vibrio sp. AND4]
Length = 166
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + +A + L++ E P+ V + +G++ E FP
Sbjct: 3 RWYLLYCKRGEQVRA---------KQHLENQGVECFYPTLEVEKILRGKRQKVEEPLFPC 53
Query: 64 YVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + + +++ T V+ F+ G P V ++ + + Q++ V +
Sbjct: 54 YVFARFDYEKGPNFTSVRSTRGVVDFVRFGAQPKEVQ-GDLIYELKQLDKCVDDHTDAKN 112
Query: 123 F-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G+ V V G FA + I + D EK + + +I RV
Sbjct: 113 MPKPGDEVRVKSGQFAGIDAIFQEQDGEKRSIMLVQMITKRV 154
>gi|242398372|ref|YP_002993796.1| NusG transcription antitermination protein [Thermococcus sibiricus
MM 739]
gi|242264765|gb|ACS89447.1| NusG transcription antitermination protein [Thermococcus sibiricus
MM 739]
Length = 155
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A V I+ G L P P++ EIEH + + +P S
Sbjct: 48 GYIFVEATEKAAVDEVIRGIRHAKGTL-----PGPISFIEIEHFLEE------KPAVS-G 95
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FE G+ V + GPF V VDE K + VE++ G + P+
Sbjct: 96 FEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVELI--GAIVPI 137
>gi|294660581|ref|NP_853429.2| transcription termination factor NusG [Mycoplasma gallisepticum
str. R(low)]
gi|7109682|gb|AAF36753.1| transcription antitermination factor NusG [Mycoplasma
gallisepticum]
gi|284812244|gb|AAP56997.2| transcription termination factor NusG [Mycoplasma gallisepticum
str. R(low)]
gi|284930926|gb|ADC30865.1| transcription termination factor NusG [Mycoplasma gallisepticum
str. R(high)]
gi|284931682|gb|ADC31620.1| transcription termination factor NusG [Mycoplasma gallisepticum
str. F]
Length = 267
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN 108
+PGY+ IK M + + +++T + G +G+ G P P++ SE ++N
Sbjct: 95 YPGYIYIKMEMNEAAWFAVRNTVNITGIVGSSGKGAKPIPISSSEELDLLN 145
>gi|127512329|ref|YP_001093526.1| NusG antitermination factor [Shewanella loihica PV-4]
gi|126637624|gb|ABO23267.1| transcription antitermination protein nusG [Shewanella loihica
PV-4]
Length = 175
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 22/169 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V E +A +++ + + L L +IT + G+ FP Y
Sbjct: 4 WYLVYCKPRGETRAQQNLALQQIETYLPTLPQQIT---------KSGKNSVKRLPLFPCY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----AVQRPVSS 120
+ I + I T V +G E + + D+ I H + EA A+Q P
Sbjct: 55 LFIYFDPLEISVSKIHSTRGVSRIIGCREEMTAIDDA-IVHSIRMREAKLLNALQLPSDD 113
Query: 121 VF-------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ VG++V +GPF GI + +K R H+ I G+
Sbjct: 114 LLSGNAEPRLSVGDKVKFVEGPFKELEGIFEEQSGDK-RCHILFEIMGQ 161
>gi|39996910|ref|NP_952861.1| hypothetical protein GSU1811 [Geobacter sulfurreducens PCA]
gi|39983798|gb|AAR35188.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
gi|307634933|gb|ADI84646.2| SPOR domain protein [Geobacter sulfurreducens KN400]
Length = 260
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVN 55
Y VQV S+ E+K ++I +L+ G VTE TIP + VR GRK++
Sbjct: 190 YSVQVASSKERKDADAIRAKLAEKGFSAYVTESTIPGKGTWYRVRVGRKLD 240
>gi|315229956|ref|YP_004070392.1| NusG-like transcription antitermination protein [Thermococcus
barophilus MP]
gi|315182984|gb|ADT83169.1| NusG-like transcription antitermination protein [Thermococcus
barophilus MP]
Length = 152
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+A V I+ G L P V SEIEH + + +P S
Sbjct: 45 GYIFIEAPSKSAVDEAIRGIRHARGTL-----PGEVAFSEIEHFLEE------KPAVS-G 92
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FE G+ V + GPF V VDE K + VE++ G + P+
Sbjct: 93 FEPGDIVELIAGPFKGEKAKVIRVDEAKDEIVVELI--GAIVPI 134
>gi|295132413|ref|YP_003583089.1| NusG antitermination factor [Zunongwangia profunda SM-A87]
gi|294980428|gb|ADF50893.1| NusG antitermination factor [Zunongwangia profunda SM-A87]
Length = 164
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E K + RL + G+ E+ P + + RK F Y
Sbjct: 3 WYVIYTKPKSEIKTAQ----RLEKIGV-----EVFCPVKNEIRQWSDRKKKFTVPLFTSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ + +K + + P V +L P+ V D+EI+ I V + + +
Sbjct: 54 LFVR--LEEKDRAIVFEVPGVNNYLFWLGQPAIVRDNEIDIIKKWVNDDAVEDIQLMHLK 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRV 153
G+R+ + G F +V+ + + + ++
Sbjct: 112 AGDRLIIKKGAFKDREAVVQKIGKRRCKL 140
>gi|126668070|ref|ZP_01739033.1| acetolactate synthase II large subunit [Marinobacter sp. ELB17]
gi|126627461|gb|EAZ98095.1| acetolactate synthase II large subunit [Marinobacter sp. ELB17]
Length = 494
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 9 QVYSNCE--KKAVESIGGRLSRSGLDHLVTEIT--IPSERVVSVRKGRKVNSERRFFPGY 64
Q +C+ KK ES+G S +G+ ++ EIT +P++ V S G +R+ P +
Sbjct: 291 QQRKDCDLSKKESESVGAGQSYAGMTQVIREITALLPADAVYSFGAGNHCLWAQRYLPTH 350
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
+ T ++ L + E S V + E +MN+ E
Sbjct: 351 TFPSQLSTRNGAMGYSLPAGIVAALESPERLSVVVTGDGEFMMNEAE 397
>gi|323692775|ref|ZP_08107003.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum
WAL-14673]
gi|323503217|gb|EGB19051.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum
WAL-14673]
Length = 187
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE-----RR 59
WY++Q + E++ + I L R + V+ + +++ E R
Sbjct: 2 WYVIQTVTGKEEELMLFIRNILCRERYESCF---------VIYAQWMKRLGGEWQIQVRP 52
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
FPGYV I +++Y +K PK LGTG + E E + +
Sbjct: 53 LFPGYVFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEEEKFLRMI 103
>gi|307108796|gb|EFN57035.1| hypothetical protein CHLNCDRAFT_51331 [Chlorella variabilis]
Length = 1295
Score = 35.4 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
F+ G++V V+ G F F G V V + R+ E+ IFG+ T VEL+ + V
Sbjct: 759 FQPGQQVAVTQGNFRDFEGTV--VAAQGGRLTAELDIFGKRTRVELSPSDV 807
>gi|323483811|ref|ZP_08089190.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum
WAL-14163]
gi|323402896|gb|EGA95215.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum
WAL-14163]
Length = 187
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE-----RR 59
WY++Q + E++ + I L R + V+ + +++ E R
Sbjct: 2 WYVIQTVTGKEEELMLFIRNILCRERYESCF---------VIYAQWMKRLGGEWQIQVRP 52
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
FPGYV I +++Y +K PK LGTG + E E + +
Sbjct: 53 LFPGYVFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEEEKFLRMI 103
>gi|294637995|ref|ZP_06716260.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685]
gi|291088867|gb|EFE21428.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685]
Length = 163
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ C++ +E L+R + + I + E+VV +G++ + FP Y
Sbjct: 4 WYLL----YCKRGQLERAREHLTRQAIPCVTPMIAL--EKVV---RGKRTQVQEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---QRPVSSV 121
+ I+ T++ T V F+ G+ P+ V I+ +M A Q P+
Sbjct: 55 MFIELDPERIHTTTVQSTRGVSHFIRFGKRPATVPFRVIKQLMTAPMATAAAPQTPMP-- 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEK 150
G+RV + G F+ I + D EK
Sbjct: 113 ----GDRVRILQGAFSGLEAIYRESDGEK 137
>gi|153930622|ref|YP_001393253.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758]
gi|152958166|gb|ABS45629.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758]
Length = 159
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 30 GLDHLVTEITIPSERVVSVRKG----RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
GLD L PS +V VR R VN FP Y+ ++ + TI T V
Sbjct: 20 GLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEP--MFPTYLFVEFDIESIHTTTISSTLGV 77
Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
F+ G P P+ S I +MN+ E + QR
Sbjct: 78 NYFVKFGTEPKPIPLSLIHQLMNRSECSSQR 108
>gi|114319257|ref|YP_740940.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
gi|114225651|gb|ABI55450.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
Length = 177
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E+ A +++G R G +P RVV R R+V FP Y
Sbjct: 15 WYLIYTKPRQEEAARDNLG----RQGF-----HAWLPRVRVVKRRGTRRVPVVEPMFPRY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-------AAVQRP 117
+ ++ + + I T V + G P+ V + + + + +A Q+P
Sbjct: 66 LFVELDSAYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQP 125
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V+ G FA + + + + RV V + + G+ + V L + ++ +
Sbjct: 126 ------RAGDTVRVAHGAFAGYEAVFQ-ARSGRERVLVLLEVAGKQSRVTLPADDIDPV 177
>gi|237714660|ref|ZP_04545141.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406525|ref|ZP_06083074.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647458|ref|ZP_06725042.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294806943|ref|ZP_06765766.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|229445429|gb|EEO51220.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355228|gb|EEZ04319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637200|gb|EFF55634.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294445830|gb|EFG14474.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 188
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 31/169 (18%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+ V + EKK E RL + G+++ V P ++ V R+ E P
Sbjct: 25 RWYVALVRMHHEKKVAE----RLDKMGIENFV-----PVQQEVHQWSDRRKVVESVLLPM 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGF-------LGTGEN-PSPVTDSEIEH---IMNQVEA 112
V + A K+ +V+ F + GE+ P+ + D ++ +++ E
Sbjct: 76 MVFVHA--------DPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEE 127
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
A+ ++S GE+VCV GP G + VD +S++ V + + G
Sbjct: 128 AIC--MNSAPLARGEKVCVIKGPLTGLVGELVTVD-GRSKIAVRLNMLG 173
>gi|303244500|ref|ZP_07330835.1| NusG antitermination factor [Methanothermococcus okinawensis IH1]
gi|302485198|gb|EFL48127.1| NusG antitermination factor [Methanothermococcus okinawensis IH1]
Length = 146
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GY+L++A V ++ T KV G + P ++ E+EH+++ + + S
Sbjct: 39 LKGYILVEAPNKGAVEDLVRKTFKVKGIV-----PGEISIDELEHLLSPT-----KIIES 88
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + G+ V + GPF IV VD+ K + +E++ P+ + QV+
Sbjct: 89 I--DKGDVVELVAGPFKGEKAIVTRVDKHKEEITLELMEAAVPIPITVGIEQVK 140
>gi|167754736|ref|ZP_02426863.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402]
gi|167705568|gb|EDS20147.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402]
Length = 169
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 21/172 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V+SN K + ++ R + IP V + +K + + F Y
Sbjct: 7 WYVLYVFSNKTNKILSNLNQRKELTAF--------IPKTEVFHRQAKKK--TTKDMFDNY 56
Query: 65 VLIKAVMTDKVYH----TIKDTPKVIGFLGTGENP--SPVTDSEIEHIMNQVEAAVQRPV 118
+ +K+ + ++ ++KD K G + EN S + + EIE N ++ V
Sbjct: 57 IFVKSDLKQNDFNDLLLSMKD--KNDGLIKQLENAEVSALREKEIEFFNNVLDKDNVARV 114
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR--VTPVEL 168
S + E G + +++GP + + V + +++ F R + VEL
Sbjct: 115 SVGYQEEG-KTIITEGPLLHYQDYIVRVMKHHCTAQLDLPFFDRKIILGVEL 165
>gi|307943758|ref|ZP_07659102.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
gi|307773388|gb|EFO32605.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
Length = 200
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 12/158 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + + E+ A+ + R L+ + + R R + +++ + GY
Sbjct: 31 WLVACCHPTKEQHALRQLTER-------GLLAYLPMRPGRRRQPRCKKMIDNSQPLIRGY 83
Query: 65 VLIKA-VMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ--RPVS 119
+ + T V I V G L + P V + + I++ E +P
Sbjct: 84 LFVCTDFSTGSVVDEILSCGCVSGLLSFRADKYPHRVPSARVVDIIDHCEQLQTGGKPQK 143
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
++ F++G +V + GP F+ +V D K+RV EV
Sbjct: 144 AIGFDIGSKVRLIAGPMEGFSAVVTGYDLAKARVQAEV 181
>gi|302813571|ref|XP_002988471.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii]
gi|300143873|gb|EFJ10561.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii]
Length = 311
Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL--VTEITIPSERVVSVRKGRKVNSER 58
M +WY ++V++N E +++E++ L D V IP+E VV +G+ + +
Sbjct: 85 MGMQWYTLRVFTNNEAESMEALRSTLEAEFPDAKFEVWSPIIPTESVV---RGKSRFAMK 141
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT 91
G++ ++ V+ VY + V F+G
Sbjct: 142 AMLRGHIFLRCVLEAPVYRHAMNERSVFCFVGA 174
>gi|240102542|ref|YP_002958851.1| transcription antitermination protein NusG [Thermococcus
gammatolerans EJ3]
gi|239910096|gb|ACS32987.1| Ribosomal protein L26E (rpl26E) [Thermococcus gammatolerans EJ3]
Length = 152
Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A V IK G L P V EIEH + + +P S
Sbjct: 45 GYIFVEAPSKSAVDEAIKGIRHARGTL-----PGEVKFEEIEHFLEE------KPAVS-G 92
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FE G+ V + GPF V VDE K + VE++ G + P+
Sbjct: 93 FEPGDIVELISGPFKGEKAKVVRVDESKDEIVVELI--GAIVPI 134
>gi|283797664|ref|ZP_06346817.1| putative transcription termination factor NusG [Clostridium sp.
M62/1]
gi|291074670|gb|EFE12034.1| putative transcription termination factor NusG [Clostridium sp.
M62/1]
Length = 176
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 12/164 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFPG 63
WY++Q + E E + G + R + H + +R + R GR FP
Sbjct: 2 WYVIQTTTGKE----EELAG-IVRRNVSHALYGSCFSMKRELLKRLGGRWTAVTETMFPS 56
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----NQVEAAVQRPV 118
YV ++ +++++ +K P+ LG E + E E+ + N+ E V
Sbjct: 57 YVFLETEQPERLFYELKRLPEYTRLLGDNEGCFIPIEKEEENFLNILRRNEKETCVAGLT 116
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ E G + +DGP F + ++ K VE+ + G+
Sbjct: 117 TLDLDEDGG-IRKADGPLQFFLDKIVKLNLRKRFAVVELKVAGK 159
>gi|255081736|ref|XP_002508090.1| predicted protein [Micromonas sp. RCC299]
gi|226523366|gb|ACO69348.1| predicted protein [Micromonas sp. RCC299]
Length = 591
Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 87 GFLGTGENPSPVTDSEIEHIMNQV-----EAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141
G + T ++ P DS E I+ + +AA++ ++ + V GPF F G
Sbjct: 495 GDVQTHKSADPTADSNAEPIVGEEAMALRDAAIRPGAATATGAGAASIEVVAGPFKGFKG 554
Query: 142 IVKNVDEEK--SRVHVEVVIFGRVTPVELAYNQVEKI 176
V + D+ + V ++VIFGR T V L + E +
Sbjct: 555 YVTSADKPRGDGAVDAKLVIFGRETDVTLEAGEFETL 591
>gi|5739314|gb|AAD50428.1|AF161701_1 HnusG [Streptococcus pneumoniae]
Length = 74
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 24 EIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 74
>gi|99080639|ref|YP_612793.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
gi|99036919|gb|ABF63531.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
Length = 193
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 32/45 (71%)
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+G A+F ++K+ ++ +++ VE+ IFGRVTP+++ ++V+ +
Sbjct: 149 EGFSATFAKVIKHAHDDYAKLRVELEIFGRVTPLDVDPDRVKGVA 193
>gi|254171978|ref|ZP_04878654.1| ribosomal protein L24 [Thermococcus sp. AM4]
gi|214033874|gb|EEB74700.1| ribosomal protein L24 [Thermococcus sp. AM4]
Length = 152
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A V IK G L P V EIEH + + +P S
Sbjct: 45 GYIFVEAPSKSAVDEAIKGIRHARGTL-----PGEVRFEEIEHFLEE------KPAVS-G 92
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FE G+ V + GPF V VDE K + VE++ G + P+
Sbjct: 93 FEPGDIVELISGPFKGEKAKVVRVDESKDEIVVELI--GAIVPI 134
>gi|149910552|ref|ZP_01899191.1| putative transcriptional activator RfaH [Moritella sp. PE36]
gi|149806395|gb|EDM66368.1| putative transcriptional activator RfaH [Moritella sp. PE36]
Length = 174
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 10/155 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A+ + L G++ +T+ + + + + E FP Y
Sbjct: 8 WYLLYCKGKEEPRALIN----LKNQGIESFYPTMTVEKKL-----RNKLICQEIAIFPNY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + +++I+ T VI F+ G N + V + + + + F
Sbjct: 59 LFVAIDKNTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTVFS 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVV 158
GE V + DG F I + D E+S + + ++
Sbjct: 119 EGETVIIQDGAFKGIEAIYQCKDGLERSMLLINLI 153
>gi|184199988|ref|YP_001854195.1| hypothetical protein KRH_03420 [Kocuria rhizophila DC2201]
gi|183580218|dbj|BAG28689.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 691
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSS---VFFEVGERVCVSDGPFASFNGIVK 144
G GE P TD+E+ + AA+ P ++ + G R+ ++ P G+++
Sbjct: 315 GPGEGDPPATDAELLDSLEPAVAAMMLANPTTAGIYALYRTGRRLSAAERPGPGLTGVLR 374
Query: 145 NVDEEKSRVHVEVVIFGRVTPVELA 169
+++E++ +F VTP A
Sbjct: 375 GLEKERALYPARREVFTGVTPATAA 399
>gi|212223324|ref|YP_002306560.1| transcription antitermination protein NusG [Thermococcus onnurineus
NA1]
gi|212008281|gb|ACJ15663.1| transcription antitermination protein [Thermococcus onnurineus NA1]
Length = 152
Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A V IK G L P V EIEH + + +P S
Sbjct: 45 GYIFVEAPSKSAVDEAIKGIRHAKGTL-----PGEVRFEEIEHFLEE------KPAVS-G 92
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FE G+ V + GPF V VDE K + VE++ G + P+
Sbjct: 93 FEPGDIVELIAGPFKGEKAKVVRVDEAKDEIVVELI--GSIVPI 134
>gi|153009640|ref|YP_001370855.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
gi|151561528|gb|ABS15026.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
Length = 217
Score = 33.9 bits (76), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFPG 63
W ++QV S E E++G + ++ LV P R R+GR++ ++++ G
Sbjct: 51 WLVLQVMSGRELSVREALG----KENIEVLVPMKMGPKIR----RQGREIPAKKQPVMNG 102
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA------VQRP 117
YVL + +++++ + V+ LG E P V+ ++ + E R
Sbjct: 103 YVLARCMISNECLAGLLSFENVVSILGGYETPFLVSAEKVFVFRAKAEDGQYDYEHFHRK 162
Query: 118 VSSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVVIFGR 162
V + V+DGPFA +V + V +EV I GR
Sbjct: 163 FIGVKWAR-----VADGPFAGCRAELVSGGTKGNGLVVIEVSIMGR 203
Searching..................................................done
Results from round 2
>gi|317123109|ref|YP_004103112.1| transcription antitermination protein nusG [Thermaerobacter
marianensis DSM 12885]
gi|315593089|gb|ADU52385.1| transcription antitermination protein nusG [Thermaerobacter
marianensis DSM 12885]
Length = 234
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K +I R+ G+ + E+ +P+E + V+ G++ +R+ FP
Sbjct: 63 RQWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFP 122
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ +MTD ++ +++TP V GF+G G P+P+ SE+E I Q+ + P +
Sbjct: 123 GYVLVEMIMTDDSWYVVRNTPGVTGFVGAGNKPTPLLPSEVEQIRRQM--GMDEPRPLIR 180
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V+DGPF F G V+++D +K ++ V V +FGR TPVEL + QVEKI
Sbjct: 181 FEVGESVKVADGPFEGFIGQVESIDHQKGKLRVLVSMFGRETPVELDFTQVEKI 234
>gi|162146512|ref|YP_001600971.1| transcription antitermination protein NusG [Gluconacetobacter
diazotrophicus PAl 5]
gi|209543489|ref|YP_002275718.1| transcription antitermination protein NusG [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785087|emb|CAP54631.1| transcription antitermination protein NusG [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531166|gb|ACI51103.1| NusG antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
Length = 176
Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats.
Identities = 92/176 (52%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I + ++ GL ++ +PSE VV VR+G+KV++ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIAQHIKEQAAQKGLSDHFGDVLVPSEEVVEVRRGQKVSAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP++ +E + IM Q + V+RP S
Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPISGAEADRIMKQAQEGVERPRPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPF SFNG ++ VDE+K+R+ V V IFGR TPV+L Y+QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFTSFNGTIEEVDEDKARLKVSVSIFGRSTPVDLEYSQVEKL 176
>gi|313903164|ref|ZP_07836558.1| transcription antitermination protein nusG [Thermaerobacter
subterraneus DSM 13965]
gi|313466666|gb|EFR62186.1| transcription antitermination protein nusG [Thermaerobacter
subterraneus DSM 13965]
Length = 236
Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K +I R+ G+ + E+ +P+E + V+ G++ +R+ FP
Sbjct: 65 RQWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFP 124
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+ +MTD ++ +++TP V GF+G G P+P+ SE+E I Q+ V P +
Sbjct: 125 GYVLVDMIMTDDSWYVVRNTPGVTGFVGAGSKPTPLLPSEVEQIRRQM--GVDEPRPLIR 182
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V+DGPF F G V+ +D +K ++ V V +FGR TPVEL + QVEK+
Sbjct: 183 FEVGESVKVADGPFEGFIGQVETIDHQKGKLRVLVSMFGRETPVELDFTQVEKL 236
>gi|329114824|ref|ZP_08243581.1| Transcription antitermination protein NusG [Acetobacter pomorum
DM001]
gi|326695955|gb|EGE47639.1| Transcription antitermination protein NusG [Acetobacter pomorum
DM001]
Length = 188
Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats.
Identities = 99/176 (56%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I + GL + EI +PSE V+ VR+G+KVN+ER+F
Sbjct: 13 MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 72
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ +H +KDTPKV GFLGT P+P++ +E E I+ Q E VQ P S+
Sbjct: 73 FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 132
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 133 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 188
>gi|58039757|ref|YP_191721.1| transcription antitermination protein NusG [Gluconobacter oxydans
621H]
gi|58002171|gb|AAW61065.1| Transcription antitermination protein NusG [Gluconobacter oxydans
621H]
Length = 176
Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats.
Identities = 92/176 (52%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK I + ++ GL +I +PSE V +R+GRKVN+ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIASHIQEQAAQKGLSDHFEQILVPSEDVTEMRRGRKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H +KDTPKV GFLGT P+P+T +E + IM Q + V+RP SS
Sbjct: 61 FPGYVLVKMELTDEAWHLVKDTPKVTGFLGTRNRPTPITAAEADRIMKQAQEGVERPRSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPF SF G++++VD+E+ R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 LSFEIGEQVRVADGPFTSFTGMIEDVDDERQRLKVSVSIFGRSTPVDLDFTQVEKL 176
>gi|116625380|ref|YP_827536.1| transcription antitermination protein nusG [Candidatus Solibacter
usitatus Ellin6076]
gi|116228542|gb|ABJ87251.1| transcription antitermination protein nusG [Candidatus Solibacter
usitatus Ellin6076]
Length = 239
Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 110/175 (62%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI+ YS E K ES+ R G + +I IP+E VV +R G+KV S+R +
Sbjct: 65 AKKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKRLVY 124
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++ M D ++H +K+TP+V GF+G G +P P++ E+ I+ + ++ +RP +
Sbjct: 125 PGYVLVEMEMNDALWHEVKNTPRVTGFVGGGNSPVPLSADEVNSILYRQASSAERPRPKM 184
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE + V + DGPFA+F+G V V+ E+ + V V IFGR TPVEL + QVEK+
Sbjct: 185 TFEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239
>gi|220935504|ref|YP_002514403.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
gi|219996814|gb|ACL73416.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
Length = 177
Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E S+ R+ R G+ EI +P+E VV +R G+K SER+F
Sbjct: 1 MALRWYVVHAYSGFENHVKRSLEERIERYGMQDKFGEILVPTEEVVEMRDGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +KD PKV+GF+G + + P+P++D E ++I+ +++ ++P
Sbjct: 61 FPGYVLVQMELDDDTWHLVKDVPKVLGFIGASADKPTPISDKEAQNILQRMQEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V DGPF FNG+V+ V+ +K+R+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEAGEVVRVIDGPFNDFNGVVEEVNYDKNRLLVAVQIFGRSTPVELEFHQVEK 176
>gi|297182720|gb|ADI18876.1| transcription antiterminator [uncultured Pseudomonadales bacterium
HF0010_05E14]
Length = 177
Score = 250 bits (638), Expect = 9e-65, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS E K +I R+ L EI +P+E VV ++ G+K SER+F
Sbjct: 1 MSKQWYVVHAYSGYENKVATAIEERIKLHNLQDKFGEIMVPTEEVVEMKGGQKRTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ + D+ +H +KDTP+V+GF+G E PSP+++ E + I+ +V+ + + P
Sbjct: 61 FPGYVLVNMELDDESWHLVKDTPRVMGFIGGKREKPSPISEKEADIILRRVQDSGETPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF FNG V+ V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KTMFEAGEMVRVTDGPFNDFNGTVEEVNYEKSKLRVAVSIFGRSTPVELDFTQVEK 176
>gi|147676640|ref|YP_001210855.1| transcription antiterminator [Pelotomaculum thermopropionicum SI]
gi|146272737|dbj|BAF58486.1| transcription antiterminator [Pelotomaculum thermopropionicum SI]
Length = 175
Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+R+
Sbjct: 1 MEKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ D+E I+ Q+ V+ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQM--GVEEPRTR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F VGE + V GPF +F G ++ ++ EKS+V V + +FGR TPVEL + QVEKI+
Sbjct: 119 VDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKII 175
>gi|150396194|ref|YP_001326661.1| transcription antitermination protein NusG [Sinorhizobium medicae
WSM419]
gi|150027709|gb|ABR59826.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
Length = 176
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 106/176 (60%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV +R+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLTHLFEKILVPTEKVVEIRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E + I+ QV+ V+RP S
Sbjct: 61 FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ISFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|15965096|ref|NP_385449.1| transcription antitermination protein NusG [Sinorhizobium meliloti
1021]
gi|307314831|ref|ZP_07594424.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
gi|307322130|ref|ZP_07601504.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
gi|15074276|emb|CAC45922.1| Probable transcription antitermination protein [Sinorhizobium
meliloti 1021]
gi|306892215|gb|EFN23027.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
gi|306898945|gb|EFN29592.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
Length = 176
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 107/176 (60%), Positives = 134/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKAKQKGLTHLFEKILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E + I+ QV+ V+RP S
Sbjct: 61 FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|258541216|ref|YP_003186649.1| transcription antitermination protein NusG [Acetobacter
pasteurianus IFO 3283-01]
gi|256632294|dbj|BAH98269.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-01]
gi|256635351|dbj|BAI01320.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-03]
gi|256638406|dbj|BAI04368.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-07]
gi|256641460|dbj|BAI07415.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-22]
gi|256644515|dbj|BAI10463.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-26]
gi|256647570|dbj|BAI13511.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-32]
gi|256650623|dbj|BAI16557.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256653614|dbj|BAI19541.1| transcription antitermination factor NusG [Acetobacter pasteurianus
IFO 3283-12]
Length = 176
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 99/176 (56%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I + GL + EI +PSE V+ VR+G+KVN+ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ +H +KDTPKV GFLGT P+P++ +E E I+ Q E VQ P S+
Sbjct: 61 FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 176
>gi|254785051|ref|YP_003072479.1| transcription termination/antitermination factor NusG
[Teredinibacter turnerae T7901]
gi|237686030|gb|ACR13294.1| transcription termination/antitermination factor NusG
[Teredinibacter turnerae T7901]
Length = 177
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKKVATALKERIELYGMQDSFGEVLVPTEEVVEMRGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD E E I+ +V+ + +P
Sbjct: 61 FPGYVLVQMELNDDAWHLVKETPRVMGFIGGKADKPAPITDKEAELILQRVDDSADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176
>gi|296117260|ref|ZP_06835852.1| transcription antitermination protein NusG [Gluconacetobacter
hansenii ATCC 23769]
gi|295976213|gb|EFG82999.1| transcription antitermination protein NusG [Gluconacetobacter
hansenii ATCC 23769]
Length = 176
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ VYS EKK + I + ++ GL EI +PSE V VR+G+KVNSER+F
Sbjct: 1 MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEVRRGQKVNSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP+ +E E IM Q + V+R S
Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTKPSPIPKAEAERIMKQAQEGVERVRPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG ++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VTFEVGEQIRVADGPFTSFNGTIEEVDEEKGRLTVSVSIFGRSTPVDLEYNQVEKV 176
>gi|149925890|ref|ZP_01914153.1| transcription antitermination protein NusG [Limnobacter sp. MED105]
gi|149825178|gb|EDM84389.1| transcription antitermination protein NusG [Limnobacter sp. MED105]
Length = 177
Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK ++ R+ RS L +I +PSE VV ++ G+K SERRF
Sbjct: 1 MSKRWYVVHAYSGLEKSVQRALQERIDRSEFSDLFGQILVPSEEVVEIKGGQKSISERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD +H +K+TPKV GF+ GTG P+P++ E++ IM Q++ ++P
Sbjct: 61 FPGYVLVEMEMTDDSWHLVKNTPKVTGFVGGTGNRPTPISQKEVDKIMQQMQEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EVGE V V +GPFA FNG V+ ++ EKS++ V V IFGR TPVEL ++QVEK+
Sbjct: 121 KVLYEVGEMVRVKEGPFADFNGNVEEINYEKSKLRVSVTIFGRATPVELDFHQVEKV 177
>gi|209548922|ref|YP_002280839.1| transcription antitermination protein NusG [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209534678|gb|ACI54613.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 176
Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDHEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|90020566|ref|YP_526393.1| transcription antitermination protein nusG [Saccharophagus
degradans 2-40]
gi|89950166|gb|ABD80181.1| transcription antitermination protein nusG [Saccharophagus
degradans 2-40]
Length = 177
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK +I R+ + + ++ +P+E V+ +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKKVAAAIKERIELNNMQDSFGDVLVPTEEVIEIRAGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD +H +K+TP+V+GF+G + P+P+T+ E + I+ +V+ + +P
Sbjct: 61 FPGYVLVQMELTDDAWHLVKETPRVMGFIGGKADRPAPITEKEAQLILQRVDDSADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPF FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK+
Sbjct: 121 KTLFEPGEMVRVTDGPFNDFNGVVEEVNYEKSKLQVAVLIFGRSTPVELEFGQVEKV 177
>gi|192359543|ref|YP_001981196.1| transcription termination/antitermination factor NusG [Cellvibrio
japonicus Ueda107]
gi|190685708|gb|ACE83386.1| transcription termination/antitermination factor NusG [Cellvibrio
japonicus Ueda107]
Length = 177
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK S+ R++ G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKKVAASLRERVALHGMEDSFGEILVPTEEVVEMRGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +KDTP+V+GF+G + P+P+T+ E E I+ +V+ ++++P
Sbjct: 61 FPGYVLVQMELNDDTWHLVKDTPRVMGFIGGKADQPAPITEKEAEAILRRVDDSMEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ +K+R+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKNRLRVAVLIFGRSTPVELEFGQVEK 176
>gi|224370702|ref|YP_002604866.1| NusG [Desulfobacterium autotrophicum HRM2]
gi|223693419|gb|ACN16702.1| NusG [Desulfobacterium autotrophicum HRM2]
Length = 176
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 111/176 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V VYS E K ++ +++ SG EI +P+E VV + G+K S R+F
Sbjct: 1 MSLKWYVVHVYSGFEHKVKLALEDKVANSGCADSFDEILVPTEHVVELVNGKKRESSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D+ +H + TPKV GFLG P+P++D+E I+ ++E +P
Sbjct: 61 YPGYILVRMSLNDETWHIVNSTPKVTGFLGGKNKPAPISDAEAAAIVERMEQGKNKPQPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+FE G+ V V+DGPF +FNG V+ + +K +V V V IFGR TPVEL + QV KI
Sbjct: 121 YYFEPGDDVRVTDGPFTNFNGTVEESNPDKGKVRVLVSIFGRATPVELDFVQVTKI 176
>gi|190891342|ref|YP_001977884.1| transcription antitermination protein [Rhizobium etli CIAT 652]
gi|190696621|gb|ACE90706.1| transcription antitermination protein [Rhizobium etli CIAT 652]
gi|327194521|gb|EGE61379.1| transcription antitermination protein [Rhizobium etli CNPAF512]
Length = 176
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 106/176 (60%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|154247287|ref|YP_001418245.1| NusG antitermination factor [Xanthobacter autotrophicus Py2]
gi|154161372|gb|ABS68588.1| NusG antitermination factor [Xanthobacter autotrophicus Py2]
Length = 176
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 100/176 (56%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK +SI + + GL L +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVADSIREQADQRGLTDLFEQILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I+ QV+ ++RP S
Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISESEAMRILQQVQEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 ITFEVGETVKVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEFAQVEKV 176
>gi|289209341|ref|YP_003461407.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix]
gi|288944972|gb|ADC72671.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix]
Length = 177
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E + S+ R+ R G+ +I +P+E VV ++ G+K SER+F
Sbjct: 1 MALRWYVVQAFSGFEAQVKRSLEERIERFGMQDHFGQILVPTEEVVEMKDGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ ++P
Sbjct: 61 FPGYVLVQMDLNDEAWHLVKAVPRVLGFIGGTADRPAPISDKEADAILQRMQEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEMVRVTDGPFNDFNGVVEEVNYEKSRLLVAVQIFGRSTPVELEFHQVEK 176
>gi|319944817|ref|ZP_08019080.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lautropia mirabilis ATCC 51599]
gi|319741931|gb|EFV94355.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lautropia mirabilis ATCC 51599]
Length = 177
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 83/177 (46%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK +I R+ R+G+ L +I +P+E VV ++ G++ +ERRF
Sbjct: 1 MSKRWYVVHAYSGMEKSVGRAIRERVERAGMQDLFGQILVPTEEVVEMKNGQRSITERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D +H +K+T KV GF+ G+G P+ ++ +E++ IMNQ+ V++P
Sbjct: 61 FPGYVLVEMEMNDDTWHLVKNTNKVTGFVGGSGNRPAAISQAEVDKIMNQMAEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V V +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 KTLFEIGEMVRVKEGPFADFNGNVEEVNYEKSRLTVSVTIFGRATPVELEFGQVEKL 177
>gi|88704396|ref|ZP_01102110.1| Bacterial transcription antitermination protein NusG
[Congregibacter litoralis KT71]
gi|88701447|gb|EAQ98552.1| Bacterial transcription antitermination protein NusG
[Congregibacter litoralis KT71]
Length = 177
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ ++ +P+E VV +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKKVATALQERIELHGMGDRFGDVLVPTEEVVEMRAGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I++++E + P
Sbjct: 61 FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|330891943|gb|EGH24604.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. mori str. 301020]
Length = 177
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V +DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRATDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|222085663|ref|YP_002544193.1| transcription termination/antitermination factor NusG
[Agrobacterium radiobacter K84]
gi|221723111|gb|ACM26267.1| transcription termination/antitermination factor NusG
[Agrobacterium radiobacter K84]
Length = 176
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 107/176 (60%), Positives = 136/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKAKQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP +S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176
>gi|296131823|ref|YP_003639070.1| NusG antitermination factor [Thermincola sp. JR]
gi|296030401|gb|ADG81169.1| NusG antitermination factor [Thermincola potens JR]
Length = 174
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++ YS E K ++ R+ + + I +P E V ++ G+K ++R+
Sbjct: 1 MEKQWYVIHTYSGYENKVKANLEKRIESMNMGDKIFRILVPMEDEVEIKDGKKKVAKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++T V GF+G+G P P+ ++E+ HI+ Q+ V+ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTSGVTGFVGSGSKPIPLHEAEVRHILRQM--GVEEPRAK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+G+ V V+ GPF +F G ++ + +K ++ V V +FGR TPVEL Y QVE++
Sbjct: 119 IDFELGQNVRVTSGPFENFIGSIEEIYPDKGKIKVLVSMFGRETPVELEYGQVERL 174
>gi|256821650|ref|YP_003145613.1| NusG antitermination factor [Kangiella koreensis DSM 16069]
gi|256795189|gb|ACV25845.1| NusG antitermination factor [Kangiella koreensis DSM 16069]
Length = 177
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E K + R+ +GL+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MALRWYVVQAFSGYENKVKTMLEERIQLAGLEDKFGEVLVPTEEVVEMRAGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M ++ + +++TP+V+GF+ GT + P+P+++ E I+N++E + +P
Sbjct: 61 FPGYVLVQMDMDEESWQVVRNTPRVMGFIGGTSDRPAPISEKEANAILNRIEDSGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V+DGPFA FNG+V++V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEPGEMVRVTDGPFADFNGVVESVNYEKSRLQVSVSIFGRSTPVELEFSQVEK 176
>gi|116251526|ref|YP_767364.1| transcription antitermination protein NusG [Rhizobium leguminosarum
bv. viciae 3841]
gi|218677875|ref|ZP_03525772.1| transcription antitermination protein NusG [Rhizobium etli CIAT
894]
gi|241204152|ref|YP_002975248.1| transcription antitermination protein NusG [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115256174|emb|CAK07255.1| putative transcription antitermination protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|240858042|gb|ACS55709.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 176
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|304391359|ref|ZP_07373301.1| transcription termination/antitermination factor NusG [Ahrensia sp.
R2A130]
gi|303295588|gb|EFL89946.1| transcription termination/antitermination factor NusG [Ahrensia sp.
R2A130]
Length = 176
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 101/176 (57%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYI+ YSN EKK V+SI + + GL+ L +I +P+E+VV VRKG+KV++ER+F
Sbjct: 1 MAMRWYIIHAYSNFEKKVVDSILEQARQKGLEDLFEQILVPTEKVVEVRKGKKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL + MTD+ +H IK+TPKV GFLG+ P P+ D E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLARMNMTDQAFHLIKNTPKVTGFLGSDNKPMPIPDREADRILNQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASF+G V+ VDEE++R+ VEV IFGR TPV+L Y QVEK+
Sbjct: 121 VTFEIGESVRVSDGPFASFSGTVEEVDEERARLKVEVSIFGRATPVDLEYAQVEKV 176
>gi|158422506|ref|YP_001523798.1| transcription antitermination protein [Azorhizobium caulinodans ORS
571]
gi|158329395|dbj|BAF86880.1| transcription antitermination protein [Azorhizobium caulinodans ORS
571]
Length = 180
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK +SI + + L L +I +P+E+VV VR+GRKV++ER+F
Sbjct: 5 MAKRWYIVHAYSNFEKKVADSIREQAEQRNLTDLFEQILVPTEKVVEVRRGRKVDTERKF 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I+ QV+ ++RP S
Sbjct: 65 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISENEAMRILQQVQEGIERPKPS 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +EVGE V VSDGPFA+FNGIV+ VDE +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 125 ISYEVGETVKVSDGPFATFNGIVEEVDESRSRLKVAVSIFGRATPVELEFGQVEKV 180
>gi|86357292|ref|YP_469184.1| transcription antitermination protein NusG [Rhizobium etli CFN 42]
gi|86281394|gb|ABC90457.1| transcription antitermination protein [Rhizobium etli CFN 42]
Length = 176
Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats.
Identities = 107/176 (60%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VTFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176
>gi|229592915|ref|YP_002875034.1| transcription antitermination protein NusG [Pseudomonas fluorescens
SBW25]
gi|312963379|ref|ZP_07777862.1| transcription termination/antitermination factor [Pseudomonas
fluorescens WH6]
gi|229364781|emb|CAY52786.1| transcription antitermination protein [Pseudomonas fluorescens
SBW25]
gi|311282459|gb|EFQ61057.1| transcription termination/antitermination factor [Pseudomonas
fluorescens WH6]
Length = 177
Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|254483533|ref|ZP_05096759.1| transcription termination/antitermination factor NusG [marine gamma
proteobacterium HTCC2148]
gi|214036190|gb|EEB76871.1| transcription termination/antitermination factor NusG [marine gamma
proteobacterium HTCC2148]
Length = 177
Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKKVATALQERIELHGMQDRFGEVLVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+ GT + P+P+T++E I+ +VE V+ P
Sbjct: 61 FPGYVLVQMELGDDSWHLVKETPRVMGFIGGTADTPAPITEAEASAILQRVEQGVEAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|325293351|ref|YP_004279215.1| Transcription antitermination protein nusG [Agrobacterium sp.
H13-3]
gi|325061204|gb|ADY64895.1| Transcription antitermination protein nusG [Agrobacterium sp.
H13-3]
Length = 176
Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats.
Identities = 110/176 (62%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GLDHL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLDHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 VSFEVGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176
>gi|115378476|ref|ZP_01465635.1| transcription termination/antitermination factor NusG [Stigmatella
aurantiaca DW4/3-1]
gi|310822265|ref|YP_003954623.1| transcription antitermination protein NusG [Stigmatella aurantiaca
DW4/3-1]
gi|115364538|gb|EAU63614.1| transcription termination/antitermination factor NusG [Stigmatella
aurantiaca DW4/3-1]
gi|309395337|gb|ADO72796.1| Transcription antitermination protein NusG [Stigmatella aurantiaca
DW4/3-1]
Length = 180
Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YSN E +A +S+ ++ GL EI IP E+VV + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSNFENQAKKSLEEKIRLEGLQDQFGEILIPMEQVVEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+ ++ + D+ +H +K+TPK+ GF G +N P+P++D+E+ + +Q+ +P
Sbjct: 61 FPGYIFVQMDLNDRTWHLVKNTPKITGFPGAAQNQQPTPISDAEVARLTSQISEGTLKPK 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK
Sbjct: 121 PKVQFEDGDTVRVIDGPFANFNGTVEEVNPEKGRVKVLVSIFGRATPVELDFMQVEK 177
>gi|328543344|ref|YP_004303453.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1]
gi|326413089|gb|ADZ70152.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1]
Length = 176
Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats.
Identities = 101/176 (57%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK +SI + ++ GL L EI +P E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVADSIREKAAQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ +H IK+TPKV GFLGT + P P+++SE + I++QV+ V+RP S
Sbjct: 61 FPGYVLVKMEMTDEAFHLIKNTPKVTGFLGTDQKPMPISESEAQRILHQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+KI
Sbjct: 121 ISFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKI 176
>gi|154253165|ref|YP_001413989.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1]
gi|154157115|gb|ABS64332.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1]
Length = 176
Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats.
Identities = 99/176 (56%), Positives = 130/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ES+ + + GL EI +P+E VV VR+GRK+N+ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESLREQAEQQGLSEQFEEILVPTEEVVEVRRGRKINAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ YH +K+TPKV GFLG P P++ +E++ I++QV+ V+RP S
Sbjct: 61 FPGYVLVKVDLTDEAYHLVKNTPKVTGFLGADNKPQPISQAEVDRILHQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVADGPFASFNGFVEEVDEEKARLKVAVSIFGRATPVELEYAQVEKL 176
>gi|227821742|ref|YP_002825712.1| transcription antitermination protein NusG [Sinorhizobium fredii
NGR234]
gi|227340741|gb|ACP24959.1| possible transcription antitermination protein NusG [Sinorhizobium
fredii NGR234]
Length = 176
Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats.
Identities = 109/176 (61%), Positives = 135/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E E I+ QV+ V+RP S
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEAERILGQVQDGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|15889255|ref|NP_354936.1| transcription antitermination protein NusG [Agrobacterium
tumefaciens str. C58]
gi|15157085|gb|AAK87721.1| transcription antitermination protein NusG [Agrobacterium
tumefaciens str. C58]
Length = 176
Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats.
Identities = 109/176 (61%), Positives = 137/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS
Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDSKPVPIPDYEADRILGQVQEGVERPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL YNQVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYNQVEKV 176
>gi|288957408|ref|YP_003447749.1| transcriptional antiterminator [Azospirillum sp. B510]
gi|288909716|dbj|BAI71205.1| transcriptional antiterminator [Azospirillum sp. B510]
Length = 176
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK ++I + ++ GL+ EI +P+E VV VR+G K+N+ER+F
Sbjct: 1 MAARWYVVHVYSGFEKKVSQAIREKAAQKGLEDKFEEILVPTEEVVEVRRGSKINTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ + +K+TPKV FLG G P P++ E E I++QV+ +RP S
Sbjct: 61 FPGYVLVKMDLTDESWSLVKNTPKVTDFLGGGGKPQPISQREAERIIHQVQEGFERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V VSDGPF SFNG+V+ VDEEKSR+ V V IFGR TPVEL Y QVEKI
Sbjct: 121 ITFEVGEQVRVSDGPFTSFNGVVEEVDEEKSRLKVAVSIFGRSTPVELEYTQVEKI 176
>gi|302189265|ref|ZP_07265938.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae 642]
Length = 177
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E + I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEADAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|83594032|ref|YP_427784.1| transcription antitermination protein NusG [Rhodospirillum rubrum
ATCC 11170]
gi|83576946|gb|ABC23497.1| transcription antitermination protein nusG [Rhodospirillum rubrum
ATCC 11170]
Length = 176
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 93/176 (52%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY++ VYS E K +SI + + G+D + E+ +P+E +V VR+G KVN+ER+F
Sbjct: 1 MTARWYVIHVYSGFENKVAQSIREQAIQKGMDSRIEEVLVPTEEIVEVRRGAKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K ++D+ +H +K+T KV GFLG PSP++D E E I++QV+ ++RP S
Sbjct: 61 FPGYVLVKMDLSDETWHLVKNTAKVTGFLGGRGRPSPISDREAERILHQVQEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VGE+V V DGPF SFNG+V++VDEEK+R+ V V IFGR TPVEL Y+QVEK+
Sbjct: 121 ITFDVGEQVRVCDGPFTSFNGMVEDVDEEKARLKVSVSIFGRSTPVELEYSQVEKV 176
>gi|325982737|ref|YP_004295139.1| NusG antitermination factor [Nitrosomonas sp. AL212]
gi|325532256|gb|ADZ26977.1| NusG antitermination factor [Nitrosomonas sp. AL212]
Length = 177
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS EK ++ R+ R+G+ +I +P E V+ ++ G+K SER+F
Sbjct: 1 MSMKWYVVHAYSGYEKSVQRALRDRIDRAGMQDKFGQILVPVEEVIEMKSGQKNISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D +H +K+ KV GF+G P+P++ E+++I++Q++ V++P
Sbjct: 61 FPGYVLVEMEMSDDTWHLVKNIDKVTGFVGGSAMKPTPISQKEVDNILHQIQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE + V DGPF F+G V++V+ +KS++ V V IFGR TPVEL +NQVEK
Sbjct: 121 KILFEIGEAIRVKDGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFNQVEK 176
>gi|89893200|ref|YP_516687.1| hypothetical protein DSY0454 [Desulfitobacterium hafniense Y51]
gi|219666473|ref|YP_002456908.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2]
gi|89332648|dbj|BAE82243.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536733|gb|ACL18472.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2]
Length = 175
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT WY++ YS E K ++ R+ ++ + + +P E + ++ G+K ++R+
Sbjct: 1 MTKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEIKNGKKKIAKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ MTD ++ +++TP V GF+GTG P P+ D E++ I+ Q+ V+ +
Sbjct: 61 FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGTGAKPIPLLDHEVQAILKQM--GVEEVRTR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + VG+ V V GPF F V+ + E+K ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 VDYTVGQNVRVISGPFKDFIASVREILEDKGKLRVSVSMFGRETPVELDFAQVEKV 174
>gi|70732893|ref|YP_262662.1| transcription antitermination protein NusG [Pseudomonas fluorescens
Pf-5]
gi|71734301|ref|YP_276718.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|257483173|ref|ZP_05637214.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289623861|ref|ZP_06456815.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289648954|ref|ZP_06480297.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298489108|ref|ZP_07007130.1| Transcription antitermination protein NusG [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|68347192|gb|AAY94798.1| transcription termination/antitermination factor NusG [Pseudomonas
fluorescens Pf-5]
gi|71554854|gb|AAZ34065.1| transcription termination/antitermination factor NusG [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298156420|gb|EFH97518.1| Transcription antitermination protein NusG [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|320322334|gb|EFW78428.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. glycinea str. B076]
gi|320331992|gb|EFW87928.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330869443|gb|EGH04152.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330879351|gb|EGH13500.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330988294|gb|EGH86397.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331012400|gb|EGH92456.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 177
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|298291420|ref|YP_003693359.1| NusG antitermination factor [Starkeya novella DSM 506]
gi|296927931|gb|ADH88740.1| NusG antitermination factor [Starkeya novella DSM 506]
Length = 176
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 97/175 (55%), Positives = 128/175 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK +SI + ++ GL L ++ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVADSIKEQAAQRGLTDLFEQVLVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+ + E I+ QV+ ++RP S
Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPIAEKEAMRILQQVQEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V VSDGPFASFNGIV+ VD+ +SR+ V V IFGR TPVEL + QVEK
Sbjct: 121 ITFEVGETVKVSDGPFASFNGIVEEVDDARSRLKVAVSIFGRATPVELEFAQVEK 175
>gi|291613224|ref|YP_003523381.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1]
gi|291583336|gb|ADE10994.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1]
Length = 177
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK ++ R++R G++ L +I +P E VV ++ G+K SER+F
Sbjct: 1 MAKRWYVVHTYSQFEKSVQRALLERIAREGMEDLFGQILVPVEEVVELKSGQKNISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K+TPKV GFLG P+P++ E+++IM Q++A V++P
Sbjct: 61 FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMKPTPISQKEVDNIMQQMQAGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPF F+G+V++V+ +KS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEAVRVKEGPFTDFHGMVEDVNYDKSKLRVAVTIFGRSTPVELNFGQVEK 176
>gi|163759401|ref|ZP_02166487.1| transcription antitermination protein NusG [Hoeflea phototrophica
DFL-43]
gi|162283805|gb|EDQ34090.1| transcription antitermination protein NusG [Hoeflea phototrophica
DFL-43]
Length = 176
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 134/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK +SI + + GL HL +I +P E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVADSIEEQARQKGLSHLFEKILVPVEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++A +TD+ +H IK+TPKV GFLG+ P P+ DSE E I+ QV+ V+RP S
Sbjct: 61 FPGYVMVRADLTDEAFHLIKNTPKVTGFLGSDSKPVPIPDSEAERILTQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 IAFEIGEQVRVSDGPFASFNGTVQEVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176
>gi|114328705|ref|YP_745862.1| transcription antitermination protein NusG [Granulibacter
bethesdensis CGDNIH1]
gi|114316879|gb|ABI62939.1| transcription antitermination protein nusG [Granulibacter
bethesdensis CGDNIH1]
Length = 176
Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats.
Identities = 95/176 (53%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK + I ++GL EI +PSE VV +R+G+KVN+ER+F
Sbjct: 1 MAKRWYVVHVYSGFEKKIAQQIRETAVQNGLIDHFDEILVPSEEVVELRRGQKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD +H ++DTP+V GFLG+ PSP++++E + I+ Q + V+RP +
Sbjct: 61 FPGYVLVKMELTDDTWHLVRDTPRVTGFLGSRTRPSPISEAEADRILRQAQEGVERPRPA 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE++ V+DGPF SFNG+V+ VDEEK RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VLFEVGEQIRVADGPFTSFNGVVEEVDEEKGRVKVSVSIFGRSTPVELEYGQVEKV 176
>gi|254516893|ref|ZP_05128951.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR5-3]
gi|219674398|gb|EED30766.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR5-3]
Length = 177
Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EKK ++ R+ G+ ++ +P+E VV +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKKVATALKERIELHGMTDRFGDVLVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I++++E + P
Sbjct: 61 FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGEMVRVVDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|77461312|ref|YP_350819.1| transcription antitermination protein NusG [Pseudomonas fluorescens
Pf0-1]
gi|77385315|gb|ABA76828.1| transcription antitermination protein [Pseudomonas fluorescens
Pf0-1]
Length = 177
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGETVRVNDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|218779773|ref|YP_002431091.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
gi|218761157|gb|ACL03623.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
Length = 176
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 112/176 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V VYS E K ++ R++ S ++ IP+E+VV + KG++ S+R+F
Sbjct: 1 MALKWYVVHVYSGFENKVKTALEERIASSRFSDKFGQVLIPTEQVVELVKGKRKTSQRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D+ +H + DT KV GFLG PSP++D E I++Q+EA +P
Sbjct: 61 YPGYILVQMHLDDETWHLVNDTAKVTGFLGGRNKPSPLSDEEASRIVDQIEAGKLKPQPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPF +FNG V+ V+ EK ++ V V IFGR TPVEL + QV K+
Sbjct: 121 YLFETGDEVRVIDGPFTNFNGSVEAVNPEKGKIKVMVSIFGRATPVELDFVQVTKL 176
>gi|329897158|ref|ZP_08271899.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC3088]
gi|328921375|gb|EGG28768.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC3088]
Length = 177
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EKK ++ R+ + ++ +P+E VV ++ G+K SER+F
Sbjct: 1 MSMRWYVVHAYSGYEKKVATALKERIDLHAMGDRFGDVLVPTEEVVEMKNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I+ +VE ++P
Sbjct: 61 FPGYVLVQMELDDDTWHLVKETPRVMGFIGGKADAPAPITDAEAQAILRRVEDGTEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF F G+V+ V+ EKSR++V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEMVRVVDGPFNDFYGVVEEVNYEKSRLNVAVLIFGRSTPVELEFSQVEK 176
>gi|330991780|ref|ZP_08315730.1| Transcription antitermination protein nusG [Gluconacetobacter sp.
SXCC-1]
gi|329761248|gb|EGG77742.1| Transcription antitermination protein nusG [Gluconacetobacter sp.
SXCC-1]
Length = 176
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 93/176 (52%), Positives = 123/176 (69%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ VYS EKK + I + ++ GL EI +PSE V +R+G+KVNSER+F
Sbjct: 1 MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEMRRGQKVNSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP+ E E IM Q + V+R S
Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPIPKVEAERIMKQAQEGVERVRPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE++ V+DGPF SFNG ++ VDEE+ R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VTFEIGEQIRVADGPFTSFNGTIEEVDEERGRLKVSVSIFGRSTPVDLEYNQVEKV 176
>gi|326793546|ref|YP_004311366.1| NusG antitermination factor [Marinomonas mediterranea MMB-1]
gi|326544310|gb|ADZ89530.1| NusG antitermination factor [Marinomonas mediterranea MMB-1]
Length = 177
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ YS EK + ++ R+ + L EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVQAYSGYEKHVMRALTERVQLMSMQDLFGEILVPTEEVVEIRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K T +V+GF+ GT + PSP+T E + I+ +V V +P
Sbjct: 61 YPGYVLVQMDMNDDSWHLVKGTSRVLGFIGGTADKPSPITQREADAILQRVNEGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEAGEVVRVNDGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176
>gi|114319607|ref|YP_741290.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226001|gb|ABI55800.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
Length = 177
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ YS EK+ S+ R+ R+G++ EI +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVIHAYSGFEKQVKRSLEERIKRAGMEDKFGEILVPTEEVVEMREGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ +H +K+ P+V+GF+G + P+P++D E E I+++V+ ++P
Sbjct: 61 FPGYVLVQMELDDETWHLVKEVPRVMGFIGGRSDRPAPISDREAEQILDRVKEGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEMVRVTDGPFADFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFDQVEK 176
>gi|28867842|ref|NP_790461.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato str. DC3000]
gi|66047787|ref|YP_237628.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae B728a]
gi|213969202|ref|ZP_03397340.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato T1]
gi|289675473|ref|ZP_06496363.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae FF5]
gi|301381709|ref|ZP_07230127.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato Max13]
gi|302130768|ref|ZP_07256758.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|28851078|gb|AAO54156.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato str. DC3000]
gi|63258494|gb|AAY39590.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. syringae B728a]
gi|213925880|gb|EEB59437.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato T1]
gi|330879467|gb|EGH13616.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
gi|330899748|gb|EGH31167.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. japonica str. M301072PT]
gi|330940869|gb|EGH43828.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330966923|gb|EGH67183.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. actinidiae str. M302091]
gi|330969834|gb|EGH69900.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aceris str. M302273PT]
gi|331018148|gb|EGH98204.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 177
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|167629453|ref|YP_001679952.1| transcription termination/antitermination factor nusg
[Heliobacterium modesticaldum Ice1]
gi|167592193|gb|ABZ83941.1| transcription termination/antitermination factor nusg
[Heliobacterium modesticaldum Ice1]
Length = 176
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ ++ + I +P E V ++ G++ ++R+
Sbjct: 3 MEKLWYVIHTYSGYENKVKANLERRVESMNMEDKIFRILVPMEDEVEIKNGKRKVTKRKV 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++ +MTD ++ +++TP V GF+G G P P+ SE+ HI+ + +
Sbjct: 63 FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGPGTKPIPLQPSEVAHILKSM--GYDEARTR 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F + E V V GPF F G ++++ EK ++ V V +FGR TPVEL ++QVEK+
Sbjct: 121 HDFALKENVRVISGPFQDFVGTIEDIQPEKGKLKVLVSMFGRETPVELDFSQVEKV 176
>gi|254470483|ref|ZP_05083887.1| transcription termination/antitermination factor NusG [Pseudovibrio
sp. JE062]
gi|211960794|gb|EEA95990.1| transcription termination/antitermination factor NusG [Pseudovibrio
sp. JE062]
Length = 177
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 99/176 (56%), Positives = 130/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN E+K E+I R + GL+ E+ +P+E+ V VR+GRKV+SER+F
Sbjct: 1 MAKRWYIVHAYSNFERKVAEAIKERAQQQGLEDSFDEVLVPTEKFVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K M+D YH I DTPKV GFLG + P P++++E + I+NQV+ V+ P S
Sbjct: 61 FPGYVLVKMEMSDDAYHLINDTPKVSGFLGNDKKPMPISEAEAQRILNQVQEGVETPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VDEE++R+ V V IFGR TPVEL Y QV+K+
Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDEERARLKVTVSIFGRATPVELEYGQVDKV 176
>gi|222148352|ref|YP_002549309.1| transcription antitermination protein NusG [Agrobacterium vitis S4]
gi|221735340|gb|ACM36303.1| transcription antitermination protein [Agrobacterium vitis S4]
Length = 176
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 108/176 (61%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS
Sbjct: 61 FPGYVLVRANLTDEVYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 LSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176
>gi|237797420|ref|ZP_04585881.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|330962537|gb|EGH62797.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. maculicola str. ES4326]
gi|331020270|gb|EGI00327.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 177
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|148256408|ref|YP_001240993.1| transcription antitermination protein NusG [Bradyrhizobium sp.
BTAi1]
gi|146408581|gb|ABQ37087.1| transcription antitermination protein nusG [Bradyrhizobium sp.
BTAi1]
Length = 185
Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 98/175 (56%), Positives = 130/175 (74%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YSN EKK ESI + + L+ L ++ +P E+V VR+GRK+++ER+FFP
Sbjct: 10 KRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPLEKVTEVRRGRKIDAERKFFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I+NQ++ V+RP SSV
Sbjct: 70 GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILNQMQEGVERPKSSVS 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL +NQVEKIV
Sbjct: 130 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFNQVEKIV 184
>gi|302344368|ref|YP_003808897.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075]
gi|301640981|gb|ADK86303.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075]
Length = 177
Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YS E K ES+ R+ GLD +I +P E+VV + KG++ S R+F
Sbjct: 1 MAKKWYIVHTYSGFENKVRESLTERVRSHGLDDYFGQILVPMEKVVEMVKGQRRESSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGY++++ M D+ +H +KDT KV GF+G E +P+P++D E + I++Q++ + P
Sbjct: 61 YPGYIVVEMEMNDETWHLVKDTAKVTGFVGGSETDPTPISDEEAQRILSQMQEGTKAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPF +FNG V+ V+ EK ++ V + IFGR TPVEL + QV K+
Sbjct: 121 KFNFEEGDEVRVIDGPFNNFNGSVEEVNPEKGKLRVLISIFGRATPVELEFVQVTKV 177
>gi|117924143|ref|YP_864760.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1]
gi|117607899|gb|ABK43354.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1]
Length = 176
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 91/176 (51%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY++ YS EK+ S+ ++ +G+ EI +PSE V+ +RKG KV SER+F
Sbjct: 1 MSKRWYVIHAYSGFEKRVKSSLEEKVRLTGMSKYFDEILVPSEEVIELRKGAKVTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K + D+ +H +KD PKV GFLG G P P++D E+E I+ QVE +++P
Sbjct: 61 FPGYVLVKMDLNDETWHLVKDIPKVAGFLGGGGRPQPLSDREVEKILQQVETGMEKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F VGE+V V+DGPF SFNG+V+ V+E+KSR+ V V IFGR TPVEL + QVEKI
Sbjct: 121 VSFAVGEQVRVTDGPFVSFNGVVEEVEEDKSRLKVSVSIFGRATPVELDFIQVEKI 176
>gi|187930386|ref|YP_001900873.1| transcription antitermination protein NusG [Ralstonia pickettii
12J]
gi|309782812|ref|ZP_07677532.1| transcription termination/antitermination factor NusG [Ralstonia
sp. 5_7_47FAA]
gi|187727276|gb|ACD28441.1| NusG antitermination factor [Ralstonia pickettii 12J]
gi|308918236|gb|EFP63913.1| transcription termination/antitermination factor NusG [Ralstonia
sp. 5_7_47FAA]
Length = 194
Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R GL HL +I +PSE V+ + GRK +ERR FP
Sbjct: 20 KRWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV ++ MTD+ +H +K+T KV GF+ GTG PSP++ SE++ IM Q++ V++P
Sbjct: 80 GYVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKT 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|225175687|ref|ZP_03729681.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1]
gi|225169016|gb|EEG77816.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1]
Length = 174
Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+V Y+ E K ++ R+ + + + +P E+ + ++ G+K + ++
Sbjct: 1 MSKNWYVVHTYAGYENKVKTNLEKRVESMEMQDKIFRVLVPMEKELEIKNGKKKETLKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++TD ++ +++TP V GF+G G P P++D+EI I+ Q+ +P
Sbjct: 61 FPGYVLVEMIVTDDSWYVVRNTPGVTGFVGPGSKPIPLSDAEISQILKQMGMGDSKP--K 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VGE V V+DGPFA+F G V+ V E++ ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 IDFSVGENVRVTDGPFANFVGSVEEVLEDRRKIKVLVSMFGRETPVELEFYQVEKL 174
>gi|91785478|ref|YP_560684.1| transcription antitermination protein NusG [Burkholderia xenovorans
LB400]
gi|187925629|ref|YP_001897271.1| transcription antitermination protein NusG [Burkholderia
phytofirmans PsJN]
gi|296163264|ref|ZP_06846028.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
gi|307731268|ref|YP_003908492.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
gi|323527615|ref|YP_004229768.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
gi|91689432|gb|ABE32632.1| transcription antitermination protein nusG [Burkholderia xenovorans
LB400]
gi|187716823|gb|ACD18047.1| NusG antitermination factor [Burkholderia phytofirmans PsJN]
gi|295886500|gb|EFG66354.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
gi|307585803|gb|ADN59201.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
gi|323384617|gb|ADX56708.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
Length = 185
Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDQFGQILVPTEEVVEVKGGHKSVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|34499653|ref|NP_903868.1| transcription antitermination protein NusG [Chromobacterium
violaceum ATCC 12472]
gi|34105503|gb|AAQ61858.1| transcription antitermination protein NusG [Chromobacterium
violaceum ATCC 12472]
Length = 177
Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats.
Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK +++ R+ RS + +I +P E VV V+ GRK +ER+F
Sbjct: 1 MAKRWYVVHAYSGFEKSVQKALRERIERSDIADQFGQILVPVEEVVDVKNGRKSITERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD +H +K TPKV GF+ GT P+P++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLVEMEMTDDTWHLVKSTPKVTGFVGGTANRPAPISKKEVEAIMQQMQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V DGPF FNG V V+ E++++ V V IFGR TPVEL ++QVEK+
Sbjct: 121 KVLFEVGEKVRVIDGPFNDFNGSVDEVNYERNKLRVSVQIFGRDTPVELEFSQVEKL 177
>gi|163859291|ref|YP_001633589.1| transcription antitermination protein NusG [Bordetella petrii DSM
12804]
gi|163263019|emb|CAP45322.1| transcription antitermination protein NusG [Bordetella petrii]
Length = 177
Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats.
Identities = 87/176 (49%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+GL I +PSE VV ++ G+K SERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEMKGGQKSISERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFL G+G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|170723918|ref|YP_001751606.1| transcription antitermination protein NusG [Pseudomonas putida
W619]
gi|169761921|gb|ACA75237.1| NusG antitermination factor [Pseudomonas putida W619]
Length = 177
Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGNVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177
>gi|217979960|ref|YP_002364107.1| NusG antitermination factor [Methylocella silvestris BL2]
gi|217505336|gb|ACK52745.1| NusG antitermination factor [Methylocella silvestris BL2]
Length = 176
Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats.
Identities = 102/176 (57%), Positives = 130/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + ++ GL EI +P+E+VV VR+GRK+NSER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIKEQAAQRGLSAKFEEILVPTEQVVEVRRGRKINSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K ++D +YH IK+TPKV GFLG + P P++D+E + I QV V+RP +S
Sbjct: 61 FPGYVLVKCDLSDDIYHLIKNTPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V+DGPFASFNG V+ VDE +SRV V V IFGR TPVEL Y QVEK+
Sbjct: 121 ISFEIGETVRVADGPFASFNGTVEEVDESRSRVKVAVSIFGRATPVELEYAQVEKV 176
>gi|26987183|ref|NP_742608.1| transcription antitermination protein NusG [Pseudomonas putida
KT2440]
gi|148545727|ref|YP_001265829.1| transcription antitermination protein NusG [Pseudomonas putida F1]
gi|167031488|ref|YP_001666719.1| transcription antitermination protein NusG [Pseudomonas putida
GB-1]
gi|325271153|ref|ZP_08137709.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51]
gi|24981819|gb|AAN66072.1|AE016236_6 transcription antitermination protein NusG [Pseudomonas putida
KT2440]
gi|148509785|gb|ABQ76645.1| transcription antitermination protein nusG [Pseudomonas putida F1]
gi|166857976|gb|ABY96383.1| NusG antitermination factor [Pseudomonas putida GB-1]
gi|324103705|gb|EGC00996.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51]
Length = 177
Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177
>gi|83591289|ref|YP_431298.1| transcription antitermination protein nusG [Moorella thermoacetica
ATCC 39073]
gi|83574203|gb|ABC20755.1| transcription antitermination protein nusG [Moorella thermoacetica
ATCC 39073]
Length = 175
Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ + + + +P E V ++ G++ +R+
Sbjct: 1 MEKAWYVIHTYSGYENKVKANLEKRVESMNMGDKIFRVVVPMEDEVQIKDGKRKIVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV+++ V+TD ++ +++TP V GF+GTG P P+ + E++ I+ Q+ V+ P
Sbjct: 61 YPGYVMVEMVLTDASWYVVRNTPGVTGFVGTGNKPIPLREEEVDQILQQM--GVEEPRPR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VGE V V+ GPF +F G ++ + +K ++ V V +FGR TP+EL +NQ+EKI
Sbjct: 119 IDVTVGENVRVTSGPFENFIGSIEEIMPDKGKLRVLVSMFGRETPIELDFNQIEKI 174
>gi|300309442|ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae
SmR1]
gi|300072227|gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae
SmR1]
Length = 196
Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R++R+G+ +I +P+E VV ++ G K +ERRFFP
Sbjct: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G P+P+ E++ ++ Q++ V++P V
Sbjct: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + Q+EK+
Sbjct: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196
>gi|170750243|ref|YP_001756503.1| NusG antitermination factor [Methylobacterium radiotolerans JCM
2831]
gi|170656765|gb|ACB25820.1| NusG antitermination factor [Methylobacterium radiotolerans JCM
2831]
Length = 177
Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats.
Identities = 99/176 (56%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL L E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG P P+ D+E E I QV V RP
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGVDRPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ FE+GE V V+DGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK
Sbjct: 121 SISFEIGETVRVADGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYAQVEK 176
>gi|237749504|ref|ZP_04579984.1| transcription antiterminator [Oxalobacter formigenes OXCC13]
gi|229380866|gb|EEO30957.1| transcription antiterminator [Oxalobacter formigenes OXCC13]
Length = 195
Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY+V VYS EK ++ R+ R G+ EI +P+E VV V+ G+K +ERRFF
Sbjct: 20 TMRWYVVHVYSGMEKSVRRALMERIERMGMTDQFGEILVPTEEVVEVKGGQKSVTERRFF 79
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY+L++ MTD+ +H ++DT KV GF+G P+P+ E+E ++ Q++ V +P
Sbjct: 80 PGYILVEMEMTDETWHLVRDTGKVTGFVGGKSNKPTPIPHREMEKLLQQMQDGVAKPRPK 139
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 ISYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195
>gi|89095350|ref|ZP_01168267.1| transcription antitermination protein NusG [Oceanospirillum sp.
MED92]
gi|89080392|gb|EAR59647.1| transcription antitermination protein NusG [Oceanospirillum sp.
MED92]
Length = 177
Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RW++V YS EK+ + ++ R+ + L E+ +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWFVVHAYSGYEKRVMNTLKERIELHSMQDLFGEVLVPTEEVVEIRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL+ M D+ +H +K+TP V+GF+ GT P+P+T++E I+++VE+ V +P
Sbjct: 61 YPGYVLVHMDMNDESWHLVKNTPHVLGFIGGTAGKPAPITEAEANEILSRVESGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA F+ +V+ ++ EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFADFDAVVEEINYEKNKLQVAVQIFGRTTPVELDFIQVEK 176
>gi|311109630|ref|YP_003982483.1| transcription termination/antitermination factor NusG
[Achromobacter xylosoxidans A8]
gi|310764319|gb|ADP19768.1| transcription termination/antitermination factor NusG
[Achromobacter xylosoxidans A8]
gi|317401591|gb|EFV82218.1| transcription antitermination protein NusG [Achromobacter
xylosoxidans C54]
Length = 177
Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats.
Identities = 87/176 (49%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+GL I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFL G+G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|37524443|ref|NP_927787.1| transcription antitermination protein NusG [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36783867|emb|CAE12729.1| transcription antitermination factor [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 181
Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|183597452|ref|ZP_02958945.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827]
gi|188023201|gb|EDU61241.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827]
Length = 181
Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181
>gi|104779743|ref|YP_606241.1| transcription antitermination protein NusG [Pseudomonas entomophila
L48]
gi|95108730|emb|CAK13424.1| transcription antitermination protein NusG [Pseudomonas entomophila
L48]
Length = 177
Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177
>gi|332091145|gb|EGI96235.1| transcription termination/antitermination factor NusG [Shigella
dysenteriae 155-74]
Length = 181
Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|288942084|ref|YP_003444324.1| NusG antitermination factor [Allochromatium vinosum DSM 180]
gi|288897456|gb|ADC63292.1| NusG antitermination factor [Allochromatium vinosum DSM 180]
Length = 177
Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats.
Identities = 83/177 (46%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY++ YS E + S+ + R+GLD L +I +P+E VV +R G++ SER+F
Sbjct: 1 MSKRWYVIHAYSGFEGQVKRSLEDHVKRAGLDELFGQILVPTEEVVEMRGGQQRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ +TD+ +H +K+ PKV+GF+ GTG+ P+P+ DS+ + I+ +++ ++P
Sbjct: 61 FPGYVLVHMELTDETWHLVKNVPKVMGFIGGTGDRPAPIPDSQADVILQRLQEGGEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E GE V V+DGPF FNG+V++VD +KSRV V V+IFGR TPVEL + QVEK+
Sbjct: 121 KVLYEPGEVVRVTDGPFTDFNGVVEDVDYDKSRVKVSVLIFGRSTPVELEFAQVEKV 177
>gi|253987827|ref|YP_003039183.1| transcription antitermination protein NusG [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253779277|emb|CAQ82438.1| transcription antitermination protein [Photorhabdus asymbiotica]
Length = 181
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181
>gi|319639537|ref|ZP_07994284.1| transcription antitermination protein nusG [Neisseria mucosa C102]
gi|317399108|gb|EFV79782.1| transcription antitermination protein nusG [Neisseria mucosa C102]
Length = 177
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R ++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIARENMEDYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ G+G P P++ + + I+ Q + V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++R+ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177
>gi|241664554|ref|YP_002982914.1| transcription antitermination protein NusG [Ralstonia pickettii
12D]
gi|240866581|gb|ACS64242.1| NusG antitermination factor [Ralstonia pickettii 12D]
Length = 194
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R GL HL +I +PSE V+ + GRK +ERR FP
Sbjct: 20 KRWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV ++ MTD+ +H +K+T KV GF+ GTG PSP++ SE++ IM Q++ V++P
Sbjct: 80 GYVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKT 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|120613169|ref|YP_972847.1| transcription antitermination protein nusG [Acidovorax citrulli
AAC00-1]
gi|120591633|gb|ABM35073.1| transcription antitermination protein nusG [Acidovorax citrulli
AAC00-1]
Length = 197
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 24 RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E++ I+NQ++ +P +
Sbjct: 84 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196
>gi|15640350|ref|NP_229977.1| transcription antitermination protein NusG [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121592079|ref|ZP_01679061.1| transcription antitermination protein NusG [Vibrio cholerae
2740-80]
gi|147673290|ref|YP_001218591.1| transcription antitermination protein NusG [Vibrio cholerae O395]
gi|153827148|ref|ZP_01979815.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2]
gi|227080535|ref|YP_002809086.1| transcription antitermination protein NusG [Vibrio cholerae M66-2]
gi|229506882|ref|ZP_04396390.1| transcription antitermination protein NusG [Vibrio cholerae BX
330286]
gi|229508687|ref|ZP_04398181.1| transcription antitermination protein NusG [Vibrio cholerae B33]
gi|229516069|ref|ZP_04405520.1| transcription antitermination protein NusG [Vibrio cholerae RC9]
gi|229519861|ref|ZP_04409294.1| transcription antitermination protein NusG [Vibrio cholerae TM
11079-80]
gi|229527016|ref|ZP_04416412.1| transcription antitermination protein NusG [Vibrio cholerae
12129(1)]
gi|229606396|ref|YP_002877044.1| transcription antitermination protein NusG [Vibrio cholerae
MJ-1236]
gi|254292282|ref|ZP_04963028.1| transcription antitermination protein NusG [Vibrio cholerae
AM-19226]
gi|254851632|ref|ZP_05240982.1| transcription antitermination protein NusG [Vibrio cholerae MO10]
gi|255747124|ref|ZP_05421067.1| transcription antitermination protein NusG [Vibrio cholera CIRS
101]
gi|258620708|ref|ZP_05715743.1| transcription antitermination protein NusG [Vibrio mimicus VM573]
gi|258624493|ref|ZP_05719439.1| transcription antitermination protein NusG [Vibrio mimicus VM603]
gi|262166950|ref|ZP_06034670.1| transcription antitermination protein NusG [Vibrio cholerae RC27]
gi|262172579|ref|ZP_06040257.1| transcription antitermination protein NusG [Vibrio mimicus MB-451]
gi|262401584|ref|ZP_06078151.1| transcription antitermination protein NusG [Vibrio sp. RC586]
gi|297582227|ref|ZP_06944143.1| transcription antitermination protein NusG [Vibrio cholerae RC385]
gi|298501284|ref|ZP_07011081.1| transcription termination/antitermination factor NusG [Vibrio
cholerae MAK 757]
gi|18203205|sp|Q9KV35|NUSG_VIBCH RecName: Full=Transcription antitermination protein nusG
gi|9654736|gb|AAF93496.1| transcription antitermination protein NusG [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121546217|gb|EAX56537.1| transcription antitermination protein NusG [Vibrio cholerae
2740-80]
gi|146315173|gb|ABQ19712.1| transcription antitermination protein NusG [Vibrio cholerae O395]
gi|149738976|gb|EDM53292.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2]
gi|150421804|gb|EDN13805.1| transcription antitermination protein NusG [Vibrio cholerae
AM-19226]
gi|227008423|gb|ACP04635.1| transcription antitermination protein NusG [Vibrio cholerae M66-2]
gi|227012179|gb|ACP08389.1| transcription antitermination protein NusG [Vibrio cholerae O395]
gi|229335539|gb|EEO01020.1| transcription antitermination protein NusG [Vibrio cholerae
12129(1)]
gi|229343102|gb|EEO08087.1| transcription antitermination protein NusG [Vibrio cholerae TM
11079-80]
gi|229346972|gb|EEO11939.1| transcription antitermination protein NusG [Vibrio cholerae RC9]
gi|229354322|gb|EEO19251.1| transcription antitermination protein NusG [Vibrio cholerae B33]
gi|229355987|gb|EEO20906.1| transcription antitermination protein NusG [Vibrio cholerae BX
330286]
gi|229369051|gb|ACQ59474.1| transcription antitermination protein NusG [Vibrio cholerae
MJ-1236]
gi|254847337|gb|EET25751.1| transcription antitermination protein NusG [Vibrio cholerae MO10]
gi|255735173|gb|EET90575.1| transcription antitermination protein NusG [Vibrio cholera CIRS
101]
gi|258583242|gb|EEW08045.1| transcription antitermination protein NusG [Vibrio mimicus VM603]
gi|258586906|gb|EEW11620.1| transcription antitermination protein NusG [Vibrio mimicus VM573]
gi|261893655|gb|EEY39641.1| transcription antitermination protein NusG [Vibrio mimicus MB-451]
gi|262024655|gb|EEY43336.1| transcription antitermination protein NusG [Vibrio cholerae RC27]
gi|262352299|gb|EEZ01428.1| transcription antitermination protein NusG [Vibrio sp. RC586]
gi|297533528|gb|EFH72373.1| transcription antitermination protein NusG [Vibrio cholerae RC385]
gi|297539975|gb|EFH76039.1| transcription termination/antitermination factor NusG [Vibrio
cholerae MAK 757]
gi|327483189|gb|AEA77596.1| Transcription antitermination protein NusG [Vibrio cholerae
LMA3894-4]
Length = 182
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|15804572|ref|NP_290613.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 EDL933]
gi|15834159|ref|NP_312932.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. Sakai]
gi|16131812|ref|NP_418409.1| transcription termination factor [Escherichia coli str. K-12
substr. MG1655]
gi|24115267|ref|NP_709777.1| transcription antitermination protein NusG [Shigella flexneri 2a
str. 301]
gi|30064735|ref|NP_838906.1| transcription antitermination protein NusG [Shigella flexneri 2a
str. 2457T]
gi|74314476|ref|YP_312895.1| transcription antitermination protein NusG [Shigella sonnei Ss046]
gi|82546324|ref|YP_410271.1| transcription antitermination protein NusG [Shigella boydii Sb227]
gi|82778843|ref|YP_405192.1| transcription antitermination protein NusG [Shigella dysenteriae
Sd197]
gi|89110057|ref|AP_003837.1| transcription termination factor [Escherichia coli str. K-12
substr. W3110]
gi|110807832|ref|YP_691352.1| transcription antitermination protein NusG [Shigella flexneri 5
str. 8401]
gi|157154871|ref|YP_001465473.1| transcription antitermination protein NusG [Escherichia coli
E24377A]
gi|157163450|ref|YP_001460768.1| transcription antitermination protein NusG [Escherichia coli HS]
gi|168759202|ref|ZP_02784209.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4401]
gi|168771452|ref|ZP_02796459.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4486]
gi|168780365|ref|ZP_02805372.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4076]
gi|168790340|ref|ZP_02815347.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC869]
gi|170022015|ref|YP_001726969.1| transcription antitermination protein NusG [Escherichia coli ATCC
8739]
gi|170083442|ref|YP_001732762.1| transcription termination factor [Escherichia coli str. K-12
substr. DH10B]
gi|170682823|ref|YP_001746366.1| transcription antitermination protein NusG [Escherichia coli
SMS-3-5]
gi|187730221|ref|YP_001882667.1| transcription antitermination protein NusG [Shigella boydii CDC
3083-94]
gi|188492529|ref|ZP_02999799.1| transcription termination/antitermination factor NusG [Escherichia
coli 53638]
gi|195939607|ref|ZP_03084989.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. EC4024]
gi|208812131|ref|ZP_03253460.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4045]
gi|208819832|ref|ZP_03260152.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4042]
gi|209399471|ref|YP_002273498.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4115]
gi|209921460|ref|YP_002295544.1| transcription antitermination protein NusG [Escherichia coli SE11]
gi|217325434|ref|ZP_03441518.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. TW14588]
gi|218551034|ref|YP_002384825.1| transcription antitermination protein NusG [Escherichia fergusonii
ATCC 35469]
gi|218556536|ref|YP_002389450.1| transcription antitermination protein NusG [Escherichia coli IAI1]
gi|218697689|ref|YP_002405356.1| transcription antitermination protein NusG [Escherichia coli 55989]
gi|218702612|ref|YP_002410241.1| transcription antitermination protein NusG [Escherichia coli IAI39]
gi|218707600|ref|YP_002415119.1| transcription antitermination protein NusG [Escherichia coli
UMN026]
gi|238903038|ref|YP_002928834.1| transcription termination factor [Escherichia coli BW2952]
gi|253775389|ref|YP_003038220.1| transcription antitermination protein NusG [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254039237|ref|ZP_04873286.1| transcription termination/antitermination factor NusG [Escherichia
sp. 1_1_43]
gi|254163923|ref|YP_003047031.1| transcription antitermination protein NusG [Escherichia coli B str.
REL606]
gi|254795980|ref|YP_003080817.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. TW14359]
gi|256021698|ref|ZP_05435563.1| transcription antitermination protein NusG [Shigella sp. D9]
gi|256026297|ref|ZP_05440162.1| transcription antitermination protein NusG [Escherichia sp.
4_1_40B]
gi|260846782|ref|YP_003224560.1| transcription termination factor NusG [Escherichia coli O103:H2
str. 12009]
gi|260858091|ref|YP_003231982.1| transcription termination factor NusG [Escherichia coli O26:H11
str. 11368]
gi|260870693|ref|YP_003237095.1| transcription termination factor NusG [Escherichia coli O111:H-
str. 11128]
gi|261227307|ref|ZP_05941588.1| transcription termination factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261257054|ref|ZP_05949587.1| transcription termination factor NusG [Escherichia coli O157:H7
str. FRIK966]
gi|291285396|ref|YP_003502214.1| Transcription antitermination protein nusG [Escherichia coli O55:H7
str. CB9615]
gi|293407598|ref|ZP_06651516.1| nusG [Escherichia coli FVEC1412]
gi|293413417|ref|ZP_06656077.1| transcription termination/antitermination factor NusG [Escherichia
coli B354]
gi|293417485|ref|ZP_06660108.1| transcription termination/antitermination factor NusG [Escherichia
coli B185]
gi|293474289|ref|ZP_06664698.1| transcription termination/antitermination factor NusG [Escherichia
coli B088]
gi|298383346|ref|ZP_06992938.1| transcription antitermination protein nusG [Escherichia coli
FVEC1302]
gi|300819792|ref|ZP_07099979.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 107-1]
gi|300824639|ref|ZP_07104747.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 119-7]
gi|300897605|ref|ZP_07116013.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 198-1]
gi|300907533|ref|ZP_07125173.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 84-1]
gi|300919397|ref|ZP_07135903.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 115-1]
gi|300925847|ref|ZP_07141692.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 182-1]
gi|300928799|ref|ZP_07144308.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 187-1]
gi|300938794|ref|ZP_07153506.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 21-1]
gi|300947415|ref|ZP_07161606.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 116-1]
gi|300954789|ref|ZP_07167218.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 175-1]
gi|301019394|ref|ZP_07183571.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 69-1]
gi|301023348|ref|ZP_07187140.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 196-1]
gi|301302207|ref|ZP_07208339.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 124-1]
gi|301326087|ref|ZP_07219485.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 78-1]
gi|301645764|ref|ZP_07245684.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 146-1]
gi|307140673|ref|ZP_07500029.1| transcription antitermination protein NusG [Escherichia coli H736]
gi|307315045|ref|ZP_07594631.1| NusG antitermination factor [Escherichia coli W]
gi|309783933|ref|ZP_07678578.1| transcription termination/antitermination factor NusG [Shigella
dysenteriae 1617]
gi|309797685|ref|ZP_07692071.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 145-7]
gi|312974232|ref|ZP_07788402.1| transcription termination/antitermination factor NusG [Escherichia
coli 1827-70]
gi|331644716|ref|ZP_08345834.1| transcription termination/antitermination factor NusG [Escherichia
coli H736]
gi|331655679|ref|ZP_08356669.1| transcription termination/antitermination factor NusG [Escherichia
coli M718]
gi|331665636|ref|ZP_08366532.1| transcription termination/antitermination factor NusG [Escherichia
coli TA143]
gi|331670834|ref|ZP_08371669.1| transcription termination/antitermination factor NusG [Escherichia
coli TA271]
gi|331680102|ref|ZP_08380763.1| transcription termination/antitermination factor NusG [Escherichia
coli H591]
gi|331685723|ref|ZP_08386305.1| transcription termination/antitermination factor NusG [Escherichia
coli H299]
gi|84028777|sp|P0AFG1|NUSG_ECO57 RecName: Full=Transcription antitermination protein nusG
gi|84028778|sp|P0AFG0|NUSG_ECOLI RecName: Full=Transcription antitermination protein nusG
gi|84028779|sp|P0AFG2|NUSG_SHIFL RecName: Full=Transcription antitermination protein nusG
gi|209447284|pdb|2JVV|A Chain A, Solution Structure Of E. Coli Nusg Carboxyterminal Domain
gi|12518904|gb|AAG59178.1|AE005629_7 component in transcription antitermination [Escherichia coli
O157:H7 str. EDL933]
gi|147801|gb|AAA24622.1| NusG protein [Escherichia coli]
gi|396321|gb|AAC43080.1| ORF_o181 [Escherichia coli str. K-12 substr. MG1655]
gi|1790414|gb|AAC76956.1| transcription termination factor [Escherichia coli str. K-12
substr. MG1655]
gi|13364381|dbj|BAB38328.1| component in transcription antitermination [Escherichia coli
O157:H7 str. Sakai]
gi|24054560|gb|AAN45484.1| component in transcription antitermination [Shigella flexneri 2a
str. 301]
gi|30042995|gb|AAP18717.1| component in transcription antitermination [Shigella flexneri 2a
str. 2457T]
gi|73857953|gb|AAZ90660.1| component in transcription antitermination [Shigella sonnei Ss046]
gi|81242991|gb|ABB63701.1| component in transcription antitermination [Shigella dysenteriae
Sd197]
gi|81247735|gb|ABB68443.1| NusG [Shigella boydii Sb227]
gi|85676088|dbj|BAE77338.1| transcription termination factor [Escherichia coli str. K12 substr.
W3110]
gi|110617380|gb|ABF06047.1| component in transcription antitermination [Shigella flexneri 5
str. 8401]
gi|157069130|gb|ABV08385.1| transcription termination/antitermination factor NusG [Escherichia
coli HS]
gi|157076901|gb|ABV16609.1| transcription termination/antitermination factor NusG [Escherichia
coli E24377A]
gi|169756943|gb|ACA79642.1| NusG antitermination factor [Escherichia coli ATCC 8739]
gi|169891277|gb|ACB04984.1| transcription termination factor [Escherichia coli str. K-12
substr. DH10B]
gi|170520541|gb|ACB18719.1| transcription termination/antitermination factor NusG [Escherichia
coli SMS-3-5]
gi|187427213|gb|ACD06487.1| transcription termination/antitermination factor NusG [Shigella
boydii CDC 3083-94]
gi|188487728|gb|EDU62831.1| transcription termination/antitermination factor NusG [Escherichia
coli 53638]
gi|189001643|gb|EDU70629.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4076]
gi|189354220|gb|EDU72639.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4401]
gi|189359775|gb|EDU78194.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4486]
gi|189370168|gb|EDU88584.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC869]
gi|208733408|gb|EDZ82095.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4045]
gi|208739955|gb|EDZ87637.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4042]
gi|209160871|gb|ACI38304.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4115]
gi|209751858|gb|ACI74236.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751860|gb|ACI74237.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751862|gb|ACI74238.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751864|gb|ACI74239.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209751866|gb|ACI74240.1| 50S ribosomal subunit protein L11 [Escherichia coli]
gi|209914719|dbj|BAG79793.1| transcription antitermination protein [Escherichia coli SE11]
gi|217321655|gb|EEC30079.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. TW14588]
gi|218354421|emb|CAV01219.1| transcription termination factor [Escherichia coli 55989]
gi|218358575|emb|CAQ91223.1| transcription termination factor [Escherichia fergusonii ATCC
35469]
gi|218363305|emb|CAR00955.1| transcription termination factor [Escherichia coli IAI1]
gi|218372598|emb|CAR20473.1| transcription termination factor [Escherichia coli IAI39]
gi|218434697|emb|CAR15629.1| transcription termination factor [Escherichia coli UMN026]
gi|226838472|gb|EEH70502.1| transcription termination/antitermination factor NusG [Escherichia
sp. 1_1_43]
gi|238863680|gb|ACR65678.1| transcription termination factor [Escherichia coli BW2952]
gi|242379512|emb|CAQ34328.1| transcription termination factor NusG [Escherichia coli BL21(DE3)]
gi|253326433|gb|ACT31035.1| NusG antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975824|gb|ACT41495.1| transcription antitermination protein NusG [Escherichia coli B str.
REL606]
gi|253979980|gb|ACT45650.1| transcription antitermination protein NusG [Escherichia coli
BL21(DE3)]
gi|254595380|gb|ACT74741.1| transcription termination factor [Escherichia coli O157:H7 str.
TW14359]
gi|257756740|dbj|BAI28242.1| transcription termination factor NusG [Escherichia coli O26:H11
str. 11368]
gi|257761929|dbj|BAI33426.1| transcription termination factor NusG [Escherichia coli O103:H2
str. 12009]
gi|257767049|dbj|BAI38544.1| transcription termination factor NusG [Escherichia coli O111:H-
str. 11128]
gi|260451191|gb|ACX41613.1| NusG antitermination factor [Escherichia coli DH1]
gi|281603368|gb|ADA76352.1| Transcription antitermination protein nusG [Shigella flexneri
2002017]
gi|284924074|emb|CBG37173.1| transcription antitermination protein [Escherichia coli 042]
gi|290765269|gb|ADD59230.1| Transcription antitermination protein nusG [Escherichia coli O55:H7
str. CB9615]
gi|291321319|gb|EFE60760.1| transcription termination/antitermination factor NusG [Escherichia
coli B088]
gi|291425366|gb|EFE98406.1| nusG [Escherichia coli FVEC1412]
gi|291430812|gb|EFF03809.1| transcription termination/antitermination factor NusG [Escherichia
coli B185]
gi|291468012|gb|EFF10511.1| transcription termination/antitermination factor NusG [Escherichia
coli B354]
gi|298276225|gb|EFI17746.1| transcription antitermination protein nusG [Escherichia coli
FVEC1302]
gi|299880908|gb|EFI89119.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 196-1]
gi|300318258|gb|EFJ68042.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 175-1]
gi|300358652|gb|EFJ74522.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 198-1]
gi|300399278|gb|EFJ82816.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 69-1]
gi|300400740|gb|EFJ84278.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 84-1]
gi|300413532|gb|EFJ96842.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 115-1]
gi|300418072|gb|EFK01383.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 182-1]
gi|300452984|gb|EFK16604.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 116-1]
gi|300456278|gb|EFK19771.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 21-1]
gi|300463210|gb|EFK26703.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 187-1]
gi|300522888|gb|EFK43957.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 119-7]
gi|300527613|gb|EFK48675.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 107-1]
gi|300842370|gb|EFK70130.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 124-1]
gi|300847180|gb|EFK74940.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 78-1]
gi|301075975|gb|EFK90781.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 146-1]
gi|306905550|gb|EFN36083.1| NusG antitermination factor [Escherichia coli W]
gi|308118697|gb|EFO55959.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 145-7]
gi|308928304|gb|EFP73766.1| transcription termination/antitermination factor NusG [Shigella
dysenteriae 1617]
gi|309704397|emb|CBJ03746.1| transcription antitermination protein [Escherichia coli ETEC
H10407]
gi|310331399|gb|EFP98664.1| transcription termination/antitermination factor NusG [Escherichia
coli 1827-70]
gi|313648632|gb|EFS13072.1| transcription termination/antitermination factor NusG [Shigella
flexneri 2a str. 2457T]
gi|315063307|gb|ADT77634.1| transcription termination factor [Escherichia coli W]
gi|315138538|dbj|BAJ45697.1| transcription antitermination protein nusG [Escherichia coli DH1]
gi|315253054|gb|EFU33022.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 85-1]
gi|315617345|gb|EFU97951.1| transcription termination/antitermination factor NusG [Escherichia
coli 3431]
gi|320172757|gb|EFW47991.1| Transcription antitermination protein NusG [Shigella dysenteriae
CDC 74-1112]
gi|320179557|gb|EFW54508.1| Transcription antitermination protein NusG [Shigella boydii ATCC
9905]
gi|320185980|gb|EFW60728.1| Transcription antitermination protein NusG [Shigella flexneri CDC
796-83]
gi|320190922|gb|EFW65572.1| Transcription antitermination protein NusG [Escherichia coli
O157:H7 str. EC1212]
gi|320200179|gb|EFW74768.1| Transcription antitermination protein NusG [Escherichia coli
EC4100B]
gi|320639072|gb|EFX08712.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. G5101]
gi|320644466|gb|EFX13529.1| transcription antitermination protein NusG [Escherichia coli
O157:H- str. 493-89]
gi|320649785|gb|EFX18306.1| transcription antitermination protein NusG [Escherichia coli
O157:H- str. H 2687]
gi|320655118|gb|EFX23074.1| transcription antitermination protein NusG [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320660762|gb|EFX28216.1| transcription antitermination protein NusG [Escherichia coli O55:H7
str. USDA 5905]
gi|320665880|gb|EFX32911.1| transcription antitermination protein NusG [Escherichia coli
O157:H7 str. LSU-61]
gi|323155526|gb|EFZ41704.1| transcription termination/antitermination factor NusG [Escherichia
coli EPECa14]
gi|323161296|gb|EFZ47206.1| transcription termination/antitermination factor NusG [Escherichia
coli E128010]
gi|323167452|gb|EFZ53160.1| transcription termination/antitermination factor NusG [Shigella
sonnei 53G]
gi|323174509|gb|EFZ60134.1| transcription termination/antitermination factor NusG [Escherichia
coli LT-68]
gi|323177535|gb|EFZ63120.1| transcription termination/antitermination factor NusG [Escherichia
coli 1180]
gi|323182079|gb|EFZ67489.1| transcription termination/antitermination factor NusG [Escherichia
coli 1357]
gi|323380629|gb|ADX52897.1| NusG antitermination factor [Escherichia coli KO11]
gi|323933976|gb|EGB30450.1| transcription termination/antitermination protein NusG [Escherichia
coli E1520]
gi|323938901|gb|EGB35121.1| transcription termination/antitermination protein NusG [Escherichia
coli E482]
gi|323943601|gb|EGB39710.1| transcription termination/antitermination protein NusG [Escherichia
coli H120]
gi|323958908|gb|EGB54583.1| transcription termination/antitermination protein NusG [Escherichia
coli H489]
gi|323963800|gb|EGB59299.1| transcription termination/antitermination protein NusG [Escherichia
coli M863]
gi|323969055|gb|EGB64363.1| transcription termination/antitermination protein NusG [Escherichia
coli TA007]
gi|323974182|gb|EGB69314.1| transcription termination/antitermination protein NusG [Escherichia
coli TW10509]
gi|324017335|gb|EGB86554.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 117-3]
gi|324110894|gb|EGC04886.1| transcription termination/antitermination protein NusG [Escherichia
fergusonii B253]
gi|324115413|gb|EGC09358.1| transcription termination/antitermination protein NusG [Escherichia
coli E1167]
gi|325499286|gb|EGC97145.1| transcription antitermination protein NusG [Escherichia fergusonii
ECD227]
gi|326347168|gb|EGD70898.1| Transcription antitermination protein NusG [Escherichia coli
O157:H7 str. 1125]
gi|326347581|gb|EGD71303.1| Transcription antitermination protein NusG [Escherichia coli
O157:H7 str. 1044]
gi|327250452|gb|EGE62162.1| transcription termination/antitermination factor NusG [Escherichia
coli STEC_7v]
gi|331036016|gb|EGI08253.1| transcription termination/antitermination factor NusG [Escherichia
coli H736]
gi|331046604|gb|EGI18691.1| transcription termination/antitermination factor NusG [Escherichia
coli M718]
gi|331057154|gb|EGI29146.1| transcription termination/antitermination factor NusG [Escherichia
coli TA143]
gi|331061922|gb|EGI33846.1| transcription termination/antitermination factor NusG [Escherichia
coli TA271]
gi|331072257|gb|EGI43591.1| transcription termination/antitermination factor NusG [Escherichia
coli H591]
gi|331077033|gb|EGI48249.1| transcription termination/antitermination factor NusG [Escherichia
coli H299]
gi|332083870|gb|EGI89083.1| transcription termination/antitermination factor NusG [Shigella
boydii 5216-82]
gi|332092312|gb|EGI97387.1| transcription termination/antitermination factor NusG [Shigella
boydii 3594-74]
gi|332105293|gb|EGJ08639.1| transcription antitermination protein nusG [Shigella sp. D9]
Length = 181
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|186477601|ref|YP_001859071.1| transcription antitermination protein NusG [Burkholderia phymatum
STM815]
gi|184194060|gb|ACC72025.1| NusG antitermination factor [Burkholderia phymatum STM815]
Length = 185
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKSVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|56477582|ref|YP_159171.1| transcription antitermination protein NusG [Aromatoleum aromaticum
EbN1]
gi|56313625|emb|CAI08270.1| transcription antitermination protein [Aromatoleum aromaticum EbN1]
Length = 177
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY+V YS EK ++ R++RSG+ +I +P E VV ++ G+K SER+F
Sbjct: 1 MTKRWYVVHAYSGFEKSVQRALVDRINRSGMQDFFGQILVPVEEVVEMKSGQKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +K TPKV GF+ GT PSP+++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPSPISEKEVEKIMQQMQEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +E+GE V V +GPF F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLWELGEVVRVKEGPFTDFHGAVEDVNYDKSKLRVSVTIFGRATPVELDFSQVEK 176
>gi|89902361|ref|YP_524832.1| NusG antitermination factor [Rhodoferax ferrireducens T118]
gi|89347098|gb|ABD71301.1| transcription antitermination protein nusG [Rhodoferax
ferrireducens T118]
Length = 202
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++RSG+ H I +P E VV ++ G+K +ER+FFPG
Sbjct: 29 RWYVVHAYSGMEKAVERNITERINRSGMQHKFGRILVPMEEVVEIKNGQKKTTERKFFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H +K T KV GF+G P+P++++E+ I+NQ++ ++P V
Sbjct: 89 YVLVEMVMDDDTWHLVKHTNKVTGFVGGLKTRPAPISEAEVLKIVNQMQEGTEKPRHKVE 148
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V V DGPF FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK
Sbjct: 149 FEVGEFVRVKDGPFTDFNGSVEDVNYEKSKVRVAVTIFGRATPVELDFSQIEK 201
>gi|242241132|ref|YP_002989313.1| transcription antitermination protein NusG [Dickeya dadantii
Ech703]
gi|251791448|ref|YP_003006169.1| transcription antitermination protein NusG [Dickeya zeae Ech1591]
gi|242133189|gb|ACS87491.1| NusG antitermination factor [Dickeya dadantii Ech703]
gi|247540069|gb|ACT08690.1| NusG antitermination factor [Dickeya zeae Ech1591]
Length = 181
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|168777407|ref|ZP_02802414.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4196]
gi|187767347|gb|EDU31191.1| transcription termination/antitermination factor NusG [Escherichia
coli O157:H7 str. EC4196]
Length = 181
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQHVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|163853396|ref|YP_001641439.1| transcription termination/antitermination factor NusG
[Methylobacterium extorquens PA1]
gi|188583667|ref|YP_001927112.1| NusG antitermination factor [Methylobacterium populi BJ001]
gi|218532254|ref|YP_002423070.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4]
gi|240140814|ref|YP_002965294.1| transcription termination factor [Methylobacterium extorquens AM1]
gi|254563324|ref|YP_003070419.1| transcription termination factor [Methylobacterium extorquens DM4]
gi|163665001|gb|ABY32368.1| transcription termination/antitermination factor NusG
[Methylobacterium extorquens PA1]
gi|179347165|gb|ACB82577.1| NusG antitermination factor [Methylobacterium populi BJ001]
gi|218524557|gb|ACK85142.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4]
gi|240010791|gb|ACS42017.1| transcription termination factor [Methylobacterium extorquens AM1]
gi|254270602|emb|CAX26605.1| transcription termination factor [Methylobacterium extorquens DM4]
Length = 177
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 99/177 (55%), Positives = 128/177 (72%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL L E+ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG + P P+ D+E E I QV+ V RP
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKAKPVPIPDAEAERIKGQVQEGVDRPKH 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V FE+GE V VSDGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 TVSFEIGETVRVSDGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYGQVEKV 177
>gi|300725138|ref|YP_003714466.1| transcription antitermination protein [Xenorhabdus nematophila ATCC
19061]
gi|297631683|emb|CBJ92396.1| component in transcription antitermination [Xenorhabdus nematophila
ATCC 19061]
Length = 181
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLQDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H +++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|284992892|ref|YP_003411446.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160]
gi|284066137|gb|ADB77075.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160]
Length = 272
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ ++ + +I +P+E V ++ G++ R+ PGY
Sbjct: 88 WYVIHSYAGYENKVKTNLESRIQSLDMEDYIFQIEVPTEEVTEIKNGKRTQVNRKKLPGY 147
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------E 111
+L++ + D+ + +++TP V GF+G PSP++ E+ ++
Sbjct: 148 LLVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLSIDEVVSLLAPAATPQAARTTETTST 207
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
P + V FEVGE V V DGPFA+ + ++ E+ ++ V V IFGR TPVEL++N
Sbjct: 208 TTAAAPTTVVDFEVGESVTVMDGPFATLPATINEINAEQQKLQVLVSIFGRETPVELSFN 267
Query: 172 QVEKI 176
QV+KI
Sbjct: 268 QVQKI 272
>gi|119899718|ref|YP_934931.1| transcription antitermination protein NusG [Azoarcus sp. BH72]
gi|119672131|emb|CAL96045.1| putative transcription antitermination protein [Azoarcus sp. BH72]
Length = 179
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY+V YS EK ++ R++R+G+ +I +P E VV ++ G+K SER+F
Sbjct: 3 MTKRWYVVHAYSGFEKSVQRALVDRINRAGMQDAFGQILVPVEEVVEMKGGQKSISERKF 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +K TPKV GF+ GT P+P+++ E+E IM Q++ V +P
Sbjct: 63 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPTPISEKEVEKIMQQMQEGVDKPRP 122
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V +GPF F+G V++V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 123 KVLFETGEVVRVKEGPFTDFHGSVEDVNYEKSKLRVSVTIFGRATPVELDFAQVEK 178
>gi|197104678|ref|YP_002130055.1| transcription antitermination protein NusG [Phenylobacterium
zucineum HLK1]
gi|196478098|gb|ACG77626.1| transcription antitermination protein NusG [Phenylobacterium
zucineum HLK1]
Length = 189
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 130/174 (74%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVNSER+FFP
Sbjct: 15 HKWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKFFP 74
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K MTD+ YH IK+TPKV GFLG+G P PV++ E+E I+ +E V+RP ++
Sbjct: 75 GYVLVKMEMTDEAYHLIKNTPKVTGFLGSGSKPIPVSEKEVERIVGAIEEGVERPKPTIT 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE+V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y QVEKI
Sbjct: 135 FEIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEKI 188
>gi|254501154|ref|ZP_05113305.1| transcription termination/antitermination factor NusG [Labrenzia
alexandrii DFL-11]
gi|222437225|gb|EEE43904.1| transcription termination/antitermination factor NusG [Labrenzia
alexandrii DFL-11]
Length = 176
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 100/176 (56%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL L EI +P E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MT++ +H I+DTPKV GFLG + P P+ + E I+NQV+ V RP S
Sbjct: 61 FPGYVLVKMDMTNEAFHLIRDTPKVTGFLGADQKPMPIPEKEALRIINQVQEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176
>gi|290477021|ref|YP_003469933.1| transcription antitermination protein [Xenorhabdus bovienii
SS-2004]
gi|289176366|emb|CBJ83171.1| component in transcription antitermination [Xenorhabdus bovienii
SS-2004]
Length = 181
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLDGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IM++++ +P
Sbjct: 67 GYVLVQMVMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMDRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|307946270|ref|ZP_07661605.1| transcription termination/antitermination factor NusG [Roseibium
sp. TrichSKD4]
gi|307769934|gb|EFO29160.1| transcription termination/antitermination factor NusG [Roseibium
sp. TrichSKD4]
Length = 177
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 100/176 (56%), Positives = 127/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL L EI +P E+V VR+GRKV +ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVTEVRRGRKVEAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MT++ +H IKDTPKV GFLG + P P+ + E I+NQV+ V RP S
Sbjct: 61 FPGYVLVKMDMTNEAFHLIKDTPKVTGFLGADQKPIPIPEREALQIINQVQEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176
>gi|167648397|ref|YP_001686060.1| transcription antitermination protein NusG [Caulobacter sp. K31]
gi|167350827|gb|ABZ73562.1| NusG antitermination factor [Caulobacter sp. K31]
Length = 185
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 98/174 (56%), Positives = 129/174 (74%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVN+ER+FFP
Sbjct: 11 HKWYIVHAYSNFEKKVAESIREQAKSHGLEDSFSEILVPTEDVVEIRRGRKVNAERKFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K ++D+ YH IK+TPKV GFLG+ P PV++ E++ I+ +E V+RP + V
Sbjct: 71 GYVLVKMHLSDEAYHLIKNTPKVTGFLGSASKPQPVSEKEVQRIVGAIEEGVERPKTVVL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y+QVEKI
Sbjct: 131 FEIGENVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYSQVEKI 184
>gi|83312245|ref|YP_422509.1| transcription antitermination protein NusG [Magnetospirillum
magneticum AMB-1]
gi|82947086|dbj|BAE51950.1| Transcription antiterminator [Magnetospirillum magneticum AMB-1]
Length = 177
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 98/175 (56%), Positives = 127/175 (72%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY++ VYS EKK +SI + + G+ +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3 TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGAKVNAERKFF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E I+ QV+ V+RP S+
Sbjct: 63 PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V VSDGPF SFNG+V+ VDEEK+R+ V V IFGR TPVEL Y+QVEKI
Sbjct: 123 IFEVGEQVRVSDGPFTSFNGLVEEVDEEKARLKVAVSIFGRSTPVELEYSQVEKI 177
>gi|152980025|ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp.
Marseille]
gi|151280102|gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille]
Length = 199
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R +R+G++ +I +P+E V+ V+ G K SERRFFP
Sbjct: 25 KRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSERRFFP 84
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G P+P+ E++ IM Q++ V++P V
Sbjct: 85 GYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKPRPKV 144
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 145 LYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199
>gi|209884793|ref|YP_002288650.1| transcription termination/antitermination factor NusG [Oligotropha
carboxidovorans OM5]
gi|209872989|gb|ACI92785.1| transcription termination/antitermination factor NusG [Oligotropha
carboxidovorans OM5]
Length = 176
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + L+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|316933506|ref|YP_004108488.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
gi|315601220|gb|ADU43755.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
Length = 176
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|262363486|gb|ACY60207.1| transcription antitermination protein [Yersinia pestis D106004]
Length = 181
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ YS E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAYSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|260893763|ref|YP_003239860.1| NusG antitermination factor [Ammonifex degensii KC4]
gi|260865904|gb|ACX53010.1| NusG antitermination factor [Ammonifex degensii KC4]
Length = 175
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E K ++ R++ ++ + I IP E V+ ++ G+K ++RR F
Sbjct: 3 ERRWYVIHTYSGYENKVKANLEKRIASMNMEDKIFNIVIPEEDVIEIKDGKKKATKRRIF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+L++ ++TD+ ++ +++TP V GF+G+G P P++D E+E I+ + + P +
Sbjct: 63 PGYILVEMILTDESWYVVRNTPGVTGFVGSGNKPVPLSDEEVEEILKRTRG--EAPRFRI 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V V+ GPF +F G+V+ V+ EK+++ V + +FGR TP+EL Y QVEKI
Sbjct: 121 DISPGEKVRVTSGPFQNFIGVVEEVNTEKAKLRVMISMFGRETPIELDYTQVEKI 175
>gi|82701887|ref|YP_411453.1| transcription antitermination protein NusG [Nitrosospira
multiformis ATCC 25196]
gi|82409952|gb|ABB74061.1| transcription antitermination protein nusG [Nitrosospira
multiformis ATCC 25196]
Length = 177
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EK ++ R+SR+G+ +I +P E V+ ++ G+K SER+F
Sbjct: 1 MEKKWYVVHAYSGFEKSVQRALKERISRAGMLDKFGQILVPVEEVIEMKAGQKNLSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K+TPKV GF+ GT NP+P+++ E+++I++Q++ V++P
Sbjct: 61 FPGYVLVEMEMTDETWHLVKNTPKVTGFIGGTAMNPTPISEKEVQNILHQIQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V +GPF F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFETGEAVRVKEGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFSQVEK 176
>gi|127511080|ref|YP_001092277.1| NusG antitermination factor [Shewanella loihica PV-4]
gi|126636375|gb|ABO22018.1| transcription antitermination protein nusG [Shewanella loihica
PV-4]
Length = 180
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++H E+ +P+E VV +R G++ SER+FFP
Sbjct: 6 KRWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKSERKFFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ + P V
Sbjct: 66 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAILQRLQETTESPTHRV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 126 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 179
>gi|284009039|emb|CBA75992.1| transcription antitermination protein [Arsenophonus nasoniae]
Length = 181
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ E+ +P+E V+ +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEARVAQSLREHIKLHAMEDKFGEVMVPTEEVMEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMTMDDDSWHLVRSVPRVMGFIGGTPDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181
>gi|146340039|ref|YP_001205087.1| transcription antitermination protein NusG [Bradyrhizobium sp.
ORS278]
gi|146192845|emb|CAL76850.1| component in transcription antitermination [Bradyrhizobium sp.
ORS278]
Length = 185
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 96/175 (54%), Positives = 128/175 (73%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YSN EKK ESI + + L+ L ++ +P E V VR+GRK+N+ER+FFP
Sbjct: 10 KRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPIENVTEVRRGRKINAERKFFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +TD+ +H IK+TPKV GFLG P P+++ E I+NQ++ V+RP SSV
Sbjct: 70 GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEGEAMRILNQMQEGVERPKSSVS 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE+GE V V+DGPFASF+G+V+ +DE +SR+ V V IFGR TPVEL +NQVEK+V
Sbjct: 130 FEIGENVRVADGPFASFSGVVEEIDEARSRLKVAVSIFGRATPVELEFNQVEKVV 184
>gi|330953210|gb|EGH53470.1| transcription antitermination protein NusG [Pseudomonas syringae
Cit 7]
Length = 177
Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDT +V+GF+ GT + P+P+TD E E I +V +P
Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTSRVMGFIGGTADKPAPITDKEAEAIRRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176
>gi|146308935|ref|YP_001189400.1| transcription antitermination protein NusG [Pseudomonas mendocina
ymp]
gi|145577136|gb|ABP86668.1| transcription antitermination protein nusG [Pseudomonas mendocina
ymp]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H IKDTP+V+GF+ GT + P+P+T+ E E I+ +V + +P
Sbjct: 61 FPGYVLVQMEMNEATWHLIKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEMVRVVDGPFADFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 176
>gi|300702760|ref|YP_003744361.1| transcription termination factor [Ralstonia solanacearum CFBP2957]
gi|299070422|emb|CBJ41717.1| transcription termination factor [Ralstonia solanacearum CFBP2957]
Length = 194
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 87/174 (50%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFPG
Sbjct: 21 RWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MTD+ +H +K+T KV GF+ GTG P+P++ E++ IM Q++ V++P
Sbjct: 81 YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|16127435|ref|NP_421999.1| transcription antitermination protein NusG [Caulobacter crescentus
CB15]
gi|221236245|ref|YP_002518682.1| transcription antitermination protein NusG [Caulobacter crescentus
NA1000]
gi|295688156|ref|YP_003591849.1| NusG antitermination factor [Caulobacter segnis ATCC 21756]
gi|13424883|gb|AAK25167.1| transcription antitermination protein NusG [Caulobacter crescentus
CB15]
gi|220965418|gb|ACL96774.1| transcription antitermination protein nusG [Caulobacter crescentus
NA1000]
gi|295430059|gb|ADG09231.1| NusG antitermination factor [Caulobacter segnis ATCC 21756]
Length = 185
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 100/174 (57%), Positives = 128/174 (73%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVN+ER+FFP
Sbjct: 11 HKWYIVHAYSNFEKKVAESIREQAKNQGLEENFSEILVPTEDVVEIRRGRKVNAERKFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K ++D+ YH IK+TPKV GFLG+G P PV++ E++ I+ +E V P + V
Sbjct: 71 GYVLVKMNLSDEAYHLIKNTPKVTGFLGSGSKPMPVSEKEVQRIIGTIEEGVAAPKAVVL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL YNQVEKI
Sbjct: 131 YEVGENVRVTDGPFASFNGSVEYVDEEKARLRVTVSIFGRATPVELEYNQVEKI 184
>gi|83858578|ref|ZP_00952100.1| transcription antitermination protein NusG [Oceanicaulis alexandrii
HTCC2633]
gi|83853401|gb|EAP91253.1| transcription antitermination protein NusG [Oceanicaulis alexandrii
HTCC2633]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YSN EKK E+I + GL+ E+ +P+E VV VR+GRKVN+ER++
Sbjct: 1 MAAKWYIVHAYSNFEKKVAEAIKAEAALQGLEDKFEEVLVPTEEVVEVRRGRKVNAERKY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ YH +KDTP+V GFLG+G P+PV ++E+ IM Q+E +RP +
Sbjct: 61 FPGYVLVKMDMTDEAYHLVKDTPRVTGFLGSGRRPTPVPEAEVRRIMGQMEEDAERPRPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EVGE V V DG F SFNG+V+ VD+EK + V + IFGR TPVEL Y QVEKI
Sbjct: 121 VSYEVGETVRVIDGHFQSFNGLVEEVDDEKGVLKVAINIFGRATPVELEYAQVEKI 176
>gi|255067813|ref|ZP_05319668.1| transcription termination/antitermination factor NusG [Neisseria
sicca ATCC 29256]
gi|298370604|ref|ZP_06981919.1| transcription termination/antitermination factor NusG [Neisseria
sp. oral taxon 014 str. F0314]
gi|255047904|gb|EET43368.1| transcription termination/antitermination factor NusG [Neisseria
sicca ATCC 29256]
gi|298281214|gb|EFI22704.1| transcription termination/antitermination factor NusG [Neisseria
sp. oral taxon 014 str. F0314]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 84/177 (47%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ GT P+P++ E + I+ QV + V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRSGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|33591283|ref|NP_878927.1| transcription antitermination protein NusG [Bordetella pertussis
Tohama I]
gi|33599002|ref|NP_886562.1| transcription antitermination protein NusG [Bordetella
bronchiseptica RB50]
gi|33570925|emb|CAE40389.1| transcription antitermination protein NusG [Bordetella pertussis
Tohama I]
gi|33575048|emb|CAE30511.1| transcription antitermination protein NusG [Bordetella
bronchiseptica RB50]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFL G+G P+P+++ E+E I+NQ+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILNQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|193222431|emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas
arsenicoxydans]
Length = 192
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK + ++ R++R+G+ +I +P+E V+ V+ G+K SERRFFP
Sbjct: 18 KRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G P+P+ E++ IM Q++ V++P V
Sbjct: 78 GYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKV 137
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 138 LYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192
>gi|146281158|ref|YP_001171311.1| transcription antitermination protein NusG [Pseudomonas stutzeri
A1501]
gi|145569363|gb|ABP78469.1| transcription antitermination protein NusG [Pseudomonas stutzeri
A1501]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E E I+ +V +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVADGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|39936337|ref|NP_948613.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris CGA009]
gi|192292063|ref|YP_001992668.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris TIE-1]
gi|39650192|emb|CAE28715.1| transcription antitermination protein, NusG [Rhodopseudomonas
palustris CGA009]
gi|192285812|gb|ACF02193.1| NusG antitermination factor [Rhodopseudomonas palustris TIE-1]
Length = 176
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIKEQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|237654008|ref|YP_002890322.1| transcription antitermination protein NusG [Thauera sp. MZ1T]
gi|237625255|gb|ACR01945.1| NusG antitermination factor [Thauera sp. MZ1T]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK ++ R++RSG+ +I +P E V+ +R G+K +ER+F
Sbjct: 1 MSKRWYVVHAYSGFEKSVQRALIDRVNRSGMQDSFGQILVPVEEVIEMRGGQKTVTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +K TPKV GF+ GT P+P+++ E+E IM Q++ V +P
Sbjct: 61 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPAPISEKEVEKIMQQMQEGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE V V +GPF F+G V++ + EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEIGEVVRVKEGPFTDFHGSVEDANYEKNKLRVSVTIFGRATPVELDFAQVEK 176
>gi|94500508|ref|ZP_01307039.1| transcription antitermination protein NusG [Oceanobacter sp. RED65]
gi|94427298|gb|EAT12277.1| transcription antitermination protein NusG [Oceanobacter sp. RED65]
Length = 179
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 118/177 (66%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK+ + S+ ++ +G+ E+ +P+E V+ +R G+K SER+F
Sbjct: 1 MAMRWYVVHAYSGYEKRVMNSLKEQIEINGMQDCFGEVLVPTEEVIEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQ-RPV 118
+PGYVL++ M D +H +K+TP+V+GF+ GT + P+P+T E + I+ +V+ + +P
Sbjct: 61 YPGYVLVEMDMNDATWHLVKETPRVLGFIGGTADKPAPITKREADAILQRVKEGEEGQPT 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE + V DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 HKTIYEPGEMIRVIDGPFADFNGVVETVDYEKSRLKVAVTIFGRSTPVELEFGQVEK 177
>gi|312795756|ref|YP_004028678.1| transcription antitermination protein nusG [Burkholderia
rhizoxinica HKI 454]
gi|312167531|emb|CBW74534.1| Transcription antitermination protein nusG [Burkholderia
rhizoxinica HKI 454]
Length = 185
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV ++ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHKSVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|92117079|ref|YP_576808.1| transcription antitermination protein NusG [Nitrobacter
hamburgensis X14]
gi|91799973|gb|ABE62348.1| transcription antitermination protein nusG [Nitrobacter
hamburgensis X14]
Length = 176
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 95/176 (53%), Positives = 133/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK +ESI + + GL+ L ++ +P+E+V +R+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVLESIREQAKQRGLEDLFEQVLVPTEKVTEIRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|238798658|ref|ZP_04642132.1| Transcription antitermination protein nusG [Yersinia mollaretii
ATCC 43969]
gi|238717476|gb|EEQ09318.1| Transcription antitermination protein nusG [Yersinia mollaretii
ATCC 43969]
Length = 181
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|261344394|ref|ZP_05972038.1| transcription termination/antitermination factor NusG [Providencia
rustigianii DSM 4541]
gi|282567667|gb|EFB73202.1| transcription termination/antitermination factor NusG [Providencia
rustigianii DSM 4541]
Length = 181
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHAMEDYFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|197286619|ref|YP_002152491.1| transcription antitermination protein NusG [Proteus mirabilis
HI4320]
gi|227355188|ref|ZP_03839597.1| transcription antitermination protein [Proteus mirabilis ATCC
29906]
gi|194684106|emb|CAR45505.1| transcription antitermination protein [Proteus mirabilis HI4320]
gi|227164697|gb|EEI49551.1| transcription antitermination protein [Proteus mirabilis ATCC
29906]
Length = 181
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLNEMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H +++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|326319231|ref|YP_004236903.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323376067|gb|ADX48336.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 197
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 24 RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E++ I+NQ++ +P +
Sbjct: 84 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196
>gi|187476522|ref|YP_784546.1| transcription antitermination protein NusG [Bordetella avium 197N]
gi|115421108|emb|CAJ47592.1| transcription antitermination protein [Bordetella avium 197N]
Length = 177
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFL G+G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|78064911|ref|YP_367680.1| transcription antitermination protein NusG [Burkholderia sp. 383]
gi|107024316|ref|YP_622643.1| transcription antitermination protein NusG [Burkholderia
cenocepacia AU 1054]
gi|115350309|ref|YP_772148.1| transcription antitermination protein NusG [Burkholderia ambifaria
AMMD]
gi|116688359|ref|YP_833982.1| transcription antitermination protein NusG [Burkholderia
cenocepacia HI2424]
gi|134294430|ref|YP_001118165.1| transcription antitermination protein NusG [Burkholderia
vietnamiensis G4]
gi|161523416|ref|YP_001578428.1| transcription antitermination protein NusG [Burkholderia
multivorans ATCC 17616]
gi|170701415|ref|ZP_02892373.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10]
gi|170731669|ref|YP_001763616.1| transcription antitermination protein NusG [Burkholderia
cenocepacia MC0-3]
gi|171319353|ref|ZP_02908463.1| NusG antitermination factor [Burkholderia ambifaria MEX-5]
gi|172059328|ref|YP_001806980.1| transcription antitermination protein NusG [Burkholderia ambifaria
MC40-6]
gi|189351811|ref|YP_001947439.1| transcription antitermination protein NusG [Burkholderia
multivorans ATCC 17616]
gi|206558628|ref|YP_002229388.1| transcription antitermination protein NusG [Burkholderia
cenocepacia J2315]
gi|221201552|ref|ZP_03574590.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2M]
gi|221207373|ref|ZP_03580383.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2]
gi|221213511|ref|ZP_03586486.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD1]
gi|254246607|ref|ZP_04939928.1| transcription antitermination protein NusG [Burkholderia
cenocepacia PC184]
gi|77965656|gb|ABB07036.1| transcription antitermination protein nusG [Burkholderia sp. 383]
gi|105894505|gb|ABF77670.1| transcription antitermination protein nusG [Burkholderia
cenocepacia AU 1054]
gi|115280297|gb|ABI85814.1| transcription antitermination protein nusG [Burkholderia ambifaria
AMMD]
gi|116646448|gb|ABK07089.1| transcription antitermination protein nusG [Burkholderia
cenocepacia HI2424]
gi|124871383|gb|EAY63099.1| transcription antitermination protein NusG [Burkholderia
cenocepacia PC184]
gi|134137587|gb|ABO53330.1| transcription antitermination protein nusG [Burkholderia
vietnamiensis G4]
gi|160340845|gb|ABX13931.1| NusG antitermination factor [Burkholderia multivorans ATCC 17616]
gi|169814911|gb|ACA89494.1| NusG antitermination factor [Burkholderia cenocepacia MC0-3]
gi|170133667|gb|EDT02037.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171095424|gb|EDT40396.1| NusG antitermination factor [Burkholderia ambifaria MEX-5]
gi|171991845|gb|ACB62764.1| NusG antitermination factor [Burkholderia ambifaria MC40-6]
gi|189335833|dbj|BAG44903.1| transcriptional antiterminator [Burkholderia multivorans ATCC
17616]
gi|198034665|emb|CAR50532.1| transcription antitermination protein NusG [Burkholderia
cenocepacia J2315]
gi|221166963|gb|EED99434.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD1]
gi|221172961|gb|EEE05398.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2]
gi|221178368|gb|EEE10777.1| transcription termination/antitermination factor NusG [Burkholderia
multivorans CGD2M]
Length = 185
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G P+P++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRSTPVELEFGQVEKV 185
>gi|238025919|ref|YP_002910150.1| transcription antitermination protein NusG [Burkholderia glumae
BGR1]
gi|237875113|gb|ACR27446.1| Transcription antitermination protein NusG [Burkholderia glumae
BGR1]
Length = 185
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV VR G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|91977669|ref|YP_570328.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris BisB5]
gi|91684125|gb|ABE40427.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris BisB5]
Length = 176
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|15599471|ref|NP_252965.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
PAO1]
gi|116052310|ref|YP_788844.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152987944|ref|YP_001346211.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
PA7]
gi|218889397|ref|YP_002438261.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
LESB58]
gi|254237135|ref|ZP_04930458.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
C3719]
gi|254242920|ref|ZP_04936242.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
2192]
gi|296387168|ref|ZP_06876667.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
PAb1]
gi|14423808|sp|Q9HWC4|NUSG_PSEAE RecName: Full=Transcription antitermination protein nusG
gi|9950494|gb|AAG07663.1|AE004843_5 transcription antitermination protein NusG [Pseudomonas aeruginosa
PAO1]
gi|115587531|gb|ABJ13546.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169066|gb|EAZ54577.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
C3719]
gi|126196298|gb|EAZ60361.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
2192]
gi|150963102|gb|ABR85127.1| transcription termination/antitermination factor NusG [Pseudomonas
aeruginosa PA7]
gi|218769620|emb|CAW25380.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
LESB58]
Length = 177
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 85/177 (48%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +KDTP+V+GF+ GT + P+P+TD E + I+ +V + +P
Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177
>gi|56415975|ref|YP_153050.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197364902|ref|YP_002144539.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56130232|gb|AAV79738.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197096379|emb|CAR61984.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 181
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN ++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNCLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|53723867|ref|YP_104179.1| transcription antitermination protein NusG [Burkholderia mallei
ATCC 23344]
gi|121599293|ref|YP_994470.1| transcription antitermination protein NusG [Burkholderia mallei
SAVP1]
gi|124385674|ref|YP_001027880.1| transcription antitermination protein NusG [Burkholderia mallei
NCTC 10229]
gi|126449300|ref|YP_001082976.1| transcription antitermination protein NusG [Burkholderia mallei
NCTC 10247]
gi|238563289|ref|ZP_00439115.2| transcription termination/antitermination factor NusG [Burkholderia
mallei GB8 horse 4]
gi|254175266|ref|ZP_04881927.1| transcription termination/antitermination factor NusG [Burkholderia
mallei ATCC 10399]
gi|254357132|ref|ZP_04973406.1| transcription termination/antitermination factor NusG [Burkholderia
mallei 2002721280]
gi|52427290|gb|AAU47883.1| transcription antitermination protein NusG [Burkholderia mallei
ATCC 23344]
gi|121228103|gb|ABM50621.1| transcription termination/antitermination factor NusG [Burkholderia
mallei SAVP1]
gi|124293694|gb|ABN02963.1| transcription termination/antitermination factor NusG [Burkholderia
mallei NCTC 10229]
gi|126242170|gb|ABO05263.1| transcription termination/antitermination factor NusG [Burkholderia
mallei NCTC 10247]
gi|148026196|gb|EDK84281.1| transcription termination/antitermination factor NusG [Burkholderia
mallei 2002721280]
gi|160696311|gb|EDP86281.1| transcription termination/antitermination factor NusG [Burkholderia
mallei ATCC 10399]
gi|238520997|gb|EEP84452.1| transcription termination/antitermination factor NusG [Burkholderia
mallei GB8 horse 4]
Length = 185
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|121997661|ref|YP_001002448.1| NusG antitermination factor [Halorhodospira halophila SL1]
gi|121589066|gb|ABM61646.1| transcription antitermination protein nusG [Halorhodospira
halophila SL1]
Length = 177
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ YS EK+ S+ R+ R+G++ EI +P+E VV +R+G+K SER+F
Sbjct: 1 MALRWYVIHAYSGFEKQVQRSLQERIRRAGMEDKFGEILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+ P+V+GF+G + P+P++D E E I+++V ++P
Sbjct: 61 FPGYVLVQMELDDDTWHLVKEVPRVMGFIGGRPDRPAPISDREAEQILSRVREGAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V+DGPF FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEIVRVTDGPFTDFNGAVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 176
>gi|261364713|ref|ZP_05977596.1| transcription termination/antitermination factor NusG [Neisseria
mucosa ATCC 25996]
gi|288567009|gb|EFC88569.1| transcription termination/antitermination factor NusG [Neisseria
mucosa ATCC 25996]
Length = 177
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 84/177 (47%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ GT P+P++ E + I+ QV V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRTGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|53720834|ref|YP_109820.1| transcription antitermination protein NusG [Burkholderia
pseudomallei K96243]
gi|76809996|ref|YP_335155.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 1710b]
gi|83721510|ref|YP_443585.1| transcription antitermination protein NusG [Burkholderia
thailandensis E264]
gi|126441577|ref|YP_001060763.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 668]
gi|126454654|ref|YP_001068051.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 1106a]
gi|167564429|ref|ZP_02357345.1| transcription antitermination protein NusG [Burkholderia
oklahomensis EO147]
gi|167571575|ref|ZP_02364449.1| transcription antitermination protein NusG [Burkholderia
oklahomensis C6786]
gi|167582635|ref|ZP_02375509.1| transcription antitermination protein NusG [Burkholderia
thailandensis TXDOH]
gi|167620749|ref|ZP_02389380.1| transcription antitermination protein NusG [Burkholderia
thailandensis Bt4]
gi|167721589|ref|ZP_02404825.1| transcription antitermination protein NusG [Burkholderia
pseudomallei DM98]
gi|167740563|ref|ZP_02413337.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 14]
gi|167817768|ref|ZP_02449448.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 91]
gi|167826165|ref|ZP_02457636.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 9]
gi|167838224|ref|ZP_02465083.1| transcription antitermination protein NusG [Burkholderia
thailandensis MSMB43]
gi|167847677|ref|ZP_02473185.1| transcription antitermination protein NusG [Burkholderia
pseudomallei B7210]
gi|167896249|ref|ZP_02483651.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 7894]
gi|167904631|ref|ZP_02491836.1| transcription antitermination protein NusG [Burkholderia
pseudomallei NCTC 13177]
gi|167912896|ref|ZP_02499987.1| transcription antitermination protein NusG [Burkholderia
pseudomallei 112]
gi|167920856|ref|ZP_02507947.1| transcription antitermination protein NusG [Burkholderia
pseudomallei BCC215]
gi|217424755|ref|ZP_03456252.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 576]
gi|237814161|ref|YP_002898612.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei MSHR346]
gi|242316083|ref|ZP_04815099.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1106b]
gi|254198425|ref|ZP_04904846.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei S13]
gi|254257944|ref|ZP_04948998.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1710a]
gi|257137630|ref|ZP_05585892.1| transcription antitermination protein NusG [Burkholderia
thailandensis E264]
gi|52211248|emb|CAH37237.1| transcription antitermination protein NusG [Burkholderia
pseudomallei K96243]
gi|76579449|gb|ABA48924.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1710b]
gi|83655335|gb|ABC39398.1| transcription termination/antitermination factor NusG [Burkholderia
thailandensis E264]
gi|126221070|gb|ABN84576.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 668]
gi|126228296|gb|ABN91836.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1106a]
gi|169655165|gb|EDS87858.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei S13]
gi|217392211|gb|EEC32236.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 576]
gi|237506347|gb|ACQ98665.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei MSHR346]
gi|242139322|gb|EES25724.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1106b]
gi|254216633|gb|EET06017.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 1710a]
Length = 185
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|271498787|ref|YP_003331812.1| NusG antitermination factor [Dickeya dadantii Ech586]
gi|270342342|gb|ACZ75107.1| NusG antitermination factor [Dickeya dadantii Ech586]
Length = 181
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|167587784|ref|ZP_02380172.1| NusG antitermination factor [Burkholderia ubonensis Bu]
gi|254253528|ref|ZP_04946846.1| transcription antitermination protein NusG [Burkholderia dolosa
AUO158]
gi|124896137|gb|EAY70017.1| transcription antitermination protein NusG [Burkholderia dolosa
AUO158]
gi|325529724|gb|EGD06581.1| transcription antitermination protein NusG [Burkholderia sp. TJI49]
Length = 185
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G P+P++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|218290029|ref|ZP_03494196.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|258512684|ref|YP_003186118.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|218239863|gb|EED07051.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|257479410|gb|ACV59729.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 181
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++ YS E K ++ R+ G++ + + +P+E V ++ G+K +R+
Sbjct: 4 LEKQWYVIHTYSGYENKVKSNLESRVQTMGMEDRIFRVVVPTEEAVEIKNGKKRVVQRKT 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ +MTD ++ +++TP V GF+G+ G P P+ E+E I++ + V
Sbjct: 64 YPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSPGAGSKPVPLMPHEVEQILSSM--GVNEA 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F+VG+ V ++ GPFA G V+ V E ++ V V +FGR TP+E + QVE
Sbjct: 122 KPVAQFKVGDVVRLTSGPFADMVGTVEEVHPEHQKLKVLVSMFGRETPLEADFTQVE 178
>gi|172087775|ref|YP_205804.2| transcription termination factor NusG [Vibrio fischeri ES114]
gi|197335330|ref|YP_002157209.1| transcription termination/antitermination factor NusG [Vibrio
fischeri MJ11]
gi|171902362|gb|AAW86916.2| transcription termination factor NusG [Vibrio fischeri ES114]
gi|197316820|gb|ACH66267.1| transcription termination/antitermination factor NusG [Vibrio
fischeri MJ11]
Length = 181
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVSQSLREHIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEQASEAPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEAGEVVRVTEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFSQVEK 180
>gi|299135273|ref|ZP_07028464.1| NusG antitermination factor [Afipia sp. 1NLS2]
gi|298590250|gb|EFI50454.1| NusG antitermination factor [Afipia sp. 1NLS2]
Length = 176
Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASF+G+V+ VD+ +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDDARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|268592956|ref|ZP_06127177.1| transcription termination/antitermination factor NusG [Providencia
rettgeri DSM 1131]
gi|291311427|gb|EFE51880.1| transcription termination/antitermination factor NusG [Providencia
rettgeri DSM 1131]
Length = 181
Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHAMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|212709021|ref|ZP_03317149.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM
30120]
gi|212688310|gb|EEB47838.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM
30120]
Length = 181
Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|115525607|ref|YP_782518.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris BisA53]
gi|115519554|gb|ABJ07538.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris BisA53]
Length = 176
Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQSKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|182678325|ref|YP_001832471.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634208|gb|ACB94982.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
Length = 176
Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + ++ GL EI +P+E+VV +R+GRK+NSER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAAQRGLTEKFEEILVPTEQVVEIRRGRKINSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD++YH IK+TPKV GFLG + P P++D+E + I QV V+RP +S
Sbjct: 61 FPGYVLVKCDLTDELYHLIKETPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKTS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEVGETVRVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEYGQVEKV 176
>gi|53804629|ref|YP_113536.1| transcription antitermination protein NusG [Methylococcus
capsulatus str. Bath]
gi|53758390|gb|AAU92681.1| transcription antitermination protein NusG [Methylococcus
capsulatus str. Bath]
Length = 177
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++Q YSN E + S+ R++R+GL+H +I +P+E V+ +R+G++ ER+F
Sbjct: 1 MALRWYVIQAYSNFENRVKRSLEERIARAGLEHYFGKILVPTEEVLEMRQGQQRKGERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H ++D P+V+GF+G ++P+P++D+E E I+ +VE V++P
Sbjct: 61 FPGYVLVQMELNDDTWHLVRDVPRVLGFVGGTPDHPAPISDAEAEAILARVEEGVKKPKH 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +EVGE V V DGPF FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLYEVGEVVRVIDGPFKDFNGVVEEVNYEKSKLRVSVLIFGRSTPVELEFGQVEK 176
>gi|325288565|ref|YP_004264746.1| transcription antitermination protein nusG [Syntrophobotulus
glycolicus DSM 8271]
gi|324963966|gb|ADY54745.1| transcription antitermination protein nusG [Syntrophobotulus
glycolicus DSM 8271]
Length = 175
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K ++ R+ ++ + + +P E + V+ G+K S+R+
Sbjct: 1 MSKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEVKNGKKKISKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ MTD ++ +++TP V GF+G+G P P+ + E+ +I+ Q+ +++
Sbjct: 61 FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGSGSKPLPLLEHEVANILRQM--GLEKVRHK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V V GPF G+++ + EEK++V V V +FGR TPVEL + QV+K+
Sbjct: 119 IDVNVGQSVKVISGPFKDTIGVIQEILEEKAKVRVSVSMFGRETPVELEFGQVQKL 174
>gi|225076428|ref|ZP_03719627.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens
NRL30031/H210]
gi|241760434|ref|ZP_04758528.1| transcription termination/antitermination factor NusG [Neisseria
flavescens SK114]
gi|261381381|ref|ZP_05985954.1| transcription termination/antitermination factor NusG [Neisseria
subflava NJ9703]
gi|224952228|gb|EEG33437.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens
NRL30031/H210]
gi|241319103|gb|EER55596.1| transcription termination/antitermination factor NusG [Neisseria
flavescens SK114]
gi|284795628|gb|EFC50975.1| transcription termination/antitermination factor NusG [Neisseria
subflava NJ9703]
Length = 177
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R ++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIARENMEEYFGQILVPVEEVVDIKNGRKTISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+ G+G P P++ + + I+ Q + V++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNGIV V+ E++R+ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177
>gi|317046439|ref|YP_004114087.1| NusG antitermination factor [Pantoea sp. At-9b]
gi|316948056|gb|ADU67531.1| NusG antitermination factor [Pantoea sp. At-9b]
Length = 181
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|88799206|ref|ZP_01114785.1| transcription antitermination protein NusG [Reinekea sp. MED297]
gi|88777965|gb|EAR09161.1| transcription antitermination protein NusG [Reinekea sp. MED297]
Length = 177
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK+ S+ ++ + EI +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGYEKRVAGSLKEQVELQSMQDQFGEILVPTESVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D+ +H +KDTP+V+GF+ GT E P+P+T E E I+ +V+ +P
Sbjct: 61 YPGYVLVEMEMNDETWHLVKDTPRVMGFIGGTAEKPAPLTTREAEAILQRVKDGADKPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTIYEPGEVVRVIDGPFADFNGTVEKVNYEKSRLQVSVSIFGRATPVELEFVQVEK 176
>gi|329890177|ref|ZP_08268520.1| transcription termination/antitermination factor NusG
[Brevundimonas diminuta ATCC 11568]
gi|328845478|gb|EGF95042.1| transcription termination/antitermination factor NusG
[Brevundimonas diminuta ATCC 11568]
Length = 191
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 95/176 (53%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK E + + + GL+ +EI +P+E V+ +R+G+KVN+ER+FFP
Sbjct: 14 HKWYIVHAYSNFEKKVAEQLRDQAKQQGLEDAFSEILVPTEDVIEIRRGKKVNAERKFFP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYVL+K MTD+ YH +K+TPKV GFLG G P PV++ E+++I+ QVE V+RP +
Sbjct: 74 GYVLVKMEMTDEAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPT 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V V DGPFASF+G V++VDEE +R+ V V IFGR TPVEL YNQVEK+
Sbjct: 134 IRFDIGENVKVIDGPFASFDGQVESVDEENARLRVAVSIFGRPTPVELEYNQVEKV 189
>gi|330430119|gb|AEC21453.1| transcription antitermination protein NusG [Pusillimonas sp. T7-7]
Length = 177
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 88/176 (50%), Positives = 125/176 (71%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+GL+ +I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALVERIERAGLETSFGQILVPSEEVVEVKGGKKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFL G+G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPAPISEREVEKILSQMEEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFGQVEK 176
>gi|73542878|ref|YP_297398.1| transcription antitermination protein NusG [Ralstonia eutropha
JMP134]
gi|72120291|gb|AAZ62554.1| transcription antitermination protein nusG [Ralstonia eutropha
JMP134]
Length = 193
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP
Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P
Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193
>gi|126090327|ref|YP_001041770.1| NusG antitermination factor [Shewanella baltica OS155]
gi|152998737|ref|YP_001364418.1| NusG antitermination factor [Shewanella baltica OS185]
gi|160873314|ref|YP_001552630.1| NusG antitermination factor [Shewanella baltica OS195]
gi|217975213|ref|YP_002359964.1| NusG antitermination factor [Shewanella baltica OS223]
gi|304412753|ref|ZP_07394355.1| NusG antitermination factor [Shewanella baltica OS183]
gi|307307417|ref|ZP_07587152.1| NusG antitermination factor [Shewanella baltica BA175]
gi|125999947|gb|ABN64015.1| transcription antitermination protein nusG [Shewanella baltica
OS155]
gi|151363355|gb|ABS06355.1| NusG antitermination factor [Shewanella baltica OS185]
gi|160858836|gb|ABX47370.1| NusG antitermination factor [Shewanella baltica OS195]
gi|217500348|gb|ACK48541.1| NusG antitermination factor [Shewanella baltica OS223]
gi|304348833|gb|EFM13249.1| NusG antitermination factor [Shewanella baltica OS183]
gi|306910205|gb|EFN40638.1| NusG antitermination factor [Shewanella baltica BA175]
gi|315265541|gb|ADT92394.1| NusG antitermination factor [Shewanella baltica OS678]
Length = 183
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEEYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++D E + I+ +++ P
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRT 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IFEPGELVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
>gi|194291040|ref|YP_002006947.1| transcription antitermination protein nusg [Cupriavidus taiwanensis
LMG 19424]
gi|193224875|emb|CAQ70886.1| transcription termination factor [Cupriavidus taiwanensis LMG
19424]
Length = 193
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP
Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P
Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193
>gi|16762305|ref|NP_457922.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16767402|ref|NP_463017.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|26250751|ref|NP_756791.1| transcription antitermination protein NusG [Escherichia coli
CFT073]
gi|29143793|ref|NP_807135.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|62182602|ref|YP_219019.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|91212813|ref|YP_542799.1| transcription antitermination protein NusG [Escherichia coli UTI89]
gi|110644317|ref|YP_672047.1| transcription antitermination protein NusG [Escherichia coli 536]
gi|117626246|ref|YP_859569.1| transcription antitermination protein NusG [Escherichia coli APEC
O1]
gi|152972839|ref|YP_001337985.1| transcription antitermination protein NusG [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156935821|ref|YP_001439737.1| transcription antitermination protein NusG [Cronobacter sakazakii
ATCC BAA-894]
gi|161505371|ref|YP_001572483.1| transcription antitermination protein NusG [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161617284|ref|YP_001591249.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167554342|ref|ZP_02348083.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167995347|ref|ZP_02576437.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168239843|ref|ZP_02664901.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168245301|ref|ZP_02670233.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168264792|ref|ZP_02686765.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168467920|ref|ZP_02701757.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|170770133|ref|ZP_02904586.1| transcription termination/antitermination factor NusG [Escherichia
albertii TW07627]
gi|191172735|ref|ZP_03034273.1| transcription termination/antitermination factor NusG [Escherichia
coli F11]
gi|194442714|ref|YP_002043400.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194447628|ref|YP_002048135.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469896|ref|ZP_03075880.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194735416|ref|YP_002117051.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249353|ref|YP_002149059.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|198241913|ref|YP_002218065.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200388673|ref|ZP_03215285.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205354449|ref|YP_002228250.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207859326|ref|YP_002245977.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213022866|ref|ZP_03337313.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163867|ref|ZP_03349577.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213417733|ref|ZP_03350853.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213425733|ref|ZP_03358483.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213585780|ref|ZP_03367606.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213623116|ref|ZP_03375899.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213650883|ref|ZP_03380936.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213852740|ref|ZP_03382272.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|215489314|ref|YP_002331745.1| transcription antitermination protein NusG [Escherichia coli
O127:H6 str. E2348/69]
gi|218561048|ref|YP_002393961.1| transcription antitermination protein NusG [Escherichia coli S88]
gi|218692263|ref|YP_002400475.1| transcription antitermination protein NusG [Escherichia coli ED1a]
gi|224585690|ref|YP_002639489.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|227885489|ref|ZP_04003294.1| transcription antitermination protein NusG [Escherichia coli 83972]
gi|237702749|ref|ZP_04533230.1| transcription antitermination protein nusG [Escherichia sp.
3_2_53FAA]
gi|238892452|ref|YP_002917186.1| transcription antitermination protein NusG [Klebsiella pneumoniae
NTUH-K2044]
gi|238913727|ref|ZP_04657564.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|262043786|ref|ZP_06016888.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|289826708|ref|ZP_06545673.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|300979572|ref|ZP_07174615.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 45-1]
gi|300985575|ref|ZP_07177491.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 200-1]
gi|301047715|ref|ZP_07194775.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 185-1]
gi|306811997|ref|ZP_07446205.1| transcription antitermination protein NusG [Escherichia coli NC101]
gi|311281468|ref|YP_003943699.1| NusG antitermination factor [Enterobacter cloacae SCF1]
gi|312965365|ref|ZP_07779598.1| transcription termination/antitermination factor NusG [Escherichia
coli 2362-75]
gi|330004995|ref|ZP_08305079.1| transcription termination/antitermination factor NusG [Klebsiella
sp. MS 92-3]
gi|331649835|ref|ZP_08350913.1| transcription termination/antitermination factor NusG [Escherichia
coli M605]
gi|331660541|ref|ZP_08361474.1| transcription termination/antitermination factor NusG [Escherichia
coli TA206]
gi|88914910|sp|P0AA03|NUSG_SALTI RecName: Full=Transcription antitermination protein nusG
gi|90110822|sp|P0AA01|NUSG_ECOL6 RecName: Full=Transcription antitermination protein nusG
gi|90110823|sp|P0AA02|NUSG_SALTY RecName: Full=Transcription antitermination protein nusG
gi|25299619|pir||AB0934 transcription antitermination protein STY3737 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|26111182|gb|AAN83365.1|AE016770_165 Transcription antitermination protein nusG [Escherichia coli
CFT073]
gi|6960335|gb|AAF33495.1| 99% identity over 181 amino acids with E. coli transcription
antitermination factor (NUSG) (SW:P16921) [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|16422705|gb|AAL22976.1| component in transcription antitermination [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16504609|emb|CAD09492.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139428|gb|AAO70995.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62130235|gb|AAX67938.1| component in transcription antitermination [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|91074387|gb|ABE09268.1| transcription antitermination protein [Escherichia coli UTI89]
gi|110345909|gb|ABG72146.1| transcription antitermination protein NusG [Escherichia coli 536]
gi|115515370|gb|ABJ03445.1| transcription antitermination protein NusG [Escherichia coli APEC
O1]
gi|150957688|gb|ABR79718.1| transcription antitermination protein NusG [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156534075|gb|ABU78901.1| hypothetical protein ESA_03697 [Cronobacter sakazakii ATCC BAA-894]
gi|160866718|gb|ABX23341.1| hypothetical protein SARI_03516 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161366648|gb|ABX70416.1| hypothetical protein SPAB_05135 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|170121015|gb|EDS89946.1| transcription termination/antitermination factor NusG [Escherichia
albertii TW07627]
gi|190907039|gb|EDV66640.1| transcription termination/antitermination factor NusG [Escherichia
coli F11]
gi|194401377|gb|ACF61599.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194405932|gb|ACF66151.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456260|gb|EDX45099.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194710918|gb|ACF90139.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195629016|gb|EDX48408.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197213056|gb|ACH50453.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197287542|gb|EDY26935.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197936429|gb|ACH73762.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199605771|gb|EDZ04316.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205274230|emb|CAR39249.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205321448|gb|EDZ09287.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205326985|gb|EDZ13749.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205335974|gb|EDZ22738.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205346818|gb|EDZ33449.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206711129|emb|CAR35503.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|215267386|emb|CAS11837.1| transcription termination factor [Escherichia coli O127:H6 str.
E2348/69]
gi|218367817|emb|CAR05612.1| transcription termination factor [Escherichia coli S88]
gi|218429827|emb|CAR10653.1| transcription termination factor [Escherichia coli ED1a]
gi|222035693|emb|CAP78438.1| Transcription antitermination protein nusG [Escherichia coli LF82]
gi|224470218|gb|ACN48048.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|226903062|gb|EEH89321.1| transcription antitermination protein nusG [Escherichia sp.
3_2_53FAA]
gi|227837563|gb|EEJ48029.1| transcription antitermination protein NusG [Escherichia coli 83972]
gi|238544768|dbj|BAH61119.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259038873|gb|EEW40042.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|261249252|emb|CBG27114.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996446|gb|ACY91331.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|281181046|dbj|BAI57376.1| transcription antitermination protein [Escherichia coli SE15]
gi|294493401|gb|ADE92157.1| transcription termination/antitermination factor NusG [Escherichia
coli IHE3034]
gi|300300400|gb|EFJ56785.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 185-1]
gi|300306521|gb|EFJ61041.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 200-1]
gi|300409476|gb|EFJ93014.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 45-1]
gi|301160644|emb|CBW20175.1| transcription antitermination protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|305854602|gb|EFM55038.1| transcription antitermination protein NusG [Escherichia coli NC101]
gi|307556125|gb|ADN48900.1| transcription antitermination protein NusG [Escherichia coli ABU
83972]
gi|307628401|gb|ADN72705.1| transcription antitermination protein NusG [Escherichia coli UM146]
gi|308750663|gb|ADO50415.1| NusG antitermination factor [Enterobacter cloacae SCF1]
gi|312290039|gb|EFR17926.1| transcription termination/antitermination factor NusG [Escherichia
coli 2362-75]
gi|312915253|dbj|BAJ39227.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|312948556|gb|ADR29383.1| transcription antitermination protein NusG [Escherichia coli O83:H1
str. NRG 857C]
gi|315288350|gb|EFU47748.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 110-3]
gi|315294336|gb|EFU53687.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 153-1]
gi|315300755|gb|EFU59980.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 16-3]
gi|320088579|emb|CBY98338.1| Transcription antitermination protein nusG [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|320197123|gb|EFW71741.1| Transcription antitermination protein NusG [Escherichia coli
WV_060327]
gi|321223348|gb|EFX48415.1| Transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322616258|gb|EFY13168.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322617299|gb|EFY14201.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625929|gb|EFY22744.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626673|gb|EFY23475.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631508|gb|EFY28265.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635221|gb|EFY31939.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642612|gb|EFY39206.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646785|gb|EFY43289.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650784|gb|EFY47177.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322655917|gb|EFY52218.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657316|gb|EFY53595.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322665578|gb|EFY61763.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669761|gb|EFY65906.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322670960|gb|EFY67092.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322679216|gb|EFY75269.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322679374|gb|EFY75421.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322688141|gb|EFY84105.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322717098|gb|EFZ08669.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323132483|gb|ADX19913.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323190161|gb|EFZ75439.1| transcription termination/antitermination factor NusG [Escherichia
coli RN587/1]
gi|323193409|gb|EFZ78619.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200671|gb|EFZ85744.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202160|gb|EFZ87216.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209271|gb|EFZ94206.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211596|gb|EFZ96433.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323218066|gb|EGA02779.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221355|gb|EGA05777.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225718|gb|EGA09939.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230994|gb|EGA15111.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235776|gb|EGA19858.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240090|gb|EGA24136.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242577|gb|EGA26599.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249715|gb|EGA33622.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252598|gb|EGA36439.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256908|gb|EGA40620.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262070|gb|EGA45634.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323263925|gb|EGA47439.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323268462|gb|EGA51932.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323948846|gb|EGB44743.1| transcription termination/antitermination protein NusG [Escherichia
coli H252]
gi|323953805|gb|EGB49612.1| transcription termination/antitermination protein NusG [Escherichia
coli H263]
gi|324009471|gb|EGB78690.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 57-2]
gi|324015277|gb|EGB84496.1| transcription termination/antitermination factor NusG [Escherichia
coli MS 60-1]
gi|326625858|gb|EGE32203.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326629582|gb|EGE35925.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|328536459|gb|EGF62807.1| transcription termination/antitermination factor NusG [Klebsiella
sp. MS 92-3]
gi|330908299|gb|EGH36818.1| transcription antitermination protein NusG [Escherichia coli AA86]
gi|331041301|gb|EGI13453.1| transcription termination/antitermination factor NusG [Escherichia
coli M605]
gi|331052324|gb|EGI24362.1| transcription termination/antitermination factor NusG [Escherichia
coli TA206]
Length = 181
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|212634816|ref|YP_002311341.1| transcription antitermination protein NusG [Shewanella
piezotolerans WP3]
gi|212556300|gb|ACJ28754.1| Transcription antitermination protein NusG [Shewanella
piezotolerans WP3]
Length = 183
Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVCKSLNEHIKMHSMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTTESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 129 MFEAGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182
>gi|218710885|ref|YP_002418506.1| transcription antitermination protein NusG [Vibrio splendidus
LGP32]
gi|218323904|emb|CAV20265.1| transcription antitermination protein NusG [Vibrio splendidus
LGP32]
Length = 182
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ ++ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGYEGRVSQSLREHIKMHDMEEFFGDVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEAGEVVRVNDGPFADFNGTVEEVDYEKSRIKVSVSIFGRATPVELEFGQVEKL 181
>gi|158317804|ref|YP_001510312.1| NusG antitermination factor [Frankia sp. EAN1pec]
gi|158113209|gb|ABW15406.1| NusG antitermination factor [Frankia sp. EAN1pec]
Length = 273
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY
Sbjct: 100 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--VSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ ++ V +
Sbjct: 160 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVSILAPAAPKEKKVETVKAQE 219
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 220 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 273
>gi|224827266|ref|ZP_03700360.1| NusG antitermination factor [Lutiella nitroferrum 2002]
gi|224600555|gb|EEG06744.1| NusG antitermination factor [Lutiella nitroferrum 2002]
Length = 177
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 88/177 (49%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK +++ R+ RS + L ++ +P E VV V+ GRK SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKSVQKALRERIERSEVADLFGQVLVPVEEVVDVKNGRKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K TPKV GF+ GT P+P++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLVEMEMTDETWHLVKSTPKVTGFVGGTANRPAPISKKEVESIMQQMQEGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGERV V DGPF FNG V V+ E++++ V V IFGR TPVEL +NQVEK+
Sbjct: 121 KVLFEVGERVRVIDGPFNDFNGSVDEVNYERNKIRVSVQIFGRETPVELDFNQVEKL 177
>gi|330815227|ref|YP_004358932.1| Transcription antitermination protein NusG [Burkholderia gladioli
BSR3]
gi|327367620|gb|AEA58976.1| Transcription antitermination protein NusG [Burkholderia gladioli
BSR3]
Length = 185
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV VR G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185
>gi|86749396|ref|YP_485892.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris HaA2]
gi|86572424|gb|ABD06981.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris HaA2]
Length = 176
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|209964025|ref|YP_002296940.1| transcription antitermination protein NusG [Rhodospirillum centenum
SW]
gi|209957491|gb|ACI98127.1| Transcription antitermination protein NusG, putative
[Rhodospirillum centenum SW]
Length = 176
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 94/176 (53%), Positives = 126/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK ++I + + GL+ EI +P+E +V VR+G KVN+ER+F
Sbjct: 1 MAARWYVVHVYSGFEKKVAQAIREKAGQKGLEEKFEEILVPTEEIVEVRRGAKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K + D+ +H +K+TPKV GFLG G P P+++ E I+NQV+ ++RP S
Sbjct: 61 FPGYVLVKMELQDETWHLVKNTPKVTGFLGGGGKPQPISEGEAMRILNQVKEGIERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE+V V+DGPF SF G V+ VDE+K+RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 IQFEVGEQVRVTDGPFTSFTGYVEEVDEDKARVKVAVSIFGRATPVELEYTQVEKV 176
>gi|329850796|ref|ZP_08265641.1| transcription termination/antitermination factor NusG
[Asticcacaulis biprosthecum C19]
gi|328841111|gb|EGF90682.1| transcription termination/antitermination factor NusG
[Asticcacaulis biprosthecum C19]
Length = 191
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 90/173 (52%), Positives = 127/173 (73%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK ES+ + GL+ +EI +P+E VV VR+GRK NSER+FFP
Sbjct: 17 HKWYIVHAYSNFEKKVAESLRDQAKSQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFP 76
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K ++D+ YH +K+TPKV GFLG+G P PV++ E++ I+ V+AAV+RP +
Sbjct: 77 GYVLVKMELSDEAYHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVDAAVERPKPVLA 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F++GE+V ++ G FASF+G+V++ D E +R+ V V IFGR TPV+L Y+QVEK
Sbjct: 137 FDIGEKVKITSGHFASFDGVVESADPEHARLRVSVSIFGRATPVDLEYSQVEK 189
>gi|209520977|ref|ZP_03269713.1| NusG antitermination factor [Burkholderia sp. H160]
gi|209498579|gb|EDZ98698.1| NusG antitermination factor [Burkholderia sp. H160]
Length = 185
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ + +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQNQFGQILVPTEEVVEVKGGHKSVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|170738717|ref|YP_001767372.1| NusG antitermination factor [Methylobacterium sp. 4-46]
gi|168192991|gb|ACA14938.1| NusG antitermination factor [Methylobacterium sp. 4-46]
Length = 177
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 100/177 (56%), Positives = 129/177 (72%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG P P+ D+E E I QV+ +RP +
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVQEGTERPKA 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 SISFEVGESVRVADGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177
>gi|113869449|ref|YP_727938.1| transcription antitermination protein NusG [Ralstonia eutropha H16]
gi|113528225|emb|CAJ94570.1| transcription antitermination protein [Ralstonia eutropha H16]
Length = 193
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP
Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P
Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193
>gi|289641396|ref|ZP_06473560.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata]
gi|289508732|gb|EFD29667.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata]
Length = 269
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+S ++ + +I +P+E V ++ G++ +++ +PGY
Sbjct: 96 WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVIKNGKRQLVQQKKYPGY 155
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--VSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ ++ V
Sbjct: 156 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRTEEVLSILAPPAPREKKVETVRVQE 215
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 216 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 269
>gi|27364611|ref|NP_760139.1| transcription antitermination protein NusG [Vibrio vulnificus
CMCP6]
gi|37681348|ref|NP_935957.1| transcription antitermination protein NusG [Vibrio vulnificus
YJ016]
gi|320155005|ref|YP_004187384.1| transcription antitermination protein NusG [Vibrio vulnificus
MO6-24/O]
gi|32129818|sp|Q8DD25|NUSG_VIBVU RecName: Full=Transcription antitermination protein nusG
gi|27360730|gb|AAO09666.1| transcription termination/antitermination factor NusG [Vibrio
vulnificus CMCP6]
gi|37200099|dbj|BAC95928.1| transcription antiterminator [Vibrio vulnificus YJ016]
gi|319930317|gb|ADV85181.1| transcription antitermination protein NusG [Vibrio vulnificus
MO6-24/O]
Length = 182
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEEYFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P++D E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEADAILNRLEKASEAPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEVGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|120553640|ref|YP_957991.1| transcription antitermination protein NusG [Marinobacter aquaeolei
VT8]
gi|120323489|gb|ABM17804.1| transcription antitermination protein nusG [Marinobacter aquaeolei
VT8]
Length = 177
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + ++ R++ G++ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLKERVALEGMEDKFGEILVPTEEVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K+TP+V+GF+ GT + P+P+T+ E E I+ +VE+ +P
Sbjct: 61 YPGYVLVQMEMDDASWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEIVRVVEGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVELEFGQVEK 176
>gi|330444936|ref|ZP_08308590.1| transcription termination/antitermination factor NusG
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328493054|dbj|GAA03087.1| transcription termination/antitermination factor NusG
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 181
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E VV VR G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL+ VM D+ +H ++ P+V+GF+ GT + P+P++D E + I+N+++ A + PV
Sbjct: 67 GYVLVNMVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG +++VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 127 VFEPGEVVRVTDGPFADFNGTIESVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180
>gi|188532309|ref|YP_001906106.1| transcription antitermination protein NusG [Erwinia tasmaniensis
Et1/99]
gi|259906924|ref|YP_002647280.1| transcription antitermination protein NusG [Erwinia pyrifoliae
Ep1/96]
gi|188027351|emb|CAO95196.1| Transcription antitermination protein [Erwinia tasmaniensis Et1/99]
gi|224962546|emb|CAX54001.1| Transcription antitermination protein [Erwinia pyrifoliae Ep1/96]
gi|283476717|emb|CAY72546.1| Transcription antitermination protein nusG [Erwinia pyrifoliae DSM
12163]
gi|310766069|gb|ADP11019.1| transcription antitermination protein NusG [Erwinia sp. Ejp617]
Length = 181
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter
asiaticus str. psy62]
gi|38195603|gb|AAR13466.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|254039825|gb|ACT56621.1| transcription antitermination protein NusG [Candidatus Liberibacter
asiaticus str. psy62]
gi|255957547|dbj|BAH96610.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957843|dbj|BAH96817.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957853|dbj|BAH96826.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957863|dbj|BAH96835.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957873|dbj|BAH96844.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957883|dbj|BAH96853.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957893|dbj|BAH96862.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957903|dbj|BAH96871.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957913|dbj|BAH96880.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957923|dbj|BAH96889.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957933|dbj|BAH96898.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957943|dbj|BAH96907.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957953|dbj|BAH96916.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957963|dbj|BAH96925.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957973|dbj|BAH96934.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957983|dbj|BAH96943.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255957993|dbj|BAH96952.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958003|dbj|BAH96961.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958013|dbj|BAH96970.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958023|dbj|BAH96979.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958033|dbj|BAH96988.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958043|dbj|BAH96997.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958053|dbj|BAH97006.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958063|dbj|BAH97015.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958073|dbj|BAH97024.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958083|dbj|BAH97033.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958093|dbj|BAH97042.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958103|dbj|BAH97051.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958113|dbj|BAH97060.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|255958123|dbj|BAH97069.1| transcription antitermination component [Candidatus Liberibacter
asiaticus]
gi|283362133|dbj|BAI65920.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362143|dbj|BAI65929.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362153|dbj|BAI65938.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362163|dbj|BAI65947.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362173|dbj|BAI65956.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362183|dbj|BAI65965.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362193|dbj|BAI65974.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362203|dbj|BAI65983.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362213|dbj|BAI65992.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362223|dbj|BAI66001.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|283362233|dbj|BAI66010.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
Length = 177
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF
Sbjct: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS
Sbjct: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
>gi|307128974|ref|YP_003880990.1| transcription termination factor [Dickeya dadantii 3937]
gi|306526503|gb|ADM96433.1| transcription termination factor [Dickeya dadantii 3937]
Length = 181
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|257095052|ref|YP_003168693.1| transcription antitermination protein NusG [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047576|gb|ACV36764.1| NusG antitermination factor [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 177
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK ++ R+ R G++ I +P E VV ++ G+K SER+F
Sbjct: 1 MSMRWYVVHAYSGFEKSVQRALLERIQRQGMEESFGRILVPVEEVVELKMGQKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D +H +K TPKV GF+ GT PSP+++ E+ IM Q++ V +P
Sbjct: 61 FPGYVLVEMEMNDDSWHLVKSTPKVTGFVGGTANKPSPISEKEVAKIMQQMQEGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V DGPF F+G V+ V+ EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEVVRVKDGPFTDFHGAVEQVNYEKNRLRVSVTIFGRPTPVELEFAQVEK 176
>gi|149376698|ref|ZP_01894457.1| transcription antitermination protein NusG [Marinobacter algicola
DG893]
gi|149359071|gb|EDM47536.1| transcription antitermination protein NusG [Marinobacter algicola
DG893]
Length = 177
Score = 239 bits (612), Expect = 7e-62, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + ++ R++ +GL+ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLRERVALNGLEEKFGEILVPTEEVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K+TP+V+GF+ GT + P+P+T+ E E I+ +VE+ +P
Sbjct: 61 YPGYVLVQMEMDDGTWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEIVRVTEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176
>gi|308272991|emb|CBX29595.1| Transcription antitermination protein nusG [uncultured
Desulfobacterium sp.]
Length = 176
Score = 239 bits (612), Expect = 7e-62, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 115/176 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WYI+ VYS E K ++ +++ + +P+E+VV + KG++ S R+F
Sbjct: 1 MSLKWYILHVYSGFENKVKTALEEKIAAYNRPDKFGNVLVPTEQVVELVKGKRKTSTRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYVL++ + D+V+H + DT KV GFLG E P+P++D E E I+N++EA +P
Sbjct: 61 YPGYVLVQMDLDDEVWHIVNDTAKVSGFLGGREKPTPISDDEAEQILNRMEAGKLKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+FE G+ + V DGPF +FNG+V+ V+ EK ++ V V IFGR TPVEL + QV KI
Sbjct: 121 YYFETGDEIRVVDGPFTNFNGVVEEVNPEKGKIKVLVSIFGRSTPVELEFVQVTKI 176
>gi|94312270|ref|YP_585480.1| transcription antitermination protein NusG [Cupriavidus
metallidurans CH34]
gi|93356122|gb|ABF10211.1| transcription termination factor [Cupriavidus metallidurans CH34]
Length = 193
Score = 239 bits (612), Expect = 7e-62, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP
Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P
Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 193
>gi|323498408|ref|ZP_08103405.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM
21326]
gi|323316550|gb|EGA69564.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM
21326]
Length = 182
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|238785545|ref|ZP_04629526.1| Transcription antitermination protein nusG [Yersinia bercovieri
ATCC 43970]
gi|238713530|gb|EEQ05561.1| Transcription antitermination protein nusG [Yersinia bercovieri
ATCC 43970]
Length = 181
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|260774684|ref|ZP_05883589.1| transcription antitermination protein NusG [Vibrio coralliilyticus
ATCC BAA-450]
gi|260609403|gb|EEX35552.1| transcription antitermination protein NusG [Vibrio coralliilyticus
ATCC BAA-450]
Length = 182
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|90417547|ref|ZP_01225468.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2207]
gi|90330639|gb|EAS45929.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2207]
Length = 175
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 110/174 (63%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EKK ++ R+ L EI +P+E VV +R G K SER FFP
Sbjct: 1 MRWYVVHAYSGYEKKVSLALQDRIQLHNLQDKFGEILVPTEEVVEMRGGEKRTSERMFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ + D+ +H +K+TP+V+GF+G + P+P+TD E + I+ +V + + P
Sbjct: 61 GYVLVQMELDDESWHLVKETPRVMGFIGGKADKPAPITDKEADLILQRVHDSEEAPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+ GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 MFEPGELVRVTYGPFNDFNGTVEEVNYEKSRLRVAVSIFGRSTPVELEFTQVEK 174
>gi|90424962|ref|YP_533332.1| transcription antitermination protein NusG [Rhodopseudomonas
palustris BisB18]
gi|90106976|gb|ABD89013.1| transcription antitermination protein nusG [Rhodopseudomonas
palustris BisB18]
Length = 176
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 95/176 (53%), Positives = 131/176 (74%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRK+++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKIDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++ E I++QV+ V+RP +S
Sbjct: 61 FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEPEAMRILHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|92112542|ref|YP_572470.1| transcription antitermination protein NusG [Chromohalobacter
salexigens DSM 3043]
gi|91795632|gb|ABE57771.1| transcription antitermination protein nusG [Chromohalobacter
salexigens DSM 3043]
Length = 177
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK + S+ R+ G++ EI +P+E VV +R G++ SER+F
Sbjct: 1 MSKRWYVVHAYSGFEKHVMRSLMERVKMYGMEDQFGEILVPTEEVVEMRDGKRRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H + +TP+V+GF+G E P+P+T E + I+ +V+ +P
Sbjct: 61 YPGYVLVEMEMTDASWHLVNETPRVMGFIGGTPEKPAPITQKEADGILRRVQDGTDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFDPGETVRVVDGPFADFNGVVEEVNYEKSRLQVSVLIFGRSTPVELEFAQVEK 176
>gi|117918645|ref|YP_867837.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
gi|117610977|gb|ABK46431.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
Length = 183
Score = 239 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++D E + I+ +++ P V
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK
Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182
>gi|293602653|ref|ZP_06685095.1| transcription antitermination protein NusG [Achromobacter
piechaudii ATCC 43553]
gi|292818963|gb|EFF78002.1| transcription antitermination protein NusG [Achromobacter
piechaudii ATCC 43553]
Length = 177
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALVERIERAALQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFL G+G P+P+++ E+E I++Q+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|77918303|ref|YP_356118.1| transcription termination/antitermination factor NusG [Pelobacter
carbinolicus DSM 2380]
gi|77544386|gb|ABA87948.1| transcription antitermination protein nusG [Pelobacter carbinolicus
DSM 2380]
Length = 177
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K ++ R+ + G + L E+ IPSE VV ++ G + S R+F
Sbjct: 1 MSKKWYGVHTYSGFENKVKMTLEERIRQLGFEELFGEVLIPSETVVEMKNGERKTSTRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ + ++ +H +K+TPKV GF+G G P P++D E+ I ++E V+RP
Sbjct: 61 FPGYILVQMELNNETWHVVKNTPKVTGFVGGGSAPPPISDEEVAKITARMEEDVERPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGRVTPVEL + QVEK
Sbjct: 121 VAFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLKVMVSIFGRVTPVELEFIQVEK 175
>gi|54310503|ref|YP_131523.1| transcription antitermination protein NusG [Photobacterium
profundum SS9]
gi|46914946|emb|CAG21721.1| putative transcription antiterminator protein [Photobacterium
profundum SS9]
Length = 181
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEDYFDEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H ++ P+V+GF+ GT + P+P++D E + I+N+++ A + PV
Sbjct: 67 GYVLVQMVMNDQTWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V++VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 127 VFEPGEVVRVTDGPFADFNGVVEHVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180
>gi|85715149|ref|ZP_01046133.1| transcription antitermination protein NusG [Nitrobacter sp.
Nb-311A]
gi|85698064|gb|EAQ35937.1| transcription antitermination protein NusG [Nitrobacter sp.
Nb-311A]
Length = 176
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E IM+QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|329296854|ref|ZP_08254190.1| transcription antitermination protein NusG [Plautia stali symbiont]
Length = 181
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEARVAKSLQEHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|24371817|ref|NP_715859.1| transcription antitermination protein NusG [Shewanella oneidensis
MR-1]
gi|113968532|ref|YP_732325.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|114045695|ref|YP_736245.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
gi|24345622|gb|AAN53304.1|AE015471_9 transcription antitermination protein NusG [Shewanella oneidensis
MR-1]
gi|113883216|gb|ABI37268.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|113887137|gb|ABI41188.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
Length = 183
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++D E + I+ +++ P V
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
>gi|157147225|ref|YP_001454544.1| transcription antitermination protein NusG [Citrobacter koseri ATCC
BAA-895]
gi|261340891|ref|ZP_05968749.1| transcription termination/antitermination factor NusG [Enterobacter
cancerogenus ATCC 35316]
gi|283787345|ref|YP_003367210.1| transcription antitermination protein [Citrobacter rodentium
ICC168]
gi|296100610|ref|YP_003610756.1| transcription antitermination protein NusG [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|157084430|gb|ABV14108.1| hypothetical protein CKO_03008 [Citrobacter koseri ATCC BAA-895]
gi|282950799|emb|CBG90475.1| transcription antitermination protein [Citrobacter rodentium
ICC168]
gi|288316944|gb|EFC55882.1| transcription termination/antitermination factor NusG [Enterobacter
cancerogenus ATCC 35316]
gi|295055069|gb|ADF59807.1| transcription antitermination protein NusG [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295095132|emb|CBK84222.1| transcription antitermination protein nusG [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 181
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|292486722|ref|YP_003529592.1| transcription antitermination protein nusG [Erwinia amylovora
CFBP1430]
gi|292897955|ref|YP_003537324.1| transcription antitermination protein [Erwinia amylovora ATCC
49946]
gi|291197803|emb|CBJ44898.1| transcription antitermination protein [Erwinia amylovora ATCC
49946]
gi|291552139|emb|CBA19176.1| Transcription antitermination protein nusG [Erwinia amylovora
CFBP1430]
Length = 181
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|293394017|ref|ZP_06638321.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Serratia odorifera DSM 4582]
gi|291423457|gb|EFE96682.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Serratia odorifera DSM 4582]
Length = 181
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|331007102|ref|ZP_08330325.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC1989]
gi|330419097|gb|EGG93540.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC1989]
Length = 177
Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EKK ++ R+ + + L E+ +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGYEKKVSAALKERIELNDMQELFGEVLVPTEEVVEMRAGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD +H +K+TP+V+GF+G + P+P+T+ E + I+ +++ +V++P
Sbjct: 61 FPGYVLVQMELTDASWHLVKETPRVMGFIGGKADEPAPITEKEADLILQRIDDSVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKSRLQVAVLIFGRSTPVELEFGQVEK 176
>gi|22124394|ref|NP_667817.1| transcription antitermination protein NusG [Yersinia pestis KIM 10]
gi|45442869|ref|NP_994408.1| transcription antitermination protein NusG [Yersinia pestis biovar
Microtus str. 91001]
gi|51594633|ref|YP_068824.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis IP 32953]
gi|108809615|ref|YP_653531.1| transcription antitermination protein NusG [Yersinia pestis
Antiqua]
gi|108810380|ref|YP_646147.1| transcription antitermination protein NusG [Yersinia pestis
Nepal516]
gi|123440670|ref|YP_001004663.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145600993|ref|YP_001165069.1| transcription antitermination protein NusG [Yersinia pestis
Pestoides F]
gi|153949507|ref|YP_001402816.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis IP 31758]
gi|153997214|ref|ZP_02022321.1| transcription antitermination protein [Yersinia pestis CA88-4125]
gi|162421043|ref|YP_001607191.1| transcription antitermination protein NusG [Yersinia pestis Angola]
gi|165928331|ref|ZP_02224163.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165938150|ref|ZP_02226709.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. IP275]
gi|166012043|ref|ZP_02232941.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166214413|ref|ZP_02240448.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167402411|ref|ZP_02307871.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167422947|ref|ZP_02314700.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426816|ref|ZP_02318569.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|170022592|ref|YP_001719097.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis YPIII]
gi|186893634|ref|YP_001870746.1| transcription antitermination protein NusG [Yersinia
pseudotuberculosis PB1/+]
gi|218930757|ref|YP_002348632.1| transcription antitermination protein NusG [Yersinia pestis CO92]
gi|229837498|ref|ZP_04457660.1| transcription termination factor [Yersinia pestis Pestoides A]
gi|229839434|ref|ZP_04459593.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899996|ref|ZP_04515136.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900555|ref|ZP_04515681.1| transcription termination factor [Yersinia pestis Nepal516]
gi|238752784|ref|ZP_04614252.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC
43380]
gi|238760251|ref|ZP_04621395.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC
35236]
gi|238790611|ref|ZP_04634376.1| Transcription antitermination protein nusG [Yersinia frederiksenii
ATCC 33641]
gi|238794964|ref|ZP_04638561.1| Transcription antitermination protein nusG [Yersinia intermedia
ATCC 29909]
gi|270488911|ref|ZP_06205985.1| transcription termination/antitermination factor NusG [Yersinia
pestis KIM D27]
gi|294505420|ref|YP_003569482.1| transcription antitermination protein NusG [Yersinia pestis
Z176003]
gi|332159907|ref|YP_004296484.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|32129819|sp|Q8ZAP0|NUSG_YERPE RecName: Full=Transcription antitermination protein nusG
gi|21957175|gb|AAM84068.1|AE013648_10 component in transcription antitermination [Yersinia pestis KIM 10]
gi|45437735|gb|AAS63285.1| transcription antitermination protein [Yersinia pestis biovar
Microtus str. 91001]
gi|51587915|emb|CAH19518.1| transcription antitermination protein [Yersinia pseudotuberculosis
IP 32953]
gi|108774028|gb|ABG16547.1| transcription antitermination protein nusG [Yersinia pestis
Nepal516]
gi|108781528|gb|ABG15586.1| transcription antitermination protein nusG [Yersinia pestis
Antiqua]
gi|115349368|emb|CAL22339.1| transcription antitermination protein [Yersinia pestis CO92]
gi|122087631|emb|CAL10413.1| transcription antitermination protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145212689|gb|ABP42096.1| transcription antitermination protein nusG [Yersinia pestis
Pestoides F]
gi|149289322|gb|EDM39401.1| transcription antitermination protein [Yersinia pestis CA88-4125]
gi|152961002|gb|ABS48463.1| transcription termination/antitermination factor NusG [Yersinia
pseudotuberculosis IP 31758]
gi|162353858|gb|ABX87806.1| transcription termination/antitermination factor NusG [Yersinia
pestis Angola]
gi|165913811|gb|EDR32429.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. IP275]
gi|165919670|gb|EDR37003.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165989038|gb|EDR41339.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204417|gb|EDR48897.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166957158|gb|EDR55179.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167048191|gb|EDR59599.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167054198|gb|EDR64023.1| transcription termination/antitermination factor NusG [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|169749126|gb|ACA66644.1| NusG antitermination factor [Yersinia pseudotuberculosis YPIII]
gi|186696660|gb|ACC87289.1| NusG antitermination factor [Yersinia pseudotuberculosis PB1/+]
gi|229682375|gb|EEO78465.1| transcription termination factor [Yersinia pestis Nepal516]
gi|229686981|gb|EEO79057.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695800|gb|EEO85847.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229704186|gb|EEO91197.1| transcription termination factor [Yersinia pestis Pestoides A]
gi|238701515|gb|EEP94088.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC
35236]
gi|238708982|gb|EEQ01232.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC
43380]
gi|238721280|gb|EEQ12955.1| Transcription antitermination protein nusG [Yersinia frederiksenii
ATCC 33641]
gi|238725722|gb|EEQ17279.1| Transcription antitermination protein nusG [Yersinia intermedia
ATCC 29909]
gi|262367414|gb|ACY63971.1| transcription antitermination protein NusG [Yersinia pestis
D182038]
gi|270337415|gb|EFA48192.1| transcription termination/antitermination factor NusG [Yersinia
pestis KIM D27]
gi|294355879|gb|ADE66220.1| transcription antitermination protein NusG [Yersinia pestis
Z176003]
gi|318607543|emb|CBY29041.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. palearctica Y11]
gi|320013652|gb|ADV97223.1| transcription termination factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|325664137|gb|ADZ40781.1| transcription antitermination protein NusG [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330863585|emb|CBX73697.1| transcription antitermination protein nusG [Yersinia enterocolitica
W22703]
Length = 181
Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|295677945|ref|YP_003606469.1| NusG antitermination factor [Burkholderia sp. CCGE1002]
gi|295437788|gb|ADG16958.1| NusG antitermination factor [Burkholderia sp. CCGE1002]
Length = 185
Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP
Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQEQFGQILVPTEEVVEVKGGHKSVTERRFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P
Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185
>gi|206579787|ref|YP_002241081.1| transcription termination/antitermination factor NusG [Klebsiella
pneumoniae 342]
gi|260596081|ref|YP_003208652.1| transcription antitermination protein NusG [Cronobacter turicensis
z3032]
gi|288937726|ref|YP_003441785.1| NusG antitermination factor [Klebsiella variicola At-22]
gi|290513234|ref|ZP_06552595.1| transcription termination/antitermination factor NusG [Klebsiella
sp. 1_1_55]
gi|206568845|gb|ACI10621.1| transcription termination/antitermination factor NusG [Klebsiella
pneumoniae 342]
gi|260215258|emb|CBA27161.1| Transcription antitermination protein nusG [Cronobacter turicensis
z3032]
gi|288892435|gb|ADC60753.1| NusG antitermination factor [Klebsiella variicola At-22]
gi|289774331|gb|EFD82338.1| transcription termination/antitermination factor NusG [Klebsiella
sp. 1_1_55]
Length = 181
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|220921885|ref|YP_002497186.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219946491|gb|ACL56883.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 177
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 101/177 (57%), Positives = 128/177 (72%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN E K +SI + ++ GL E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K +TD+VYH IK+TPKV GFLG P P+ D+E E I QV +RP +
Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGTERPKA 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ FEVGE V VSDGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 SISFEVGESVRVSDGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177
>gi|312170787|emb|CBX79048.1| Transcription antitermination protein nusG [Erwinia amylovora ATCC
BAA-2158]
Length = 181
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGMVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|291615763|ref|YP_003518505.1| NusG [Pantoea ananatis LMG 20103]
gi|304399298|ref|ZP_07381163.1| NusG antitermination factor [Pantoea sp. aB]
gi|291150793|gb|ADD75377.1| NusG [Pantoea ananatis LMG 20103]
gi|304353154|gb|EFM17536.1| NusG antitermination factor [Pantoea sp. aB]
gi|327396029|dbj|BAK13451.1| transcription antitermination protein NusG [Pantoea ananatis
AJ13355]
Length = 181
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180
>gi|258591304|emb|CBE67603.1| component in transcription antitermination [NC10 bacterium 'Dutch
sediment']
Length = 176
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 118/176 (67%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K ESI R + GL ++++ IP+E VV ++KG++ S R+F
Sbjct: 1 MSQSWYVIHTYSGFENKVKESIEQRAAALGLSDKISKVMIPTEDVVELKKGKRTVSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVLIKA M++++++ +K+TPKV GF+G P+PV + +++ I+ QVE +RP
Sbjct: 61 FPGYVLIKAEMSEQLWYLVKNTPKVTGFVGPATQPTPVPEEQVQTILQQVEEGAERPKHR 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F GE V V DGPFA+F G+V V EK R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 VMFLRGESVRVIDGPFANFTGLVDEVKPEKGRLKVMVSIFGRPTPVDLEFLQVEKV 176
>gi|120596977|ref|YP_961551.1| NusG antitermination factor [Shewanella sp. W3-18-1]
gi|146294853|ref|YP_001185277.1| NusG antitermination factor [Shewanella putrefaciens CN-32]
gi|120557070|gb|ABM22997.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1]
gi|145566543|gb|ABP77478.1| transcription antitermination protein nusG [Shewanella putrefaciens
CN-32]
gi|319424568|gb|ADV52642.1| NusG antitermination factor [Shewanella putrefaciens 200]
Length = 183
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++D E + I+ +++ P V
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
>gi|114704471|ref|ZP_01437379.1| transcription antitermination protein NusG [Fulvimarina pelagi
HTCC2506]
gi|114539256|gb|EAU42376.1| transcription antitermination protein NusG [Fulvimarina pelagi
HTCC2506]
Length = 176
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 100/176 (56%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL +I +P+E VV VR+GRKVN+ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTENVVEVRRGRKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TDKV+ IK+TPKV GFLG P P+TD E + I+N ++ V RP +
Sbjct: 61 FPGYVLVKAELTDKVFSMIKNTPKVTGFLGPDNRPVPITDKEADQILNHIQEGVDRPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE+V VSDGPFASFNGIV+ +D E+SR+ VEV IFGR TPV+L + QVEK+
Sbjct: 121 IMFDIGEQVRVSDGPFASFNGIVQEIDGERSRLKVEVSIFGRATPVDLEFGQVEKV 176
>gi|75675537|ref|YP_317958.1| transcription antitermination protein NusG [Nitrobacter
winogradskyi Nb-255]
gi|74420407|gb|ABA04606.1| transcription antitermination protein nusG [Nitrobacter
winogradskyi Nb-255]
Length = 176
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 99/176 (56%), Positives = 132/176 (75%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E IM+QV+ V+RP +S
Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
>gi|320540639|ref|ZP_08040289.1| transcription termination factor [Serratia symbiotica str. Tucson]
gi|320029570|gb|EFW11599.1| transcription termination factor [Serratia symbiotica str. Tucson]
Length = 181
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLYDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|261254083|ref|ZP_05946656.1| transcription antitermination protein NusG [Vibrio orientalis CIP
102891]
gi|323492149|ref|ZP_08097310.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG
20546]
gi|260937474|gb|EEX93463.1| transcription antitermination protein NusG [Vibrio orientalis CIP
102891]
gi|323313600|gb|EGA66703.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG
20546]
Length = 182
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD +KSRV V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEKL 181
>gi|294341871|emb|CAZ90300.1| Transcription antitermination protein nusG [Thiomonas sp. 3As]
Length = 189
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS EK ++ R+ R+G+ I +P+E VV ++ G K +ERRFFP
Sbjct: 15 KQWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFP 74
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K T KV GF+G P P++++++ IM+Q++ +P V
Sbjct: 75 GYVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKV 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V + +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++
Sbjct: 135 QFEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 189
>gi|237809527|ref|YP_002893967.1| NusG antitermination factor [Tolumonas auensis DSM 9187]
gi|237501788|gb|ACQ94381.1| NusG antitermination factor [Tolumonas auensis DSM 9187]
Length = 180
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ EI +P+E VV +R G+K SER+FFP
Sbjct: 6 MRWYVVQAFSGFEGRVAKSLKEHIKMHGMEDQFGEILVPTEEVVEMRAGQKRKSERKFFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D +H +++ P+V+GF+ GT + P+P+TD E + I+N+++ +V +P
Sbjct: 66 GYVLVQMIMNDASWHLVRNVPRVMGFIGGTSDRPAPITDKEADAILNRLQESVDKPKHKT 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + VSDGPFA FNG V+ VD +KSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 126 LFEPGEVIRVSDGPFADFNGTVEEVDYDKSRMKVSVLIFGRATPVELDFSQVEKV 180
>gi|114570357|ref|YP_757037.1| transcription antitermination protein nusG [Maricaulis maris MCS10]
gi|114340819|gb|ABI66099.1| transcription antitermination protein nusG [Maricaulis maris MCS10]
Length = 177
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 94/176 (53%), Positives = 126/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WYIV YSN EKK ++I S GL+ EI +P+E VV VRKGRK+N+ER++
Sbjct: 1 MSAKWYIVHAYSNFEKKVADAIRIEASIKGLEDKFEEILVPTEDVVEVRKGRKINAERKY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD+ YH + TPKV GFLG+G+ P PV+++E++ I+ Q+E +RP +
Sbjct: 61 FPGYVLVKMDMTDQAYHLVTSTPKVTGFLGSGKKPIPVSENEVKRILGQMEEDAERPRPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+GE V V DG F SFNG+V+ VD+E R+ V + IFGR TPVEL Y QVEKI
Sbjct: 121 VSYEIGETVNVIDGHFQSFNGVVEEVDDENGRLKVAINIFGRATPVELEYAQVEKI 176
>gi|270265419|ref|ZP_06193678.1| transcription antitermination protein NusG [Serratia odorifera
4Rx13]
gi|270040612|gb|EFA13717.1| transcription antitermination protein NusG [Serratia odorifera
4Rx13]
Length = 181
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|317126842|ref|YP_004093124.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522]
gi|315471790|gb|ADU28393.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522]
Length = 177
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ RL + + + +P E V+ G+ ++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRLESMDMSDKIFRVLVPVEEETEVKNGKSKQVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ +MTD ++ +++TP V GF+G+ G P+P+ E+E I+ Q+ V+ P
Sbjct: 61 FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVEGILRQM--GVEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V +GPFA+F G V+++ +K ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 KADIDFELKESVKVKEGPFANFIGTVEDIHADKQKLKVHVNMFGRETPVELDFTQVEKL 177
>gi|308188903|ref|YP_003933034.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
gi|308059413|gb|ADO11585.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
Length = 181
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180
>gi|238918138|ref|YP_002931652.1| transcription antitermination protein NusG [Edwardsiella ictaluri
93-146]
gi|238867706|gb|ACR67417.1| transcription termination/antitermination factor NusG, putative
[Edwardsiella ictaluri 93-146]
Length = 181
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQIGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|312882839|ref|ZP_07742572.1| transcription antitermination protein NusG [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309369531|gb|EFP97050.1| transcription antitermination protein NusG [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 182
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEESFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|28899701|ref|NP_799306.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
RIMD 2210633]
gi|260878169|ref|ZP_05890524.1| transcription termination/antitermination factor NusG [Vibrio
parahaemolyticus AN-5034]
gi|262392942|ref|YP_003284796.1| transcription antitermination protein NusG [Vibrio sp. Ex25]
gi|269965855|ref|ZP_06179949.1| transcription antitermination protein NusG [Vibrio alginolyticus
40B]
gi|32129809|sp|Q87KP9|NUSG_VIBPA RecName: Full=Transcription antitermination protein nusG
gi|28807953|dbj|BAC61190.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
RIMD 2210633]
gi|262336536|gb|ACY50331.1| transcription antitermination protein NusG [Vibrio sp. Ex25]
gi|269829519|gb|EEZ83759.1| transcription antitermination protein NusG [Vibrio alginolyticus
40B]
gi|308090221|gb|EFO39916.1| transcription termination/antitermination factor NusG [Vibrio
parahaemolyticus AN-5034]
gi|328471078|gb|EGF41984.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
10329]
Length = 182
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|315122750|ref|YP_004063239.1| transcription antitermination protein NusG [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|289546834|gb|ADD10127.1| transcription antitermination protein NusG [Candidatus Liberibacter
solanacearum]
gi|313496152|gb|ADR52751.1| transcription antitermination protein NusG [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 177
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 142/177 (80%), Positives = 167/177 (94%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT WYIVQVYSNCEKK VES+ GRL+R+GLD+LVTEIT+PSE+VVSVR+GRKVNSERRF
Sbjct: 1 MTSHWYIVQVYSNCEKKTVESMLGRLNRAGLDNLVTEITVPSEKVVSVRRGRKVNSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KAVMTD+VYHTI++TPKV+GFLG+G+NPSPV+DSEIEHIM Q+EA+V +PVS+
Sbjct: 61 FPGYVLLKAVMTDEVYHTIRNTPKVMGFLGSGKNPSPVSDSEIEHIMGQIEASVHKPVST 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE+GER+CVSDGPFASFNGIVK+VDEEKSR+ VEV IFGR TPVELAY+QVEKIV
Sbjct: 121 IIFEIGERICVSDGPFASFNGIVKDVDEEKSRLKVEVSIFGRATPVELAYSQVEKIV 177
>gi|308047968|ref|YP_003911534.1| transcription antitermination protein nusG [Ferrimonas balearica
DSM 9799]
gi|307630158|gb|ADN74460.1| transcription antitermination protein nusG [Ferrimonas balearica
DSM 9799]
Length = 181
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 MRWYVVQAFSGFEARVAQSLKEHIQMHGMEEFFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H +++ P+V+GF+ GT + P+P+T+ E I+N+++ A + P
Sbjct: 67 GYVLVQMVMNDQSWHLVRNVPRVMGFIGGTSDRPAPITEKEANAILNRLQEATESPRHRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 127 IFEPGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVMIFGRSTPVELDFGQVEK 180
>gi|33594732|ref|NP_882375.1| transcription antitermination protein NusG [Bordetella
parapertussis 12822]
gi|33564808|emb|CAE39750.1| transcription antitermination protein NusG [Bordetella
parapertussis]
Length = 177
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR
Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I+NQ+E V++P
Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREVEKILNQMEEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V +GP A FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176
>gi|296137526|ref|YP_003644768.1| NusG antitermination factor [Thiomonas intermedia K12]
gi|295797648|gb|ADG32438.1| NusG antitermination factor [Thiomonas intermedia K12]
Length = 187
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS EK ++ R+ R+G+ I +P+E VV ++ G K +ERRFFP
Sbjct: 13 KQWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFP 72
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K T KV GF+G P P++++++ IM+Q++ +P V
Sbjct: 73 GYVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V + +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++
Sbjct: 133 QFEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 187
>gi|260774619|ref|ZP_05883531.1| transcription antitermination protein NusG [Vibrio metschnikovii
CIP 69.14]
gi|260610413|gb|EEX35620.1| transcription antitermination protein NusG [Vibrio metschnikovii
CIP 69.14]
Length = 182
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHAMEEHFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V++GPFA FNG V+ D +KSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEVGEVVRVTEGPFADFNGTVEETDYDKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|117619084|ref|YP_858461.1| transcription termination/antitermination factor NusG [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|330831432|ref|YP_004394384.1| transcription termination/antitermination factor NusG [Aeromonas
veronii B565]
gi|117560491|gb|ABK37439.1| transcription termination/antitermination factor NusG [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|328806568|gb|AEB51767.1| transcription termination/antitermination factor NusG [Aeromonas
veronii B565]
Length = 183
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ + E+ +P+E VV +R G+K SER+FFP
Sbjct: 9 MRWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M + +H +++ P+V+GF+ GT + P+P++D E + I+N+++ A +P
Sbjct: 69 GYVLVQMIMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKT 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 129 LFEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182
>gi|95930698|ref|ZP_01313431.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684]
gi|95133178|gb|EAT14844.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684]
Length = 177
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K ++ R+ G + L E+ +PSE VV ++ G + S R+F
Sbjct: 1 MAMQWYGVHTYSGFENKVKLNLEERIKMLGAEDLFGEVLVPSEVVVELKNGERKTSTRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ + ++ +H +KDT KV GF+G G P P+ D+E+E I ++E +RP
Sbjct: 61 FPGYILVQMELNNETWHIVKDTAKVTGFVGGGTTPPPIPDAEVEKITARMEEGAERPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +EVGE V V DGPF +F GIV++V +K ++ V V IFGRVTPVEL + QVEK
Sbjct: 121 VQYEVGETVRVVDGPFLNFTGIVEDVKPDKGKLKVMVSIFGRVTPVELDFIQVEK 175
>gi|283836718|ref|ZP_06356459.1| transcription termination/antitermination factor NusG [Citrobacter
youngae ATCC 29220]
gi|291067265|gb|EFE05374.1| transcription termination/antitermination factor NusG [Citrobacter
youngae ATCC 29220]
Length = 181
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|118591199|ref|ZP_01548598.1| transcription antitermination protein NusG [Stappia aggregata IAM
12614]
gi|118436275|gb|EAV42917.1| transcription antitermination protein NusG [Stappia aggregata IAM
12614]
Length = 176
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 101/176 (57%), Positives = 129/176 (73%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK ESI + + GL L EI +P E+VV VR+GRKV++ER+F
Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MT++ +H IKDTPKV GFLG + P P+ + E I+NQV+ V RP S
Sbjct: 61 FPGYVLVKMEMTNEAFHLIKDTPKVTGFLGADQKPMPIPEKEAMRIINQVQEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176
>gi|85058107|ref|YP_453809.1| transcription antitermination protein NusG [Sodalis glossinidius
str. 'morsitans']
gi|84778627|dbj|BAE73404.1| transcription antitermination protein [Sodalis glossinidius str.
'morsitans']
Length = 181
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|307543813|ref|YP_003896292.1| transcription antitermination protein NusG [Halomonas elongata DSM
2581]
gi|307215837|emb|CBV41107.1| transcription antitermination protein NusG [Halomonas elongata DSM
2581]
Length = 177
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK + S+ R+ G++ EI +P+E VV VR G++ SER+F
Sbjct: 1 MSKRWYVVHAYSGFEKHVMRSLTERVKLYGMEDRFGEILVPTEEVVEVRDGKRRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H + +TP+V+GF+ GT E P+P+T E + I+++V+ ++P
Sbjct: 61 YPGYVLVEMEMADDTWHLVNETPRVMGFIGGTKEKPAPITQREADAILSRVKDGTEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPFA FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGQSVRVIDGPFADFNGVVEEVNYDKSRLQVSVLIFGRSTPVELEFAQVEK 176
>gi|146309859|ref|YP_001174933.1| transcription antitermination protein NusG [Enterobacter sp. 638]
gi|145316735|gb|ABP58882.1| transcription antitermination protein nusG [Enterobacter sp. 638]
Length = 181
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFAQVEK 180
>gi|148260034|ref|YP_001234161.1| transcription antitermination protein NusG [Acidiphilium cryptum
JF-5]
gi|326403010|ref|YP_004283091.1| transcription antitermination protein NusG [Acidiphilium multivorum
AIU301]
gi|146401715|gb|ABQ30242.1| transcription antitermination protein nusG [Acidiphilium cryptum
JF-5]
gi|325049871|dbj|BAJ80209.1| transcription antitermination protein NusG [Acidiphilium multivorum
AIU301]
Length = 176
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++ VYS EKK I ++ GL + ++ +P+E VV +R+ +KVN+ER+F
Sbjct: 1 MAKRWYVLHVYSGFEKKIATQIMETAAQKGLADQIEQVMVPAEEVVEIRRAQKVNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K MTD +H ++D PKV GFLGT P+P++++E + ++ QV+ + +
Sbjct: 61 FPGYVLVKMEMTDDAWHLVRDIPKVTGFLGTKLKPTPISEAEAQRMLQQVQEGTEHRRPA 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE+V V+DGPF SFNG+++++DE+K RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VVFEIGEQVRVADGPFTSFNGVIEDIDEDKGRVKVSVSIFGRSTPVELEYGQVEKL 176
>gi|158520714|ref|YP_001528584.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3]
gi|158509540|gb|ABW66507.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3]
Length = 176
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 118/176 (67%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V VYS E K +S+ R++ SG E+ +P+E+VV + KG+K S R+F
Sbjct: 1 MALKWYVVHVYSGFENKVQKSLEDRIASSGCAEKFGEVIVPTEQVVELVKGKKKESSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D+ +H + +T KV GFLG P+P+TD E + I+ ++EA +P
Sbjct: 61 YPGYILVQMELDDETWHVVANTAKVTGFLGGKNKPAPITDQEADKILERIEAGKLKPQPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V++GPFA+F+G+V+ V++EK ++ V V IFGR TPVEL + QV K+
Sbjct: 121 YSFEVGDEVRVTEGPFATFSGLVETVNQEKGKLRVLVSIFGRSTPVELDFMQVAKL 176
>gi|260770575|ref|ZP_05879507.1| transcription antitermination protein NusG [Vibrio furnissii CIP
102972]
gi|260614405|gb|EEX39592.1| transcription antitermination protein NusG [Vibrio furnissii CIP
102972]
gi|315178369|gb|ADT85283.1| transcription antiterminator [Vibrio furnissii NCTC 11218]
Length = 182
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|119502910|ref|ZP_01624995.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080]
gi|119461256|gb|EAW42346.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080]
Length = 177
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V +S EKK ++ R+ R+ + EI +P+E VV ++ G+K SER+F
Sbjct: 1 MAMRWYVVHAFSQYEKKVAVALKERIERNSMQDYFGEIIVPTEEVVEMKGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+T++E I+ +VEA V +P
Sbjct: 61 FPGYVLVQMELNDDSWHLVKETPRVLGFIGGKADKPAPITEAEASAILQRVEAGVDQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|294668287|ref|ZP_06733391.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309741|gb|EFE50984.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 177
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK +++ R+ R G+ +I +P+E VV ++ GR+ SER+F
Sbjct: 1 MSKKWYVVQAYSGFEKNVQKALKDRIEREGMGTSFGKILVPTEEVVDIKNGRRTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D +H ++ TP+V GF+G P P++ E++ I+ Q++ +P
Sbjct: 61 FPGYVLVEMEMSDDSWHLVRSTPRVSGFVGGEANRPLPISQREVDSILAQIQIGGDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVG++V V++GPFA FNGIV V+ E+S++ V V IFGR TPVEL + QVEK
Sbjct: 121 RVEFEVGQQVRVTEGPFADFNGIVSEVNYERSKLRVSVQIFGRETPVELDFGQVEK 176
>gi|254449106|ref|ZP_05062558.1| transcription termination/antitermination factor NusG [gamma
proteobacterium HTCC5015]
gi|198261298|gb|EDY85591.1| transcription termination/antitermination factor NusG [gamma
proteobacterium HTCC5015]
Length = 175
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ YS E K + R+ R GL +I +PSE VV R G+K SER+FFP
Sbjct: 1 MRWYVVQAYSGFEAKVKALLEERIERLGLSECFGDILVPSEEVVENRDGKKRRSERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +KDTPKV+GF+ G E P+P+++ E + I+++V+ +V +P V
Sbjct: 61 GYVLVQMEMDDETWHLVKDTPKVLGFIGGNKERPAPISEREAQQIIDRVQESVDKPRPKV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ VD EKSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 LFEAGESVRVIDGPFNDFNGVVEEVDFEKSRLKVSVLIFGRSTPVDLEFSQVEK 174
>gi|269137529|ref|YP_003294229.1| transcription antiterminator [Edwardsiella tarda EIB202]
gi|294634227|ref|ZP_06712772.1| transcription termination/antitermination factor NusG [Edwardsiella
tarda ATCC 23685]
gi|267983189|gb|ACY83018.1| transcription antiterminator [Edwardsiella tarda EIB202]
gi|291092352|gb|EFE24913.1| transcription termination/antitermination factor NusG [Edwardsiella
tarda ATCC 23685]
gi|304557602|gb|ADM40266.1| Transcription antitermination protein NusG [Edwardsiella tarda
FL6-60]
Length = 181
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|17547758|ref|NP_521160.1| transcription antitermination protein NusG [Ralstonia solanacearum
GMI1000]
gi|83749362|ref|ZP_00946358.1| NusG [Ralstonia solanacearum UW551]
gi|207721923|ref|YP_002252361.1| transcription antitermination protein [Ralstonia solanacearum
MolK2]
gi|207744563|ref|YP_002260955.1| transcription antitermination protein [Ralstonia solanacearum
IPO1609]
gi|17430063|emb|CAD16748.1| probable transcription antitermination protein [Ralstonia
solanacearum GMI1000]
gi|83723987|gb|EAP71169.1| NusG [Ralstonia solanacearum UW551]
gi|206587093|emb|CAQ17677.1| transcription antitermination protein [Ralstonia solanacearum
MolK2]
gi|206595969|emb|CAQ62896.1| transcription antitermination protein [Ralstonia solanacearum
IPO1609]
Length = 194
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFP
Sbjct: 20 KRWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+ GTG P+P++ E++ IM Q++ V++P
Sbjct: 80 GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKT 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|163847740|ref|YP_001635784.1| transcription termination/antitermination factor NusG [Chloroflexus
aurantiacus J-10-fl]
gi|222525603|ref|YP_002570074.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl]
gi|163669029|gb|ABY35395.1| transcription termination/antitermination factor NusG [Chloroflexus
aurantiacus J-10-fl]
gi|222449482|gb|ACM53748.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl]
Length = 187
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E K +++ R++ + + + +P+E + ++ G++ ++ +P
Sbjct: 14 RRWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ +TD ++ +++TP V F+G G P+P+ D E++ I+ Q+E + P V
Sbjct: 74 GYVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQMEG--ETPKVRVS 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++ G+ V + DGPF F GIV +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 132 YQKGQAVKIIDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 186
>gi|145297373|ref|YP_001140214.1| transcription termination/antitermination factor NusG [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142850145|gb|ABO88466.1| transcription termination/antitermination factor NusG [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 183
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ + E+ +P+E VV +R G+K SER+FFP
Sbjct: 9 MRWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M + +H +++ P+V+GF+ GT + P+P++D E + I+N+++ A +P
Sbjct: 69 GYVLVQMLMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKT 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 129 LFEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182
>gi|157368521|ref|YP_001476510.1| transcription antitermination protein NusG [Serratia proteamaculans
568]
gi|157320285|gb|ABV39382.1| NusG antitermination factor [Serratia proteamaculans 568]
Length = 181
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREYIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|325003301|ref|ZP_08124413.1| NusG antitermination factor [Pseudonocardia sp. P1]
Length = 308
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 118 WYVVHSYAGYENKVKSNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKKVQRKVLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------- 117
+L++ + D+ + +++TP V GF+G PSP+T +E+ + A ++
Sbjct: 178 ILVRMELNDQSWGAVRNTPGVTGFVGATSKPSPLTVNEVVKFLLPKTEAPKKEAEAGKPA 237
Query: 118 ------------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TP
Sbjct: 238 AAGAAATTGGSSTVEVDFEVGESVTVMDGPFATLPASISEVNIDAQKLKVLVSIFGRETP 297
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 298 VELGFNQVSKI 308
>gi|297180346|gb|ADI16563.1| transcription antiterminator [uncultured gamma proteobacterium
HF0010_01E20]
Length = 177
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+V YS EK ++ R++ S EI +P+E VV +R G+K SER+F
Sbjct: 1 MSKNWYVVHAYSGFEKNVARALQERVNLSNHQENFGEILVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ +H +K TP+V+GF+G + P+P++ E I+++V A ++
Sbjct: 61 FPGYVLVEMELNDETWHLVKKTPRVMGFIGGKADQPAPLSTKEAAAILDRVAAGSEKATP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLRVAVTIFGRSTPVELDFGQVEK 176
>gi|297180665|gb|ADI16874.1| transcription antiterminator [uncultured gamma proteobacterium
HF0010_16J05]
Length = 177
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+V YS EK ++ R+ S L EI +P+E VV +R G+K SER+F
Sbjct: 1 MSKNWYVVHAYSGFEKNVARALQERVDLSEHKDLFGEILVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P++ E I+++V A ++
Sbjct: 61 FPGYVLVEMELNDDTWHLVKETPRVMGFIGGKADQPAPLSPREAASILDRVAAGSEKATP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLQVAVTIFGRSTPVELDFGQVEK 176
>gi|116748979|ref|YP_845666.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|116698043|gb|ABK17231.1| transcription antitermination protein nusG [Syntrophobacter
fumaroxidans MPOB]
Length = 180
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 109/175 (62%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WYIV YS E K ++ R+ G L +I +P+E+V+ + KG++ S R+F+
Sbjct: 6 AKSWYIVHTYSGFEHKVKSALEERIKAEGKGSLFGQILVPTEKVIELVKGQRKASSRKFY 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+L++ + D +H ++ TPKV GF+G+ E P P++D E E I+ Q+E Q+P
Sbjct: 66 PGYILVQMELNDDTWHLVRHTPKVTGFIGSQERPIPLSDEEAETIILQMEEGAQKPRPKF 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPFASFNGIV V +K +V V V IFGR TPVEL + QV +I
Sbjct: 126 RFEKGDEVRVVDGPFASFNGIVDEVMPDKGKVRVLVSIFGRSTPVELDFVQVNRI 180
>gi|256380624|ref|YP_003104284.1| NusG antitermination factor [Actinosynnema mirum DSM 43827]
gi|255924927|gb|ACU40438.1| NusG antitermination factor [Actinosynnema mirum DSM 43827]
Length = 266
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 84 WYVVHSYAGYENKVKTNLETRIQTLDMEDYIFQVEVPTEEVTEIKNGQRKQVQRKVLPGY 143
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
+L++ + D + +++TP V GF+G PSP+T E+ + +
Sbjct: 144 ILVRMELNDGSWSAVRNTPGVTGFVGATSKPSPLTVDEVLKFLLPQGKQEPAAGKKAATT 203
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+++QV
Sbjct: 204 PVKSTVEVDFEVGESVTVMDGPFATLPATISEVNADGQKLKVLVSIFGRETPVELSFSQV 263
Query: 174 EKI 176
KI
Sbjct: 264 SKI 266
>gi|300690140|ref|YP_003751135.1| transcription termination factor [Ralstonia solanacearum PSI07]
gi|299077200|emb|CBJ49826.1| transcription termination factor [Ralstonia solanacearum PSI07]
Length = 194
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFP
Sbjct: 20 KRWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+ GTG P+P++ E++ IM Q++ V++P
Sbjct: 80 GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQKEVDKIMTQIQEGVEKPRPKT 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|237727884|ref|ZP_04558365.1| transcription antitermination protein NusG [Citrobacter sp. 30_2]
gi|226910441|gb|EEH96359.1| transcription antitermination protein NusG [Citrobacter sp. 30_2]
Length = 181
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|313667421|ref|YP_004047705.1| transcription antitermination protein [Neisseria lactamica ST-640]
gi|313004883|emb|CBN86309.1| transcription antitermination protein [Neisseria lactamica 020-06]
Length = 178
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD ++ +K TP+V GF+ GT P P++ E E I+ QV+A ++P
Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQAGAEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|163796064|ref|ZP_02190026.1| Transcription antiterminator [alpha proteobacterium BAL199]
gi|159178523|gb|EDP63063.1| Transcription antiterminator [alpha proteobacterium BAL199]
Length = 176
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V VYS EKK ++ + + G++ L+ E+ +P+E ++ VR+G KV++ER+F
Sbjct: 1 MAIRWYVVHVYSGFEKKVATAVREQAAAQGMEDLIEEVLVPTEEIIEVRRGAKVSAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K +TD+ +H + PKV GFLG P+P+T+ E I+ QV V RP S
Sbjct: 61 FPGYILVKMQLTDETWHLVTSQPKVTGFLGGKGKPTPITEGEATRIIKQVSEGVDRPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPFA+FNG V++VDEEK+R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 ITFEIGEQVRVADGPFATFNGYVEDVDEEKARLKVAVSIFGRSTPVDLEFTQVEKV 176
>gi|86739281|ref|YP_479681.1| transcription antitermination protein nusG [Frankia sp. CcI3]
gi|86566143|gb|ABD09952.1| transcription antitermination protein nusG [Frankia sp. CcI3]
Length = 277
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY
Sbjct: 104 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 163
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--EAAVQRPVSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ V + V
Sbjct: 164 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPVVPKEKKVETVRVQE 223
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 224 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 277
>gi|319791330|ref|YP_004152970.1| nusg antitermination factor [Variovorax paradoxus EPS]
gi|315593793|gb|ADU34859.1| NusG antitermination factor [Variovorax paradoxus EPS]
Length = 203
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 30 RWYVVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K T KV GF+G P+P++ E+E I++Q++ ++P V
Sbjct: 90 YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEDIVSQMQQGTEKPRHKVE 149
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V++V+ EKS+V V V+IFGR TPVEL ++QVEK
Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEDVNYEKSKVSVSVMIFGRSTPVELEFSQVEK 202
>gi|300714842|ref|YP_003739645.1| Transcription antitermination protein [Erwinia billingiae Eb661]
gi|299060678|emb|CAX57785.1| Transcription antitermination protein [Erwinia billingiae Eb661]
Length = 181
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP
Sbjct: 7 MRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMLMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|292492409|ref|YP_003527848.1| transcription termination/antitermination factor NusG
[Nitrosococcus halophilus Nc4]
gi|291581004|gb|ADE15461.1| transcription termination/antitermination factor NusG
[Nitrosococcus halophilus Nc4]
Length = 177
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E++ S+ R+ R GL +I +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSLEERIRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D+ +H ++D P+V+GF+ GT + P+P+TD+E E I+ +V ++P
Sbjct: 61 FPGYVLVQMEMSDETWHLVRDVPRVLGFIGGTSDKPAPITDAEAEKILERVREGAEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V +GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KILFEPGEMVRVVEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176
>gi|304310004|ref|YP_003809602.1| Transcription antitermination protein [gamma proteobacterium HdN1]
gi|301795737|emb|CBL43936.1| Transcription antitermination protein [gamma proteobacterium HdN1]
Length = 177
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK+ S+ R+ R GL+ E+ +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKQVKRSLEERVKRFGLEDKFGEVLVPTEEVVEIRGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M ++ ++ +K+ PKV+GF+G + P+P++D E I+ +VE V++P
Sbjct: 61 FPGYVLVQMEMDEESWYLVKECPKVMGFIGGTLDKPAPISDVEANAILRRVEDGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176
>gi|167626051|ref|YP_001676345.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4]
gi|167356073|gb|ABZ78686.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4]
Length = 183
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +++ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVIQAFSGYEGRVCKTLLEHIRMHEMEAYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182
>gi|197117311|ref|YP_002137738.1| transcription termination/antitermination factor NusG [Geobacter
bemidjiensis Bem]
gi|253701934|ref|YP_003023123.1| NusG antitermination factor [Geobacter sp. M21]
gi|197086671|gb|ACH37942.1| transcription termination/antitermination factor NusG [Geobacter
bemidjiensis Bem]
gi|251776784|gb|ACT19365.1| NusG antitermination factor [Geobacter sp. M21]
Length = 175
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ ++ EI IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D +H +K+T KV GF+G G NP P+ D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDDEVAKITKRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F+G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174
>gi|157960002|ref|YP_001500036.1| NusG antitermination factor [Shewanella pealeana ATCC 700345]
gi|157845002|gb|ABV85501.1| NusG antitermination factor [Shewanella pealeana ATCC 700345]
Length = 183
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +++ + +++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVIQAFSGYEGRVCKTLLEHIRMHEMENYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 129 MFEPGEVVRVNDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182
>gi|90417775|ref|ZP_01225687.1| transcription antitermination protein NusG [Aurantimonas
manganoxydans SI85-9A1]
gi|90337447|gb|EAS51098.1| transcription antitermination protein NusG [Aurantimonas
manganoxydans SI85-9A1]
Length = 176
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 101/175 (57%), Positives = 133/175 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK ESI + + GL +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD+V+ IK+TPKV GFLG P+P+T+ E E I+ QV+ V+RP +
Sbjct: 61 FPGYVLVKAELTDQVFSMIKNTPKVTGFLGAENRPTPITEKEAEQILAQVQDGVERPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F++GE+V VSDGPFASFNGIV+ VD+E++R+ VEV IFGR TPV+L + QVEK
Sbjct: 121 VSFDIGEQVRVSDGPFASFNGIVQEVDQERARLKVEVSIFGRATPVDLEFGQVEK 175
>gi|238765324|ref|ZP_04626250.1| Transcription antitermination protein nusG [Yersinia kristensenii
ATCC 33638]
gi|238696451|gb|EEP89242.1| Transcription antitermination protein nusG [Yersinia kristensenii
ATCC 33638]
Length = 181
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLNNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|71905949|ref|YP_283536.1| transcription antitermination protein NusG [Dechloromonas aromatica
RCB]
gi|71845570|gb|AAZ45066.1| transcription antitermination protein nusG [Dechloromonas aromatica
RCB]
Length = 177
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EK + +I R++R G++ I +P E VV ++ G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGFEKSVMRAIQERITRLGMEEKFGRILVPVEEVVEMKGGQKAISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL + M D +H +K+TPKV GF+ GT P+P+++ E+E IM Q++ V++P
Sbjct: 61 FPGYVLCEMEMDDDSWHLVKNTPKVTGFVGGTATKPTPISEKEVEKIMQQMQEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPF F+G V++V+ EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEVVRVKEGPFTDFHGSVEDVNYEKNRLRVSVTIFGRATPVELEFAQVEK 176
>gi|50119178|ref|YP_048345.1| transcription antitermination protein NusG [Pectobacterium
atrosepticum SCRI1043]
gi|227115002|ref|ZP_03828658.1| transcription antitermination protein NusG [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227328359|ref|ZP_03832383.1| transcription antitermination protein NusG [Pectobacterium
carotovorum subsp. carotovorum WPP14]
gi|253686606|ref|YP_003015796.1| NusG antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|261819561|ref|YP_003257667.1| transcription antitermination protein NusG [Pectobacterium wasabiae
WPP163]
gi|49609704|emb|CAG73137.1| transcription antitermination protein [Pectobacterium atrosepticum
SCRI1043]
gi|251753184|gb|ACT11260.1| NusG antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|261603574|gb|ACX86060.1| NusG antitermination factor [Pectobacterium wasabiae WPP163]
Length = 181
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180
>gi|121606533|ref|YP_983862.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
gi|120595502|gb|ABM38941.1| transcription antitermination protein nusG [Polaromonas
naphthalenivorans CJ2]
Length = 198
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS EK A +I R++R+G+ +P+E VV ++ G+K +ERRFFP
Sbjct: 24 MQWYVVHAYSGMEKAAERNIVERINRAGMQSKFGRFLVPTEEVVEIKNGQKKTTERRFFP 83
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H +K T KV GF+G P+P+++ E++ I++Q++ +P V
Sbjct: 84 GYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQVGTDKPRHKV 143
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG V+ V+ EK++V V V IFGR TPVEL ++Q+EK
Sbjct: 144 EFEAGEYVRVKDGPFTDFNGTVEEVNYEKNKVRVSVTIFGRATPVELEFSQIEK 197
>gi|261378971|ref|ZP_05983544.1| transcription termination/antitermination factor NusG [Neisseria
cinerea ATCC 14685]
gi|269144586|gb|EEZ71004.1| transcription termination/antitermination factor NusG [Neisseria
cinerea ATCC 14685]
Length = 178
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MAKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD ++ +K TP+V GF+ GT P P++ E E I+ QV+ ++P
Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KIEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|317494918|ref|ZP_07953328.1| transcription termination/antitermination factor NusG
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917106|gb|EFV38455.1| transcription termination/antitermination factor NusG
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 181
Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|296315359|ref|ZP_06865300.1| transcription termination/antitermination factor NusG [Neisseria
polysaccharea ATCC 43768]
gi|296837688|gb|EFH21626.1| transcription termination/antitermination factor NusG [Neisseria
polysaccharea ATCC 43768]
Length = 178
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+G P+P++ E E I+ QV+ +++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|254282245|ref|ZP_04957213.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR51-B]
gi|219678448|gb|EED34797.1| transcription termination/antitermination factor NusG [gamma
proteobacterium NOR51-B]
Length = 177
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V +S EKK ++ R+ R G+ EI +P+E VV ++ G+K SER+F
Sbjct: 1 MALRWYVVHAFSQYEKKVCLALKERIERYGMQDRFGEIIVPTEEVVEMKGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + ++ +H +K+TP+V+GF+ GT + P+P+T+ E + I+ +VEA V P
Sbjct: 61 FPGYVLVQMELDEETWHLVKETPRVLGFIGGTADQPAPITEKEAQAILQRVEAGVDAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176
>gi|209696271|ref|YP_002264201.1| transcription antitermination protein NusG [Aliivibrio salmonicida
LFI1238]
gi|208010224|emb|CAQ80555.1| transcription antitermination protein NusG [Aliivibrio salmonicida
LFI1238]
Length = 181
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVSQSLREYIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ ++ ++ P+V+GF+ GT + P+P+TD E + I+N+++ A + P
Sbjct: 67 GYVLVQMIMNDESWYLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLQQASEAPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG V+NVD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEAGEVVRVTEGPFADFNGTVENVDYEKSRIKVSVSIFGRATPVELEFSQVEK 180
>gi|157377461|ref|YP_001476061.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
gi|157319835|gb|ABV38933.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
Length = 183
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVLKTLNEYIQMHNMEHYFGEILVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ ++E V+ P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLEETVESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK
Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182
>gi|78484628|ref|YP_390553.1| NusG antitermination factor [Thiomicrospira crunogena XCL-2]
gi|78362914|gb|ABB40879.1| transcription antitermination protein nusG [Thiomicrospira
crunogena XCL-2]
Length = 177
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K + + + R+GL +I +PSE VV +R+G+K SER+F
Sbjct: 1 MAQRWYVVHAYSGYENKVKKGLSEYIERAGLQDSFGQILVPSEEVVEIREGKKRTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M + +H +K P+V+GF+ GT + P+P++ E++ I+ +VE V +P
Sbjct: 61 FPGYVLVQMEMNEDTWHLVKSVPQVMGFIGGTSDRPAPISQKEVDRILQKVEEGVDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +E GE V V DGPF F +V+ VD +K+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVIYEPGEMVRVIDGPFNDFEAVVEGVDYDKNKLQVSVLIFGRSTPVELEFTQVEK 176
>gi|111220530|ref|YP_711324.1| transcription antitermination protein nusG [Frankia alni ACN14a]
gi|111148062|emb|CAJ59729.1| Transcription antitermination protein nusG [Frankia alni ACN14a]
Length = 291
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY
Sbjct: 118 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--VSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ ++ V
Sbjct: 178 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPAAPKEKKVETVRVQE 237
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 238 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 291
>gi|269962515|ref|ZP_06176863.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3]
gi|269832710|gb|EEZ86821.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3]
Length = 182
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHAMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|156972590|ref|YP_001443497.1| transcription antitermination protein NusG [Vibrio harveyi ATCC
BAA-1116]
gi|156524184|gb|ABU69270.1| hypothetical protein VIBHAR_00230 [Vibrio harveyi ATCC BAA-1116]
Length = 182
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
>gi|16802292|ref|NP_463777.1| transcription antitermination protein NusG [Listeria monocytogenes
EGD-e]
gi|46906479|ref|YP_012868.1| transcription antitermination protein NusG [Listeria monocytogenes
str. 4b F2365]
gi|47094614|ref|ZP_00232254.1| transcription antitermination factor NusG [Listeria monocytogenes
str. 4b H7858]
gi|217965667|ref|YP_002351345.1| transcription termination/antitermination factor NusG [Listeria
monocytogenes HCC23]
gi|224498908|ref|ZP_03667257.1| transcription antitermination protein NusG [Listeria monocytogenes
Finland 1988]
gi|224502460|ref|ZP_03670767.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL R2-561]
gi|226222874|ref|YP_002756981.1| transcription antitermination factor [Listeria monocytogenes
Clip81459]
gi|254825710|ref|ZP_05230711.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-194]
gi|254828706|ref|ZP_05233393.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL N3-165]
gi|254831929|ref|ZP_05236584.1| transcription antitermination protein NusG [Listeria monocytogenes
10403S]
gi|254853487|ref|ZP_05242835.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL R2-503]
gi|254900573|ref|ZP_05260497.1| transcription antitermination protein NusG [Listeria monocytogenes
J0161]
gi|254913476|ref|ZP_05263488.1| transcription antitermination factor NusG [Listeria monocytogenes
J2818]
gi|254932465|ref|ZP_05265824.1| transcription antitermination protein NusG [Listeria monocytogenes
HPB2262]
gi|254937943|ref|ZP_05269640.1| transcription antitermination protein NusG [Listeria monocytogenes
F6900]
gi|254991754|ref|ZP_05273944.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-064]
gi|255026643|ref|ZP_05298629.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-003]
gi|255030086|ref|ZP_05302037.1| transcription antitermination protein NusG [Listeria monocytogenes
LO28]
gi|255520310|ref|ZP_05387547.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-175]
gi|284800540|ref|YP_003412405.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5578]
gi|284993726|ref|YP_003415494.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5923]
gi|290892613|ref|ZP_06555606.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-071]
gi|300764629|ref|ZP_07074621.1| transcription antitermination factor NusG [Listeria monocytogenes
FSL N1-017]
gi|315274839|ref|ZP_07869502.1| transcription termination/antitermination factor NusG [Listeria
marthii FSL S4-120]
gi|16409611|emb|CAD00773.1| transcription antitermination factor [Listeria monocytogenes EGD-e]
gi|46879743|gb|AAT03045.1| transcription antitermination factor NusG [Listeria monocytogenes
serotype 4b str. F2365]
gi|47017011|gb|EAL07904.1| transcription antitermination factor NusG [Listeria monocytogenes
str. 4b H7858]
gi|217334937|gb|ACK40731.1| transcription termination/antitermination factor NusG [Listeria
monocytogenes HCC23]
gi|225875336|emb|CAS04033.1| transcription antitermination factor [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258601111|gb|EEW14436.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL N3-165]
gi|258606859|gb|EEW19467.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL R2-503]
gi|258610552|gb|EEW23160.1| transcription antitermination protein NusG [Listeria monocytogenes
F6900]
gi|284056102|gb|ADB67043.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5578]
gi|284059193|gb|ADB70132.1| transcription antitermination protein NusG [Listeria monocytogenes
08-5923]
gi|290557922|gb|EFD91443.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J2-071]
gi|293584021|gb|EFF96053.1| transcription antitermination protein NusG [Listeria monocytogenes
HPB2262]
gi|293591484|gb|EFF99818.1| transcription antitermination factor NusG [Listeria monocytogenes
J2818]
gi|293594954|gb|EFG02715.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-194]
gi|300514736|gb|EFK41791.1| transcription antitermination factor NusG [Listeria monocytogenes
FSL N1-017]
gi|307569785|emb|CAR82964.1| transcription antitermination factor [Listeria monocytogenes L99]
gi|313611163|gb|EFR85988.1| transcription termination/antitermination factor NusG [Listeria
monocytogenes FSL F2-208]
gi|313615704|gb|EFR88994.1| transcription termination/antitermination factor NusG [Listeria
marthii FSL S4-120]
gi|328467855|gb|EGF38895.1| transcription antitermination protein NusG [Listeria monocytogenes
1816]
gi|328476087|gb|EGF46796.1| transcription antitermination protein NusG [Listeria monocytogenes
220]
Length = 177
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEK-- 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 119 RAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177
>gi|219848385|ref|YP_002462818.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485]
gi|219542644|gb|ACL24382.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485]
Length = 187
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E K +++ R++ + + + +P+E + ++ G++ ++ +P
Sbjct: 14 RRWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ +TD ++ +++TP V F+G G P+P+ D E++ I+ Q+E + P V
Sbjct: 74 GYVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQMEG--ETPKVRVS 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++ G+ V + DGPF F GIV ++D E+ RV V V FGR PVEL + QV K+V
Sbjct: 132 YQKGQAVKIIDGPFTDFEGIVDSIDHERGRVRVLVSFFGREAPVELDFLQVTKLV 186
>gi|238756065|ref|ZP_04617388.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC
29473]
gi|238705732|gb|EEP98126.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC
29473]
Length = 181
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G + SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLQDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>gi|144900868|emb|CAM77732.1| transcription antitermination protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 177
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 98/175 (56%), Positives = 126/175 (72%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY+V VYS EKK +SI + + G+ + +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3 TARWYVVHVYSGFEKKVSQSIREQAEQKGMAEMFEQILVPTEEVVEVRRGTKVNAERKFF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E IM QV+ V+RP SV
Sbjct: 63 PGYVLVKMELTDDSWHLVKNTPKVTGFLGGKGRPVPITEREAERIMQQVQEGVERPKPSV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V DGPF SFNG+V+ VDEE++R+ V V IFGR TPVEL Y QVEK+
Sbjct: 123 VFEVGEQVRVCDGPFTSFNGMVEEVDEERARLKVAVSIFGRSTPVELEYAQVEKV 177
>gi|27380527|ref|NP_772056.1| transcription antitermination protein NusG [Bradyrhizobium
japonicum USDA 110]
gi|27353691|dbj|BAC50681.1| transcription antitermination protein [Bradyrhizobium japonicum
USDA 110]
Length = 184
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 94/174 (54%), Positives = 129/174 (74%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YSN EKK ESI + + GL+ L + +P+E+V VR+GRK+++ER+FFP
Sbjct: 11 KRWYIVHAYSNFEKKVAESIREQAKQRGLEELFELVLVPTEKVTEVRRGRKIDAERKFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +SV
Sbjct: 71 GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVS 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 131 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 184
>gi|198282625|ref|YP_002218946.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666542|ref|YP_002424817.1| transcription termination/antitermination factor NusG
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247146|gb|ACH82739.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518755|gb|ACK79341.1| transcription termination/antitermination factor NusG
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 177
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V +S EKK I R +R GL EI +P E VV +R G+K +S+R F
Sbjct: 1 MSMRWYVVHAFSGFEKKVQGEIRERANREGLADKFGEILVPVEEVVEMRNGQKTSSQRMF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K TP+V GF+G P P++D+E IM++++ V++P
Sbjct: 61 YPGYVLVQMEMDDVTWHLVKSTPRVTGFVGGSVGRPHPLSDAETNAIMDRIKEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE+V V DGPF FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KFSFDAGEQVRVVDGPFKDFNGVVEEVNFEKSKLRVSVTIFGRSTPVELDFGQVEK 176
>gi|126666825|ref|ZP_01737802.1| transcription antitermination protein NusG [Marinobacter sp. ELB17]
gi|126628870|gb|EAZ99490.1| transcription antitermination protein NusG [Marinobacter sp. ELB17]
Length = 177
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK + ++ R++ +GL+ EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLKERVALNGLEEQFGEILVPTEEVVEMRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ + D +H +K+TP+V+GF+ GT E P+P+T+ E + I+ ++E+ +P
Sbjct: 61 YPGYVLVQMELEDATWHLVKNTPRVLGFIGGTKEKPAPITEKEADAILRRLESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEVVRVVEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176
>gi|322418352|ref|YP_004197575.1| NusG antitermination factor [Geobacter sp. M18]
gi|320124739|gb|ADW12299.1| NusG antitermination factor [Geobacter sp. M18]
Length = 175
Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ ++ EI IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D +H +K+T KV GF+G G NP P+ D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDEEVNKITKRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F+G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174
>gi|114561324|ref|YP_748837.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400]
gi|114332617|gb|ABI69999.1| transcription antitermination protein nusG [Shewanella
frigidimarina NCIMB 400]
Length = 183
Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++++ + ++ EI +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVIQAFSGYEGRVLKTLLEHIKMHNMEEYFGEILVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++D E + I+ +++ V+ P +
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRI 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG ++ VD EK+R+ V V+IFGR TPVEL +NQVEK
Sbjct: 129 MYEPGEVVRVCDGPFADFNGTIEEVDYEKNRIKVSVMIFGRSTPVELDFNQVEK 182
>gi|239813602|ref|YP_002942512.1| NusG antitermination factor [Variovorax paradoxus S110]
gi|239800179|gb|ACS17246.1| NusG antitermination factor [Variovorax paradoxus S110]
Length = 203
Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 30 RWYVVHAYSGMEKAVERNIIERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K T KV GF+G P+P++ E+E I++Q++ ++P V
Sbjct: 90 YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEGIVSQMQQGTEKPRHKVE 149
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EKS+V V V+IFGR TPVEL ++QVEK
Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEEVNYEKSKVSVSVMIFGRATPVELEFSQVEK 202
>gi|91791527|ref|YP_561178.1| transcription termination/antitermination factor NusG [Shewanella
denitrificans OS217]
gi|91713529|gb|ABE53455.1| transcription antitermination protein nusG [Shewanella
denitrificans OS217]
Length = 183
Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +++ + ++ EI +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVIQAFSGYEGRVSKTLLEHIKMHNMEDYFGEILVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++D E + I+ +++ V+ P +
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRI 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IYEPGEVVRVCDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFHQVEK 182
>gi|56459451|ref|YP_154732.1| transcription antiterminator NusG [Idiomarina loihiensis L2TR]
gi|56178461|gb|AAV81183.1| Transcription antiterminator NusG [Idiomarina loihiensis L2TR]
Length = 179
Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + ES+ + G++ EI +P E VV +R G + SER+FFP
Sbjct: 5 KRWYVVQAFSGYEARVSESLKEHIKMHGMEDKFGEILVPKEEVVEMRGGVRRKSERKFFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M + +H IK P+V+GF+ G+ + P+P++ E + I+++++ + +P
Sbjct: 65 GYVLVEMDMDEDAWHLIKSVPRVLGFIGGSSDRPTPISKKEADAILDRLQDSADKPKPKT 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EKSRV V V IFGR TPVEL + Q+EK
Sbjct: 125 LFEPGEVVRVNDGPFADFNGTVEEVDYEKSRVTVSVSIFGRATPVELEFGQIEK 178
>gi|319778783|ref|YP_004129696.1| Transcription antitermination protein NusG [Taylorella
equigenitalis MCE9]
gi|317108807|gb|ADU91553.1| Transcription antitermination protein NusG [Taylorella
equigenitalis MCE9]
Length = 180
Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V V+S EKK ++ R+ ++G+ I +P+E +V R ++ S+R+
Sbjct: 1 MSLRWYVVHVFSGMEKKVYAALQERIEQAGMQEYFGRILVPTEEIVETRGSKRSVSQRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+L++ +H +K T +V GFLG G PSP+ E++ ++ +E +P
Sbjct: 61 FPGYILVEMEFNPDTWHLVKSTNRVTGFLGGGSNSKPSPIPQKEVDSLLANLEEGGGKPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE + + DGPFA FNG+V V+ EK+RV V V+IFGR TPVEL ++QVEK
Sbjct: 121 PKVLFEVGETLRIKDGPFADFNGVVDQVNYEKNRVTVIVMIFGRSTPVELDFSQVEK 177
>gi|299065395|emb|CBJ36564.1| transcription termination factor [Ralstonia solanacearum CMR15]
Length = 194
Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK S+ R+ R+ L H+ I +PSE VV ++ G K +ERRFFP
Sbjct: 20 KRWYVVHAYSGMEKSVQRSLQERIDRASLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MTD+ +H +K+T KV GF+ GTG P+P++ E++ IM Q++ V++P
Sbjct: 80 GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKT 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194
>gi|91790280|ref|YP_551232.1| transcription antitermination protein nusG [Polaromonas sp. JS666]
gi|91699505|gb|ABE46334.1| transcription antitermination protein nusG [Polaromonas sp. JS666]
Length = 199
Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS EK +I R++R+G+ +P+E VV ++ G+K +ERRFFP
Sbjct: 25 MQWYVVHAYSGMEKAVERNILERINRAGMQAKFGRFLVPTEEVVEIKNGQKKTTERRFFP 84
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D+ +H +K T KV GF+G P+P+++ +++ I++Q++ ++P V
Sbjct: 85 GYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEDVQKIVSQMQVGTEKPRHKV 144
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG V+ V+ +K++V V V IFGR TPVEL ++Q+EK
Sbjct: 145 EFETGEYVRVKDGPFTDFNGTVEEVNYDKNKVRVSVTIFGRATPVELEFSQIEK 198
>gi|261854938|ref|YP_003262221.1| NusG antitermination factor [Halothiobacillus neapolitanus c2]
gi|261835407|gb|ACX95174.1| NusG antitermination factor [Halothiobacillus neapolitanus c2]
Length = 177
Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E +++ R+ R GL L EI +PSE VV +R G K SER+F
Sbjct: 1 MAMRWYVVQAFSQFENSVKKALEERIEREGLQSLFGEILVPSEEVVEMRDGVKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD+ +H + P+V+GF+G +G P+P++ E E IM +V+ + +P
Sbjct: 61 YPGYVLVQIDMTDEAWHLVNSVPRVLGFVGDSGGKPTPISSKEAEAIMTRVKDSTDKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+VGE V V DGPF F G+V+ V+ EKSR+HV V IFGR TPVEL ++QV K
Sbjct: 121 KTLFDVGEMVRVCDGPFNDFTGVVEEVNYEKSRLHVAVSIFGRSTPVELGFDQVAK 176
>gi|322834826|ref|YP_004214853.1| NusG antitermination factor [Rahnella sp. Y9602]
gi|321170027|gb|ADW75726.1| NusG antitermination factor [Rahnella sp. Y9602]
Length = 181
Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G + SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180
>gi|83648864|ref|YP_437299.1| transcription antitermination protein NusG [Hahella chejuensis KCTC
2396]
gi|83636907|gb|ABC32874.1| transcription termination/antitermination factor NusG [Hahella
chejuensis KCTC 2396]
Length = 177
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RW++VQ YS EK + S+ R+ G++ EI +P+E VV +++G+K SER+F
Sbjct: 1 MSKRWFVVQAYSGFEKHVMRSLKERIVLKGMEDQFGEILVPTEEVVEMKEGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K T +V+GF+G + P+P++D E E I+ +VE+ +P
Sbjct: 61 YPGYVLVQMEMNDDTWHLVKSTTRVLGFIGGTPDKPAPISDKEAEAILRRVESGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEAGEVVRVIDGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVDLEFSQVEK 176
>gi|261401760|ref|ZP_05987885.1| transcription termination/antitermination factor NusG [Neisseria
lactamica ATCC 23970]
gi|269208098|gb|EEZ74553.1| transcription termination/antitermination factor NusG [Neisseria
lactamica ATCC 23970]
Length = 178
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 118/177 (66%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD ++ +K TP+V GF+ GT P P++ E E I+ QV+ ++P
Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGSEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177
>gi|226939174|ref|YP_002794245.1| transcription antitermination protein NusG [Laribacter
hongkongensis HLHK9]
gi|226714098|gb|ACO73236.1| NusG [Laribacter hongkongensis HLHK9]
Length = 175
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 121/175 (69%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS EK +++ R+ R+ + HL +I +P E VV ++ G++ +ER+FFP
Sbjct: 1 MKWYVVHAYSGFEKSVQKALRERIERAEMQHLFGKILVPVEEVVDIKNGKRTLAERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K TPKV GF+ GT P+P+ SE++ IM Q++ V++P V
Sbjct: 61 GYVLVEMEMNDDTWHLVKSTPKVSGFIGGTANRPAPIKPSEVDAIMQQIQEGVEKPKPKV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG++V VSDGPFA FNG+V V+ E+SR+ V V IFGR TPVEL +NQVEK+
Sbjct: 121 LFEVGQKVRVSDGPFADFNGVVDEVNYERSRLRVSVQIFGRDTPVELEFNQVEKL 175
>gi|15676054|ref|NP_273184.1| transcription antitermination protein NusG [Neisseria meningitidis
MC58]
gi|59802177|ref|YP_208889.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
FA 1090]
gi|121634004|ref|YP_974249.1| transcription antitermination protein NusG [Neisseria meningitidis
FAM18]
gi|218767186|ref|YP_002341698.1| transcription antitermination protein NusG [Neisseria meningitidis
Z2491]
gi|239997908|ref|ZP_04717832.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
35/02]
gi|240015113|ref|ZP_04722026.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
DGI18]
gi|240017562|ref|ZP_04724102.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
FA6140]
gi|240081705|ref|ZP_04726248.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
FA19]
gi|240113981|ref|ZP_04728471.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
MS11]
gi|240116717|ref|ZP_04730779.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID18]
gi|240118939|ref|ZP_04733001.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID1]
gi|240122184|ref|ZP_04735146.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID24-1]
gi|240124477|ref|ZP_04737433.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
PID332]
gi|240124655|ref|ZP_04737541.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
SK-92-679]
gi|240129151|ref|ZP_04741812.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
SK-93-1035]
gi|254494738|ref|ZP_05107909.1| transcription antitermination protein [Neisseria gonorrhoeae 1291]
gi|254805828|ref|YP_003084049.1| putative transcription antitermination protein [Neisseria
meningitidis alpha14]
gi|260439524|ref|ZP_05793340.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
DGI2]
gi|268593758|ref|ZP_06127925.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
35/02]
gi|268597803|ref|ZP_06131970.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
FA19]
gi|268600046|ref|ZP_06134213.1| transcription antitermination protein [Neisseria gonorrhoeae MS11]
gi|268602388|ref|ZP_06136555.1| transcription antitermination protein [Neisseria gonorrhoeae PID18]
gi|268604650|ref|ZP_06138817.1| transcription antitermination protein [Neisseria gonorrhoeae PID1]
gi|268683108|ref|ZP_06149970.1| transcription antitermination protein [Neisseria gonorrhoeae
PID332]
gi|268683229|ref|ZP_06150091.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-92-679]
gi|268687535|ref|ZP_06154397.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-93-1035]
gi|291042759|ref|ZP_06568500.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
DGI2]
gi|293398220|ref|ZP_06642425.1| transcription termination/antitermination factor NusG [Neisseria
gonorrhoeae F62]
gi|304388927|ref|ZP_07370974.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis ATCC 13091]
gi|54037929|sp|P65592|NUSG_NEIMB RecName: Full=Transcription antitermination protein nusG
gi|54041679|sp|P65591|NUSG_NEIMA RecName: Full=Transcription antitermination protein nusG
gi|7225343|gb|AAF40585.1| transcription antitermination protein NusG [Neisseria meningitidis
MC58]
gi|59719072|gb|AAW90477.1| putative transcription antitermination protein [Neisseria
gonorrhoeae FA 1090]
gi|120865710|emb|CAM09437.1| transcription antitermination protein [Neisseria meningitidis
FAM18]
gi|121051194|emb|CAM07465.1| transcription antitermination protein [Neisseria meningitidis
Z2491]
gi|226513778|gb|EEH63123.1| transcription antitermination protein [Neisseria gonorrhoeae 1291]
gi|254669370|emb|CBA08487.1| putative transcription antitermination protein [Neisseria
meningitidis alpha14]
gi|261391664|emb|CAX49112.1| transcription antitermination protein NusG [Neisseria meningitidis
8013]
gi|268547147|gb|EEZ42565.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
35/02]
gi|268551591|gb|EEZ46610.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
FA19]
gi|268584177|gb|EEZ48853.1| transcription antitermination protein [Neisseria gonorrhoeae MS11]
gi|268586519|gb|EEZ51195.1| transcription antitermination protein [Neisseria gonorrhoeae PID18]
gi|268588781|gb|EEZ53457.1| transcription antitermination protein [Neisseria gonorrhoeae PID1]
gi|268623392|gb|EEZ55792.1| transcription antitermination protein [Neisseria gonorrhoeae
PID332]
gi|268623513|gb|EEZ55913.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-92-679]
gi|268627819|gb|EEZ60219.1| transcription antitermination protein [Neisseria gonorrhoeae
SK-93-1035]
gi|291013193|gb|EFE05159.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
DGI2]
gi|291611483|gb|EFF40553.1| transcription termination/antitermination factor NusG [Neisseria
gonorrhoeae F62]
gi|304337061|gb|EFM03248.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis ATCC 13091]
gi|308388344|gb|ADO30664.1| transcription antitermination protein [Neisseria meningitidis
alpha710]
gi|319411391|emb|CBY91802.1| transcription antitermination protein NusG [Neisseria meningitidis
WUE 2594]
gi|325127120|gb|EGC50074.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis N1568]
gi|325133040|gb|EGC55712.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M6190]
gi|325135132|gb|EGC57758.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M13399]
gi|325137185|gb|EGC59780.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M0579]
gi|325139019|gb|EGC61565.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis ES14902]
gi|325141141|gb|EGC63641.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis CU385]
gi|325145324|gb|EGC67601.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M01-240013]
gi|325197415|gb|ADY92871.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis G2136]
gi|325199340|gb|ADY94795.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis H44/76]
gi|325203039|gb|ADY98493.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M01-240149]
gi|325205219|gb|ADZ00672.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M04-240196]
gi|325207162|gb|ADZ02614.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis NZ-05/33]
Length = 178
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK + R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+G P+P++ E E I+ QV+ +++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177
>gi|84494813|ref|ZP_00993932.1| transcription antitermination protein NusG [Janibacter sp.
HTCC2649]
gi|84384306|gb|EAQ00186.1| transcription antitermination protein NusG [Janibacter sp.
HTCC2649]
Length = 316
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E V ++ G++ R PGY
Sbjct: 128 WYVIHSYAGYENRVKTNLETRIQSLNMEDFIFEIEVPMEEVTEIKGGQRKLVRRVRMPGY 187
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111
V+++ +TD+ + ++ TP V GF+G P P++ E+ ++ E
Sbjct: 188 VIVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSLDEVYTMIKPAELELAAAAAAGGGS 247
Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
A V FEVGE V V DGPF + + ++ E ++ V V IFGR TPVE
Sbjct: 248 TGSGAGSASQAPLVEFEVGESVTVMDGPFETLPATISEINAEGQKLKVLVSIFGRETPVE 307
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 308 LSFSQVSKL 316
>gi|269837636|ref|YP_003319864.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745]
gi|269786899|gb|ACZ39042.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745]
Length = 200
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +++ R+ + + E+ +P++ V +R G++ + +R+ FPG
Sbjct: 29 QWYVVHTYSGYENKVRQNLLHRIETMDMADKIFEVVVPTQEEVEIRSGQRHSVQRKVFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ +M D ++ +++TP V GF+G G P+P+ + E++ IM +EA + P V
Sbjct: 89 YVLVRMIMDDDSWYVVRNTPGVTGFVGMGNKPTPLGEDEVQAIMRGMEA--EAPRVKVSL 146
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ V + DGPF+ F G V +D+EK +V V V FGR TPV L + QVE+
Sbjct: 147 AVGDVVRIIDGPFSDFRGTVDEIDQEKGKVRVLVSFFGRETPVTLDFLQVER 198
>gi|307823429|ref|ZP_07653658.1| NusG antitermination factor [Methylobacter tundripaludum SV96]
gi|307735414|gb|EFO06262.1| NusG antitermination factor [Methylobacter tundripaludum SV96]
Length = 177
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YSN E K +++ R+ R GL+ +I +P+E VV +R G++ SER+F
Sbjct: 1 MALRWYVVHAYSNFENKVKQALEERIKREGLEQYFGKILVPTEEVVEMRMGQQRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ +TD+ +H +KD P+V+GF+ GT + P+P+++ E I+N+VE V +P
Sbjct: 61 FPGYVLVQMDLTDETWHLVKDVPRVLGFIGGTSDRPAPISEKEAMAILNRVEDGVNKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPF FNG+V+ V+ EKS++ + V+IFGR T VEL + QVEK
Sbjct: 121 KTMFEAGEVIRVIDGPFKDFNGVVEEVNYEKSKIKISVLIFGRSTSVELGFGQVEK 176
>gi|332040082|gb|EGI76467.1| NusG antitermination factor [Hylemonella gracilis ATCC 19624]
Length = 195
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R++R+GL I +P E VV V+ G+K +ER+FFPG
Sbjct: 21 RWYVVHAYSGMEKAVERNILERINRAGLQGKFGRILVPMEEVVEVKNGQKRTTERKFFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YVL++ VM D+ +H +K T KV GF+G G P+P+++ E+ I+NQ++ +P V
Sbjct: 81 YVLVEMVMDDESWHLVKHTSKVTGFVGGGKNNRPTPISEEEVMKIVNQMQEGSDKPRHKV 140
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 141 EFTVGELVRVKEGPFTDFNGAVEEVNYEKSKVRVAVTIFGRSTPVELEFGQVEK 194
>gi|296447965|ref|ZP_06889872.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
gi|296254532|gb|EFH01652.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
Length = 176
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI ++ L EI +P+E+VV VR+GRKV+SER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREGAAQRSLSDKFEEILVPTEQVVEVRRGRKVSSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K ++D V+ IK+TPKV GFLG P P++++E I QV V+RP +
Sbjct: 61 FPGYVLVKCDLSDAVFSLIKNTPKVTGFLGADNKPMPISEAEALRIKGQVAEGVERPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V V+DGPFASFNG+V+ VD+ +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 ISFEVGETVRVADGPFASFNGVVEEVDDARSRLKVAVSIFGRPTPVELEFGQVEKV 176
>gi|78043442|ref|YP_361133.1| transcription termination/antitermination factor NusG
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995557|gb|ABB14456.1| transcription termination/antitermination factor NusG
[Carboxydothermus hydrogenoformans Z-2901]
Length = 173
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + I +P E + ++ G+K S+R+
Sbjct: 1 MEKNWYVVHTYSGHENKVKANLEKRIESLNMGNHIFRILVPMEDELEIKDGKKKVSKRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++TD+ Y+ ++ TP V GF+G G P P+T E+ IM Q+ + P +
Sbjct: 61 FPGYVLVEMILTDESYNVVRHTPGVTGFVG-GSKPIPLTAQEVRQIMKQM--GIDEPRTK 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+G+ V V+ GPF F G V+ + +K +V V V +FGR TP+EL ++QV KI
Sbjct: 118 IDLEIGQPVRVNAGPFEGFVGNVEEIYPDKGKVKVLVSMFGRETPIELDFSQVTKI 173
>gi|302382912|ref|YP_003818735.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC
15264]
gi|302193540|gb|ADL01112.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC
15264]
Length = 193
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 93/175 (53%), Positives = 125/175 (71%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK + I + + L+ +EI +P+E VV +R+GRKVNSER+FFP
Sbjct: 16 HKWYIVHAYSNFEKKVAQHIRDQAKQRDLEECFSEILVPTEDVVEIRRGRKVNSERKFFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYVL+K +TD YH +KDTPKV GFLG G P PV++ E++ I+ VE V+RP +
Sbjct: 76 GYVLVKMELTDDAYHLVKDTPKVTGFLGAAGGTKPLPVSEREVQAIIGAVEEGVERPKPT 135
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++GE V V DGPFASF+G V++VDE+ +R+ V V IFGR TPV+L Y+QVEK
Sbjct: 136 IRFDIGETVKVIDGPFASFDGQVESVDEDAARLRVAVSIFGRPTPVDLEYSQVEK 190
>gi|237747354|ref|ZP_04577834.1| transcription antiterminator [Oxalobacter formigenes HOxBLS]
gi|229378705|gb|EEO28796.1| transcription antiterminator [Oxalobacter formigenes HOxBLS]
Length = 195
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V VYS EK S+ R+ R G+ +I +P+E VV V+ G+K +ERRFFP
Sbjct: 21 MRWYVVHVYSGMEKSVRRSLLERIDRMGMADKFGQILVPTEEVVEVKSGQKSVTERRFFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ MTD +H +KDT KV GF+G P+PV E++ ++ Q++ V +P +
Sbjct: 81 GYVLIEMEMTDDTWHLVKDTGKVTGFVGGKSNKPTPVPAREMDKLLQQMQEGVDKPRPKI 140
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 SYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195
>gi|296533970|ref|ZP_06896488.1| transcription termination/antitermination factor NusG [Roseomonas
cervicalis ATCC 49957]
gi|296265701|gb|EFH11808.1| transcription termination/antitermination factor NusG [Roseomonas
cervicalis ATCC 49957]
Length = 178
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V VYS EKK + + + ++ GL + +I +PSE V VR+G+K+NSER+FFP
Sbjct: 4 MKWYVVHVYSGFEKKIAQQLKEQAAQKGLADQIGDILVPSEEVTEVRRGQKINSERKFFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121
GYVL+K MTD+ +H +KDTPKV GFLG PSP++++E + I+ QV+ V +P +V
Sbjct: 64 GYVLVKMAMTDEAWHLVKDTPKVTGFLGARNRPSPISEAEAQRIVRQVQEGVDKPKRPAV 123
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNG ++ VDEE+ RV V V IFGR TPVEL Y QVEK+
Sbjct: 124 VFEVGEQVRVADGPFTSFNGTIEEVDEERGRVKVSVSIFGRATPVELEYAQVEKV 178
>gi|134103300|ref|YP_001108961.1| putative transcription antitermination regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291004481|ref|ZP_06562454.1| putative transcription antitermination regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133915923|emb|CAM06036.1| putative transcription antitermination regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 283
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 98 WYVVHSYAGYENKVKTNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKLVQRKVLPGY 157
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV------ 118
+L++ + D + +++TP V GF+G +PSP++ ++ + +P
Sbjct: 158 ILVRMELNDASWSAVRNTPGVTGFIGATSHPSPLSIDDVLKFLAPRAEKEAKPEAGKKAA 217
Query: 119 --------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
V FEVGE + V DGPFA+ + V+ + ++ V V IFGR TPVEL++
Sbjct: 218 APAAAKPSVEVDFEVGESITVMDGPFATLPATISEVNADAQKLKVLVSIFGRETPVELSF 277
Query: 171 NQVEKI 176
NQV KI
Sbjct: 278 NQVSKI 283
>gi|325203246|gb|ADY98699.1| transcription termination/antitermination factor NusG [Neisseria
meningitidis M01-240355]
Length = 178
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK + R++R + +I +P E+VV +R GRK SER+
Sbjct: 1 MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V GF+G P+P++ E E I+ QV+ +++P
Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQKEAEIILQQVQTGIEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177
>gi|30249991|ref|NP_842061.1| transcription antitermination protein NusG [Nitrosomonas europaea
ATCC 19718]
gi|30139098|emb|CAD85962.1| nusG; Bacterial transcription antitermination [Nitrosomonas
europaea ATCC 19718]
Length = 177
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS EK ++ R+++ L+ EI IP E V+ ++ G+K SER+F
Sbjct: 1 MSKKWYAVHTYSGFEKSVKRALKDRIAQHKLEDKFGEILIPVEEVIEIKGGQKSISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+LI+ MTD+ +H +K TPKV GF+G P P++ EIE I NQV V++P
Sbjct: 61 FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSTQPVPISHKEIESIFNQVREGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE GE V + +GPF F+G V+ V+ +KS++ V V IFGR TPVEL ++QV+K+
Sbjct: 121 KVIFEAGEAVRIKEGPFTDFHGNVEEVNYDKSKLQVSVSIFGRPTPVELDFHQVDKV 177
>gi|255019485|ref|ZP_05291581.1| Transcription antitermination protein NusG [Acidithiobacillus
caldus ATCC 51756]
gi|254971080|gb|EET28546.1| Transcription antitermination protein NusG [Acidithiobacillus
caldus ATCC 51756]
Length = 175
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V +S+ EKK I R R GL+ EI +P E VV +R G+K +S+R F+P
Sbjct: 1 MRWYVVHAFSSFEKKVQAEIRERAKREGLEDQFGEILVPVEEVVEMRNGQKTSSQRMFYP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K TP+V GF+G P P++++E I+++++ V++P
Sbjct: 61 GYVLVQMEMNDQTWHLVKHTPRVTGFVGGSVGKPHPLSEAEANAILDRIKEGVEKPRPKF 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ GE+V V DGPF FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEKI
Sbjct: 121 SFDAGEQVRVIDGPFKDFNGVVEEVNYEKSKLRVSVTIFGRSTPVELDFGQVEKI 175
>gi|317125904|ref|YP_004100016.1| transcription antitermination protein nusG [Intrasporangium calvum
DSM 43043]
gi|315589992|gb|ADU49289.1| transcription antitermination protein nusG [Intrasporangium calvum
DSM 43043]
Length = 292
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 12/184 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V Y+ E + ++ R+ ++ + EI +P E V ++ G+K R PGY
Sbjct: 109 WFVVHSYAGYENRVKANLETRIQTLNMEDYIFEIEVPMEEVTEIKNGQKKLVRRVRMPGY 168
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +TD+ + ++ TP V GF+G P P++ E+ ++
Sbjct: 169 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSIDEVFTMLAPNLEVPTEGGSGAGRS 228
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A ++P + V FEVGE V V +GPF + + ++ + ++ V V IFGR TPVEL++ Q
Sbjct: 229 AAKKPAAVVDFEVGESVTVMEGPFETLPATISEINSDTQKLKVLVSIFGRETPVELSFGQ 288
Query: 173 VEKI 176
V KI
Sbjct: 289 VAKI 292
>gi|302877789|ref|YP_003846353.1| NusG antitermination factor [Gallionella capsiferriformans ES-2]
gi|302580578|gb|ADL54589.1| NusG antitermination factor [Gallionella capsiferriformans ES-2]
Length = 177
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS EK ++ R++R G+ +I +P E VV ++ G+KV SER+F
Sbjct: 1 MAMSWYVVHTYSQFEKSVSRALVERIAREGMQEKFGQILVPVEEVVELKGGQKVTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MTD+ +H +K+TPKV GFLG P+P+++ E+++IM Q++A V++P
Sbjct: 61 FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMRPTPISEKEVQNIMQQMQAGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V +GPF F G+V+ V+ +K+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGESVRVKEGPFTDFTGMVEEVNYDKNKIRVAVTIFGRATPVELDFGQVEK 176
>gi|119773342|ref|YP_926082.1| transcription antitermination protein NusG [Shewanella amazonensis
SB2B]
gi|119765842|gb|ABL98412.1| transcription antitermination protein nusG [Shewanella amazonensis
SB2B]
Length = 183
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVAKSLVEHIKMHGMEQYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P+TD E + I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPITDREADAILRRLQETTESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK
Sbjct: 129 MYEPGEVVRVVDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182
>gi|88812769|ref|ZP_01128015.1| transcription antitermination protein NusG [Nitrococcus mobilis
Nb-231]
gi|88790007|gb|EAR21128.1| transcription antitermination protein NusG [Nitrococcus mobilis
Nb-231]
Length = 177
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E + S+ R+ R G++ EI +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFENQVKRSLEERIKREGVESKFGEILVPTEEVVEMREGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ MT++ +H ++D P+V+ F+ GT + P+P++D+E E I+N+V +RP
Sbjct: 61 FPGYVLVQMEMTEETWHLVRDVPRVMAFIGGTSDRPAPISDAEAEQILNRVREGAERPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEVVRVVSGPFTDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 176
>gi|241765523|ref|ZP_04763485.1| NusG antitermination factor [Acidovorax delafieldii 2AN]
gi|241364680|gb|EER59705.1| NusG antitermination factor [Acidovorax delafieldii 2AN]
Length = 197
Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RSG+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 24 RWYIVHAYSGMEKAVERNILERIARSGMQTKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P V
Sbjct: 84 YVFVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQEGTDKPRHKVE 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196
>gi|152998283|ref|YP_001343118.1| NusG antitermination factor [Marinomonas sp. MWYL1]
gi|150839207|gb|ABR73183.1| NusG antitermination factor [Marinomonas sp. MWYL1]
Length = 177
Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY+VQ YS EK + S+ R+ G + +I +P+E VV +R G+K SER+F
Sbjct: 1 MTKRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K T +V+GF+ GT + PSP+T E + I+ +V V +P
Sbjct: 61 YPGYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V V++GPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176
>gi|260222522|emb|CBA32169.1| Transcription antitermination protein nusG [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 188
Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK +I R+ R+G+ I +P E VV V+ G+K +ER+FFPG
Sbjct: 15 RWYVVHAYSGMEKAVERNILERIQRAGMQSKFGRILVPMEEVVEVKNGQKKTTERKFFPG 74
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H +K T KV GF+G P+P++++E+ I+NQ++ +P +
Sbjct: 75 YVLVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEAEVMKIVNQMQEGTDKPRHKIE 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK
Sbjct: 135 FVVGEFVRVKEGPFTDFNGSVEDVNYEKSKVRVSVTIFGRSTPVELEFSQIEK 187
>gi|119478595|ref|ZP_01618517.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2143]
gi|119448430|gb|EAW29680.1| transcription antitermination protein NusG [marine gamma
proteobacterium HTCC2143]
Length = 176
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+V YS EKK + R+ + ++ +P+E VV +R G+K SER+F
Sbjct: 1 MSKRWYVVHAYSGYEKKVANMLKERIELHKMQEKFGDVLVPTEEVVEMRGGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D +H +K+TP+V+GF+G + P+P+T++E I+ +VE+ + P
Sbjct: 61 FPGYVLVEMELGDDTWHLVKETPRVLGFIGGKADKPAPITEAEANTILQRVESG-EAPKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF FNG+V+ V+ EKS++HV V+IFGR TPVEL + QVEK
Sbjct: 120 KTLFEPGEMVRVVDGPFNDFNGVVEEVNYEKSKLHVAVLIFGRSTPVELDFGQVEK 175
>gi|295401934|ref|ZP_06811897.1| NusG antitermination factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|312109247|ref|YP_003987563.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1]
gi|294976064|gb|EFG51679.1| NusG antitermination factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|311214348|gb|ADP72952.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1]
Length = 177
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G+ + I +P E + G+K ++R+
Sbjct: 1 MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETETKSGKKKAAKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E+E I+ ++ +Q
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRM--GMQLA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE ++Q+EKI
Sbjct: 119 ELDVDYELKETVRVKEGPFANFTGTIEEIDVDKRKVKVLVNMFGRETPVEFEFSQIEKI 177
>gi|171462866|ref|YP_001796979.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192404|gb|ACB43365.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 190
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 87/174 (50%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS EK + R++RSG+ I +PSE VV ++ G K SERRFFP
Sbjct: 16 MRWYVIHAYSGMEKSVKRDLEERIARSGMPEKFGRILVPSEEVVEIKSGTKSVSERRFFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ MTD+ +H +K+TPKV GF+G PSP++ +E+ IM+Q++A V +P
Sbjct: 76 GYVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVTKIMDQMQAGVDKPKPKT 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 136 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEK 189
>gi|148263129|ref|YP_001229835.1| NusG antitermination factor [Geobacter uraniireducens Rf4]
gi|146396629|gb|ABQ25262.1| transcription antitermination protein nusG [Geobacter
uraniireducens Rf4]
Length = 175
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ GL+ EI IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLSERIKNLGLEDKFGEILIPCETVVELKKGEKRTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELDDETWHVVKETSKVTGFVG-GNNPFAIPDDEVAKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|297172380|gb|ADI23355.1| transcription antiterminator [uncultured Oceanospirillales
bacterium HF0770_27O18]
gi|297181153|gb|ADI17350.1| transcription antiterminator [uncultured Oceanospirillales
bacterium HF0070_21F08]
Length = 180
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 86/179 (48%), Positives = 118/179 (65%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK S+ R+ + ++ L EI +P+E VV +R G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKHVKRSLEERIKLNSMEELFGEILVPTEEVVEMRAGQKRRSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG----ENPSPVTDSEIEHIMNQVEAAVQR 116
FPGYVL+ M D +H +K+TPKV+GF+G SP+T E + I+ +++ AV++
Sbjct: 61 FPGYVLVHMEMNDDSWHMVKETPKVMGFIGEDPKNPGRVSPITQKEADAILRRMDDAVEK 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P FE GE V V+DGPFA FNG+V+ V+ EKSR+HV V+IFGR TPVEL + QVEK
Sbjct: 121 PKPKTLFEAGEVVRVTDGPFADFNGVVEEVNYEKSRLHVAVLIFGRSTPVELEFGQVEK 179
>gi|226309792|ref|YP_002769686.1| transcription antitermination protein [Brevibacillus brevis NBRC
100599]
gi|226092740|dbj|BAH41182.1| transcription antitermination protein [Brevibacillus brevis NBRC
100599]
Length = 178
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ RL G++ + + +P+E V + G+K ++
Sbjct: 1 MEKAWYVLHTYSGYENKVKTNLEKRLESMGMEDKIFRVLVPTEEEVETKDGKKRTVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+ + E + I+ Q+ ++ P
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALRPEEADTILKQM--GIEIP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F + + V V+DGPF++ G + + ++ +V V V IFGR TPVEL + QV+++
Sbjct: 119 KIRVDFALRDMVRVTDGPFSNRTGEIIEIYPDRQKVRVLVDIFGRETPVELDFTQVQQL 177
>gi|315499731|ref|YP_004088534.1| nusg antitermination factor [Asticcacaulis excentricus CB 48]
gi|315417743|gb|ADU14383.1| NusG antitermination factor [Asticcacaulis excentricus CB 48]
Length = 189
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 90/175 (51%), Positives = 129/175 (73%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK ES+ + GL+ +EI +P+E VV VR+GRK NSER+FFP
Sbjct: 15 HKWYIVHAYSNFEKKVAESLREQAKAQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFP 74
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +TD+ +H +K+TPKV GFLG+G P PV++ E++ I+ VE A ++P + +
Sbjct: 75 GYVLVKMELTDEAFHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVEVAAEKPKTVLS 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F++GE++ V DGPFASF+G+V++VD++ +R+ V V IFGR TPV+L + QVEK V
Sbjct: 135 FDIGEKIKVIDGPFASFDGVVESVDQDHARLKVSVSIFGRATPVDLEFGQVEKTV 189
>gi|253998002|ref|YP_003050065.1| NusG antitermination factor [Methylovorus sp. SIP3-4]
gi|313200070|ref|YP_004038728.1| nusg antitermination factor [Methylovorus sp. MP688]
gi|253984681|gb|ACT49538.1| NusG antitermination factor [Methylovorus sp. SIP3-4]
gi|312439386|gb|ADQ83492.1| NusG antitermination factor [Methylovorus sp. MP688]
Length = 178
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY VQ +S EK + R++RS L + +I +P E V+ ++ G+K SER+
Sbjct: 1 MSMRWYAVQAFSGFEKSVQRGLEERIARSDLQDMFGQILVPVEEVIEMKNGQKAISERKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H +K TP+V F+G P+P+ D E+E I+ +++ + P
Sbjct: 61 YPGYVLVQMQMNDDTWHLVKSTPRVTAFIGGTALKPTPIKDKEVEIILQRMDESKSNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V DGPF F+G V++++ EKS++ V VVIFGR TPVEL ++QVEK
Sbjct: 121 KLTFEKGESVRVIDGPFKDFSGNVEDINYEKSKLRVSVVIFGRATPVELDFDQVEK 176
>gi|256371203|ref|YP_003109027.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
gi|256007787|gb|ACU53354.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
Length = 243
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E + +++ R+ GL+ + E+ IP E V ++ GR+V +R+ FPGY
Sbjct: 68 WYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPGY 127
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----VSS 120
VL++A M D+V+ I++TP + F+G+G P P++ E+E + + RP S+
Sbjct: 128 VLVRAEMDDEVWSAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEELRPQPQRRST 187
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE+GE V V +GP A F G V V+ ++ ++ V IFGR TPVEL + QV K
Sbjct: 188 QEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSK 242
>gi|15603609|ref|NP_246683.1| transcription antitermination protein NusG [Pasteurella multocida
subsp. multocida str. Pm70]
gi|18202810|sp|Q9CK84|NUSG_PASMU RecName: Full=Transcription antitermination protein nusG
gi|12722159|gb|AAK03828.1| NusG [Pasteurella multocida subsp. multocida str. Pm70]
Length = 183
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H ++ P+V+GF+ GT + P+P++ E + I+N+++ + ++P
Sbjct: 68 GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181
>gi|312200033|ref|YP_004020094.1| NusG antitermination factor [Frankia sp. EuI1c]
gi|311231369|gb|ADP84224.1| NusG antitermination factor [Frankia sp. EuI1c]
Length = 261
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+S ++ + +I +P E V V+ G++ ++ +PGY
Sbjct: 88 WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPLEEVPVVKNGKRQMVTQKKYPGY 147
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRPVSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ + V
Sbjct: 148 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRREEVFSILVPPAKKEKKVETVKVQE 207
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 208 FDVGESVTVMDGPFATLPATISEINVDAQRLKVLVSIFGRETPVELQFNQVAKI 261
>gi|264676489|ref|YP_003276395.1| NusG antitermination factor [Comamonas testosteroni CNB-2]
gi|299531364|ref|ZP_07044774.1| transcription termination/antitermination factor NusG [Comamonas
testosteroni S44]
gi|262207001|gb|ACY31099.1| NusG antitermination factor [Comamonas testosteroni CNB-2]
gi|298720771|gb|EFI61718.1| transcription termination/antitermination factor NusG [Comamonas
testosteroni S44]
Length = 195
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RS + I +PSE VV +R G + +ERR FPG
Sbjct: 22 RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E+ I++Q++ ++P V
Sbjct: 82 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194
>gi|323703915|ref|ZP_08115547.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574]
gi|323531131|gb|EGB21038.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574]
Length = 175
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++
Sbjct: 1 MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ + E + I+ Q+ ++ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGTKPIPLNEDEAKAIIKQM--GMEEPRTR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + +GE V V+DGPF +F G+++ + +K +V V V +FGR TP+EL + Q+EK+
Sbjct: 119 VDYSLGENVRVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKM 174
>gi|108758111|ref|YP_631275.1| transcription termination/antitermination factor NusG [Myxococcus
xanthus DK 1622]
gi|108461991|gb|ABF87176.1| transcription termination/antitermination factor NusG [Myxococcus
xanthus DK 1622]
Length = 180
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YSN E +A +S+ ++ GL EI IP E+VV + KG K S R+F
Sbjct: 1 MAMKWYVVHTYSNFENQAKKSLEEKVRLEGLQDQFGEILIPMEQVVEMVKGEKKTSRRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPV 118
FPGY+ ++ + D+ H +K+TPK+ GF GT +NP P++D E+ + +Q+ +P
Sbjct: 61 FPGYIFVQMELNDRTLHLVKNTPKITGFPGTVQNQNPLPISDQEVARLTSQISEGTLKPK 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F+ G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK
Sbjct: 121 PKVQFDDGDTVRVIDGPFANFNGTVEEVNAEKGRVKVLVSIFGRATPVELDFMQVEK 177
>gi|139438532|ref|ZP_01772048.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC
25986]
gi|133776071|gb|EBA39891.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC
25986]
Length = 178
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ RWY+V YS E + + R+ G+ + +I IP ERV +++G ++ + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIEIPMERVTEIKEGGKRETKDSK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E + + +
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGNGKPAPLSRDEYNKMTRRPGKGDSPKRT 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
SV +VG V V+DGP F+G V V+ E ++ V ++IFGR TPVEL +NQV
Sbjct: 121 SVDIQVGTSVRVTDGPLTDFDGKVSEVNTEAGKLKVTLMIFGRETPVELDFNQV 174
>gi|300782525|ref|YP_003762816.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32]
gi|299792039|gb|ADJ42414.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32]
Length = 288
Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R ++ + +I +P+E V ++ G++ +R+ PGY
Sbjct: 100 WYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
+L++ + D + +++TP V GF+G PSP+T E+ + +
Sbjct: 160 ILVRMDLNDASWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPKVESEAPAKSGKGES 219
Query: 117 ---------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
P V FE+GE V V DGPFA+ + V+ + ++ V V IFGR TPVE
Sbjct: 220 TATAAPLGGPAVEVDFEIGESVTVMDGPFATLPATISEVNIDGQKLKVLVSIFGRETPVE 279
Query: 168 LAYNQVEKI 176
L++NQV KI
Sbjct: 280 LSFNQVSKI 288
>gi|253995706|ref|YP_003047770.1| NusG antitermination factor [Methylotenera mobilis JLW8]
gi|253982385|gb|ACT47243.1| NusG antitermination factor [Methylotenera mobilis JLW8]
Length = 178
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY VQ +S EK + + R+ RSGL +I +P E V+ ++ G+K SER+
Sbjct: 1 MSMKWYAVQAFSGFEKSVQKGLEERVVRSGLQDQFGQILVPIEEVIEMKAGQKTISERKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD +H +K TP+V F+ G+ + P+P+ D E++ I+ +++ + P
Sbjct: 61 YPGYVLVQMNMTDDTWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V ++DGPF F+G V+ ++ EKS++ V VVIFGR TPVEL ++QVEK
Sbjct: 121 KLTFEKGESVRITDGPFKDFSGNVEEINYEKSKLRVSVVIFGRSTPVELEFSQVEK 176
>gi|322381140|ref|ZP_08055143.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154716|gb|EFX46987.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
Length = 180
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ + + + +P E + + G+K R+
Sbjct: 4 MEKRWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPMEEELVNKDGKKKTVMRKV 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ + TD ++ +++TP V GF+ G+G P+P+ E++ I+ + ++ P
Sbjct: 64 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHM--GIEEP 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F + E V V GPFA+F G V+ + EKS++ V V +FGR TP+EL ++QVEK+
Sbjct: 122 KPKIDFNLKETVRVKVGPFANFVGTVEEIIPEKSKLKVHVNMFGRETPLELDFDQVEKL 180
>gi|330432328|gb|AEC17387.1| transcription antitermination protein NusG [Gallibacterium anatis
UMN179]
Length = 183
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + + + ++ L E+ +P+E VV G++ SER+FFP
Sbjct: 8 KRWYVLQAFSGFESRVATVLREYIKLHNMEELFGEVLVPTEEVVENVGGKRRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+G ++P+P+++ E E I+N++E + +P
Sbjct: 68 GYVLVQMVMNDDTWHLVRSVPRVMGFIGGTPDHPAPISNREAEMILNRLEQSSDKPRPKT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ GE V V +GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 128 MFQPGEEVRVKEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKL 182
>gi|295694823|ref|YP_003588061.1| NusG antitermination factor [Bacillus tusciae DSM 2912]
gi|295410425|gb|ADG04917.1| NusG antitermination factor [Bacillus tusciae DSM 2912]
Length = 180
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ RWY+V YS E K ++ R+ ++ + + +P+E + + G+K ++
Sbjct: 4 LEKRWYVVHTYSGFENKVKTNLEKRVLSMNMEDKIFRVLVPTEEEIETKNGKKRAVMKKV 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+G+ G P P+ +E+ I+ Q+ + P
Sbjct: 64 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSTGAGSKPIPLHPAEVRAILKQM--GMDEP 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V + V V +GPFA F G ++ V EK +V V V +FGR TP+EL ++QVEKI
Sbjct: 122 KERVDLHVRDAVRVVEGPFADFVGSIEEVYPEKQKVRVLVSMFGRDTPLELEFSQVEKI 180
>gi|163868084|ref|YP_001609288.1| transcription antitermination protein NusG [Bartonella tribocorum
CIP 105476]
gi|161017735|emb|CAK01293.1| transcription antitermination protein [Bartonella tribocorum CIP
105476]
Length = 176
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P++D E++ I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVDQILKQVQEGVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|323136001|ref|ZP_08071084.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
gi|322399092|gb|EFY01611.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
Length = 176
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 98/176 (55%), Positives = 125/176 (71%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYIV YSN EKK ESI ++ GL EI +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREGAAQRGLTDAFEEILVPTEQVVEVRRGRKVSTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K +TD V+ IK+TPKV GFLG P P+++ E I QV V+RP +
Sbjct: 61 FPGYVLVKCNLTDPVFSLIKNTPKVTGFLGADNKPMPISEEEAMRIKGQVAEGVERPKPT 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 ISFEVGETVRVADGPFASFNGLVEEVDEARSRLKVAVSIFGRPTPVELEFGQVEKV 176
>gi|221069403|ref|ZP_03545508.1| NusG antitermination factor [Comamonas testosteroni KF-1]
gi|220714426|gb|EED69794.1| NusG antitermination factor [Comamonas testosteroni KF-1]
Length = 195
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RS + I +PSE VV +R G + +ERR FPG
Sbjct: 22 RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E+ I++Q++ ++P V
Sbjct: 82 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194
>gi|170729021|ref|YP_001763047.1| NusG antitermination factor [Shewanella woodyi ATCC 51908]
gi|169814368|gb|ACA88952.1| NusG antitermination factor [Shewanella woodyi ATCC 51908]
Length = 183
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +++ + ++ EI +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVTKTLHEYIQMHSMEQYFGEILVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEANAILQRLQETTETPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK
Sbjct: 129 IFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182
>gi|328953170|ref|YP_004370504.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
gi|328453494|gb|AEB09323.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
Length = 176
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EKK +++ R G+ L+T++ +P+E+V + KG++ S R+F
Sbjct: 1 MAQKWYVVHTYSGFEKKVKDALEERARSRGMQDLITQVLVPTEQVEEMIKGQRRISHRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYVL++ + D +H ++DTPKV GF+G P+ + D+E E ++NQ++ +P
Sbjct: 61 YPGYVLVRMELNDDTWHLVQDTPKVTGFIGGRMEPAVIPDAEAEKVINQIKEGALKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+G++V V DGPF +FNG+V V EK RV V + +FGR TPVEL ++QVEK
Sbjct: 121 IKFELGDKVRVIDGPFTNFNGVVDEVKGEKGRVRVMISVFGRPTPVELEFSQVEK 175
>gi|304405633|ref|ZP_07387292.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9]
gi|304345672|gb|EFM11507.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9]
Length = 177
Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E V + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLERRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ V TD ++ +++TP V GF+ G+G P+P+ E++ I+ + ++ P
Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHM--GIEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+ E V V GPFA F G ++ + +K+++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFELKETVNVKVGPFAGFVGTIEEILLDKAKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|138893771|ref|YP_001124224.1| transcription antitermination protein NusG [Geobacillus
thermodenitrificans NG80-2]
gi|134265284|gb|ABO65479.1| Transcription antitermination factor [Geobacillus
thermodenitrificans NG80-2]
Length = 177
Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + EI+ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEIKLILKRM--GMPLA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 119 EVDVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|118594012|ref|ZP_01551359.1| transcription antitermination protein NusG [Methylophilales
bacterium HTCC2181]
gi|118439790|gb|EAV46417.1| transcription antitermination protein NusG [Methylophilales
bacterium HTCC2181]
Length = 178
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY VQ YS EK +S+ R+ ++ L EI +P E VV ++ G K SERR
Sbjct: 1 MSKRWYAVQAYSGYEKIVQKSLLERIDQAKLSDQFGEILVPVEEVVEMKGGNKTLSERRL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H ++ TPKV F+ G+ + P+P+ D E++ I+ +++ + P
Sbjct: 61 YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSAQKPTPIKDKEVDIILQRMDDSKVNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V DGPF F+G V+ ++ EKS++ V VVIFGR TPVEL + Q+EK
Sbjct: 121 KMTFEVGESVRVLDGPFKDFSGSVEEINYEKSKLRVSVVIFGRATPVELEFGQIEK 176
>gi|145588230|ref|YP_001154827.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046636|gb|ABP33263.1| transcription antitermination protein nusG [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 190
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS EK + + R++RSG+ I +PSE VV ++ G K +ERRFFP
Sbjct: 16 MRWYVIHAYSGMEKSVKKGLEERIARSGMPEKFGRILVPSEEVVEIKSGAKSVTERRFFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ MTD+ +H +K+TPKV GF+G PSP++ +E+ IM+Q++A V +P
Sbjct: 76 GYVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVAKIMDQMQAGVDKPKPKT 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPF FNG ++ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 136 LFEVGEIVRVKEGPFVDFNGNIEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEKM 190
>gi|260913287|ref|ZP_05919769.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
dagmatis ATCC 43325]
gi|260632874|gb|EEX51043.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
dagmatis ATCC 43325]
Length = 184
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLHHMEEQFGEVLVPTEEVVENVAGKRRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H ++ P+V+GF+ GT + P+P++ E + I+N+++ + ++P
Sbjct: 68 GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEVRVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181
>gi|261866778|ref|YP_003254700.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|293391591|ref|ZP_06635925.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|261412110|gb|ACX81481.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|290952125|gb|EFE02244.1| transcription termination/antitermination factor NusG
[Aggregatibacter actinomycetemcomitans D7S-1]
Length = 183
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP
Sbjct: 8 KRWYVLQAFSGFEARVATTLREYIKLHNMEDQFGEVLVPTEEVVENVAGKRRKSERKYFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H ++ P+V+GF+G + P+P++ E + I+N++E + +P
Sbjct: 68 GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISSREADIILNRLEQSNDKPKPRT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPF FNG V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 128 TFQPGEEVRVTEGPFIDFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 181
>gi|257054435|ref|YP_003132267.1| transcription antitermination protein nusG [Saccharomonospora
viridis DSM 43017]
gi|256584307|gb|ACU95440.1| transcription antitermination protein nusG [Saccharomonospora
viridis DSM 43017]
Length = 267
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + +I R ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 81 WYVVHSYAGYENRVKSNIETRRQTLDVEDYIFQVEVPTEEVTEIKNGQRKIVQRKVLPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------------- 109
+L++ M D + +++TP V GF+G PSP++ E+ +
Sbjct: 141 ILVRMEMNDASWSAVRNTPGVTGFVGATSRPSPLSLDEVVKFLAPKVEKAAPAKAKGEPA 200
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E V V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+
Sbjct: 201 AEEQVAAGPVEVDFEVGESVTVMDGPFATLPATISEVNVDAQKLKVLVSIFGRETPVELS 260
Query: 170 YNQVEKI 176
+NQV KI
Sbjct: 261 FNQVSKI 267
>gi|15612681|ref|NP_240984.1| transcription antitermination protein NusG [Bacillus halodurans
C-125]
gi|14423809|sp|Q9KGE7|NUSG_BACHD RecName: Full=Transcription antitermination protein nusG
gi|10172730|dbj|BAB03837.1| transcriptional antitermination factor [Bacillus halodurans C-125]
Length = 178
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + +P E V+ G+ R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ E++ I+ Q+ +R
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQMGMQEERQ 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + F++ E V V +GPFA+F G ++ + +K ++ V V +FGR TPVEL + Q+EKI
Sbjct: 121 V-EIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178
>gi|288917215|ref|ZP_06411584.1| NusG antitermination factor [Frankia sp. EUN1f]
gi|288351406|gb|EFC85614.1| NusG antitermination factor [Frankia sp. EUN1f]
Length = 266
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ ++ +PGY
Sbjct: 93 WYVVHSYAGYENKVKANLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVLQKKYPGY 152
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--VSSVF 122
+ ++ +TD+ + +++TP V GF+G PSP+ E+ I+ V ++ V +
Sbjct: 153 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVAILAPVAPKEKKVETVKAQE 212
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI
Sbjct: 213 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 266
>gi|49474312|ref|YP_032354.1| transcription antitermination protein NusG [Bartonella quintana
str. Toulouse]
gi|49239816|emb|CAF26207.1| Transcription antitermination protein [Bartonella quintana str.
Toulouse]
Length = 176
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 107/176 (60%), Positives = 136/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKIAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPIPISDREAEQILKQVQEGVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|222056717|ref|YP_002539079.1| NusG antitermination factor [Geobacter sp. FRC-32]
gi|221566006|gb|ACM21978.1| NusG antitermination factor [Geobacter sp. FRC-32]
Length = 175
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ GL+ E+ IP E VV ++KG K S R+F
Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLLERIKNLGLEEKFGEVLIPCETVVELKKGEKRTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELDDDTWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITQRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V EK ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFAGVVEDVKPEKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|258543809|ref|ZP_05704043.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Cardiobacterium hominis ATCC 15826]
gi|258520938|gb|EEV89797.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Cardiobacterium hominis ATCC 15826]
Length = 178
Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY++Q YS E + ++ R+ R GL +I IPSE VV ++ G+K NS+R+F
Sbjct: 1 MSKQWYVLQTYSQFEGQVKRALMERIEREGLQDSFGQILIPSEEVVEIKDGKKRNSQRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP YVL++ M D +H ++ P+V GF+ GT E+P+P+ E+E I+ ++E +++P
Sbjct: 61 FPNYVLVEMEMNDTTWHVVRSIPRVSGFVGGTAESPAPIPAHEVEAILRRIEEGIEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FEVGE V + DGPFA F G V+ V EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEVGEEVRIIDGPFAEFMGTVEEVMYEKSRLKVSVLIFGRPTPVELEFHQVEK 176
>gi|254693950|ref|ZP_05155778.1| transcription antitermination protein NusG [Brucella abortus bv. 3
str. Tulya]
gi|261214243|ref|ZP_05928524.1| transcription antitermination protein NusG [Brucella abortus bv. 3
str. Tulya]
gi|260915850|gb|EEX82711.1| transcription antitermination protein NusG [Brucella abortus bv. 3
str. Tulya]
Length = 175
Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats.
Identities = 102/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG P+PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPAPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|332108098|gb|EGJ09322.1| transcription antitermination protein NusG [Rubrivivax
benzoatilyticus JA2]
Length = 193
Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ R+G+ I +P+E VV ++ G+K +ERRFFP
Sbjct: 19 KRWYVVHAYSGMEKAVERNLRERIDRAGMQDKFGRILVPTEEVVELKNGKKAVTERRFFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K T KV GF+G P+P++++E+ I+NQ++ V +P V
Sbjct: 79 GYVLVEMEMADDTWHLVKHTSKVTGFVGGARNRPAPISEAEVMKIVNQMQEGVDKPRPKV 138
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VGE V V +GPF FNG V+ V+ EKS+V V V IFGR T VEL ++QVEK+
Sbjct: 139 EWTVGEMVRVKEGPFTDFNGAVEEVNYEKSKVKVSVTIFGRATGVELDFSQVEKV 193
>gi|257069526|ref|YP_003155781.1| transcription antitermination protein nusG [Brachybacterium faecium
DSM 4810]
gi|256560344|gb|ACU86191.1| transcription antitermination protein nusG [Brachybacterium faecium
DSM 4810]
Length = 301
Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E + + R ++ + E+ +P E V+ G+K R PGY
Sbjct: 119 WYVIHSYSGHENRVKTQLATRTETQDMEEYIFEVQVPMEDATEVKNGQKKIVRRVRVPGY 178
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
VL++ +T + + ++DTP V GF+G +P+P++ EI ++ ++ SS
Sbjct: 179 VLVRMDLTTESWRVVRDTPGVTGFVGNATDPTPLSFDEIYSLLAPSVGLPEKKRSSGGSK 238
Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
F+VGE V V DGPF + + + E ++ V V IFGR TPVELA++QV
Sbjct: 239 AAAAQKVPDFQVGESVTVMDGPFETMPATISEIHSEAQKLQVLVSIFGRETPVELAFDQV 298
Query: 174 EKI 176
KI
Sbjct: 299 AKI 301
>gi|196251119|ref|ZP_03149798.1| NusG antitermination factor [Geobacillus sp. G11MC16]
gi|196209360|gb|EDY04140.1| NusG antitermination factor [Geobacillus sp. G11MC16]
Length = 177
Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKLILKRM--GMPLA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 119 EVDVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|189424398|ref|YP_001951575.1| NusG antitermination factor [Geobacter lovleyi SZ]
gi|189420657|gb|ACD95055.1| NusG antitermination factor [Geobacter lovleyi SZ]
Length = 175
Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K ++ R+ ++ L EI IPSE VV ++KG K S R+F
Sbjct: 1 MSQKWYGVHTYSGYENKVRLNLTERVKNEKMEDLFGEILIPSETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+LIK +TD+ +H +K+T KV GF+G G P P+ D E+ I ++E ++P
Sbjct: 61 FPGYILIKMELTDETWHIVKETAKVTGFVG-GNTPFPIPDEEVNKIARRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F+VGE V V DGPF +F G++++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VEFDVGETVRVVDGPFLNFTGVIEDVKPDKGKLRVAVTIFGRSTPVELEFMQVEK 174
>gi|110833234|ref|YP_692093.1| transcription antitermination protein NusG [Alcanivorax borkumensis
SK2]
gi|110646345|emb|CAL15821.1| transcription antitermination protein NusG [Alcanivorax borkumensis
SK2]
Length = 180
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 4/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS EK ++ R+ ++ L I +P+E VV ++ G+K SER+F
Sbjct: 1 MAKRWYVVHAYSGFEKYVKRALEERVKLRSMEELFGGILVPTEEVVEIKGGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP----SPVTDSEIEHIMNQVEAAVQR 116
FPGYVL++ M D +H IK+TPKV+GF+G SP+T E + I+ +++ AV++
Sbjct: 61 FPGYVLVQMEMCDDSWHLIKETPKVMGFIGEDSKNPGRVSPITQKEADAILRRMDDAVEK 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P FE GE V V+DGPFA FNG+++ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 PKPKTLFEAGEVVRVNDGPFADFNGVIEEVNYEKSRLQVAVMIFGRSTPVELEFGQVEK 179
>gi|253577165|ref|ZP_04854485.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251843409|gb|EES71437.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. oral taxon 786 str. D14]
Length = 177
Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E V + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ + TD ++ +++TP V GF+ G+G P+P+ E++ I+ + ++ P
Sbjct: 61 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILAHM--GMEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+ E V + GPFA+F G ++ + +KS+V V V +FGR TP+EL Y+QVEKI
Sbjct: 119 KPVIEFELKENVRIKVGPFANFVGSIEEILTDKSKVKVHVNMFGRETPLELDYSQVEKI 177
>gi|269796269|ref|YP_003315724.1| transcription antitermination protein nusG [Sanguibacter keddieii
DSM 10542]
gi|269098454|gb|ACZ22890.1| transcription antitermination protein nusG [Sanguibacter keddieii
DSM 10542]
Length = 273
Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + +I +P E V ++ +K R PGY
Sbjct: 93 WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKIVRRVRIPGY 152
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV---------EAAVQ 115
VL++ +TD+ + ++ TP V GF+G P P+T +E+ ++ + + +
Sbjct: 153 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTQNEVFGMLAPLIAPKAEAGAKGSGS 212
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P V F VGE V V+DGPF + + ++ E ++ V V IFGR TPVEL+++QV K
Sbjct: 213 APAIEVDFTVGESVTVTDGPFDTLPATISEINAEGQKLKVLVSIFGRETPVELSFSQVAK 272
Query: 176 I 176
I
Sbjct: 273 I 273
>gi|300114748|ref|YP_003761323.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|300114760|ref|YP_003761335.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|299540685|gb|ADJ29002.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|299540697|gb|ADJ29014.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
Length = 177
Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E++ S+ R+ R GL +I +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSMEERVRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +KD P+V+GF+ GT + P+P+T++E E I+ ++ ++P
Sbjct: 61 FPGYVLVQMEMDDETWHLVKDVPRVLGFIGGTSDKPAPITEAEAEKILERIREGAEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V++GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEMVRVTEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176
>gi|261409534|ref|YP_003245775.1| NusG antitermination factor [Paenibacillus sp. Y412MC10]
gi|315649717|ref|ZP_07902801.1| NusG antitermination factor [Paenibacillus vortex V453]
gi|329925607|ref|ZP_08280448.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. HGF5]
gi|261285997|gb|ACX67968.1| NusG antitermination factor [Paenibacillus sp. Y412MC10]
gi|315274905|gb|EFU38281.1| NusG antitermination factor [Paenibacillus vortex V453]
gi|328939736|gb|EGG36078.1| transcription termination/antitermination factor NusG
[Paenibacillus sp. HGF5]
Length = 177
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E + + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEIVNKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ + TD ++ +++TP V GF+ G+G P+P+ E+E I+ + ++ P
Sbjct: 61 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHM--GMEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++ E V + GPFA+F G V+ + EKS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDIKESVRIKVGPFANFVGSVEEILAEKSKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|299821040|ref|ZP_07052928.1| transcription termination/antitermination factor NusG [Listeria
grayi DSM 20601]
gi|299816705|gb|EFI83941.1| transcription termination/antitermination factor NusG [Listeria
grayi DSM 20601]
Length = 177
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMTDQIFRVIVPEEEETEVKNGKTKTLKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+ + E E I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTALLPEEAERILKSM--GMNDR 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 119 TVEADFEVGETVMVKEGPFAEFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177
>gi|294085946|ref|YP_003552706.1| transcription antiterminator [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665521|gb|ADE40622.1| Transcription antiterminator [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 176
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 124/176 (70%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V V+S EKK ++I + GL+ + E+ +P+E VV +R+G +V SER+F
Sbjct: 1 MAKRWYVVHVFSGSEKKVAQAITEQAVTHGLEDQIDEVMVPTEEVVEMRRGVRVQSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K ++D+ + + P+V GFLG P P+T+SE E ++ Q+ V+RP S+
Sbjct: 61 FPGYILVKLELSDEAWQLVTSQPRVTGFLGGKGKPIPITNSEAERLIKQMSEGVERPRST 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE+V VSDGPFASFNG V+ D++K+R+ V V IFGR TPVEL Y+QVEK+
Sbjct: 121 ITFDIGEQVRVSDGPFASFNGYVEEADDDKARLKVTVSIFGRSTPVELEYSQVEKV 176
>gi|160895954|ref|YP_001561536.1| NusG antitermination factor [Delftia acidovorans SPH-1]
gi|160361538|gb|ABX33151.1| NusG antitermination factor [Delftia acidovorans SPH-1]
Length = 194
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++RS + I +P+E VV ++ G++ +ERR FPG
Sbjct: 21 RWYIVHAYSGMEKAVERNIIERIARSDMQSKFGRILVPTEEVVEMKNGQRRTTERRLFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E+ I++Q++ ++P V
Sbjct: 81 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVSQMQEGTEKPRHKVE 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPF FNG V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 141 FMPGELVRVKEGPFTDFNGSVEEVNYEKSRLRVSVMIFGRSTPVELEFAQVEK 193
>gi|303256436|ref|ZP_07342450.1| transcription termination/antitermination factor NusG
[Burkholderiales bacterium 1_1_47]
gi|331000376|ref|ZP_08324056.1| transcription termination/antitermination factor NusG
[Parasutterella excrementihominis YIT 11859]
gi|302859927|gb|EFL83004.1| transcription termination/antitermination factor NusG
[Burkholderiales bacterium 1_1_47]
gi|329572082|gb|EGG53751.1| transcription termination/antitermination factor NusG
[Parasutterella excrementihominis YIT 11859]
Length = 178
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+ +WY+V YS EK A ++ R++R GL EI +P+E + V+ G+K S RR
Sbjct: 1 MSDMKWYVVHTYSGMEKSAESALRERIAREGLQDCFEEILVPTEDISEVKNGKKRVSTRR 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+ GY+ +K +M D+ +H +K+T ++ GFL G+ PSP+ +IE I +++EA + P
Sbjct: 61 MYSGYIFVKMIMNDETWHLVKNTARITGFLGGSANKPSPLPAKDIEAIKSKMEAGSEAPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVG V + +GPF FNGI++ V+ +K+R+ V V IFGR TPVELA+N+VEK
Sbjct: 121 PRVEFEVGGSVRIKNGPFTDFNGIIEEVNYDKNRLRVMVSIFGRDTPVELAFNEVEK 177
>gi|114778898|ref|ZP_01453695.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1]
gi|114550867|gb|EAU53433.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1]
Length = 176
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 118/175 (67%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQVYSN E K + R+GL +I +P E VV +++G+KV S+R+F
Sbjct: 1 MAMRWYVVQVYSNFEDKVEHMLRENAERAGLADKFGQILVPREEVVELKEGQKVTSQRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ M D +H +KDT +V GFLG NP P+ E++ ++ Q+E ++RP
Sbjct: 61 FPGYILVEMDMNDDTWHVVKDTRQVSGFLGADNNPKPMPQREVDALIRQIEEGIERPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F++GE V V DGPFASFNG+V+ V E+K+++ V V IFGR TPVEL Y QVEK
Sbjct: 121 VMFDIGEAVRVIDGPFASFNGVVEEVMEDKAKLKVSVSIFGRPTPVELDYIQVEK 175
>gi|315635152|ref|ZP_07890430.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Aggregatibacter segnis ATCC 33393]
gi|315476114|gb|EFU66868.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Aggregatibacter segnis ATCC 33393]
Length = 183
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP
Sbjct: 8 KRWYVLQAFSGFEARVATTLREYIKLHNMEEQFGEVLVPTEEVVENVAGKRRKSERKYFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H ++ P+V+GF+G + P+P+++ E + I+N++E +P
Sbjct: 68 GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPF FNG V+ +D EK R+ V V IFGR TPVEL + QVEK
Sbjct: 128 TFQPGEEVRVTEGPFMDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181
>gi|254714313|ref|ZP_05176124.1| transcription antitermination protein NusG [Brucella ceti
M644/93/1]
gi|254717750|ref|ZP_05179561.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
gi|261219594|ref|ZP_05933875.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
gi|261322089|ref|ZP_05961286.1| transcription antitermination protein NusG [Brucella ceti
M644/93/1]
gi|260924683|gb|EEX91251.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
gi|261294779|gb|EEX98275.1| transcription antitermination protein NusG [Brucella ceti
M644/93/1]
Length = 175
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYLLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVSVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|238897918|ref|YP_002923597.1| component in transcription antitermination [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465675|gb|ACQ67449.1| component in transcription antitermination [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 179
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ ++ +P+E VV VR G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFESRVKQSLHEHIKLHSMEDYFGDVMVPTEEVVEVRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ +M D +H ++ P+V+GF+G G P+P+TD E + I+N+++ +P
Sbjct: 67 GYVLVQMIMNDASWHLVRSVPRVMGFIG-GIVPTPITDKEADAIINRLQQTTDKPRPKTL 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++Q+EK
Sbjct: 126 FEPGELVRVNEGPFAEFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQIEK 178
>gi|319761181|ref|YP_004125118.1| transcription termination/antitermination factor nusg
[Alicycliphilus denitrificans BC]
gi|330823041|ref|YP_004386344.1| NusG antitermination factor [Alicycliphilus denitrificans K601]
gi|317115742|gb|ADU98230.1| transcription termination/antitermination factor NusG
[Alicycliphilus denitrificans BC]
gi|329308413|gb|AEB82828.1| NusG antitermination factor [Alicycliphilus denitrificans K601]
Length = 196
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R+ RSG+ H I +P+E VV ++ G++ +ERR FPG
Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIVRSGMQHKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P +
Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFGQVEK 195
>gi|254420959|ref|ZP_05034683.1| transcription termination/antitermination factor NusG
[Brevundimonas sp. BAL3]
gi|196187136|gb|EDX82112.1| transcription termination/antitermination factor NusG
[Brevundimonas sp. BAL3]
Length = 191
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 97/176 (55%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIV YSN EKK E + + + GL+ +EI +P+E VV +R+GRKVNSER+FFP
Sbjct: 14 HKWYIVNAYSNFEKKVAEQVRDQAKQQGLEDAFSEILVPTEDVVEIRRGRKVNSERKFFP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYVL+K MTD+ YH +K+TPKV GFLG G P PV++ E+++I+ QVE V+RP +
Sbjct: 74 GYVLVKMEMTDQAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPT 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE+V V DGPFASF+G V++VDEE++R+ V V IFGR TPVEL Y QVEK+
Sbjct: 134 IRFDIGEKVKVIDGPFASFDGSVESVDEEQARLRVAVSIFGRATPVELEYAQVEKV 189
>gi|118579107|ref|YP_900357.1| NusG antitermination factor [Pelobacter propionicus DSM 2379]
gi|118501817|gb|ABK98299.1| transcription antitermination protein nusG [Pelobacter propionicus
DSM 2379]
Length = 175
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K ++ R+ G++ EI IPSE VV ++KG K S R+F
Sbjct: 1 MSKKWYGVHTYSGFENKVRLNLHERIKNEGMEEHFEEILIPSETVVELKKGEKRTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K + D+ +H +K+T KV GF+G G P P+ D E+ I ++E ++P
Sbjct: 61 FPGYILVKMELNDETWHIVKETAKVTGFVG-GNTPFPIADEEVNKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F+GIV++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGIVEDVKPDKGKLRVTVTIFGRATPVELEFMQVEK 174
>gi|49475393|ref|YP_033434.1| transcription antitermination protein NusG [Bartonella henselae
str. Houston-1]
gi|49238199|emb|CAF27409.1| Transcription antitermination protein [Bartonella henselae str.
Houston-1]
Length = 176
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERV+ VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVIEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P +S
Sbjct: 61 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPVPISDREAEQILKQVQERVESPKAS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L +NQVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFNQVEKL 176
>gi|169630973|ref|YP_001704622.1| transcription antitermination protein NusG [Mycobacterium abscessus
ATCC 19977]
gi|169242940|emb|CAM63968.1| Transcription antitermination protein NusG [Mycobacterium
abscessus]
Length = 264
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + +I +P+E V ++ G++ R+ PGY
Sbjct: 71 WYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNGQRKQVNRKVLPGY 130
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 131 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQAPAKKPAKGAASAD 190
Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ ++RPV V FEVGE V V+DGPFA+ + V+ E+ R+ V V IFGR
Sbjct: 191 AATASSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASISEVNAEQQRLKVLVSIFGR 250
Query: 163 VTPVELAYNQVEKI 176
TPVEL + QVEK+
Sbjct: 251 ETPVELNFTQVEKL 264
>gi|52424260|ref|YP_087397.1| transcription antitermination protein NusG [Mannheimia
succiniciproducens MBEL55E]
gi|52306312|gb|AAU36812.1| NusG protein [Mannheimia succiniciproducens MBEL55E]
Length = 184
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H ++ P+V+GF+G + P P++ E + I+N+VE +P
Sbjct: 68 GYVLVEMEMNDDTWHLVRSVPRVMGFIGGTPDRPLPISKREADLILNRVEENADKPRPKN 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 TFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181
>gi|85858133|ref|YP_460335.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
gi|85721224|gb|ABC76167.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
Length = 176
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 109/173 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ +G+ ++I IP E VV + G K S+R+F
Sbjct: 1 MAFKWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+K + D +H +KDTPKV GF+G+ E PSP+ D ++E + +++ +P
Sbjct: 61 FPGYILVKMELDDDTWHLVKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
FEVG+ V + DGPF +F+G++ V EK ++ V V IFGR TPVEL + QV
Sbjct: 121 FKFEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173
>gi|152977734|ref|YP_001343363.1| transcription antitermination protein NusG [Actinobacillus
succinogenes 130Z]
gi|150839457|gb|ABR73428.1| NusG antitermination factor [Actinobacillus succinogenes 130Z]
Length = 185
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 9 KRWYVLQAFSGFEGRVAATLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D + ++ P+V+GF+G + P P++ E + I+N+VE +P
Sbjct: 69 GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPLPISQREADAILNRVEQNADKPRPKN 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 129 VFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 182
>gi|71892331|ref|YP_278065.1| transcription antitermination protein [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796437|gb|AAZ41188.1| transcription antitermination protein [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 181
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + S+ + +D + EI +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGFENRVAHSLREHIKLHNMDTMFGEIMVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D +H +K P+V+GF+G + P+P+ D E+ IM++++ +P
Sbjct: 67 GYVLVQMIMNDSSWHLVKSVPRVMGFVGGTCDKPAPIGDKEVNDIMHRLQQIGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVELDFSQVEK 180
>gi|269955419|ref|YP_003325208.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894]
gi|269304100|gb|ACZ29650.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894]
Length = 265
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + +I +P E V ++ +K R PGY
Sbjct: 80 WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKTVRRVRIPGY 139
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--QVEAAVQRPVSSV- 121
VL++ +TD+ + ++ TP V GF+G P P+T E+ ++ +EA S
Sbjct: 140 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPTMLEAPAAAGKPSTA 199
Query: 122 -----------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
FEVGE V V+DGPF + + ++ E ++ V V IFGR TPVEL++
Sbjct: 200 AAKAKAAAVVVDFEVGESVTVTDGPFDTLPATISEINVEAQKLKVLVSIFGRETPVELSF 259
Query: 171 NQVEKI 176
NQV KI
Sbjct: 260 NQVAKI 265
>gi|240850287|ref|YP_002971680.1| transcription antitermination protein NusG [Bartonella grahamii
as4aup]
gi|240267410|gb|ACS50998.1| transcription antitermination protein NusG [Bartonella grahamii
as4aup]
Length = 176
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 107/176 (60%), Positives = 138/176 (78%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVEQILKQVQERVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|171060542|ref|YP_001792891.1| NusG antitermination factor [Leptothrix cholodnii SP-6]
gi|170777987|gb|ACB36126.1| NusG antitermination factor [Leptothrix cholodnii SP-6]
Length = 188
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK ++ R+ RSG+ I +P+E VV ++ G+K +ERRFFP
Sbjct: 14 MRWYVVHAYSGMEKAVERNLRERIDRSGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H +K+T KV GF+G P+P+++ E+ I+ Q++ +++P V
Sbjct: 74 GYVLVEMLMDDESWHLVKNTSKVTGFVGGAKNRPTPISEDEVMKIVTQMQEGIEKPRPKV 133
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V +GPF FNG V+ V+ +K++V V V IFGR TPVEL ++QVEK+
Sbjct: 134 EWEVGEVVRVKEGPFTDFNGSVEEVNYDKNKVRVSVTIFGRATPVELDFHQVEKV 188
>gi|288554711|ref|YP_003426646.1| transcription antitermination protein NusG [Bacillus pseudofirmus
OF4]
gi|288545871|gb|ADC49754.1| transcription antitermination protein NusG [Bacillus pseudofirmus
OF4]
Length = 177
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + +P E V+ G+ ++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPVEEETEVKNGKTKQVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ VMTD ++ +++TP V GF+G+ G P+ + E E I+ Q+ V P
Sbjct: 61 FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTALLPEEAEAILKQM--GVSEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V +GPFA+F G ++ + +K ++ V V +FGR TPVEL ++QVEKI
Sbjct: 119 KADLDFELKESVKVKEGPFANFIGSIEEIYLDKQKIKVHVNMFGRETPVELEFDQVEKI 177
>gi|17987027|ref|NP_539661.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. 16M]
gi|23502126|ref|NP_698253.1| transcription antitermination protein NusG [Brucella suis 1330]
gi|62290159|ref|YP_221952.1| transcription antitermination protein NusG [Brucella abortus bv. 1
str. 9-941]
gi|82700081|ref|YP_414655.1| transcription antitermination protein NusG [Brucella melitensis
biovar Abortus 2308]
gi|148560341|ref|YP_001259167.1| transcription antitermination protein NusG [Brucella ovis ATCC
25840]
gi|161619204|ref|YP_001593091.1| transcription antitermination protein NusG [Brucella canis ATCC
23365]
gi|163843513|ref|YP_001627917.1| transcription antitermination protein NusG [Brucella suis ATCC
23445]
gi|189024395|ref|YP_001935163.1| Bacterial transcription antitermination protein NusG [Brucella
abortus S19]
gi|225627717|ref|ZP_03785754.1| transcription termination/antitermination factor NusG [Brucella
ceti str. Cudo]
gi|225852745|ref|YP_002732978.1| transcription antitermination protein NusG [Brucella melitensis
ATCC 23457]
gi|237815667|ref|ZP_04594664.1| transcription termination/antitermination factor NusG [Brucella
abortus str. 2308 A]
gi|254689465|ref|ZP_05152719.1| transcription antitermination protein NusG [Brucella abortus bv. 6
str. 870]
gi|254697602|ref|ZP_05159430.1| transcription antitermination protein NusG [Brucella abortus bv. 2
str. 86/8/59]
gi|254701988|ref|ZP_05163816.1| transcription antitermination protein NusG [Brucella suis bv. 5
str. 513]
gi|254704530|ref|ZP_05166358.1| transcription antitermination protein NusG [Brucella suis bv. 3
str. 686]
gi|254706574|ref|ZP_05168402.1| transcription antitermination protein NusG [Brucella pinnipedialis
M163/99/10]
gi|254710316|ref|ZP_05172127.1| transcription antitermination protein NusG [Brucella pinnipedialis
B2/94]
gi|254730494|ref|ZP_05189072.1| transcription antitermination protein NusG [Brucella abortus bv. 4
str. 292]
gi|256031810|ref|ZP_05445424.1| transcription antitermination protein NusG [Brucella pinnipedialis
M292/94/1]
gi|256044895|ref|ZP_05447799.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. Rev.1]
gi|256113803|ref|ZP_05454603.1| transcription antitermination protein NusG [Brucella melitensis bv.
3 str. Ether]
gi|256159983|ref|ZP_05457698.1| transcription antitermination protein NusG [Brucella ceti
M490/95/1]
gi|256255211|ref|ZP_05460747.1| transcription antitermination protein NusG [Brucella ceti B1/94]
gi|256257712|ref|ZP_05463248.1| transcription antitermination protein NusG [Brucella abortus bv. 9
str. C68]
gi|256263768|ref|ZP_05466300.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 2 str. 63/9]
gi|256369671|ref|YP_003107181.1| transcription antitermination protein NusG [Brucella microti CCM
4915]
gi|260168944|ref|ZP_05755755.1| transcription antitermination protein NusG [Brucella sp. F5/99]
gi|260546704|ref|ZP_05822443.1| bacterial transcription antitermination protein NusG [Brucella
abortus NCTC 8038]
gi|260565503|ref|ZP_05835987.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 1 str. 16M]
gi|260566226|ref|ZP_05836696.1| bacterial transcription antitermination protein NusG [Brucella suis
bv. 4 str. 40]
gi|260754989|ref|ZP_05867337.1| transcription antitermination protein NusG [Brucella abortus bv. 6
str. 870]
gi|260758205|ref|ZP_05870553.1| transcription antitermination protein NusG [Brucella abortus bv. 4
str. 292]
gi|260762032|ref|ZP_05874375.1| transcription antitermination protein NusG [Brucella abortus bv. 2
str. 86/8/59]
gi|260883999|ref|ZP_05895613.1| transcription antitermination protein NusG [Brucella abortus bv. 9
str. C68]
gi|261222407|ref|ZP_05936688.1| transcription antitermination protein NusG [Brucella ceti B1/94]
gi|261314033|ref|ZP_05953230.1| transcription antitermination protein NusG [Brucella pinnipedialis
M163/99/10]
gi|261317880|ref|ZP_05957077.1| transcription antitermination protein NusG [Brucella pinnipedialis
B2/94]
gi|261752556|ref|ZP_05996265.1| transcription antitermination protein NusG [Brucella suis bv. 5
str. 513]
gi|261755214|ref|ZP_05998923.1| transcription antitermination protein NusG [Brucella suis bv. 3
str. 686]
gi|261758437|ref|ZP_06002146.1| bacterial transcription antitermination protein NusG [Brucella sp.
F5/99]
gi|265988909|ref|ZP_06101466.1| transcription antitermination protein NusG [Brucella pinnipedialis
M292/94/1]
gi|265991323|ref|ZP_06103880.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. Rev.1]
gi|265995160|ref|ZP_06107717.1| transcription antitermination protein NusG [Brucella melitensis bv.
3 str. Ether]
gi|265998373|ref|ZP_06110930.1| transcription antitermination protein NusG [Brucella ceti
M490/95/1]
gi|294852584|ref|ZP_06793257.1| transcription termination/antitermination factor NusG [Brucella sp.
NVSL 07-0026]
gi|297248553|ref|ZP_06932271.1| transcription termination/antitermination factor NusG [Brucella
abortus bv. 5 str. B3196]
gi|306844153|ref|ZP_07476747.1| transcription termination/antitermination factor NusG [Brucella sp.
BO1]
gi|17982681|gb|AAL51925.1| transcription antitermination protein nusg [Brucella melitensis bv.
1 str. 16M]
gi|23348088|gb|AAN30168.1| transcription antitermination protein NusG [Brucella suis 1330]
gi|62196291|gb|AAX74591.1| NusG, transcription antitermination protein NusG [Brucella abortus
bv. 1 str. 9-941]
gi|82616182|emb|CAJ11225.1| Bacterial transcription antitermination protein NusG:KOW:NGN:KOW
(Kyprides, Ouzounis, Woese) motif [Brucella melitensis
biovar Abortus 2308]
gi|148371598|gb|ABQ61577.1| transcription termination/antitermination factor NusG [Brucella
ovis ATCC 25840]
gi|161336015|gb|ABX62320.1| transcription termination/antitermination factor NusG [Brucella
canis ATCC 23365]
gi|163674236|gb|ABY38347.1| transcription termination/antitermination factor NusG [Brucella
suis ATCC 23445]
gi|189019967|gb|ACD72689.1| Bacterial transcription antitermination protein NusG [Brucella
abortus S19]
gi|225617722|gb|EEH14767.1| transcription termination/antitermination factor NusG [Brucella
ceti str. Cudo]
gi|225641110|gb|ACO01024.1| transcription termination/antitermination factor NusG [Brucella
melitensis ATCC 23457]
gi|237788965|gb|EEP63176.1| transcription termination/antitermination factor NusG [Brucella
abortus str. 2308 A]
gi|255999833|gb|ACU48232.1| transcription antitermination protein NusG [Brucella microti CCM
4915]
gi|260095754|gb|EEW79631.1| bacterial transcription antitermination protein NusG [Brucella
abortus NCTC 8038]
gi|260151571|gb|EEW86665.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 1 str. 16M]
gi|260155744|gb|EEW90824.1| bacterial transcription antitermination protein NusG [Brucella suis
bv. 4 str. 40]
gi|260668523|gb|EEX55463.1| transcription antitermination protein NusG [Brucella abortus bv. 4
str. 292]
gi|260672464|gb|EEX59285.1| transcription antitermination protein NusG [Brucella abortus bv. 2
str. 86/8/59]
gi|260675097|gb|EEX61918.1| transcription antitermination protein NusG [Brucella abortus bv. 6
str. 870]
gi|260873527|gb|EEX80596.1| transcription antitermination protein NusG [Brucella abortus bv. 9
str. C68]
gi|260920991|gb|EEX87644.1| transcription antitermination protein NusG [Brucella ceti B1/94]
gi|261297103|gb|EEY00600.1| transcription antitermination protein NusG [Brucella pinnipedialis
B2/94]
gi|261303059|gb|EEY06556.1| transcription antitermination protein NusG [Brucella pinnipedialis
M163/99/10]
gi|261738421|gb|EEY26417.1| bacterial transcription antitermination protein NusG [Brucella sp.
F5/99]
gi|261742309|gb|EEY30235.1| transcription antitermination protein NusG [Brucella suis bv. 5
str. 513]
gi|261744967|gb|EEY32893.1| transcription antitermination protein NusG [Brucella suis bv. 3
str. 686]
gi|262552841|gb|EEZ08831.1| transcription antitermination protein NusG [Brucella ceti
M490/95/1]
gi|262766273|gb|EEZ12062.1| transcription antitermination protein NusG [Brucella melitensis bv.
3 str. Ether]
gi|263002107|gb|EEZ14682.1| transcription antitermination protein NusG [Brucella melitensis bv.
1 str. Rev.1]
gi|263093879|gb|EEZ17830.1| bacterial transcription antitermination protein NusG [Brucella
melitensis bv. 2 str. 63/9]
gi|264661106|gb|EEZ31367.1| transcription antitermination protein NusG [Brucella pinnipedialis
M292/94/1]
gi|294821173|gb|EFG38172.1| transcription termination/antitermination factor NusG [Brucella sp.
NVSL 07-0026]
gi|297175722|gb|EFH35069.1| transcription termination/antitermination factor NusG [Brucella
abortus bv. 5 str. B3196]
gi|306275596|gb|EFM57328.1| transcription termination/antitermination factor NusG [Brucella sp.
BO1]
gi|326409270|gb|ADZ66335.1| Bacterial transcription antitermination protein NusG [Brucella
melitensis M28]
gi|326538979|gb|ADZ87194.1| transcription termination/antitermination factor NusG [Brucella
melitensis M5-90]
Length = 175
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|315125336|ref|YP_004067339.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913]
gi|315013849|gb|ADT67187.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913]
Length = 185
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 78/172 (45%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ +++ + GL+ E+ +P+E VV +R G+K SER+FFPG
Sbjct: 11 RWYVVQAFSGYEKRVAQTLLEHIKIKGLEDSFGEVLVPTEEVVEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + T +V+GF+ GT + P+P++ E + I+N+++ + P +
Sbjct: 71 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182
>gi|86158012|ref|YP_464797.1| transcription antitermination protein nusG [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774523|gb|ABC81360.1| transcription antitermination protein nusG [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 179
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLDERIRQHALQDSFGEVLIPMEVVQEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP--SP-VTDSEIEHIMNQVEAAVQRP 117
FPGY+L+ M + +H +K TPKV GF+G + P P V+D E++ + Q+ +P
Sbjct: 61 FPGYILVNMEMNLQTWHLVKGTPKVTGFVGNAKTPDQVPAVSDIEVQRLTTQISEGSLKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G+ V V+DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178
>gi|261417593|ref|YP_003251275.1| transcription antitermination protein NusG [Geobacillus sp.
Y412MC61]
gi|297528468|ref|YP_003669743.1| NusG antitermination factor [Geobacillus sp. C56-T3]
gi|319765251|ref|YP_004130752.1| NusG antitermination factor [Geobacillus sp. Y412MC52]
gi|261374050|gb|ACX76793.1| NusG antitermination factor [Geobacillus sp. Y412MC61]
gi|297251720|gb|ADI25166.1| NusG antitermination factor [Geobacillus sp. C56-T3]
gi|317110117|gb|ADU92609.1| NusG antitermination factor [Geobacillus sp. Y412MC52]
Length = 177
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDVKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRM--GMPLA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 119 EVDVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|320108601|ref|YP_004184191.1| NusG antitermination factor [Terriglobus saanensis SP1PR4]
gi|319927122|gb|ADV84197.1| NusG antitermination factor [Terriglobus saanensis SP1PR4]
Length = 209
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 118/174 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R+ GL H + + IP+E V VR G+K ER F PG
Sbjct: 35 KWYIIHAYSGFERKVKESLESRIQAYGLQHKIGRVMIPTEPVTEVRNGKKYVIERVFLPG 94
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + + ++HTIK+TP+V GFLGTG++P +++ E+ I+ + + + +P V F
Sbjct: 95 YVLVEMDLDNDLWHTIKNTPRVTGFLGTGDSPVALSEQEVSSIIFRTDVSKDKPKLKVKF 154
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V ++DGPFA+FNG V +V+E+K + V V IFGR TPVE+ +++V+KIV
Sbjct: 155 EKGEMVKITDGPFANFNGAVDDVNEDKQTLKVMVSIFGRSTPVEIEFSKVDKIV 208
>gi|262273344|ref|ZP_06051159.1| transcription antitermination protein NusG [Grimontia hollisae CIP
101886]
gi|262222717|gb|EEY74027.1| transcription antitermination protein NusG [Grimontia hollisae CIP
101886]
Length = 181
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAKSLKEHIKMHEMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M D+ +H ++ P+V+GF+G + P+P++D E + I+N++E A + PV
Sbjct: 67 GYVLVQMLMNDESWHLVRSVPRVMGFIGGTPDRPAPISDKEADAILNRLEKASESPVHKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 VYEAGEVVRVTEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEK 180
>gi|251793503|ref|YP_003008232.1| transcription termination/antitermination factor NusG
[Aggregatibacter aphrophilus NJ8700]
gi|247534899|gb|ACS98145.1| transcription termination/antitermination factor NusG
[Aggregatibacter aphrophilus NJ8700]
Length = 183
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP
Sbjct: 8 KRWYVLQAFSGFEARVATTLREYIKLHQMEEQFGEVLVPTEEVVENVAGKRRKSERKYFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H ++ P+V+GF+G + P+P+++ E + I+N++E +P
Sbjct: 68 GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPF FNG V+ +D EK R+ V V IFGR TPVEL + QVEK
Sbjct: 128 TFQPGEEVRVTEGPFIDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181
>gi|222112416|ref|YP_002554680.1| nusg antitermination factor [Acidovorax ebreus TPSY]
gi|221731860|gb|ACM34680.1| NusG antitermination factor [Acidovorax ebreus TPSY]
Length = 196
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P +
Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195
>gi|78221834|ref|YP_383581.1| transcription antitermination protein nusG [Geobacter
metallireducens GS-15]
gi|78193089|gb|ABB30856.1| transcription antitermination protein nusG [Geobacter
metallireducens GS-15]
Length = 175
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY V YS E K S+ R+ GL+ EI IPSE VV ++KG K S R+F
Sbjct: 1 MAKKWYGVHTYSGFENKVRLSLSERIKNLGLEESFGEILIPSETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ ++D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELSDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VQFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|148657431|ref|YP_001277636.1| NusG antitermination factor [Roseiflexus sp. RS-1]
gi|148569541|gb|ABQ91686.1| transcription antitermination protein nusG [Roseiflexus sp. RS-1]
Length = 194
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E K +++ R+ + + + +P+E + ++ G++ +++ FP
Sbjct: 21 RRWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ M D ++ +++TP V F+G G P+P+ +SE++ I+ Q+E + P V
Sbjct: 81 GYVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEESEVKAILRQMEQ--EAPKVKVS 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++VG+ V ++DGPF F G+V +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 139 YQVGQAVKITDGPFTDFEGVVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193
>gi|153009272|ref|YP_001370487.1| transcription antitermination protein NusG [Ochrobactrum anthropi
ATCC 49188]
gi|239832136|ref|ZP_04680465.1| transcription termination/antitermination factor NusG [Ochrobactrum
intermedium LMG 3301]
gi|151561160|gb|ABS14658.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
gi|239824403|gb|EEQ95971.1| transcription termination/antitermination factor NusG [Ochrobactrum
intermedium LMG 3301]
Length = 175
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSELIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRATLTDAVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|39997959|ref|NP_953910.1| transcription antitermination protein NusG [Geobacter
sulfurreducens PCA]
gi|39984904|gb|AAR36260.1| transcription antitermination protein NusG [Geobacter
sulfurreducens PCA]
gi|298506900|gb|ADI85623.1| transcription antitermination protein NusG [Geobacter
sulfurreducens KN400]
Length = 175
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS E K S+ R+ GL+ EI IPSE VV ++KG K S R+F
Sbjct: 1 MSKKWYGVHTYSGFENKVRLSLQERVKNLGLEEFFGEILIPSETVVELKKGEKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P
Sbjct: 61 FPGYILVNMELNDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VEFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174
>gi|297618398|ref|YP_003703557.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM
12680]
gi|297146235|gb|ADI02992.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM
12680]
Length = 195
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+V YS E K ++ R++ +++ + ++ IP E V + G+K +++R F
Sbjct: 23 ERRWYVVHTYSGYENKVKANLEKRVASMNMENQIFQVLIPEEDEVEYKGGQKKVTKKRIF 82
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++ +MTD + T++ TP V GF+G+G P P+ E++ I+ + +P +
Sbjct: 83 PGYVLVEMIMTDDSWVTVRHTPGVTGFVGSGTKPIPLQPHEVQKILKHMGMLETKP--KI 140
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V GPF +F G+VK + ++ ++ V + +FGR TPVEL Y QVEK+
Sbjct: 141 DVEVGEYVRVKSGPFENFEGMVKEILADRGKLRVNISMFGRETPVELDYEQVEKL 195
>gi|328955955|ref|YP_004373288.1| transcription antitermination protein nusG [Coriobacterium
glomerans PW2]
gi|328456279|gb|AEB07473.1| transcription antitermination protein nusG [Coriobacterium
glomerans PW2]
Length = 178
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-R 59
M+ RWY+V YS E + + R+ G+ + +I IP E V +++G ++ +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLERRIESMGMQDRIFDIEIPIEHVTEIKEGGHRETKDAK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E +M + +
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGANGKPAPLSRDEFNKMMRRSSKGEAPKRT 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V EVG V V+ GP A F+G V V+ E +V V ++IFGR TPVEL+++QV I
Sbjct: 121 AVGLEVGTTVRVTSGPLADFDGQVAEVNAEAGKVKVILLIFGRETPVELSFDQVAAI 177
>gi|121596189|ref|YP_988085.1| transcription antitermination protein nusG [Acidovorax sp. JS42]
gi|120608269|gb|ABM44009.1| transcription antitermination protein nusG [Acidovorax sp. JS42]
Length = 196
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG
Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P +
Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195
>gi|319404387|emb|CBI77990.1| transcription antitermination protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 182
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 104/175 (59%), Positives = 136/175 (77%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV +R+GRKV+SER+FF
Sbjct: 8 AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+L+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS+
Sbjct: 68 PGYILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVKEGVESPKSSM 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182
>gi|168830297|gb|ACA34394.1| NusG [uncultured bacterium pTW2]
Length = 200
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 81/183 (44%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ R+G++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 17 KRWYVVHAYSGFEKSVAQALRDRIVRTGMEDRFGDVMVPTEEVIEMRAGQKRRSERKFFP 76
Query: 63 GYVLIKAVMTDK---------VYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ V D+ +H IK+TPKV+GF+G T + P P+ D E I+++V+
Sbjct: 77 GYVLVQIVTHDEGGIPRIDSESWHLIKETPKVMGFIGGTADKPLPIRDDEAAAILDRVQE 136
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V DGPF FNG+V+ V+ +KSR+ V V+IFGR TPVEL + Q
Sbjct: 137 GVEKPRPKVLFEAGQMVRVVDGPFNDFNGVVEEVNYDKSRLRVAVLIFGRSTPVELEFGQ 196
Query: 173 VEK 175
VEK
Sbjct: 197 VEK 199
>gi|256061327|ref|ZP_05451475.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
gi|261325332|ref|ZP_05964529.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
gi|261301312|gb|EEY04809.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
Length = 175
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TP++L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPIDLEYGQVDKL 175
>gi|254719303|ref|ZP_05181114.1| transcription antitermination protein NusG [Brucella sp. 83/13]
gi|265984304|ref|ZP_06097039.1| transcription antitermination protein NusG [Brucella sp. 83/13]
gi|306838948|ref|ZP_07471773.1| transcription termination/antitermination factor NusG [Brucella sp.
NF 2653]
gi|306840285|ref|ZP_07473058.1| transcription termination/antitermination factor NusG [Brucella sp.
BO2]
gi|264662896|gb|EEZ33157.1| transcription antitermination protein NusG [Brucella sp. 83/13]
gi|306289740|gb|EFM60926.1| transcription termination/antitermination factor NusG [Brucella sp.
BO2]
gi|306405981|gb|EFM62235.1| transcription termination/antitermination factor NusG [Brucella sp.
NF 2653]
Length = 175
Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S
Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V VSDGPFASFNG+V+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGVVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175
>gi|298246509|ref|ZP_06970315.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963]
gi|297553990|gb|EFH87855.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963]
Length = 196
Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 105/172 (61%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + YS E K + R++ + + + +P E V +++G++ +R+ FPGY
Sbjct: 25 WFAIHTYSGYENKVRSHLEARIASMDMRGKIFRVIVPMEEEVEIKQGQRRTVQRKVFPGY 84
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ +M+D+ ++ +++TP V F+G+G P P+ + EI+ I+ QV ++P + V F
Sbjct: 85 VLVEMIMSDEAWYVVRNTPGVTSFVGSGNKPVPLQEHEIKTILKQVTKETEKPKAKVSFS 144
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V DGPFA F G V +++ ++++V V V FGR TPV L + QVEKI
Sbjct: 145 KGQSVRVVDGPFADFIGTVSDLNMDRNKVTVLVSFFGRETPVILDFLQVEKI 196
>gi|332172374|gb|AEE21628.1| NusG antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 190
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+VQ +S E + +++ + ++ EI +P+E V+ +R G++ SER+FFP
Sbjct: 16 KKWYVVQAFSQYEGRVKKTLLEYIKMHEMEDYFGEILVPTEEVIEMRSGQQRKSERKFFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M + +H +K P+V+GF+ GT + P+P+T+ E I+N++E V +P
Sbjct: 76 GYVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITNKEANAILNRLEEGVDKPKPKT 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 136 LFEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189
>gi|302523949|ref|ZP_07276291.1| transcription termination/antitermination factor NusG [Streptomyces
sp. AA4]
gi|302432844|gb|EFL04660.1| transcription termination/antitermination factor NusG [Streptomyces
sp. AA4]
Length = 265
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R ++ + +I +P+E V ++ G++ +R+ PGY
Sbjct: 77 WYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
+L++ + D+ + +++TP V GF+G PSP+T E+ +
Sbjct: 137 ILVRMDLNDQSWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPQVEKEAPAKAAKGGE 196
Query: 117 ---------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
P V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVE
Sbjct: 197 SAAAATSGAPTVEVDFEVGESVTVMDGPFATLPATISEVNVDGQKLKVLVSIFGRETPVE 256
Query: 168 LAYNQVEKI 176
L+++QV KI
Sbjct: 257 LSFSQVSKI 265
>gi|153869595|ref|ZP_01999148.1| Transcription termination factor [Beggiatoa sp. PS]
gi|152073936|gb|EDN70849.1| Transcription termination factor [Beggiatoa sp. PS]
Length = 187
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 11/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YSN EK S+ R+ SGL +I +P+E VV +R G S+R+
Sbjct: 1 MALRWYVVHTYSNFEKAVKVSLEERIRHSGLHDKFGQILVPTEEVVEMRDGVTRKSDRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
+PGYVL++ M D+ +H +K+ PKV+GF+G G +P+P++++E E I+ +
Sbjct: 61 YPGYVLVQMEMNDETWHIVKNVPKVMGFIGGGTAERKGKANQFFSPTPLSEAEAEAILQR 120
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V+ ++P FEVGE V V +GPF FNG+V+ V+ EK+R+ V V IFGR TPVEL
Sbjct: 121 VQEGSEKPRPKTLFEVGEVVRVKEGPFTDFNGVVEEVNYEKNRLRVAVRIFGRSTPVELE 180
Query: 170 YNQVEK 175
+ QVEK
Sbjct: 181 FGQVEK 186
>gi|226305205|ref|YP_002765163.1| transcription antitermination protein NusG [Rhodococcus
erythropolis PR4]
gi|229490716|ref|ZP_04384554.1| transcription antitermination protein NusG [Rhodococcus
erythropolis SK121]
gi|226184320|dbj|BAH32424.1| transcription antitermination protein NusG [Rhodococcus
erythropolis PR4]
gi|229322536|gb|EEN88319.1| transcription antitermination protein NusG [Rhodococcus
erythropolis SK121]
Length = 278
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 88 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 147
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP+T +E+ +
Sbjct: 148 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLLPQQEQKKQQAAAAAVA 207
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+ +P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 208 AGEAPSESFGKPLIEVDFEVGESVTVMDGPFATLPASISEVNGEQQKLKVLVSIFGRETP 267
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 268 VELNFNQVAKI 278
>gi|319405861|emb|CBI79493.1| transcription antitermination protein [Bartonella sp. AR 15-3]
Length = 182
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 104/175 (59%), Positives = 137/175 (78%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWYIVQVYSN EKK E+I + GLDHL ++ +P+ERVV +R+GRKV+SER+FF
Sbjct: 8 AARWYIVQVYSNFEKKVAEAIDKEAKQKGLDHLFKKVFVPTERVVEIRRGRKVDSERKFF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+L+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QVE V+ P SS+
Sbjct: 68 PGYILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVEEGVESPKSSM 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNGIV+ V++E+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEKERSRLKVEVLIFGRPTPVDLEFDQVEKL 182
>gi|296395107|ref|YP_003659991.1| NusG antitermination factor [Segniliparus rotundus DSM 44985]
gi|296182254|gb|ADG99160.1| NusG antitermination factor [Segniliparus rotundus DSM 44985]
Length = 258
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 18/190 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ R+ + + +I +P+E V V+ G++ R+ PG
Sbjct: 70 KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 129
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------- 112
Y+L++ + D+ + T+++TP V GF+GT P+P+ +++ + +
Sbjct: 130 YILVRMDLNDESWSTVRNTPGVTGFVGT-SRPTPLALNDVVKFLLPRQEPKKAAAAAKTK 188
Query: 113 ------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A V+ V ++VGE V V+DGPFA+ + ++ E+ ++ V V IFGR TPV
Sbjct: 189 QGDGFAAAIASVTEVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPV 248
Query: 167 ELAYNQVEKI 176
EL++NQV KI
Sbjct: 249 ELSFNQVTKI 258
>gi|297569434|ref|YP_003690778.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2]
gi|296925349|gb|ADH86159.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2]
Length = 176
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 112/176 (63%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYI+ YS E++ ++ R+ +G + + EI +P+E+VV + KG + S R+F
Sbjct: 1 MARRWYILHTYSGFEEQVKTALQERIKNAGQEEMFGEILVPTEQVVEMVKGARKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + ++ +HT++ TPKV GF+G NP P+ D + I+ +++ +P
Sbjct: 61 FPGYILVNVDLNEETWHTVRGTPKVTGFIGNDLNPEPLADEDAMKIIGRIQDGALKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE G++V V DGPFA+F G+V V+ EK RV V V IFGR TPVEL + QV KI
Sbjct: 121 VSFEEGDQVRVVDGPFANFQGVVDEVNPEKGRVRVRVSIFGRETPVELEFIQVSKI 176
>gi|297564023|ref|YP_003682996.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848472|gb|ADH70490.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 280
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ EK+ ++ R ++ + ++ +P V V+ G++ + PGY
Sbjct: 96 WYVVHTYAGYEKRVKANVESRTQSLNMEEYIFQVEVPEHEVTEVKSGKRQQVTEKVLPGY 155
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
VL++ +TD+ + I++TP V GF+G P+P++ +E+ ++ +
Sbjct: 156 VLVRMDLTDESWSAIRNTPGVTGFVGLSNKPAPLSLTEVAKLLAPEPEVEPEQAQQARTA 215
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V V +EVGE V V +GPFA+ V ++ + ++ V V IFGR TPVEL++N
Sbjct: 216 GGVGEARMDVAYEVGESVTVMEGPFATLPATVSEINPDTQKLKVLVSIFGRETPVELSFN 275
Query: 172 QVEKI 176
QV KI
Sbjct: 276 QVAKI 280
>gi|308171992|ref|YP_003918697.1| transcription antitermination factor [Bacillus amyloliquefaciens
DSM 7]
gi|307604856|emb|CBI41227.1| transcription antitermination factor [Bacillus amyloliquefaciens
DSM 7]
gi|328910063|gb|AEB61659.1| transcription antitermination factor [Bacillus amyloliquefaciens
LL3]
Length = 177
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|72163058|ref|YP_290715.1| transcription antitermination protein NusG [Thermobifida fusca YX]
gi|71916790|gb|AAZ56692.1| transcription antitermination protein nusG [Thermobifida fusca YX]
Length = 250
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + ++ R ++ + ++ +P++ V V+ G++ + PGY
Sbjct: 72 WYVVHTYAGYENRVKANLENRTQSLNMEDYIFQVEVPTQEVTEVKSGKRQQVTEKVLPGY 131
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-------VQRP 117
VL++ +TD+ + ++ TP V GF+G P P++ E+ ++ P
Sbjct: 132 VLVRMELTDESWAAVRHTPGVTGFVGLSNRPVPLSLDEVAELLAPEPETEEEQAKKEAEP 191
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+GE V V DGPFA+ V V+ + ++ V V IFGR TPVEL +NQV KI
Sbjct: 192 RGEVEYEIGESVTVMDGPFATLPATVSEVNPDTQKLKVLVSIFGRETPVELGFNQVSKI 250
>gi|297582435|ref|YP_003698215.1| NusG antitermination factor [Bacillus selenitireducens MLS10]
gi|297140892|gb|ADH97649.1| NusG antitermination factor [Bacillus selenitireducens MLS10]
Length = 177
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + I +P E V+ G+ ++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMEMTDKIFRILVPVEEENEVKNGKSKVVTKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ VMTD ++ +++TP V GF+G+ G P+ + E + I+ Q+ V+ P
Sbjct: 61 FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALLPDEADAILRQM--GVEAP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V F++ E V V +GPFA+F G ++++ EK ++ V V +FGR TPVEL ++QVEKI
Sbjct: 119 KAEVDFDLKESVKVKEGPFANFIGSIEDISAEKRKLKVHVNMFGRETPVELDFHQVEKI 177
>gi|146329117|ref|YP_001210163.1| transcription termination-antitermination factor NusG
[Dichelobacter nodosus VCS1703A]
gi|146232587|gb|ABQ13565.1| transcription termination-antitermination factor NusG
[Dichelobacter nodosus VCS1703A]
Length = 178
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++Q YS E+ ++ R+ R GL EI IP+E VV ++ +K S+ +F
Sbjct: 1 MAKQWYVLQSYSQFEQYVKRALQERIEREGLQDSFGEILIPTEEVVEIKDNKKRISQHKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYV ++ M D +H + PKV GF+ GT E+P+ ++ E++ I+N+++ V++P
Sbjct: 61 YPGYVFVEMEMNDTTWHVVNSIPKVSGFVGGTKESPAAISQEEVDKILNRMQEGVEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE+GE + + DGPFA F G V+ V+ EKSR+ V V+IFGR TPVEL +NQVEK
Sbjct: 121 KTLFEIGEELRIIDGPFADFTGTVEEVNYEKSRLKVSVLIFGRPTPVELEFNQVEK 176
>gi|226361072|ref|YP_002778850.1| transcription antitermination protein NusG [Rhodococcus opacus B4]
gi|226239557|dbj|BAH49905.1| transcription antitermination protein NusG [Rhodococcus opacus B4]
Length = 288
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 99 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 158
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
+L++ + D+ + +++TP V GF+G PSP+T +E+ + + +
Sbjct: 159 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 218
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 219 GETGGETFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 278
Query: 167 ELAYNQVEKI 176
EL++ QV KI
Sbjct: 279 ELSFTQVAKI 288
>gi|119947054|ref|YP_944734.1| NusG antitermination factor [Psychromonas ingrahamii 37]
gi|119865658|gb|ABM05135.1| transcription antitermination protein nusG [Psychromonas ingrahamii
37]
Length = 183
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +++ + + ++ +I +P+E VV +R G+K SER+FFP
Sbjct: 8 KRWYVVQAFSGYEGRVQKTLLEYIKLNEMEDYFGQILVPTEEVVEMRAGQKRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K +V+GF+G E P+P++ E+++I+N+++ + P
Sbjct: 68 GYVLVEMAMNDDSWHLVKSIDRVMGFIGGSKERPAPISQKEVDNILNRLQESHDSPRPRT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V++GPF F G V+ VD EKSR+ V V IFGR TPV+L ++QVEK
Sbjct: 128 LFEAGQIVRVTEGPFVDFTGTVEKVDYEKSRLKVSVSIFGRATPVDLDFSQVEK 181
>gi|256831815|ref|YP_003160542.1| NusG antitermination factor [Jonesia denitrificans DSM 20603]
gi|256685346|gb|ACV08239.1| NusG antitermination factor [Jonesia denitrificans DSM 20603]
Length = 273
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E + ++G R+ ++ + +I +P E V ++ +K R PG
Sbjct: 92 QWYVIHSYAGYENRVKSNLGTRIQSLNMEDYIFQIEVPMEEVAEIKNAQKKIVRRVRIPG 151
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
YVL++ +TD+ + T++ TP V GF+G P P+T E+ ++ +
Sbjct: 152 YVLVRMDLTDESWGTVRHTPGVTGFVGNTHQPVPLTRDEVFSMLAPTLQQGESPKKKSKA 211
Query: 116 -RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+V F VGE V V+DGPF + + ++ E ++ V V IFGR TPVEL +NQV
Sbjct: 212 KPAAVTVDFTVGESVTVTDGPFETLPATISEINIEAQKLKVLVSIFGRETPVELGFNQVA 271
Query: 175 KI 176
KI
Sbjct: 272 KI 273
>gi|124268640|ref|YP_001022644.1| transcription antitermination protein NusG [Methylibium
petroleiphilum PM1]
gi|124261415|gb|ABM96409.1| transcription antitermination protein nusG [Methylibium
petroleiphilum PM1]
Length = 192
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS EK ++ R+ R+G+ I +P+E VV ++ G+K +ERRFFPG
Sbjct: 19 RWYVVHAYSGMEKAVERNLRERIDRAGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFPG 78
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M D+ +H +K T KV GF+G P+P++++E+ I++Q++ +++P V
Sbjct: 79 YVLVEMLMDDESWHLVKHTSKVTGFVGGAKNRPAPISEAEVMKIVHQMQEGIEKPRPKVE 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V V +GPF FNG ++ V+ +KS+V V V IFGR TPVEL +++VEK+
Sbjct: 139 WEVGELVRVKEGPFTDFNGAIEEVNYDKSKVRVSVTIFGRSTPVELDFHEVEKV 192
>gi|121609218|ref|YP_997025.1| NusG antitermination factor [Verminephrobacter eiseniae EF01-2]
gi|121553858|gb|ABM58007.1| transcription antitermination protein nusG [Verminephrobacter
eiseniae EF01-2]
Length = 212
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV Y EK +I R+ R+G+ I +P+E+VV ++ G++ +ERR FPG
Sbjct: 39 RWYIVHAYLGMEKAVERNIQERIHRAGMQDKFGRILVPTEQVVEMKNGQRKTTERRLFPG 98
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+L++ VM D +H +K T KV GF+G P ++D+E++ I++ + +P +
Sbjct: 99 YMLVEMVMDDDTWHLVKHTNKVKGFVGGSKNRPPSISDAEVQSIVSHMIEGADKPRHKME 158
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VGE+V V +GPF FNG+V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 159 LMVGEQVRVKEGPFTDFNGMVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 211
>gi|114331777|ref|YP_747999.1| transcription antitermination protein NusG [Nitrosomonas eutropha
C91]
gi|114308791|gb|ABI60034.1| transcription antitermination protein nusG [Nitrosomonas eutropha
C91]
Length = 177
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 81/177 (45%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V YS EK +++ R+ + EI IP E VV V+ G+K SER+F
Sbjct: 1 MSKKWYAVHTYSGFEKSVKKALRDRIVLHKFEDKFGEILIPVEEVVEVKGGQKNISERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+LI+ MTD+ +H +K TPKV GF+G P P++ EIE I NQV V++P
Sbjct: 61 FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSMQPIPISRKEIESIFNQVREGVEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE GE V V +GPF F+G V+ V+ +K+++ V V IFGR TPVEL ++QV+KI
Sbjct: 121 KVIFEAGEAVRVKEGPFTDFHGNVEEVNYDKNKLRVSVSIFGRPTPVELDFHQVDKI 177
>gi|109896921|ref|YP_660176.1| NusG antitermination factor [Pseudoalteromonas atlantica T6c]
gi|109699202|gb|ABG39122.1| transcription antitermination protein nusG [Pseudoalteromonas
atlantica T6c]
Length = 190
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 77/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+VQ +S E + +++ + ++ EI +P+E V+ +R G++ SER+FFP
Sbjct: 16 KKWYVVQAFSQYEGRVKKTLLEYIKMHEMEDSFGEILVPTEEVIEMRSGQQRKSERKFFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M + +H +K P+V+GF+ GT + P+P+T E I+N++E V +P
Sbjct: 76 GYVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITTKEANAILNRLEEGVDKPKPKT 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 136 LFEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189
>gi|302390620|ref|YP_003826441.1| transcription antitermination protein nusG [Thermosediminibacter
oceani DSM 16646]
gi|302201248|gb|ADL08818.1| transcription antitermination protein nusG [Thermosediminibacter
oceani DSM 16646]
Length = 174
Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K ++ R+ G+ + + +P E V ++ G+K ++R+
Sbjct: 1 MSKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRVLVPVEEEVEIKNGKKKVTQRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++TD +H +++TP V GF+GTG P P+ +SEI+ I+ Q+ ++ P
Sbjct: 61 FPGYVLVEMIVTDDSWHVVRNTPGVTGFVGTGNKPIPLQESEIKAILKQM--GIEEPKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +V + V V GPF +F G V ++ EK +V V + +FGR TP+EL +NQVEKI
Sbjct: 119 LDIDVDQNVKVVSGPFENFVGKVLEINHEKQKVKVLISMFGRETPIELDFNQVEKI 174
>gi|258651255|ref|YP_003200411.1| NusG antitermination factor [Nakamurella multipartita DSM 44233]
gi|258554480|gb|ACV77422.1| NusG antitermination factor [Nakamurella multipartita DSM 44233]
Length = 306
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ ++ + +I +P+E V ++ G++ +R+ +PGY
Sbjct: 124 WYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPGY 183
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQ----------VEAA 113
+L++ +TD+ + +++TP V GF+G T + PS +T E+ I+
Sbjct: 184 ILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTPG 243
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ V F +GE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+++QV
Sbjct: 244 SAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQV 303
Query: 174 EKI 176
KI
Sbjct: 304 AKI 306
>gi|56418627|ref|YP_145945.1| transcription antitermination protein NusG [Geobacillus
kaustophilus HTA426]
gi|56378469|dbj|BAD74377.1| transcription antitermination factor [Geobacillus kaustophilus
HTA426]
Length = 177
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMKDKIFRVVVPEETETDVKNGKRKTTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRM--GMPLA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 119 EVDVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177
>gi|197122681|ref|YP_002134632.1| NusG antitermination factor [Anaeromyxobacter sp. K]
gi|220917464|ref|YP_002492768.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
gi|196172530|gb|ACG73503.1| NusG antitermination factor [Anaeromyxobacter sp. K]
gi|219955318|gb|ACL65702.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
Length = 179
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLDERIRQHSLQDAFGEVLIPMEVVQEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP--SP-VTDSEIEHIMNQVEAAVQRP 117
FPGY+L+ M+ + +H +K TPKV GF+G + P P V+D E++ + Q+ +P
Sbjct: 61 FPGYILVNMEMSLQTWHLVKGTPKVTGFVGNAKTPEQVPAVSDVEVQRLTTQISEGSLKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G+ V V+DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178
>gi|134298080|ref|YP_001111576.1| NusG antitermination factor [Desulfotomaculum reducens MI-1]
gi|134050780|gb|ABO48751.1| transcription antitermination protein nusG [Desulfotomaculum
reducens MI-1]
Length = 175
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++
Sbjct: 1 MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+GTG P P+ + E + I+ Q+ ++ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGTGSKPIPLDEEEAKTIIKQM--GIEEPKAK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +GE V V+DGPF +F G+++ + +K +V V V +FGR TP+EL + Q+EK+
Sbjct: 119 IDVVLGENVKVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKL 174
>gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii
RHA1]
gi|110818507|gb|ABG93791.1| transcription antitermination protein [Rhodococcus jostii RHA1]
Length = 264
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 75 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
+L++ + D+ + +++TP V GF+G PSP+T +E+ + + +
Sbjct: 135 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 194
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 195 GETGGESFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 254
Query: 167 ELAYNQVEKI 176
EL++ QV KI
Sbjct: 255 ELSFTQVAKI 264
>gi|317509041|ref|ZP_07966672.1| transcription termination/antitermination factor NusG [Segniliparus
rugosus ATCC BAA-974]
gi|316252696|gb|EFV12135.1| transcription termination/antitermination factor NusG [Segniliparus
rugosus ATCC BAA-974]
Length = 263
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 18/190 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E K ++ R+ + + +I +P+E V V+ G++ R+ PG
Sbjct: 75 KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 134
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR------- 116
Y+L++ + D+ + T+++TP V GF+GT P+P+T ++ + + +
Sbjct: 135 YILVRMDLNDESWSTVRNTPGVTGFVGT-SRPTPLTLDDVVKFLLPRQEPKKTAPAAKAK 193
Query: 117 ----------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
PV+ V ++VGE V V+DGPFA+ + ++ E+ ++ V V IFGR TPV
Sbjct: 194 QGDGFAAAIAPVALVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPV 253
Query: 167 ELAYNQVEKI 176
EL++NQV KI
Sbjct: 254 ELSFNQVTKI 263
>gi|94676921|ref|YP_588932.1| transcription termination/antitermination factor NusG [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|94220071|gb|ABF14230.1| transcription termination/antitermination factor NusG [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 181
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +S+ + + L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVIQAFSGLEGRVAQSLREHIKLYATEKLFGEVIVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL+ VM D +H +++ P+V+GF+ GT + PSP++D E+ IMN+++ +P
Sbjct: 67 GYVLVHMVMNDSSWHLVRNVPRVMGFIGGTSDRPSPISDKEVLAIMNRLQKTGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD +KSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYDKSRLKVSVSIFGRTTPVELDFSQVEK 180
>gi|168823324|ref|ZP_02835324.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205340452|gb|EDZ27216.1| transcription termination/antitermination factor NusG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
Length = 177
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174
>gi|315446044|ref|YP_004078923.1| transcription antitermination protein nusG [Mycobacterium sp.
Spyr1]
gi|315264347|gb|ADU01089.1| transcription antitermination protein nusG [Mycobacterium sp.
Spyr1]
Length = 272
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 83 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A +RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262
Query: 167 ELAYNQVEKI 176
EL +NQV KI
Sbjct: 263 ELTFNQVAKI 272
>gi|317485864|ref|ZP_07944726.1| transcription termination/antitermination factor NusG [Bilophila
wadsworthia 3_1_6]
gi|316922879|gb|EFV44103.1| transcription termination/antitermination factor NusG [Bilophila
wadsworthia 3_1_6]
Length = 229
Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWYIV YS E++ +I + + + L+ E+ +P+E+V+ + + G K + R+F+P
Sbjct: 56 RWYIVHTYSGFEQRVEATIKEMMRNAQDNGLIHEVVVPTEKVIELGKGGAKRTTTRKFYP 115
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY++++ MTD +H ++ PKV GF+G P+P+ D E I++ +E ++P
Sbjct: 116 GYIMLRMTMTDFSWHLVQSIPKVTGFVGGKNRPAPMKDEEAARILSLMETRQEQPRPKFS 175
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 176 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 228
>gi|156744234|ref|YP_001434363.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941]
gi|156235562|gb|ABU60345.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941]
Length = 194
Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E K +++ R+ + + + +P+E + ++ G++ +++ FP
Sbjct: 21 RRWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ M D ++ +++TP V F+G G P+P+ + E++ I+ Q+E + P V
Sbjct: 81 GYVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEEEEVKAILKQMEQ--EAPKVKVS 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++VG+ V ++DGPF F GIV +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 139 YQVGQAVKITDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193
>gi|331699210|ref|YP_004335449.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190]
gi|326953899|gb|AEA27596.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190]
Length = 327
Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ ++ + ++ +P+E V ++ G++ +R+ PGY
Sbjct: 143 WYVVHSYAGYENKVKSNLETRVQTLDVEDFIYQVEVPTEEVTEIKNGQRKQVQRKVLPGY 202
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
+L++ + D+ + +++TP V GF+G PSP++ ++ + ++ +
Sbjct: 203 ILVRMELNDQSWGAVRNTPGVTGFVGATSRPSPLSIDDVLKFLLPKTEPAKKDAAKPGAA 262
Query: 121 ---------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL +
Sbjct: 263 ATPGKAAVEVDFEVGESVTVMDGPFATLPATINEVNVDAQKLKVLVSIFGRETPVELGFG 322
Query: 172 QVEKI 176
QV KI
Sbjct: 323 QVSKI 327
>gi|154684619|ref|YP_001419780.1| transcription antitermination protein NusG [Bacillus
amyloliquefaciens FZB42]
gi|154350470|gb|ABS72549.1| NusG [Bacillus amyloliquefaciens FZB42]
Length = 177
Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|239993447|ref|ZP_04713971.1| transcription termination/antitermination factor NusG [Alteromonas
macleodii ATCC 27126]
Length = 183
Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ YS E + +++ + ++ ++ +P+E VV +R G+K SER+F+P
Sbjct: 9 KRWYVVQAYSQYESRVKKTLLEYIKMHNMEDYFGQVLVPTEEVVEMRAGQKRKSERKFYP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ MT++ +H +K P+V+GF+ GT + P P+T E + I+N++E V +P
Sbjct: 69 GYVLVEMAMTEESWHLVKSVPRVLGFIGGTSDRPMPITQKEADAILNRLEENVDKPRPKT 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L + QVEK
Sbjct: 129 LFEPGEVIRVIDGPFADFNGVVEEVDYEKSRVKVSVLIFGRSTPVDLEFGQVEK 182
>gi|269926929|ref|YP_003323552.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798]
gi|269790589|gb|ACZ42730.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798]
Length = 201
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E K + R+ G+ + +I +P+ + +R+G++ +++ FPG
Sbjct: 29 QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ M D ++ ++ TP V GF+G+G P+P+ + E+E I+ ++ + + P +
Sbjct: 89 YVLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRM--SEEPPKVKMSL 146
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+GE V + DGPF F G V ++EEK +V V + IFGR TPVEL + QVEKIV
Sbjct: 147 RLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEKIV 200
>gi|37913002|gb|AAR05331.1| predicted transcription antiterminator NusG [uncultured marine
alpha proteobacterium HOT2C01]
Length = 177
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 95/176 (53%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WYIV YS EKK +I + ++ +EI +P+E VV V+KG+K N+ER+F
Sbjct: 1 MSHKWYIVHAYSGFEKKVAAAIFEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL K MTD+ YH +K PKV GFLG T PS V++SEI I+ +E V P
Sbjct: 61 FPGYVLTKMEMTDETYHMVKSLPKVSGFLGHTQGKPSAVSESEINKILQDIEEGVTSPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK
Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176
>gi|319760678|ref|YP_004124616.1| Transcription antitermination protein nusG [Candidatus Blochmannia
vafer str. BVAF]
gi|318039392|gb|ADV33942.1| Transcription antitermination protein nusG [Candidatus Blochmannia
vafer str. BVAF]
Length = 180
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + V S+ + + + +I +P+E VV +R G++ SER+FFP
Sbjct: 6 KRWYVVQAFSGFENRVVHSLNEYIKLKNMGSMFGDIMVPTEEVVEMRAGQRRKSERKFFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM D +H ++ PKV+GF+G + P+P+ D EI++I+ +++ +P
Sbjct: 66 GYVLVQMVMNDASWHLVRSIPKVMGFVGGTCDKPAPIGDKEIDNIIYRLQQIGDKPRPKT 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L ++QVEK
Sbjct: 126 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVDLDFSQVEK 179
>gi|119468180|ref|ZP_01611306.1| component in transcription antitermination; couples translation and
transcription [Alteromonadales bacterium TW-7]
gi|119448173|gb|EAW29437.1| component in transcription antitermination; couples translation and
transcription [Alteromonadales bacterium TW-7]
Length = 185
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 79/172 (45%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ +++ + GL+ EI +P+E VV +R G+K SER+FFPG
Sbjct: 11 RWYVVQAFSGYEKRVAQTLTEHIKIEGLEESFGEILVPTEEVVEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + T +V+GF+ GT + P+P++ E + I+N+++ + P +
Sbjct: 71 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182
>gi|94266155|ref|ZP_01289867.1| transcription antitermination protein NusG:KOW [delta
proteobacterium MLMS-1]
gi|93453270|gb|EAT03719.1| transcription antitermination protein NusG:KOW [delta
proteobacterium MLMS-1]
Length = 176
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYI+ YS E++ ++ R+ + + + EI +P+E+VV + KG K S R+F
Sbjct: 1 MARRWYILHTYSGFEEQVKTALLERIKNAAQEEMFGEILVPTEQVVEMVKGAKKTSSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ + D+ +HT++DTPKV GF+G NP P+ D+E + I+ +++ +P
Sbjct: 61 FPGYILVNVELNDQTWHTVRDTPKVTGFVGNDLNPEPLDDAEAKKIIGRIQDGALKPKPK 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G++V V DGPFASF G+V V +K RV V V IFGR TPVEL Y QV K
Sbjct: 121 VSFEEGDQVRVVDGPFASFQGVVDEVYPDKGRVRVRVSIFGRETPVELEYIQVSK 175
>gi|16272657|ref|NP_438875.1| transcription antitermination protein NusG [Haemophilus influenzae
Rd KW20]
gi|1171875|sp|P43916|NUSG_HAEIN RecName: Full=Transcription antitermination protein nusG
gi|1573719|gb|AAC22374.1| transcription antitermination protein (nusG) [Haemophilus
influenzae Rd KW20]
Length = 185
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 10 KRWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+G + P+P++ E + I+N++E +P
Sbjct: 70 GYVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRN 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V V++GPFA FNG V+ VD EK R+ V V +FGR TPVEL + QVEKI
Sbjct: 130 EYHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSMFGRATPVELEFGQVEKI 184
>gi|94971707|ref|YP_593755.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
gi|94553757|gb|ABF43681.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
Length = 199
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 118/175 (67%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYI+ YS E+K ES+ R+ GL+ + + IP+E V VR G+K SER F+P
Sbjct: 24 MKWYIIHSYSGFERKVKESLESRIHAFGLEGKIGRVLIPTESVTEVRGGKKYTSERMFYP 83
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ M D V+H +K TP+V GF+GTG+ P+P+++ E++ I+ +V + ++P V
Sbjct: 84 GYVLVEMDMDDNVWHVVKSTPRVTGFVGTGQQPTPLSEEEVQQIVYRVADSREKPKLKVK 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+E E V +S+GPFA+F G+V V+E+K + V V IFGR TPVEL + QVEK++
Sbjct: 144 YEKNETVRISEGPFATFQGVVDEVNEDKETLKVMVTIFGRSTPVELEFGQVEKVL 198
>gi|328551802|gb|AEB22294.1| transcription antitermination protein NusG [Bacillus
amyloliquefaciens TA208]
Length = 177
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPF +F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELNETVKVIDGPFTNFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|126209181|ref|YP_001054406.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae L20]
gi|165977153|ref|YP_001652746.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|126097973|gb|ABN74801.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877254|gb|ABY70302.1| transcription antitermination protein [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 176
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFP
Sbjct: 1 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++ E + I+N+V+ ++P
Sbjct: 61 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 121 EFQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 174
>gi|297537519|ref|YP_003673288.1| NusG antitermination factor [Methylotenera sp. 301]
gi|297256866|gb|ADI28711.1| NusG antitermination factor [Methylotenera sp. 301]
Length = 178
Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY VQ +S EK + + R+ R+GL +I +P E V+ ++ G+K SER+
Sbjct: 1 MSMKWYAVQAFSGFEKSVQKGLEERIVRTGLQEQFGQILVPIEEVIEMKAGQKTISERKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ MTD+ +H +K TP+V F+ G+ + P+P+ D E++ I+ +++ + P
Sbjct: 61 YPGYVLVQMAMTDESWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V + DGPF F+G V++V+ EKS++HV VVIFGR TPVEL ++Q+EK
Sbjct: 121 KLTFEKGESVRIVDGPFKDFSGNVEDVNYEKSKLHVSVVIFGRSTPVELEFSQIEK 176
>gi|319407388|emb|CBI81039.1| transcription antitermination protein [Bartonella sp. 1-1C]
Length = 182
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 105/175 (60%), Positives = 136/175 (77%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV +R+GRKV+SER+FF
Sbjct: 8 AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS+
Sbjct: 68 PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVESPKSSM 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 182
>gi|121602807|ref|YP_988876.1| transcription antitermination protein NusG [Bartonella
bacilliformis KC583]
gi|120614984|gb|ABM45585.1| transcription termination/antitermination factor NusG [Bartonella
bacilliformis KC583]
Length = 176
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 106/176 (60%), Positives = 134/176 (76%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIVQ YSN EKK E+I + GLDHL +I +P ERVV VR+GRKV+SER+F
Sbjct: 1 MVARWYIVQAYSNFEKKVAEAISKEAKQKGLDHLFKKIFVPIERVVEVRRGRKVDSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+ A +TD VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS
Sbjct: 61 FPGYVLVCAELTDDVYHLIKNTPKVTGFLGSDARPVPISDREAEQILQQVQEGVESPKSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE+V V+DGPF SFNG+V+ V+E++SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VTFEVGEQVRVADGPFISFNGVVQEVEEDRSRLKVEVLIFGRPTPVDLEFGQVEKL 176
>gi|74316411|ref|YP_314151.1| transcription antitermination protein nusG [Thiobacillus
denitrificans ATCC 25259]
gi|74055906|gb|AAZ96346.1| NusG antitermination factor [Thiobacillus denitrificans ATCC 25259]
Length = 187
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 13/186 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT------------IPSERVVSVRK 50
RWY+V YS EK ++ R+ R+G+ I +P E VV +R
Sbjct: 1 MRWYVVHAYSGFEKSVARALEERIERAGMRDRFGVIVDEKTGKPRPAIMVPVEEVVEMRA 60
Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQ 109
G+K +ER+FFPGYVL++ M D +H +K TPKV GF+G T P+P+++ E++ I++Q
Sbjct: 61 GQKKTAERKFFPGYVLVQMEMDDDTWHLVKSTPKVTGFVGGTATKPAPISEKEVQAILDQ 120
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ V++P V FEVGE+V V DGPF FNG V+ V+ +KS++ V V+IFGR TPVEL
Sbjct: 121 MREGVEKPKPKVLFEVGEQVRVIDGPFTDFNGNVEEVNYDKSKLRVSVMIFGRATPVELG 180
Query: 170 YNQVEK 175
+ QVEK
Sbjct: 181 FGQVEK 186
>gi|68249293|ref|YP_248405.1| transcription antitermination protein NusG [Haemophilus influenzae
86-028NP]
gi|145628433|ref|ZP_01784234.1| transcription antitermination protein NusG [Haemophilus influenzae
22.1-21]
gi|145633842|ref|ZP_01789564.1| transcription antitermination protein NusG [Haemophilus influenzae
3655]
gi|145635955|ref|ZP_01791640.1| transcription antitermination protein NusG [Haemophilus influenzae
PittAA]
gi|145637968|ref|ZP_01793607.1| transcription antitermination protein NusG [Haemophilus influenzae
PittHH]
gi|145639477|ref|ZP_01795082.1| transcription antitermination protein NusG [Haemophilus influenzae
PittII]
gi|145642380|ref|ZP_01797940.1| transcription antitermination protein NusG [Haemophilus influenzae
R3021]
gi|148826639|ref|YP_001291392.1| transcription antitermination protein NusG [Haemophilus influenzae
PittEE]
gi|148827885|ref|YP_001292638.1| transcription antitermination protein NusG [Haemophilus influenzae
PittGG]
gi|229845550|ref|ZP_04465678.1| transcription antitermination protein NusG [Haemophilus influenzae
6P18H1]
gi|229847175|ref|ZP_04467279.1| transcription antitermination protein NusG [Haemophilus influenzae
7P49H1]
gi|260581525|ref|ZP_05849333.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae RdAW]
gi|260583372|ref|ZP_05851143.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae NT127]
gi|319775442|ref|YP_004137930.1| transcription antitermination protein NusG [Haemophilus influenzae
F3047]
gi|319897848|ref|YP_004136045.1| transcription antitermination protein nusg [Haemophilus influenzae
F3031]
gi|329122528|ref|ZP_08251112.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus aegyptius ATCC 11116]
gi|68057492|gb|AAX87745.1| transcription antitermination protein NusG [Haemophilus influenzae
86-028NP]
gi|144980208|gb|EDJ89867.1| transcription antitermination protein NusG [Haemophilus influenzae
22.1-21]
gi|144985284|gb|EDJ92123.1| transcription antitermination protein NusG [Haemophilus influenzae
3655]
gi|145266788|gb|EDK06807.1| transcription antitermination protein NusG [Haemophilus influenzae
PittAA]
gi|145268834|gb|EDK08798.1| transcription antitermination protein NusG [Haemophilus influenzae
PittHH]
gi|145271524|gb|EDK11436.1| transcription antitermination protein NusG [Haemophilus influenzae
PittII]
gi|145272923|gb|EDK12809.1| transcription antitermination protein NusG [Haemophilus influenzae
22.4-21]
gi|148716799|gb|ABQ99009.1| transcription antitermination protein NusG [Haemophilus influenzae
PittEE]
gi|148719127|gb|ABR00255.1| transcription antitermination protein NusG [Haemophilus influenzae
PittGG]
gi|229809851|gb|EEP45573.1| transcription antitermination protein NusG [Haemophilus influenzae
7P49H1]
gi|229811566|gb|EEP47267.1| transcription antitermination protein NusG [Haemophilus influenzae
6P18H1]
gi|260091823|gb|EEW75778.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae RdAW]
gi|260093577|gb|EEW77494.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae NT127]
gi|301169435|emb|CBW29035.1| transcription termination factor [Haemophilus influenzae 10810]
gi|309751684|gb|ADO81668.1| Transcription antitermination protein NusG [Haemophilus influenzae
R2866]
gi|309973786|gb|ADO96987.1| Transcription antitermination protein NusG [Haemophilus influenzae
R2846]
gi|317433354|emb|CBY81733.1| transcription antitermination protein NusG [Haemophilus influenzae
F3031]
gi|317450033|emb|CBY86247.1| transcription antitermination protein NusG [Haemophilus influenzae
F3047]
gi|327473157|gb|EGF18580.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus aegyptius ATCC 11116]
Length = 185
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 10 KRWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+G + P+P++ E + I+N++E +P
Sbjct: 70 GYVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRN 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI
Sbjct: 130 EYHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 184
>gi|308070990|ref|YP_003872595.1| Transcription antitermination protein nusG [Paenibacillus polymyxa
E681]
gi|310644219|ref|YP_003948978.1| nusg antitermination factor [Paenibacillus polymyxa SC2]
gi|305860269|gb|ADM72057.1| Transcription antitermination protein nusG [Paenibacillus polymyxa
E681]
gi|309249170|gb|ADO58737.1| NusG antitermination factor [Paenibacillus polymyxa SC2]
Length = 177
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V YS E K ++ R+ G++ + + +P E + + G+K R+
Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVTKDGKKKTVMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ V TD ++ +++TP V GF+ G+G P+P+ E+E I+ + P
Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHMGMVE--P 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+V E V + GPFA+F G V+ + EKS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDVKESVRIKVGPFANFVGSVEEILVEKSKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|238020173|ref|ZP_04600599.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147]
gi|237868567|gb|EEP69571.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147]
Length = 179
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 81/179 (45%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK +++ R++R G+++ +I +P E VV ++ GRK SER+F
Sbjct: 1 MSKQWYVVQAYSGFEKNVQKALKERIAREGVENYFGQILVPVEEVVDIKNGRKTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVE--AAVQRP 117
FPGYVL++ MTD +H +K TP+V GF+ GT P P++ E+ IM Q ++P
Sbjct: 61 FPGYVLVEMEMTDASWHLVKSTPRVNGFIGGTANRPLPISQREVNSIMEQFGGMQGEKKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG++V ++DGPFA F G V VD E+S++ V V +FGR TPVEL + QVEKI
Sbjct: 121 KPKTEFEVGQQVRINDGPFADFTGDVNTVDYERSKLRVSVQVFGRETPVELDFGQVEKI 179
>gi|329118708|ref|ZP_08247408.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Neisseria bacilliformis ATCC BAA-1200]
gi|327465143|gb|EGF11428.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Neisseria bacilliformis ATCC BAA-1200]
Length = 177
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++Q YS EK +++ R+ R ++ EI +P E VV ++ GR+ SER+F
Sbjct: 1 MAKQWYVIQAYSGFEKNVQKTLKERIIRENMEQYFGEILVPVEEVVDIKNGRRTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M+D +H +K TP+V GF+G P P++ E+E IM QV+ ++P
Sbjct: 61 FPGYVLVEMEMSDDSWHLVKSTPRVSGFVGGVANRPLPISQKEVETIMAQVQVDGEKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+G+RV V++GPFA FNGIV+ V+ E++++ V V IFGR TPVEL + QVEK
Sbjct: 121 RVSFEIGQRVRVNEGPFADFNGIVEEVNYERNKLRVSVQIFGRETPVELEFGQVEK 176
>gi|251799659|ref|YP_003014390.1| NusG antitermination factor [Paenibacillus sp. JDR-2]
gi|247547285|gb|ACT04304.1| NusG antitermination factor [Paenibacillus sp. JDR-2]
Length = 177
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+V Y+ E K ++ RL G++ + + +P E V + G+K +R+
Sbjct: 1 MEKRWYVVHTYAGYENKVKANLERRLESMGMEDKIFRVLVPMEEEVVEKDGKKKTVQRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+PGYVL++ V TD ++ +++TP V GF+ G+G P + E+E I+ + ++ P
Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPIALMPDEVEQILKHM--GMEEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++ E V V GPFA F G V+ + +KS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDLKETVRVKVGPFADFVGTVEEILLDKSKLKVHVNMFGRETPLELDYTQVEKI 177
>gi|332037819|gb|EGI74269.1| transcription antitermination protein NusG [Pseudoalteromonas
haloplanktis ANT/505]
Length = 187
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ +++ + GL+ EI +P+E VV +R G+K SER+FFPG
Sbjct: 13 RWYVVQAFSGYEKRVAQTLIEHIKIEGLESSFGEILVPTEEVVEMRAGQKRKSERKFFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + T +V+GF+ GT + P+P++ E E I+N+++ + P +
Sbjct: 73 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISPKEAERILNRLQENAEAPKPATL 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 133 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 184
>gi|88861455|ref|ZP_01136082.1| component in transcription antitermination; couples translation and
transcription [Pseudoalteromonas tunicata D2]
gi|88816537|gb|EAR26365.1| component in transcription antitermination; couples translation and
transcription [Pseudoalteromonas tunicata D2]
Length = 185
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q +S EK+ ++I + L+H EI +P+E VV +R G+K SER+FFPG
Sbjct: 11 RWYVIQAFSGFEKRVQQTILEHIRIQNLEHFFGEILVPTEEVVEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M D +H + P+V+GF+ GT E P+P++ E + I+N+++ P +
Sbjct: 71 YVLVQMDMNDASWHLVNSIPRVMGFIGGTKERPAPISSKEADRILNRLQENADSPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
FE GE V V+DGPFA F G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFTGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182
>gi|319783303|ref|YP_004142779.1| transcription termination/antitermination factor NusG
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169191|gb|ADV12729.1| transcription termination/antitermination factor NusG
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 175
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIHQIVVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD V+ +K+TPKV GFLG P P+T++E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174
>gi|240169413|ref|ZP_04748072.1| transcription antitermination protein NusG [Mycobacterium kansasii
ATCC 12478]
Length = 238
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS ++ ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGAAKKAAKGAASTA 168
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 169 AVAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228
Query: 167 ELAYNQVEKI 176
EL ++QV KI
Sbjct: 229 ELTFSQVSKI 238
>gi|145225693|ref|YP_001136371.1| transcription antitermination protein NusG [Mycobacterium gilvum
PYR-GCK]
gi|145218179|gb|ABP47583.1| transcription antitermination protein nusG [Mycobacterium gilvum
PYR-GCK]
Length = 272
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 83 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A +RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262
Query: 167 ELAYNQVEKI 176
EL +NQV KI
Sbjct: 263 ELTFNQVAKI 272
>gi|119713237|gb|ABL97303.1| putative transcription antiterminator NusG [uncultured marine
bacterium HF10_12C08]
Length = 177
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT +WYIV YS EKK +I + ++ +EI +P+E VV V+KG+K N+ER+F
Sbjct: 1 MTHKWYIVHAYSGFEKKVAAAILEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL K MTD+ YH +K PKV GFLG T PS V +S+I I+ +E V P
Sbjct: 61 FPGYVLTKMEMTDETYHMVKALPKVSGFLGHTQGKPSAVPESDINKILQDIEEGVTSPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK
Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176
>gi|312115370|ref|YP_004012966.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
gi|311220499|gb|ADP71867.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
Length = 176
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 100/176 (56%), Positives = 128/176 (72%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK +SI R + +GLD +I +P E VV VR+GRKV +ER+F
Sbjct: 1 MTKRWYIVHAYSNFEKKVADSIRERAAAAGLDECFEDIVVPMEEVVEVRRGRKVATERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+K M D+ + IK+TPKV GFLG P P+++ E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLVKMDMNDRAFLLIKNTPKVTGFLGADNKPQPISEIEAQRILNQVKEGVERPKPS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE+V V+DGPFASF+G V+ VDEE++R+ V V IFGR TPVEL Y QVEKI
Sbjct: 121 ISFEIGEQVRVADGPFASFSGHVEEVDEERARLKVAVSIFGRATPVELEYAQVEKI 176
>gi|301059238|ref|ZP_07200175.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
gi|300446673|gb|EFK10501.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
Length = 176
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 109/176 (61%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YS E + +S+ R+ G I +P+E++V ++KG+K + R+F
Sbjct: 1 MELKWYIVHTYSGFEDRVKKSLEERIESFGQQDYFGRILVPTEQIVELKKGQKKTTSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + + +HT+++T KV GF+G NP+PV+D E E ++ Q+E V RP +
Sbjct: 61 YPGYILVEMHINQETWHTVRNTAKVTGFVGGEVNPTPVSDEEAERVIRQMEEGVSRPKAR 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V DGPF +F G V V +K ++ V + IFGR TPVEL + QV I
Sbjct: 121 YNFEEGDEVRVIDGPFTNFQGTVSEVKPDKEKLRVLITIFGRPTPVELDFIQVTTI 176
>gi|320161301|ref|YP_004174525.1| transcription antitermination protein NusG [Anaerolinea thermophila
UNI-1]
gi|319995154|dbj|BAJ63925.1| transcription antitermination protein NusG [Anaerolinea thermophila
UNI-1]
Length = 226
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K ++ R+ G+ + ++ IP++ + V+ G++ ER FPGY
Sbjct: 58 WYVVHCYSGYENKVRHNLEQRIETMGMKDKIFDVVIPTQEEIEVKDGKRRTVERHVFPGY 117
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ +MT++ ++ +++TP V GF+G + P+P+ E+ I+ ++EA + P V F+
Sbjct: 118 VLVNMIMTEESWYVVRNTPGVTGFVGM-DQPTPLRPEEVAQILKRMEA--EAPRVKVTFK 174
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VGERV + DGPF F G V +D E+++V V V FGR TPVEL + QVEK
Sbjct: 175 VGERVRIVDGPFNDFRGTVSEIDMERNKVRVMVNFFGRETPVELDFLQVEK 225
>gi|15607779|ref|NP_215153.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Rv]
gi|15840042|ref|NP_335079.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis CDC1551]
gi|31791823|ref|NP_854316.1| transcription antitermination protein NusG [Mycobacterium bovis
AF2122/97]
gi|121636560|ref|YP_976783.1| transcription antitermination protein NusG [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148660413|ref|YP_001281936.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Ra]
gi|148821843|ref|YP_001286597.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis F11]
gi|167969069|ref|ZP_02551346.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Ra]
gi|215402414|ref|ZP_03414595.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis 02_1987]
gi|215410186|ref|ZP_03418994.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis 94_M4241A]
gi|215429474|ref|ZP_03427393.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis EAS054]
gi|215444758|ref|ZP_03431510.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T85]
gi|218752287|ref|ZP_03531083.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis GM 1503]
gi|219556483|ref|ZP_03535559.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T17]
gi|224989032|ref|YP_002643719.1| transcription antitermination protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253797579|ref|YP_003030580.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 1435]
gi|254230970|ref|ZP_04924297.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis C]
gi|254363593|ref|ZP_04979639.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis str. Haarlem]
gi|254549599|ref|ZP_05140046.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260185520|ref|ZP_05762994.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis CPHL_A]
gi|260199646|ref|ZP_05767137.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T46]
gi|260203809|ref|ZP_05771300.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis K85]
gi|289442033|ref|ZP_06431777.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T46]
gi|289446196|ref|ZP_06435940.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis CPHL_A]
gi|289552893|ref|ZP_06442103.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 605]
gi|289568578|ref|ZP_06448805.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T17]
gi|289573243|ref|ZP_06453470.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis K85]
gi|289744357|ref|ZP_06503735.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 02_1987]
gi|289752683|ref|ZP_06512061.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis EAS054]
gi|289756723|ref|ZP_06516101.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T85]
gi|289760764|ref|ZP_06520142.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis GM 1503]
gi|294996157|ref|ZP_06801848.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis 210]
gi|297633137|ref|ZP_06950917.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis KZN 4207]
gi|297730117|ref|ZP_06959235.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis KZN R506]
gi|298524131|ref|ZP_07011540.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 94_M4241A]
gi|306774749|ref|ZP_07413086.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu001]
gi|306781520|ref|ZP_07419857.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu002]
gi|306783287|ref|ZP_07421609.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu003]
gi|306787656|ref|ZP_07425978.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu004]
gi|306794423|ref|ZP_07432725.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu005]
gi|306796392|ref|ZP_07434694.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu006]
gi|306966660|ref|ZP_07479321.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu009]
gi|306970853|ref|ZP_07483514.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu010]
gi|307078578|ref|ZP_07487748.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu011]
gi|307083142|ref|ZP_07492255.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu012]
gi|313657444|ref|ZP_07814324.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis KZN V2475]
gi|54037928|sp|P65590|NUSG_MYCBO RecName: Full=Transcription antitermination protein nusG
gi|54041678|sp|P65589|NUSG_MYCTU RecName: Full=Transcription antitermination protein nusG
gi|1877377|emb|CAB07098.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium
tuberculosis H37Rv]
gi|13880188|gb|AAK44893.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis CDC1551]
gi|31617410|emb|CAD93520.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium
bovis AF2122/97]
gi|121492207|emb|CAL70674.1| Probable transcription antitermination protein nusG [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124600029|gb|EAY59039.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis C]
gi|134149107|gb|EBA41152.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis str. Haarlem]
gi|148504565|gb|ABQ72374.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis H37Ra]
gi|148720370|gb|ABR04995.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis F11]
gi|224772145|dbj|BAH24951.1| transcription antitermination protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253319082|gb|ACT23685.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 1435]
gi|289414952|gb|EFD12192.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T46]
gi|289419154|gb|EFD16355.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis CPHL_A]
gi|289437525|gb|EFD20018.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 605]
gi|289537674|gb|EFD42252.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis K85]
gi|289542332|gb|EFD45980.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T17]
gi|289684885|gb|EFD52373.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 02_1987]
gi|289693270|gb|EFD60699.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis EAS054]
gi|289708270|gb|EFD72286.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis GM 1503]
gi|289712287|gb|EFD76299.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T85]
gi|298493925|gb|EFI29219.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis 94_M4241A]
gi|308216642|gb|EFO76041.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu001]
gi|308325691|gb|EFP14542.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu002]
gi|308331948|gb|EFP20799.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu003]
gi|308335733|gb|EFP24584.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu004]
gi|308337311|gb|EFP26162.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu005]
gi|308343169|gb|EFP32020.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu006]
gi|308355683|gb|EFP44534.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu009]
gi|308359638|gb|EFP48489.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu010]
gi|308363494|gb|EFP52345.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu011]
gi|308367148|gb|EFP55999.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu012]
gi|323720996|gb|EGB30061.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis CDC1551A]
gi|326905138|gb|EGE52071.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis W-148]
gi|328457360|gb|AEB02783.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis KZN 4207]
Length = 238
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS + ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228
Query: 167 ELAYNQVEKI 176
EL + QV KI
Sbjct: 229 ELTFGQVSKI 238
>gi|21672333|ref|NP_660400.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25008872|sp|Q8KA65|NUSG_BUCAP RecName: Full=Transcription antitermination protein nusG
gi|21622935|gb|AAM67611.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 181
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++Q +S E + +SI + + ++ E+ +PSE V+ +R G++ SE +F
Sbjct: 5 LKKKWYVLQAFSGFESRVAQSIKEHVKLNKMNDFFGEVMVPSEEVIEIRGGQRRKSEYKF 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVLI +MTD +H I++ P+V+GF+G + PSP++D E++ I+N++ +P
Sbjct: 65 FPGYVLIHMIMTDSTWHLIRNVPRVLGFIGGKSDKPSPISDKEVDIIINRLRQIGDKPRP 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 125 KTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFRQVEK 180
>gi|32034812|ref|ZP_00134924.1| COG0250: Transcription antiterminator [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|190151046|ref|YP_001969571.1| transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303249959|ref|ZP_07336161.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303253131|ref|ZP_07339280.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307246643|ref|ZP_07528714.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307248770|ref|ZP_07530783.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307253389|ref|ZP_07535260.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307255628|ref|ZP_07537433.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257804|ref|ZP_07539561.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307260079|ref|ZP_07541791.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307262208|ref|ZP_07543858.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307264409|ref|ZP_07545995.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189916177|gb|ACE62429.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647813|gb|EFL78020.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302651022|gb|EFL81176.1| transcription antitermination protein NusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306852515|gb|EFM84749.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306854697|gb|EFM86887.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306859068|gb|EFM91110.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306861477|gb|EFM93466.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863710|gb|EFM95636.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865915|gb|EFM97791.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868082|gb|EFM99908.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870225|gb|EFN01983.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 187
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFP
Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++ E + I+N+V+ ++P
Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EFQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|188584822|ref|YP_001916367.1| transcription antitermination protein nusG [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349509|gb|ACB83779.1| transcription antitermination protein nusG [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 174
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +W++V YS E K ++ R++ G+D + I +P+E ++++ GR+ E++
Sbjct: 1 MEKQWFVVHTYSGYENKVKTNLEKRVASMGMDDKIFRIVVPTETQINIKDGRRQEKEKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYV+++ VM + ++ +++TP V GF+G+G P P+ + E+ IM Q+ + P
Sbjct: 61 FPGYVIVEMVMDEDSWYVVRNTPGVTGFVGSGAKPVPLNEDEVASIMKQM--GYEEPKKE 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E G+ V + +GPF +F+G ++ V +K +V V V +FGR TPVEL + QVEK+
Sbjct: 119 VDLEAGQEVKILEGPFENFSGQIEEVYPDKEKVKVTVSMFGRETPVELDFEQVEKV 174
>gi|256827385|ref|YP_003151344.1| transcription antitermination protein nusG [Cryptobacterium curtum
DSM 15641]
gi|256583528|gb|ACU94662.1| transcription antitermination protein nusG [Cryptobacterium curtum
DSM 15641]
Length = 178
Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 66/178 (37%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M +WY++ YS E K +++ R+ GL++ V +I IP E V ++ GR+V S+++
Sbjct: 1 MAKKWYVLHTYSGYENKVKKNLESRIETMGLENNVFDIQIPMETVTEIKDGGRRVESDKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPV 118
PGYVL++ + D+ + +++TP V GF+G+ NP+P+T E IM + + A ++ V
Sbjct: 61 VLPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQANPAPLTREEYNKIMKRTDHADTRKAV 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V GP A F+G+V V E ++V V V IFGR TPVEL+++QV ++
Sbjct: 121 VTSDLAEGQTVKVVSGPLADFDGVVSEVSPEANKVKVLVSIFGRETPVELSFDQVTRL 178
>gi|319899061|ref|YP_004159154.1| transcription antitermination protein [Bartonella clarridgeiae 73]
gi|319403025|emb|CBI76580.1| transcription antitermination protein [Bartonella clarridgeiae 73]
Length = 182
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 105/175 (60%), Positives = 136/175 (77%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWYIVQ YSN EKK E+I + GLDHL +I +P ERVV +R+GRKV+SER+FF
Sbjct: 8 AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPIERVVEIRRGRKVDSERKFF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS+
Sbjct: 68 PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVEAPKSSM 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182
>gi|77359188|ref|YP_338763.1| transcription antitermination factor [Pseudoalteromonas
haloplanktis TAC125]
gi|76874099|emb|CAI85320.1| component in transcription antitermination; couples translation and
transcription [Pseudoalteromonas haloplanktis TAC125]
Length = 185
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S EK+ ++I + GL+ E+ +P+E V+ +R G+K SER+FFPG
Sbjct: 11 RWYVVQAFSGYEKRVAQTILEHIKIKGLEESFGEVLVPTEEVIEMRAGQKRKSERKFFPG 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI+ M DK +H + T +V+GF+ GT + P+P++ E E I+N+++ + P +
Sbjct: 71 YVLIQMDMNDKSWHLVNSTERVMGFIGGTSDRPAPISAKEAERILNRLQENAEAPKPATL 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182
>gi|56961918|ref|YP_173640.1| transcription antitermination protein NusG [Bacillus clausii
KSM-K16]
gi|56908152|dbj|BAD62679.1| transcriptional antitermination factor [Bacillus clausii KSM-K16]
Length = 178
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W++V YS E K ++ R+ + + + +P E ++ G+ R+
Sbjct: 1 MEKNWFVVHTYSGYENKVKANLEKRVESMEMTDHIFRVLVPVEEETEIKNGKTKQVSRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ E+E I+ Q+ V
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLMPDEVERILKQM--GVVEA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V GPFA F G ++ + EK ++ V V +FGR TPVEL + QVEKI
Sbjct: 119 QEEVDFELKESVKVKSGPFADFVGTIEEIQVEKRKLKVHVNMFGRETPVELEFGQVEKI 177
>gi|159896654|ref|YP_001542901.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
gi|159889693|gb|ABX02773.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
Length = 188
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++++ R+ + + + + +P+E + ++ G++ +++ FPGY
Sbjct: 17 WYVIHTYSGYENKVMQNLRHRIESMDMRNQIFRVVVPTEEEIEIKNGQRRTVQKKVFPGY 76
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ MTD ++ +++TP V F+G G PSP+ D E+ I+ Q+E + P V +E
Sbjct: 77 VLVQMAMTDDSWYVVRNTPGVTSFVGMGTKPSPLADEEVRFILKQMEE--EAPKVKVNYE 134
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+G+ V ++DGPF F G+V +DEE+ RV V V FGR PVEL + QV +++
Sbjct: 135 IGQTVKITDGPFTDFEGVVDEIDEERGRVRVLVSFFGREAPVELDFLQVIRVI 187
>gi|13470537|ref|NP_102105.1| transcription antitermination protein NusG [Mesorhizobium loti
MAFF303099]
gi|14021278|dbj|BAB47891.1| transcription antitermination protein [Mesorhizobium loti
MAFF303099]
Length = 175
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 98/175 (56%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD V+ +K+TPKV GFLG P P+T++E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174
>gi|16077169|ref|NP_387982.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. 168]
gi|221307913|ref|ZP_03589760.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. 168]
gi|221312234|ref|ZP_03594039.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221317168|ref|ZP_03598462.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221321431|ref|ZP_03602725.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. subtilis str. SMY]
gi|296333098|ref|ZP_06875552.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305672800|ref|YP_003864471.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii str. W23]
gi|321313772|ref|YP_004206059.1| transcription antitermination protein NusG [Bacillus subtilis BSn5]
gi|548391|sp|Q06795|NUSG_BACSU RecName: Full=Transcription antitermination protein nusG
gi|285628|dbj|BAA02560.1| transcription antitermination factor NusG [Bacillus subtilis]
gi|2632368|emb|CAB11877.1| transcription antitermination factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|291482473|dbj|BAI83548.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. natto BEST195]
gi|296149714|gb|EFG90609.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305411043|gb|ADM36161.1| transcription antitermination protein NusG [Bacillus subtilis
subsp. spizizenii str. W23]
gi|320020046|gb|ADV95032.1| transcription antitermination protein NusG [Bacillus subtilis BSn5]
Length = 177
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|32491266|ref|NP_871520.1| hypothetical protein WGLp517 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166473|dbj|BAC24663.1| nusG [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 181
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E K +S+ ++H E+ IP+E ++ +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFESKVAQSLKEHTKLYKMEHFFGEVMIPTEEILEIRHGKRKKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI VM D ++ +K+ PKV+GF+ GT + P+P++D EIE+I+ +++ +P
Sbjct: 67 GYVLIHMVMNDSSWYLVKNIPKVMGFVGGTSDKPAPISDKEIEYIVKRLQKIGNKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V DGPF+ FNG+V+ VD EK+R+ V V+IFGR TPVEL ++Q+EK
Sbjct: 127 LFEPGELVRVKDGPFSDFNGVVEEVDYEKNRLKVSVLIFGRATPVELDFSQLEK 180
>gi|41410209|ref|NP_963045.1| transcription antitermination protein NusG [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|118466107|ref|YP_883656.1| transcription antitermination protein NusG [Mycobacterium avium
104]
gi|254776958|ref|ZP_05218474.1| transcription antitermination protein NusG [Mycobacterium avium
subsp. avium ATCC 25291]
gi|41399043|gb|AAS06661.1| NusG [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167394|gb|ABK68291.1| transcription termination/antitermination factor NusG
[Mycobacterium avium 104]
Length = 256
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 67 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 126
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
+L++ +TD + +++TP V GF+G PS ++ ++ + A
Sbjct: 127 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGATKKVAKGAASTA 186
Query: 115 --------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 187 AAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 246
Query: 167 ELAYNQVEKI 176
EL ++QV K+
Sbjct: 247 ELTFSQVSKL 256
>gi|296138474|ref|YP_003645717.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162]
gi|296026608|gb|ADG77378.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162]
Length = 276
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 82 WYVIHTYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQQKRVNRKVLPGY 141
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP+T +E+ +
Sbjct: 142 ILVRMDLNDESWGAVRNTPGVTGFVGLTSKPSPLTMNEVVKFLLPESARTKPAKDKGAAA 201
Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
A Q P V FEVGE V V DGPFA+ + ++ E+ ++ V V IFGR
Sbjct: 202 DGAAAASGGAVSQGPAVEVDFEVGESVTVMDGPFATLPASISEINAEQRKLKVLVSIFGR 261
Query: 163 VTPVELAYNQVEKIV 177
TPVELA+NQVEKI+
Sbjct: 262 ETPVELAFNQVEKII 276
>gi|229815830|ref|ZP_04446154.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM
13280]
gi|229808525|gb|EEP44303.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM
13280]
Length = 179
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERR 59
M+ RWY+V YS E + + R+ G+ + +I IP+E V +++G K + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTEHVTELKEGGKRDEKDVK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + P
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGSSAPKR 120
Query: 120 S-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V EVG + V++GP A F+G V V E+ +V V ++IFGR TPVEL + Q+E I
Sbjct: 121 AVVDIEVGTSIRVTNGPLADFDGKVSEVMPEQGKVKVTLLIFGRETPVELGFEQIEVI 178
>gi|260469687|ref|ZP_05813849.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075]
gi|259028546|gb|EEW29860.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075]
Length = 175
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL+KA +TD V+ +K+TPKV GFLG P P+T++E + I+NQV+ V+RP S
Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174
>gi|297183429|gb|ADI19562.1| transcription antiterminator [uncultured gamma proteobacterium
HF0770_27E13]
Length = 177
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QVYSN EKK + + R + GL +I +P+E +V ++ G+K SER++
Sbjct: 1 MEYQWYVLQVYSNYEKKVLTMLEDRSKQLGLSEQFADIVVPTEEIVEMKGGQKKTSERKY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ + D+ +H + P V+GF+ GT E P+P++D E+ I+N+ E A P
Sbjct: 61 FPGYVLVNMNLNDETWHFVNSIPNVMGFIGGTSEKPAPISDREVMIILNKAEDAANAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V +GPF FNG+V+ V+ EKS++ V V I GR TPVEL +NQVEK
Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKSKLFVAVQILGRATPVELNFNQVEK 176
>gi|90407970|ref|ZP_01216143.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3]
gi|90310908|gb|EAS39020.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3]
Length = 182
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +++ + + ++ EI +P+E VV +R G+K SER+FFP
Sbjct: 8 MRWYVVQAFSGYEGRVQKTLIEHIKLNEMEEYFGEILVPTEEVVEMRAGQKRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+T +V+GF+ GT E P+P++ E+E+I+N+++ +V P
Sbjct: 68 GYVLVQMAMNDASWHLVKNTDRVMGFIGGTKERPAPISPKEVENILNRLQESVDSPRPRT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ F+G V+ VD +KSR+ V V IFGR TPV+L ++QVEK
Sbjct: 128 LFEAGQIVRVVDGPFSDFSGTVEEVDYDKSRLKVSVSIFGRATPVDLEFSQVEK 181
>gi|307251013|ref|ZP_07532938.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306856953|gb|EFM89084.1| Transcription antitermination protein nusG [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 187
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFP
Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++ E + I+N+V+ ++P
Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EFQPGENVHVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|153005087|ref|YP_001379412.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5]
gi|152028660|gb|ABS26428.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5]
Length = 179
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F
Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLEERVRQHSLQEQFGEVLIPMEVVQEMVKGEKKTSKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117
FPGY+L+ MT +H +K TPKV GF+G + P+ V D E++ + Q+ +P
Sbjct: 61 FPGYILVNMEMTLDTWHLVKGTPKVTGFVGNAKTPNEVPAVSDVEVQRLTTQISEGSLKP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE G++V V DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDQVRVIDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178
>gi|219871896|ref|YP_002476271.1| transcription antitermination protein NusG [Haemophilus parasuis
SH0165]
gi|219692100|gb|ACL33323.1| transcription antitermination protein NusG [Haemophilus parasuis
SH0165]
Length = 177
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW+++Q +S E + ++ + + E+ +P+E VV GR+ +ER+FFP
Sbjct: 1 MRWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++ E E I+N+V+ +P
Sbjct: 61 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQREAERILNRVQETADKPRHRT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 121 EFHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 174
>gi|210632466|ref|ZP_03297394.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279]
gi|210159561|gb|EEA90532.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279]
Length = 179
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERR 59
M+ RWY+V YS E + + R+ G+ + +I IP+ERV +++G K + +
Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTERVTELKEGGKRDEKDVK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + P
Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGGAAPKR 120
Query: 120 S-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V EVG V V GP + F+G V V E ++V V ++IFGR TPVEL+++Q+ I
Sbjct: 121 AVVDIEVGTSVRVISGPLSDFDGKVSEVMPEAAKVKVTLMIFGRETPVELSFDQITVI 178
>gi|89100743|ref|ZP_01173598.1| transcription antitermination protein NusG [Bacillus sp. NRRL
B-14911]
gi|89084560|gb|EAR63706.1| transcription antitermination protein NusG [Bacillus sp. NRRL
B-14911]
Length = 177
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ + + + +P E ++ G+K +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVETMAMQDKIFRVIVPEEEETDIKNGKKKVVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E+ I+ ++ V
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVNVILKRM--GVDEK 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V++GPFA+F G ++ +D++K+++ V V +FGR TPVEL + Q+EK+
Sbjct: 119 RVDIDFEIGETVKVNEGPFANFTGSIEEIDKDKAKIKVLVNMFGRETPVELDFTQIEKL 177
>gi|322513223|ref|ZP_08066349.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinobacillus ureae ATCC 25976]
gi|322120999|gb|EFX92840.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinobacillus ureae ATCC 25976]
Length = 187
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FFP
Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++ E E I+N+V+ ++P
Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREAERILNRVQETAEKPRHRN 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EYQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|325577261|ref|ZP_08147745.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus parainfluenzae ATCC 33392]
gi|301154974|emb|CBW14437.1| transcription termination factor [Haemophilus parainfluenzae T3T1]
gi|325160843|gb|EGC72964.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Haemophilus parainfluenzae ATCC 33392]
Length = 185
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 111/174 (63%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP
Sbjct: 10 KRWYVLQAFSGFESRVAITLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+G + P+P++ E + I+N++E + ++P
Sbjct: 70 GYVLVEMAMNDDTWHLVKSVPRVMGFIGGTPDKPAPISKREADLILNRLEQSAEKPRHRK 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 130 EYQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 183
>gi|254823017|ref|ZP_05228018.1| transcription antitermination protein NusG [Mycobacterium
intracellulare ATCC 13950]
Length = 267
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 78 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 137
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS +T ++ +
Sbjct: 138 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 197
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 198 TAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 257
Query: 167 ELAYNQVEKI 176
EL ++QV K+
Sbjct: 258 ELTFSQVSKL 267
>gi|308375217|ref|ZP_07443128.2| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu007]
gi|308376463|ref|ZP_07438920.2| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu008]
gi|308347108|gb|EFP35959.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu007]
gi|308351051|gb|EFP39902.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis SUMu008]
Length = 241
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 52 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 111
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS + ++ +
Sbjct: 112 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 171
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 172 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 231
Query: 167 ELAYNQVEKI 176
EL + QV KI
Sbjct: 232 ELTFGQVSKI 241
>gi|169830421|ref|YP_001716403.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
gi|169637265|gb|ACA58771.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 178
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +W++V YS E K ++ R+ ++ + I +P E + V+ G++ S+R+
Sbjct: 1 MSKQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYV+++ ++ D Y +++TP V GF+G+ G P P+TD+E I++Q+E P
Sbjct: 61 FPGYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEG--DEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE+V V GPF +F G V +V+ EK+++ V + +FGR TP+EL Y Q+EK+
Sbjct: 119 RIRIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177
>gi|54027090|ref|YP_121332.1| transcription antitermination protein NusG [Nocardia farcinica IFM
10152]
gi|54018598|dbj|BAD59968.1| putative transcription antitermination regulator [Nocardia
farcinica IFM 10152]
Length = 273
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ L+ + ++ +P+E V ++ G++ N R+ PGY
Sbjct: 84 WYVIHSYAGYENKVKANLETRVQNLDLEDYIFQVEVPTEEVTEIKNGQRKNVNRKVLPGY 143
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
+L++ + D+ + +++TP V GF+G PSP++ ++ + +
Sbjct: 144 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSIDDVVKFLVPASQQKKAPAAAAAAS 203
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 204 TETSTDVAPKPAIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 263
Query: 167 ELAYNQVEKI 176
ELA+ QV KI
Sbjct: 264 ELAFTQVAKI 273
>gi|160871908|ref|ZP_02062040.1| transcription termination/antitermination factor NusG
[Rickettsiella grylli]
gi|159120707|gb|EDP46045.1| transcription termination/antitermination factor NusG
[Rickettsiella grylli]
Length = 215
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+VQV S E+K ++++ R+ ++ L +I +P+E V+ +R+GRK + R+F+
Sbjct: 40 SKQWYVVQVRSGYERKVLDALNERIKQNDLTEKFGQIIVPTEEVIEIRQGRKRKTARKFY 99
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M + ++ ++ TP VI F+ GT + P P+ + E+ I+ +++ V +P
Sbjct: 100 PGYVLVEMDMGEDSWYLVQKTPGVIKFIGGTSDKPVPLGEREVSKILQRMQEGVDKPRPK 159
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FEVGE V V DGPFA FNG V+ V+ EK+R+ V V+IFGR TPVEL + QV+K
Sbjct: 160 VLFEVGEVVRVVDGPFADFNGEVEEVNYEKNRLRVSVIIFGRSTPVELEFGQVKK 214
>gi|258513627|ref|YP_003189849.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
gi|257777332|gb|ACV61226.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 175
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++
Sbjct: 1 MDKQWYVVHTYSGYENKVKANLEKRIESMNMEDKIFRILVPMEDEVEIKNGKKKISKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ D+E I+ Q+ ++ P +
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSKPIPLNDAEAAQIIKQM--GLEEPRAR 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE + V GPF F G ++ + +K +V V + +FGR TPVEL + Q+ ++
Sbjct: 119 YDYNTGEIIRVISGPFEGFEGHIEELLLDKEKVRVMISMFGRETPVELDFTQIARL 174
>gi|225874474|ref|YP_002755933.1| transcription termination/antitermination factor NusG
[Acidobacterium capsulatum ATCC 51196]
gi|225791805|gb|ACO31895.1| transcription termination/antitermination factor NusG
[Acidobacterium capsulatum ATCC 51196]
Length = 205
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 116/173 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ESI GR+ GL + + + IP+E V + G+K ER F PG
Sbjct: 31 KWYIIHAYSGFERKVKESIEGRVQAFGLQNKIGRVMIPTEPVTEIVNGKKRTIERVFLPG 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + + ++H IKDTP+V GFLGTG+ P ++++E+ I+ + + + ++P + F
Sbjct: 91 YVLVEMDLDNDLWHIIKDTPRVTGFLGTGDKPVALSEAEVSSILFRTDVSKEKPRLKIKF 150
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E E V +++GPFA+FNG+V +++E++ + V V IFGR TPVEL + +VEKI
Sbjct: 151 EKNESVRITEGPFANFNGVVDDINEDRETLKVMVTIFGRSTPVELEFAKVEKI 203
>gi|311086362|gb|ADP66443.1| transcription antitermination protein NusG [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
Length = 181
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +SI + + ++ L E+ +PS+ VV +R G++ SE +FFP
Sbjct: 7 KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRSGQRRKSEYKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ MTD +H I++ PKV+GF+G + PSP++D E+E I+N++ +P
Sbjct: 67 GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180
>gi|91774623|ref|YP_544379.1| transcription antitermination protein nusG [Methylobacillus
flagellatus KT]
gi|91708610|gb|ABE48538.1| transcription antitermination protein nusG [Methylobacillus
flagellatus KT]
Length = 179
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 118/177 (66%), Gaps = 2/177 (1%)
Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+ RWY VQ +S EK +++ R++RS + L +I +P E VV ++ G K +ER+
Sbjct: 1 MSGMRWYAVQAFSGFEKSVKKALEERIARSDIGDLFGDILVPVEEVVEMKNGVKSITERK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+PGYVL++ M+D+ +H +K TP+V F+ GT + P+P+ D E+E I+ +++ + P
Sbjct: 61 LYPGYVLVQMQMSDESWHLVKSTPRVTAFIGGTAQKPTPIKDKEVEIILQRMDESKSNPT 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F+ GE V V DGPF F+G V++V+ EKS++ V VVIFGR TPVEL ++QVEK
Sbjct: 121 QKLTFDKGESVRVIDGPFKDFSGSVEDVNYEKSKLRVSVVIFGRATPVELDFSQVEK 177
>gi|304415281|ref|ZP_07395976.1| transcription antitermination protein [Candidatus Regiella
insecticola LSR1]
gi|304282871|gb|EFL91339.1| transcription antitermination protein [Candidatus Regiella
insecticola LSR1]
Length = 181
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQV+S E + +S+ + ++ EI +P+E ++ +R G++ SER+FFP
Sbjct: 7 KRWYVVQVFSRFEGRVAQSLREYIKLKEVEDQFGEIMVPTEELLEMRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M + +H ++ P+V+GF+ GT + P+P++D E+ IM +++ +P
Sbjct: 67 GYVLVQMSMNETSWHLVRSVPRVMGFIGGTSDRPAPISDKEVNAIMARLQQIGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG V+ VD EK+R+ V V IFGR TPVEL ++Q+ K
Sbjct: 127 LFEPGESVRVNDGPFADFNGTVEKVDYEKNRLTVSVSIFGRATPVELDFSQIGK 180
>gi|15616668|ref|NP_239880.1| transcription antitermination protein NusG [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|219681425|ref|YP_002467810.1| transcription antitermination protein NusG [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219681981|ref|YP_002468365.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|257471100|ref|ZP_05635099.1| transcription antitermination protein NusG [Buchnera aphidicola
str. LSR1 (Acyrthosiphon pisum)]
gi|11133951|sp|P57151|NUSG_BUCAI RecName: Full=Transcription antitermination protein nusG
gi|25299609|pir||F84934 transcription antitermination protein nusG [imported] - Buchnera
sp. (strain APS)
gi|10038731|dbj|BAB12766.1| transcription antitermination protein nusG [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|219621714|gb|ACL29870.1| transcription antitermination protein NusG [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624268|gb|ACL30423.1| transcription antitermination protein NusG [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311085787|gb|ADP65869.1| transcription antitermination protein NusG [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|311086940|gb|ADP67020.1| transcription antitermination protein NusG [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
Length = 181
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +SI + + ++ L E+ +PS+ VV +R G++ SE +FFP
Sbjct: 7 KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKSEYKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ MTD +H I++ PKV+GF+G + PSP++D E+E I+N++ +P
Sbjct: 67 GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180
>gi|33520005|ref|NP_878837.1| transcription antitermination protein NusG [Candidatus Blochmannia
floridanus]
gi|33504351|emb|CAD83244.1| transcription antitermination protein NusG [Candidatus Blochmannia
floridanus]
Length = 181
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + ++ + + + +I +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFENQVARALKEHIKIKDMSSMFGDIMVPTEEVVEMRSGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ VM +H +K+ PKV+GF+G + P+P+ D E++ I+ +++ +P
Sbjct: 67 GYVLVQMVMNSSSWHLVKNVPKVLGFVGGTCDKPAPIGDKEVDAIICKLKQIGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L + QVEK
Sbjct: 127 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRSTPVDLDFAQVEK 180
>gi|284034041|ref|YP_003383972.1| NusG antitermination factor [Kribbella flavida DSM 17836]
gi|283813334|gb|ADB35173.1| NusG antitermination factor [Kribbella flavida DSM 17836]
Length = 400
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 104/189 (55%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E + ++ R++ ++ + EI +P+E V ++ G++ +R PGY
Sbjct: 212 WYVVHTYSGMENRVKGNLENRINSLNMEDYIFEIVVPTEEVAEIKNGQRRMVKRTVLPGY 271
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
VL++ +TD+ + T++ TP V GF+G + P P++ E+E ++
Sbjct: 272 VLVRMDLTDESWSTVRHTPSVTGFVGNSQKPVPLSLEEVEKMLAPAVVAAAEAAAAETGA 331
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ A ++ V F VG+ V V DGPFA+ + + ++ + R+ V IFGR TPVE
Sbjct: 332 APTKTAAKKKVEVADFGVGDSVMVVDGPFATLHATITEINADAQRIKALVEIFGRETPVE 391
Query: 168 LAYNQVEKI 176
L+++Q++K+
Sbjct: 392 LSFSQIQKV 400
>gi|28212185|ref|NP_783129.1| transcription antitermination protein NusG [Clostridium tetani E88]
gi|28204629|gb|AAO37066.1| transcription antitermination protein nusG [Clostridium tetani E88]
Length = 173
Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L + +I +P E V ++ G+K + ++ FP
Sbjct: 5 ARWYVVHTYSGYENKVKANLEKTIENRNLQDWIHDIRVPMEEQVEIKDGKKKIALKKVFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLIK VMTD ++ +++T V GF+G G P P+TD E+E + + V +
Sbjct: 65 GYVLIKMVMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDIEVESM------GISDEVIELD 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V V+ GP +F +++ + EK + V V +FGR TPVEL +NQ++K+
Sbjct: 119 IEIGESVKVTTGPLENFPAVIQEIFPEKHKAKVLVNMFGRETPVELDFNQIQKL 172
>gi|313635074|gb|EFS01424.1| transcription termination/antitermination factor NusG [Listeria
seeligeri FSL N1-067]
Length = 177
Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEIKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEK-- 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 119 RAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177
>gi|52783957|ref|YP_089786.1| transcription antitermination protein NusG [Bacillus licheniformis
ATCC 14580]
gi|163119187|ref|YP_077386.2| transcription antitermination protein NusG [Bacillus licheniformis
ATCC 14580]
gi|52346459|gb|AAU39093.1| NusG [Bacillus licheniformis ATCC 14580]
gi|145902690|gb|AAU21748.2| transcription antitermination factor [Bacillus licheniformis ATCC
14580]
Length = 177
Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++
Sbjct: 61 FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRM--GLEER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+
Sbjct: 119 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 177
>gi|78358031|ref|YP_389480.1| transcription antitermination protein nusG [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78220436|gb|ABB39785.1| transcription antitermination protein nusG [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 184
Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E++ ++I + L+ E+ +P+E+V+ + KG K S R+F+P
Sbjct: 11 ARWYIVHTYSGFEQRVEQTIRQMIRTGEAQDLIEEVVVPTEKVIELVKGEKRTSTRKFYP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+++K +MTD +H +++ +V GF+G P+P+ DSE E I+ +E+ ++P
Sbjct: 71 GYIMVKMIMTDFSWHLVQNINRVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFN 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 131 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVNK 183
>gi|319649130|ref|ZP_08003338.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2]
gi|317388830|gb|EFV69649.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2]
Length = 179
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 3 MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++
Sbjct: 63 FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRM--GLEER 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+
Sbjct: 121 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 179
>gi|304315927|ref|YP_003851072.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777429|gb|ADL67988.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 175
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E K ++ + L +L+ +I +P+E+VV ++ G+K + +R+ F
Sbjct: 6 SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQIVVPTEKVVEIKDGKKKSVDRKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K VM D+ ++ +++T V GF+G G P P+T++E+ + ++ +SV
Sbjct: 66 PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEAQTSV 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V GP +F G+V+ + ++ + V + +FGR TPVE + Q++KI
Sbjct: 120 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 174
>gi|298531097|ref|ZP_07018498.1| NusG antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509120|gb|EFI33025.1| NusG antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
Length = 197
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 114/173 (65%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWYI+ YS E++ +I + L+ EI +P+E+VV + KG+K S R+FFP
Sbjct: 24 PRWYIIHTYSGYEQRVERTIKEMMRTGQDKGLIEEIVVPTEQVVELVKGQKKTSTRKFFP 83
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K V D+ +H I+ PKV GF+G+ PSP+TD+E + I++ V++ ++P
Sbjct: 84 GYVLVKMVFNDESWHLIQSIPKVTGFIGSKNKPSPITDAEADKILSTVQSRKEQPRPKFH 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+ + V DGPFA+FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 144 FARGDEIRVVDGPFANFNGVVEDVNYDKGKLKVSVSIFGRQTPVELDFVQVSK 196
>gi|322434556|ref|YP_004216768.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9]
gi|321162283|gb|ADW67988.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9]
Length = 226
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 116/173 (67%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R+ L + + I IP+E V +R G+K ER F PG
Sbjct: 51 KWYIIHAYSGFERKVRESLESRIHAYNLQNRIGRIMIPTEPVTELRNGKKYTIERVFLPG 110
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + + ++H IK+TP+V GFLGTG++P +++ E+ I+ + + + +P + F
Sbjct: 111 YVLVEMELDNDLWHVIKNTPRVTGFLGTGDSPVALSEQEVSSILFRTDVSKDKPSMKIKF 170
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V +++GPFA+F+G+V +++E+K + V V IFGR TPVE+ +++V+K+
Sbjct: 171 AKGEQVRINEGPFANFSGVVDDLNEDKQTLKVMVSIFGRSTPVEIEFSKVDKM 223
>gi|21230352|ref|NP_636269.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66769654|ref|YP_244416.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. campestris str. 8004]
gi|188992866|ref|YP_001904876.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. campestris str. B100]
gi|18496618|gb|AAL74155.1|AF426391_2 NusG protein [Xanthomonas campestris pv. campestris]
gi|21111906|gb|AAM40193.1| transcription antitermination factor [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574986|gb|AAY50396.1| transcription antitermination factor [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734626|emb|CAP52836.1| transcription antitermination factor [Xanthomonas campestris pv.
campestris]
Length = 185
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 79/183 (43%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAVMTDK---------VYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ D+ +H +K+TPKV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHDEAGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|254361447|ref|ZP_04977587.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213]
gi|261491948|ref|ZP_05988525.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261496249|ref|ZP_05992654.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|153092957|gb|EDN73983.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213]
gi|261308080|gb|EEY09378.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261312415|gb|EEY13541.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 187
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FF
Sbjct: 11 SKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQFGEVLVPTEEVVENVGGKRRKTERKFF 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M D +H +K P+V+GF+ GT + P+P+T E + I+N+V+ ++P
Sbjct: 71 PGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTADRPAPITKREADRILNRVQETAEKPRHR 130
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE + V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 131 KEFQPGESILVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 185
>gi|313683397|ref|YP_004061135.1| transcription antitermination protein nusg [Sulfuricurvum kujiense
DSM 16994]
gi|313156257|gb|ADR34935.1| transcription antitermination protein nusG [Sulfuricurvum kujiense
DSM 16994]
Length = 176
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY +Q Y+ E+ +I ++ + L ++TE+ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHRWYSIQTYAGSERSVKAAIENIIAENNLQDVITEVIVPTEDVIEVKNGKKKITERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV ++ ++ H I+ P+V GF+G P+P++D++I I+++V P
Sbjct: 61 YSGYVFANMDLSIELQHRIQSLPRVAGFIGESNKPTPLSDNDIAVILDRVTNRSA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VFF+ GE V + DGPFA+F G V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 120 VFFDNGEMVRIVDGPFANFTGTVDEYDLEHGTLKLNVSIFGRSTPVDISYTQVEKII 176
>gi|15828020|ref|NP_302283.1| transcription antitermination protein NusG [Mycobacterium leprae
TN]
gi|221230497|ref|YP_002503913.1| transcription antitermination protein NusG [Mycobacterium leprae
Br4923]
gi|18202753|sp|Q9CBK0|NUSG_MYCLE RecName: Full=Transcription antitermination protein nusG
gi|13093573|emb|CAC30860.1| transcription antitermination protein nusG [Mycobacterium leprae]
gi|219933604|emb|CAR72002.1| transcription antitermination protein nusG [Mycobacterium leprae
Br4923]
Length = 228
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 39 WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS + ++ +
Sbjct: 99 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPSGSAKKDAKGAVSTA 158
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++R + V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 159 AAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 218
Query: 167 ELAYNQVEKI 176
EL ++QV KI
Sbjct: 219 ELTFSQVSKI 228
>gi|325675347|ref|ZP_08155031.1| transcription antitermination protein NusG [Rhodococcus equi ATCC
33707]
gi|325553318|gb|EGD22996.1| transcription antitermination protein NusG [Rhodococcus equi ATCC
33707]
Length = 265
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 104/189 (55%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 77 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111
+L++ + D+ + +++TP V GF+G PSP+T +E+ + +
Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196
Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
AA +PV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256
Query: 168 LAYNQVEKI 176
L++NQV+KI
Sbjct: 257 LSFNQVQKI 265
>gi|120402246|ref|YP_952075.1| transcription antitermination protein NusG [Mycobacterium
vanbaalenii PYR-1]
gi|119955064|gb|ABM12069.1| transcription antitermination protein nusG [Mycobacterium
vanbaalenii PYR-1]
Length = 266
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 75 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 135 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAATSAA 194
Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ ++RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR T
Sbjct: 195 AAASSEAGGIERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRET 254
Query: 165 PVELAYNQVEKI 176
PVEL +NQV KI
Sbjct: 255 PVELTFNQVAKI 266
>gi|16799355|ref|NP_469623.1| transcription antitermination protein NusG [Listeria innocua
Clip11262]
gi|16412707|emb|CAC95511.1| transcription antitermination factor [Listeria innocua Clip11262]
gi|313620919|gb|EFR92094.1| transcription termination/antitermination factor NusG [Listeria
innocua FSL S4-378]
gi|313625359|gb|EFR95151.1| transcription termination/antitermination factor NusG [Listeria
innocua FSL J1-023]
Length = 177
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEK-- 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 119 RAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177
>gi|319787937|ref|YP_004147412.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1]
gi|317466449|gb|ADV28181.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1]
Length = 185
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 80/183 (43%), Positives = 117/183 (63%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ G++ ++ +P+E VV +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVMHGMEDRFGDVLVPTEEVVEMRSGQKRRSERKFFP 61
Query: 63 GYVLIKAVMTD---------KVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ TD + +H +K+T KV+GF+G T + P P+ D E I+++V+
Sbjct: 62 GYVLVQIETTDDNGIPRIDSESWHLVKETSKVMGFIGGTADRPLPIRDEEAAAILDRVQE 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVIDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|319957698|ref|YP_004168961.1| transcription antitermination protein nusg [Nitratifractor
salsuginis DSM 16511]
gi|319420102|gb|ADV47212.1| transcription antitermination protein nusG [Nitratifractor
salsuginis DSM 16511]
Length = 176
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E+ +I + GL + ++ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHQWYAIQTYAGSERSVKRAIEQMVEDYGLQDRIDKVVVPTEEVIEVKNGQKKITERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV + ++H I+ P+V F+G + P+P+ +S+I+ I+ ++E + P
Sbjct: 61 YSGYVFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTPLNESDIKLILEKMENK-KPPRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V + DGPFA+F G+V+ D + ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 VDFEPGEMVRIIDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEIDYTQVEKII 176
>gi|33152872|ref|NP_874225.1| transcription antitermination protein NusG [Haemophilus ducreyi
35000HP]
gi|33149097|gb|AAP96614.1| transcription antitermination protein [Haemophilus ducreyi 35000HP]
Length = 187
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FFP
Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+ ++ E + I+N+V+ +P
Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAAISKREADRILNRVQETADKPRHRN 131
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EYHPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185
>gi|312141016|ref|YP_004008352.1| transcription antitermination protein nusg [Rhodococcus equi 103S]
gi|311890355|emb|CBH49673.1| transcription antitermination protein NusG [Rhodococcus equi 103S]
Length = 265
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 104/189 (55%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 77 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111
+L++ + D+ + +++TP V GF+G PSP+T +E+ + +
Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196
Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
AA +PV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256
Query: 168 LAYNQVEKI 176
L++NQV+KI
Sbjct: 257 LSFNQVQKI 265
>gi|302036653|ref|YP_003796975.1| transcription termination/antitermination protein NusG [Candidatus
Nitrospira defluvii]
gi|300604717|emb|CBK41049.1| Transcription termination/antitermination protein NusG [Candidatus
Nitrospira defluvii]
Length = 179
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+ WY++ Y+ E + S+ R S+ GL + ++ +P+E V+ ++ G++ S R+
Sbjct: 1 MSNKNWYVIHTYAGFEGRVKTSLLERASQMGLTERLGQVLVPTEDVIEIKDGKRRTSRRK 60
Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FFPGYVLI+ + D+ IK+TPKV GF+G G P+P++ E++ ++ QV+A P
Sbjct: 61 FFPGYVLIELEAPLADETLQMIKETPKVTGFVGGGAQPTPLSSEEVDSLLKQVDAGAAGP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F G+ V + DGPF FNG V +VD + SRV V V IFGR TPVEL + QVE+I
Sbjct: 121 REQVRFIKGDNVRIVDGPFLGFNGAVDDVDADHSRVKVFVSIFGRSTPVELGFLQVERI 179
>gi|118467542|ref|YP_885732.1| transcription antitermination protein NusG [Mycobacterium smegmatis
str. MC2 155]
gi|118168829|gb|ABK69725.1| transcription antitermination protein NusG [Mycobacterium smegmatis
str. MC2 155]
Length = 280
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 90 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 149
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 150 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQGAAKKPGKAAAAAA 209
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 210 SAASTEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 269
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 270 VELTFNQVAKI 280
>gi|51894226|ref|YP_076917.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM
14863]
gi|51857915|dbj|BAD42073.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM
14863]
Length = 176
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K ++ R+ + + + +P E + ++ G++ +R+ F
Sbjct: 3 EKHWYVVHTYSGYENKVKTNLEKRVESMEMQEKIFRVLVPMEDEIEIKDGKQKKVKRKVF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++ VM+D ++ +++TP V GF+G+G P P+T E+E I+ + V V
Sbjct: 63 PGYVLVEMVMSDDSWYVVRNTPGVTGFVGSGNKPIPLTPEEVEAILGRHGEDKPAHVV-V 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEV + V V GPF G++K + EK + V+V +FGR TPVE+ ++Q+E+I
Sbjct: 122 DFEVDQPVRVIAGPFKDHTGVIKEIFPEKGKARVQVTMFGRETPVEVDFSQIEEI 176
>gi|51244964|ref|YP_064848.1| transcription antitermination protein NusG [Desulfotalea
psychrophila LSv54]
gi|50876001|emb|CAG35841.1| probable transcription antitermination protein NusG [Desulfotalea
psychrophila LSv54]
Length = 177
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYI+Q +S E+K ++ R+ + GL+ +I +P+E+VV + KG + S ++F
Sbjct: 1 MAKQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKF 60
Query: 61 FPGYVLIKAVMTDKVYHTI-KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+LI +TD+ +HT+ ++ P+V+GF+G NP P++D E I+ +++ +RP
Sbjct: 61 FPGYMLINMELTDETWHTVHENMPRVVGFVGDDRNPMPLSDEEAAKIIGRIQEGSERPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V F+VGE V V DGPF++F G+V V +K RV V V IFGR TPVEL + QV
Sbjct: 121 KVIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174
>gi|110681150|ref|YP_684157.1| transcription antitermination protein NusG [Roseobacter
denitrificans OCh 114]
gi|109457266|gb|ABG33471.1| transcription antitermination protein NusG [Roseobacter
denitrificans OCh 114]
Length = 191
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 15 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 74
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 75 MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K
Sbjct: 135 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 189
>gi|294012699|ref|YP_003546159.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S]
gi|292676029|dbj|BAI97547.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S]
Length = 178
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 84/174 (48%), Positives = 109/174 (62%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL K M D +YH +K+TPKV GFLG+ P ++++E +AA P
Sbjct: 62 GYVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEAEAARYFGAQKAAEAAPKHKIN 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 122 VDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175
>gi|89071242|ref|ZP_01158421.1| transcription termination/antitermination factor NusG [Oceanicola
granulosus HTCC2516]
gi|89043228|gb|EAR49458.1| transcription termination/antitermination factor NusG [Oceanicola
granulosus HTCC2516]
Length = 177
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 175
>gi|114567855|ref|YP_755009.1| NusG antitermination factor [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338790|gb|ABI69638.1| transcription antitermination protein nusG [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 203
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K + R+ + + E+ IP E+ V + G++ + +R FPGY
Sbjct: 33 WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V++ +M D ++ ++ TP V GF+G+G P P+ EI+ I Q+ ++ + + E
Sbjct: 93 VIVNMIMDDDSWYVVRHTPGVTGFVGSGSKPIPLHQEEIDKIRRQMGLMEKKTMI-IDIE 151
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GE + V GPFA+F G+V+ + EK ++ V + +FGR TPVEL Y Q+EKI
Sbjct: 152 IGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEKI 203
>gi|269469123|gb|EEZ80671.1| hypothetical protein Sup05_0528 [uncultured SUP05 cluster
bacterium]
Length = 177
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY++ S E K +I ++R GL+ +V ++ IP+E+VV ++ G+K +ER+F
Sbjct: 1 MSKRWYVLHARSGYEAKVKIAIEEAVAREGLEDIVGDVMIPTEQVVELKDGQKKTAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+L+ +T+ + +K+T VIGF+ G+ PSP+T E++ IM +V+ +P
Sbjct: 61 FPGYMLVSMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKIMARVQEGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V ++ GE + V+DGPF F G V++VD EK+ + VEV+IFGR TPVEL ++QV K
Sbjct: 121 KVAYQPGEEILVTDGPFNEFTGTVESVDYEKNLLKVEVLIFGRTTPVELEFSQVAK 176
>gi|118616514|ref|YP_904846.1| transcription antitermination protein NusG [Mycobacterium ulcerans
Agy99]
gi|118568624|gb|ABL03375.1| transcription antitermination protein, NusG [Mycobacterium ulcerans
Agy99]
Length = 237
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS +T ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228
Query: 168 LAYNQVEKI 176
L +NQV KI
Sbjct: 229 LTFNQVSKI 237
>gi|56698338|ref|YP_168711.1| transcription termination/antitermination factor NusG [Ruegeria
pomeroyi DSS-3]
gi|56680075|gb|AAV96741.1| transcription termination/antitermination factor NusG [Ruegeria
pomeroyi DSS-3]
Length = 177
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRASVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLINTINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GERV V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEIGERVKVNDGPFEGFDGMVEGVDDDSQKLRVSVSIFGRETPVELDFTQVAK 175
>gi|113460339|ref|YP_718400.1| transcription antitermination protein NusG [Haemophilus somnus
129PT]
gi|112822382|gb|ABI24471.1| transcription antitermination protein nusG [Haemophilus somnus
129PT]
Length = 184
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP
Sbjct: 8 KRWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D + ++ P+V+GF+G + P+P++ E E I+N+V+ +P
Sbjct: 68 GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRK 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181
>gi|170718763|ref|YP_001783416.1| transcription antitermination protein NusG [Haemophilus somnus
2336]
gi|168826892|gb|ACA32263.1| NusG antitermination factor [Haemophilus somnus 2336]
Length = 184
Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP
Sbjct: 8 KRWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D + ++ P+V+GF+G + P+P++ E E I+N+V+ +P
Sbjct: 68 GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRK 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181
>gi|315301178|ref|ZP_07872442.1| transcription termination/antitermination factor NusG [Listeria
ivanovii FSL F6-596]
gi|313630448|gb|EFR98317.1| transcription termination/antitermination factor NusG [Listeria
ivanovii FSL F6-596]
Length = 177
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEK-- 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 119 RAEANFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177
>gi|297172924|gb|ADI23885.1| transcription antiterminator [uncultured gamma proteobacterium
HF4000_48J03]
Length = 177
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QVYSN EKK + + R GL +I +P+E +V ++ G+K SER+F
Sbjct: 1 MEYQWYVLQVYSNYEKKVLTMLQDRSKVLGLSEQFADIVVPTEEIVEMKGGQKKTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+ + D+ +H + P V+GF+ GT E P+P++D E+ I+N+ E A P
Sbjct: 61 FPGYVLVNMNLNDETWHFVNSIPNVMGFVGGTSEKPAPISDREVMIILNKAEDAANAPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ GE V V +GPF FNG+V+ V+ EK+++ V V I GR TPVEL +NQVEK
Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKNKLFVAVQILGRATPVELNFNQVEK 176
>gi|88856010|ref|ZP_01130672.1| transcription antitermination factor [marine actinobacterium
PHSC20C1]
gi|88814877|gb|EAR24737.1| transcription antitermination factor [marine actinobacterium
PHSC20C1]
Length = 315
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ EK+ +I R ++ V ++ +P E VV ++ G++ R PG
Sbjct: 127 KWYVIHSYAGFEKRVKHNIENRKVSMAMEDYVFQVEVPMEDVVEIKNGQRKLVNRVRIPG 186
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
YVL++ + + + ++ TP V GF+G NP P+ E +++ + V+ P +
Sbjct: 187 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPVPLRFEEAFNMLKSLVEIVEAPATKGSS 246
Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ FE+GE + + +G FA G + + E ++ V V +F R TPVE
Sbjct: 247 AKGKTAARSIPAEIDFEIGETITIKEGSFAGLPGSISEIKAESGKLIVLVSLFERETPVE 306
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 307 LSFDQVTKL 315
>gi|121534746|ref|ZP_01666567.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1]
gi|121306766|gb|EAX47687.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1]
Length = 176
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++ ++ G+++ + + +P E V ++ G+K ++R+ F
Sbjct: 4 EKKWYVIHTYSGYENKVKANLEKKVRSMGMENEIFRVLVPMEDEVEIKDGKKKVAKRKVF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++ ++ D+ ++ +++TP V GF+G+G P P++D+E+ HI+ + ++ V
Sbjct: 64 PGYVLVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSDAEVRHILKAM--GIEEIKPKV 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V ++ G F ++ V V ++ ++ V + +FGR TPVEL + QVEKI
Sbjct: 122 DISIGQLVRITSGAFENWTASVLEVYPDRGKLKVLINLFGRETPVELDFVQVEKI 176
>gi|46581327|ref|YP_012135.1| transcription antitermination protein NusG [Desulfovibrio vulgaris
str. Hildenborough]
gi|120601494|ref|YP_965894.1| NusG antitermination factor [Desulfovibrio vulgaris DP4]
gi|46450749|gb|AAS97395.1| transcription antitermination protein NusG [Desulfovibrio vulgaris
str. Hildenborough]
gi|120561723|gb|ABM27467.1| transcription antitermination protein nusG [Desulfovibrio vulgaris
DP4]
gi|311234987|gb|ADP87841.1| NusG antitermination factor [Desulfovibrio vulgaris RCH1]
Length = 183
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 107/173 (61%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+P
Sbjct: 10 ARWYIVHTYSGFENRVEQTIREMIRTGQSQDEIVEVVVPTEKVIELVKGEKRTSTRKFYP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K MTD +H ++ PKV GF+G P+P+ DSE E I+ +E+ ++P
Sbjct: 70 GYVMVKMFMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFN 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 130 FDRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 182
>gi|167855963|ref|ZP_02478710.1| transcription antitermination protein NusG [Haemophilus parasuis
29755]
gi|167852900|gb|EDS24167.1| transcription antitermination protein NusG [Haemophilus parasuis
29755]
Length = 192
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW+++Q +S E + ++ + + E+ +P+E VV GR+ +ER+FFP
Sbjct: 16 MRWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K P+V+GF+ GT + P+P++ SE E I+N+V+ +P
Sbjct: 76 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQSEAERILNRVQETADKPRHRT 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 136 EFHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 189
>gi|312869692|ref|ZP_07729839.1| transcription termination/antitermination factor NusG
[Lactobacillus oris PB013-T2-3]
gi|311094741|gb|EFQ53038.1| transcription termination/antitermination factor NusG
[Lactobacillus oris PB013-T2-3]
Length = 181
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E + ++ R G+ + + + E V V+ G+ F
Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMQDYIFRVVVAEETVREVKDGQAKEVTENTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ ++TP V GFLG+ G P+P+ E+E IM ++ V
Sbjct: 65 PGYVLVEMIMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPDEVERIMKRM--GADITV 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + + G+ V V GPFA G V VD EK ++ V V +FGR T EL ++QV+ +
Sbjct: 123 SDIDVKEGDTVKVIAGPFADLTGKVTEVDHEKQKLKVNVEMFGRETSAELGFDQVDTV 180
>gi|183980992|ref|YP_001849283.1| transcription antitermination protein, NusG [Mycobacterium marinum
M]
gi|183174318|gb|ACC39428.1| transcription antitermination protein, NusG [Mycobacterium marinum
M]
Length = 237
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS +T ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE
Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228
Query: 168 LAYNQVEKI 176
L +NQV KI
Sbjct: 229 LTFNQVSKI 237
>gi|116871629|ref|YP_848410.1| transcription antitermination protein NusG [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116740507|emb|CAK19627.1| transcription antitermination factor NusG [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 177
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEAERILKSMGMVEK-- 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 119 RAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177
>gi|126734758|ref|ZP_01750504.1| transcription antitermination protein NusG [Roseobacter sp. CCS2]
gi|126715313|gb|EBA12178.1| transcription antitermination protein NusG [Roseobacter sp. CCS2]
Length = 176
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + GL + E+ +P+E V+ +R+ +KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEAIRQKADEQGLSDQIDEVLVPTEEVIEIRRNKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VD+E R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRATPVELEFTQVSK 175
>gi|194364522|ref|YP_002027132.1| transcription antitermination protein NusG [Stenotrophomonas
maltophilia R551-3]
gi|194347326|gb|ACF50449.1| NusG antitermination factor [Stenotrophomonas maltophilia R551-3]
Length = 186
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 82/185 (44%), Positives = 123/185 (66%), Gaps = 10/185 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ R G++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+TP+V+GF+G T + P P+ DSE E I+N+V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQE 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQ 181
Query: 173 VEKIV 177
VEK V
Sbjct: 182 VEKAV 186
>gi|317153969|ref|YP_004122017.1| transcription termination/antitermination factor NusG
[Desulfovibrio aespoeensis Aspo-2]
gi|316944220|gb|ADU63271.1| transcription termination/antitermination factor NusG
[Desulfovibrio aespoeensis Aspo-2]
Length = 185
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 72/172 (41%), Positives = 112/172 (65%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV YS E++ +++ + L+ E+ +P+E+VV + KG + S R+F+PG
Sbjct: 13 RWYIVHTYSGFEQRVEQTVREMMRTGQDKGLIEEVVMPTEKVVEMVKGERKTSTRKFYPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y++IK +TD +H I+ P+V GF+G P+P+ DSE E+I+N +E+ ++P F
Sbjct: 73 YIMIKMTLTDDTWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFNF 132
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K
Sbjct: 133 ERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 184
>gi|222152115|ref|YP_002561275.1| transcription antitermination factor [Macrococcus caseolyticus
JCSC5402]
gi|222121244|dbj|BAH18579.1| transcription antitermination factor [Macrococcus caseolyticus
JCSC5402]
Length = 181
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY V YS E K +++ RL + + + IP E +++ G+K S ++ FP
Sbjct: 7 KHWYAVHTYSGYENKVKDNLEKRLESMNMQDQIFRVVIPEEEETTIKDGKKKTSLKKTFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E + I+ + +
Sbjct: 67 GYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEAKFILKSM--GMNEKTI 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V V+ GPF + G VK +D EK ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 DVEIELGEQVRVTSGPFTNQVGEVKEIDAEKYKLTVLVDMFGRETPVEVEFDQIEKL 181
>gi|285017308|ref|YP_003375019.1| transcription antitermination protein nusg [Xanthomonas albilineans
GPE PC73]
gi|283472526|emb|CBA15031.1| probable transcription antitermination protein nusg [Xanthomonas
albilineans]
Length = 185
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 79/183 (43%), Positives = 117/183 (63%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ R + ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRDEMQERFGDVLVPTEEVIEMRSGQKRRSERKFFP 61
Query: 63 GYVLIKAVMTDK---------VYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ D+ +H +K+TPKV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHDEGGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDQEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|269128551|ref|YP_003301921.1| NusG antitermination factor [Thermomonospora curvata DSM 43183]
gi|268313509|gb|ACY99883.1| NusG antitermination factor [Thermomonospora curvata DSM 43183]
Length = 238
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + +I R ++ + ++ +P V +++G++ + PGY
Sbjct: 60 WYVVHSYAGYENRVKANIETRTQSLNMEDYIFQVEVPQHEVTEIKQGKRQKVNEKMLPGY 119
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------RP 117
+L++ +TD+ + +++TP V GF+G PSP++ E+ ++ + +
Sbjct: 120 ILVRMELTDESWAAVRNTPGVTGFVGLLNKPSPLSLDEVAKLLAPPPEEEKGKAKEQTKV 179
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+V FEVGE V V DGPF + V ++ E+ ++ V V IFGR TPVEL++NQV KI
Sbjct: 180 TSTVEFEVGESVTVMDGPFQTLPATVSEINVEQQKLKVLVSIFGRETPVELSFNQVSKI 238
>gi|257791876|ref|YP_003182482.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|317489879|ref|ZP_07948372.1| transcription termination/antitermination factor NusG [Eggerthella
sp. 1_3_56FAA]
gi|325829776|ref|ZP_08163234.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|257475773|gb|ACV56093.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|316911034|gb|EFV32650.1| transcription termination/antitermination factor NusG [Eggerthella
sp. 1_3_56FAA]
gi|325487943|gb|EGC90380.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 176
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M +WY++ YS E K +++ R+ GL++ V I IP+E V +++ GR+V SE++
Sbjct: 1 MAKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFGIEIPTEMVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ + +++TP V GF+G NP+P+T E IM + + S
Sbjct: 61 VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGADGNPAPLTRDEYNKIMKRTSREAPKKTS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S EVG+ V V GP A F+G+V V + +V V V IFGR TPVEL+++QV KI
Sbjct: 121 S-SLEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVMVSIFGRETPVELSFDQVAKI 176
>gi|260432412|ref|ZP_05786383.1| transcription termination/antitermination factor NusG [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416240|gb|EEX09499.1| transcription termination/antitermination factor NusG [Silicibacter
lacuscaerulensis ITI-1157]
Length = 177
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V+SN EKK E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVFSNFEKKIAEQIRAAVAEQGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDKGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VDEE ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDEENQKLKVSVSIFGRETPVELDFTQVTK 175
>gi|190572932|ref|YP_001970777.1| transcription antitermination protein NusG [Stenotrophomonas
maltophilia K279a]
gi|254525223|ref|ZP_05137278.1| transcription termination/antitermination factor NusG
[Stenotrophomonas sp. SKA14]
gi|190010854|emb|CAQ44463.1| putative transcription antitermination protein [Stenotrophomonas
maltophilia K279a]
gi|219722814|gb|EED41339.1| transcription termination/antitermination factor NusG
[Stenotrophomonas sp. SKA14]
Length = 186
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/185 (44%), Positives = 123/185 (66%), Gaps = 10/185 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ R G++ ++ +P+E VV +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVVEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+TP+V+GF+G T + P P+ DSE E I+N+V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQE 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQ 181
Query: 173 VEKIV 177
VEK V
Sbjct: 182 VEKAV 186
>gi|302869988|ref|YP_003838625.1| transcription termination/antitermination factor NusG
[Micromonospora aurantiaca ATCC 27029]
gi|315501449|ref|YP_004080336.1| nusg antitermination factor [Micromonospora sp. L5]
gi|302572847|gb|ADL49049.1| transcription termination/antitermination factor NusG
[Micromonospora aurantiaca ATCC 27029]
gi|315408068|gb|ADU06185.1| NusG antitermination factor [Micromonospora sp. L5]
Length = 240
Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDFIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI-EHIMNQVEAAVQRPVSS 120
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + VE ++
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181
Query: 121 V---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240
>gi|114764160|ref|ZP_01443398.1| transcription termination/antitermination factor NusG [Pelagibaca
bermudensis HTCC2601]
gi|114543312|gb|EAU46328.1| transcription termination/antitermination factor NusG [Roseovarius
sp. HTCC2601]
Length = 177
Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +V+ + + P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVESILGRVQESDEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G++++VD++ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMIESVDDDNQRLRVAVSIFGRETPVELEFTQVSK 175
>gi|254438013|ref|ZP_05051507.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 307]
gi|198253459|gb|EDY77773.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 307]
Length = 188
Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 12 MAKRWYSVSVLSNFEKKIAETIRASVEEHGLEEQIGEVLVPTEEVIEVRRGKKVTAERRF 71
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +VE P +
Sbjct: 72 MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V VS+GPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 186
>gi|295106904|emb|CBL04447.1| transcription antitermination protein nusG [Gordonibacter pamelaeae
7-10-1-b]
Length = 180
Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M+ +WY++ YS E K +++ R+ GL++ V I IP+E V +++ GR+V SE++
Sbjct: 1 MSKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFAIEIPTEMVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D+ + +++TP V GF+G+ NP+P+T E IM +
Sbjct: 61 VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQGNPAPLTRDEYNKIMGMRSDKNRPGTP 120
Query: 120 SV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GP A F+G+V V + +V V V IFGR TPVEL+++Q+ KI
Sbjct: 121 KKTSSSIEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVLVSIFGRETPVELSFDQIAKI 180
>gi|294789162|ref|ZP_06754401.1| transcription termination/antitermination factor NusG [Simonsiella
muelleri ATCC 29453]
gi|294482903|gb|EFG30591.1| transcription termination/antitermination factor NusG [Simonsiella
muelleri ATCC 29453]
Length = 182
Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 85/182 (46%), Positives = 124/182 (68%), Gaps = 5/182 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY++Q YS EK +++ R++R +D +I +P E VV ++ GR++ SER+F
Sbjct: 1 MAKRWYVLQAYSGFEKNVQKTLKERIAREEMDEYFGQILVPVEEVVDIKNGRRMVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQV----EAAVQ 115
FPGYVLI+ MTD +H +K TP+V GF+ GT P P+T E++ +M QV E ++
Sbjct: 61 FPGYVLIEMEMTDSSWHLVKSTPRVNGFIGGTAHRPLPITQREVDAMMAQVGGSFEVGMK 120
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+P V FEVG++V V++GPFA F G+V++VD EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKPRVEFEVGQQVRVNEGPFADFTGLVEHVDYEKNKLRVTVQIFGRETPVELEFGQVEK 180
Query: 176 IV 177
+V
Sbjct: 181 VV 182
>gi|28377493|ref|NP_784385.1| transcription antitermination protein NusG [Lactobacillus plantarum
WCFS1]
gi|254555723|ref|YP_003062140.1| transcription antitermination protein NusG [Lactobacillus plantarum
JDM1]
gi|28270325|emb|CAD63226.1| transcription antitermination protein NusG [Lactobacillus plantarum
WCFS1]
gi|254044650|gb|ACT61443.1| transcription antitermination protein NusG [Lactobacillus plantarum
JDM1]
Length = 182
Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ F
Sbjct: 6 EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + +
Sbjct: 66 PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSARH-- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I
Sbjct: 124 TELDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181
>gi|84499877|ref|ZP_00998143.1| transcription termination/antitermination factor NusG [Oceanicola
batsensis HTCC2597]
gi|84391811|gb|EAQ04079.1| transcription termination/antitermination factor NusG [Oceanicola
batsensis HTCC2597]
Length = 177
Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAENGLEDEIEEVLVPTEEVIEIRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M+D YH I +V GFLG P P+ D+E+ I+ +V ++P +
Sbjct: 61 MPGYVLVRMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVASILGRVAEGEEQPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F G+++ VD++ R+ V V IFGR TPVEL Y QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEDFTGMIEEVDDDNQRLKVSVSIFGRETPVELEYTQVTK 175
>gi|148555476|ref|YP_001263058.1| transcription antitermination protein nusG [Sphingomonas wittichii
RW1]
gi|148500666|gb|ABQ68920.1| transcription antitermination protein nusG [Sphingomonas wittichii
RW1]
Length = 179
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K E+I +R GL+ LV + +P+E+V VR+G+K+ S+R+FFP
Sbjct: 2 ARWYIIHAYSGFENKVREAILADAARLGLEQLVEAVEVPTEKVTEVRRGKKITSDRKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRPVS 119
GYVL K M D VYH +K+TPKV GFLG+ P P++++E I+N + AA +
Sbjct: 62 GYVLAKLSMNDDVYHLVKNTPKVTGFLGSSGKPQPISEAEAARILNTKEEAAAAAPKTKL 121
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G++V V DGPFASFNG+V+ +D ++SRV V V IFGR TPVEL + QVE++
Sbjct: 122 KVDYEIGDQVKVLDGPFASFNGVVEELDFDRSRVKVSVSIFGRATPVELEFEQVERV 178
>gi|108797896|ref|YP_638093.1| transcription antitermination protein NusG [Mycobacterium sp. MCS]
gi|119866991|ref|YP_936943.1| transcription antitermination protein NusG [Mycobacterium sp. KMS]
gi|108768315|gb|ABG07037.1| transcription antitermination protein nusG [Mycobacterium sp. MCS]
gi|119693080|gb|ABL90153.1| transcription antitermination protein nusG [Mycobacterium sp. KMS]
Length = 270
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 80 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 139
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 140 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 199
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 200 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 259
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 260 VELTFNQVSKI 270
>gi|307297143|ref|ZP_07576957.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1]
gi|306877447|gb|EFN08677.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1]
Length = 178
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL K M D +YH +K+TPKV GFLG+ P +++++ + A P
Sbjct: 62 GYVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEADAARYFGAQKEAEAAPKHKIS 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 122 VDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175
>gi|289579158|ref|YP_003477785.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
gi|289528871|gb|ADD03223.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
Length = 176
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FP
Sbjct: 9 AKWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +MTD ++ +++T V GF+G G P P+T++E+ + ++ ++V
Sbjct: 69 GYVLVKMIMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVD 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI
Sbjct: 123 FNVKDTVRVISGPFENFIGVVEEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 176
>gi|311070748|ref|YP_003975671.1| transcription antitermination protein NusG [Bacillus atrophaeus
1942]
gi|310871265|gb|ADP34740.1| transcription antitermination protein NusG [Bacillus atrophaeus
1942]
Length = 177
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRM--GMDER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|159042815|ref|YP_001531609.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12]
gi|157910575|gb|ABV92008.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12]
Length = 177
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKHAVAEAGLEDDIEEVLVPTEEVIEVRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ MTD+ YH I +V GFLG P + D E+ I+N+VE + P S
Sbjct: 61 MPGYVLVRMEMTDQGYHLINSINRVTGFLGPQGRPMAMRDDEVNQILNRVEEGQEAPRSL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++GE+V V+DGPF F+G V+ VD++ +R+ V V IFGR TPVEL + QV K
Sbjct: 121 ITFDIGEQVNVTDGPFEGFSGSVEEVDDDNNRLKVTVSIFGRATPVELEFTQVTK 175
>gi|330470187|ref|YP_004407930.1| nusg antitermination factor [Verrucosispora maris AB-18-032]
gi|328813158|gb|AEB47330.1| nusg antitermination factor [Verrucosispora maris AB-18-032]
Length = 240
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI-EHIMNQVEAAVQRPVSS 120
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + VE ++
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181
Query: 121 V---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240
>gi|20808673|ref|NP_623844.1| transcription antitermination protein NusG [Thermoanaerobacter
tengcongensis MB4]
gi|20517309|gb|AAM25448.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
Length = 174
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V YS E K ++ + L + +I +P+E+V ++ G+K ER+ F
Sbjct: 6 TAKWYVVHTYSGYENKVKANLEKIIENRNLQDKILQIVVPTEKVTEIKDGKKKVVERKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +MTD+ ++ +++T V GF+G G P P+TD+E+ + ++ ++V
Sbjct: 66 PGYVLVKMIMTDETWYVVRNTRGVTGFVGPGSKPVPLTDAEVRAL------GIKDVSTAV 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ V E+ + V + +FGR TPVE Q++KI
Sbjct: 120 DLNVKDTVRVVSGPFENFIGVVQEVYPERQKAKVLISMFGRETPVEFDLVQLQKI 174
>gi|323705648|ref|ZP_08117222.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535125|gb|EGB24902.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 176
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E K ++ + L +L+ ++ +P+E+VV ++ G+K + +R+ F
Sbjct: 7 SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQVVVPTEKVVEIKDGKKKSVDRKVF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K VM D+ ++ +++T V GF+G G P P+T++E+ + ++ +SV
Sbjct: 67 PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEIQTSV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V GP +F G+V+ + ++ + V + +FGR TPVE + Q++KI
Sbjct: 121 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 175
>gi|29377206|ref|NP_816360.1| transcription antitermination protein NusG [Enterococcus faecalis
V583]
gi|227554214|ref|ZP_03984261.1| transcription antitermination protein NusG [Enterococcus faecalis
HH22]
gi|229544889|ref|ZP_04433614.1| transcription antitermination protein NusG [Enterococcus faecalis
TX1322]
gi|229549155|ref|ZP_04437880.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 29200]
gi|256854027|ref|ZP_05559392.1| transcription antitermination protein NusG [Enterococcus faecalis
T8]
gi|293384585|ref|ZP_06630451.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis R712]
gi|293386814|ref|ZP_06631385.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis S613]
gi|294779909|ref|ZP_06745291.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis PC1.1]
gi|300860945|ref|ZP_07107032.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TUSoD Ef11]
gi|307269242|ref|ZP_07550596.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4248]
gi|307271780|ref|ZP_07553051.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0855]
gi|307276965|ref|ZP_07558075.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2134]
gi|307278724|ref|ZP_07559791.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0860]
gi|307288652|ref|ZP_07568633.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0109]
gi|307290267|ref|ZP_07570183.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0411]
gi|312900090|ref|ZP_07759406.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0470]
gi|312902553|ref|ZP_07761759.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0635]
gi|312906411|ref|ZP_07765419.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 512]
gi|312951903|ref|ZP_07770791.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0102]
gi|312979430|ref|ZP_07791118.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 516]
gi|29344672|gb|AAO82430.1| transcription antitermination protein NusG [Enterococcus faecalis
V583]
gi|227176661|gb|EEI57633.1| transcription antitermination protein NusG [Enterococcus faecalis
HH22]
gi|229305709|gb|EEN71705.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 29200]
gi|229309990|gb|EEN75977.1| transcription antitermination protein NusG [Enterococcus faecalis
TX1322]
gi|256710970|gb|EEU26013.1| transcription antitermination protein NusG [Enterococcus faecalis
T8]
gi|291078131|gb|EFE15495.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis R712]
gi|291083817|gb|EFE20780.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis S613]
gi|294453021|gb|EFG21441.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis PC1.1]
gi|295113671|emb|CBL32308.1| transcription antitermination protein nusG [Enterococcus sp. 7L76]
gi|300849984|gb|EFK77734.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TUSoD Ef11]
gi|306498688|gb|EFM68189.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0411]
gi|306500406|gb|EFM69742.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0109]
gi|306504585|gb|EFM73788.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0860]
gi|306506388|gb|EFM75548.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2134]
gi|306511658|gb|EFM80657.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0855]
gi|306514461|gb|EFM83022.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4248]
gi|310627565|gb|EFQ10848.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 512]
gi|310630092|gb|EFQ13375.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0102]
gi|310634223|gb|EFQ17506.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0635]
gi|311287801|gb|EFQ66357.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis DAPTO 516]
gi|311292725|gb|EFQ71281.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0470]
gi|315025505|gb|EFT37437.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2137]
gi|315030451|gb|EFT42383.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4000]
gi|315032577|gb|EFT44509.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0017]
gi|315035100|gb|EFT47032.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0027]
gi|315143881|gb|EFT87897.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX2141]
gi|315148690|gb|EFT92706.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX4244]
gi|315151764|gb|EFT95780.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0012]
gi|315154307|gb|EFT98323.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0031]
gi|315155591|gb|EFT99607.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0043]
gi|315159600|gb|EFU03617.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0312]
gi|315162108|gb|EFU06125.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0645]
gi|315165297|gb|EFU09314.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1302]
gi|315168710|gb|EFU12727.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1341]
gi|315170473|gb|EFU14490.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1342]
gi|315174937|gb|EFU18954.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1346]
gi|315573767|gb|EFU85958.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0309B]
gi|315579638|gb|EFU91829.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0630]
gi|315580281|gb|EFU92472.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX0309A]
gi|323481651|gb|ADX81090.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis 62]
gi|327535945|gb|AEA94779.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis OG1RF]
gi|329578047|gb|EGG59461.1| transcription termination/antitermination factor NusG [Enterococcus
faecalis TX1467]
Length = 181
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K +I R G+ + + +P E V+ G++ + F
Sbjct: 5 ERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++
Sbjct: 65 PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ-- 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + +G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 123 SDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180
>gi|310817023|ref|YP_003964987.1| transcription termination/antitermination factor NusG
[Ketogulonicigenium vulgare Y25]
gi|308755758|gb|ADO43687.1| transcription termination/antitermination factor NusG
[Ketogulonicigenium vulgare Y25]
Length = 177
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I +++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAETIRTKVAEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK +H + +V GFLG P P+ D+E+ I+N+V+ + P
Sbjct: 61 MPGYVLVHMEMSDKGFHLVSSINRVTGFLGPQGRPMPMRDAEVNAILNRVQDVAETPRIQ 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+GE+V V+DGPF F+G V+ VD + R+ V V IFGR TPVEL + QV+K
Sbjct: 121 VRFEIGEKVKVNDGPFEGFDGTVEEVDGDAQRLKVTVSIFGRATPVELEFTQVQK 175
>gi|157690884|ref|YP_001485346.1| transcription antitermination protein NusG [Bacillus pumilus
SAFR-032]
gi|194017580|ref|ZP_03056191.1| transcription termination/antitermination factor NusG [Bacillus
pumilus ATCC 7061]
gi|157679642|gb|ABV60786.1| transcription antiterminator NusG [Bacillus pumilus SAFR-032]
gi|194010852|gb|EDW20423.1| transcription termination/antitermination factor NusG [Bacillus
pumilus ATCC 7061]
Length = 177
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRM--GLEER 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
>gi|323490600|ref|ZP_08095805.1| transcription antitermination protein NusG [Planococcus donghaensis
MPA1U2]
gi|323395692|gb|EGA88533.1| transcription antitermination protein NusG [Planococcus donghaensis
MPA1U2]
Length = 177
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G++ L+ + IP E+ + G+K R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVETMGMEDLIFRVIIPEEQETDFKDGKKRTVMRKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ D E+E I+ Q+ ++
Sbjct: 61 FPGYVLVELIMTDESWYVVRNTPGVTGFIGSSGGGAKPTPLLDEEVEFILKQMGMTERK- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F V + V V +GPFA+F G V+ +D+ K +V V + IFGR T +EL + QV+K+
Sbjct: 120 -VDIDFAVADTVEVMEGPFANFQGKVEEIDDTKGKVKVSIDIFGRETKMELDFEQVQKV 177
>gi|299541913|ref|ZP_07052236.1| transcription antitermination protein NusG [Lysinibacillus
fusiformis ZC1]
gi|298725651|gb|EFI66292.1| transcription antitermination protein NusG [Lysinibacillus
fusiformis ZC1]
Length = 177
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E + ++ R+ G+ + + +P ++ G+K R+
Sbjct: 1 MEKNWYVVHTYSGYENRVKANLEKRVETMGMQDKIFRVIVPEHEETEMKDGKKRTMMRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E + ++ Q+ +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQM--GMTDK 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V VGE V V +GPFA F G V+ +D EK ++ V V +FGR T +EL + QV+K+
Sbjct: 119 VVEVDITVGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVTVDMFGRETIMELDFEQVQKL 177
>gi|118602793|ref|YP_904008.1| transcription antitermination protein nusG [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567732|gb|ABL02537.1| transcription antitermination protein nusG [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 177
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY++ S E K +I + R GL+ LV E+ +P+E+VV ++ G+K +ER+F
Sbjct: 1 MSKKWYVLHARSGFEAKVKIAIEESVIREGLEDLVGEVFVPTEQVVELKDGQKKTAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+L+ +T+ + +K+T VIGF+G + PSP+T E++ I+ +V+ +P
Sbjct: 61 FPGYMLVNMELTEPSWLLVKNTNNVIGFIGSSSGKPSPITQREVDKILARVQEGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V ++ GE + V DGPF FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK
Sbjct: 121 KVAYQPGEEILVVDGPFNEFNGLVQAVDYEKNFLKVEVLIFGRSTSVELEFSQVEK 176
>gi|296168428|ref|ZP_06850308.1| transcription antitermination protein NusG [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896722|gb|EFG76357.1| transcription antitermination protein NusG [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 250
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 61 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 120
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS +T ++ +
Sbjct: 121 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 180
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV
Sbjct: 181 AAAEAGGLERPAVEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 240
Query: 167 ELAYNQVEKI 176
EL ++QV KI
Sbjct: 241 ELTFSQVSKI 250
>gi|304321357|ref|YP_003855000.1| transcription antitermination protein NusG [Parvularcula
bermudensis HTCC2503]
gi|303300259|gb|ADM09858.1| transcription antitermination protein NusG [Parvularcula
bermudensis HTCC2503]
Length = 178
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 88/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV YSN EKK E+I GL HL E+ +P+E VV +R+GRK+N+ERR+
Sbjct: 1 MDAKWYIVNAYSNFEKKVAEAIKQSAEEKGLSHLFEEVLVPTEEVVEIRRGRKINTERRY 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119
FPGYVL+K VM D+ +H + T KV GFLG+G+ P PV+ E++ I+ ++ Q P
Sbjct: 61 FPGYVLVKMVMNDQSFHVVNSTSKVTGFLGSGKKPIPVSQKEVDRILGTMDEQEQVPAKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ +++GE V V DGPFASF+G+V+++DEE +R+ V V IFGR TPVEL Y+QV+K
Sbjct: 121 AILYDIGETVKVVDGPFASFSGVVEDIDEENARLKVSVSIFGRATPVELEYSQVDK 176
>gi|225024700|ref|ZP_03713892.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC
23834]
gi|224942526|gb|EEG23735.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC
23834]
Length = 180
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 82/180 (45%), Positives = 123/180 (68%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++Q YS EK +++ R++R G++ L +I +P E VV ++ GRK SER+F
Sbjct: 1 MAKNWYVIQAYSGFEKNVQKTLKERIAREGMEGLFGQILVPVEEVVGIKNGRKTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQ---VEAAVQR 116
FPGYVLI+ MTD+ +H +K TP+V GF+ GT P P++ E++ I++Q V + ++
Sbjct: 61 FPGYVLIEMEMTDESWHLVKSTPRVNGFIGGTANRPLPISQREVDAIISQVLAVAGSEKK 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
P V F VG+++ VS+GPF+ FNG+V VD E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 PKPRVEFMVGQQIRVSEGPFSDFNGLVDVVDYERNKLRVLVQIFGRETPVELDFSQVEKI 180
>gi|319950479|ref|ZP_08024392.1| transcription antitermination protein NusG [Dietzia cinnamea P4]
gi|319435838|gb|EFV91045.1| transcription antitermination protein NusG [Dietzia cinnamea P4]
Length = 328
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 16/188 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E K ++ R G + + ++ +P E V+ G+K + R+ PGY
Sbjct: 140 WFVIHSYAGYENKVKANLETRAVTLGAEDKIFQVEVPVEEFTEVKNGQKKVANRKVLPGY 199
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQV---------- 110
VL++ + D+ + +++TP V GF+ G P+P++ S++ +
Sbjct: 200 VLVRMELDDESWGVVRNTPGVTGFVSATGGAAGKPTPLSLSDVAKFLAPKPEKKSAAAGT 259
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V F+VGE V V DGPFA+ + VD ++ V V IFGR TPVEL
Sbjct: 260 ADDQGFAPQAVEVEFQVGESVTVMDGPFATLPASISEVDPAAQKLKVLVSIFGRETPVEL 319
Query: 169 AYNQVEKI 176
+ QVEKI
Sbjct: 320 GFTQVEKI 327
>gi|110634174|ref|YP_674382.1| transcription antitermination protein NusG [Mesorhizobium sp. BNC1]
gi|9957208|gb|AAG09265.1| NusG [EDTA-degrading bacterium BNC1]
gi|110285158|gb|ABG63217.1| transcription antitermination protein nusG [Chelativorans sp. BNC1]
Length = 174
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 100/173 (57%), Positives = 130/173 (75%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YSN EKK ESI + + GL +L+ + +P+E+VV VR+GRKV++ER+FFP
Sbjct: 2 ARWYIVHAYSNFEKKVAESIEEQARQKGLSNLIENVVVPTEKVVEVRRGRKVDAERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+KA +TD V+ IK+TPKV GFLG P P+T++E + I+ QV+ V+RP SV
Sbjct: 62 GYVLVKADLTDAVFSLIKNTPKVTGFLG-DSKPVPITEAEAQRILTQVQEGVERPKPSVT 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR PV+L + QVEK
Sbjct: 121 FEIGEQVRVSDGPFASFNGFVQEVDEERSRLKVEVSIFGRAVPVDLEFGQVEK 173
>gi|238061137|ref|ZP_04605846.1| transcription termination/antitermination factor nusG
[Micromonospora sp. ATCC 39149]
gi|237882948|gb|EEP71776.1| transcription termination/antitermination factor nusG
[Micromonospora sp. ATCC 39149]
Length = 240
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 101/179 (56%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQIQAKVFPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP---- 117
+L++ +T + Y +++TP V GF+G + P+P++ E+ + Q+
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPTVETEQKKAKPE 181
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 240
>gi|126433559|ref|YP_001069250.1| transcription antitermination protein NusG [Mycobacterium sp. JLS]
gi|126233359|gb|ABN96759.1| transcription antitermination protein nusG [Mycobacterium sp. JLS]
Length = 271
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 81 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D+ + +++TP V GF+G PSP++ ++ +
Sbjct: 141 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 200
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP
Sbjct: 201 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 260
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 261 VELTFNQVSKI 271
>gi|83949812|ref|ZP_00958545.1| transcription termination/antitermination factor NusG [Roseovarius
nubinhibens ISM]
gi|83837711|gb|EAP77007.1| transcription termination/antitermination factor NusG [Roseovarius
nubinhibens ISM]
Length = 177
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVTEQALEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEETPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD++ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMVEEVDDDNQRLKVTVSIFGRETPVELEFTQVAK 175
>gi|289663461|ref|ZP_06485042.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289667608|ref|ZP_06488683.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 185
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 77/183 (42%), Positives = 119/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAVMTDK---------VYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ D+ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHDEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|159039849|ref|YP_001539102.1| NusG antitermination factor [Salinispora arenicola CNS-205]
gi|157918684|gb|ABW00112.1| NusG antitermination factor [Salinispora arenicola CNS-205]
Length = 242
Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 64 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQIQAKVFPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI-EHIMNQVEAAVQRPVSS 120
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + VEA ++
Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183
Query: 121 V---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 242
>gi|227519486|ref|ZP_03949535.1| transcription antitermination protein NusG [Enterococcus faecalis
TX0104]
gi|227073098|gb|EEI11061.1| transcription antitermination protein NusG [Enterococcus faecalis
TX0104]
Length = 181
Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K +I R G+ + + +P E V+ G++ + F
Sbjct: 5 ERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++
Sbjct: 65 PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ-- 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + +G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 123 SDLEVTLGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180
>gi|299137913|ref|ZP_07031093.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8]
gi|298599843|gb|EFI56001.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8]
Length = 217
Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 114/172 (66%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+ YS E+K ES+ R++ L+ V I IP+E +R G+K +R F PG
Sbjct: 43 KWYIIHAYSGFERKVKESLQSRVAAYHLEDRVGRIEIPTEPTTELRNGKKYTIDRVFLPG 102
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV ++ + + ++H +K+TP+V GFL TG+ P+ ++++E+ ++N+ +A ++P + F
Sbjct: 103 YVFVEMALDNDLWHVVKNTPRVTGFLQTGDQPNALSEAEVNAMLNRSDATKEKPKLKMKF 162
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GE+V +++GPFA+FNG V +++E+K + V V IFGR TP E++++ VEK
Sbjct: 163 SKGEQVRITEGPFANFNGAVDDINEDKQTLKVMVSIFGRPTPTEVSFSNVEK 214
>gi|262201104|ref|YP_003272312.1| transcription termination/antitermination factor NusG [Gordonia
bronchialis DSM 43247]
gi|262084451|gb|ACY20419.1| transcription termination/antitermination factor NusG [Gordonia
bronchialis DSM 43247]
Length = 299
Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G+ R+ PGY
Sbjct: 109 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 168
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ + D + +++TP V GF+G PSP++ +E+ +
Sbjct: 169 ILVRMDLNDDSWGAVRNTPGVTGFVGMNSKPSPLSLNEVLQFLMPRTEAKKPAAAKGAGA 228
Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+ AA V FEVGE V V DGPFA+ + V+ E+ +V V V IFGR TP
Sbjct: 229 EGVEAAAAAATATIEVDFEVGESVTVMDGPFATLPASISEVNAEQRKVKVLVSIFGRETP 288
Query: 166 VELAYNQVEKI 176
VELA+NQVEKI
Sbjct: 289 VELAFNQVEKI 299
>gi|256848158|ref|ZP_05553602.1| transcription termination/antitermination factor NusG
[Lactobacillus coleohominis 101-4-CHN]
gi|256715218|gb|EEU30195.1| transcription termination/antitermination factor NusG
[Lactobacillus coleohominis 101-4-CHN]
Length = 182
Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 102/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E + ++ R G++ + + +P E V +V+ G+ +E + F
Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEETVRTVKDGQAKETEEKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ IM ++
Sbjct: 65 PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRM--GADVAR 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VG+ + + GPFA G V VD +K +V+V++ +FGR T E+ ++Q++ +
Sbjct: 123 TDIDVNVGDSIKIIAGPFADLTGKVTAVDHDKMKVNVDIEMFGRQTSAEVGFDQIDTM 180
>gi|254453476|ref|ZP_05066913.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 238]
gi|198267882|gb|EDY92152.1| transcription termination/antitermination factor NusG
[Octadecabacter antarcticus 238]
Length = 188
Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 84/177 (47%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK ESI + GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 12 MAKRWYSVSVLSNFEKKIAESIRASVEEHGLEEQIGEVLVPTEEVIEIRRGKKVTAERRF 71
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +VE P +
Sbjct: 72 MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE+GE+V VS+GPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K V
Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEENQRLKVTVSIFGRATPVELEFTQVSKQV 188
>gi|21241725|ref|NP_641307.1| transcription antitermination protein NusG [Xanthomonas axonopodis
pv. citri str. 306]
gi|21107094|gb|AAM35843.1| transcription antitermination factor [Xanthomonas axonopodis pv.
citri str. 306]
Length = 185
Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRSGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|254512261|ref|ZP_05124328.1| transcription termination/antitermination factor NusG
[Rhodobacteraceae bacterium KLH11]
gi|221535972|gb|EEE38960.1| transcription termination/antitermination factor NusG
[Rhodobacteraceae bacterium KLH11]
Length = 177
Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDDIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P
Sbjct: 61 MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPKLM 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDFTQVTK 175
>gi|328958748|ref|YP_004376134.1| transcription antitermination protein NusG [Carnobacterium sp.
17-4]
gi|328675072|gb|AEB31118.1| transcription antitermination protein NusG [Carnobacterium sp.
17-4]
Length = 182
Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++I R + G+ + + IP E V+ G++ + ++ F
Sbjct: 7 AKQWYVLHTYSGYENKVKQNIESRANSMGMGDYIFRVVIPEEEEKEVKNGKEKINMKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +M+D ++ +++TP V GF+G+ G P+P+ +SEIE I+ ++ + +
Sbjct: 67 PGYVLVEMIMSDDSWYVVRNTPGVTGFVGSHGAGSKPAPLLNSEIEVILRRIGMSARHQ- 125
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V + +G F+ G + ++ EK+++ V V +FGR T EL + Q +K+
Sbjct: 126 -EINFEVGETVTIIEGAFSGLTGKITEIEMEKAKLKVNVEMFGRETSTELDFEQADKL 182
>gi|308179704|ref|YP_003923832.1| transcription antitermination protein NusG [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308045195|gb|ADN97738.1| transcription antitermination protein NusG [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 182
Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ F
Sbjct: 6 EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + +
Sbjct: 66 PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEETEQILHQLGMSARH-- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I
Sbjct: 124 TELDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181
>gi|271962615|ref|YP_003336811.1| transcription antiterminator-like protein [Streptosporangium roseum
DSM 43021]
gi|270505790|gb|ACZ84068.1| Transcription antiterminator-like protein [Streptosporangium roseum
DSM 43021]
Length = 266
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +I R ++ + ++ +P+ V V+ G++ + R PGY
Sbjct: 89 WYVIHSYAGYENRVKSNIETRTQSLNMEDYIFQVEVPTHHVTEVKSGKRQLVKERVLPGY 148
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------EAAVQRPV 118
VL++ +TD+ + +++TP V GF+G PSP++ E+ ++ ++ +
Sbjct: 149 VLVRMDLTDESWSAVRNTPGVTGFVGLSNKPSPLSLDEVAKLLAPEPSEEVKKSTAKASA 208
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++V FE+GE V V DGPFA+ V + E ++ V V IFGR TPVEL++NQV KI
Sbjct: 209 ATVDFEIGESVTVMDGPFATLPATVSEISAESQKLKVLVSIFGRETPVELSFNQVSKI 266
>gi|326390674|ref|ZP_08212229.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325993352|gb|EGD51789.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 177
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FP
Sbjct: 10 AKWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V
Sbjct: 70 GYVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVD 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI
Sbjct: 124 LNVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 177
>gi|269103670|ref|ZP_06156367.1| transcription antitermination protein NusG [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163568|gb|EEZ42064.1| transcription antitermination protein NusG [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 170
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 78/168 (46%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
Q +S E + +S+ + G++ E+ +P+E VV VR G++ SER+FFPGYVL++
Sbjct: 2 QAFSGFEGRVAQSLREHIKMHGMEEYFEEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQ 61
Query: 69 AVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
VM D+ +H ++ P+V+GF+G T + P+P++D E + I+N+++ A + PV FE GE
Sbjct: 62 MVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQKASESPVHKTVFEPGE 121
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V V+DGPFA FNG+V+ VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 122 VVRVTDGPFADFNGVVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEK 169
>gi|145596449|ref|YP_001160746.1| transcription termination/antitermination factor NusG [Salinispora
tropica CNB-440]
gi|145305786|gb|ABP56368.1| transcription antitermination protein nusG [Salinispora tropica
CNB-440]
Length = 242
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY
Sbjct: 64 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQVQAKVFPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEI-EHIMNQVEAAVQRPVSS 120
+L++ +T + Y +++TP V GF+G + P+P++ E+ + + VEA ++
Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183
Query: 121 V---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 242
>gi|260425721|ref|ZP_05779701.1| transcription termination/antitermination factor NusG [Citreicella
sp. SE45]
gi|260423661|gb|EEX16911.1| transcription termination/antitermination factor NusG [Citreicella
sp. SE45]
Length = 191
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 15 MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLQEQIDEVLVPTEEVIEVRRGKKVTTERRF 74
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +V+ P +
Sbjct: 75 MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVQETEDAPRTL 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GERV V+DGPF F+G+V+ VD++ R+ V V IFGR TPVEL + QV K
Sbjct: 135 IHFEIGERVKVNDGPFEGFDGMVEGVDDDNQRLRVSVSIFGRETPVELEFTQVSK 189
>gi|108804986|ref|YP_644923.1| transcription antitermination protein nusG [Rubrobacter
xylanophilus DSM 9941]
gi|108766229|gb|ABG05111.1| transcription antitermination protein nusG [Rubrobacter
xylanophilus DSM 9941]
Length = 176
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 109/175 (62%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ R+ GL EI IP+E+V+ ++ G+KV + R FP
Sbjct: 2 KKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSV 121
GY+L+ M D + I+ TP V +G+G+ P+P++ +E+E +++ E ++ ++V
Sbjct: 62 GYILVNVEMNDDTWRVIRQTPGVTQIVGSGDKPTPLSRAEVERLLHPEEPEKREKVKATV 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++GE V V GP + F G + +++ ++S+V V V IFGR TPVEL++NQV K+
Sbjct: 122 DFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAKL 176
>gi|149203664|ref|ZP_01880633.1| transcription termination/antitermination factor NusG [Roseovarius
sp. TM1035]
gi|149142781|gb|EDM30823.1| transcription termination/antitermination factor NusG [Roseovarius
sp. TM1035]
Length = 177
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVTENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175
>gi|125975201|ref|YP_001039111.1| transcription antitermination protein nusG [Clostridium
thermocellum ATCC 27405]
gi|256003137|ref|ZP_05428129.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|281419560|ref|ZP_06250571.1| NusG antitermination factor [Clostridium thermocellum JW20]
gi|125715426|gb|ABN53918.1| transcription antitermination protein nusG [Clostridium
thermocellum ATCC 27405]
gi|255992828|gb|EEU02918.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|281406782|gb|EFB37049.1| NusG antitermination factor [Clostridium thermocellum JW20]
gi|316939365|gb|ADU73399.1| NusG antitermination factor [Clostridium thermocellum DSM 1313]
Length = 177
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K ++ + L + +I +P E + ++ G+K S ++ F
Sbjct: 9 EAKWYVVHTYSGYENKVKANLEKIVENRNLQDYILDIVVPMEEQIEIKDGKKKASLKKVF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +M D+ ++ +++T V GF+G G P+TD EI + V+ +
Sbjct: 69 PGYVLVKMIMNDESWYVVRNTRGVTGFVGPGSKAVPLTDEEIRAM------GVEEFAPVL 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVG+ V V GP +F GIV+ ++ EK +V V V +FGR TPVEL +Q++KI
Sbjct: 123 DYEVGDNVRVVSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELHQIQKI 177
>gi|294668063|ref|ZP_06733182.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292601870|gb|EFF45698.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 185
Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|254294452|ref|YP_003060475.1| NusG antitermination factor [Hirschia baltica ATCC 49814]
gi|254042983|gb|ACT59778.1| NusG antitermination factor [Hirschia baltica ATCC 49814]
Length = 180
Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats.
Identities = 96/180 (53%), Positives = 125/180 (69%), Gaps = 4/180 (2%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M RWYIV YSN EKK SI + + L+HL EI +P+E VVSV +G+K +ERR
Sbjct: 1 MAKARWYIVHAYSNFEKKVAASIREQAAMQELEHLFEEIEVPTEEVVSVVRGKKKTTERR 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP 117
+FPGYVL+K +TD YH +K+TPKV GFLG G+ P PV SE++ IM Q A +RP
Sbjct: 61 YFPGYVLVKMQLTDAAYHLVKETPKVTGFLGADGGKKPLPVPQSEVDRIMGQASEAAERP 120
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +V +EVGE+V V+DGPFASF G V++VD E +R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 EIPNVIYEVGEKVKVTDGPFASFEGAVEDVDLEAARLKVTVSIFGRETPVDLEFGQVEKL 180
>gi|254467081|ref|ZP_05080492.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium Y4I]
gi|206687989|gb|EDZ48471.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium Y4I]
Length = 177
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVETPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ ++ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQKLKVTVSIFGRETPVELDFAQVTK 175
>gi|256825902|ref|YP_003149862.1| transcription antitermination protein nusG [Kytococcus sedentarius
DSM 20547]
gi|256689295|gb|ACV07097.1| transcription antitermination protein nusG [Kytococcus sedentarius
DSM 20547]
Length = 296
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E V ++ +K ER PGY
Sbjct: 106 WYVLHTYAGYEKRVKANLEQRAVSMNMEDYIFQAEVPMETVTEIKNNQKKTVERVRMPGY 165
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
L++ +T+ + T+++TP V GF+G +P P++ E+ ++ +Q
Sbjct: 166 CLVRMDLTNASWGTVRNTPGVTGFVGNATDPVPLSLGEVFDMLAPDFESQAQAAAGSQEG 225
Query: 112 AAVQRPV------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A P V FEVGE V V +GPF + + ++ E +V V V IFGR TP
Sbjct: 226 ATTVEPKSGTPQMPLVDFEVGEAVTVMEGPFETLPATISEINVEARKVQVLVSIFGRETP 285
Query: 166 VELAYNQVEKI 176
VELA+NQV KI
Sbjct: 286 VELAFNQVAKI 296
>gi|218886545|ref|YP_002435866.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218757499|gb|ACL08398.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 184
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 109/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW+IV YS E++ ++I + L+ E+ +P+E+V+ + KG K S R+F+P
Sbjct: 11 ARWFIVHTYSGFEQRVEQTIREMIRTGQAQGLIEEVVVPTEKVIELVKGEKRTSTRKFYP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K MTD +H ++ PKV GF+G P+P+ DSE E I+ +E+ ++P
Sbjct: 71 GYVMVKMAMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILTMMESRQEQPRPKFN 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 131 FERGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 183
>gi|296268525|ref|YP_003651157.1| NusG antitermination factor [Thermobispora bispora DSM 43833]
gi|296091312|gb|ADG87264.1| NusG antitermination factor [Thermobispora bispora DSM 43833]
Length = 246
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + ++I R+ ++ + ++ +P+ V ++ G+K + R PGY
Sbjct: 67 WYVVHSYAGYENRVKQNIESRIISLNMEDYIYQVEVPTHTVTEIKGGKKTPVKERVLPGY 126
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQR 116
VL++ V+TD+ + +++TP V GF+G PSP+ ++ ++ +A+ +
Sbjct: 127 VLVRMVLTDESWAAVRNTPGVTGFVGLSNKPSPLGLDDVARLLAPEPEEEEAAAKASAKS 186
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V FEVGE V V DGPFA+ V V E ++ V V IFGR TPVEL+++QV K+
Sbjct: 187 AAPAVEFEVGESVTVMDGPFATLPATVSEVSPESQKLKVLVSIFGRETPVELSFDQVAKL 246
>gi|78046542|ref|YP_362717.1| transcription antitermination protein NusG [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|78034972|emb|CAJ22617.1| transcription antitermination factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 185
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEGGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|163739418|ref|ZP_02146828.1| NusG antitermination factor [Phaeobacter gallaeciensis BS107]
gi|161387171|gb|EDQ11530.1| transcription antitermination protein [Phaeobacter gallaeciensis
BS107]
Length = 177
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|167036788|ref|YP_001664366.1| transcription antitermination protein NusG [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039507|ref|YP_001662492.1| transcription antitermination protein NusG [Thermoanaerobacter sp.
X514]
gi|256752774|ref|ZP_05493619.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300915242|ref|ZP_07132557.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|307267205|ref|ZP_07548711.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|307725166|ref|YP_003904917.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
gi|320115210|ref|YP_004185369.1| transcription termination/antitermination factor NusG
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166853747|gb|ABY92156.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
gi|166855622|gb|ABY94030.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748335|gb|EEU61394.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300888966|gb|EFK84113.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|306917784|gb|EFN48052.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|307582227|gb|ADN55626.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
gi|319928301|gb|ADV78986.1| transcription termination/antitermination factor NusG
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 174
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FP
Sbjct: 7 AKWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V
Sbjct: 67 GYVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI
Sbjct: 121 LNVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 174
>gi|325916475|ref|ZP_08178744.1| transcription antitermination protein nusG [Xanthomonas vesicatoria
ATCC 35937]
gi|325537264|gb|EGD08991.1| transcription antitermination protein nusG [Xanthomonas vesicatoria
ATCC 35937]
Length = 185
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 77/183 (42%), Positives = 119/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|27904552|ref|NP_777678.1| transcription antitermination protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|31340244|sp|Q89B15|NUSG_BUCBP RecName: Full=Transcription antitermination protein nusG
gi|27903949|gb|AAO26783.1| transcription antitermination protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 181
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + +SI + ++ L E+ +PSE V+ ++ G++ SE +FFP
Sbjct: 7 KRWYVLQAFSGFEGRIAQSIREHVKLKKMEKLFGEVMVPSEEVIEIKAGQRKKSEYKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ +M + +H ++ P+V+GF+G + P P+TD E+ I+N+++ +P
Sbjct: 67 GYVLIQMIMNESSWHLVRSIPRVLGFIGGTPDRPLPITDQEVNTIINKLKQVGDKPRPKT 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF+ FNGIV+ VD EK+R+ V V IFGR TPVEL ++QV+K
Sbjct: 127 LFEPGETVRVNDGPFSDFNGIVEEVDYEKNRLKVSVSIFGRSTPVELDFSQVKK 180
>gi|163740207|ref|ZP_02147601.1| transcription termination/antitermination factor NusG [Phaeobacter
gallaeciensis 2.10]
gi|161386065|gb|EDQ10440.1| transcription termination/antitermination factor NusG [Phaeobacter
gallaeciensis 2.10]
Length = 177
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|166710815|ref|ZP_02242022.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 185
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|323700795|ref|ZP_08112707.1| NusG antitermination factor [Desulfovibrio sp. ND132]
gi|323460727|gb|EGB16592.1| NusG antitermination factor [Desulfovibrio desulfuricans ND132]
Length = 181
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 113/173 (65%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E++ +++ + L+ E+ +P+E++V + KG + S R+F+P
Sbjct: 8 ARWYIVHTYSGFEQRVEQTVREMMRTGQDKGLIEEVVMPTEKIVEMVKGERKTSTRKFYP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY++IK ++TD +H I+ P+V GF+G P+P+ DSE E+I+N +E+ ++P
Sbjct: 68 GYIMIKMILTDDSWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFN 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K
Sbjct: 128 FERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 180
>gi|300769745|ref|ZP_07079627.1| transcription termination/antitermination factor NusG
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|300492653|gb|EFK27839.1| transcription termination/antitermination factor NusG
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
Length = 182
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ F
Sbjct: 6 EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + +
Sbjct: 66 PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSARH-- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I
Sbjct: 124 TELDVEVGEQVTIIDGAFSGGSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181
>gi|84625056|ref|YP_452428.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188575476|ref|YP_001912405.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|84368996|dbj|BAE70154.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188519928|gb|ACD57873.1| transcription termination/antitermination factor NusG [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 185
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 75/183 (40%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T +V+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|158319530|ref|YP_001512037.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs]
gi|158139729|gb|ABW18041.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs]
Length = 172
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E K +I + G++ ++ E+ +P+E + ++ G+K E + FP
Sbjct: 5 ARWYVMHTYSGHENKVKMNIEKMVENRGMEDIILEVKVPTEEKIEIKNGKKKVKESKLFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K MTD+ ++ +++T V GF+G P P+TD EI+ + V+ P +
Sbjct: 65 GYVLVKMFMTDESWYLVRNTRGVTGFVGPSSKPIPLTDQEIKSM------GVEEPRIEID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VGE + V GPF +F G + +++ EK + V + +FGR TPVEL ++Q+EKI
Sbjct: 119 VKVGESIKVISGPFETFIGTIDHINLEKQTLKVRISMFGRETPVELEFDQIEKI 172
>gi|302336397|ref|YP_003801604.1| transcription antitermination protein nusG [Olsenella uli DSM 7084]
gi|301320237|gb|ADK68724.1| transcription antitermination protein nusG [Olsenella uli DSM 7084]
Length = 182
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M RWY+V YS E K + R+ GL+ + +I IP+E V ++ G++ E +
Sbjct: 1 MAKRWYVVHTYSGYENKVKTDLEHRIETYGLEDQIVDIQIPTEEVTEIKDGGKRETKESK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQ 115
FPGYVL++ + D + +++TP V GF+G P+P+ SE IM + +
Sbjct: 61 VFPGYVLVRMDVDDNSWAVVRNTPGVTGFVGIDGKPTPLRRSEFNKIMRRTNPRGAQEPK 120
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
R + EVG+ V V GP A F+G+V V E +V V + IFGR TPVEL +Q+
Sbjct: 121 RTTMTTDLEVGQAVKVVSGPLADFDGLVSEVMPEAGKVKVMLTIFGRETPVELTLDQIAT 180
Query: 176 I 176
I
Sbjct: 181 I 181
>gi|326203307|ref|ZP_08193172.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782]
gi|325986565|gb|EGD47396.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782]
Length = 179
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG
Sbjct: 13 KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 72
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P++D E++ + V+ V +
Sbjct: 73 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDDEVKAM------GVEEFAPEVDY 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EV + V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI
Sbjct: 127 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 179
>gi|77462246|ref|YP_351750.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
2.4.1]
gi|126461108|ref|YP_001042222.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|126461122|ref|YP_001042236.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|221638100|ref|YP_002524362.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
KD131]
gi|77386664|gb|ABA77849.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
2.4.1]
gi|126102772|gb|ABN75450.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|126102786|gb|ABN75464.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
ATCC 17029]
gi|221158881|gb|ACL99860.1| Transcription antitermination protein nusG [Rhodobacter sphaeroides
KD131]
Length = 177
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+++ YH I +V GFLG P P+ DSE+ I+N+VE +P S
Sbjct: 61 MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +++GE V V+DGPF F+G+V++VDEE SR+ V V IFGR TPVEL + QV K
Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175
>gi|257063593|ref|YP_003143265.1| transcription antitermination protein nusG [Slackia
heliotrinireducens DSM 20476]
gi|256791246|gb|ACV21916.1| transcription antitermination protein nusG [Slackia
heliotrinireducens DSM 20476]
Length = 178
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M +WY++ YS E K +++ R+ GL+ + +I IP+E V +++ GR+V SE++
Sbjct: 1 MAKKWYVLHTYSGYENKVKQTLESRVEMMGLEDSIVDIQIPTEMVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-V 118
FPGYVL++ M ++ + +++TP V GF+G P P+T E IM + P
Sbjct: 61 VFPGYVLVRMEMNNQNWSVVRNTPGVTGFVGGQGEPEPLTREEYNKIMKRTSVKAGAPKK 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+S EVG+ V V+ GP A F+G V V E +V V V IFGR TPVEL+++QV +I
Sbjct: 121 TSTSLEVGQSVKVTSGPLADFDGTVSEVSPEAGKVKVLVSIFGRETPVELSFDQVARI 178
>gi|163745521|ref|ZP_02152881.1| transcription antitermination protein NusG [Oceanibulbus indolifex
HEL-45]
gi|161382339|gb|EDQ06748.1| transcription antitermination protein NusG [Oceanibulbus indolifex
HEL-45]
Length = 177
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRASVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+++ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVADGPFEDFDGMIEEVDEDNQRLKVSVSIFGRETPVELEFTQVNK 175
>gi|254477580|ref|ZP_05090966.1| transcription termination/antitermination factor NusG [Ruegeria sp.
R11]
gi|214031823|gb|EEB72658.1| transcription termination/antitermination factor NusG [Ruegeria sp.
R11]
Length = 177
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEHGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|126737141|ref|ZP_01752876.1| transcription termination/antitermination factor NusG [Roseobacter
sp. SK209-2-6]
gi|126721726|gb|EBA18429.1| transcription termination/antitermination factor NusG [Roseobacter
sp. SK209-2-6]
Length = 177
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175
>gi|223041760|ref|ZP_03611953.1| transcription antitermination protein NusG [Actinobacillus minor
202]
gi|240948037|ref|ZP_04752454.1| transcription antitermination protein NusG [Actinobacillus minor
NM305]
gi|223017444|gb|EEF15862.1| transcription antitermination protein NusG [Actinobacillus minor
202]
gi|240297653|gb|EER48130.1| transcription antitermination protein NusG [Actinobacillus minor
NM305]
Length = 186
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q +S E + ++ + ++ E+ +P+E ++ G++ +ER+FFP
Sbjct: 10 KRWYVLQAFSGFENRVAVTLREYIKLHHMEEQFGEVLVPTEEIIENVGGKRRKTERKFFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D + ++ P+V+GF+ GT + P+P++ E + I+N+V+ +P
Sbjct: 70 GYVLVEMEMNDYTWQLVRSVPRVMGFIGGTADKPAPISKKEADRILNRVQETADKPRHRN 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE V V++GPFA F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 130 EYFPGESVRVTEGPFADFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 183
>gi|256830550|ref|YP_003159278.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028]
gi|256579726|gb|ACU90862.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028]
Length = 180
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 107/173 (61%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E++ ++I + LV E+ +P+E+VV + KG+K S R+F+P
Sbjct: 7 ARWYIIHTYSGFEQRVEQTIKEMIRTGQAKGLVEEVIVPTEKVVELIKGQKRTSTRKFYP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY ++K V TD +H I+ PKV GF+G P P+TD E + I+ +E ++P
Sbjct: 67 GYAMVKMVFTDDSWHMIQSIPKVTGFIGGKSRPVPLTDKEAQRILATIETRKEQPRPKFH 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPFA+FN V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 127 FERGDDVRVIDGPFANFNATVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 179
>gi|58583220|ref|YP_202236.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58427814|gb|AAW76851.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 203
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 75/183 (40%), Positives = 120/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 20 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 79
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T +V+GF+G T + P P+ D E + I+ +V+
Sbjct: 80 GYVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQD 139
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 140 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 199
Query: 173 VEK 175
VEK
Sbjct: 200 VEK 202
>gi|313812129|gb|EFS49843.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL025PA1]
Length = 303
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------------NQV 110
VL++ +TD + ++ TP V GF+G P P+T E+ ++
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKTS 237
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 298 NQIEKI 303
>gi|85706805|ref|ZP_01037896.1| transcription termination/antitermination factor NusG [Roseovarius
sp. 217]
gi|85668598|gb|EAQ23468.1| transcription termination/antitermination factor NusG [Roseovarius
sp. 217]
Length = 177
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + +GL+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVVENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175
>gi|262197203|ref|YP_003268412.1| NusG antitermination factor [Haliangium ochraceum DSM 14365]
gi|262080550|gb|ACY16519.1| NusG antitermination factor [Haliangium ochraceum DSM 14365]
Length = 189
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 106/172 (61%), Gaps = 1/172 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V ++ E++ E++ R G + EI +P+ V+ V KG++ S ++FFPG
Sbjct: 18 KWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ ++ TD VYH I++TPKV GF+G G P PV +SEI I N + +P V F
Sbjct: 78 YIFVQMEFTDSVYHLIRNTPKVTGFVG-GNTPQPVPESEISVIHNTMSDNHSKPRPKVMF 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E G+ V V+DGPFASF V+ V +K ++ V V IFGR TPVEL + QVEK
Sbjct: 137 EQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEK 188
>gi|146278581|ref|YP_001168740.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17025]
gi|145556822|gb|ABP71435.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
ATCC 17025]
Length = 178
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+++ YH I +V GFLG P P+ DSE+ I+N+VE +P S
Sbjct: 61 MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +++GE V V+DGPF F+G+V++VDEE SR+ V V IFGR TPVEL + QV K
Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175
>gi|289424853|ref|ZP_06426635.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK187]
gi|289427697|ref|ZP_06429409.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J165]
gi|295131414|ref|YP_003582077.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK137]
gi|289154816|gb|EFD03499.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK187]
gi|289159188|gb|EFD07380.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J165]
gi|291377288|gb|ADE01143.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes SK137]
gi|313763077|gb|EFS34441.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL013PA1]
gi|313773029|gb|EFS38995.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL074PA1]
gi|313794084|gb|EFS42106.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA1]
gi|313802424|gb|EFS43649.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA2]
gi|313807843|gb|EFS46327.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL087PA2]
gi|313812044|gb|EFS49758.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL083PA1]
gi|313816875|gb|EFS54589.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL059PA1]
gi|313819205|gb|EFS56919.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL046PA2]
gi|313819756|gb|EFS57470.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL036PA1]
gi|313823873|gb|EFS61587.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL036PA2]
gi|313827234|gb|EFS64948.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL063PA1]
gi|313828436|gb|EFS66150.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL063PA2]
gi|313831107|gb|EFS68821.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL007PA1]
gi|313833490|gb|EFS71204.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL056PA1]
gi|313838124|gb|EFS75838.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL086PA1]
gi|314914564|gb|EFS78395.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA4]
gi|314919192|gb|EFS83023.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL050PA1]
gi|314920626|gb|EFS84457.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL050PA3]
gi|314925735|gb|EFS89566.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL036PA3]
gi|314931464|gb|EFS95295.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL067PA1]
gi|314957024|gb|EFT01130.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL027PA1]
gi|314957838|gb|EFT01941.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL002PA1]
gi|314960679|gb|EFT04780.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL002PA2]
gi|314963365|gb|EFT07465.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL082PA1]
gi|314969740|gb|EFT13838.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL037PA1]
gi|314974289|gb|EFT18385.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL053PA1]
gi|314976940|gb|EFT21035.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL045PA1]
gi|314979899|gb|EFT23993.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL072PA2]
gi|314985803|gb|EFT29895.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA1]
gi|314988414|gb|EFT32505.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA2]
gi|314988838|gb|EFT32929.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL005PA3]
gi|315077100|gb|EFT49175.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL053PA2]
gi|315079791|gb|EFT51767.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL078PA1]
gi|315084901|gb|EFT56877.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL027PA2]
gi|315087231|gb|EFT59207.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL002PA3]
gi|315088964|gb|EFT60940.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL072PA1]
gi|315096811|gb|EFT68787.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL038PA1]
gi|315100103|gb|EFT72079.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL059PA2]
gi|315100572|gb|EFT72548.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL046PA1]
gi|315109344|gb|EFT81320.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL030PA2]
gi|327325647|gb|EGE67445.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL096PA2]
gi|327328241|gb|EGE70008.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL096PA3]
gi|327445317|gb|EGE91971.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL043PA1]
gi|327446958|gb|EGE93612.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL043PA2]
gi|327449046|gb|EGE95700.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL013PA2]
gi|327451392|gb|EGE98046.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL092PA1]
gi|327452608|gb|EGE99262.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL087PA3]
gi|327457651|gb|EGF04306.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL083PA2]
gi|328751908|gb|EGF65524.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL087PA1]
gi|328756946|gb|EGF70562.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL020PA1]
gi|328759041|gb|EGF72657.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL025PA2]
gi|328762258|gb|EGF75750.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL099PA1]
Length = 303
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------------NQV 110
VL++ +TD + ++ TP V GF+G P P+T E+ ++
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKTS 237
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 298 NQIEKI 303
>gi|84515191|ref|ZP_01002554.1| transcription termination/antitermination factor NusG [Loktanella
vestfoldensis SKA53]
gi|84511350|gb|EAQ07804.1| transcription termination/antitermination factor NusG [Loktanella
vestfoldensis SKA53]
Length = 176
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + GL + E+ +P+E V+ VR+ +KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEAIRAKAEEKGLSDQIDEVLVPTEEVIEVRRNKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDSPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEYVDEEHQRLKVTVSIFGRATPVELEFTQVSK 175
>gi|163732875|ref|ZP_02140320.1| transcription antitermination protein NusG [Roseobacter litoralis
Och 149]
gi|161394235|gb|EDQ18559.1| transcription antitermination protein NusG [Roseobacter litoralis
Och 149]
Length = 177
Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+DK YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 175
>gi|457386|gb|AAA27500.1| transcription factor [Thermus thermophilus]
Length = 244
Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+G +K ++
Sbjct: 61 MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 120
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 121 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 180
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++Q
Sbjct: 181 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 240
Query: 173 VEK 175
V K
Sbjct: 241 VVK 243
>gi|313835994|gb|EFS73708.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL037PA2]
gi|314929670|gb|EFS93501.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL044PA1]
gi|314970507|gb|EFT14605.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL037PA3]
gi|328906260|gb|EGG26035.1| transcription antitermination protein NusG [Propionibacterium sp.
P08]
Length = 300
Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 115 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 174
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------------NQV 110
VL++ +TD + ++ TP V GF+G P P+T E+ ++
Sbjct: 175 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVIAKASRENADKAP 234
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V +EVGE V ++DGPFA + ++ RV V I GR TPV+L +
Sbjct: 235 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRVKALVEILGRSTPVDLEF 294
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 295 NQIEKI 300
>gi|212637940|ref|YP_002314460.1| transcription antitermination protein NusG [Anoxybacillus
flavithermus WK1]
gi|212559420|gb|ACJ32475.1| Transcription antiterminator NusG [Anoxybacillus flavithermus WK1]
Length = 177
Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G+ + + +P E + G+K +++
Sbjct: 1 MEKNWYVIHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEETDTKGGKKKVVKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ + E+ I+ ++ V
Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLEEEVSAILKRM--GVDLI 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+ E V + +GPFA+F G ++ ++ +K +V V V +FGR TPVEL ++Q+EKI
Sbjct: 119 ELDFDFELNEAVRIKEGPFANFVGTIQEIEMDKQKVTVLVDMFGRETPVELDFSQIEKI 177
>gi|126732293|ref|ZP_01748093.1| transcription termination/antitermination factor NusG [Sagittula
stellata E-37]
gi|126707162|gb|EBA06228.1| transcription termination/antitermination factor NusG [Sagittula
stellata E-37]
Length = 182
Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 6 MAKRWYSVSVLSNFEKKIAEQIRTSVEEQGLQDQIDEVMVPTEEVIEVRRGKKVTTERRF 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I + +V GFLG P P+ D+E+E I+ +V+ + + P +
Sbjct: 66 MPGYVLVHMEMSDRGYHLISNINRVTGFLGPQGRPMPMRDAEVEAILGRVQESDEAPRTL 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GERV V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 126 IHFEIGERVKVNDGPFEGFDGMVEGVDEDNQRLSVSVSIFGRETPVELDFTQVSK 180
>gi|50843343|ref|YP_056570.1| transcription antitermination protein NusG [Propionibacterium acnes
KPA171202]
gi|50840945|gb|AAT83612.1| transcription antitermination protein NusG [Propionibacterium acnes
KPA171202]
gi|315106013|gb|EFT77989.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL030PA1]
Length = 303
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------------NQV 110
VL++ +TD + ++ TP V GF+G P P+T E+ ++
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKTS 237
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 298 NQIEKI 303
>gi|84685454|ref|ZP_01013352.1| transcription termination/antitermination factor NusG
[Maritimibacter alkaliphilus HTCC2654]
gi|84666611|gb|EAQ13083.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2654]
Length = 177
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKTSVAEAGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVEEGVEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL Y QV K
Sbjct: 121 ITFEIGEKVAVTDGPFEGFDGMVEGVDEDNQRLKVSVSIFGRATPVELEYTQVSK 175
>gi|323465883|gb|ADX69570.1| Transcription antitermination protein nusG [Lactobacillus
helveticus H10]
Length = 199
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 21 KQWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ E++ ++ ++P
Sbjct: 81 GYVLVEMVMTDESWYIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 140
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 141 N--FEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195
>gi|311744840|ref|ZP_07718636.1| transcription termination/antitermination factor NusG
[Aeromicrobium marinum DSM 15272]
gi|311311957|gb|EFQ81878.1| transcription termination/antitermination factor NusG
[Aeromicrobium marinum DSM 15272]
Length = 251
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS EK+ ++ R++ + + E+ +P+E V V+ G++ +R PGY
Sbjct: 64 WYVIHTYSGMEKRVKANLENRITSLNAEDFIFEVVVPTEEVAEVKNGQRKLVKRTVLPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G P P++ +E+E ++
Sbjct: 124 VLVRMDLTDESWGVVRHTPSVTGFVGNAHQPVPLSLAEVEQMLAPAVEAEVAATAAAESP 183
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A V F G+ V V DGPFA+ + + ++ + RV V IFGR TPVEL
Sbjct: 184 DSQPAKTAKVEFADFSAGDSVMVVDGPFATLHATITEINVDSQRVKALVEIFGRETPVEL 243
Query: 169 AYNQVEKI 176
+++Q++K+
Sbjct: 244 SFSQIQKV 251
>gi|242278647|ref|YP_002990776.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638]
gi|242121541|gb|ACS79237.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638]
Length = 186
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 111/173 (64%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E++ +++ + + L+ E+ +P+E+VV + KG K S R+F+P
Sbjct: 13 ARWYIVHTYSGFEQRVEQTVREMMRTGQDNGLIEEVVVPTEKVVELVKGEKRTSTRKFYP 72
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV+IK +M D+ +H I+ P+V GF+G P+P+ DSE I++ +E ++P
Sbjct: 73 GYVMIKMIMEDESWHLIQSIPRVTGFIGGKNRPTPMRDSEAAKILSLMEDRQEQPRPKFN 132
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V DGPF+ FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 133 FDRGDEVRVIDGPFSGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 185
>gi|117927503|ref|YP_872054.1| transcription antitermination protein nusG [Acidothermus
cellulolyticus 11B]
gi|117647966|gb|ABK52068.1| transcription antitermination protein nusG [Acidothermus
cellulolyticus 11B]
Length = 228
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 6/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V Y+ E +A ++ R+ ++ + ++ +P E VV ++ G++ +R FPG
Sbjct: 50 QWYVVHTYAGYENRAKANLENRIQSLNMEDYIYQVEVPQEEVVEIKNGKRQIVKRNIFPG 109
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIM-----NQVEAAVQRP 117
YVL++ +TD+ + ++ TP V GF+G + P+P+T E+ + ++ EAA
Sbjct: 110 YVLVRMELTDESWAAVRYTPAVTGFVGPSASKPAPLTLDEVLRFLAPAVKSRKEAAAAAT 169
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVGE V V DGPFA+ + ++ ++ ++ V V IFGR TPVEL++NQV KI
Sbjct: 170 PKIVDFEVGESVTVMDGPFATLPATISEINPDQQKLKVLVSIFGRETPVELSFNQVAKI 228
>gi|294142945|ref|YP_003558923.1| transcription antitermination protein NusG [Shewanella violacea
DSS12]
gi|293329414|dbj|BAJ04145.1| transcription antitermination protein NusG [Shewanella violacea
DSS12]
Length = 185
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/172 (41%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVLKTLNEYIQMYKMEHYFGEILVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P+++ E + I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISNVEADRILQRLQENTESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
FE GE V V+DGPFA F G V+ VD EK+RV V V+IFGR TP+E+ ++Q+
Sbjct: 129 MFEPGEVVSVADGPFADFRGAVEQVDYEKNRVKVSVMIFGRSTPLEVDFSQI 180
>gi|327333165|gb|EGE74892.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL097PA1]
Length = 303
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-------QVEAAVQRP 117
VL++ +TD + ++ TP V GF+G P P+T E+ ++ E A + P
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKTP 237
Query: 118 VSS-------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+EVGE V ++DGPFA + ++ R+ V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 298 NQIEKI 303
>gi|314924045|gb|EFS87876.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL001PA1]
gi|314965017|gb|EFT09116.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL082PA2]
gi|315093850|gb|EFT65826.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL060PA1]
gi|315104068|gb|EFT76044.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL050PA2]
gi|327326459|gb|EGE68248.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL103PA1]
Length = 303
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------------NQV 110
VL++ +TD + ++ TP V GF+G P P+T E+ ++
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVLARVSRENADKAP 237
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 298 NQIEKI 303
>gi|303327278|ref|ZP_07357720.1| transcription termination/antitermination factor NusG
[Desulfovibrio sp. 3_1_syn3]
gi|302863266|gb|EFL86198.1| transcription termination/antitermination factor NusG
[Desulfovibrio sp. 3_1_syn3]
Length = 190
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
PRWYIV YS E++ ++I L+ E+ +P+E+V+ + + G K + R+F+
Sbjct: 16 PRWYIVHTYSGFEQRVQKTINEMSRTGQDQGLIQEVVVPTEKVIELAKGGEKRTTTRKFY 75
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+++ +MTD +H ++ PKV GF+G P+P+ DSE E I+ +E + P
Sbjct: 76 PGYVMVRMIMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILALMETRQETPRPKF 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 136 NFDRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 189
>gi|303247802|ref|ZP_07334071.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ]
gi|302490886|gb|EFL50785.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ]
Length = 187
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 106/173 (61%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+P
Sbjct: 14 ARWYIVHTYSGFENRVEQTIREMMRTGQDGGSIEEVVVPTEKVIELVKGEKRTSTRKFYP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P
Sbjct: 74 GYVMVKMSMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYH 133
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 134 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186
>gi|258406197|ref|YP_003198939.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692]
gi|257798424|gb|ACV69361.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692]
Length = 179
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 111/174 (63%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWYIV +S E++ ++I + + L+ E+ +P+E+VV + KG+K S R+F+
Sbjct: 5 SARWYIVHAFSGYEQRVEKTIAEMIRSGQGEGLIEEVIVPTEKVVEMVKGQKKTSTRKFY 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K ++ DK +H I+ PKV GF+G + P P+T E + I+ +E+ ++P
Sbjct: 65 PGYVLVKMILNDKTWHLIQSIPKVTGFVGGQKRPKPLTQKEADQILQTIESRKEQPRPKF 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF+ FNG V+ V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 125 HFERGDEVRVIDGPFSGFNGEVEEVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 178
>gi|282855233|ref|ZP_06264565.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J139]
gi|282581821|gb|EFB87206.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes J139]
gi|314983092|gb|EFT27184.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA3]
gi|315090636|gb|EFT62612.1| transcription termination/antitermination factor NusG
[Propionibacterium acnes HL110PA4]
Length = 303
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------------NQV 110
VL++ +TD + ++ TP V GF+G P P+T E+ ++
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVIKMLTPSVLARVSRENADKAP 237
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297
Query: 171 NQVEKI 176
NQ+EKI
Sbjct: 298 NQIEKI 303
>gi|83854994|ref|ZP_00948524.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. NAS-14.1]
gi|83842837|gb|EAP82004.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. NAS-14.1]
Length = 177
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGEKVKVTDGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177
>gi|320352905|ref|YP_004194244.1| transcription antitermination protein nusG [Desulfobulbus
propionicus DSM 2032]
gi|320121407|gb|ADW16953.1| transcription antitermination protein nusG [Desulfobulbus
propionicus DSM 2032]
Length = 187
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYIV ++ E K ++ R+ +G + L EI +P+E+VV + KG + SER+F
Sbjct: 1 MAKSWYIVHTHTGFENKVKSTLEERIKLAGQEDLFGEILVPTEQVVEMVKGARKTSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-----------ENPSPVTDSEIEHIMNQ 109
FPGY+L+ M ++ +HT+++TP+V GF+G + +TD E + I+ +
Sbjct: 61 FPGYILVNMEMNERSWHTVQETPRVTGFVGINMSQAGADKDIYKKIPSLTDKEADKILGR 120
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ +P V F G+ V V DGPFA+F G+++ V +K RV V V IFGR TPVEL
Sbjct: 121 IADGANKPKPKVVFAEGDAVRVIDGPFANFQGVIEEVFPDKGRVRVMVSIFGRSTPVELE 180
Query: 170 YNQVEK 175
Y QV K
Sbjct: 181 YIQVSK 186
>gi|103486929|ref|YP_616490.1| NusG antitermination factor [Sphingopyxis alaskensis RB2256]
gi|98977006|gb|ABF53157.1| transcription antitermination protein nusG [Sphingopyxis alaskensis
RB2256]
Length = 178
Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K +S+ R GL V + +P E V V++G+KV +ER+FFP
Sbjct: 2 ARWYIIHAYSGFENKVRDSVLAEAERMGLTDFVEAVEVPVETVTEVKRGKKVQAERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL K MTD VYH +K+TPKV GFLG+ P ++++E I+N E A RP +
Sbjct: 62 GYVLAKLTMTDDVYHLVKNTPKVTGFLGSSGKPQAISEAEAARILNSKEEAAARPKTEIR 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G++V V +GPFASFNG+V+ +D +K+RV V V IFGR TPVEL + QVE++
Sbjct: 122 VDYEIGDQVKVLEGPFASFNGVVEELDFDKARVKVSVSIFGRATPVELDFEQVERM 177
>gi|221632693|ref|YP_002521914.1| transcription termination/antitermination factor NusG
[Thermomicrobium roseum DSM 5159]
gi|221156617|gb|ACM05744.1| transcription termination/antitermination factor NusG
[Thermomicrobium roseum DSM 5159]
Length = 198
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ R+ + V E+ IP + + +R G++ +R+ FPGY
Sbjct: 28 WYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPGY 87
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++ ++ D+ +H +++TP V GF+G G P P+ +E E I+ A ++P +
Sbjct: 88 VLVRMILDDESWHVVRNTPGVTGFVGVGNRPVPLDRAEAEAIIR--GAKAEQPKVRMTLL 145
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V + DGPF F G+V VD EK +V V V FGR TPV L + QVE+
Sbjct: 146 PGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196
>gi|283851491|ref|ZP_06368771.1| NusG antitermination factor [Desulfovibrio sp. FW1012B]
gi|283573025|gb|EFC21005.1| NusG antitermination factor [Desulfovibrio sp. FW1012B]
Length = 192
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 106/173 (61%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+P
Sbjct: 19 ARWYIVHTYSGFENRVEQTIREMMRTGQDGGSIEEVVVPTEKVIELVKGEKKTSTRKFYP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P
Sbjct: 79 GYVMVKMAMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYH 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 139 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 191
>gi|294627829|ref|ZP_06706408.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292597743|gb|EFF41901.1| transcription antitermination protein NusG [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 185
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 119/183 (65%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+ R+ ++ ++ +P+E V+ +R G+K SER+FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVL++ + ++ +H +K+T KV+GF+G T + P P+ D E + I+ +V+
Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181
Query: 173 VEK 175
VEK
Sbjct: 182 VEK 184
>gi|184154743|ref|YP_001843083.1| transcription antitermination protein [Lactobacillus fermentum IFO
3956]
gi|260663228|ref|ZP_05864120.1| transcription termination/antitermination factor NusG
[Lactobacillus fermentum 28-3-CHN]
gi|183226087|dbj|BAG26603.1| transcription antitermination protein [Lactobacillus fermentum IFO
3956]
gi|260552420|gb|EEX25471.1| transcription termination/antitermination factor NusG
[Lactobacillus fermentum 28-3-CHN]
Length = 181
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E + ++ R G++ + ++ +P E V V+ G+ E + F
Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ I+ ++
Sbjct: 65 PGYVLVEMVMTDQAWYVARNTPGVTGFLGSHGGGSKPTPLLPEEVDRILVRM--GQDVAR 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VG+ + + G FA +G V VD +K ++ VE+ +FGR+T EL +NQ++ +
Sbjct: 123 TDINVAVGDNIKIIAGAFADLSGKVIEVDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 180
>gi|119714942|ref|YP_921907.1| transcription termination/antitermination factor NusG [Nocardioides
sp. JS614]
gi|119535603|gb|ABL80220.1| transcription antitermination protein nusG [Nocardioides sp. JS614]
Length = 317
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 19/191 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V YS E + ++ R+ ++ + EI +P+E V ++ G++ R PGY
Sbjct: 127 WFVVHTYSGMENRVKSNLENRIISLNMEDYIHEIVVPTEEVAEIKNGQRKMVRRTVLPGY 186
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
VL++ +TD+ + ++ TP V GF+G P P++ SE+E+++
Sbjct: 187 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMSEVENMLAPAVVARAEAEAVAAGA 246
Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
AA ++PV F+V + V V DGPFA+ + + ++ E RV V IFGR TP
Sbjct: 247 PASSGGAAAKKPVEVADFDVSDSVMVVDGPFATLHATITEINAEAQRVKALVEIFGRETP 306
Query: 166 VELAYNQVEKI 176
VEL+++Q++++
Sbjct: 307 VELSFSQIQRV 317
>gi|227552592|ref|ZP_03982641.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330]
gi|257880337|ref|ZP_05659990.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933]
gi|257882191|ref|ZP_05661844.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502]
gi|257885384|ref|ZP_05665037.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501]
gi|257888179|ref|ZP_05667832.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733]
gi|257890996|ref|ZP_05670649.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410]
gi|257894250|ref|ZP_05673903.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408]
gi|257896930|ref|ZP_05676583.1| transcription antiterminator NusG [Enterococcus faecium Com12]
gi|257899609|ref|ZP_05679262.1| transcription antiterminator NusG [Enterococcus faecium Com15]
gi|258614712|ref|ZP_05712482.1| transcription antitermination protein NusG [Enterococcus faecium
DO]
gi|260562359|ref|ZP_05832873.1| transcription antitermination protein NusG [Enterococcus faecium
C68]
gi|261209266|ref|ZP_05923658.1| transcription antitermination protein NusG [Enterococcus faecium TC
6]
gi|293379127|ref|ZP_06625278.1| transcription termination/antitermination factor NusG [Enterococcus
faecium PC4.1]
gi|293557114|ref|ZP_06675669.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1039]
gi|293559848|ref|ZP_06676362.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1162]
gi|293568368|ref|ZP_06679689.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1071]
gi|293571552|ref|ZP_06682574.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E980]
gi|294616181|ref|ZP_06695978.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1636]
gi|294618923|ref|ZP_06698430.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1679]
gi|294623149|ref|ZP_06702035.1| transcription termination/antitermination factor NusG [Enterococcus
faecium U0317]
gi|314937977|ref|ZP_07845288.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a04]
gi|314944027|ref|ZP_07850712.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133C]
gi|314948417|ref|ZP_07851805.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0082]
gi|314951395|ref|ZP_07854447.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133A]
gi|314991324|ref|ZP_07856803.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133B]
gi|314995338|ref|ZP_07860444.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a01]
gi|227178218|gb|EEI59190.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330]
gi|257814565|gb|EEV43323.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933]
gi|257817849|gb|EEV45177.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502]
gi|257821240|gb|EEV48370.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501]
gi|257824233|gb|EEV51165.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733]
gi|257827356|gb|EEV53982.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410]
gi|257830629|gb|EEV57236.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408]
gi|257833495|gb|EEV59916.1| transcription antiterminator NusG [Enterococcus faecium Com12]
gi|257837521|gb|EEV62595.1| transcription antiterminator NusG [Enterococcus faecium Com15]
gi|260073283|gb|EEW61624.1| transcription antitermination protein NusG [Enterococcus faecium
C68]
gi|260076812|gb|EEW64547.1| transcription antitermination protein NusG [Enterococcus faecium TC
6]
gi|291588889|gb|EFF20716.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1071]
gi|291590936|gb|EFF22648.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1636]
gi|291594839|gb|EFF26209.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1679]
gi|291597518|gb|EFF28683.1| transcription termination/antitermination factor NusG [Enterococcus
faecium U0317]
gi|291600735|gb|EFF31032.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1039]
gi|291606184|gb|EFF35604.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E1162]
gi|291608358|gb|EFF37658.1| transcription termination/antitermination factor NusG [Enterococcus
faecium E980]
gi|292642268|gb|EFF60427.1| transcription termination/antitermination factor NusG [Enterococcus
faecium PC4.1]
gi|313590431|gb|EFR69276.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a01]
gi|313594097|gb|EFR72942.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133B]
gi|313596453|gb|EFR75298.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133A]
gi|313597372|gb|EFR76217.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133C]
gi|313642652|gb|EFS07232.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0133a04]
gi|313645142|gb|EFS09722.1| transcription termination/antitermination factor NusG [Enterococcus
faecium TX0082]
Length = 181
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K +I R + + + +P E+ V+ G++ + F
Sbjct: 5 EKNWYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++
Sbjct: 65 PGYVLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQND 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V EVGE V + +G FA G V VD EK ++ V + +FGR T EL ++QV+KI
Sbjct: 125 LEV--EVGEVVKIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 180
>gi|325956072|ref|YP_004286682.1| transcription termination/antitermination factor NusG
[Lactobacillus acidophilus 30SC]
gi|325332637|gb|ADZ06545.1| transcription termination/antitermination factor NusG
[Lactobacillus acidophilus 30SC]
Length = 185
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLK--NQGQPAKEP 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 125 TANFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|149913528|ref|ZP_01902061.1| transcription antitermination protein NusG [Roseobacter sp.
AzwK-3b]
gi|149812648|gb|EDM72477.1| transcription antitermination protein NusG [Roseobacter sp.
AzwK-3b]
Length = 177
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EK+ E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKRIAEQIRQSVAEQGLEEEIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +E+GERV V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHYEIGERVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRETPVELEFTQVTK 175
>gi|42518504|ref|NP_964434.1| transcription antitermination protein NusG [Lactobacillus johnsonii
NCC 533]
gi|227888784|ref|ZP_04006589.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC
33200]
gi|268318923|ref|YP_003292579.1| Transcription antitermination protein nusG [Lactobacillus johnsonii
FI9785]
gi|41582789|gb|AAS08400.1| transcription antitermination protein NusG [Lactobacillus johnsonii
NCC 533]
gi|227850621|gb|EEJ60707.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC
33200]
gi|262397298|emb|CAX66312.1| Transcription antitermination protein nusG [Lactobacillus johnsonii
FI9785]
gi|329666774|gb|AEB92722.1| transcription antitermination protein [Lactobacillus johnsonii DPC
6026]
Length = 183
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F
Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ + P
Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDDEIERILASQGQPAKEP- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKE 180
>gi|58336696|ref|YP_193281.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM]
gi|227903259|ref|ZP_04021064.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC
4796]
gi|58254013|gb|AAV42250.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM]
gi|227869064|gb|EEJ76485.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC
4796]
Length = 185
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++
Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLDEEVSRLLK--NQGQPAKTP 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K
Sbjct: 125 TEDFDIGETVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK 180
>gi|327182886|gb|AEA31333.1| transcription termination/antitermination factor NusG
[Lactobacillus amylovorus GRL 1118]
Length = 185
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLK--NQGQPAKEP 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 125 TANFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|254486647|ref|ZP_05099852.1| transcription termination/antitermination factor NusG [Roseobacter
sp. GAI101]
gi|214043516|gb|EEB84154.1| transcription termination/antitermination factor NusG [Roseobacter
sp. GAI101]
Length = 177
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 82/177 (46%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGERV V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGERVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177
>gi|227891221|ref|ZP_04009026.1| transcription antitermination protein NusG [Lactobacillus
salivarius ATCC 11741]
gi|227867095|gb|EEJ74516.1| transcription antitermination protein NusG [Lactobacillus
salivarius ATCC 11741]
Length = 201
Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 59/180 (32%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60
+WY++ Y+ E K E++ R + G++ + + +P E + G++ + +
Sbjct: 24 EKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKT 83
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD+ ++ +++TP V GF+ G+G P+P+ D EI HI++++ + +
Sbjct: 84 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSRH- 142
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
S+ EVG+ V + DG F+ G + +D EK ++ V++ +FGR T EL Y+QV+K+V
Sbjct: 143 -SNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 201
>gi|319654854|ref|ZP_08008929.1| transcription antitermination protein NusG [Bacillus sp.
2_A_57_CT2]
gi|317393417|gb|EFV74180.1| transcription antitermination protein NusG [Bacillus sp.
2_A_57_CT2]
Length = 177
Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETELKNGKKKVVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E+ +I+ + V+
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVTNILKHM--GVEEA 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V V +GPFA+F G ++++D++K+++ V V +FGR TPVEL ++Q+EK+
Sbjct: 119 RFDINFEIGETVQVKEGPFANFTGTIEDIDKDKAKIKVLVNMFGRDTPVELDFSQIEKL 177
>gi|295692220|ref|YP_003600830.1| transcription antitermination protein nusg [Lactobacillus crispatus
ST1]
gi|295030326|emb|CBL49805.1| Transcription antitermination protein nusG [Lactobacillus crispatus
ST1]
Length = 185
Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV+
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPVA 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 127 N--FDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|83941516|ref|ZP_00953978.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. EE-36]
gi|83847336|gb|EAP85211.1| transcription termination/antitermination factor NusG
[Sulfitobacter sp. EE-36]
Length = 177
Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177
>gi|332188803|ref|ZP_08390513.1| transcription termination/antitermination factor NusG [Sphingomonas
sp. S17]
gi|332011156|gb|EGI53251.1| transcription termination/antitermination factor NusG [Sphingomonas
sp. S17]
Length = 178
Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K +SI +R GLDHLV +I +P+E V R+G+K+ ER+F P
Sbjct: 2 ARWYIIHAYSGFEGKVRDSIMAEATRLGLDHLVAQIEVPTETVTEARRGKKIAVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--VSS 120
GYVL K M D+VYH +K+TPKV GFLG P +++SE ++N E A P
Sbjct: 62 GYVLAKLDMNDQVYHLVKNTPKVTGFLGAMGKPQAISESEATRMLNSKEEAAAAPKHKVK 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +E+G+ V V +GPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE+
Sbjct: 122 VDYEIGDAVKVLEGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVER 176
>gi|152991722|ref|YP_001357443.1| transcription antitermination protein NusG [Sulfurovum sp. NBC37-1]
gi|151423583|dbj|BAF71086.1| transcriptional antitermination factor NusG [Sulfurovum sp.
NBC37-1]
Length = 176
Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q YS E +I ++ G++ V I +P+E V+ V+ G K +ER
Sbjct: 1 MAFQWYAIQTYSGSELSVKRAIEQLVADYGMEDKVERIVVPTEEVIEVKNGEKKITERTL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ P+V F+G + P+ +T+++I+ I++++E P
Sbjct: 61 YPGYAFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTALTEADIKVILDKMEQKAA-PRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V + DGPFA+F G+V+ D + ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 VDFETGEMVRIVDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEILYTQVEKII 176
>gi|114771284|ref|ZP_01448704.1| Probable transcription antitermination protein NusG [alpha
proteobacterium HTCC2255]
gi|114548209|gb|EAU51096.1| Probable transcription antitermination protein NusG [alpha
proteobacterium HTCC2255]
Length = 177
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 117/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + + G+ + ++ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAELINEAVEQEGMQDEIEQVLVPTEEVIEVRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY+L++ M++K YH I + +V GFLG PSP+ D E+ I+NQVE V+ P +
Sbjct: 61 MPGYLLVRMDMSEKGYHLINNINRVTGFLGQPGKPSPMRDKEVAFILNQVEEGVENPRNL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++GE+V V++GPF F G+V+ VD+E SR+ V V IFGR TPVEL + QV K
Sbjct: 121 ITFDIGEQVNVTEGPFEGFAGMVEEVDQENSRLKVTVSIFGRATPVELEFTQVMK 175
>gi|289523625|ref|ZP_06440479.1| transcription termination/antitermination factor NusG
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503317|gb|EFD24481.1| transcription termination/antitermination factor NusG
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 180
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 99/175 (56%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++Q Y+ E K ++ R++ G++ + + +P E V V+ G++ +R+ F
Sbjct: 6 ERRWYVIQTYAGYENKVKANLEQRIATMGMEDKIFRVLVPMEERVYVKDGKQKKVKRKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+L++ ++ D+ ++ ++ TP V GF+G G NP P++D E++ + ++ +P +
Sbjct: 66 PGYILVEMILDDQSWYVVRHTPGVTGFVGAGNNPIPLSDREVQDVFAKIGREQMKPKVEI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ + V GPF G V V EK +V V +FGR T VE YN + KI
Sbjct: 126 DLKPGDVIRVKSGPFEGQAGTVVEVIPEKGKVKFSVTLFGRETIVEADYNDLTKI 180
>gi|220927765|ref|YP_002504674.1| NusG antitermination factor [Clostridium cellulolyticum H10]
gi|219998093|gb|ACL74694.1| NusG antitermination factor [Clostridium cellulolyticum H10]
Length = 172
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG
Sbjct: 6 KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P++D E++ + V+ V +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDEEVKAM------GVEEFAPEVDY 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EV + V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI
Sbjct: 120 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 172
>gi|256844505|ref|ZP_05549991.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 125-2-CHN]
gi|256849107|ref|ZP_05554540.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US]
gi|262047587|ref|ZP_06020542.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus MV-3A-US]
gi|256613583|gb|EEU18786.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 125-2-CHN]
gi|256713883|gb|EEU28871.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US]
gi|260572163|gb|EEX28728.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus MV-3A-US]
Length = 185
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 126 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|323339376|ref|ZP_08079661.1| transcription termination/antitermination factor NusG
[Lactobacillus ruminis ATCC 25644]
gi|323093199|gb|EFZ35786.1| transcription termination/antitermination factor NusG
[Lactobacillus ruminis ATCC 25644]
Length = 223
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 102/180 (56%), Gaps = 7/180 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60
+WY++ YS E K ++ R G++ + + +P E + G++ + +
Sbjct: 47 EKKWYVLHTYSGYENKVKSNLESRAESMGMEDYIFRVVVPEEEKCETTKTGKEKVEKLKT 106
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ D EI+ I+ V
Sbjct: 107 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLDEEIQTILRSVGMTRN-- 164
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ EVG+ + +++G FA G + +D EK ++H + +FGR T EL+++QVE++V
Sbjct: 165 -ADFDAEVGDTITITEGAFAGQVGKITEIDSEKMKLHAMIDVFGRETDAELSFDQVERLV 223
>gi|73663528|ref|YP_302309.1| transcription antitermination factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72496043|dbj|BAE19364.1| transcription antitermination factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 182
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTLTKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQM--GMKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V ++GE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 125 IDVQIDLGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182
>gi|94987376|ref|YP_595309.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00]
gi|94731625|emb|CAJ54988.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00]
Length = 194
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWYIV YS E++ +I + + L+ E+ +P+ERVV + + G K + R+F+P
Sbjct: 21 RWYIVHTYSGFEQRVEATIKEMMRSGQDEGLIHEVVLPTERVVELGKGGLKRTTTRKFYP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY++++ MTD +H I+ PKV GF+G P+P+ D E I++ +E ++P
Sbjct: 81 GYIMLRMTMTDYSWHLIQTIPKVTGFVGGKNRPAPMKDEEASKILSLMETRQEQPRPKFS 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ + V DGPF FNGIV++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 141 FERGDEIRVIDGPFGGFNGIVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 193
>gi|85375046|ref|YP_459108.1| transcription antiterminator [Erythrobacter litoralis HTCC2594]
gi|84788129|gb|ABC64311.1| transcription antiterminator [Erythrobacter litoralis HTCC2594]
Length = 178
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K ++I R GL V E+ +P+E V +++G+KV +ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVRDAIIAEADRLGLSDGVEEVEVPTETVTEIKRGKKVQTERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL K MTD +YH +K+TPKV GFLG P P+++ E VE A P
Sbjct: 62 GYVLAKLQMTDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKKDIQ 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE +
Sbjct: 122 VDYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELEFEQVELV 177
>gi|293381063|ref|ZP_06627084.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 214-1]
gi|312977941|ref|ZP_07789687.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus CTV-05]
gi|290922363|gb|EFD99344.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus 214-1]
gi|310895248|gb|EFQ44316.1| transcription termination/antitermination factor NusG
[Lactobacillus crispatus CTV-05]
Length = 185
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 126 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|239907757|ref|YP_002954498.1| transcription antitermination protein NusG [Desulfovibrio
magneticus RS-1]
gi|239797623|dbj|BAH76612.1| transcription antitermination protein NusG [Desulfovibrio
magneticus RS-1]
Length = 187
Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats.
Identities = 66/173 (38%), Positives = 105/173 (60%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIV YS E + ++ + + E+ +P+E+++ + KG K S R+F+P
Sbjct: 14 ARWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTSTRKFYP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P
Sbjct: 74 GYVMVKMAMDDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEAQKILSLMVSRQEQPRPKYH 133
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 134 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186
>gi|15923525|ref|NP_371059.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926213|ref|NP_373746.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus N315]
gi|21282220|ref|NP_645308.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49482766|ref|YP_039990.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49485401|ref|YP_042622.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651412|ref|YP_185468.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus COL]
gi|82750244|ref|YP_415985.1| transcription antitermination protein [Staphylococcus aureus RF122]
gi|87160422|ref|YP_493224.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194298|ref|YP_499090.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148266996|ref|YP_001245939.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus JH9]
gi|150393043|ref|YP_001315718.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus JH1]
gi|151220710|ref|YP_001331532.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156978864|ref|YP_001441123.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|161508776|ref|YP_001574435.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141027|ref|ZP_03565520.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315646|ref|ZP_04838859.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731141|ref|ZP_04865306.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253732544|ref|ZP_04866709.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus TCH130]
gi|255005330|ref|ZP_05143931.2| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257424650|ref|ZP_05601077.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427318|ref|ZP_05603717.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257429954|ref|ZP_05606338.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 68-397]
gi|257432656|ref|ZP_05609016.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus E1410]
gi|257435560|ref|ZP_05611608.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M876]
gi|257795365|ref|ZP_05644344.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9781]
gi|258408948|ref|ZP_05681229.1| transcription termination-antitermination factor NusG
[Staphylococcus aureus A9763]
gi|258420414|ref|ZP_05683357.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9719]
gi|258422617|ref|ZP_05685523.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9635]
gi|258439335|ref|ZP_05690267.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9299]
gi|258444075|ref|ZP_05692412.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8115]
gi|258446343|ref|ZP_05694501.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A6300]
gi|258448436|ref|ZP_05696551.1| transcription antitermination protein nusG [Staphylococcus aureus
A6224]
gi|258452731|ref|ZP_05700729.1| transcription antitermination protein nusG [Staphylococcus aureus
A5948]
gi|258453792|ref|ZP_05701766.1| transcription antitermination protein nusG [Staphylococcus aureus
A5937]
gi|262049578|ref|ZP_06022447.1| transcription antitermination protein [Staphylococcus aureus D30]
gi|262052423|ref|ZP_06024623.1| transcription antitermination protein [Staphylococcus aureus
930918-3]
gi|269202159|ref|YP_003281428.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus ED98]
gi|282894971|ref|ZP_06303194.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8117]
gi|282903124|ref|ZP_06311015.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C160]
gi|282904914|ref|ZP_06312772.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282907864|ref|ZP_06315699.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910177|ref|ZP_06317981.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282913369|ref|ZP_06321158.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M899]
gi|282915859|ref|ZP_06323624.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus D139]
gi|282918324|ref|ZP_06326061.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C427]
gi|282923286|ref|ZP_06330966.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C101]
gi|282924450|ref|ZP_06332122.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9765]
gi|282928873|ref|ZP_06336464.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A10102]
gi|283769692|ref|ZP_06342584.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus H19]
gi|283957334|ref|ZP_06374787.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus A017934/97]
gi|284023546|ref|ZP_06377944.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus 132]
gi|293500415|ref|ZP_06666266.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 58-424]
gi|293509360|ref|ZP_06668071.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M809]
gi|293523947|ref|ZP_06670634.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M1015]
gi|294850312|ref|ZP_06791046.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9754]
gi|295406913|ref|ZP_06816716.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8819]
gi|295427074|ref|ZP_06819710.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|296275782|ref|ZP_06858289.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MR1]
gi|297208750|ref|ZP_06925178.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297246263|ref|ZP_06930112.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8796]
gi|297590573|ref|ZP_06949212.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MN8]
gi|300912840|ref|ZP_07130282.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus TCH70]
gi|304381865|ref|ZP_07364512.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|60390427|sp|Q6GBV1|NUSG_STAAS RecName: Full=Transcription antitermination protein nusG
gi|60390441|sp|Q6GJD2|NUSG_STAAR RecName: Full=Transcription antitermination protein nusG
gi|60392842|sp|P0A095|NUSG_STAAM RecName: Full=Transcription antitermination protein nusG
gi|60392843|sp|P0A096|NUSG_STAAN RecName: Full=Transcription antitermination protein nusG
gi|60392844|sp|P0A097|NUSG_STAAW RecName: Full=Transcription antitermination protein nusG
gi|81695157|sp|Q5HID9|NUSG_STAAC RecName: Full=Transcription antitermination protein nusG
gi|110815889|sp|Q2G0P2|NUSG_STAA8 RecName: Full=Transcription antitermination protein nusG
gi|110815890|sp|P0C1S3|NUSG_STAAE RecName: Full=Transcription antitermination protein nusG
gi|13183703|gb|AAK15310.1|AF327733_7 NusG [Staphylococcus aureus subsp. aureus str. Newman]
gi|2078377|gb|AAB54018.1| NusG [Staphylococcus aureus]
gi|13700426|dbj|BAB41724.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus N315]
gi|14246303|dbj|BAB56697.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203656|dbj|BAB94356.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49240895|emb|CAG39562.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49243844|emb|CAG42269.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285598|gb|AAW37692.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus COL]
gi|82655775|emb|CAI80175.1| transcription antitermination protein [Staphylococcus aureus RF122]
gi|87126396|gb|ABD20910.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87201856|gb|ABD29666.1| transcription antitermination protein, putative [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|147740065|gb|ABQ48363.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus JH9]
gi|149945495|gb|ABR51431.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus JH1]
gi|150373510|dbj|BAF66770.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156720999|dbj|BAF77416.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|160367585|gb|ABX28556.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253725106|gb|EES93835.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253729473|gb|EES98202.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus TCH130]
gi|257272220|gb|EEV04343.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275511|gb|EEV06984.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257279151|gb|EEV09752.1| transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus 68-397]
gi|257282071|gb|EEV12206.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus E1410]
gi|257284751|gb|EEV14870.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M876]
gi|257789337|gb|EEV27677.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9781]
gi|257840299|gb|EEV64762.1| transcription termination-antitermination factor NusG
[Staphylococcus aureus A9763]
gi|257843604|gb|EEV68010.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9719]
gi|257847189|gb|EEV71197.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9635]
gi|257847672|gb|EEV71671.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9299]
gi|257850745|gb|EEV74690.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8115]
gi|257854937|gb|EEV77882.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A6300]
gi|257858305|gb|EEV81192.1| transcription antitermination protein nusG [Staphylococcus aureus
A6224]
gi|257859604|gb|EEV82454.1| transcription antitermination protein nusG [Staphylococcus aureus
A5948]
gi|257864048|gb|EEV86802.1| transcription antitermination protein nusG [Staphylococcus aureus
A5937]
gi|259159669|gb|EEW44713.1| transcription antitermination protein [Staphylococcus aureus
930918-3]
gi|259162318|gb|EEW46891.1| transcription antitermination protein [Staphylococcus aureus D30]
gi|262074449|gb|ACY10422.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269940109|emb|CBI48485.1| transcription antitermination protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282314154|gb|EFB44544.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C101]
gi|282317458|gb|EFB47830.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C427]
gi|282320155|gb|EFB50500.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus D139]
gi|282322401|gb|EFB52723.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M899]
gi|282325569|gb|EFB55877.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282328248|gb|EFB58526.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331739|gb|EFB61250.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282589481|gb|EFB94570.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A10102]
gi|282592861|gb|EFB97865.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9765]
gi|282596079|gb|EFC01040.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus C160]
gi|282762653|gb|EFC02790.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8117]
gi|283459839|gb|EFC06929.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus H19]
gi|283469828|emb|CAQ49039.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ST398]
gi|283790785|gb|EFC29600.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus A017934/97]
gi|285816236|gb|ADC36723.1| Transcription antitermination protein NusG [Staphylococcus aureus
04-02981]
gi|290920910|gb|EFD97971.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus M1015]
gi|291095420|gb|EFE25681.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 58-424]
gi|291467457|gb|EFF09972.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus M809]
gi|294822824|gb|EFG39259.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A9754]
gi|294968144|gb|EFG44170.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8819]
gi|295128862|gb|EFG58492.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|296886695|gb|EFH25600.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297176861|gb|EFH36119.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus A8796]
gi|297576872|gb|EFH95587.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MN8]
gi|298693867|gb|ADI97089.1| transcription antitermination protein NusG [Staphylococcus aureus
subsp. aureus ED133]
gi|300885944|gb|EFK81147.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus TCH70]
gi|302332249|gb|ADL22442.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302750427|gb|ADL64604.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304339651|gb|EFM05598.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312439044|gb|ADQ78115.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus TCH60]
gi|312829032|emb|CBX33874.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128829|gb|EFT84828.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus CGS03]
gi|315193900|gb|EFU24294.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus CGS00]
gi|315196652|gb|EFU26999.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141599|gb|EFW33438.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320141772|gb|EFW33600.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus MRSA177]
gi|323439806|gb|EGA97523.1| transcription antitermination protein [Staphylococcus aureus O11]
gi|323443092|gb|EGB00712.1| transcription antitermination protein [Staphylococcus aureus O46]
gi|329313256|gb|AEB87669.1| Transcription antitermination protein nusG [Staphylococcus aureus
subsp. aureus T0131]
gi|329727905|gb|EGG64354.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 21172]
gi|329731015|gb|EGG67388.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 21189]
gi|329731956|gb|EGG68312.1| transcription termination/antitermination factor NusG
[Staphylococcus aureus subsp. aureus 21193]
Length = 182
Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ + ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTTVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V EVGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|227879328|ref|ZP_03997193.1| transcriptional antiterminator NusG [Lactobacillus crispatus
JV-V01]
gi|227861072|gb|EEJ68726.1| transcriptional antiterminator NusG [Lactobacillus crispatus
JV-V01]
Length = 199
Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 21 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D E+ ++ ++PV
Sbjct: 81 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 139
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 140 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195
>gi|45644660|gb|AAS73048.1| predicted transcription antiterminator NusG [uncultured marine
gamma proteobacterium EBAC20E09]
Length = 175
Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q YS E+K ++ R+ + L EI IP+E++V ++ G K +ER+FFPGY
Sbjct: 3 WYVIQAYSGYEQKVKAALEERIMLNNLSEKFGEILIPTEQIVELKAGTKKTTERKFFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+LI+ + D + ++ TP+V GF+ GT + P P+++ +++ I+N++E P +
Sbjct: 63 ILIQMNLEDDSWQLVQSTPRVSGFVGGTRDKPLPISEDDVKSIINRIEVGEDAPAPKTIY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE + V DGPF FNG+V+ VD E++ V V I GR TPVEL + Q+EK
Sbjct: 123 EPGEVIRVCDGPFNDFNGVVEEVDYERNIAKVSVQILGRATPVELDFIQIEK 174
>gi|260102419|ref|ZP_05752656.1| transcription antitermination protein NusG [Lactobacillus
helveticus DSM 20075]
gi|260083787|gb|EEW67907.1| transcription antitermination protein NusG [Lactobacillus
helveticus DSM 20075]
gi|328462980|gb|EGF34788.1| transcription termination/antitermination factor NusG
[Lactobacillus helveticus MTCC 5463]
Length = 185
Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R+ G+ + + +P E V +G+K E + FP
Sbjct: 7 KQWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E++ ++ ++P
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 127 N--FEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|325267345|ref|ZP_08134006.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Kingella denitrificans ATCC 33394]
gi|324981140|gb|EGC16791.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Kingella denitrificans ATCC 33394]
Length = 183
Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 120/181 (66%), Gaps = 6/181 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GR+ SER+F
Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEEYFGQILVPVEEVVDIKNGRRTVSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQ---- 115
FPGYVL++ M D +H +K PKV GF+G P P+T E++ +M QV + Q
Sbjct: 61 FPGYVLVEMEMMDSSWHLVKSIPKVNGFVGGTVHRPLPITQKEVDAMMAQVGGSSQDGVM 120
Query: 116 -RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+P V F++G++V +++GPFA FNG+V++V+ EK+++ V V IFGR TPVEL + QVE
Sbjct: 121 KKPKPRVEFDIGQQVRINEGPFADFNGVVEHVEYEKNKLRVMVQIFGRETPVELEFGQVE 180
Query: 175 K 175
K
Sbjct: 181 K 181
>gi|148244883|ref|YP_001219577.1| transcription antitermination protein NusG [Candidatus
Vesicomyosocius okutanii HA]
gi|146326710|dbj|BAF61853.1| transcription antitermination protein NusG [Candidatus
Vesicomyosocius okutanii HA]
Length = 177
Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWY+ S E K +I R GL+ LV E+ +P+E+VV ++ G+K +ER+F
Sbjct: 1 MSKRWYVFHARSGFESKVKIAIEESTIREGLEDLVGEVLVPTEQVVELKDGQKKMAERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+L+ +T+ + +K+T VIGF+ G+ PSP+T E++ I+ +V+ +P
Sbjct: 61 FPGYMLVNMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKILMRVQEGADKPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V ++ GE + V DGPF FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK
Sbjct: 121 KVAYQPGEEILVIDGPFNEFNGLVEAVDYEKNLLKVEVLIFGRSTSVELEFSQVEK 176
>gi|323143688|ref|ZP_08078359.1| transcription termination/antitermination factor NusG
[Succinatimonas hippei YIT 12066]
gi|322416521|gb|EFY07184.1| transcription termination/antitermination factor NusG
[Succinatimonas hippei YIT 12066]
Length = 219
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E++ +++ R+ ++H E+ +P E+V ++ G+K SER+FFPG
Sbjct: 45 RWYVVQAFSGFEQRVAQTLRERIKIHNMEHDFGEVLVPKEKVKEIKDGKKRESERKFFPG 104
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ MT + + +K T +V+GF+ GT E P P+T +E + I++++ + + P
Sbjct: 105 YVLVQMRMTSETWQLVKHTDRVLGFIGGTAEKPLPITQAEADKILSRLRESEESPRPKTI 164
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V DG F F G V+ VD EK+RV V + IFGR TPVEL ++QVEK
Sbjct: 165 YEVGEVVRAIDGAFKDFVGTVEKVDYEKNRVTVSIAIFGRATPVELEFSQVEK 217
>gi|297567070|ref|YP_003686042.1| NusG antitermination factor [Meiothermus silvanus DSM 9946]
gi|296851519|gb|ADH64534.1| NusG antitermination factor [Meiothermus silvanus DSM 9946]
Length = 185
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERR 59
M+ WY V Y E K ++ R++ + +L+ ++ IP+E VV R G K R+
Sbjct: 1 MSIEWYAVHTYVGYEDKVKANLEKRVAALNMGNLIYQVLIPTEEVVEHRDGGKKDVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVE 111
FPGYV ++ M D + + +++TP V GF+GT P P+T E++HI+ + +
Sbjct: 61 LFPGYVFVQMDMGDDPAEVNEAWEAVRNTPGVTGFVGTATRPVPLTPDEVQHILEVSGLA 120
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P V F+ G+ V V GPFA F G+V V+ E+ +V V V IFGR TPVEL +
Sbjct: 121 GKKEAPKPQVSFKEGDVVRVVSGPFADFTGVVGEVNLERQKVKVLVSIFGRETPVELDFA 180
Query: 172 QV 173
QV
Sbjct: 181 QV 182
>gi|85710261|ref|ZP_01041326.1| transcription antiterminator [Erythrobacter sp. NAP1]
gi|85688971|gb|EAQ28975.1| transcription antiterminator [Erythrobacter sp. NAP1]
Length = 178
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYI+ YS E K E+I R GL V EI +P+E V V++G+KV ER+F PG
Sbjct: 3 RWYIIHAYSGFENKVKEAIIAEADRLGLSEGVEEIEVPTETVTEVKRGKKVQVERKFMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSV 121
YVL K M D +YH +K+TPKV GFLG P P+++ E VE A P SV
Sbjct: 63 YVLAKLRMNDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKTQVSV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE +
Sbjct: 123 DYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELDFEQVELV 177
>gi|90962215|ref|YP_536131.1| transcription antitermination protein [Lactobacillus salivarius
UCC118]
gi|301299871|ref|ZP_07206105.1| transcription termination/antitermination factor NusG
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821409|gb|ABE00048.1| Transcription antitermination protein [Lactobacillus salivarius
UCC118]
gi|300214879|gb|ADJ79295.1| Transcription antitermination protein nusG [Lactobacillus
salivarius CECT 5713]
gi|300852542|gb|EFK80192.1| transcription termination/antitermination factor NusG
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 186
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 59/180 (32%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60
+WY++ Y+ E K E++ R + G++ + + +P E + G++ + +
Sbjct: 9 EKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKT 68
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD+ ++ +++TP V GF+ G+G P+P+ D EI HI++++ + +
Sbjct: 69 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSRH- 127
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
S+ EVG+ V + DG F+ G + +D EK ++ V++ +FGR T EL Y+QV+K+V
Sbjct: 128 -SNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 186
>gi|254462232|ref|ZP_05075648.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2083]
gi|206678821|gb|EDZ43308.1| transcription termination/antitermination factor NusG
[Rhodobacteraceae bacterium HTCC2083]
Length = 177
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I +GL+ + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSTIENGLEDDIEEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ M+D+ YH I +V GFLG P P+ D+E+E I+ +V P +
Sbjct: 61 MPGYVLVRMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVEAILGRVAEGEDAPRNI 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VD+E R+ V V IFGR TPVEL Y QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRETPVELEYTQVNK 175
>gi|257784977|ref|YP_003180194.1| NusG antitermination factor [Atopobium parvulum DSM 20469]
gi|257473484|gb|ACV51603.1| NusG antitermination factor [Atopobium parvulum DSM 20469]
Length = 181
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M RWY+V YS E K + R+ GL+ V +I IP+E V V+ G++ E +
Sbjct: 1 MAKRWYVVHTYSGYENKVKTDLEHRIETYGLERAVVDIQIPTEEVTEVKDGGKRETKESK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D + +++TP V GF+G P P+ E + IM + PV
Sbjct: 61 VFPGYVLVRMELDDNTWAVVRNTPGVTGFVGIDGKPVPLRRDEFDKIMRRGGMKTGSPVP 120
Query: 120 S---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ + V GP A F+G V V+ E ++ V + IFGR TPVEL +Q+ I
Sbjct: 121 KRTATNIEVGQAIHVLSGPLADFDGTVSEVNAESGKIKVMLTIFGRETPVELTMDQISLI 180
>gi|94497192|ref|ZP_01303764.1| NusG antitermination factor [Sphingomonas sp. SKA58]
gi|94423297|gb|EAT08326.1| NusG antitermination factor [Sphingomonas sp. SKA58]
Length = 178
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFESKVKESILAEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL K M D +YH +K+TPKV GFLG+ P +++ E + A P
Sbjct: 62 GYVLAKLSMNDDIYHLVKNTPKVTGFLGSSGKPQAISEGEAARYFGAQKEAEAAPKHKVN 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V +E+G+ V V DGPFASFNG+V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 122 VDYEIGDSVKVLDGPFASFNGVVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175
>gi|297625760|ref|YP_003687523.1| Transcription antitermination protein NusG [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921525|emb|CBL56079.1| Transcription antitermination protein NusG [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 295
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 12/185 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E + ++I R+ ++ + E +P+E V +RKG++ R F PGY
Sbjct: 110 WYVVHTYSGMENRVKQNIDNRVKSLNMEDYIYETVVPTEDAVEMRKGQRKKVTRVFMPGY 169
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ------------VEA 112
VL++ MTD+ + T++ TP V GF+G G+ P+P+ SE+EH++
Sbjct: 170 VLVRMEMTDESWSTVRHTPSVTGFVGQGQTPAPLDLSEVEHMLTPSVTAQVVASGEAKAG 229
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A Q V V + VG++V V DGPFA + + ++ R+ +V I GR TPV+L + Q
Sbjct: 230 ADQEKVEVVDYAVGDQVMVIDGPFAGVHATITEINTHNQRLKADVEILGRETPVDLTFPQ 289
Query: 173 VEKIV 177
++K++
Sbjct: 290 IQKVI 294
>gi|99080068|ref|YP_612222.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
gi|259415894|ref|ZP_05739814.1| transcription termination/antitermination factor NusG [Silicibacter
sp. TrichCH4B]
gi|99036348|gb|ABF62960.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
gi|259347333|gb|EEW59110.1| transcription termination/antitermination factor NusG [Silicibacter
sp. TrichCH4B]
Length = 177
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 83/177 (46%), Positives = 117/177 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL+ + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVVEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDQGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K V
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTKQV 177
>gi|148543544|ref|YP_001270914.1| transcription antitermination protein nusG [Lactobacillus reuteri
DSM 20016]
gi|184152951|ref|YP_001841292.1| transcription antitermination protein NusG [Lactobacillus reuteri
JCM 1112]
gi|194468089|ref|ZP_03074075.1| NusG antitermination factor [Lactobacillus reuteri 100-23]
gi|148530578|gb|ABQ82577.1| transcription antitermination protein nusG [Lactobacillus reuteri
DSM 20016]
gi|183224295|dbj|BAG24812.1| transcription antitermination protein NusG [Lactobacillus reuteri
JCM 1112]
gi|194452942|gb|EDX41840.1| NusG antitermination factor [Lactobacillus reuteri 100-23]
Length = 180
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E + ++ R G++ + + +P E V V+ G+ + + F
Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ IM ++ + V
Sbjct: 65 PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRM--GTETTV 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
S + + G+ V V G FA+ V VD EK ++ V +FGR T EL ++Q++
Sbjct: 123 SDIDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQID 178
>gi|56551620|ref|YP_162459.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|241761255|ref|ZP_04759343.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543194|gb|AAV89348.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|241374162|gb|EER63659.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 179
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 88/178 (49%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYI+ YS E K E++ R GL LV I +P+E+ V VR+G+KV ER+
Sbjct: 1 MS-RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKC 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ---VEAAVQRP 117
FPGYVL K M + VYH +K+TPKV GFLG P P++D+E EHI+N+ E A ++
Sbjct: 60 FPGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNRKAEAEVAGKKA 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+
Sbjct: 120 QIKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177
>gi|227894581|ref|ZP_04012386.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM
16047]
gi|227863572|gb|EEJ70993.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM
16047]
Length = 198
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 20 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 79
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++
Sbjct: 80 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLK--NQGQPAKRP 137
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 138 TANFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 194
>gi|71279510|ref|YP_271421.1| transcription termination/antitermination factor NusG [Colwellia
psychrerythraea 34H]
gi|71145250|gb|AAZ25723.1| transcription termination/antitermination factor NusG [Colwellia
psychrerythraea 34H]
Length = 195
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + +++ + GL EI +P+E VV +R G+K S R+FFPG
Sbjct: 22 RWYVVQAFSGYEGRVQKTLLEHIEIHGLQEKFGEILVPTEEVVEMRAGQKRKSSRKFFPG 81
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ M +H +K P+V+GF+ GT + P+P+T E + I+ ++E +P
Sbjct: 82 YVLVQMEMDVDAWHLVKSVPRVLGFIGGTSDRPAPITKKEADRILQRLEET-DKPKPKTL 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPFA FNG+V+ +D EK+R+ V V+IFGR TPV+L + QVEK
Sbjct: 141 FEPGEVIRVIDGPFADFNGVVEELDYEKNRIKVSVLIFGRSTPVDLEFGQVEK 193
>gi|269215893|ref|ZP_06159747.1| transcription termination/antitermination factor NusG [Slackia
exigua ATCC 700122]
gi|269130843|gb|EEZ61919.1| transcription termination/antitermination factor NusG [Slackia
exigua ATCC 700122]
Length = 181
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 5/181 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M+ +WY+V YS E K +++ R+ GL+ + +I IP+E V +++ GR+V SE++
Sbjct: 1 MSKKWYVVHTYSGYENKVKQTLETRIEMYGLEDSIVDIQIPTETVTEIKEGGRRVESEKK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118
P YVL++ M D+ + +++TP V GF+G PSP+T +E IM++ +A+ V
Sbjct: 61 VLPSYVLVRMEMNDRNWAVVRNTPGVTGFVGPESSTPSPLTRAEFNKIMHRNDASAGVAV 120
Query: 119 SS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVG+ V V+ GP A F+GIV V E +V V V IFGR TPVEL+++QV
Sbjct: 121 PKKTSTSLEVGQTVKVTSGPLAEFDGIVSEVSPEAGKVKVLVSIFGRETPVELSFDQVAS 180
Query: 176 I 176
I
Sbjct: 181 I 181
>gi|227363500|ref|ZP_03847620.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3]
gi|227545179|ref|ZP_03975228.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A]
gi|300909144|ref|ZP_07126605.1| transcription termination/antitermination factor NusG
[Lactobacillus reuteri SD2112]
gi|325681893|ref|ZP_08161411.1| transcription antitermination protein NusG [Lactobacillus reuteri
MM4-1A]
gi|227071437|gb|EEI09740.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3]
gi|227184825|gb|EEI64896.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A]
gi|300893009|gb|EFK86368.1| transcription termination/antitermination factor NusG
[Lactobacillus reuteri SD2112]
gi|324978537|gb|EGC15486.1| transcription antitermination protein NusG [Lactobacillus reuteri
MM4-1A]
Length = 186
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E + ++ R G++ + + +P E V V+ G+ + + F
Sbjct: 11 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTF 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ ++TP V GFLG+ G P+P+ E++ IM ++ + V
Sbjct: 71 PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRM--GTETTV 128
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
S + + G+ V V G FA+ V VD EK ++ V +FGR T EL ++Q++
Sbjct: 129 SDIDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQID 184
>gi|260752788|ref|YP_003225681.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552151|gb|ACV75097.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 179
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 88/178 (49%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RWYI+ YS E K E++ R GL LV I +P+E+ V VR+G+KV ER+
Sbjct: 1 MS-RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKC 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRP 117
FPGYVL K M + VYH +K+TPKV GFLG P P++D+E EHI+N + E A ++
Sbjct: 60 FPGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNHKAEAEVAGKKA 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+
Sbjct: 120 QIKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177
>gi|150392173|ref|YP_001322222.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149952035|gb|ABR50563.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 172
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K +I G++ L+ E+ +P+E + ++ G+K E + +P
Sbjct: 5 AKWYVVHTYSGHENKVKINIEKMAENRGMEDLILEVAVPTEEKIEIKNGKKKTKEVKLYP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +TD+ ++ +++T V GF+G P P+TD E++++ V++ +
Sbjct: 65 GYVLLKMHVTDESWYLVRNTRGVTGFVGPSSKPIPLTDREVKNM------GVEQVSHEID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G+ + V GPF SF G +++++ EK + V + +FGR TPVEL ++QV+ +
Sbjct: 119 IKIGDSIRVVSGPFESFMGSIEHINMEKQTIRVLISMFGRETPVELEFHQVQAL 172
>gi|150010981|gb|ABR57147.1| transcription antitermination protein [Staphylococcus xylosus]
Length = 182
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEKIFRVVIPEEEETQVKDGKAKTLSKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQM--GMKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V + GPFA+ G ++ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 125 IDVQVELGEQVRIKSGPFANQVGEIQEIETDKFKLTVLVDMFGRETPVEVEFDQVEKL 182
>gi|309812402|ref|ZP_07706157.1| transcription termination/antitermination factor NusG [Dermacoccus
sp. Ellin185]
gi|308433707|gb|EFP57584.1| transcription termination/antitermination factor NusG [Dermacoccus
sp. Ellin185]
Length = 277
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R++ ++ + +I +P E ++ G+K + R PGY
Sbjct: 92 WYVIHSYAGYEKRVKTNLEQRITSLNMEDYIFQIEVPMEDYTEIKNGQKKSGTRVRIPGY 151
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G P P++ E+ ++N
Sbjct: 152 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPYPLSIDEVVTMLNPTFEEPEASAEGAAAS 211
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + V F VGE V V +GPF + + ++ + ++ V V IFGR TPVEL +
Sbjct: 212 SGSASSASADVDFTVGESVTVMEGPFETLPATISEINADTQKIKVLVSIFGRETPVELGF 271
Query: 171 NQVEKI 176
NQV KI
Sbjct: 272 NQVAKI 277
>gi|302671656|ref|YP_003831616.1| transcription termination/antitermination factor NusG [Butyrivibrio
proteoclasticus B316]
gi|302396129|gb|ADL35034.1| transcription termination/antitermination factor NusG [Butyrivibrio
proteoclasticus B316]
Length = 213
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 58/172 (33%), Positives = 98/172 (56%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K ++ + L++ + E+ +P + VV V+ G + N +R+ FPGY
Sbjct: 46 WYVVHTYSGYENKVKANLEKTIENRHLENQILEVRVPLQDVVEVKNGARKNVQRKMFPGY 105
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ M D+ ++ +++T V GF+G G P P+TD+EI+ + ++ SV F
Sbjct: 106 VLVNMDMNDETWYVVRNTRGVTGFVGPGSKPVPLTDAEIKPL------GIKTDTISVDFG 159
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ + V G + G+V+ +D K + V +FGR TPVE+++ +V KI
Sbjct: 160 VGDEIAVIAGVWKDTAGVVQRMDFGKQTATINVDLFGRETPVEISFAEVRKI 211
>gi|73748761|ref|YP_308000.1| transcription antitermination protein NusG [Dehalococcoides sp.
CBDB1]
gi|147669527|ref|YP_001214345.1| transcription antitermination protein nusG [Dehalococcoides sp.
BAV1]
gi|289432786|ref|YP_003462659.1| NusG antitermination factor [Dehalococcoides sp. GT]
gi|73660477|emb|CAI83084.1| transcription antitermination protein NusG [Dehalococcoides sp.
CBDB1]
gi|146270475|gb|ABQ17467.1| transcription antitermination protein nusG [Dehalococcoides sp.
BAV1]
gi|288946506|gb|ADC74203.1| NusG antitermination factor [Dehalococcoides sp. GT]
Length = 177
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V YS E++ + + R+ + + + +P+E V V+ G++ ++ P
Sbjct: 6 KNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+EA + P V
Sbjct: 66 GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQMEA--ESPRVKVG 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177
>gi|282852730|ref|ZP_06262072.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 224-1]
gi|282556472|gb|EFB62092.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 224-1]
Length = 183
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F
Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETIRGKKQEVDEKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ + P
Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEP- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKE 180
>gi|116629026|ref|YP_814198.1| transcription antiterminator [Lactobacillus gasseri ATCC 33323]
gi|238853593|ref|ZP_04643962.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 202-4]
gi|311111179|ref|ZP_07712576.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri MV-22]
gi|116094608|gb|ABJ59760.1| transcription antitermination protein nusG [Lactobacillus gasseri
ATCC 33323]
gi|238833737|gb|EEQ26005.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri 202-4]
gi|311066333|gb|EFQ46673.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri MV-22]
Length = 183
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F
Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+ + P
Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEP- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKE 180
>gi|15839227|ref|NP_299915.1| transcription antitermination protein NusG [Xylella fastidiosa
9a5c]
gi|71275252|ref|ZP_00651539.1| transcription antitermination protein NusG [Xylella fastidiosa
Dixon]
gi|71899980|ref|ZP_00682126.1| transcription antitermination protein NusG [Xylella fastidiosa
Ann-1]
gi|170731251|ref|YP_001776684.1| transcription antitermination protein NusG [Xylella fastidiosa M12]
gi|18203340|sp|Q9PA81|NUSG_XYLFA RecName: Full=Transcription antitermination protein nusG
gi|9107869|gb|AAF85435.1|AE004071_3 transcription antitermination factor [Xylella fastidiosa 9a5c]
gi|71164061|gb|EAO13776.1| transcription antitermination protein NusG [Xylella fastidiosa
Dixon]
gi|71730267|gb|EAO32352.1| transcription antitermination protein NusG [Xylella fastidiosa
Ann-1]
gi|167966044|gb|ACA13054.1| transcription antitermination factor [Xylella fastidiosa M12]
Length = 185
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 74/183 (40%), Positives = 116/183 (63%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+SR + ++ +P+E VV +R G+K SE +FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVLI+ + ++ +H +K+TPKV+GF+G T + P P++ E + I+ +V+
Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADAILRRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++P V FE G+ V V DGPF F+G+V+ V+ EK+R+ V V+IFGR TPV+L + Q
Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLEFGQ 181
Query: 173 VEK 175
V+K
Sbjct: 182 VQK 184
>gi|161506934|ref|YP_001576888.1| transcription antiterminator [Lactobacillus helveticus DPC 4571]
gi|160347923|gb|ABX26597.1| transcription antiterminator [Lactobacillus helveticus DPC 4571]
Length = 185
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R+ G+ + + +P E V +G+K E + FP
Sbjct: 7 KQWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E++ ++ ++P
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K
Sbjct: 127 N--FEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK 180
>gi|323358913|ref|YP_004225309.1| transcription antiterminator [Microbacterium testaceum StLB037]
gi|323275284|dbj|BAJ75429.1| transcription antiterminator [Microbacterium testaceum StLB037]
Length = 376
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E+K +I R S ++ + ++ +P E VV ++ G++ R PG
Sbjct: 186 KWYVIHSYAGFERKVKANIEQRKSTLEVEDDIYQVEVPMEDVVEIKNGQRKMVNRVRIPG 245
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
YVL++ + + + ++ TP V GF+G NP+P+ E +++ + + +
Sbjct: 246 YVLVRMDLNEDTWSVVRHTPGVTGFVGNAHNPTPLRFEEAFNMLKSLVEVKEAAPTKAGA 305
Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
V FE GE + + +G FA G + + E ++ V V +F R TPV
Sbjct: 306 AKGAPVATRSLPAEVDFETGETITIKEGSFAGLPGTISEIKPESGKLTVLVSLFERETPV 365
Query: 167 ELAYNQVEKIV 177
EL+++QV K++
Sbjct: 366 ELSFDQVTKML 376
>gi|300857259|ref|YP_003782243.1| transcription antitermination protein NusG [Clostridium ljungdahlii
DSM 13528]
gi|300437374|gb|ADK17141.1| transcription antitermination protein NusG [Clostridium ljungdahlii
DSM 13528]
Length = 173
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L + ++ +P E V ++ G+K + ++ FP
Sbjct: 5 AKWYVVHTYSGYENKVKVNLEKTIENRNLYDWIDDVQVPMEEQVEIKDGKKKITLKKVFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI +MTD ++ +++T V GF+G G P P+TD E++ + + +V
Sbjct: 65 GYVLIHMIMTDDSWYIVRNTRGVTGFVGPGSKPVPLTDEEVKDM------GISEKPVNVD 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +F +++ ++ EK ++ V +FGR TPVEL +NQ+EKI
Sbjct: 119 ISVGENVKVKSGPLENFLAVIQEINTEKRKIKALVNMFGRETPVELDFNQIEKI 172
>gi|270308263|ref|YP_003330321.1| transcription antiterminator [Dehalococcoides sp. VS]
gi|270154155|gb|ACZ61993.1| transcription antiterminator [Dehalococcoides sp. VS]
Length = 177
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V YS E++ + + R+ + + + +P+E V V+ G++ ++ P
Sbjct: 6 KNWYVVHTYSGHEERVRKGLDERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+EA + P V
Sbjct: 66 GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQMEA--ESPRVKVG 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177
>gi|296282315|ref|ZP_06860313.1| NusG antitermination factor [Citromicrobium bathyomarinum JL354]
Length = 178
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K ++I R GL V E+ +P+E V +++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVRDAIISEAERLGLSEGVEEVEVPTETVTELKRGKKVQVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SS 120
GYVL K MTD +YH +K+TPKV GFLG G P +++ E VE A P S
Sbjct: 62 GYVLAKLNMTDDIYHLVKNTPKVTGFLGAGNKPQAISEKEAARYFGGVEEAKAAPKQQVS 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +E+G++V V DGPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE +
Sbjct: 122 IDYEIGDQVKVLDGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVELV 177
>gi|323342433|ref|ZP_08082665.1| transcription antitermination factor NusG [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463545|gb|EFY08739.1| transcription antitermination factor NusG [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 181
Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E + E++ R+ G++ + I + E+ + + G+KV R F
Sbjct: 6 EKKWYVVNTYSGHENRVKENLERRVESMGIEDALFRILVAEEKEIEYKNGKKVEKLRNLF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGY+ ++ +MTD+ ++ +++TP V GF+G+ G P PV+D EIE I+ ++ + Q+ +
Sbjct: 66 PGYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSDEEIESILRRMGMSDQKLI 125
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+ G+ V + GPFA G V +++ + + ++FGR TP E++Y +E +
Sbjct: 126 --VNFKEGDTVRILSGPFAGIEGTVDSMNNDSQTAMILTILFGRETPTEISYTDIEAL 181
>gi|206602630|gb|EDZ39111.1| Transcription antitermination protein (NusG) [Leptospirillum sp.
Group II '5-way CG']
Length = 184
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 103/174 (59%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ Y+ E + SI R+ L +V ++ +P + V +++G+K S R+ FP
Sbjct: 11 KKWYVIHTYAGFENRVKTSIEERVILKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ T++ I TPKV GFLG G P P+++ E+ + +++E+ P S
Sbjct: 71 GYVLVEMEPTEEAIQFILSTPKVTGFLGNGTTPIPMSNREVSELFDRIESGTAMPSPSQH 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F E V ++DGPF F+G++ VD + ++ V V IFGR TPVEL + QVE++
Sbjct: 131 FSEAETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184
>gi|331701823|ref|YP_004398782.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929]
gi|329129166|gb|AEB73719.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929]
Length = 182
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++ R G+ + +P + V+ G+ + F
Sbjct: 6 EKQWYVLHTYSGYENKVKMNLDSRKESMGMQDYIFRTVVPEQEEHEVKNGKDKVKMDKTF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + +
Sbjct: 66 PGYVLVEMIMTDQAWYIVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRH-- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ +G+ V + DG F +G V VD EK R+ V + +FGR T +L +NQ++
Sbjct: 124 EDLDVNIGDTVKIVDGAFTGLDGKVTEVDNEKQRLKVNIEMFGRETSTDLDFNQID 179
>gi|168187827|ref|ZP_02622462.1| transcription termination/antitermination factor NusG [Clostridium
botulinum C str. Eklund]
gi|169294323|gb|EDS76456.1| transcription termination/antitermination factor NusG [Clostridium
botulinum C str. Eklund]
Length = 173
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVSAM------GISEKNVDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINIEKQKIKALVNMFGRETPTELNFNQIEKL 172
>gi|315925316|ref|ZP_07921527.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621217|gb|EFV01187.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 179
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+WY+ YS E K SI + G++ ++ ++ +P++ VV + G+KV E++ FP
Sbjct: 9 PQWYVAHTYSGYENKVKASIEATVEHRGMEDVILQVEVPTQDVVETKNGKKVIKEKKLFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV+++ MTD ++ +++T V GF+G P P++ E+ + ++R +
Sbjct: 69 GYVIVQMYMTDDSWYVVRNTRGVTGFVGPASKPVPLSPEELRKM------GIRRQQVEID 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG++V + DGPF G V+ ++ EKS++ V + +FGR T EL ++Q EK+
Sbjct: 123 LAVGDQVKIIDGPFEGMAGEVEVINLEKSKIKVNLSVFGRETLTELDFDQAEKL 176
>gi|169634599|ref|YP_001708335.1| transcription antitermination protein [Acinetobacter baumannii SDF]
gi|169797458|ref|YP_001715251.1| transcription antitermination protein [Acinetobacter baumannii AYE]
gi|184156618|ref|YP_001844957.1| transcription antiterminator [Acinetobacter baumannii ACICU]
gi|213155728|ref|YP_002317773.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB0057]
gi|215484895|ref|YP_002327134.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB307-0294]
gi|239500983|ref|ZP_04660293.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB900]
gi|260556350|ref|ZP_05828569.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii ATCC 19606]
gi|294838493|ref|ZP_06783176.1| transcription antitermination protein [Acinetobacter sp. 6013113]
gi|294840899|ref|ZP_06785582.1| transcription antitermination protein [Acinetobacter sp. 6014059]
gi|294859137|ref|ZP_06796906.1| transcription antitermination protein [Acinetobacter sp. 6013150]
gi|301346453|ref|ZP_07227194.1| transcription antitermination protein [Acinetobacter baumannii
AB056]
gi|301512021|ref|ZP_07237258.1| transcription antitermination protein [Acinetobacter baumannii
AB058]
gi|301597215|ref|ZP_07242223.1| transcription antitermination protein [Acinetobacter baumannii
AB059]
gi|169150385|emb|CAM88282.1| transcription antitermination protein [Acinetobacter baumannii AYE]
gi|169153391|emb|CAP02518.1| transcription antitermination protein [Acinetobacter baumannii]
gi|183208212|gb|ACC55610.1| Transcription antiterminator [Acinetobacter baumannii ACICU]
gi|193076139|gb|ABO10752.2| transcription antitermination protein [Acinetobacter baumannii ATCC
17978]
gi|213054888|gb|ACJ39790.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB0057]
gi|213985795|gb|ACJ56094.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii AB307-0294]
gi|260410405|gb|EEX03704.1| transcription termination/antitermination factor NusG
[Acinetobacter baumannii ATCC 19606]
gi|322506505|gb|ADX01959.1| nusG [Acinetobacter baumannii 1656-2]
gi|323516384|gb|ADX90765.1| transcription antiterminator [Acinetobacter baumannii TCDC-AB0715]
Length = 177
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVMRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|86137179|ref|ZP_01055757.1| transcription termination/antitermination factor NusG [Roseobacter
sp. MED193]
gi|85826503|gb|EAQ46700.1| transcription termination/antitermination factor NusG [Roseobacter
sp. MED193]
Length = 177
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 115/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQRLEDEIDEVLVPTEEVIEIRRGKKVPTERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P +
Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+G++V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL Y QV K
Sbjct: 121 ISFEIGDKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDYTQVTK 175
>gi|328949968|ref|YP_004367303.1| NusG antitermination factor [Marinithermus hydrothermalis DSM
14884]
gi|328450292|gb|AEB11193.1| NusG antitermination factor [Marinithermus hydrothermalis DSM
14884]
Length = 185
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E K +I R G++ + ++ IP+E +V R+G +K R+
Sbjct: 1 MSIEWYAVHTYVGYEDKVKANIEKRAKALGMEDKIFQVLIPTEEIVEHREGGKKEVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVE 111
FPGYV ++ + D + + ++ TP V GF+GT P P+T E++ I+ + V
Sbjct: 61 LFPGYVFVQMDLGDNPEDPNEAWEVVRHTPGVTGFVGTATRPVPLTPDEVQGILEASGVA 120
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P V F+ G+ V V GPFA F G+V + E+++V V V IFGR TPVEL ++
Sbjct: 121 GKKEGPKPQVSFKEGDVVRVVSGPFADFTGVVSEISPERNKVKVLVSIFGRETPVELDFS 180
Query: 172 QV 173
QV
Sbjct: 181 QV 182
>gi|260550471|ref|ZP_05824681.1| transcription termination/antitermination factor NusG
[Acinetobacter sp. RUH2624]
gi|260406386|gb|EEW99868.1| transcription termination/antitermination factor NusG
[Acinetobacter sp. RUH2624]
gi|325124250|gb|ADY83773.1| transcription antitermination protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 177
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVMRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|300932756|ref|ZP_07148012.1| transcription antitermination protein NusG [Corynebacterium
resistens DSM 45100]
Length = 313
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQ YS E K ++ R G+D + E+ +P E V +R G++ +R+ PGY
Sbjct: 114 WYIVQCYSGYENKVKTNLEMRAQTLGVDEHIHEVVVPIEEVTELRDGKRKQVKRKLLPGY 173
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQR 116
VL++ + D + ++DTP V F+G P+PV E+ + E +
Sbjct: 174 VLVRMELEDAAWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPASTEEGTEE 233
Query: 117 -------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V +EVGE V + GPFAS + + +D +R+ V
Sbjct: 234 AGAVDVSATGVATPPKPASESVVVDYEVGESVTILSGPFASVSATISEIDTTANRLKAMV 293
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 294 SIFGRETPVELEFDQVEKL 312
>gi|315037590|ref|YP_004031158.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112]
gi|312275723|gb|ADQ58363.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112]
Length = 185
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E V +G+K E + FP
Sbjct: 7 KKWYVLHTYSGYEDKVKSDVLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++
Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLK--NQGQPAKEP 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+
Sbjct: 125 TANFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181
>gi|224475684|ref|YP_002633290.1| transcription antitermination protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|548394|sp|P36264|NUSG_STACT RecName: Full=Transcription antitermination protein nusG
gi|426473|emb|CAA53738.1| nusG [Staphylococcus carnosus]
gi|222420291|emb|CAL27105.1| transcription antitermination protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 182
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLTKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQM--GMKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V EVGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVEVEVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|118475193|ref|YP_892473.1| transcription antitermination protein NusG [Campylobacter fetus
subsp. fetus 82-40]
gi|118414419|gb|ABK82839.1| transcription termination/antitermination factor NusG
[Campylobacter fetus subsp. fetus 82-40]
Length = 176
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + G++ + E+ +P+E V+ ++ G++ +ER
Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P++D +I I+ +V P
Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINLILEKVNKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V V++GPFA+FNG V+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 ISFETGEVVRVTEGPFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 176
>gi|253681448|ref|ZP_04862245.1| transcription termination/antitermination factor NusG [Clostridium
botulinum D str. 1873]
gi|253561160|gb|EES90612.1| transcription termination/antitermination factor NusG [Clostridium
botulinum D str. 1873]
Length = 173
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVAQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVLAM------GISEKTIDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF I++ ++ EK ++ V +FGR TP EL +NQ+EKI
Sbjct: 120 SVGESVKVISGPLKSFVAIIQEINVEKQKIKALVNMFGRETPTELNFNQIEKI 172
>gi|262280707|ref|ZP_06058490.1| transcription termination/antitermination factor NusG
[Acinetobacter calcoaceticus RUH2202]
gi|299771836|ref|YP_003733862.1| transcription antitermination protein [Acinetobacter sp. DR1]
gi|262257607|gb|EEY76342.1| transcription termination/antitermination factor NusG
[Acinetobacter calcoaceticus RUH2202]
gi|298701924|gb|ADI92489.1| transcription antitermination protein [Acinetobacter sp. DR1]
Length = 177
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVLRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|255527829|ref|ZP_05394678.1| NusG antitermination factor [Clostridium carboxidivorans P7]
gi|296187253|ref|ZP_06855649.1| transcription termination/antitermination factor NusG [Clostridium
carboxidivorans P7]
gi|255508470|gb|EET84861.1| NusG antitermination factor [Clostridium carboxidivorans P7]
gi|296048124|gb|EFG87562.1| transcription termination/antitermination factor NusG [Clostridium
carboxidivorans P7]
Length = 173
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L + ++ +P E V V+ G++ + ++ FP
Sbjct: 5 ARWYVVHTYSGYENKVKANLEKTIENRNLYDWIDDVQVPMEEQVEVKDGKRKVTLKKVFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI VMTD ++ +++T V GF+G G P +TD E+ + + +V
Sbjct: 65 GYVLIHMVMTDDSWYVVRNTRGVTGFVGPGSKPVALTDEEVVSM------GIAEKAVNVD 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE + V GP +F +++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 119 VEVGESIKVKSGPLENFPAVIQEINTEKKKIKALVNMFGRETPVELDFNQIEKL 172
>gi|294814454|ref|ZP_06773097.1| Transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
gi|326442843|ref|ZP_08217577.1| transcription antitermination protein [Streptomyces clavuligerus
ATCC 27064]
gi|109942286|emb|CAJ84542.1| NusG protein [Streptomyces clavuligerus ATCC 27064]
gi|294327053|gb|EFG08696.1| Transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
Length = 304
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAKG 236
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 237 EPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 297 SFDQIQK 303
>gi|28199872|ref|NP_780186.1| transcription antitermination protein NusG [Xylella fastidiosa
Temecula1]
gi|182682624|ref|YP_001830784.1| transcription antitermination protein NusG [Xylella fastidiosa M23]
gi|32129806|sp|Q87A27|NUSG_XYLFT RecName: Full=Transcription antitermination protein nusG
gi|28057993|gb|AAO29835.1| transcription antitermination factor [Xylella fastidiosa Temecula1]
gi|182632734|gb|ACB93510.1| NusG antitermination factor [Xylella fastidiosa M23]
gi|307578905|gb|ADN62874.1| transcription antitermination protein NusG [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 185
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 74/183 (40%), Positives = 116/183 (63%), Gaps = 10/183 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS EK +++ R+SR + ++ +P+E VV +R G+K SE +FFP
Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61
Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEA 112
GYVLI+ + ++ +H +K+TPKV+GF+G T + P P++ E + I+ +V+
Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQD 121
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++P V FE G+ V V DGPF F+G+V+ V+ EK+R+ V V+IFGR TPV+L + Q
Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQ 181
Query: 173 VEK 175
V+K
Sbjct: 182 VQK 184
>gi|148381434|ref|YP_001255975.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A str. ATCC 3502]
gi|153933840|ref|YP_001385809.1| transcription antitermination protein NusG [Clostridium botulinum A
str. ATCC 19397]
gi|153936508|ref|YP_001389216.1| transcription antitermination protein NusG [Clostridium botulinum A
str. Hall]
gi|153940614|ref|YP_001392847.1| transcription antitermination protein NusG [Clostridium botulinum F
str. Langeland]
gi|168178819|ref|ZP_02613483.1| transcription termination/antitermination factor NusG [Clostridium
botulinum NCTC 2916]
gi|168181851|ref|ZP_02616515.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Bf]
gi|170755479|ref|YP_001783134.1| transcription antitermination protein NusG [Clostridium botulinum
B1 str. Okra]
gi|170761546|ref|YP_001788834.1| transcription antitermination protein NusG [Clostridium botulinum
A3 str. Loch Maree]
gi|226950946|ref|YP_002806037.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A2 str. Kyoto]
gi|237796955|ref|YP_002864507.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Ba4 str. 657]
gi|148290918|emb|CAL85054.1| transcription antitermination protein [Clostridium botulinum A str.
ATCC 3502]
gi|152929884|gb|ABS35384.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A str. ATCC 19397]
gi|152932422|gb|ABS37921.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A str. Hall]
gi|152936510|gb|ABS42008.1| transcription termination/antitermination factor NusG [Clostridium
botulinum F str. Langeland]
gi|169120691|gb|ACA44527.1| transcription termination/antitermination factor NusG [Clostridium
botulinum B1 str. Okra]
gi|169408535|gb|ACA56946.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A3 str. Loch Maree]
gi|182670290|gb|EDT82266.1| transcription termination/antitermination factor NusG [Clostridium
botulinum NCTC 2916]
gi|182674794|gb|EDT86755.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Bf]
gi|226842758|gb|ACO85424.1| transcription termination/antitermination factor NusG [Clostridium
botulinum A2 str. Kyoto]
gi|229263161|gb|ACQ54194.1| transcription termination/antitermination factor NusG [Clostridium
botulinum Ba4 str. 657]
gi|295320826|gb|ADG01204.1| transcription termination/antitermination factor NusG [Clostridium
botulinum F str. 230613]
gi|322807819|emb|CBZ05394.1| transcription antitermination protein NusG [Clostridium botulinum
H04402 065]
Length = 174
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L H + +I +P E V V+ G+K + ++ FP
Sbjct: 6 AKWYVVHTYSGYENKVKVNLQKTVDNRNLHHWIFDIQVPMEEQVEVKDGKKKITLKKTFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +MTD ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 66 GYVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEVLSM------GIKEKQPEVD 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V GP F ++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 120 VEVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173
>gi|323465328|gb|ADX77481.1| transcription termination/antitermination factor NusG
[Staphylococcus pseudintermedius ED99]
Length = 182
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ +
Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMGMNEKS-- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V ++ GPFAS G + ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVEVELGEQVRITSGPFASQVGEIHEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|239825679|ref|YP_002948303.1| transcription antitermination protein NusG [Geobacillus sp. WCH70]
gi|239805972|gb|ACS23037.1| NusG antitermination factor [Geobacillus sp. WCH70]
Length = 177
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G+ + I +P E + G+K ++++
Sbjct: 1 MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETDTKNGKKKATKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E+E I+ ++ +
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRM--GMPLT 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE ++Q+EKI
Sbjct: 119 EIDVDYELNETVRVKEGPFANFTGKIEEIDLDKRKVKVLVNMFGRETPVEFEFSQIEKI 177
>gi|242372754|ref|ZP_04818328.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
M23864:W1]
gi|242349527|gb|EES41128.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
M23864:W1]
Length = 182
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|50083574|ref|YP_045084.1| transcription antitermination protein [Acinetobacter sp. ADP1]
gi|49529550|emb|CAG67262.1| transcription antitermination protein [Acinetobacter sp. ADP1]
Length = 177
Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVMRSLNERIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|220930952|ref|YP_002507860.1| NusG antitermination factor [Halothermothrix orenii H 168]
gi|219992262|gb|ACL68865.1| NusG antitermination factor [Halothermothrix orenii H 168]
Length = 176
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K ++ R+ + ++ + I +P+E + +KG++ E+R F
Sbjct: 4 EKKWYVVHTYSGHENKVKANLEKRIKATDMEDKIFRILVPTEEKIESKKGKQKKVEKRIF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL++ +MTD ++ +++TP V GF+ +G P P+ E +HI+ + ++ +
Sbjct: 64 PGYVLVEMIMTDDSWYVVRNTPGVTGFVSSGTKPLPLQPEEAKHILRGM--GIEDDKIEL 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG++V + DGPF F G +K V ++S+V V V +FGR TP+EL ++Q+EKI
Sbjct: 122 DFGVGDKVKIVDGPFEEFIGEIKEVHPQQSKVKVLVSMFGRETPLELEFSQIEKI 176
>gi|228475251|ref|ZP_04059976.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis SK119]
gi|314937159|ref|ZP_07844506.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis subsp. hominis C80]
gi|228270716|gb|EEK12125.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis SK119]
gi|313655778|gb|EFS19523.1| transcription termination/antitermination factor NusG
[Staphylococcus hominis subsp. hominis C80]
Length = 182
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|326333421|ref|ZP_08199666.1| transcription termination/antitermination factor NusG
[Nocardioidaceae bacterium Broad-1]
gi|325948782|gb|EGD40877.1| transcription termination/antitermination factor NusG
[Nocardioidaceae bacterium Broad-1]
Length = 270
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ YS E + ++ R+ ++ + EI +P+E V ++ G++ +R PGY
Sbjct: 77 WFVIHTYSGMENRVKSNLENRIVSLNMEDYIHEIVVPTEEVPEIKNGQRKMVKRTVLPGY 136
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
VL++ +TD+ + ++ TP V GF+G P P++ +E+E+++
Sbjct: 137 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMTEVENMLAPAVVAQAEAEAAAAGE 196
Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ ++PV V F G+ V V DGPFA+ + + ++ E RV V IFGR
Sbjct: 197 AATASSGATGTAKKPVEVVDFAEGDSVTVVDGPFATLHATITELNAESQRVKALVEIFGR 256
Query: 163 VTPVELAYNQVEKI 176
TPVEL++NQ+EK+
Sbjct: 257 ETPVELSFNQIEKV 270
>gi|238855649|ref|ZP_04645949.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 269-3]
gi|260664910|ref|ZP_05865761.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii SJ-7A-US]
gi|282933598|ref|ZP_06338967.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
gi|238831715|gb|EEQ24052.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 269-3]
gi|260561393|gb|EEX27366.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii SJ-7A-US]
gi|281302253|gb|EFA94486.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
Length = 185
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ Y+ E K + R G+ + + P E V +G+K E + F
Sbjct: 6 AKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPQETKVETVRGKKQEVEEKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D EI I+ V+
Sbjct: 66 PGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILE--NQGVEAKK 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE V +++G F G + ++ E+K ++ V V +FGR T EL Y+QV+K
Sbjct: 124 PDIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK 180
>gi|223038971|ref|ZP_03609263.1| transcription termination/antitermination factor NusG
[Campylobacter rectus RM3267]
gi|255322049|ref|ZP_05363197.1| transcription termination/antitermination factor NusG
[Campylobacter showae RM3277]
gi|222879944|gb|EEF15033.1| transcription termination/antitermination factor NusG
[Campylobacter rectus RM3267]
gi|255300862|gb|EET80131.1| transcription termination/antitermination factor NusG
[Campylobacter showae RM3277]
Length = 176
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + + ++ + EI +P+E V+ ++ G+K +ER
Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVRDNHIEEQLKEIIVPTEDVIEIKNGKKKINERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P+++ +I I+ +V+ P
Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGEAKKPTPLSEKDINLILEKVQKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FF+ GE V +++GPFA+F GIV+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IFFDNGENVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVEILYSQVEKIV 176
>gi|268678989|ref|YP_003303420.1| transcription termination/antitermination factor NusG
[Sulfurospirillum deleyianum DSM 6946]
gi|268617020|gb|ACZ11385.1| transcription termination/antitermination factor NusG
[Sulfurospirillum deleyianum DSM 6946]
Length = 176
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E+ + I ++ G+ + +I +P+E V+ V+ G+K SER
Sbjct: 1 MAHKWYAIQTYAGSEQAVKKGIITLVNDHGIAEKLEQIVVPTEDVIEVKNGKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY K + ++H I+ PKV F+G + P+P+T+ +I I+ + E P
Sbjct: 61 YPGYAFAKLDLDTALWHLIQSLPKVGRFIGESKKPTPLTEKDIALILEKAEKKGA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V +++GPFA+F G V+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IFFETGESVRITEGPFANFTGSVEEYDMVHGKLTLNVSIFGRSTPVEILYSQVEKIV 176
>gi|223042705|ref|ZP_03612753.1| transcription termination/antitermination factor NusG
[Staphylococcus capitis SK14]
gi|314932760|ref|ZP_07840129.1| transcription termination/antitermination factor NusG
[Staphylococcus caprae C87]
gi|222443559|gb|EEE49656.1| transcription termination/antitermination factor NusG
[Staphylococcus capitis SK14]
gi|313654441|gb|EFS18194.1| transcription termination/antitermination factor NusG
[Staphylococcus caprae C87]
Length = 182
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDQSWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|290968177|ref|ZP_06559722.1| transcription termination/antitermination factor NusG [Megasphaera
genomosp. type_1 str. 28L]
gi|290781852|gb|EFD94435.1| transcription termination/antitermination factor NusG [Megasphaera
genomosp. type_1 str. 28L]
Length = 179
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + ++ ++ GL++++ I +P E V ++ G+K +R+ FP
Sbjct: 5 MKWYVIHTYSGYENKVMATLERKVKSMGLENVINRILVPMEDEVDMKDGKKRTVKRKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + D+ ++ +++TP V GF+G+ P+P+T+ E++ I+ + P +
Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPTPLTEEEVKSILKS-QGVDAEPKIQIA 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++GE+V ++ GPF +F + +++EK + + +FGR T VE+ Y+Q+EK
Sbjct: 124 VDIGEQVRITSGPFENFIATITEINKEKGTLKGLIDMFGRETSVEVDYSQIEK 176
>gi|300362324|ref|ZP_07058500.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri JV-V03]
gi|300353315|gb|EFJ69187.1| transcription termination/antitermination factor NusG
[Lactobacillus gasseri JV-V03]
Length = 183
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F
Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G PSP+ D EIE I+
Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKS--QGQPAKE 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV++
Sbjct: 124 QKADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVKE 180
>gi|319399715|gb|EFV87964.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis FRI909]
Length = 182
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIQSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|118443261|ref|YP_877185.1| transcription antitermination protein NusG [Clostridium novyi NT]
gi|118133717|gb|ABK60761.1| transcription termination/antitermination factor NusG [Clostridium
novyi NT]
Length = 173
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVLAM------GISEKNVDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172
>gi|260577197|ref|ZP_05845173.1| NusG antitermination factor [Rhodobacter sp. SW2]
gi|259020577|gb|EEW23897.1| NusG antitermination factor [Rhodobacter sp. SW2]
Length = 178
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 116/175 (66%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I ++ +GL + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKTAVAEAGLQDEIEEVLVPTEEVIEVRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ MT+K YH I +V GFLG P + DSE+ I+N+VE ++ P +
Sbjct: 61 MPGYVLVRMEMTNKGYHLISSINRVTGFLGPQGKPQAMRDSEVNAILNRVEEGLEAPRNL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE+V VSDGPF F G+V++VDE SR+ V V IFGR TP+EL + QV K
Sbjct: 121 IRFEIGEQVQVSDGPFEGFTGMVEDVDEGHSRLKVTVSIFGRATPLELEFTQVTK 175
>gi|239636935|ref|ZP_04677933.1| transcription termination/antitermination factor NusG
[Staphylococcus warneri L37603]
gi|239597483|gb|EEQ79982.1| transcription termination/antitermination factor NusG
[Staphylococcus warneri L37603]
gi|330686237|gb|EGG97849.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU121]
Length = 182
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ EK ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEAEKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|27467217|ref|NP_763854.1| transcription antitermination protein [Staphylococcus epidermidis
ATCC 12228]
gi|57866121|ref|YP_187773.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis RP62A]
gi|242241868|ref|ZP_04796313.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
W23144]
gi|251809953|ref|ZP_04824426.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
BCM-HMP0060]
gi|282875013|ref|ZP_06283888.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis SK135]
gi|293367912|ref|ZP_06614550.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis M23864:W2(grey)]
gi|38604831|sp|Q8CQ85|NUSG_STAES RecName: Full=Transcription antitermination protein nusG
gi|81675390|sp|Q5HRL6|NUSG_STAEQ RecName: Full=Transcription antitermination protein nusG
gi|27314759|gb|AAO03896.1|AE016744_299 transcription antitermination protein [Staphylococcus epidermidis
ATCC 12228]
gi|57636779|gb|AAW53567.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis RP62A]
gi|242234646|gb|EES36958.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
W23144]
gi|251806496|gb|EES59153.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296341|gb|EFA88860.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis SK135]
gi|291317941|gb|EFE58349.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis M23864:W2(grey)]
gi|329729454|gb|EGG65857.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU144]
gi|329734659|gb|EGG70966.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU028]
gi|329738062|gb|EGG74283.1| transcription termination/antitermination factor NusG
[Staphylococcus epidermidis VCU045]
Length = 182
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|255320104|ref|ZP_05361296.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SK82]
gi|262370138|ref|ZP_06063465.1| transcription antitermination protein [Acinetobacter johnsonii
SH046]
gi|262379961|ref|ZP_06073116.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SH164]
gi|255302822|gb|EET82047.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SK82]
gi|262298155|gb|EEY86069.1| transcription termination/antitermination factor NusG
[Acinetobacter radioresistens SH164]
gi|262315177|gb|EEY96217.1| transcription antitermination protein [Acinetobacter johnsonii
SH046]
Length = 177
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 110/174 (63%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQREADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVLYEKSRLTLTINVFNRPTQVELEFRQVEK 175
>gi|319891500|ref|YP_004148375.1| Transcription antitermination protein NusG [Staphylococcus
pseudintermedius HKU10-03]
gi|317161196|gb|ADV04739.1| Transcription antitermination protein NusG [Staphylococcus
pseudintermedius HKU10-03]
Length = 182
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ +
Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMGMNEKS-- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E+GE+V ++ GPFAS G + +++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVEVELGEQVRITSGPFASQVGEIHDIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|294675843|ref|YP_003576458.1| transcription antitermination protein NusG [Rhodobacter capsulatus
SB 1003]
gi|294474663|gb|ADE84051.1| transcription antitermination protein NusG [Rhodobacter capsulatus
SB 1003]
Length = 179
Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + GL + E+ +P+E V+ +R+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIKQAVIDKGLGDEIEEVLVPTEEVIEIRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PV 118
PGYVL++ MTD+ YH I +V GFLG P+P+ DSE+ I+N+ + P
Sbjct: 61 MPGYVLVRMDMTDRGYHAITSINRVTGFLGPQGKPTPMRDSEVNTILNRQGPTGEVVAPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + FE+GE V V+DGPF F+G+V+ VD+ R+ V V IFGR TPVEL + QV K
Sbjct: 121 NLIRFEIGENVSVTDGPFEGFSGMVEEVDDAAGRLKVTVSIFGRPTPVELEFTQVSK 177
>gi|256852096|ref|ZP_05557483.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 27-2-CHN]
gi|260661334|ref|ZP_05862247.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 115-3-CHN]
gi|282934888|ref|ZP_06340120.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
gi|297205029|ref|ZP_06922425.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii JV-V16]
gi|256615508|gb|EEU20698.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 27-2-CHN]
gi|260547789|gb|EEX23766.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 115-3-CHN]
gi|281301069|gb|EFA93381.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii 208-1]
gi|297149607|gb|EFH29904.1| transcription termination/antitermination factor NusG
[Lactobacillus jensenii JV-V16]
Length = 185
Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ Y+ E K + R G+ + + P E V +G+K E + F
Sbjct: 6 AKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPEETKVETVRGKKQEVEEKIF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D EI I+ V+
Sbjct: 66 PGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILE--NQGVEAKK 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE+GE V +++G F G + ++ E+K ++ V V +FGR T EL Y+QV+K
Sbjct: 124 PDIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK 180
>gi|237666465|ref|ZP_04526450.1| transcription termination/antitermination factor NusG [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|237657664|gb|EEP55219.1| transcription termination/antitermination factor NusG [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 182
Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L+ L+ +I +P E V+ + G++ S ++ FP
Sbjct: 14 ARWYVVHTYSGYENKVKANLEKAIENRNLESLIQDIQVPMEEVIEEKDGKQKVSLKKKFP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +M+D+ ++ +++T V GF+G G P P++D E+E + V +
Sbjct: 74 GYVLVKMLMSDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM------GVLEMPVDID 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + EK ++ V +FGR T EL +NQVEK+V
Sbjct: 128 LEVGESIKIISGPLRDSVATIQEIVLEKRKIKALVDMFGRETLAELDFNQVEKLV 182
>gi|149186890|ref|ZP_01865199.1| transcription antiterminator [Erythrobacter sp. SD-21]
gi|148829399|gb|EDL47841.1| transcription antiterminator [Erythrobacter sp. SD-21]
Length = 178
Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 86/176 (48%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K +SI R GL V E+ +P+E V V++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVRDSIIAEAERLGLSEGVEEVQVPTETVTEVKRGKKVQIERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SS 120
GYVL K MTD VYH +K+TPKV GFLG P ++D E VE A P S
Sbjct: 62 GYVLAKLNMTDDVYHLVKNTPKVTGFLGNNNKPQAISDKEAARYFGGVEEAKSAPKKQVS 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G++V V DGPFASFNG+V+ +D +K +V V V IFGR TPVEL + QVE +
Sbjct: 122 VDYEIGDQVKVLDGPFASFNGLVEELDFDKQKVKVSVSIFGRATPVELEFEQVELV 177
>gi|262375153|ref|ZP_06068387.1| transcription termination/antitermination factor NusG
[Acinetobacter lwoffii SH145]
gi|262310166|gb|EEY91295.1| transcription termination/antitermination factor NusG
[Acinetobacter lwoffii SH145]
Length = 177
Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+ GT E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK
Sbjct: 122 MFEPGEELLVVDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEK 175
>gi|154175492|ref|YP_001408646.1| transcription antitermination protein NusG [Campylobacter curvus
525.92]
gi|112803934|gb|EAU01278.1| transcription termination/antitermination factor NusG
[Campylobacter curvus 525.92]
Length = 176
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E I + G++ + E+ +P+E V+ ++ G++ +ER
Sbjct: 1 MAHKWYAIQTYAGSEMAVKRGIENLVKDHGIEEQLKEVIVPTEDVIEIKNGKQKINERTL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P++D +I I+ +V+ P
Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINTILEKVQKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FF+ GE V +++GPFA+F GIV+ D ++ + V IFGR TPV++ Y+QVEKI+
Sbjct: 120 IFFDEGESVRITEGPFANFTGIVEEYDMVHGKLRLNVSIFGRSTPVDILYSQVEKII 176
>gi|157165039|ref|YP_001466540.1| transcription antitermination protein NusG [Campylobacter concisus
13826]
gi|112800025|gb|EAT97369.1| transcription termination/antitermination factor NusG
[Campylobacter concisus 13826]
Length = 176
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY +Q Y+ E I + G++ + E+ +P+E V+ ++ G++ +ER
Sbjct: 1 MSHKWYAIQTYAGSEMAVKRGIENLVRDHGIEDQLKEVIVPTEDVIEIKNGKQKINERTL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + P+P+T+ +I I+ +V+ P
Sbjct: 61 YPGYAFACLDLDTALWHKIQSLPKVGRFIGEAKKPTPLTEKDINTILEKVQKRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V +++GPFA+F GIV+ D ++ + V IFGR TPV++ Y+QVEKI+
Sbjct: 120 IFFEDGESVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVDILYSQVEKII 176
>gi|70727472|ref|YP_254388.1| transcription antitermination protein [Staphylococcus haemolyticus
JCSC1435]
gi|68448198|dbj|BAE05782.1| transcription antitermination protein [Staphylococcus haemolyticus
JCSC1435]
Length = 182
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKCWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQLKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEPDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
>gi|126724847|ref|ZP_01740690.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2150]
gi|126706011|gb|EBA05101.1| transcription termination/antitermination factor NusG
[Rhodobacterales bacterium HTCC2150]
Length = 177
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 114/175 (65%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + +GL+ + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNYEKKIAEQIRTDVITAGLEDEIEEVLVPTEEVIEVRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVLI+ M+D+ +H I +V GFLG P P+ D+E+ I+N+VE P +
Sbjct: 61 MPGYVLIRMEMSDRGFHLINSINRVTGFLGQQGRPMPMRDAEVNQILNRVEEGEAAPRNL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+FFE+GE+V V+ GPF F G+V+ VD+E R+ V V IFGR TPVEL Y +V K
Sbjct: 121 IFFEIGEKVKVNGGPFEGFEGMVEEVDDENQRLKVTVSIFGRETPVELEYTEVTK 175
>gi|153952848|ref|YP_001393613.1| transcription antitermination protein NusG [Clostridium kluyveri
DSM 555]
gi|219853513|ref|YP_002470635.1| hypothetical protein CKR_0170 [Clostridium kluyveri NBRC 12016]
gi|146345729|gb|EDK32265.1| NusG [Clostridium kluyveri DSM 555]
gi|219567237|dbj|BAH05221.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 173
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L + ++ +P E V ++ G+K + ++ FP
Sbjct: 5 AKWYVVHTYSGYENKVKMNLEKTIENRELYDCIDDVQVPMEEQVEIKDGKKKITLKKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+ +MTD ++ +++T V GF+G G P P+TD E++ + + + +V
Sbjct: 65 GYVLVHMIMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDEEVKDM------GINEKLVNVD 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +F +++ ++ EK +V V +FGR TPVEL +NQ+EKI
Sbjct: 119 ILVGENVKVRSGPLENFLAVIQEINIEKRKVKALVNMFGRETPVELDFNQIEKI 172
>gi|255262997|ref|ZP_05342339.1| transcription termination/antitermination factor NusG
[Thalassiobium sp. R2A62]
gi|255105332|gb|EET48006.1| transcription termination/antitermination factor NusG
[Thalassiobium sp. R2A62]
Length = 177
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 113/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E I + + L + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVEEAELQDQIDEVLVPTEEVIEIRRGKKVTAERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P +
Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEESPRTL 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE+V V+DGPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMVEEVDEENLRLKVTVSIFGRATPVELEFTQVVK 175
>gi|260887710|ref|ZP_05898973.1| transcription termination/antitermination factor NusG [Selenomonas
sputigena ATCC 35185]
gi|330838618|ref|YP_004413198.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185]
gi|260862590|gb|EEX77090.1| transcription termination/antitermination factor NusG [Selenomonas
sputigena ATCC 35185]
gi|329746382|gb|AEB99738.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185]
Length = 178
Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 108/175 (61%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++ R+ G++ + + +P E ++ G+K +++ F
Sbjct: 4 EKKWYVIHTYSGYENKVKANLESRVHTMGMEDNIFNVIVPMEEEAEIKDGKKKLVKKKVF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY L++ ++ D+ ++ +++TP V GF+G+G P P++++E++HI+ + A ++PV +
Sbjct: 64 PGYALVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSEAEVKHILKSMGAEEEKPVVHI 123
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V ++ G F +F V V EK +V V V +FGR TP E++YN+VEKI
Sbjct: 124 DLEVGQAVRINSGTFENFAATVAEVLPEKGKVKVLVEMFGRETPAEVSYNEVEKI 178
>gi|289551664|ref|YP_003472568.1| Transcription antitermination protein NusG [Staphylococcus
lugdunensis HKU09-01]
gi|315659123|ref|ZP_07911988.1| transcription termination/antitermination factor NusG
[Staphylococcus lugdunensis M23590]
gi|289181195|gb|ADC88440.1| Transcription antitermination protein NusG [Staphylococcus
lugdunensis HKU09-01]
gi|315495847|gb|EFU84177.1| transcription termination/antitermination factor NusG
[Staphylococcus lugdunensis M23590]
Length = 182
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY V YS E K +++ R+ + + + IP E V+ G+ ++ F
Sbjct: 7 AKHWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKVVKKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++
Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQM--GLKEKT 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+GE+V + GPF++ G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 125 IDIELEIGEQVRIKSGPFSNQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182
>gi|18311400|ref|NP_563334.1| transcription antitermination protein NusG [Clostridium perfringens
str. 13]
gi|110800065|ref|YP_697107.1| transcription antitermination protein NusG [Clostridium perfringens
ATCC 13124]
gi|110803104|ref|YP_699676.1| transcription antitermination protein NusG [Clostridium perfringens
SM101]
gi|169344019|ref|ZP_02865009.1| transcription termination/antitermination factor NusG [Clostridium
perfringens C str. JGS1495]
gi|18146084|dbj|BAB82124.1| transcription antitermination protein [Clostridium perfringens str.
13]
gi|110674712|gb|ABG83699.1| transcription termination/antitermination factor NusG [Clostridium
perfringens ATCC 13124]
gi|110683605|gb|ABG86975.1| transcription termination/antitermination factor NusG [Clostridium
perfringens SM101]
gi|169297843|gb|EDS79939.1| transcription termination/antitermination factor NusG [Clostridium
perfringens C str. JGS1495]
Length = 173
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L+ L+ +I +P E + G+ + ++ FP
Sbjct: 5 ARWYVVHTYSGYENKVKANLEKTIENRNLESLILDIQVPMEESAEEKDGKIKVTLKKKFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++ VMTD+ ++ +++T V GF+G G P P+TD E+E + V + +
Sbjct: 65 GYVIVNMVMTDESWYVVRNTRGVTGFVGPGSKPVPLTDEEVESM------GVMKTAMDID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE + + G + F I++ ++ EK ++ V +FGR T EL +NQVEK+
Sbjct: 119 LEVGETINIISGALSGFAAIIQEINVEKGKIKALVDMFGRETLAELDFNQVEKL 172
>gi|170782938|ref|YP_001711272.1| transcription antitermination protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157508|emb|CAQ02699.1| transcription antitermination protein [Clavibacter michiganensis
subsp. sepedonicus]
Length = 345
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E++ +I R+ ++ + +I +P E VV ++ G++ R PG
Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
YVL++ + + + ++ TP V GF+G NP+P+ E ++ + +
Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 276
Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
V FE+GE + + +G FA G + + E ++ V V +F R TPVE
Sbjct: 277 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 336
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 337 LSFDQVTKL 345
>gi|295698613|ref|YP_003603268.1| transcription termination/antitermination factor NusG [Candidatus
Riesia pediculicola USDA]
gi|291157364|gb|ADD79809.1| transcription termination/antitermination factor NusG [Candidatus
Riesia pediculicola USDA]
Length = 182
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++Q +S E K + + + +D EI IPSE ++ ++ G++ SER+FFP
Sbjct: 8 MKWYVIQSFSGFETKVRKYLKKYIKLYSMDSYFGEIMIPSEGIIEMKGGQRRKSERKFFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ +M +K +H I+ PKV+GF+ GT + P+ V EIE I+ +++ +P
Sbjct: 68 GYVLVQMIMNEKTWHFIRGIPKVMGFVGGTSDRPASVHQREIEDIVEKLQKIGDQPRPKT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + VS GPFA FNGI + +D EK+R+ V V IFGR TPVEL ++QVEKI
Sbjct: 128 LFEPGEVIRVSSGPFADFNGIAEEIDYEKNRLKVSVSIFGRSTPVELDFSQVEKI 182
>gi|23097561|ref|NP_691027.1| transcription antitermination protein NusG [Oceanobacillus
iheyensis HTE831]
gi|22775784|dbj|BAC12062.1| transcriptional antiterminator [Oceanobacillus iheyensis HTE831]
Length = 178
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G++ + + +P + ++ G+K +++
Sbjct: 1 MEKNWYVVHTYSGYENKVKMNLEKRVESMGMEDKIFRVIVPEDEEAEIKNGKKKMVKKKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL + VMTD ++ +++TP V GF+G+ G P+P+ EI+ ++ ++ V P
Sbjct: 61 FPGYVLTEMVMTDDSWYVVRNTPGVTGFVGSSGHGAKPTPLMPGEIDVVLKRM--GVSEP 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V+DGPF F G ++++D +K ++ V V +FGR TPVEL ++QVEK+
Sbjct: 119 TVQVDFEIKENVRVTDGPFTDFTGSIEHIDTDKQKIKVHVNMFGRETPVELDFSQVEKL 177
>gi|254391410|ref|ZP_05006613.1| transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
gi|197705100|gb|EDY50912.1| transcription antitermination protein nusG [Streptomyces
clavuligerus ATCC 27064]
Length = 299
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAKG 231
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 232 EPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 291
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 292 SFDQIQK 298
>gi|77165799|ref|YP_344324.1| transcription antitermination protein NusG [Nitrosococcus oceani
ATCC 19707]
gi|254433234|ref|ZP_05046742.1| transcription termination/antitermination factor NusG
[Nitrosococcus oceani AFC27]
gi|76884113|gb|ABA58794.1| transcription antitermination protein nusG [Nitrosococcus oceani
ATCC 19707]
gi|207089567|gb|EDZ66838.1| transcription termination/antitermination factor NusG
[Nitrosococcus oceani AFC27]
Length = 177
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ +S E++ SI R+ R GL +I +P+E VV +R+G+K SER+F
Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSIEERVRRYGLQESFGDILVPTEEVVEMREGQKRKSERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ M D+ +H +KD P+V+GF+ GT + P+ +T++E E I+ ++ ++P
Sbjct: 61 FPGYVLVQMEMGDETWHLVKDVPRVLGFIGGTSDKPAAITEAEAEEILERIREGAEQPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE V V +GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEMVRVIEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176
>gi|257454929|ref|ZP_05620177.1| transcription termination/antitermination factor NusG
[Enhydrobacter aerosaccus SK60]
gi|257447639|gb|EEV22634.1| transcription termination/antitermination factor NusG
[Enhydrobacter aerosaccus SK60]
Length = 176
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIVQ +S EK+ S+ R++RS ++ +P+E V+ +R G+K SER+FFP
Sbjct: 1 MRWYIVQAFSGFEKQVQRSLIERINRSEYKESFGQVLVPTEEVIEMRDGKKRKSERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ M D +H +KD P+V+GF+G ENP+P+T E + I+N++ +P
Sbjct: 61 GYVLIEMDMNDNTWHLVKDCPRVMGFIGGTPENPAPITPKEADTILNRLNTNENKPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+V+ VD EKSR+ + V +F R TPVEL + QVEKI
Sbjct: 121 LFEPGEEVLVIDGPFTEFRGLVEKVDYEKSRLQLTVNVFNRPTPVELEFKQVEKI 175
>gi|303239009|ref|ZP_07325539.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
gi|302593347|gb|EFL63065.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
Length = 177
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 102/174 (58%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FP
Sbjct: 10 AKWYVVHTYSGYENKVKANLEKIVENRSMQEYILDIVVPMEEQIEIKDGKKKATLKKVFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +M+D+ ++ +++ V GF+G G P P++D E+ + V+ + +
Sbjct: 70 GYVLVKMIMSDESWYVVRNCRGVTGFVGPGSKPVPLSDEEVRVM------GVEEFMPVLD 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVG+ V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI
Sbjct: 124 YEVGDNVRVATGPLENFIGIVEEINFEKKKVRVSVSMFGRETPVELELFQIQKI 177
>gi|217030|dbj|BAA01261.1| virginiae butanolide receptor [Streptomyces virginiae]
Length = 319
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 132 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 191
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 192 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 251
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 252 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 311
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 312 SFDQIQK 318
>gi|57234268|ref|YP_181717.1| transcription antitermination protein NusG [Dehalococcoides
ethenogenes 195]
gi|57224716|gb|AAW39773.1| transcription antitermination protein NusG [Dehalococcoides
ethenogenes 195]
Length = 177
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V YS E++ + + R+ + + + +P+E V V+ G + ++ P
Sbjct: 6 KNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGLRRTIRKKILP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+EA + P V
Sbjct: 66 GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQMEA--ESPRVKVG 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177
>gi|87198854|ref|YP_496111.1| transcription antitermination protein nusG [Novosphingobium
aromaticivorans DSM 12444]
gi|87134535|gb|ABD25277.1| transcription antitermination protein nusG [Novosphingobium
aromaticivorans DSM 12444]
Length = 178
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K ++I R GL LV + +P+E V V++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVRDAIIAEAERIGLSQLVEAVEVPTETVTEVKRGKKVQVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SS 120
GYVL K M D +YH +K+TPKV GFLGT P P++D E E A P S
Sbjct: 62 GYVLAKLAMNDDIYHLVKNTPKVTGFLGTNGKPQPISDKEAARYFGAREQAAAEPRKNVS 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G+ V V+ GPFASFNG+V+ +D +KSRV V V IFGR TPVEL + +VE +
Sbjct: 122 VDYEIGDSVKVNAGPFASFNGVVEELDFDKSRVKVSVSIFGRATPVELGFEEVELV 177
>gi|187776563|ref|ZP_02993036.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC
15579]
gi|187775222|gb|EDU39024.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC
15579]
Length = 174
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L H + +I +P E V V+ G+K + ++ FP
Sbjct: 6 AKWYVVHTYSGYENKVKVNLQKTVDNRDLHHWILDIQVPMEEQVEVKDGKKKITLKKTFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +MTD ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 66 GYVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEVLSM------GIKEKQPEVD 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V V GP F ++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 120 VEVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173
>gi|119383494|ref|YP_914550.1| NusG antitermination factor [Paracoccus denitrificans PD1222]
gi|119373261|gb|ABL68854.1| transcription antitermination protein nusG [Paracoccus
denitrificans PD1222]
Length = 179
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EKK E+I + G++ + E+ +P+E V+ +R+G+KV SERRF
Sbjct: 1 MAKRWYSVSVLSNFEKKVAEAIRQAVVEKGIEDQIDEVLVPTEEVIEIRRGKKVTSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PV 118
PGYVL++ ++DK YH + +V GFLG P P+ D E+ I+++ P
Sbjct: 61 MPGYVLVRMELSDKTYHLVNSINRVTGFLGAQGKPMPMRDDEVNAILHRTGEGGAEVAPR 120
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F+VGE+V V+DGPF F+G+V+ VDE +R+ V V IFGR TPVEL + QV K
Sbjct: 121 NLIRFDVGEKVNVTDGPFEGFSGMVEEVDEAANRIKVTVSIFGRPTPVELEFTQVAK 177
>gi|150015031|ref|YP_001307285.1| transcription antitermination protein NusG [Clostridium
beijerinckii NCIMB 8052]
gi|149901496|gb|ABR32329.1| NusG antitermination factor [Clostridium beijerinckii NCIMB 8052]
Length = 181
Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L+ L+ +I +P E VV + G++ S ++ FP
Sbjct: 13 ARWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKFP 72
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +M D+ ++ +++T V GF+G G P P++D E+E + V +
Sbjct: 73 GYVLVKMLMGDEAWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM------GVLEVPVEID 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + +K +V V +FGR T EL +NQVEK+V
Sbjct: 127 LEVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEKLV 181
>gi|50954135|ref|YP_061423.1| transcription antitermination factor [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50950617|gb|AAT88318.1| transcription antitermination factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 315
Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E++ +I R+ ++ + E+ +P E VV ++ G++ R PG
Sbjct: 128 KWYVIHSYAGFERRVKSNIENRMVSMNMEDYIYEVQVPMEDVVEIKNGQRKMVNRVRIPG 187
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
YVL++ + + + ++ TP V GF+G NP+P+ E ++ + P
Sbjct: 188 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVQVDAAPAKGAAK 247
Query: 120 -----------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
V FE+GE + + +G FA G + + E ++ V V +F R TPVEL
Sbjct: 248 GQKAAARVIPAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVEL 307
Query: 169 AYNQVEKI 176
+++QV K+
Sbjct: 308 SFDQVTKL 315
>gi|331268400|ref|YP_004394892.1| NusG antitermination factor [Clostridium botulinum BKT015925]
gi|329124950|gb|AEB74895.1| NusG antitermination factor [Clostridium botulinum BKT015925]
Length = 173
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ + GL L+ +I +P E VV V++G+K ++++ FPG
Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKEGKKKVTQKKVFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + +
Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVLAM------GISEKTIDIDI 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLKSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172
>gi|89053051|ref|YP_508502.1| transcription antitermination protein nusG [Jannaschia sp. CCS1]
gi|88862600|gb|ABD53477.1| transcription antitermination protein nusG [Jannaschia sp. CCS1]
Length = 177
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 112/175 (64%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY V V SN EK+ E I ++ GL+ ++ E+ +P E V+ +R+G+KV RRF
Sbjct: 1 MAKRWYSVSVLSNFEKRIAEQIRTAVAEKGLEDVIEEVLVPEEDVIEIRRGKKVTVPRRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++ MTD YH I +V GFLG P P+ D E+ I+N+VE P S+
Sbjct: 61 MPGYVLVRMEMTDVGYHVISSIQRVTGFLGPQGRPMPMRDEEVNSILNRVEEGEASPRST 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F+VGE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL Y QV K
Sbjct: 121 ITFDVGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEYTQVSK 175
>gi|319408378|emb|CBI82033.1| transcription antitermination protein [Bartonella schoenbuchensis
R1]
Length = 182
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 107/175 (61%), Positives = 138/175 (78%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GR+V+SER+FF
Sbjct: 8 AARWYIVQAYSNFEKKVAEAIEKEAKQKGLDHLFEKIFVPTERVVEVRRGRRVDSERKFF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D EIEHI+ QV+ V+ P SS+
Sbjct: 68 PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREIEHILKQVQEGVESPKSSI 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 LFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVIIFGRPTPVDLEFSQVEKL 182
>gi|326382994|ref|ZP_08204683.1| transcription antitermination protein NusG [Gordonia neofelifaecis
NRRL B-59395]
gi|326198130|gb|EGD55315.1| transcription antitermination protein NusG [Gordonia neofelifaecis
NRRL B-59395]
Length = 249
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G+ R+ PGY
Sbjct: 57 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 116
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
+L++ + D+ + +++TP V GF+G PSP++ E+ +
Sbjct: 117 ILVRMELNDESWSAVRNTPGVTGFVGMTSRPSPLSIKEVLQFLMPRAEVRKAEAAKAAAA 176
Query: 113 ---------AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
A + V FEVGE V V DGPFA+ + V+ E+ +V V V IFGR
Sbjct: 177 AGESVEAAAAAASNLVEVDFEVGESVTVMDGPFATLPASISEVNTEQRKVKVLVSIFGRE 236
Query: 164 TPVELAYNQVEKI 176
TPVEL +NQVEK+
Sbjct: 237 TPVELGFNQVEKL 249
>gi|220904896|ref|YP_002480208.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869195|gb|ACL49530.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 190
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61
RWYIV YS E++ ++I L+ E+ +P+E+V+ + G++ S R+F+
Sbjct: 16 ARWYIVHTYSGFEQRVQKTINELRRTGQEQGLIEEVVVPTEKVIEPTKGGQQRTSTRKFY 75
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+++ VMTD +H ++ PKV GF+G P+P+ D E E I++ +E + P
Sbjct: 76 PGYVMVRMVMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDGEAERILSLMETRQETPRPKF 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V V +GPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 136 NFDRGDEVRVIEGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFAQVSK 189
>gi|226951781|ref|ZP_03822245.1| transcription antitermination protein [Acinetobacter sp. ATCC
27244]
gi|294649029|ref|ZP_06726475.1| transcription antitermination protein NusG [Acinetobacter
haemolyticus ATCC 19194]
gi|226837321|gb|EEH69704.1| transcription antitermination protein [Acinetobacter sp. ATCC
27244]
gi|292825060|gb|EFF83817.1| transcription antitermination protein NusG [Acinetobacter
haemolyticus ATCC 19194]
Length = 177
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGFEKQVMRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNLGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK V
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTV 177
>gi|262373977|ref|ZP_06067254.1| transcription termination/antitermination factor NusG
[Acinetobacter junii SH205]
gi|262310988|gb|EEY92075.1| transcription termination/antitermination factor NusG
[Acinetobacter junii SH205]
Length = 177
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGFEKQVLRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK V
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTV 177
>gi|293610085|ref|ZP_06692386.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827317|gb|EFF85681.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 177
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP
Sbjct: 2 KRWYIIHAYSGYEKQVMRSLTERIQRSAVAGSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P
Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177
>gi|294792777|ref|ZP_06757924.1| transcription termination/antitermination factor NusG [Veillonella
sp. 6_1_27]
gi|294794531|ref|ZP_06759667.1| transcription termination/antitermination factor NusG [Veillonella
sp. 3_1_44]
gi|294454861|gb|EFG23234.1| transcription termination/antitermination factor NusG [Veillonella
sp. 3_1_44]
gi|294456676|gb|EFG25039.1| transcription termination/antitermination factor NusG [Veillonella
sp. 6_1_27]
Length = 178
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP
Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVD 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ +K + + V +F R T VEL ++QVEK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPDKGTLKLSVEMFNRDTEVELEFSQVEK 176
>gi|291533635|emb|CBL06748.1| transcription antitermination protein nusG [Megamonas hypermegale
ART12/1]
Length = 175
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++ YS E K ++ ++ G++ + + +P E+ R G++ ER+
Sbjct: 3 LEKKWYVIHTYSGYENKVKANLERKIHSMGMEDKIFNVIVPVEKETEKRNGKEKVVERKI 62
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL++ ++ ++ ++ +++TP V GF+G+ P P+T+ E I+ + +
Sbjct: 63 FPGYVLLEMIVDERSWYIVRNTPGVTGFVGSNTKPVPLTEEEANRILKAMGM---DKPTE 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG++V ++ G F +F + +D KS++ V +FGR T +E ++Q+EKI
Sbjct: 120 LDVEVGDQVNITSGAFENFVATITEIDYSKSKIKGVVDMFGRETAIEADFDQIEKI 175
>gi|154148460|ref|YP_001407185.1| transcription antitermination protein NusG [Campylobacter hominis
ATCC BAA-381]
gi|153804469|gb|ABS51476.1| transcription termination/antitermination factor NusG
[Campylobacter hominis ATCC BAA-381]
Length = 176
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + GL+ + EI +P+E ++ ++ ++ R
Sbjct: 1 MALKWYAIQTYAGSEMAVKRAIESMATDLGLEEQIGEILVPTEDIIEIKNQKETIRSRSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + PSP+++ +I I+ +V P
Sbjct: 61 YPGYCFANLDLDTALWHRIQMLPKVSRFIGEAKRPSPLSEKDINLILEKVNKK-DAPKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++FE GE V + DGPFA+FNGIV+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IYFEQGETVRIIDGPFANFNGIVEEYDMLHGKLRLNVSIFGRSTPVEILYSQVEKIV 176
>gi|294496969|ref|YP_003560669.1| transcription termination/antitermination factor NusG [Bacillus
megaterium QM B1551]
gi|294346906|gb|ADE67235.1| transcription termination/antitermination factor NusG [Bacillus
megaterium QM B1551]
Length = 177
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ ++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKITKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G P+ + E+E I+ Q+ +
Sbjct: 61 FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQMGMDEKHA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI
Sbjct: 121 --DFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177
>gi|152990012|ref|YP_001355734.1| transcription antitermination protein NusG [Nitratiruptor sp.
SB155-2]
gi|151421873|dbj|BAF69377.1| transcriptional antitermination factor NusG [Nitratiruptor sp.
SB155-2]
Length = 176
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +QVYS EK ++I L + E+ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHKWYAIQVYSGSEKAVKKAIENLAEEENLKDRIKEVVVPTEDVIEVKSGKKKITERSI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV + ++ I+ PKV F+G + P+P++++++ IM + E P
Sbjct: 61 YPGYVFANMDLDIDLWQKIQSLPKVSRFIGESKKPTPISEADVRKIMEKAEKKGA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ +E GE V +++GPFA+F G+V+ D E ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 ISYEPGEMVRITEGPFANFTGVVEEYDMEHGKLKLNVSIFGRSTPVEILYTQVEKII 176
>gi|148273972|ref|YP_001223533.1| putative transcription antitermination protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831902|emb|CAN02873.1| putative transcription antitermination protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 340
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y+ E++ +I R+ ++ + +I +P E VV ++ G++ R PG
Sbjct: 152 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 211
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
YVL++ + + + ++ TP V GF+G NP+P+ E ++ + +
Sbjct: 212 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 271
Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
V FE+GE + + +G FA G + + E ++ V V +F R TPVE
Sbjct: 272 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 331
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 332 LSFDQVTKL 340
>gi|124514455|gb|EAY55968.1| transcription antitermination protein (NusG) [Leptospirillum
rubarum]
Length = 184
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 101/174 (58%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ Y+ E + SI R+ L +V ++ +P + V +++G+K S R+ FP
Sbjct: 11 KNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ T++ I TPKV GFLG G P P++ E+ + +++E+ P S
Sbjct: 71 GYVLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELFDRIESGTAMPSPSQH 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F E V ++DGPF F+G++ VD + ++ V V IFGR TPVEL + QVE++
Sbjct: 131 FSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184
>gi|269798566|ref|YP_003312466.1| NusG antitermination factor [Veillonella parvula DSM 2008]
gi|282849078|ref|ZP_06258466.1| transcription termination/antitermination factor NusG [Veillonella
parvula ATCC 17745]
gi|269095195|gb|ACZ25186.1| NusG antitermination factor [Veillonella parvula DSM 2008]
gi|282581196|gb|EFB86591.1| transcription termination/antitermination factor NusG [Veillonella
parvula ATCC 17745]
Length = 178
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP
Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVD 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VEL ++QVEK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEK 176
>gi|319443086|ref|ZP_07992242.1| transcription antitermination protein NusG [Corynebacterium
variabile DSM 44702]
Length = 285
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E V V+ G+K +++ PGY
Sbjct: 86 WYIIQCYSGYENKVKTNLEMRAQTLGVDQQIHEVVVPIEEVTQVKDGKKKIVKQKLLPGY 145
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------------- 109
VL++ + D + I+DTP V F+G P+PV E+ +
Sbjct: 146 VLVRVELDDPSWSVIRDTPGVTSFVGNAGEPTPVKIREVAKFLLPPETATVPADAEGADS 205
Query: 110 ------------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ V +EVGE V V GPFAS + + +D S++ V
Sbjct: 206 ASGVDVSATGVAMAPTANSNQVEVDYEVGESVTVLSGPFASVSATISEIDAANSKLKALV 265
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 266 SIFGRETPVELEFDQVEKL 284
>gi|297179994|gb|ADI16219.1| transcription antiterminator [uncultured bacterium HF0010_16H03]
Length = 175
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q YS E+K ++ ++ + L EI IP+E++V ++ G K +ER+FFPGY
Sbjct: 3 WYVIQAYSGYEQKVKIALEEKIELNNLSDKFGEILIPTEQIVELKGGSKKTTERKFFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+LI+ ++ D + ++ T +V GF+ GT + P P+++ ++ +I+N++E P +
Sbjct: 63 ILIQMLLEDDSWQLVQSTARVSGFVGGTKDRPLPISEDDVNNIINRIEVGEDAPAPKTIY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V DGPF FNG+V+NVD E++ V V V I GR TPV+L + Q+EK
Sbjct: 123 EPGEVVRVCDGPFNDFNGVVENVDYERNMVKVSVQILGRATPVDLEFMQIEK 174
>gi|254383188|ref|ZP_04998542.1| transcription antitermination protein nusG [Streptomyces sp. Mg1]
gi|194342087|gb|EDX23053.1| transcription antitermination protein nusG [Streptomyces sp. Mg1]
Length = 303
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 175
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 235
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 236 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 295
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 296 SFDQIQK 302
>gi|289450232|ref|YP_003475548.1| transcription termination/antitermination factor NusG
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184779|gb|ADC91204.1| transcription termination/antitermination factor NusG
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 180
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K +++ + GL + E+++P E V ++ G+K +++ +PGY
Sbjct: 14 WYVIHTYSGYENKVKDTLEQIVENRGLQDYIQEVSVPVEEQVEIKDGKKKVVQKKLYPGY 73
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K ++TD++++ +++T V GF+G P P+++ E+ IM ++ + +
Sbjct: 74 VLVKMILTDEMWYIVRNTRGVTGFVGP-NKPVPLSEEEL-AIMGLLKDWD----PVIDYA 127
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VG+ V V +GP SF G V+ ++ EK +V V V +FGR TPVEL + QV +++
Sbjct: 128 VGDSVKVINGPLESFIGTVEEINMEKKKVRVLVSMFGRETPVELEFTQVLRLL 180
>gi|218296037|ref|ZP_03496806.1| NusG antitermination factor [Thermus aquaticus Y51MC23]
gi|218243414|gb|EED09943.1| NusG antitermination factor [Thermus aquaticus Y51MC23]
Length = 184
Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 66/183 (36%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E+KA ++ R+ G++ + ++ IP+E VV VR+G +K +R+
Sbjct: 1 MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVEVREGGKKEVVKRK 60
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ ++ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 61 LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ EK +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVGFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180
Query: 173 VEK 175
V K
Sbjct: 181 VVK 183
>gi|34556887|ref|NP_906702.1| transcription antitermination protein NusG [Wolinella succinogenes
DSM 1740]
gi|34482602|emb|CAE09602.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Wolinella succinogenes]
Length = 176
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY +Q YS E+ +I + + ++ + +I +P+E ++ V+ +K +ER
Sbjct: 1 MSFDWYAIQTYSGSEQSVKRAIENLIRENKIEDRLEQIVVPTEDIIEVKNNKKKITERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV IK + +++H I+ P+V F+G + P+P+++++I I+ +V+ P
Sbjct: 61 YPGYVFIKVSLDTELWHLIQSLPRVGRFIGEAKKPTPLSEADINTILEKVKNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V +++GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 VSFEAGEVVRITEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|302536235|ref|ZP_07288577.1| transcription termination/antitermination factor NusG [Streptomyces
sp. C]
gi|302445130|gb|EFL16946.1| transcription termination/antitermination factor NusG [Streptomyces
sp. C]
Length = 304
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKQAAEEAG 236
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 237 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 296
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 297 SFDQIQK 303
>gi|295702336|ref|YP_003595411.1| transcription termination/antitermination factor NusG [Bacillus
megaterium DSM 319]
gi|294799995|gb|ADF37061.1| transcription termination/antitermination factor NusG [Bacillus
megaterium DSM 319]
Length = 177
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ ++ ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKVTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G P+ + E+E I+ Q+ +
Sbjct: 61 FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQMGMDEKHA 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI
Sbjct: 121 --DFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177
>gi|318056665|ref|ZP_07975388.1| transcription antitermination protein [Streptomyces sp. SA3_actG]
gi|318079221|ref|ZP_07986553.1| transcription antitermination protein [Streptomyces sp. SA3_actF]
Length = 303
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 116 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 175
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 235
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 296 SFDQIQK 302
>gi|303228911|ref|ZP_07315722.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-134-V-Col7a]
gi|303231237|ref|ZP_07317975.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-049-V-Sch6]
gi|302514144|gb|EFL56148.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-049-V-Sch6]
gi|302516437|gb|EFL58368.1| transcription termination/antitermination factor NusG [Veillonella
atypica ACS-134-V-Col7a]
Length = 178
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP
Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVD 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++QVEK
Sbjct: 124 VEVGETVRITSGAFEDRLGVITEINPEKGTLKLNVEMFNRDTEVEVEFSQVEK 176
>gi|15896397|ref|NP_349746.1| transcription antitermination protein NusG [Clostridium
acetobutylicum ATCC 824]
gi|15026215|gb|AAK81086.1|AE007810_5 Transcription antiterminator NusG [Clostridium acetobutylicum ATCC
824]
Length = 173
Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K +I + L +L+ +I +P + V + G+K + ++ FP
Sbjct: 5 AKWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIK VMTD+ ++ +++T GF+G G P P+TD E++ + ++ V+S+
Sbjct: 65 SYVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSM------GIREKVASID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 119 IVVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 172
>gi|256763353|ref|ZP_05503933.1| transcription antitermination protein NusG [Enterococcus faecalis
T3]
gi|256684604|gb|EEU24299.1| transcription antitermination protein NusG [Enterococcus faecalis
T3]
Length = 180
Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ S E K +I R G+ + + +P E V+ G++ + F
Sbjct: 5 ERNWYVLH-LSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++
Sbjct: 64 PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ-- 121
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + +G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 122 SDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 179
>gi|325964183|ref|YP_004242089.1| transcription termination/antitermination factor NusG [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470270|gb|ADX73955.1| transcription termination/antitermination factor NusG [Arthrobacter
phenanthrenivorans Sphe3]
Length = 274
Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 92 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 151
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 152 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 211
Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV
Sbjct: 212 QHQTPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 271
Query: 174 EKI 176
KI
Sbjct: 272 TKI 274
>gi|238916244|ref|YP_002929761.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC
27750]
gi|238871604|gb|ACR71314.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC
27750]
Length = 178
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 100/175 (57%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K +I + L + E+ +P E VV ++ G K ++++ FP
Sbjct: 4 AKWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
GYVL+K VM D ++ +++T V GF+G G P P+T +EI+++ +E + +PV
Sbjct: 64 GYVLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQF 123
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG++V + G + G + N++E K + + V +FGR TPVE+ + V+ +
Sbjct: 124 AGKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVKLL 178
>gi|1709422|sp|P27309|NUSG_STRVG RecName: Full=Transcription antitermination protein nusG; AltName:
Full=Butanolide receptor
gi|1217911|dbj|BAA09301.1| NusG like protein [Streptomyces virginiae]
Length = 299
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 231
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
AV+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 232 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 292 SFDQIQK 298
>gi|325510553|gb|ADZ22189.1| transcription antitermination protein NusG [Clostridium
acetobutylicum EA 2018]
Length = 178
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K +I + L +L+ +I +P + V + G+K + ++ FP
Sbjct: 10 AKWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIK VMTD+ ++ +++T GF+G G P P+TD E++ + ++ V+S+
Sbjct: 70 SYVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSM------GIREKVASID 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE V V GP +++ ++ EK ++ V +FGR TPVEL +NQ+EK+
Sbjct: 124 IVVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 177
>gi|254458743|ref|ZP_05072167.1| transcription termination/antitermination factor NusG
[Campylobacterales bacterium GD 1]
gi|207084509|gb|EDZ61797.1| transcription termination/antitermination factor NusG
[Campylobacterales bacterium GD 1]
Length = 175
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y E+ +I + GL ++E+ +P+E V+ V+ G+K +ER
Sbjct: 1 MAHQWYSIQTY-GSERAVRIAILNMIEEMGLQDFISEVIVPTEDVIEVKDGKKKITERSL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV + +V H I PKV GF+G P+P+++ +I I+++V P
Sbjct: 60 YSGYVFANIDLNTEVQHLITALPKVSGFIGEANTPTPLSEHDINVILDRVNNRAA-PKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V+F+ GE V + DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 119 VYFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175
>gi|239943560|ref|ZP_04695497.1| putative transcription antitermination factor NusG [Streptomyces
roseosporus NRRL 15998]
gi|239990013|ref|ZP_04710677.1| putative transcription antitermination factor NusG [Streptomyces
roseosporus NRRL 11379]
Length = 299
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 232 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 291
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 292 SFDQIQK 298
>gi|254467958|ref|ZP_05081364.1| transcription termination/antitermination factor NusG [beta
proteobacterium KB13]
gi|207086768|gb|EDZ64051.1| transcription termination/antitermination factor NusG [beta
proteobacterium KB13]
Length = 178
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT RWY VQ YS EK + + R+ S + ++ +P E VV ++ G+K SERR
Sbjct: 1 MTKRWYAVQAYSGYEKIVQKGLLERIEISNIKDQFGDVLVPVEEVVELKAGQKTISERRL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYVL++ M D +H ++ TPKV F+G P+P+ D E+E I+ +++ + P
Sbjct: 61 YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSALKPTPIKDKEVELILRRMDDSKVNPTQ 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE + V DGPF F+G V+ ++ EK+++ VEVVIFGR TPVEL + Q++K
Sbjct: 121 KLTFEVGESIRVIDGPFKDFSGSVQEINYEKNKLRVEVVIFGRATPVELDFGQIQK 176
>gi|254517457|ref|ZP_05129513.1| transcription antitermination protein NusG [Clostridium sp.
7_2_43FAA]
gi|226911206|gb|EEH96407.1| transcription antitermination protein NusG [Clostridium sp.
7_2_43FAA]
Length = 173
Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L L+ +I +P E VV + G++ S ++ FP
Sbjct: 5 ARWYVVHTYSGYENKVKANLEKTIENRNLQSLLQDIQVPMEEVVEEKDGKQKISLKKKFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K +MTD+ ++ +++T V GF+G P P+TD E+E + VQ +
Sbjct: 65 GYVLVKMLMTDESWYVVRNTRGVTGFVGPASKPVPLTDEEVESM------GVQEAPVEID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE V V GP F I++ ++ EK ++ + +FGR T EL + QVEK+V
Sbjct: 119 LEVGESVRVISGPLREFVAIIQEINLEKRKIKALIDMFGRETLAELEFTQVEKLV 173
>gi|148653838|ref|YP_001280931.1| NusG antitermination factor [Psychrobacter sp. PRwf-1]
gi|148572922|gb|ABQ94981.1| transcription antitermination protein nusG [Psychrobacter sp.
PRwf-1]
Length = 176
Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIVQ +S EK+ + R++RS E+ +P+E VV ++ G+K SER+FFP
Sbjct: 1 MRWYIVQAFSGYEKQVQRYLTDRINRSEFADKFGEVLVPTEEVVEMKDGKKRKSERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D +H + D P++ GF+G ENP+P+T E + I+N+++ + + P
Sbjct: 61 GYVLVEMEMNDDTWHIVNDCPRITGFIGGTPENPAPITKVEADRILNRLKQSEEAPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+V+ VD EKS++ + V +F R T VEL +++VEK+
Sbjct: 121 LFEPGEEVLVIDGPFTDFKGLVEKVDYEKSKLQLTVNVFNRPTQVELEFSKVEKL 175
>gi|182436668|ref|YP_001824387.1| putative transcription antitermination factor NusG [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326777290|ref|ZP_08236555.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1]
gi|548396|sp|P36260|NUSG_STRGR RecName: Full=Transcription antitermination protein nusG
gi|603589|emb|CAA51296.1| NusG [Streptomyces griseus]
gi|178465184|dbj|BAG19704.1| putative transcription antitermination factor NusG [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326657623|gb|EGE42469.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1]
Length = 294
Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|313679512|ref|YP_004057251.1| transcription antitermination protein nusg [Oceanithermus profundus
DSM 14977]
gi|313152227|gb|ADR36078.1| transcription antitermination protein nusG [Oceanithermus profundus
DSM 14977]
Length = 189
Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 13/186 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E K E++ R G+ + ++ IP+E +V R+G +K R+
Sbjct: 1 MSIEWYAVHTYVGYEDKVKENLEKRARALGMQDKIFQVLIPTEEIVEHREGGKKETVYRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIM-- 107
FPGYV ++ + D + + +++TP V G +GT E P P+T E++ I+
Sbjct: 61 LFPGYVFVQMDLGDNPEDPNEAWEVVRNTPGVTGVVGTSEGGKYRPVPLTPDEVQRILEV 120
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ + + P V F+ G+ V V GPFA F G+V ++ E+++V V V IFGR TPVE
Sbjct: 121 SGLAGRKESPKPQVTFKEGDVVRVVSGPFADFTGVVSEINPERNKVKVLVSIFGRETPVE 180
Query: 168 LAYNQV 173
L ++QV
Sbjct: 181 LDFSQV 186
>gi|312144260|ref|YP_003995706.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus']
gi|311904911|gb|ADQ15352.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus']
Length = 176
Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 65/171 (38%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS EKK ++ R++ +G++ + I +P+E + +KG+ ++R FPG
Sbjct: 6 KWYVVHTYSGHEKKVKANLEKRIASTGMEDNIFRILVPTEEKIEKKKGKDEVVKKRIFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L++ + DK ++ +K+TP VIGF+ G P PV EI++I+ + + SV F
Sbjct: 66 YILLQMDLNDKSWYVVKNTPGVIGFVSGGNKPLPVEKDEIDNILRSM--GEKAKKVSVEF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
EVG+++ V+ GPF F GIVK + E+ +V V V +FGR TPVEL ++Q++
Sbjct: 124 EVGDQIVVTSGPFEDFEGIVKEIHPEQGKVKVLVSMFGRETPVELEFSQIK 174
>gi|282860792|ref|ZP_06269858.1| NusG antitermination factor [Streptomyces sp. ACTE]
gi|282564528|gb|EFB70064.1| NusG antitermination factor [Streptomyces sp. ACTE]
Length = 297
Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 110 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 169
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 229
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 230 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 290 SFDQIQK 296
>gi|325844403|ref|ZP_08168130.1| transcription termination/antitermination factor NusG [Turicibacter
sp. HGF1]
gi|325489077|gb|EGC91461.1| transcription termination/antitermination factor NusG [Turicibacter
sp. HGF1]
Length = 178
Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ Y+ E K + ++ R+ + + + IP E+ V ++ G + R+
Sbjct: 1 MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ + TD ++ +++TP V GFLG+ P P+ E+ I+ ++ +
Sbjct: 61 FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVMPILKKM--GITSV 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
S+ +VG+RV V+ GPF+ G ++++D+E S+V V V +FGR TPVEL +NQ+
Sbjct: 119 EVSLDIQVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174
>gi|268316663|ref|YP_003290382.1| NusG antitermination factor [Rhodothermus marinus DSM 4252]
gi|262334197|gb|ACY47994.1| NusG antitermination factor [Rhodothermus marinus DSM 4252]
Length = 186
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 110/174 (63%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ +S EKK + + + R GL V +I IP+E V +R G+K ER FFP
Sbjct: 11 RKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
GY+LI+AV+ ++ H I + P V+GFLG+G+ P+P+ E+ I+ +V+ A + +
Sbjct: 71 GYILIEAVLDRELQHLIANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQPEI 130
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G+ V + +GPF +F G+V+ V +K ++ V V IFGR TP+E+ Y QVE+
Sbjct: 131 PFKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184
>gi|291437861|ref|ZP_06577251.1| transcription antitermination protein nusG [Streptomyces ghanaensis
ATCC 14672]
gi|291340756|gb|EFE67712.1| transcription antitermination protein nusG [Streptomyces ghanaensis
ATCC 14672]
Length = 294
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|744230|prf||2014256A nusG gene
Length = 294
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|320009119|gb|ADW03969.1| NusG antitermination factor [Streptomyces flavogriseus ATCC 33331]
Length = 288
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 160
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 220
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 221 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 281 SFDQIQK 287
>gi|34112954|gb|AAQ62399.1| predicted transcription antiterminator NusG [uncultured marine
gamma proteobacterium EBAC31A08]
gi|37912939|gb|AAR05271.1| predicted transcription antiterminator NusG [uncultured marine
gamma proteobacterium EB000-45B06]
gi|40063166|gb|AAR38003.1| transcription antitermination protein NusG [uncultured marine
bacterium 562]
Length = 175
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q YS E+K ++ ++ +GL EI IP+E++V ++ G K +ER+FFPGY
Sbjct: 3 WYVIQAYSGYEQKVKIALEEKIELNGLSEKFGEILIPTEQIVELKGGTKKTTERKFFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+LI+ ++ D + ++ TP+V GF+ GT + P P+++ ++ I+N++E P +
Sbjct: 63 ILIEMLLEDDSWQLVQSTPRVSGFVGGTKDRPLPISEDDVNSIINRIEVGEDAPAPKTIY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E GE V V DGPF FNG+V+NVD E++ V V V I GR TPV+L + Q+EK
Sbjct: 123 EPGEVVRVCDGPFNDFNGVVENVDYERNMVKVAVQILGRATPVDLEFIQIEK 174
>gi|239980079|ref|ZP_04702603.1| putative transcription antitermination factor NusG [Streptomyces
albus J1074]
gi|291451933|ref|ZP_06591323.1| NusG protein [Streptomyces albus J1074]
gi|291354882|gb|EFE81784.1| NusG protein [Streptomyces albus J1074]
Length = 287
Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 280 SFDQIQK 286
>gi|312897640|ref|ZP_07757057.1| transcription termination/antitermination factor NusG [Megasphaera
micronuciformis F0359]
gi|310621273|gb|EFQ04816.1| transcription termination/antitermination factor NusG [Megasphaera
micronuciformis F0359]
Length = 179
Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS EKK +++ ++ GL++++ I +P E + V+ GRK R+ +
Sbjct: 4 EKNWYVIHTYSGYEKKVKDNLERKVRSMGLENVIERILVPEEDEIDVKDGRKRTVRRKIY 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++ + D+ ++ +++TP V GF+G+ P P+ E+ I+ + + +
Sbjct: 64 PGYVFVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLEPQEVRRILKS-QGIEKEVRPQI 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
E+GE+V + GPF +F + ++ EK + + +FGR T VE+ Y+Q+EK
Sbjct: 123 SVEIGEQVRIISGPFDNFYATITEINNEKGTLKGLIDMFGRETSVEVDYSQIEK 176
>gi|293375376|ref|ZP_06621657.1| transcription termination/antitermination factor NusG [Turicibacter
sanguinis PC909]
gi|292645929|gb|EFF63958.1| transcription termination/antitermination factor NusG [Turicibacter
sanguinis PC909]
Length = 178
Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RWY+VQ Y+ E K + ++ R+ + + + IP E+ V ++ G + R+
Sbjct: 1 MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ + TD ++ +++TP V GFLG+ P P+ E+ I+ ++ +
Sbjct: 61 FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVVPILKKM--GITSV 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
S+ +VG+RV V+ GPF+ G ++++D+E S+V V V +FGR TPVEL +NQ+
Sbjct: 119 EVSLDIQVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174
>gi|313893043|ref|ZP_07826620.1| transcription termination/antitermination factor NusG [Veillonella
sp. oral taxon 158 str. F0412]
gi|313442396|gb|EFR60811.1| transcription termination/antitermination factor NusG [Veillonella
sp. oral taxon 158 str. F0412]
Length = 178
Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP
Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P +V
Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPTINVD 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++Q+EK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176
>gi|238018607|ref|ZP_04599033.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748]
gi|237865078|gb|EEP66368.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748]
Length = 178
Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP
Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + ++P ++
Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKS-QGLDKKPSINID 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++Q+EK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176
>gi|304439415|ref|ZP_07399326.1| transcription termination/antitermination factor NusG
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372111|gb|EFM25706.1| transcription termination/antitermination factor NusG
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 179
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY++ YS E K ++ + ++ ++ +I +P E V + G + ER+ F
Sbjct: 10 TAKWYVIHTYSGHENKVKANMEAMVQNRHMEDVILDIQVPMEEYVEEKDGVAKSKERKLF 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K +M D+ ++ +++T V GF+G G P P++D E+ + +
Sbjct: 70 PSYVLVKMIMNDETWYLVRNTRGVTGFVGPGSKPVPLSDEEVLAL-----GVADKKEFFG 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V DGPF F G++ + EK +V V + +FGR T VEL++NQ+ KI
Sbjct: 125 GFEVGESVKVKDGPFEDFVGVIDAMSYEKGKVDVVISMFGRDTKVELSFNQIVKI 179
>gi|29831452|ref|NP_826086.1| transcription antitermination protein [Streptomyces avermitilis
MA-4680]
gi|29608567|dbj|BAC72621.1| putative transcription antitermination protein [Streptomyces
avermitilis MA-4680]
Length = 287
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 280 SFDQIQK 286
>gi|304385479|ref|ZP_07367824.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici DSM 20284]
gi|304328686|gb|EFL95907.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici DSM 20284]
Length = 202
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++ R G++ + + +P E + + G++ ++ F
Sbjct: 26 EKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEF 85
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E++ ++ ++ +
Sbjct: 86 PGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTARHA- 144
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE V + DG F G + +D ++ V + +FGR T EL +Q++KI
Sbjct: 145 -DINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 201
>gi|93007006|ref|YP_581443.1| NusG antitermination factor [Psychrobacter cryohalolentis K5]
gi|92394684|gb|ABE75959.1| transcription antitermination protein nusG [Psychrobacter
cryohalolentis K5]
Length = 176
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIVQ +S EK+ S+ R++RS ++ +P+E VV ++ G+K SER+FFP
Sbjct: 1 MRWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ M D +H +KD P+++GF+G E P+P+T+ E + I+N++ P
Sbjct: 61 GYVLIQMDMNDNTWHIVKDCPRIMGFVGGTPETPAPITEVEADRILNRLNQTETDPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + V DGPF F G+V+ VD EKS++H+ V +F R T VEL +++VEK+
Sbjct: 121 LFEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175
>gi|229824601|ref|ZP_04450670.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271]
gi|229785972|gb|EEP22086.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271]
Length = 179
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ YS E K E+I R + + I +P E VV G + +
Sbjct: 1 MSKEWYVLHTYSGYENKVKENIEMRTESMNMQDHIFRIAVPEEEVVEKTDGVEKKKVEKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ M+D+ + +++TP V GF+G+ G PSP+ EI I+ +A +
Sbjct: 61 FPGYVLVEMEMSDEAWFIVRNTPGVTGFVGSHGAGSKPSPLLPEEIAAILG--DAPMPSQ 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ E G+ V + DG F+ +G ++ +D + ++ V + +FGR T EL + QV+K
Sbjct: 119 RVELNVEEGDYVSIIDGAFSGLSGQIEEIDRDHDKLKVVIEMFGRETVAELDFVQVKK 176
>gi|302559020|ref|ZP_07311362.1| transcription termination/antitermination factor NusG [Streptomyces
griseoflavus Tu4000]
gi|302476638|gb|EFL39731.1| transcription termination/antitermination factor NusG [Streptomyces
griseoflavus Tu4000]
Length = 285
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 98 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 157
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 158 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 217
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 218 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 277
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 278 SFDQIQK 284
>gi|320095594|ref|ZP_08027257.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 178 str. F0338]
gi|319977502|gb|EFW09182.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 178 str. F0338]
Length = 309
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K R
Sbjct: 121 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDSIFSVEVPDEYVMEYRGTAKKRVRRV 180
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRP 117
PGY ++ ++ Y +K+TP V GF+G NP P++ E+ ++ N +E A ++
Sbjct: 181 RIPGYAIVCMDFNEESYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEKK 240
Query: 118 VSS--------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
FEVGE V V DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 241 KDKPAPVQEIRTAFEVGETVTVIDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 300
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 301 FDQVEKL 307
>gi|319942159|ref|ZP_08016476.1| transcription antitermination protein nusG [Sutterella
wadsworthensis 3_1_45B]
gi|319804294|gb|EFW01183.1| transcription antitermination protein nusG [Sutterella
wadsworthensis 3_1_45B]
Length = 179
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY + VYS+ EK ++ R+++SG L E+ +P+E+V VR GRKV SERR +PG
Sbjct: 8 WYTLHVYSSMEKSVKNALEERIAQSGELRSSFGEVLLPTEKVHEVRNGRKVTSERRMYPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV I+ M D +H + TP++I FLG NP P++ +E+ +I++ E + +P + F
Sbjct: 68 YVFIQMEMNDATWHLVNSTPRIIEFLGN-NNPVPLSPTEVANILSAAENSSDKPRPKIEF 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V + G F F G V VD +KSR++V V IFGR T V+L +N+VEKI
Sbjct: 127 EIGEMVRIKSGAFKDFTGRVDGVDYDKSRLNVFVSIFGRDTLVDLGFNEVEKI 179
>gi|310659520|ref|YP_003937241.1| transcription termination factor [Clostridium sticklandii DSM 519]
gi|308826298|emb|CBH22336.1| transcription termination factor [Clostridium sticklandii]
Length = 180
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K +I ++ G++ L+ ++ +P E VV + G++ +R+ FP
Sbjct: 9 AKWYVIHTYSGHENKVKATIEKAVANRGMEDLIQDVAVPVEDVVENKNGKEKIRQRKVFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLIK ++TD+ ++ +++T V GF+G P +T E+E++ + + + V
Sbjct: 69 GYVLIKMIVTDESWYVVRNTKGVTGFVGPNSKPVALTAEEVENMGVEKQKSFD---LVVD 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G+++ VS GPF F G ++ ++ +K V + +FGR TPVEL + QV+K+
Sbjct: 126 FSIGDKIQVSGGPFDGFAGTIEEINHDKKHAKVNISMFGRETPVELEFYQVKKV 179
>gi|255971873|ref|ZP_05422459.1| transcription antitermination protein NusG [Enterococcus faecalis
T1]
gi|255974868|ref|ZP_05425454.1| transcription antitermination protein NusG [Enterococcus faecalis
T2]
gi|256616771|ref|ZP_05473617.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 4200]
gi|256957955|ref|ZP_05562126.1| transcription antitermination protein NusG [Enterococcus faecalis
DS5]
gi|256961025|ref|ZP_05565196.1| transcription antitermination protein NusG [Enterococcus faecalis
Merz96]
gi|256963833|ref|ZP_05568004.1| transcription antitermination protein NusG [Enterococcus faecalis
HIP11704]
gi|257079893|ref|ZP_05574254.1| transcription antitermination protein NusG [Enterococcus faecalis
JH1]
gi|257081708|ref|ZP_05576069.1| transcription antitermination protein NusG [Enterococcus faecalis
E1Sol]
gi|257084305|ref|ZP_05578666.1| transcription antitermination protein NusG [Enterococcus faecalis
Fly1]
gi|257087696|ref|ZP_05582057.1| transcription antitermination protein NusG [Enterococcus faecalis
D6]
gi|257090914|ref|ZP_05585275.1| transcriptional antitermination protein nusG [Enterococcus faecalis
CH188]
gi|257416898|ref|ZP_05593892.1| transcription antitermination protein NusG [Enterococcus faecalis
AR01/DG]
gi|257420120|ref|ZP_05597114.1| transcription antitermination protein nusG [Enterococcus faecalis
T11]
gi|257421659|ref|ZP_05598649.1| transcription antitermination protein nusG [Enterococcus faecalis
X98]
gi|255962891|gb|EET95367.1| transcription antitermination protein NusG [Enterococcus faecalis
T1]
gi|255967740|gb|EET98362.1| transcription antitermination protein NusG [Enterococcus faecalis
T2]
gi|256596298|gb|EEU15474.1| transcription antitermination protein NusG [Enterococcus faecalis
ATCC 4200]
gi|256948451|gb|EEU65083.1| transcription antitermination protein NusG [Enterococcus faecalis
DS5]
gi|256951521|gb|EEU68153.1| transcription antitermination protein NusG [Enterococcus faecalis
Merz96]
gi|256954329|gb|EEU70961.1| transcription antitermination protein NusG [Enterococcus faecalis
HIP11704]
gi|256987923|gb|EEU75225.1| transcription antitermination protein NusG [Enterococcus faecalis
JH1]
gi|256989738|gb|EEU77040.1| transcription antitermination protein NusG [Enterococcus faecalis
E1Sol]
gi|256992335|gb|EEU79637.1| transcription antitermination protein NusG [Enterococcus faecalis
Fly1]
gi|256995726|gb|EEU83028.1| transcription antitermination protein NusG [Enterococcus faecalis
D6]
gi|256999726|gb|EEU86246.1| transcriptional antitermination protein nusG [Enterococcus faecalis
CH188]
gi|257158726|gb|EEU88686.1| transcription antitermination protein NusG [Enterococcus faecalis
ARO1/DG]
gi|257161948|gb|EEU91908.1| transcription antitermination protein nusG [Enterococcus faecalis
T11]
gi|257163483|gb|EEU93443.1| transcription antitermination protein nusG [Enterococcus faecalis
X98]
Length = 171
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
YS E K +I R G+ + + +P E V+ G++ + FPGYVL++
Sbjct: 2 HTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGYVLVE 61
Query: 69 AVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ S + +
Sbjct: 62 MIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQ--SDLEVAL 119
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I
Sbjct: 120 GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 170
>gi|326802933|ref|YP_004320751.1| transcription termination/antitermination factor NusG [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650638|gb|AEA00821.1| transcription termination/antitermination factor NusG [Aerococcus
urinae ACS-120-V-Col10a]
Length = 186
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSERRFF 61
+WY++ YS E K E++ R++ ++ + + +P E + + G++ + + F
Sbjct: 9 KQWYVLHTYSGYENKVKENLESRITSMDMEEYIFRVVVPEEEKLQKNKSGQEKVVKTQTF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYV ++ +M+D+ + +++TP V GFLG+ G P P+ E+ ++ + P
Sbjct: 69 PGYVFVEMIMSDEAWFVVRNTPNVTGFLGSHGQGSKPVPLLPDEVHRLLRS--QGISAPK 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FE GE V V DG F G ++ +DEE ++ + + +FGR T E+ ++QV+K+
Sbjct: 127 RDISFEDGEVVEVIDGAFLGLEGRIEEIDEEHQKLKLTIEMFGRETIAEVDFDQVDKL 184
>gi|312880652|ref|ZP_07740452.1| transcription antitermination protein nusG [Aminomonas paucivorans
DSM 12260]
gi|310783943|gb|EFQ24341.1| transcription antitermination protein nusG [Aminomonas paucivorans
DSM 12260]
Length = 181
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 100/176 (56%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RW+IVQ YS E K ++ R++ G++ V + +P E V V+ G+ R+ F
Sbjct: 6 ERRWFIVQTYSGYENKVKANLDQRIATMGMEERVFRVLVPVEERVYVKDGKTKRMRRKVF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL++ ++ D+ ++ ++ TP V GF+G+G +P P+T+ E+ IM ++ +P +
Sbjct: 66 PSYVLVEMILDDQSWYVVRHTPGVTGFVGSGNHPIPLTEKEVAEIMGKIGKDQAKPKMEI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F++G+ V V GPF G V + +K +V + +FGR T VE + +EKI+
Sbjct: 126 AFKIGDTVRVKAGPFEGQVGPVAEIVPDKGKVKFTITVFGRETLVEADHTDLEKIL 181
>gi|254442748|ref|ZP_05056224.1| transcription termination/antitermination factor NusG
[Verrucomicrobiae bacterium DG1235]
gi|198257056|gb|EDY81364.1| transcription termination/antitermination factor NusG
[Verrucomicrobiae bacterium DG1235]
Length = 191
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q SN E K + + ++ V E+ +P+E V V+ G+K R+F+PGY
Sbjct: 12 WYVIQTLSNQEGKVKRYLDKFIKEDEMEEYVFEVLVPTETVTEVKNGKKTQLVRKFYPGY 71
Query: 65 VLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+ + D+ ++ +++T VI F+G G+ P+P+ SEI+ I++QVEAA +
Sbjct: 72 AFVHMRLYDENGKLLNKPWYFVRETAGVINFVG-GDRPTPLKKSEIDTILSQVEAATGKE 130
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+GE V ++DGPF + NG + +D EK ++ V V IFGR TPVEL Y QVE++
Sbjct: 131 TPKVQFEIGEEVKITDGPFLNLNGRIDEIDPEKGKLKVSVSIFGRFTPVELEYWQVERL 189
>gi|291447027|ref|ZP_06586417.1| transcription antitermination protein nusG [Streptomyces
roseosporus NRRL 15998]
gi|291349974|gb|EFE76878.1| transcription antitermination protein nusG [Streptomyces
roseosporus NRRL 15998]
Length = 294
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|116514973|ref|YP_802602.1| hypothetical protein BCc_024 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256827|gb|ABJ90509.1| transcription antitermination protein [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 180
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++Q +S E + ++SI + + ++ IPSE V+ ++KG++ S+ +FFP
Sbjct: 6 KKWYVLQTFSGFENQVLQSIINNEKIKKMKEIFGKVIIPSEEVIEIKKGKRKKSDYKFFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GY+LI +M + +H IK+ PKV+GF+G + E P+PV + EI I+++++ +P
Sbjct: 66 GYILIHMIMNNYSWHIIKNLPKVLGFIGSSSEQPTPVNNHEINLILDKLKKIGDKPRPKK 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPF+ FNGIV+ +D EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 126 IFEPGENVRVNDGPFSDFNGIVETIDYEKNRLKVSVSIFGRSTPVELDFRQVEK 179
>gi|297201705|ref|ZP_06919102.1| transcription termination/antitermination factor NusG [Streptomyces
sviceus ATCC 29083]
gi|197710922|gb|EDY54956.1| transcription termination/antitermination factor NusG [Streptomyces
sviceus ATCC 29083]
Length = 287
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 280 SFDQIQK 286
>gi|225569799|ref|ZP_03778824.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM
15053]
gi|225161269|gb|EEG73888.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM
15053]
Length = 171
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKATQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + + E V V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIRQENIV------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V G +A G+++ ++ K + + V +FGR TPVE+++ +V+K+
Sbjct: 117 DFEVGDTVQVIAGAWADTVGVIQALNIPKQSLTINVELFGRETPVEISFAEVKKM 171
>gi|302390946|ref|YP_003826766.1| transcription antitermination protein nusG [Acetohalobium
arabaticum DSM 5501]
gi|302203023|gb|ADL11701.1| transcription antitermination protein nusG [Acetohalobium
arabaticum DSM 5501]
Length = 178
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56
M+ + WY + YS E K ++ R+ ++ + +I IPS+ V V+ G K S
Sbjct: 1 MSKKEPEWYAIHTYSGRENKVKSNLEQRIKTIDMEEKIIDILIPSKDEVKVKDEGEKKVS 60
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQ 115
E RFFPGYVLIK +M D+ ++ +++TP VIGF G +G P PV+D E+ I N++ Q
Sbjct: 61 EERFFPGYVLIKMIMDDESWYVVRNTPGVIGFAGASGTKPVPVSDPEVRTIKNEMGLQSQ 120
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG+ V V DGPF F G ++ ++ +KS++ V V +FGR TPVEL ++QVE
Sbjct: 121 ---VDIDLEVGDEVRVVDGPFEDFAGEIQEINLDKSKLTVLVSMFGRQTPVELDFDQVED 177
Query: 176 I 176
I
Sbjct: 178 I 178
>gi|23012400|ref|ZP_00052495.1| COG0250: Transcription antiterminator [Magnetospirillum
magnetotacticum MS-1]
Length = 244
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 108/151 (71%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY++ VYS EKK +SI + + G+ +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3 TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGTKVNAERKFF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E I+ QV+ V+RP S+
Sbjct: 63 PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
FEVGE+V VSDGPF SFNG+V+ VDEEK+R
Sbjct: 123 TFEVGEQVRVSDGPFTSFNGMVEEVDEEKAR 153
>gi|269219033|ref|ZP_06162887.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 848 str. F0332]
gi|269212144|gb|EEZ78484.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 848 str. F0332]
Length = 274
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS EK+ + + R+ ++ + +I +P E V +R+G++ R PG
Sbjct: 88 RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------- 110
YVLI+ +TD + ++ T V GF+G G P ++++E+ ++ V
Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAG 207
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+AA P + + VG+ V ++ P+A V VD R+ V + + G+ TPVEL++
Sbjct: 208 KAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELSF 267
Query: 171 NQVEK 175
NQV K
Sbjct: 268 NQVRK 272
>gi|160934068|ref|ZP_02081455.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753]
gi|156866741|gb|EDO60113.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753]
Length = 173
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K ++ + L L+ E+ +P+E V V+ + ER+ +
Sbjct: 4 EAKWYVVHTYSGYENKVASNLEKTVENRQLQDLIQEVRVPTEMVTEVKDNKTRQVERKIY 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K V+TD+ ++ +++ GF+G P P+TD E+ + V+ V
Sbjct: 64 PSYVLVKMVLTDESWYVVRNIRGCTGFVGPSSKPIPLTDEEVARM------GVEVRQVEV 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+EVG+ V + DGP F G V+ ++ EK+ V V V +FGR TPVEL +QVE
Sbjct: 118 SYEVGDSVRIVDGPLDGFVGTVEEMNTEKNSVRVTVSMFGRETPVELELDQVE 170
>gi|326566153|gb|EGE16309.1| transcription antitermination protein [Moraxella catarrhalis
103P14B1]
gi|326566163|gb|EGE16318.1| transcription antitermination protein [Moraxella catarrhalis
12P80B1]
gi|326577248|gb|EGE27141.1| transcription antitermination protein [Moraxella catarrhalis
101P30B1]
gi|326577813|gb|EGE27681.1| transcription antitermination protein [Moraxella catarrhalis O35E]
Length = 176
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+Q +S E + S+ R+ RS E+ +P+E VV +R+G+K +++ FP
Sbjct: 1 MRWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKYTMQQKLFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI M + +H ++ P + GF+G ENP+P+T E + I+N++ P
Sbjct: 61 GYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+VK VD +KS++H+ V +F R T VEL +N+VEKI
Sbjct: 121 MFEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175
>gi|299143702|ref|ZP_07036782.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518187|gb|EFI41926.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 176
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++ + ++ L+ +I +P E V ++G K ER+ F
Sbjct: 7 EAKWYVIHTYSGHENKVKANMEAMVVNRNMEDLIFDIQVPIEEYVENKEGSKKVKERKLF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K +M D+ ++ +++T V GF+G G P P++D E+ +
Sbjct: 67 PSYVLVKMIMNDESWYLVRNTRGVTGFVGPGSKPVPLSDEEVITLGVC-----DNKEIFG 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V GPF F G + + + EK ++ V V +FGR T VEL +NQV K
Sbjct: 122 EYEVGETVKVISGPFNDFVGKIDSCNYEKKKIKVSVSMFGRDTLVELDFNQVIK 175
>gi|119963130|ref|YP_948675.1| transcription termination/antitermination factor NusG [Arthrobacter
aurescens TC1]
gi|119949989|gb|ABM08900.1| transcription termination/antitermination factor NusG [Arthrobacter
aurescens TC1]
Length = 300
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 118 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 177
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 178 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEQGKPVNK 237
Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV
Sbjct: 238 QNQAPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 297
Query: 174 EKI 176
KI
Sbjct: 298 TKI 300
>gi|302553509|ref|ZP_07305851.1| transcription termination/antitermination factor NusG [Streptomyces
viridochromogenes DSM 40736]
gi|302471127|gb|EFL34220.1| transcription termination/antitermination factor NusG [Streptomyces
viridochromogenes DSM 40736]
Length = 298
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N ++ PGY
Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNIKQNKLPGY 170
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 231 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 290
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 291 SFDQIQK 297
>gi|154503736|ref|ZP_02040796.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149]
gi|153795836|gb|EDN78256.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149]
Length = 172
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ FP
Sbjct: 4 AKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVVELKNGVQKASQKKMFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI +M D ++ +++T V GF+G G P P+ + E+ ++ +++ V
Sbjct: 64 GYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMANL------GIKQEDIVVD 117
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V G + G+++ ++E+K + + V +FGR TPVEL +++V K+
Sbjct: 118 FEVGDTVTVLSGAWEGTVGMIQAINEQKQSLSINVELFGRETPVELNFSEVRKM 171
>gi|297159567|gb|ADI09279.1| transcription antitermination protein nusG [Streptomyces
bingchenggensis BCW-1]
Length = 297
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 110 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRRTVRQNKLPGY 169
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEEAG 229
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 230 LPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 290 SFDQIQK 296
>gi|116671541|ref|YP_832474.1| NusG antitermination factor [Arthrobacter sp. FB24]
gi|116611650|gb|ABK04374.1| NusG antitermination factor [Arthrobacter sp. FB24]
Length = 287
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 106 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 165
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV------ 118
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 166 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVKH 225
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V FEVGE V V +GPF + + + + + V V IF R TPV LA+NQV
Sbjct: 226 AAAPVDVDFEVGESVIVKEGPFETLPATISEIKVDSQTLVVLVSIFERETPVTLAFNQVT 285
Query: 175 KI 176
KI
Sbjct: 286 KI 287
>gi|223982628|ref|ZP_03632862.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM
12042]
gi|223965408|gb|EEF69686.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM
12042]
Length = 182
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V Y+ E + E++ R+ G+ + I + E + + G+KV FP
Sbjct: 6 KEWYVVNTYAGHENRVKENLQRRVDTMGISDYLFRILVAEEPEIEYKNGKKVEKMHNLFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ +MTD+ ++ +++TP V GF+G+ G P PV+ EI+ I+ ++ +
Sbjct: 66 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSPEEIDSILRRIGMS--DRKV 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
SV F G+RV + GPF+ G + ++++ V ++FGR TP E+AYN +EK+
Sbjct: 124 SVNFTTGDRVKILTGPFSGIEGSIDAMNDDTQTATVLCILFGRETPTEIAYNDLEKV 180
>gi|307720234|ref|YP_003891374.1| transcription antitermination protein nusG [Sulfurimonas
autotrophica DSM 16294]
gi|306978327|gb|ADN08362.1| transcription antitermination protein nusG [Sulfurimonas
autotrophica DSM 16294]
Length = 175
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y ++ ++I + GL +T++ +P+E V+ V+ G+K SER
Sbjct: 1 MAHQWYSIQTY-GSDRTVRDAIFNMIEEHGLQDYITDVIVPTEDVIEVKDGKKKVSERSL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV + + ++ H I+ PKV GF+G G P+P+++ +I I+++V P
Sbjct: 60 YSGYVFARIDLNTEIQHMIQSIPKVSGFIGEGNVPTPLSEHDINVILDRVNNRAA-PKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VFF+ GE V + DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 119 VFFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175
>gi|257869763|ref|ZP_05649416.1| transcription antiterminator NusG [Enterococcus gallinarum EG2]
gi|257803927|gb|EEV32749.1| transcription antiterminator NusG [Enterococcus gallinarum EG2]
Length = 180
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K ++ R G+ + + +P E + G+K + F
Sbjct: 5 EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKKKEIVHKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + +
Sbjct: 65 PGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTR--T 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI
Sbjct: 123 VELEVEIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180
>gi|212702089|ref|ZP_03310217.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098]
gi|212674494|gb|EEB34977.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098]
Length = 191
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKG-RKVNSERRFF 61
RWYIV YS E++ ++I + + L+ E+ +P+E+V+ + G + S R+F+
Sbjct: 17 RWYIVHTYSGFEQRVQKTIKAMMDSGEDNGLIQEVVVPTEKVIEPSKNGSQPRTSTRKFY 76
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I+ +MTD H ++ PKV GF+G P+P+++S+ I++ +E+ + P
Sbjct: 77 PGYVMIRMIMTDLSCHLVQSIPKVTGFVGGKNRPTPMSESDAARILSLMESRQETPRPKF 136
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V +GPF FNG+V +V+ EK ++ V V IFGR TPVEL + QV K
Sbjct: 137 NFERGDDVRVIEGPFEGFNGVVDDVNYEKGKLRVSVSIFGRQTPVELDFVQVSK 190
>gi|296112479|ref|YP_003626417.1| transcription termination/antitermination protein NusG [Moraxella
catarrhalis RH4]
gi|295920173|gb|ADG60524.1| transcription termination/antitermination protein NusG [Moraxella
catarrhalis RH4]
gi|326561519|gb|EGE11862.1| transcription antitermination protein [Moraxella catarrhalis 7169]
gi|326564354|gb|EGE14583.1| transcription antitermination protein [Moraxella catarrhalis
46P47B1]
gi|326567989|gb|EGE18081.1| transcription antitermination protein [Moraxella catarrhalis BC7]
gi|326570709|gb|EGE20743.1| transcription antitermination protein [Moraxella catarrhalis BC1]
gi|326571264|gb|EGE21287.1| transcription antitermination protein [Moraxella catarrhalis BC8]
gi|326573054|gb|EGE23027.1| transcription antitermination protein [Moraxella catarrhalis CO72]
Length = 176
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+Q +S E + S+ R+ RS E+ +P+E VV +R+G+K +++ FP
Sbjct: 1 MRWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKCTMQQKLFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI M + +H ++ P + GF+G ENP+P+T E + I+N++ P
Sbjct: 61 GYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V V DGPF F G+VK VD +KS++H+ V +F R T VEL +N+VEKI
Sbjct: 121 MFEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175
>gi|262277083|ref|ZP_06054876.1| transcription termination/antitermination factor NusG [alpha
proteobacterium HIMB114]
gi|262224186|gb|EEY74645.1| transcription termination/antitermination factor NusG [alpha
proteobacterium HIMB114]
Length = 174
Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 120/174 (68%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIVQ +++ EKK E I L ++ L EI +P++ V ++KG++ ++++FP
Sbjct: 1 MKWYIVQAHASAEKKLSEQIKEELEKADLGSKFGEILVPTQDVTEIKKGKRSVVKKKYFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+L+K MT+ VYH IK KV GFLG PSP+++ E+ I+ +E +V P SS+
Sbjct: 61 GYILVKLDMTNDVYHLIKSLKKVSGFLGPQGKPSPISEEEVNKIVGNMEESVANPSSSIT 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VGE+V V DGPFASFNG ++ +DE+KSR+ V V IFGR TPV+L Y+QVEK+
Sbjct: 121 FQVGEQVKVCDGPFASFNGSIEEIDEDKSRLKVSVSIFGRPTPVDLDYSQVEKV 174
>gi|291561991|emb|CBL40802.1| transcription antitermination protein nusG [butyrate-producing
bacterium SS3/4]
Length = 171
Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K I + GL + E+++P E V+ ++ G + ER+ F
Sbjct: 3 EAQWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPLEEVIELKNGAQKQVERKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+++ E+ + + P V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLSEEEM------MSLGFKAPDVVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V+ G + G+++ V+E K + + V +FGR TPVEL++++++K+
Sbjct: 117 DFAVGDTVVVTAGAWKDTVGVIRTVNESKQSITINVEMFGRETPVELSFSEIKKM 171
>gi|153852603|ref|ZP_01994040.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814]
gi|149754245|gb|EDM64176.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814]
Length = 171
Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P E VV ++ G + S+++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVVEMKNGVQKVSQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + +QR +
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPL------GIQREEVVM 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E G+ V V G +A G++++++ +K + + V +FGR TPVE+ + +V+K+
Sbjct: 117 DYEEGDTVQVIAGAWADTVGVIQSINMQKQSLTINVELFGRETPVEIGFAEVKKM 171
>gi|270291194|ref|ZP_06197417.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici 7_4]
gi|270280590|gb|EFA26425.1| transcription termination/antitermination factor NusG [Pediococcus
acidilactici 7_4]
Length = 181
Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K ++ R G++ + + +P E + + G++ ++ F
Sbjct: 5 EKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E++ ++ ++ +
Sbjct: 65 PGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTARHA- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE V + DG F G + +D ++ V + +FGR T EL +Q++KI
Sbjct: 124 -DINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 180
>gi|317133008|ref|YP_004092322.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
gi|315470987|gb|ADU27591.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
Length = 173
Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K ++ + L ++ EI IP+E V ++ K ER+ FP
Sbjct: 5 AKWYVVHTYSGYENKVASNLQTIVENRSLQDVIQEIKIPTEMVTEIKDNVKREVERKTFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL+K + D +H +++T V GF+G+G +P P+T+ E+E + + + V
Sbjct: 65 GYVLVKMELNDDTWHIVRNTRGVTGFVGSGSHPEPLTEKEVEAL------GMDKRTVEVN 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V + DGP F G V +D +K++V V V +FGR TPVEL QVE I
Sbjct: 119 YAVGDSVRIVDGPLDGFIGTVDTLDTDKNQVTVTVSMFGRETPVELELGQVEVI 172
>gi|251772654|gb|EES53218.1| transcription antitermination protein (NusG) [Leptospirillum
ferrodiazotrophum]
Length = 177
Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 102/174 (58%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
W+++ Y+ E K ++ G R G++ + + +P++ V ++G+K S R+ F
Sbjct: 3 EKSWFVLHTYAGFENKVKTALEGLRERGGIEDGIGIVLVPTQNVTEFKEGKKKVSTRKVF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI+ T++V+H +K PKV GFLG P P+T +E+ + +++E P +S
Sbjct: 63 PGYVLIEMEPTEEVFHYVKSVPKVTGFLGNKGKPQPMTATEVNELFHRIEEGTAMPAASE 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ + ++DGPF F G + VD E +V V V IFGR TPVEL + Q+E+
Sbjct: 123 QYFEGDSIRITDGPFQGFTGAISGVDSEHGKVRVLVSIFGRQTPVELDFLQIER 176
>gi|290958181|ref|YP_003489363.1| transcription antitermination protein [Streptomyces scabiei 87.22]
gi|260647707|emb|CBG70812.1| transcription antitermination protein [Streptomyces scabiei 87.22]
Length = 294
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY
Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|172039966|ref|YP_001799680.1| transcription antitermination protein NusG [Corynebacterium
urealyticum DSM 7109]
gi|171851270|emb|CAQ04246.1| transcription antitermination protein [Corynebacterium urealyticum
DSM 7109]
Length = 294
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 26/198 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E V ++ G++ +R+ PGY
Sbjct: 96 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVTELKDGKRKQVKRKLLPGY 155
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
VL++ + D + ++DTP V F+G P+PV E+ + +Q + A
Sbjct: 156 VLVRIELDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETATAAAEDQGQDA 215
Query: 114 VQRPVS---------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
VS V +EVGE V + GPFAS + +D ++R+ V
Sbjct: 216 ADVDVSATGVAVPPKPASETVEVDYEVGESVTILSGPFASVAATISEIDTVQNRLKAMVS 275
Query: 159 IFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QV K+
Sbjct: 276 IFGRETPVELEFDQVAKL 293
>gi|167758528|ref|ZP_02430655.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704]
gi|167663724|gb|EDS07854.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704]
Length = 171
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGVQKATQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + + E V V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIRQENIV------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ G+ V V G +A G++++++ +K + + V +FGR TPVE+ + +V+K+
Sbjct: 117 DFQEGDTVQVIAGAWADTVGVIQSMNIQKQSLTINVELFGRETPVEIGFAEVKKM 171
>gi|326386500|ref|ZP_08208123.1| transcription antitermination protein nusG [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209161|gb|EGD59955.1| transcription antitermination protein nusG [Novosphingobium
nitrogenifigens DSM 19370]
Length = 178
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ YS E K E+I R GL LV + +P+E V V++G+KV ER+F P
Sbjct: 2 ARWYIIHAYSGFENKVREAIIAEAERKGLSQLVEAVEVPTETVTEVKRGKKVQVERKFMP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SS 120
GYVL K M D +YH +K+T KV GFLGT P P+++ E + E A P S
Sbjct: 62 GYVLAKLTMNDDIYHLVKNTAKVTGFLGTNNKPQPISEKEAQRYFGAREQAASEPSNHIS 121
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +E+G+ V V+ GPFASFNG+V+ +D EK RV V V IFGR TPVEL++ +VE +
Sbjct: 122 VDYEIGDSVKVNAGPFASFNGVVEELDFEKQRVKVSVSIFGRATPVELSFEEVELV 177
>gi|483836|dbj|BAA04281.1| NusG [Streptomyces griseus subsp. griseus NBRC 13350]
Length = 294
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPV++
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVDV 286
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 287 SFDQIQK 293
>gi|269793111|ref|YP_003318015.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100746|gb|ACZ19733.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 181
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIVQ YS E K ++ R++ G++ + + +P E V V++GR R+ FP
Sbjct: 6 RRWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSV 121
YVL++ +M D+ ++ ++ TP V GF+G+G +P P+TD E+ +M ++ A ++P +
Sbjct: 66 SYVLVEMIMDDQSWYVVRHTPGVTGFVGSGNHPIPLTDREVAEVMGKIGLPADRKPKVEL 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVG+ V V GPF G V VD +K RV V +FGR T E + +EK++
Sbjct: 126 DIEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKVL 181
>gi|294056232|ref|YP_003549890.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
45221]
gi|293615565|gb|ADE55720.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
45221]
Length = 192
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 8/180 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+WY V SN E+KA + + ++ V EI +P+E V V+ G+K R+F+P
Sbjct: 10 PQWYAVHTLSNQEQKAKRYLDKFIPVEEMEDYVFEILMPTETVTEVKSGKKKTITRKFYP 69
Query: 63 GYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYV +K + D ++ +++ VI F+G G+ PSP+ +EI+ I+ QVE A
Sbjct: 70 GYVFVKMRLYDDDGNLLQKPWYFVREAQGVINFVG-GDRPSPLKKAEIDRILQQVEDADG 128
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + +E+GE V V+DGPF + G ++ +D EK ++ V V IFGR TPVEL Y QV++
Sbjct: 129 KEKPKIEYELGEMVKVNDGPFMNLVGKIEEIDPEKGKLKVSVSIFGRYTPVELEYWQVQR 188
>gi|284042786|ref|YP_003393126.1| NusG antitermination factor [Conexibacter woesei DSM 14684]
gi|283947007|gb|ADB49751.1| NusG antitermination factor [Conexibacter woesei DSM 14684]
Length = 173
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V YS E K ++ R+ V ++ +P+E V ++ ++V +E+R PG
Sbjct: 3 RWYVVNTYSGHENKVKHNLEHRVVSLNQRRAVRQVVVPTESVTEMKDNQRVVTEKRTMPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+ + + + +K TP V GF+G P P+T +E++ ++++ +RP S F
Sbjct: 63 YVLVNMDLNEDSWALVKGTPGVTGFVGASNEPVPLTQAEVDRLLHR--ETAERPRSRAQF 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GE V V GP + F+G + ++E+ +R+ V V IFGR TPVE+ ++QV+KI
Sbjct: 121 SIGESVKVVSGPLSDFSGEISEINEDGARLKVLVSIFGRETPVEVGFDQVKKI 173
>gi|226322715|ref|ZP_03798233.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758]
gi|225208876|gb|EEG91230.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758]
Length = 171
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDEILEVRVPMQEVVELKNGVQKASQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+TD E+ + +Q+ V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPL------GIQKEDIVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V+ G + G+++ ++ K + + V +FGR TPVE+++ +V+K+
Sbjct: 117 DFEEGDTVTVTGGAWEGTVGMIQTINMAKQSLTINVDLFGRETPVEISFAEVKKM 171
>gi|329907539|ref|ZP_08274680.1| Transcription antitermination protein NusG [Oxalobacteraceae
bacterium IMCC9480]
gi|327546946|gb|EGF31851.1| Transcription antitermination protein NusG [Oxalobacteraceae
bacterium IMCC9480]
Length = 164
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EK ++ R++R+G+D +I +P+E V+ V+ G+K +ERRFFPGYVL++ MTD
Sbjct: 1 MEKSVQRALTERVTRAGMDEKFGQILVPTEEVIEVKNGQKTVTERRFFPGYVLVEMEMTD 60
Query: 74 KVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
+ +H +K+T KV GF+G P+P+ +E++ IM Q++ +++P V +EVGE V +
Sbjct: 61 ETWHLVKNTSKVTGFIGGKSNKPTPIPPNEVDKIMQQMQEGIEKPRPKVLYEVGELVRIK 120
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 121 DGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEK 163
>gi|297170766|gb|ADI21788.1| transcription antiterminator [uncultured gamma proteobacterium
HF0130_22O14]
Length = 177
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QV+SN E K ++ R+ +GL +T++ +P E VV ++ G K +ER+F
Sbjct: 1 MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSQITDVVVPIEEVVELKGGEKKTTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVLI+ M D+ +H +K P V+GF+ GT E P+P+TD+E +I+N+VE + P
Sbjct: 61 FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPF F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK
Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176
>gi|325570755|ref|ZP_08146481.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Enterococcus casseliflavus ATCC 12755]
gi|325156601|gb|EGC68781.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Enterococcus casseliflavus ATCC 12755]
Length = 197
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K ++ R G+ + + +P E + G+ + F
Sbjct: 22 EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTF 81
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + +
Sbjct: 82 PGYVLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTR--T 139
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI
Sbjct: 140 VELEVEIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 197
>gi|71066447|ref|YP_265174.1| transcription antitermination protein nusG [Psychrobacter arcticus
273-4]
gi|71039432|gb|AAZ19740.1| transcription antitermination protein nusG [Psychrobacter arcticus
273-4]
Length = 176
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYIVQ +S EK+ S+ R++RS ++ +P+E VV ++ G+K SER+FFP
Sbjct: 1 MRWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI+ M D +H +KD P+++GF+G E P+P+T+ E + I+N++ P
Sbjct: 61 GYVLIQMEMNDNTWHIVKDCPRIMGFIGGTPETPAPITEVEADRILNRLNQTETDPRPKT 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE + V DGPF F G+V+ VD EKS++H+ V +F R T VEL +++VEK+
Sbjct: 121 LFEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175
>gi|166031509|ref|ZP_02234338.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC
27755]
gi|166028914|gb|EDR47671.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC
27755]
Length = 171
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKSVENRHLEDQILEVRVPLQDVVELKNGVQKVSQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + +Q+ V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPL------GIQQDNIVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V G +A G+++ ++ +K V + V +FGR TPVE+++ +++++
Sbjct: 117 DFEVGDTVQVVAGAWADTVGVIQAMNAQKQSVTINVELFGRETPVEISFAEIKRV 171
>gi|325662632|ref|ZP_08151232.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 4_1_37FAA]
gi|331086382|ref|ZP_08335462.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 9_1_43BFAA]
gi|325471129|gb|EGC74355.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 4_1_37FAA]
gi|330406148|gb|EGG85671.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 9_1_43BFAA]
Length = 171
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + V+ ++ G + +++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVIELKNGAEKAVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I +M D ++ +++T V GF+G G P P+T+ E+ + +Q V
Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMLPL------GIQSESIVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ + V G + G V+ V+ K + + V +FGR TPVEL++ +V+K+
Sbjct: 117 DFEEGDTITVVAGAWEGTVGAVQTVNPAKQSLTINVELFGRETPVELSFTEVKKM 171
>gi|284106472|ref|ZP_06386258.1| transcription antitermination protein NusG [Candidatus Poribacteria
sp. WGA-A3]
gi|283830068|gb|EFC34339.1| transcription antitermination protein NusG [Candidatus Poribacteria
sp. WGA-A3]
Length = 179
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ Y+ E + S+ R ++ GL+ ++ +P+E V+ ++ G++ S+R+F
Sbjct: 1 MAKNWYVIHTYAGYEGRVRTSLVERATQMGLEEEFGQVLVPTEDVIEIKDGKRRASKRKF 60
Query: 61 FPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ + D+ IK+TPKV GF+G P P+ E + ++ Q+E+ V P
Sbjct: 61 FPGYVLVELEDPLRDETVVMIKETPKVTGFVGGEGVKPMPLPKEEADSLLKQIESGVSLP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VFF G+ V + DGPF FNG++ VD+E SR V V I GR TPVEL + Q+E+
Sbjct: 121 RERVFFSKGDNVRIVDGPFMGFNGLIDEVDDEHSRAKVLVSILGRATPVELVFAQIER 178
>gi|291303407|ref|YP_003514685.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728]
gi|290572627|gb|ADD45592.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728]
Length = 269
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E + ++ GR++ ++ + +I +P++ V V+ G++ + + FP Y
Sbjct: 78 WYVVHSYAGFENRVKSNLEGRIASFDMEDYIYQIEVPTQMQVEVKNGKRSRVQAKVFPSY 137
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ------ 115
VL++ +T + Y +++TP V GF+G + PSP+T ++ + A +
Sbjct: 138 VLVRMELTPESYSVVRNTPGVTGFVGATNQTDRPSPLTLEDVLKWLAPAVAPEEPAATGS 197
Query: 116 -----------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+P + F VG+ V V+DG FAS + ++ ++ ++ V V IFGR T
Sbjct: 198 GESSGEGGATAKPEIKLDFAVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRET 257
Query: 165 PVELAYNQVEKI 176
PVEL +NQV I
Sbjct: 258 PVELNFNQVSTI 269
>gi|313888133|ref|ZP_07821807.1| transcription termination/antitermination factor NusG
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845823|gb|EFR33210.1| transcription termination/antitermination factor NusG
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 180
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS EKK ++ + G++ ++ +I IP E V + G ER+ F
Sbjct: 11 ASKWYVIHTYSGYEKKVKANMEAMVHNRGMEDVIFDIRIPMEDYVETKDGVSKAKERKMF 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+ +M D+ ++ +++T V GF+G P P+TD E+ ++ +
Sbjct: 71 PSYVLVNMIMNDETWYLVRNTRGVTGFVGPASKPVPLTDEEV-LLLGVTDNKELFD---- 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E+GE V V +GPF G + + + +K +V V + +FGR T VEL +NQ+ K
Sbjct: 126 NYEIGELVKVINGPFKDLVGKIDDFNYDKGKVKVCISMFGRDTIVELDFNQIIK 179
>gi|169333758|ref|ZP_02860951.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM
17244]
gi|169259607|gb|EDS73573.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM
17244]
Length = 185
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ YS E K E+I + R + ++ E+ +P +V + G + E++ FPGY
Sbjct: 19 WYVAHTYSGYENKVKENIEAAVIRRNMSDIIEEVVVPMHKVEETKNGERKVVEKKVFPGY 78
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K MTD ++ +++T V GF+G P P+T+ E+ ++ +++ + +
Sbjct: 79 VLVKMYMTDDAWYIVRNTRGVTGFVGPASKPVPLTEEELRNL-----GIIEKETITTDLK 133
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ + V GPF S+ G+++ ++ +K+++ V + +FGR TPVEL + QV K
Sbjct: 134 VGDEIEVLSGPFESYTGVIEEINIDKAKLKVNISMFGRETPVELDFTQVSK 184
>gi|67459543|ref|YP_247167.1| transcription antitermination protein NusG [Rickettsia felis
URRWXCal2]
gi|75536052|sp|Q4UKC9|NUSG_RICFE RecName: Full=Transcription antitermination protein nusG
gi|67005076|gb|AAY62002.1| Transcription antitermination protein NusG [Rickettsia felis
URRWXCal2]
Length = 192
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + R+++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRRIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKETKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVIVTDGPFETFTGTVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|257867884|ref|ZP_05647537.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30]
gi|257874213|ref|ZP_05653866.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10]
gi|257876778|ref|ZP_05656431.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20]
gi|257801967|gb|EEV30870.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30]
gi|257808377|gb|EEV37199.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10]
gi|257810944|gb|EEV39764.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20]
Length = 180
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K ++ R G+ + + +P E + G+ + F
Sbjct: 5 EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + +
Sbjct: 65 PGYVLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTR--T 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI
Sbjct: 123 VELEVEIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180
>gi|153813451|ref|ZP_01966119.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174]
gi|149830472|gb|EDM85564.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174]
Length = 171
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV +R G +++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMLPL------GIKNDDIQV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+ V V+ G + G++ + +K V + V +FGR TPVE+++ ++K
Sbjct: 117 DFAEGDMVVVTAGAWKDTAGVITAISTQKQTVTINVELFGRETPVEISFADIKK 170
>gi|116333236|ref|YP_794763.1| transcription antiterminator [Lactobacillus brevis ATCC 367]
gi|116098583|gb|ABJ63732.1| transcription antitermination protein nusG [Lactobacillus brevis
ATCC 367]
Length = 182
Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ Y+ E K + ++ R G+ + + +P E V+ G+ + + F
Sbjct: 6 EKQWYVLHTYAGYENKVMANLESRAESMGMQDNIFRVVVPEEEEHEVKNGKDKVTMGKTF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VM+D+ ++ +++TP V GFLG+ G P+P+ E+E I+ +V + +
Sbjct: 66 PGYVLVEMVMSDQSWYIVRNTPGVTGFLGSHGQGSKPTPLLPDEVERILRRVGISARHA- 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ G+ V + DG F+ G + VD EK ++ V + +FGR T EL ++QV+ IV
Sbjct: 125 -ELDVAPGDSVTIVDGAFSGLVGKITEVDNEKMKLKVNIDMFGRETSTELNFDQVDPIV 182
>gi|294791363|ref|ZP_06756520.1| transcription termination/antitermination factor NusG [Scardovia
inopinata F0304]
gi|294457834|gb|EFG26188.1| transcription termination/antitermination factor NusG [Scardovia
inopinata F0304]
Length = 326
Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R+ GL+ V ++ +P E V + K R PG
Sbjct: 141 KWYVLHTYSGYEKRVKANIESRVQNFGLEDTVFQVEVPMEEVEKHTEKGKKIISRVRIPG 200
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ D I++T V GF+G+ P++ E+ +M +
Sbjct: 201 YVLIRMWPDDDARRIIRETEGVTGFVGSNREAVPLSRQEVVDMMAPMIRSQALKESGDKP 260
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A ++ V FE+GE V V+DGPFA+ G++ + ++ V V IFGR TPVEL ++
Sbjct: 261 KAARQRKIEVSFEMGETVTVTDGPFATMTGVISELQPTTQKLTVLVNIFGRDTPVELGFD 320
Query: 172 QVEKI 176
QVEK+
Sbjct: 321 QVEKL 325
>gi|239929535|ref|ZP_04686488.1| transcription antitermination protein [Streptomyces ghanaensis ATCC
14672]
Length = 266
Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 79 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 138
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 139 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 198
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 199 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 258
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 259 SFDQIQK 265
>gi|281358732|ref|ZP_06245208.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548]
gi|281314759|gb|EFA98796.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548]
Length = 193
Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ S E K + I +L G V E IP+E+V VR+G+K + R+ FPG
Sbjct: 14 QWFVIHTLSGHENKVRDKILRQLQT-GDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPG 72
Query: 64 YVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
Y+ ++ + D + ++ I+ V+GFLG P+ +T+SE+E IM +A
Sbjct: 73 YIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVEDIMRPAQAGAPE 132
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVGE V + DG F +F G ++ +D E+ ++ + V IFGR TPVEL + QVE+
Sbjct: 133 VKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVERT 192
Query: 177 V 177
V
Sbjct: 193 V 193
>gi|153816492|ref|ZP_01969160.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756]
gi|317500772|ref|ZP_07958989.1| transcription antitermination protein nusG [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331089751|ref|ZP_08338645.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 3_1_46FAA]
gi|145846188|gb|EDK23106.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756]
gi|316897865|gb|EFV19919.1| transcription antitermination protein nusG [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330403634|gb|EGG83189.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 3_1_46FAA]
Length = 172
Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P E +R G + +R+ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMEEATELRNGVQKAVQRKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I VM D ++ +++T V GF+G G P P+ + E+E++ +QR V
Sbjct: 63 PGYVMIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEHEMENL------GIQRDNVIV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V G + G V++++E+K + + V +FGR TPVEL++++V+K+
Sbjct: 117 NFGVGDMVVVLSGAWEGTVGTVQSMNEQKKSLSINVELFGRDTPVELSFSEVKKM 171
>gi|152964644|ref|YP_001360428.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216]
gi|151359161|gb|ABS02164.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216]
Length = 320
Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 14/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W+++ Y+ E + ++ R++ ++ + ++ +P E VV V+ G + N R
Sbjct: 131 MPGEWFVIHSYAGYENRVKTNLETRMTSLNMEDYIFQVEVPMEEVVEVKNGTRKNVRRVR 190
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV---------- 110
PGYVL++ +TD+ + ++ TP V GF+G P P+++ EI ++
Sbjct: 191 IPGYVLVRMDLTDESWGAVRHTPGVTGFVGNTHQPVPLSNDEIFSMLAPTLQPTAKAGEK 250
Query: 111 ----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
P V FEVGE V V +GPF + + + ++ ++ V V IFGR TPV
Sbjct: 251 TETGGGTASAPARVVDFEVGESVTVMEGPFETLPATISEISADRQKLTVLVSIFGRETPV 310
Query: 167 ELAYNQVEKI 176
EL +NQV KI
Sbjct: 311 ELNFNQVAKI 320
>gi|46200039|ref|YP_005706.1| transcription factor [Thermus thermophilus HB27]
gi|55980217|ref|YP_143514.1| transcription antitermination protein NusG [Thermus thermophilus
HB8]
gi|548398|sp|P35872|NUSG_THET8 RecName: Full=Transcription antitermination protein nusG
gi|348515|pir||A45281 transcription factor NusG - Thermus aquaticus
gi|46197667|gb|AAS82079.1| transcription factor [Thermus thermophilus HB27]
gi|55771630|dbj|BAD70071.1| transcription antitermination protein NusG [Thermus thermophilus
HB8]
Length = 184
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+G +K ++
Sbjct: 1 MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 60
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 61 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 180
Query: 173 VEK 175
V K
Sbjct: 181 VVK 183
>gi|19551718|ref|NP_599720.1| transcription antitermination protein NusG [Corynebacterium
glutamicum ATCC 13032]
gi|62389373|ref|YP_224775.1| transcription antitermination protein NusG [Corynebacterium
glutamicum ATCC 13032]
gi|7108627|gb|AAF36506.1|AF130462_3 transcriptional antiterminator protein NusG [Corynebacterium
glutamicum]
gi|14041187|emb|CAC38383.1| NusG protein [Corynebacterium glutamicum]
gi|21323240|dbj|BAB97868.1| Transcription antiterminator [Corynebacterium glutamicum ATCC
13032]
gi|41324707|emb|CAF19189.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Corynebacterium
glutamicum ATCC 13032]
Length = 318
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY
Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ M D+V+ ++DTP V F+G N +PV ++ + E AV
Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAA 243
Query: 115 ------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
++P +V F VGE V + G FAS + + ++D E ++ V V IFGR
Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303
Query: 163 VTPVELAYNQVEKI 176
TPV+L+++QVEK+
Sbjct: 304 ETPVDLSFDQVEKV 317
>gi|302543380|ref|ZP_07295722.1| transcription antitermination protein NusG [Streptomyces
hygroscopicus ATCC 53653]
gi|302460998|gb|EFL24091.1| transcription antitermination protein NusG [Streptomyces
himastatinicus ATCC 53653]
Length = 276
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 89 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 148
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 149 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKATAEEGG 208
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 209 APAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 268
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 269 SFDQIQK 275
>gi|187932833|ref|YP_001884461.1| transcription antitermination protein NusG [Clostridium botulinum B
str. Eklund 17B]
gi|187720986|gb|ACD22207.1| transcription termination/antitermination factor NusG [Clostridium
botulinum B str. Eklund 17B]
Length = 173
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L+ L+ ++ +P E V+ + G++ S ++ FP
Sbjct: 5 ARWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVIEEKDGKQKVSLKKKFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLIK +MTD+ ++ +++T V GF+G G P P++D E+E + V +
Sbjct: 65 GYVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM------GVLEMPVEID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + +K ++ V +FGR T EL +NQVEK+V
Sbjct: 119 LEVGESIRIISGPLRDSVAKIQEIVLDKKKIKALVDMFGRETLAELDFNQVEKLV 173
>gi|229917372|ref|YP_002886018.1| NusG antitermination factor [Exiguobacterium sp. AT1b]
gi|229468801|gb|ACQ70573.1| NusG antitermination factor [Exiguobacterium sp. AT1b]
Length = 183
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 106/184 (57%), Gaps = 10/184 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE---RVVSVRKGRKVNSE 57
M +W++VQ YS E E++ R+ ++ + + +P+E V+++ G K E
Sbjct: 1 MEKQWFVVQTYSGFENNVKENLERRIGSMNMEDKIFRVLVPTETTQEEVTLKSGEKKIKE 60
Query: 58 R--RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112
R + FPGYV ++ VMTD ++ +++TP V GFLG+ G P P+ E+ ++++Q+
Sbjct: 61 REVKSFPGYVFVEMVMTDDSWYVVRNTPNVTGFLGSTGGGAKPIPLQPDEVTNVLSQMGL 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ +E+G+ V V +G F +F G + ++ +K ++ V V +FGR T +EL + Q
Sbjct: 121 IEKKDR--YNYELGDLVRVKEGAFENFEGTIDEIEADKEKLKVVVDMFGRETKIELDFEQ 178
Query: 173 VEKI 176
V+KI
Sbjct: 179 VQKI 182
>gi|134096333|ref|YP_001101408.1| transcription antitermination protein [Herminiimonas
arsenicoxydans]
Length = 159
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ ++ R++R+G+ +I +P+E V+ V+ G+K SERRFFPGYVL++ MTD+ +H
Sbjct: 1 MRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFPGYVLVEMEMTDETWHL 60
Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+K+T KV GF+G P+P+ E++ IM Q++ V++P V +EVGE V + DGPF
Sbjct: 61 VKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKVLYEVGEMVRIKDGPFT 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 121 DFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 159
>gi|308233405|ref|ZP_07664142.1| transcription termination/antitermination factor NusG [Atopobium
vaginae DSM 15829]
gi|328943541|ref|ZP_08241006.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Atopobium vaginae DSM 15829]
gi|327491510|gb|EGF23284.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Atopobium vaginae DSM 15829]
Length = 181
Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERR 59
M WY++ YS E K + R+ GL+ + +I IP+E VV V+ G++ N E
Sbjct: 1 MAKHWYVIHTYSGYENKVKSDLEHRIETYGLEDQIVDIKIPTEEVVQVKSDGKRKNVETN 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL++ + D + +++T V GF+G P+P+ SE +M + A+ ++
Sbjct: 61 VFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIDGKPAPLRRSEFNKMMRKSNASQEKVTP 120
Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ FEVG V V GP F G + V E ++ V + IFGR TPVEL NQVE I
Sbjct: 121 QSITTDFEVGMAVRVIQGPLEKFEGKITEVMVEAGKLKVSLTIFGRETPVELTMNQVEVI 180
>gi|188589977|ref|YP_001919660.1| transcription antitermination protein NusG [Clostridium botulinum
E3 str. Alaska E43]
gi|251779965|ref|ZP_04822885.1| transcription termination/antitermination factor NusG [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188500258|gb|ACD53394.1| transcription termination/antitermination factor NusG [Clostridium
botulinum E3 str. Alaska E43]
gi|243084280|gb|EES50170.1| transcription termination/antitermination factor NusG [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 173
Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K ++ + L+ L+ ++ +P E VV + G++ S ++ FP
Sbjct: 5 ARWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVVEEKDGKQKVSLKKKFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLIK +MTD+ ++ +++T V GF+G G P P++D E+E + V +
Sbjct: 65 GYVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM------GVLEMPVEID 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
EVGE + + GP ++ + +K ++ V +FGR T EL +NQVEK+V
Sbjct: 119 LEVGESIKIISGPLRDSVAKIQEIILDKKKIKALVDMFGRETLAELDFNQVEKLV 173
>gi|157803322|ref|YP_001491871.1| transcription antitermination protein NusG [Rickettsia canadensis
str. McKiel]
gi|157784585|gb|ABV73086.1| transcription antitermination protein NusG [Rickettsia canadensis
str. McKiel]
Length = 192
Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ P V GFLG+ P +T+ EI++I N +EA + +S
Sbjct: 78 SYLLIKMNMTDKSWHFVKNIPGVTGFLGSKTMPKALTEGEIQNIFNNLEAEAKEAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL ++QV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVSIFGKATPIELNFSQVKK 190
>gi|81429286|ref|YP_396287.1| transcription antitermination protein NusG [Lactobacillus sakei
subsp. sakei 23K]
gi|78610929|emb|CAI55981.1| Transcription antitermination protein NusG [Lactobacillus sakei
subsp. sakei 23K]
Length = 182
Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 60/180 (33%), Positives = 104/180 (57%), Gaps = 5/180 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY++ YS E K ++ R G+++ V + +P E ++ G+ ++
Sbjct: 5 LEKSWYVLHTYSGYENKVKANLESRAQSMGMENNVFRVVVPEEEEHEIKNGKDKVDMKKT 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VM+D+ + +++TP V GF+G+ G P+P+ D EI I+ Q+ + +
Sbjct: 65 FPGYVLVEMVMSDEAWFVVRNTPGVTGFVGSHGAGSKPAPLLDDEISQILRQLGMSTRH- 123
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F+VGE V + DG F+ G + VD+EK ++ V + +FGR T EL Y+QV+++V
Sbjct: 124 -LDVEFKVGESVKIVDGAFSGLVGQITEVDDEKMKLKVNIDMFGRETATELDYDQVDELV 182
>gi|242309997|ref|ZP_04809152.1| transcription antitermination protein nusG [Helicobacter pullorum
MIT 98-5489]
gi|239523294|gb|EEQ63160.1| transcription antitermination protein nusG [Helicobacter pullorum
MIT 98-5489]
Length = 176
Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER
Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVKEHHLEERLTDIVVPTEDIIEVKNNKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV I+ + ++HTI+ PKV F+G + P+P+++++I HI+ +V+ P
Sbjct: 61 YPGYVFIRVDLDTALWHTIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V + +GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 IIFEAGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|133872295|gb|ABO40215.1| transcription antitermination component [Candidatus Liberibacter
americanus]
Length = 177
Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 126/177 (71%), Positives = 148/177 (83%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M RW+I+QVYSNCEK AV+SI R +R+GL + + EI +PSE+VV VRKGRKV+SERRF
Sbjct: 1 MVSRWFIIQVYSNCEKSAVKSICERSNRTGLRNFLEEIIVPSEKVVVVRKGRKVDSERRF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGYVL KAVM D+VYH IK PKVIGFLG+ NPSPV+D EI IM QVEA+ PVSS
Sbjct: 61 FPGYVLAKAVMNDEVYHAIKSAPKVIGFLGSDNNPSPVSDEEINRIMGQVEASEYGPVSS 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE+GE+V VSDGPFASFNGIVK+VDE+KSR+ VEV+IFGR TPVEL+YNQVEKIV
Sbjct: 121 IMFEIGEQVYVSDGPFASFNGIVKDVDEDKSRLKVEVLIFGRATPVELSYNQVEKIV 177
>gi|193214885|ref|YP_001996084.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110]
gi|193088362|gb|ACF13637.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110]
Length = 203
Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 106/173 (61%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V+ YS E+K E + ++ +G+ + ++ IP ER V V+ G+K + + FPG
Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVLI+AV+ + + + D P VIGFLG G+ P+P+ E++ ++ + ++ V+ F
Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLGVGDEPTPLRPDEVKRLLEPEQEIERKMVTKAPF 148
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG V + DGPF S G+++ V+ EK +V V + FGR TP E+ ++QV+ +
Sbjct: 149 EVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVKLV 201
>gi|52840562|ref|YP_094361.1| transcription antitermination protein NusG [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52627673|gb|AAU26414.1| transcription antitermination protein NusG [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 184
Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF
Sbjct: 9 AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H ++ P+V+GF+ GT + P+P++D E + IM +VE V +P
Sbjct: 69 PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 128
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 183
>gi|330814211|ref|YP_004358450.1| transcription antitermination protein NusG [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487306|gb|AEA81711.1| transcription antitermination protein NusG [Candidatus Pelagibacter
sp. IMCC9063]
Length = 175
Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 86/174 (49%), Positives = 121/174 (69%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIVQ YS EKK E I L ++ L ++ +P++ V ++KG+K ++++FP
Sbjct: 2 MKWYIVQSYSGFEKKVSEQIQEELDKADLSDHFDQVLVPTQDVTEIKKGKKTIVKKKYFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL K +MTD++YH IKD KV GFLG PSP+ + E++ I+ +E ++ P SSV
Sbjct: 62 GYVLAKMIMTDQIYHLIKDLKKVSGFLGPQGKPSPIHEDEVQKILGNMEESISNPTSSVI 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +GE+V VSDGPFASFNG+V+ +DE+KSR+ V V IFGR TPV+L Y QVEK+
Sbjct: 122 FTIGEQVKVSDGPFASFNGLVEEIDEDKSRLKVSVSIFGRPTPVDLDYAQVEKL 175
>gi|307609126|emb|CBW98571.1| transcription antitermination protein NusG [Legionella pneumophila
130b]
Length = 182
Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF
Sbjct: 7 AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H ++ P+V+GF+ GT + P+P++D E + IM +VE V +P
Sbjct: 67 PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181
>gi|260905750|ref|ZP_05914072.1| transcription termination/antitermination factor [Brevibacterium
linens BL2]
Length = 302
Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +++ R L+ + E +P E VV ++ G++ R PGY
Sbjct: 114 WYVIHSYAGYENRVKQNLENRAISLNLEEFIFESQVPMEDVVEIKNGQRKQVRRVRIPGY 173
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------------- 110
VL++ +TD+ + ++ TP V GF+G +P+P++ E+ ++ +
Sbjct: 174 VLVRMELTDESWGAVRHTPGVTGFVGNAYDPTPLSIDEVFTMLAPIFEERQAEAAAAEGV 233
Query: 111 ---EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+AA P++ V +EVGE V V +G F ++ + E ++ V + IF R PVE
Sbjct: 234 QAEQAAKSAPITEVEYEVGESVLVKEGSFEGHPATIQEIRPESQKLTVLLSIFERDVPVE 293
Query: 168 LAYNQVEKI 176
L+++QV K+
Sbjct: 294 LSFDQVSKL 302
>gi|297192720|ref|ZP_06910118.1| transcription antitermination protein nusG [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721624|gb|EDY65532.1| transcription antitermination protein nusG [Streptomyces
pristinaespiralis ATCC 25486]
Length = 298
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 170
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 231 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 290
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 291 SFDQIQK 297
>gi|237753301|ref|ZP_04583781.1| transcription antitermination protein nusG [Helicobacter
winghamensis ATCC BAA-430]
gi|229375568|gb|EEO25659.1| transcription antitermination protein nusG [Helicobacter
winghamensis ATCC BAA-430]
Length = 176
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER
Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV +K + ++HTI+ PKV F+G + P+P+++++I HI+ +V+ P
Sbjct: 61 YPGYVFVKVDLDTALWHTIQSLPKVSRFIGESKKPTPLSEADINHIIEKVQNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ FE GE V + +GPFA+F GIV+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 IIFEAGEVVRIIEGPFANFTGIVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|225573375|ref|ZP_03782130.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM
10507]
gi|225039288|gb|EEG49534.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM
10507]
Length = 172
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 99/174 (56%), Gaps = 6/174 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P E VV +R G + + +++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPMEDVVEMRNGTQKSVQKKLF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +Q P V
Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMRPL------GIQEPSIVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ V V+ G + GI+++++ +K + V +FGR TPVE+++ +++K
Sbjct: 117 DFEEGDEVVVTGGAWKDTVGIIQSLNIQKQVATINVELFGRETPVEISFLEIKK 170
>gi|145294627|ref|YP_001137448.1| transcription antitermination protein NusG [Corynebacterium
glutamicum R]
gi|140844547|dbj|BAF53546.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 318
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY
Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ M D+V+ ++DTP V F+G N +PV ++ + E AV
Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAD 243
Query: 115 ------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
++P +V F VGE V + G FAS + + ++D E ++ V V IFGR
Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303
Query: 163 VTPVELAYNQVEKI 176
TPV+L+++QVEK+
Sbjct: 304 ETPVDLSFDQVEKV 317
>gi|206890987|ref|YP_002249161.1| transcription termination/antitermination factor NusG
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742925|gb|ACI21982.1| transcription termination/antitermination factor NusG
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 174
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V S E+K SI R+ GL+ ++ I IP+E+++ V+ +K E++F
Sbjct: 1 MAKQWYVVHTMSGFEEKVKASIEERVKTKGLEDKISRILIPTEKIIEVKGKKKKEQEKKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY+L++ + D +H I T +V GF+G G+ P+P+ E+E I+ Q+E + P
Sbjct: 61 YPGYILVEMELNDDTWHLISTTQRVTGFVG-GKKPAPIPQEEVEMILQQLEKG-RAPQIK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V ++DGPF +F G + VD E RV V V IFGR TPVELA++QVEK+
Sbjct: 119 AHFEKGETVRITDGPFTNFTGYIDEVDSEHERVKVMVSIFGRQTPVELAFSQVEKV 174
>gi|270160341|ref|ZP_06188994.1| transcription termination/antitermination factor NusG [Legionella
longbeachae D-4968]
gi|289163818|ref|YP_003453956.1| transcription antitermination protein NusG [Legionella longbeachae
NSW150]
gi|269987153|gb|EEZ93411.1| transcription termination/antitermination factor NusG [Legionella
longbeachae D-4968]
gi|288856991|emb|CBJ10805.1| transcription antitermination protein NusG [Legionella longbeachae
NSW150]
Length = 181
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E + I R L+ + E+ +PSE VV +R G+K S R+FF
Sbjct: 6 SKQWYVVHAYSGYENFVMREIISRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H I+ P+V+GF+ GT + P+P+TD E IM +VE V +P
Sbjct: 66 PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V +GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 126 ILFEPGEVVRVKEGPFVDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 180
>gi|311896608|dbj|BAJ29016.1| putative transcription antitermination protein [Kitasatospora setae
KM-6054]
Length = 315
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +++ R ++ + E +P E VV ++ G + + PGY
Sbjct: 132 WYVIHTYAGYENRVKQNLEQRSVSLNVEDYIFESQVPQEEVVQIKNGDRKTIRQNKLPGY 191
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112
VL++ +T + + +++TP V GF+G +P P+T E+ ++ +
Sbjct: 192 VLVRMDLTPESWGVVRNTPGVTGFVGNAYDPYPLTLDEVVKMLAPDVERAAAKEAGKASP 251
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL+++Q
Sbjct: 252 VRPVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQ 311
Query: 173 VEK 175
++K
Sbjct: 312 IQK 314
>gi|257460973|ref|ZP_05626073.1| transcription termination/antitermination factor NusG
[Campylobacter gracilis RM3268]
gi|257441636|gb|EEV16779.1| transcription termination/antitermination factor NusG
[Campylobacter gracilis RM3268]
Length = 176
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I L+ + E+ +P+E V+ V+ ++ ER
Sbjct: 1 MANKWYAIQTYAGSEMAVKRAIEALKQDEALEAKIGEVLVPTEDVIEVKNTKQTIKERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGY + ++H I+ PKV F+G + PS + + +IE I+ ++ + P
Sbjct: 61 YPGYCFANLDLDTTLWHRIQMLPKVSRFIGEAKKPSALPEKDIEIILEKINNR-EAPKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ F+ GE V + DGPFA+FNGIV+ D ++ + V IFGR TP+E++Y+QVEKI+
Sbjct: 120 INFDEGETVRIIDGPFANFNGIVEEYDMIHGKLRLNVSIFGRSTPIEISYSQVEKII 176
>gi|54296353|ref|YP_122722.1| transcription antitermination protein NusG [Legionella pneumophila
str. Paris]
gi|148361065|ref|YP_001252272.1| transcription antitermination protein NusG [Legionella pneumophila
str. Corby]
gi|296105866|ref|YP_003617566.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99
Alcoy]
gi|53750138|emb|CAH11530.1| transcription antitermination protein NusG [Legionella pneumophila
str. Paris]
gi|148282838|gb|ABQ56926.1| transcription antitermination protein NusG [Legionella pneumophila
str. Corby]
gi|295647767|gb|ADG23614.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99
Alcoy]
Length = 182
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E + I R L+ + E+ +PSE VV +R G+K S R+FF
Sbjct: 7 AKQWYVVHAYSGYENFVMREITSRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H ++ P+V+GF+ GT + P+P++D E + IM +VE V +P
Sbjct: 67 PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181
>gi|56707309|ref|YP_169205.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110669779|ref|YP_666336.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis FSC198]
gi|134301348|ref|YP_001121316.1| transcription termination factor NusG [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187931078|ref|YP_001891062.1| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. mediasiatica FSC147]
gi|56603801|emb|CAG44772.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320112|emb|CAL08155.1| transcription antitermination protein nusG [Francisella tularensis
subsp. tularensis FSC198]
gi|134049125|gb|ABO46196.1| transcription termination factor NusG [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187711987|gb|ACD30284.1| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. mediasiatica FSC147]
gi|282158434|gb|ADA77825.1| transcription termination factor NusG [Francisella tularensis
subsp. tularensis NE061598]
Length = 177
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I++ VE + P
Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKS 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|297170819|gb|ADI21839.1| transcription antiterminator [uncultured gamma proteobacterium
HF0130_25M15]
Length = 177
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QV+SN E K ++ R+ +GL +T++ +P E VV ++ G K +ER+F
Sbjct: 1 MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSEITDVVVPIEEVVELKGGEKKTTERKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVLI+ M D+ +H +K P V+GF+ GT E P+P+TD+E +I+N+VE + P
Sbjct: 61 FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GE V V DGPF F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK
Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176
>gi|54293309|ref|YP_125724.1| transcription antitermination protein NusG [Legionella pneumophila
str. Lens]
gi|53753141|emb|CAH14588.1| transcription antitermination protein NusG [Legionella pneumophila
str. Lens]
Length = 182
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF
Sbjct: 7 AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H ++ P+V+GF+ GT + P+P++D E + IM +VE V +P
Sbjct: 67 PGYVLVHMVMDDQTWHMVRAIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181
>gi|291546353|emb|CBL19461.1| transcription antitermination protein nusG [Ruminococcus sp. SR1/5]
Length = 173
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV ++ G +++ F
Sbjct: 4 AAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQDVVEMKNGTSRQVQKKMF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +Q+P V
Sbjct: 64 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------MPLGIQKPDIEV 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+ V V+ G + G++ ++ +K V + V +FGR TPVE+++ +++K
Sbjct: 118 DFAEGDMVVVTGGAWKDTAGVITGINMQKQTVTINVELFGRETPVEISFTEIKK 171
>gi|328884386|emb|CCA57625.1| Transcription antitermination protein NusG [Streptomyces venezuelae
ATCC 10712]
Length = 299
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N ++ PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKGGERKNVKQNKLPGY 171
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ A + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 232 KPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 292 SFDQIQK 298
>gi|89257018|ref|YP_514380.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica LVS]
gi|115315379|ref|YP_764102.1| transcription antitermination protein NusG [Francisella tularensis
subsp. holarctica OSU18]
gi|118498141|ref|YP_899191.1| transcription antitermination protein nusG [Francisella tularensis
subsp. novicida U112]
gi|167009399|ref|ZP_02274330.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica FSC200]
gi|169656748|ref|YP_001429284.2| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|89144849|emb|CAJ80188.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica LVS]
gi|115130278|gb|ABI83465.1| transcription antitermination protein NusG [Francisella tularensis
subsp. holarctica OSU18]
gi|118424047|gb|ABK90437.1| transcription antitermination protein nusG [Francisella novicida
U112]
gi|164551816|gb|ABU62328.2| transcription termination/antitermination factor NusG [Francisella
tularensis subsp. holarctica FTNF002-00]
Length = 177
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I+ VE + P
Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSKSTVEPRLRKS 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|226198300|ref|ZP_03793871.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei Pakistan 9]
gi|225929820|gb|EEH25836.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei Pakistan 9]
Length = 164
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPGYVL++ MTD
Sbjct: 1 MEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTD 60
Query: 74 KVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P FEVGE V V
Sbjct: 61 ETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVK 120
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 121 EGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 164
>gi|210613431|ref|ZP_03289714.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787]
gi|210151174|gb|EEA82182.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787]
Length = 176
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P VV ++ G + ++++ F
Sbjct: 8 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMLEVVEMKNGTQKAAQKKMF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I +M D ++ +++T V GF+G G P P+T++EI+ + + V
Sbjct: 68 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEIDAL------GIMDADIVV 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVGE V V+ G + G+++ V+ +K + + V +FGR TPVE+++ +V+K+
Sbjct: 122 DFEVGEVVKVTKGAWKDTIGVIQEVNAQKQSLVINVELFGRETPVEISFAEVKKM 176
>gi|331091902|ref|ZP_08340734.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 2_1_46FAA]
gi|330402801|gb|EGG82368.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 2_1_46FAA]
Length = 171
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKAVSKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I +M D ++ +++T V GF+G G P P+TD E+ + +Q+ V
Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPL------GIQKEEIVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V+ G + G+++ ++ +K + + V +FGR TPVE+++ +V+K+
Sbjct: 117 DFEEGDTVTVTAGAWEGTVGVIQAMNAQKQSLTINVELFGRETPVEISFKEVKKM 171
>gi|295107783|emb|CBL21736.1| transcription antitermination protein nusG [Ruminococcus obeum
A2-162]
Length = 171
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + VV +R G +++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + + E V
Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMLPLGIKAED------IQV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+ V V+ G + G++ ++ +K V + V +FGR TPVE+++ +++K
Sbjct: 117 DFAEGDMVVVTGGAWKDTAGVITAINTQKQTVTINVELFGRETPVEISFAEIKK 170
>gi|289705066|ref|ZP_06501477.1| transcription termination/antitermination factor NusG [Micrococcus
luteus SK58]
gi|289558229|gb|EFD51509.1| transcription termination/antitermination factor NusG [Micrococcus
luteus SK58]
Length = 294
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 22/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ EK+ ++ R+ ++ + EI +P E VV ++ + R PGY
Sbjct: 100 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVRIPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIM---------------- 107
VL++ + D + ++ TP V GF+G +P P++ E+ ++
Sbjct: 160 VLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYDMLAPSVIQEAARAAEKAG 219
Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ A P V FEVGE V V+DGPF + + + E ++ V V IF R
Sbjct: 220 LAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFER 279
Query: 163 VTPVELAYNQVEKIV 177
TPV L++NQV K +
Sbjct: 280 ETPVTLSFNQVTKAI 294
>gi|224418583|ref|ZP_03656589.1| transcription antitermination protein NusG [Helicobacter canadensis
MIT 98-5491]
gi|253826866|ref|ZP_04869751.1| transcription antitermination protein NusG [Helicobacter canadensis
MIT 98-5491]
gi|313142111|ref|ZP_07804304.1| transcription antitermination protein nusg [Helicobacter canadensis
MIT 98-5491]
gi|253510272|gb|EES88931.1| transcription antitermination protein NusG [Helicobacter canadensis
MIT 98-5491]
gi|313131142|gb|EFR48759.1| transcription antitermination protein nusg [Helicobacter canadensis
MIT 98-5491]
Length = 176
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER
Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV IK + ++H I+ PKV F+G + P+P+++++I HI+ +V+ P
Sbjct: 61 YPGYVFIKVDLDTALWHKIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V FE GE V + +GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 VIFETGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176
>gi|300022529|ref|YP_003755140.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
gi|299524350|gb|ADJ22819.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
Length = 191
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 95/173 (54%), Positives = 124/173 (71%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV Y+N E+K ++I R GLD L EI +P+E VV V++GRK+ +ER+F PG
Sbjct: 17 RWYIVHAYTNFERKVADAIRERAKAGGLDDLFEEIVVPTEEVVEVKRGRKIPTERKFLPG 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K MTD+ + IK+TPKV GFLG P P+ + E I+NQV+ V+RP ++ F
Sbjct: 77 YVLVKMKMTDQAFVMIKNTPKVTGFLGADNKPMPIPEDEALRILNQVKEGVERPRPTITF 136
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+GE V V+DGPFASF G+V++VDEE+SRV V V IFGR TPVEL + QVEKI
Sbjct: 137 EIGENVKVADGPFASFTGVVEDVDEERSRVKVAVSIFGRPTPVELEFGQVEKI 189
>gi|218508075|ref|ZP_03505953.1| transcription antitermination protein NusG [Rhizobium etli Brasil
5]
Length = 157
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 94/157 (59%), Positives = 123/157 (78%)
Query: 20 ESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTI 79
E I + + GL+HL +I +P+E+VV VR+GRKV+SER+FFPGYVL++A +TD+ YH I
Sbjct: 1 EDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKFFPGYVLVRANLTDEAYHLI 60
Query: 80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139
K+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S+ FE+GE+V VSDGPFASF
Sbjct: 61 KNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKASITFEIGEQVRVSDGPFASF 120
Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
NG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 NGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 157
>gi|152973943|ref|YP_001373460.1| transcription antitermination protein NusG [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022695|gb|ABS20465.1| NusG antitermination factor [Bacillus cytotoxicus NVH 391-98]
Length = 177
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177
>gi|228989305|ref|ZP_04149296.1| Transcription antitermination protein nusG [Bacillus pseudomycoides
DSM 12442]
gi|229083416|ref|ZP_04215764.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-44]
gi|228699849|gb|EEL52486.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-44]
gi|228770383|gb|EEM18956.1| Transcription antitermination protein nusG [Bacillus pseudomycoides
DSM 12442]
Length = 177
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177
>gi|291458135|ref|ZP_06597525.1| transcription termination/antitermination factor NusG [Oribacterium
sp. oral taxon 078 str. F0262]
gi|291419218|gb|EFE92937.1| transcription termination/antitermination factor NusG [Oribacterium
sp. oral taxon 078 str. F0262]
Length = 176
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+ YS E K + + GL L+ E+++P + V+ ++ G + ++++ F
Sbjct: 7 EARWYVAHTYSGYENKVKMDLEKTIENRGLQDLILEVSVPMQPVIEMKNGVEKKTDKKMF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D+ ++ +++T V GF+G G P P+++ EI + + V
Sbjct: 67 PGYVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEIRIL------GYRESEILV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G+ V V+ G + G++ ++E+K V + V +FGR TPVEL+Y +++K+
Sbjct: 121 DFALGDTVNVTSGAWKDTIGVITEINEQKRTVTINVEMFGRDTPVELSYGEIQKL 175
>gi|332184687|gb|AEE26941.1| Transcription antitermination protein NusG [Francisella cf.
novicida 3523]
Length = 177
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A ++ ++ +K P+V+ +G+ P P++ +E+E I+ VE + P
Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVERILGFVEGSKSTVEPRLRKS 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|163839736|ref|YP_001624141.1| transcription termination/antitermination factor [Renibacterium
salmoninarum ATCC 33209]
gi|162953212|gb|ABY22727.1| transcription termination/antitermination factor [Renibacterium
salmoninarum ATCC 33209]
Length = 264
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + EI +P E VV ++ ++ R PGY
Sbjct: 80 WYVIHSYAGYENRVKANLETRAQSLNMEEHIFEIQVPMEEVVEIKNAQRKVVNRVRIPGY 139
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q S
Sbjct: 140 VLVRMELTDASWGVVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEDEQAAESGKGSA 199
Query: 120 --------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+V FE+GE V V +GPF + + + E + V V +F R TPV L+++
Sbjct: 200 TKAAQAPIAVDFEIGESVIVKEGPFETLPATISEIKPESQTLVVLVSLFERETPVTLSFS 259
Query: 172 QVEKI 176
QV KI
Sbjct: 260 QVTKI 264
>gi|162448675|ref|YP_001611042.1| transcription antitermination protein NusG [Sorangium cellulosum
'So ce 56']
gi|161159257|emb|CAN90562.1| transcription antitermination protein NusG [Sorangium cellulosum
'So ce 56']
Length = 176
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++ YS E K +++ R+ + L+ EI IPSE V R G K ++
Sbjct: 1 MAKKWYVIHTYSGYEAKVRDALQQRVKQYSLEDRFGEILIPSETVTENRPGGKTRVRQKL 60
Query: 61 -FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGY+ ++ M ++V+H +KDTPKV GF+G + P V +I+++ + +P
Sbjct: 61 SLPGYIFVEMEMNEQVWHLVKDTPKVTGFIGN-QTPQEVPIVQIDNLRRGIVEGAVKPKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FEVGE V V DG FA+F G V +V +K ++ V+V IFGR T VEL ++ VEK
Sbjct: 120 RLTFEVGEEVRVLDGAFANFTGTVDDVKMDKQKLKVKVSIFGRPTSVELDFSAVEK 175
>gi|291521805|emb|CBK80098.1| transcription antitermination protein nusG [Coprococcus catus GD/7]
Length = 187
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P WY+V YS E K +I + L+ + ++ +P + V+ V+ G+K +++ FP
Sbjct: 11 PMWYVVHTYSGYENKVKTNIDKSIQNLHLEDQILDVQVPVQEVIEVKDGKKKTVQKKLFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI---MNQVEAAVQRPVS 119
GYVL+ +M D+ ++ +++T V GF+G P P+T+ E+ + MN E +
Sbjct: 71 GYVLLHMIMNDETWYVVRNTRGVTGFVGPESKPVPLTEEEMAAMGINMNDAEKDEPDQMI 130
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V E G+ V + G + GIV++V+ V V + +FGR T VE+++ + K+
Sbjct: 131 LVDIEEGDMVNIVSGAWQDKEGIVQSVNSANGTVTVGLDMFGRETAVEISFLDIRKM 187
>gi|295396488|ref|ZP_06806649.1| transcription termination/antitermination factor NusG
[Brevibacterium mcbrellneri ATCC 49030]
gi|294970680|gb|EFG46594.1| transcription termination/antitermination factor NusG
[Brevibacterium mcbrellneri ATCC 49030]
Length = 270
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + E+ +P E VV V+ ++ R PGY
Sbjct: 81 WYVIHSYAGYENRVKANLENRTVSLDMEDYIFEVQVPMEDVVEVKNAQRKTVRRVRIPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
VL++ +TD+ + ++ TP V GF+G +P P+T E+ ++
Sbjct: 141 VLVRMELTDESWGVVRHTPGVTGFVGNAYDPIPLTMDEVVSMLAPVIEEHEAARAAEEGE 200
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ A V FEVGE V V +G F ++ + E+ ++ V + IF R PV
Sbjct: 201 ARKAAEAASGSEIVVEFEVGETVMVKEGSFEGHPATIQEIRPEQQKLTVLLSIFERDVPV 260
Query: 167 ELAYNQVEKI 176
EL + QV KI
Sbjct: 261 ELGFGQVSKI 270
>gi|305433028|ref|ZP_07402184.1| transcription termination/antitermination factor NusG
[Campylobacter coli JV20]
gi|304443729|gb|EFM36386.1| transcription termination/antitermination factor NusG
[Campylobacter coli JV20]
Length = 184
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 10 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 70 SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 129 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 184
>gi|42524388|ref|NP_969768.1| transcription antitermination protein [Bdellovibrio bacteriovorus
HD100]
gi|39576597|emb|CAE80761.1| transcription antitermination protein [Bdellovibrio bacteriovorus
HD100]
Length = 177
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYIV V ++CE A ++I ++ S ++ EI IP+E VV + KG+K R+F
Sbjct: 1 MEKKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGY+ ++ + D+ +H ++++ KV GF+G + P V ++E+ + Q+ ++P
Sbjct: 61 FPGYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRP 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F VGE V V DGPF++F G V+ ++E+K+++ V V IFGR TPVEL Y QVEK
Sbjct: 121 KVKFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176
>gi|260437417|ref|ZP_05791233.1| transcription termination/antitermination factor NusG [Butyrivibrio
crossotus DSM 2876]
gi|292810049|gb|EFF69254.1| transcription termination/antitermination factor NusG [Butyrivibrio
crossotus DSM 2876]
Length = 175
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L+ + E+++P + V ++ G K +++ FPGY
Sbjct: 10 WYVVHTYSGYENKVKANIEKTIENRHLEDQILEVSVPLQDAVEIKNGVKKQVQKKIFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI ++ D ++ +++T V GF+G G P P+TD E+ ++ + + +
Sbjct: 70 VLIHMILNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMNNL------GISIGKVAAEYS 123
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V G + + G +K++++ K V + V +FGR TPVEL + ++ I
Sbjct: 124 LGDTVMAISGVWENTVGEIKSINDNKQTVTITVDMFGRETPVELGFTEIRHI 175
>gi|282882465|ref|ZP_06291086.1| transcription termination/antitermination factor NusG
[Peptoniphilus lacrimalis 315-B]
gi|300814586|ref|ZP_07094837.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297607|gb|EFA90082.1| transcription termination/antitermination factor NusG
[Peptoniphilus lacrimalis 315-B]
gi|300511205|gb|EFK38454.1| transcription termination/antitermination factor NusG
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 179
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 5/174 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K +++ ++ ++ L+ +I +P E V + G ER+ F
Sbjct: 10 AAKWYVIHTYSGYENKVKDTMEAMVANRKMEDLILDIRVPMENYVETKDGLSKAKERKMF 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K +M D+ ++ +++T V GF+G P P+++ E+ +
Sbjct: 70 PSYVLVKMIMNDETWYLVRNTRGVTGFVGPASKPVPLSEEEVLLL-----GVTDNKELFG 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+E+GE V V GPF GI+ + + EK +V V + +FGR T VEL +NQ+ K
Sbjct: 125 NYEIGETVRVISGPFNELVGIIDSFNYEKGKVKVSISMFGRDTLVELDFNQIIK 178
>gi|239918213|ref|YP_002957771.1| transcription termination/antitermination factor NusG [Micrococcus
luteus NCTC 2665]
gi|281415596|ref|ZP_06247338.1| transcription termination/antitermination factor NusG [Micrococcus
luteus NCTC 2665]
gi|239839420|gb|ACS31217.1| transcription termination/antitermination factor NusG [Micrococcus
luteus NCTC 2665]
Length = 275
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 22/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ EK+ ++ R+ ++ + EI +P E VV ++ + R PGY
Sbjct: 81 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVRIPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIM---------------- 107
VL++ + D + ++ TP V GF+G +P P++ E+ ++
Sbjct: 141 VLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYEMLAPSVIQEAARSAEKAG 200
Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ A P V FEVGE V V+DGPF + + + E ++ V V IF R
Sbjct: 201 LAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFER 260
Query: 163 VTPVELAYNQVEKIV 177
TPV L++NQV K +
Sbjct: 261 ETPVTLSFNQVTKAI 275
>gi|317052115|ref|YP_004113231.1| transcription termination/antitermination factor NusG
[Desulfurispirillum indicum S5]
gi|316947199|gb|ADU66675.1| transcription termination/antitermination factor NusG
[Desulfurispirillum indicum S5]
Length = 172
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 4/176 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K E++ R+S GL +T+I IP+E V + G+K R+
Sbjct: 1 MALSWYVIHAYSGYENKVQEALEERVSSLGLQDKITQILIPTENVAEYKGGKKKIVTRKR 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV ++ M +H +K+ PKV GF+G G P + DSE++ + +E+ +
Sbjct: 61 YPGYVYVQMEMDKTTWHVVKNIPKVTGFIG-GNKPVAIHDSEVQKL---IESDKRLVEPK 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F + V V +GPF FNG+V +VD E+ RV V V IFGR TPVE Y Q++KI
Sbjct: 117 VEFVERDPVEVVEGPFHGFNGVVTHVDHERKRVKVNVSIFGRETPVEFEYTQIQKI 172
>gi|295837048|ref|ZP_06823981.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB74]
gi|197698951|gb|EDY45884.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB74]
Length = 284
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 97 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 156
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 157 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 216
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 217 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 276
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 277 SFDQIQK 283
>gi|183601875|ref|ZP_02963244.1| probable transcription antitermination protein [Bifidobacterium
animalis subsp. lactis HN019]
gi|219682789|ref|YP_002469172.1| transcription termination/antitermination factor NusG
[Bifidobacterium animalis subsp. lactis AD011]
gi|241190365|ref|YP_002967759.1| transcription antiterminator [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195771|ref|YP_002969326.1| transcription antiterminator [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183218760|gb|EDT89402.1| probable transcription antitermination protein [Bifidobacterium
animalis subsp. lactis HN019]
gi|219620439|gb|ACL28596.1| transcription termination/antitermination factor NusG
[Bifidobacterium animalis subsp. lactis AD011]
gi|240248757|gb|ACS45697.1| Transcription antiterminator [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250325|gb|ACS47264.1| Transcription antiterminator [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178088|gb|ADC85334.1| NusG [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793352|gb|ADG32887.1| Transcription antiterminator [Bifidobacterium animalis subsp.
lactis V9]
Length = 330
Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R+ GL+ + ++ +P E V + K R PG
Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 203
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G P+P++ E+ +M +
Sbjct: 204 YVLIRMYPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASHALKEAGDKP 263
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V ++VG++V V+DGPF S + +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 264 AAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGFD 323
Query: 172 QVEKI 176
QV+++
Sbjct: 324 QVQRL 328
>gi|291518242|emb|CBK73463.1| transcription antitermination protein nusG [Butyrivibrio
fibrisolvens 16/4]
Length = 176
Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + ++ +P V + G K ++ +
Sbjct: 3 EAKWYVVHTYSGYENKVKTNIEKAIETQKLEEQILDVRVPMVEVTETKDGVKKQVSKKMY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI+ +M D+ ++ +++T V GF+G G P P++++E++ + + ++ V
Sbjct: 63 PGYVLIEMIMNDETWYVVRNTRGVTGFVGPGSKPVPLSEAEVKAYL--LGDNTEKVNVEV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ + V DG + G+VK+++ +K V + V +FGR TPVE+ + V K+
Sbjct: 121 DFEVGDTLSVIDGTWKDTVGVVKSINAKKQTVTISVEMFGRETPVEIDFTDVRKM 175
>gi|21223029|ref|NP_628808.1| transcription antitermination protein [Streptomyces coelicolor
A3(2)]
gi|256785873|ref|ZP_05524304.1| transcription antitermination protein [Streptomyces lividans TK24]
gi|19858845|sp|P36266|NUSG_STRCO RecName: Full=Transcription antitermination protein nusG
gi|7248341|emb|CAB77421.1| transcription antitermination protein [Streptomyces coelicolor
A3(2)]
Length = 300
Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 293 SFDQIQK 299
>gi|325261295|ref|ZP_08128033.1| transcription termination/antitermination factor NusG [Clostridium
sp. D5]
gi|324032749|gb|EGB94026.1| transcription termination/antitermination factor NusG [Clostridium
sp. D5]
Length = 172
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P + V+ ++ G + S+++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMQEVIELKNGVQKASQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I +M D ++ +++T V GF+G G P P+ + E+ + + E + V
Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMNRLGIRQENVI------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V G + G++++++E+K + + V +FGR TPVEL + +V K+
Sbjct: 117 EFAVGDAVTVLSGAWEGTVGVIQSLNEQKQSLSINVELFGRETPVELGFAEVRKM 171
>gi|300812659|ref|ZP_07093071.1| transcription termination/antitermination factor NusG
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496389|gb|EFK31499.1| transcription termination/antitermination factor NusG
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 194
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E + +G+K + FP
Sbjct: 17 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 76
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ Q++
Sbjct: 77 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAIL-QMQEGEATEKV 135
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V ++ G F G + + ++K ++ + + +FG T EL ++QV+K+
Sbjct: 136 DYDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHATTAELGFDQVKKM 192
>gi|104774463|ref|YP_619443.1| transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116514567|ref|YP_813473.1| transcription antiterminator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103423544|emb|CAI98456.1| Transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093882|gb|ABJ59035.1| transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 184
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E + +G+K + FP
Sbjct: 7 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ Q++
Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAIL-QMQEGEATEKV 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V +++G F G + + ++K ++ + + +FG T EL ++QV+K+
Sbjct: 126 DYDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182
>gi|154500409|ref|ZP_02038447.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC
29799]
gi|150270914|gb|EDM98197.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC
29799]
Length = 174
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E SI + + L+ E++IP E V + ER+ F
Sbjct: 4 SAKWYVVHTYSGYENTVAASIEKAVENRNMHDLIQEVSIPLETVTEITDNGPKTVERKVF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K VMTD+ +H +++ GF+G+G P++D EI + V++ +
Sbjct: 64 PGYVLVKMVMTDETWHLVRNVRGATGFVGSGNKAIPLSDEEIAAL------GVEKREVVI 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V ++DG S+ G V +D E +V + V +FGR TPVEL +QVE +
Sbjct: 118 GYAVGDNVRITDGALKSYLGTVDEIDMEHEKVRIVVSMFGRETPVELDLDQVEPV 172
>gi|259500947|ref|ZP_05743849.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
iners DSM 13335]
gi|302190601|ref|ZP_07266855.1| transcription antiterminator [Lactobacillus iners AB-1]
gi|309803749|ref|ZP_07697835.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 11V1-d]
gi|309804673|ref|ZP_07698738.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 09V1-c]
gi|309806514|ref|ZP_07700518.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 03V1-b]
gi|309808458|ref|ZP_07702357.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 01V1-a]
gi|309809223|ref|ZP_07703093.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 2503V10-D]
gi|312871558|ref|ZP_07731651.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 3008A-a]
gi|312872528|ref|ZP_07732596.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2062A-h1]
gi|312873886|ref|ZP_07733924.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2052A-d]
gi|312874827|ref|ZP_07734846.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2053A-b]
gi|315653972|ref|ZP_07906888.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lactobacillus iners ATCC 55195]
gi|325912459|ref|ZP_08174854.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 143-D]
gi|325913127|ref|ZP_08175497.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 60-B]
gi|329920454|ref|ZP_08277186.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 1401G]
gi|259167641|gb|EEW52136.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
iners DSM 13335]
gi|308164158|gb|EFO66419.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 11V1-d]
gi|308166065|gb|EFO68283.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 09V1-c]
gi|308167113|gb|EFO69288.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 03V1-b]
gi|308168286|gb|EFO70405.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LactinV 01V1-a]
gi|308170457|gb|EFO72480.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 2503V10-D]
gi|311089572|gb|EFQ47997.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2053A-b]
gi|311090562|gb|EFQ48968.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2052A-d]
gi|311091890|gb|EFQ50266.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 2062A-h1]
gi|311092953|gb|EFQ51304.1| transcription termination/antitermination factor NusG
[Lactobacillus iners LEAF 3008A-a]
gi|315488668|gb|EFU78314.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lactobacillus iners ATCC 55195]
gi|325475801|gb|EGC78972.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 143-D]
gi|325477548|gb|EGC80690.1| transcription termination/antitermination factor NusG
[Lactobacillus iners UPII 60-B]
gi|328936130|gb|EGG32583.1| transcription termination/antitermination factor NusG
[Lactobacillus iners SPIN 1401G]
Length = 183
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E+K + + R G+ + + +P + V +G++ + + FP
Sbjct: 7 KQWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKVDEKVFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ D EI+ I+ + +
Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRIL--ADQNKEAAPQ 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S FEVGE V +++GPF + G + ++ +K ++ V + +FGR T EL + QV+K
Sbjct: 125 SYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKK 180
>gi|257438468|ref|ZP_05614223.1| transcription termination/antitermination factor NusG
[Faecalibacterium prausnitzii A2-165]
gi|257199047|gb|EEU97331.1| transcription termination/antitermination factor NusG
[Faecalibacterium prausnitzii A2-165]
Length = 176
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K + + L L+ +I +P+E V ++ G++ E + FPGY
Sbjct: 10 WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K VM D ++ +++T GF+G P P++ E+E + + +V F
Sbjct: 70 VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM-----GVEKAAPLTVDFN 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174
>gi|971288|dbj|BAA06985.1| nusG [Streptomyces coelicolor A3(2)]
Length = 300
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 293 SFDQIQK 299
>gi|308235430|ref|ZP_07666167.1| transcription antiterminator [Gardnerella vaginalis ATCC 14018]
gi|311114211|ref|YP_003985432.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis ATCC 14019]
gi|310945705|gb|ADP38409.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis ATCC 14019]
Length = 284
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R+ GL+ + +I +P E V K R PG
Sbjct: 99 KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTDKGKKVITRVRVPG 158
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G + P+P++ E+ +M +
Sbjct: 159 YVLIRMWPDENARRIVRETEGVTGFVGPSKEPAPLSRKEVIDMMAPMIASEALKKAGDKP 218
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V ++VG++V V+DGPFA+ +V +VD ++ V V IFGR TPVEL +N
Sbjct: 219 AAARKRTVEVAYKVGDQVTVTDGPFATMAAVVSDVDPTTQKLTVLVSIFGRETPVELGFN 278
Query: 172 QVEKIV 177
QVE IV
Sbjct: 279 QVEPIV 284
>gi|254495698|ref|ZP_05108615.1| transcription antitermination protein NusG [Legionella drancourtii
LLAP12]
gi|254355077|gb|EET13695.1| transcription antitermination protein NusG [Legionella drancourtii
LLAP12]
Length = 181
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF
Sbjct: 6 SKQWYVVHAYSGYENFVMREITSRAVHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ VM D+ +H I+ P+V+GF+ GT + P+P+TD E IM +VE V +P
Sbjct: 66 PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 126 VLFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 180
>gi|184200230|ref|YP_001854437.1| transcription antitermination protein NusG [Kocuria rhizophila
DC2201]
gi|183580460|dbj|BAG28931.1| transcription antitermination protein NusG [Kocuria rhizophila
DC2201]
Length = 294
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E + ++ R+ ++ + +I +P E VV ++ ++ R PGY
Sbjct: 103 WFVIHTYAGYENRVKTNLETRIQSLNMEEDIFQIEVPMEEVVEIKNSQRKTVRRVRIPGY 162
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPV----- 118
VL++ +TD + ++ TP V GF+G NP+P+ E+ ++ ++
Sbjct: 163 VLVRMNLTDASWGAVRHTPGVTGFVGQDAYNPAPLRLDEVFDMLAPTFETPEKAKGLGET 222
Query: 119 --------------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+V FEVGE V V +GPF + + + E ++ V V IF R T
Sbjct: 223 AGPGAGSQGGAAQQVTVDFEVGESVIVKEGPFETLPATISEIKVESQQLVVLVSIFERET 282
Query: 165 PVELAYNQVEKI 176
PV L +NQV KI
Sbjct: 283 PVTLGFNQVTKI 294
>gi|57504724|ref|ZP_00370778.1| transcription termination/antitermination factor NusG
[Campylobacter coli RM2228]
gi|57019380|gb|EAL56078.1| transcription termination/antitermination factor NusG
[Campylobacter coli RM2228]
Length = 177
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|325126276|gb|ADY85606.1| Transcriptional antiterminator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 184
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E + +G++ + FP
Sbjct: 7 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKREEVNEKVFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ Q++
Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAIL-QMQEGEATEKV 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V +++G F G + + ++K ++ + + +FG T EL ++QV+K+
Sbjct: 126 DYDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182
>gi|302521301|ref|ZP_07273643.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB78]
gi|302430196|gb|EFL02012.1| transcription termination/antitermination factor NusG [Streptomyces
sp. SPB78]
Length = 272
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 85 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 144
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 145 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 204
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 205 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 264
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 265 SFDQIQK 271
>gi|293400421|ref|ZP_06644567.1| transcription termination/antitermination factor NusG
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306821|gb|EFE48064.1| transcription termination/antitermination factor NusG
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 183
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E + E++ R+ GL + I + E+ + + G++V + F
Sbjct: 7 KQWYVVNTYAGHENRVKENLERRVETMGLQDFLFRIVVAEEKEIEYKNGKEVEKTKNPFS 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ +MTD+ ++ +++TP V GF+G+ G P PV + E+E I+ ++ + ++
Sbjct: 67 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEDEMEAILRRLGMSERK--V 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VG+RV + G FA+ G V+ + E+ V +++FGR TP E++Y +EK+
Sbjct: 125 QIDFAVGDRVRILSGAFANSEGTVEELHEDSQTAIVLLILFGRETPTEISYGDLEKV 181
>gi|260588883|ref|ZP_05854796.1| transcription termination/antitermination factor NusG [Blautia
hansenii DSM 20583]
gi|331083427|ref|ZP_08332539.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 6_1_63FAA]
gi|260540662|gb|EEX21231.1| transcription termination/antitermination factor NusG [Blautia
hansenii DSM 20583]
gi|330404120|gb|EGG83668.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 6_1_63FAA]
Length = 173
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K +I + L+ + E+ +P + VV ++ G K +++ F
Sbjct: 3 EANWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGEKKQVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T+ EIE + V+ +
Sbjct: 63 PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEGEIEALGISFTGDVE-----I 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V V+ G + G+V++++E K V + V +FGR TPV+L++ +V+ +
Sbjct: 118 DFTEGDSVVVTGGVWKDTVGVVQSINEAKQIVTINVELFGRETPVDLSFAEVKSL 172
>gi|189465406|ref|ZP_03014191.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM
17393]
gi|189437680|gb|EDV06665.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM
17393]
Length = 180
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDATEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 SIPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|330721677|gb|EGG99685.1| Transcription antitermination protein NusG [gamma proteobacterium
IMCC2047]
Length = 159
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ ++ R+ ++ E+ +P+E VV +R G+K SER+F+PGYVL+ M D +H
Sbjct: 1 MRALLERIKLHDMEDKFGEVLVPTEEVVEMRGGQKRKSERKFYPGYVLVNMEMDDASWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+ TP+V+GF+G T + P+P+T+ E + I+ +VE V++P FE GE V V DGPFA
Sbjct: 61 VNSTPRVMGFIGGTADKPAPITEREADAILQRVEQGVEQPRPKTLFEPGEMVRVIDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+G+V+ V+ K+R+ V V IFGR TPVEL ++QVEK
Sbjct: 121 DFSGVVEEVNYPKNRLQVAVTIFGRSTPVELGFDQVEK 158
>gi|309389945|gb|ADO77825.1| transcription antitermination protein nusG [Halanaerobium
praevalens DSM 2228]
Length = 189
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 62/171 (36%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS+ E+K ++ R++ +G++ + I +P+E+ + +KG+ ++R FPGY
Sbjct: 20 WYVVHTYSSHERKVKANLEKRIASTGMEDSIFRILVPTEKKIEKKKGKDEVVKKRIFPGY 79
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+L++ M DK ++ +K+TP VIGF+ G P PV E++ I++ + + SV FE
Sbjct: 80 ILLQMKMNDKSWYVVKNTPGVIGFVSGGTKPLPVAKEEVDAILSSM--GEKAKKVSVDFE 137
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+G++V V GPF F+G++K + E+ + + V +FGR TPVEL ++Q EK
Sbjct: 138 IGDQVTVKHGPFEDFDGVIKEIHPEQGKAKILVSMFGRETPVELEFDQFEK 188
>gi|483834|dbj|BAA04282.1| NusG [Streptomyces coelicolor A3(2)]
Length = 300
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P + VV ++ G + + PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQKEVVQIKNGDRKTIRQNKLPGY 172
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 173 VLVRMDYTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 293 SFDQIQK 299
>gi|329938257|ref|ZP_08287708.1| putative transcription antitermination factor NusG [Streptomyces
griseoaurantiacus M045]
gi|329302746|gb|EGG46636.1| putative transcription antitermination factor NusG [Streptomyces
griseoaurantiacus M045]
Length = 303
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + + PGY
Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 175
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P++ EI ++
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 235
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 296 SFDQIQK 302
>gi|289769765|ref|ZP_06529143.1| transcription antitermination protein nusG [Streptomyces lividans
TK24]
gi|289699964|gb|EFD67393.1| transcription antitermination protein nusG [Streptomyces lividans
TK24]
Length = 295
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY
Sbjct: 108 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 167
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 168 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 227
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 228 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 287
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 288 SFDQIQK 294
>gi|319900912|ref|YP_004160640.1| transcription antitermination protein nusG [Bacteroides helcogenes
P 36-108]
gi|319415943|gb|ADV43054.1| transcription antitermination protein nusG [Bacteroides helcogenes
P 36-108]
Length = 180
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQESGEDL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NIPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|197303970|ref|ZP_03169002.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC
29176]
gi|197296938|gb|EDY31506.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC
29176]
Length = 172
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P E V +R G + +R+ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEEVTELRNGVEKAVQRKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I +M D ++ +++T V GF+G G P P+ +SE+E++ + + +
Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENL------GINKEDVIM 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V G + G V+ ++E+K + + V +FGR TPVEL +++V+K+
Sbjct: 117 DLAVGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171
>gi|160892863|ref|ZP_02073652.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50]
gi|156865422|gb|EDO58853.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50]
Length = 174
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V YS E K I + L + E+++P E + V+ G + R+ F
Sbjct: 6 SAKWYVVHTYSGYENKVKADIEKTIENRKLQDQILEVSVPVEESIEVKNGVQKAVTRKLF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ +M D ++ +++T V GF+G G P P++D E++++ + + +
Sbjct: 66 PGYVLLNMIMNDATWYVVRNTRGVTGFVGPGSKPVPLSDDEMKYL------GINKETIVI 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V+ G + G +K ++ K + ++V IFGR T VE+A+ ++K+
Sbjct: 120 DAEVGDMVEVTAGAWEGTVGSIKAINPSKQTITIDVEIFGRATSVEIAFADIKKL 174
>gi|300087458|ref|YP_003757980.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527191|gb|ADJ25659.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 178
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E++ +++ R+ L+ ++ + +P+E V V+ G++ R+ P
Sbjct: 7 KKWYVVHTYSGHEERVRKNLNERIETLSLEDEISRVEVPTEEEVEVKNGQRRTVRRKILP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV+++ VM D+ ++ ++ TP V GF+G P+P+ +E++ I+ Q+EA + P V
Sbjct: 67 GYVIVQMVMNDQNWNIVRHTPGVTGFVGIEGKPTPLQQNEVDRIITQMEA--EAPRIKVG 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++G+ V V DGPF F G+V V +K +V V + +FGR TPVEL + QVEK+
Sbjct: 125 FKIGQSVRVVDGPFVDFIGMVDEVHADKGKVKVLLSLFGRETPVELDFLQVEKL 178
>gi|227825215|ref|ZP_03990047.1| NusG antitermination factor [Acidaminococcus sp. D21]
gi|226905714|gb|EEH91632.1| NusG antitermination factor [Acidaminococcus sp. D21]
Length = 185
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 96/180 (53%), Gaps = 6/180 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ YS E K ++ ++ G++ ++ ++ +P + + + ++ R+ FP
Sbjct: 5 RHWYVIHTYSGYENKVKLNLESKVHSLGMEDMIFQVLVPMQDELETKDDQQKVVSRKVFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117
GYVLI+ ++ D+ ++ +++TP V GF+GTG P P++ E+ I+ + +
Sbjct: 65 GYVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSPREVARILGKQSTGKKEASVEAP 124
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+ + V + F G V + +E+ +V V + +FGRVTPVE+ ++QVE I
Sbjct: 125 IRMKCPVELDQTVRIKAPGFNDMVGTVAEISDEQQKVKVMIEMFGRVTPVEVNFSQVEAI 184
>gi|283798907|ref|ZP_06348060.1| transcription termination/antitermination factor NusG [Clostridium
sp. M62/1]
gi|291073370|gb|EFE10734.1| transcription termination/antitermination factor NusG [Clostridium
sp. M62/1]
gi|295092664|emb|CBK78771.1| transcription antitermination protein nusG [Clostridium cf.
saccharolyticum K10]
Length = 171
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + GL + E+++P + VV ++ G + ++ F
Sbjct: 3 EANWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPMQDVVEIKNGAQKQVAKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T+ E+ ++ + V
Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMANL------GFKPAGVVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E+G+ V V G + G++K+++E K + + V +FGR TPVEL + +V+K+
Sbjct: 117 DYEIGDAVVVISGAWKDTVGVIKSINENKQTLEITVEMFGRETPVELNFTEVKKM 171
>gi|24216124|ref|NP_713605.1| transcription antiterminator [Leptospira interrogans serovar Lai
str. 56601]
gi|45656642|ref|YP_000728.1| transcription antitermination protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|24197367|gb|AAN50623.1| transcription antiterminator [Leptospira interrogans serovar Lai
str. 56601]
gi|45599878|gb|AAS69365.1| transcription antitermination protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 181
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q YS E K ++I + + L+ + ++ IP+ V ++ G+K ++R+
Sbjct: 3 TKKWYALQTYSGHENKVQKNIEKLIQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVE--AAVQRPV 118
PGYVLI+ M D I+ P V F+G+ P P++ E++++ ++ A+ +
Sbjct: 63 PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F+VG+ + + DGPFA+F G+V + +K R+ V+V IFGR TPVEL Y QV+
Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178
>gi|294101324|ref|YP_003553182.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261]
gi|293616304|gb|ADE56458.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261]
Length = 181
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 98/175 (56%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWYIVQ Y+ E + ++ R++ G++ + + +P E V V+ G+ R+ +
Sbjct: 7 ERRWYIVQTYAGYENRVKANLEQRIATMGMEEEIFSVLVPVEERVFVKDGKSKKVTRKLY 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL++ + D+ ++ ++ TP V GF+G G +P P+++ EI+ IM+++ +P +
Sbjct: 67 PSYVLVEMKLNDQSWYVVRHTPGVTGFVGAGNHPIPLSEKEIKEIMSKIGKDHAKPKIEM 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V GPF G V + EK +V + +FGR T VE Y +++K+
Sbjct: 127 NLKPGDIVKVKSGPFEGQVGPVVEIVPEKGKVKFTITVFGRETVVETDYTELDKL 181
>gi|332169100|gb|AEE18355.1| NusG antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
Length = 184
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V+ S E K I +SR L+ + E+ +P+E+V+ +R G+KVN ER +F
Sbjct: 7 TKQWYVVRAVSGQENKVKAYIEQEISRLNLEDSIEEVLVPTEKVIQIRNGKKVNKERVYF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPV 118
PGY+++KA + ++ H IK VIGFLG G +P P+ SE+ ++ +V+ AV++
Sbjct: 67 PGYIMVKANLGGEIPHIIKSINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVKQDS 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F +GE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 ISIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184
>gi|294630860|ref|ZP_06709420.1| transcription antitermination protein NusG [Streptomyces sp. e14]
gi|292834193|gb|EFF92542.1| transcription antitermination protein NusG [Streptomyces sp. e14]
Length = 288
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + + PGY
Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 160
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P++ EI ++
Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 220
Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 221 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 281 SFDQIQK 287
>gi|15892099|ref|NP_359813.1| transcription antitermination protein NusG [Rickettsia conorii str.
Malish 7]
gi|32129825|sp|Q92J91|NUSG_RICCN RecName: Full=Transcription antitermination protein nusG
gi|15619223|gb|AAL02714.1| transcription antitermination protein NusG [Rickettsia conorii str.
Malish 7]
Length = 192
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 111/173 (64%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + H +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTHFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|167772354|ref|ZP_02444407.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM
17241]
gi|167665457|gb|EDS09587.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM
17241]
Length = 174
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+V YS E K +I + L L E+ +P++ V ++ +K ER+ F
Sbjct: 5 AMRWYVVHTYSGYENKVATNIEKAVENRKLHDLFGEVKVPTQTVTEIKDNKKREVERKIF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K +MTD ++ +++ V GF+G G P P+T+ E++ + V++ V
Sbjct: 65 PGYVLVKMIMTDDSWYVVRNIRGVTGFVGPGSKPVPLTEEEVQRL------GVEQRNIEV 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V VS G F G V +D + + V V V + G+ PVEL +QVE +
Sbjct: 119 NFAVGDSVRVSGGYLEGFIGTVDEIDLQDALVRVTVSMMGKDVPVELELDQVETL 173
>gi|149372370|ref|ZP_01891558.1| transcription anti-termination protein [unidentified eubacterium
SCB49]
gi|149354760|gb|EDM43323.1| transcription anti-termination protein [unidentified eubacterium
SCB49]
Length = 184
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V+ S E K + ++R L + +I +P+E+V+ VR G+KV ER FF
Sbjct: 7 TKKWYVVRSVSGQENKIKSYLESEITRLNLADYIEQILVPTEKVIQVRNGKKVQKERVFF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPV 118
PGY++++A + ++ H IK VIGFLG G +P P+ +E+ ++ +V+ AVQ
Sbjct: 67 PGYIMVQASLAGEIPHIIKSINGVIGFLGETKGGDPVPLRQAEVNRMLGKVDELAVQDDS 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ + +GE V V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 VNIPYTIGETVKVVDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184
>gi|307328012|ref|ZP_07607193.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113]
gi|306886317|gb|EFN17322.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113]
Length = 304
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEESG 236
Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL
Sbjct: 237 MPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296
Query: 169 AYNQVEK 175
+++Q++K
Sbjct: 297 SFDQIQK 303
>gi|291295566|ref|YP_003506964.1| NusG antitermination factor [Meiothermus ruber DSM 1279]
gi|290470525|gb|ADD27944.1| NusG antitermination factor [Meiothermus ruber DSM 1279]
Length = 185
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M+ WY V Y E+K +++ R+ G+ + ++ IP+E VV R+ G+K R+
Sbjct: 1 MSIEWYAVHTYVGHEEKVKQNLEQRVKVLGMQDKIFQVLIPTEEVVEHREGGKKEVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-- 111
+PGY+ + + D + + +++TP V GF+GT +P P+T E++H++
Sbjct: 61 LYPGYIYVLVDLGDTPGEVNEAWEVVRNTPGVTGFVGTATHPVPLTPDEVQHLLEIAGLA 120
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P V F+ G+ V V GPFA F G+V V+ E+ +V V V IFGR TPVEL ++
Sbjct: 121 GKKETPKPQVTFKEGDVVRVVSGPFAEFTGVVSEVNLERQKVKVLVSIFGRETPVELEFS 180
Query: 172 QV 173
QV
Sbjct: 181 QV 182
>gi|229821642|ref|YP_002883168.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333]
gi|229567555|gb|ACQ81406.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333]
Length = 259
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ EK+ ++ R ++ + ++ +P E VV ++ ++ R PGY
Sbjct: 78 WYVVHSYAGYEKRVKANLESRTQSLNMEEYIFQVEVPEEDVVEIKNAQRKVVRRVRIPGY 137
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +TD+ + ++ TP V GF+G P P+T SE+ ++ A
Sbjct: 138 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTTSEVVSMLAPTLEAKAPATKPGAAP 197
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V F VGE V V+DGPF + + + E ++ V V IFGR TPVEL++NQV
Sbjct: 198 AAAPIEVEFTVGESVTVTDGPFDTLPATISEIAPESQKLKVLVSIFGRETPVELSFNQVA 257
Query: 175 KI 176
KI
Sbjct: 258 KI 259
>gi|329962254|ref|ZP_08300260.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328530362|gb|EGF57239.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 180
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQEAGEDL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NIPYVVGETVKVNYGPFTGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|227494532|ref|ZP_03924848.1| transcription termination/antitermination factor [Actinomyces
coleocanis DSM 15436]
gi|226832266|gb|EEH64649.1| transcription termination/antitermination factor [Actinomyces
coleocanis DSM 15436]
Length = 245
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E++ ++ R+ +++ + E +P E V + K K ER PGY
Sbjct: 64 WYVIHTYSGHERRVKANLEQRIQTQNMENFIFEAEVPMETVTELTKSGKKTVERPRIPGY 123
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV------ 118
V+++ +MT+ + +KDTP V+GF+G +NP P++ E+ ++ + A
Sbjct: 124 VIVRTIMTEASWRVVKDTPAVLGFVGDAQNPVPLSIDEVVSLLAPMWEASALKKAAATEI 183
Query: 119 ---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ FE+GE V V DGPF S V +D ++ V ++IF R TP+EL ++QV+K
Sbjct: 184 ITAPAITFEIGESVTVVDGPFESMEATVTEIDAAHRKLTVSILIFERETPIELNFDQVKK 243
Query: 176 I 176
+
Sbjct: 244 L 244
>gi|38233045|ref|NP_938812.1| transcription antitermination protein NusG [Corynebacterium
diphtheriae NCTC 13129]
gi|38199304|emb|CAE48935.1| Putative transcription antitermination protein [Corynebacterium
diphtheriae]
Length = 263
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 18/190 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + ++ +P E+ + +R G++ +R+ PGY
Sbjct: 73 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAIELRDGKRKLVKRKLLPGY 132
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
VL++ + D+ + ++DTP V F+G N +PV ++ + EA
Sbjct: 133 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEATESEAVNAEGEK 192
Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+P ++V FEVGE V + G FAS + + +D E +++ V IFGR TPV
Sbjct: 193 VVAMPTDSTKPKTAVDFEVGEAVTILSGAFASVSATISGIDHENAKIQALVSIFGRETPV 252
Query: 167 ELAYNQVEKI 176
ELA++QVEKI
Sbjct: 253 ELAFDQVEKI 262
>gi|295100380|emb|CBK97925.1| transcription antitermination protein nusG [Faecalibacterium
prausnitzii L2-6]
Length = 176
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K + + L L+ +I +P+E V ++ G++ E + FPGY
Sbjct: 10 WYVVHTYSGYENKVATDLQTMVENRRLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K VM D ++ +++T GF+G P P+T E+E + + +V F
Sbjct: 70 VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM-----GVEKAAPLTVDFN 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174
>gi|213693145|ref|YP_002323731.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|213524606|gb|ACJ53353.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320459325|dbj|BAJ69946.1| putative transcription antiterminator [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 297
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291
Query: 172 QVEKI 176
QV+K+
Sbjct: 292 QVQKL 296
>gi|296120709|ref|YP_003628487.1| transcription termination/antitermination factor NusG [Planctomyces
limnophilus DSM 3776]
gi|296013049|gb|ADG66288.1| transcription termination/antitermination factor NusG [Planctomyces
limnophilus DSM 3776]
Length = 204
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 58/173 (33%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++++ SN EK +++ R+ + GL+ EI IP+E+VV + G+K E + +PGY
Sbjct: 31 WYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLYPGY 90
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVF 122
++++ ++ D ++ ++ T V F G+ P+P+ D EI ++ + E + P +
Sbjct: 91 LMVQMILNDDTWYIVRTTGGVGDFTGSAGKPTPMQDHEIARMLQKQEQKQESAAPAMKIE 150
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VG+ V + +G F F G + ++DE +++V V IFGR TPVEL Y Q E+
Sbjct: 151 FAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203
>gi|296454931|ref|YP_003662075.1| NusG antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
gi|296184363|gb|ADH01245.1| NusG antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
Length = 297
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291
Query: 172 QVEKI 176
QV+K+
Sbjct: 292 QVQKL 296
>gi|154484467|ref|ZP_02026915.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC
27560]
gi|149734315|gb|EDM50232.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC
27560]
Length = 172
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K +I + L + E+++P++ VV ++ G + SE++ F
Sbjct: 3 EANWYVVHTYSGYENKVKTTIEQTIENRKLHDQILEVSVPTQEVVELKNGVRKVSEKKLF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+TD+E+ + ++ V
Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDTEMLSL------GIKNEKVEV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ G+ + V G ++ G+VK +DE + V + V +FGR TPVEL + +V+K+
Sbjct: 117 DFKEGDMIAVIGGVWSGTAGVVKRIDENRQTVTINVDMFGRETPVELNFTEVKKM 171
>gi|187251895|ref|YP_001876377.1| NusG antitermination factor [Elusimicrobium minutum Pei191]
gi|186972055|gb|ACC99040.1| NusG anti-termination factor [Elusimicrobium minutum Pei191]
Length = 178
Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYIV + E K E I ++ + ++ +P+E VV V++ +KV +R+FFP
Sbjct: 5 KAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKRKFFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +T + Y I++ V GFLG NP P+ + EI I++ + +P +
Sbjct: 65 SYVLVEMDLTSEAYWFIRNVSGVTGFLG-DPNPVPLPEEEIAAILDLTQPGSGKPKHVIE 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE V +++GPF F G+V+ V+ +K+++ + V +F R TPVEL + QVEKI
Sbjct: 124 FEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEKI 177
>gi|311063697|ref|YP_003970422.1| transcription antitermination protein NusG [Bifidobacterium bifidum
PRL2010]
gi|310866016|gb|ADP35385.1| NusG Transcription antitermination protein [Bifidobacterium bifidum
PRL2010]
Length = 280
Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ GL+ + +I +P E V K R PG
Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVTSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRIPG 154
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ ++ +
Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274
Query: 172 QVEKI 176
QVEK+
Sbjct: 275 QVEKL 279
>gi|238650690|ref|YP_002916543.1| transcription antitermination protein NusG [Rickettsia peacockii
str. Rustic]
gi|238624788|gb|ACR47494.1| transcription antitermination protein NusG [Rickettsia peacockii
str. Rustic]
Length = 192
Score = 206 bits (526), Expect = 8e-52, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 109/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|240143819|ref|ZP_04742420.1| transcription termination/antitermination factor NusG [Roseburia
intestinalis L1-82]
gi|257204193|gb|EEV02478.1| transcription termination/antitermination factor NusG [Roseburia
intestinalis L1-82]
gi|291534886|emb|CBL07998.1| transcription antitermination protein nusG [Roseburia intestinalis
M50/1]
gi|291539447|emb|CBL12558.1| transcription antitermination protein nusG [Roseburia intestinalis
XB6B4]
Length = 172
Score = 206 bits (526), Expect = 8e-52, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K +I + L+ + E+ +P + VV ++ G K + ++ F
Sbjct: 3 EAHWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGAKKSVSKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+TD E++ + +++ V
Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMKPL------GIKKENIEV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F G+ V V+ G + G+++ ++ K V + V +FGR TPVE+++ V+
Sbjct: 117 DFTEGDTVVVTGGVWKDTIGVIQAMNHGKQSVTINVELFGRETPVEISFADVK 169
>gi|160888411|ref|ZP_02069414.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492]
gi|270294764|ref|ZP_06200965.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D20]
gi|317477763|ref|ZP_07936956.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 4_1_36]
gi|156862088|gb|EDO55519.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492]
gi|270274011|gb|EFA19872.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D20]
gi|316906108|gb|EFV27869.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 4_1_36]
Length = 180
Score = 206 bits (526), Expect = 9e-52, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQESGEDL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 SIPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|330812087|ref|YP_004356549.1| transcription antitermination protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327380195|gb|AEA71545.1| transcription antitermination protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 159
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+KDTP+V+GF+G T + P+P+TD E E I+ +V +P FE GE V V+DGPFA
Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159
>gi|323486268|ref|ZP_08091595.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14163]
gi|323693941|ref|ZP_08108127.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14673]
gi|323400413|gb|EGA92784.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14163]
gi|323501987|gb|EGB17863.1| transcription antitermination protein nusG [Clostridium symbiosum
WAL-14673]
Length = 171
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+++P + V+ ++ G + ++ F
Sbjct: 3 EANWYVVHTYSGYENKVKVDIEKTIENRKLQDQILEVSVPMQDVIELKNGAQKQVAKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T++E++ + + V
Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMDAL------GFREAGLVV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V+ G + G++K+++E K + + V +FGR TPVEL + +V+K+
Sbjct: 117 EFEEGDTVVVTAGAWKDTVGVIKSINEGKQTLTINVEMFGRETPVELNFTEVKKM 171
>gi|226942765|ref|YP_002797838.1| transcription termination/antitermination factor NusG [Azotobacter
vinelandii DJ]
gi|226717692|gb|ACO76863.1| transcription termination/antitermination factor NusG [Azotobacter
vinelandii DJ]
Length = 159
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLIERVKLAGMEDQFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
IKDTP+V+GF+G T + P+P+TD E E I+ +V + RP FE GE V V DGPFA
Sbjct: 61 IKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADSGDRPKPKTLFEPGEVVRVIDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 158
>gi|23465850|ref|NP_696453.1| transcription antitermination protein [Bifidobacterium longum
NCC2705]
gi|317482952|ref|ZP_07941956.1| transcription termination/antitermination factor NusG
[Bifidobacterium sp. 12_1_47BFAA]
gi|322691931|ref|YP_004221501.1| transcription antiterminator [Bifidobacterium longum subsp. longum
JCM 1217]
gi|23326549|gb|AAN25089.1| probable transcription antitermination protein [Bifidobacterium
longum NCC2705]
gi|291516534|emb|CBK70150.1| transcription termination/antitermination factor NusG
[Bifidobacterium longum subsp. longum F8]
gi|316915559|gb|EFV36977.1| transcription termination/antitermination factor NusG
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456787|dbj|BAJ67409.1| putative transcription antiterminator [Bifidobacterium longum
subsp. longum JCM 1217]
Length = 297
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291
Query: 172 QVEKI 176
QV+K+
Sbjct: 292 QVQKL 296
>gi|116327511|ref|YP_797231.1| transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331876|ref|YP_801594.1| transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116120255|gb|ABJ78298.1| Transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125565|gb|ABJ76836.1| Transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 181
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q YS E K ++I + + L+ + ++ IP+ V ++ G+K ++R+
Sbjct: 3 TKKWYALQTYSGHENKVQKNIEKLVQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVE--AAVQRPV 118
PGYVLI+ M D I+ P V F+G+ P P++ E++++ ++ A+ +
Sbjct: 63 PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F+VG+ + + DGPFA+F G+V + +K R+ V+V IFGR TPVEL Y QV+
Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178
>gi|86131812|ref|ZP_01050409.1| transcriptional antitermination factor NusG [Dokdonia donghaensis
MED134]
gi|85817634|gb|EAQ38808.1| transcriptional antitermination factor NusG [Dokdonia donghaensis
MED134]
Length = 184
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V+ S E K I +SR L+ + E+ +P+E+V+ +R G+KVN ER +F
Sbjct: 7 TKQWYVVRAVSGQENKVKAYIEQEISRLSLEDNIEEVLVPTEKVIQIRNGKKVNKERVYF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPV 118
PGY+++KA + ++ H IK VIGFLG G +P P+ +E+ ++ +V+ AV++
Sbjct: 67 PGYIMVKANLAGEIPHIIKSINGVIGFLGEVKGGDPVPLRKAEVNRMLGKVDELAVKQDS 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 VAIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184
>gi|71083815|ref|YP_266535.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1062]
gi|91763149|ref|ZP_01265113.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1002]
gi|71062928|gb|AAZ21931.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717562|gb|EAS84213.1| transcription antitermination protein NusG [Candidatus Pelagibacter
ubique HTCC1002]
Length = 176
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 81/173 (46%), Positives = 119/173 (68%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYIVQ +SN E K I ++ + + EI +P+ V V++G+++ ++++FP
Sbjct: 2 KNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLIK+ M + +YH IK+ +V GFLG+ P PV+D EIE I+ Q++ V +P S +
Sbjct: 62 GYVLIKSEMDNDLYHLIKNLKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIE 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +GE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK
Sbjct: 122 YSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEK 174
>gi|291549807|emb|CBL26069.1| transcription antitermination protein nusG [Ruminococcus torques
L2-14]
Length = 172
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P E V +R G + +R+ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIETRHLEDQILEVRVPLEEVPEIRNGVEKVVQRKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+I +M D ++ +++T V GF+G G P P+ +SE+E++ +++ +
Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENL------GIKQDEVIL 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V V G + G V+ ++E+K + + V +FGR TPVEL +++V+K+
Sbjct: 117 DLEIGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171
>gi|224537804|ref|ZP_03678343.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520624|gb|EEF89729.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus
DSM 14838]
Length = 180
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVREYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDAGEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NIPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|329944007|ref|ZP_08292275.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 170 str. F0386]
gi|328531208|gb|EGF58054.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 170 str. F0386]
Length = 321
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 29/202 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G +K R P
Sbjct: 120 QWYVLHTYSGYERRVATDIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 179
Query: 63 GYVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEI--------EHIMNQ 109
GYV ++ + D KV+ TIKDTP V GF+G NP P+T E E I +
Sbjct: 180 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTPEEIAAK 239
Query: 110 VEAAVQRPVSS---------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
AAV+ V FEVGE V V+DGPF S + + E ++
Sbjct: 240 ETAAVEATAPETGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQ 299
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + +FGR TP EL++ QV KI
Sbjct: 300 VLISLFGRDTPAELSFTQVAKI 321
>gi|295397927|ref|ZP_06807984.1| transcription termination/antitermination factor NusG [Aerococcus
viridans ATCC 11563]
gi|294973812|gb|EFG49582.1| transcription termination/antitermination factor NusG [Aerococcus
viridans ATCC 11563]
Length = 184
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
WY++ Y+ E K +++ R++ ++ + + +P E V + G++ + + F
Sbjct: 9 KEWYVIHTYAGYENKVKQNLEMRITSMDMEDYIYRVIVPEEEHVEKTKSGKENIVKIKNF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +M+D+ + +++TP V GFLG+ G P+P+ E+ +I++ + +
Sbjct: 69 PGYVLVEMIMSDEAWFVVRNTPGVTGFLGSHGQGSKPTPLLPDEVRNILSSLGEGGRNR- 127
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F++ E V V DG F G V+ +D E ++ + V +FGR T E+ Y+QV+K
Sbjct: 128 -DISFDIDEVVKVIDGAFDGMEGRVQEIDAEHGKLKLTVEMFGRETLAEVDYDQVDK 183
>gi|291457099|ref|ZP_06596489.1| transcription termination/antitermination factor NusG
[Bifidobacterium breve DSM 20213]
gi|291380934|gb|EFE88452.1| transcription termination/antitermination factor NusG
[Bifidobacterium breve DSM 20213]
Length = 275
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG
Sbjct: 90 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 149
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 150 YVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKP 209
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 210 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 269
Query: 172 QVEKI 176
QV+K+
Sbjct: 270 QVQKL 274
>gi|218131350|ref|ZP_03460154.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697]
gi|317476377|ref|ZP_07935626.1| transcription termination/antitermination factor NusG [Bacteroides
eggerthii 1_2_48FAA]
gi|329956685|ref|ZP_08297258.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|217986282|gb|EEC52619.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697]
gi|316907403|gb|EFV29108.1| transcription termination/antitermination factor NusG [Bacteroides
eggerthii 1_2_48FAA]
gi|328524057|gb|EGF51133.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 180
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NIPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|239620885|ref|ZP_04663916.1| transcription antitermination protein nusG [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239516146|gb|EEQ56013.1| transcription antitermination protein nusG [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 293
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG
Sbjct: 108 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 167
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 168 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 227
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 228 AAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 287
Query: 172 QVEKI 176
QV+K+
Sbjct: 288 QVQKL 292
>gi|189440484|ref|YP_001955565.1| transcription antiterminator [Bifidobacterium longum DJO10A]
gi|227547016|ref|ZP_03977065.1| transcription antiterminator [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|312133805|ref|YP_004001144.1| nusg [Bifidobacterium longum subsp. longum BBMN68]
gi|322689997|ref|YP_004209731.1| transcription antiterminator [Bifidobacterium longum subsp.
infantis 157F]
gi|189428919|gb|ACD99067.1| Transcription antiterminator [Bifidobacterium longum DJO10A]
gi|227212548|gb|EEI80437.1| transcription antiterminator [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|311773091|gb|ADQ02579.1| NusG [Bifidobacterium longum subsp. longum BBMN68]
gi|320461333|dbj|BAJ71953.1| putative transcription antiterminator [Bifidobacterium longum
subsp. infantis 157F]
Length = 297
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291
Query: 172 QVEKI 176
QV+K+
Sbjct: 292 QVQKL 296
>gi|326773946|ref|ZP_08233228.1| transcription termination/antitermination factor NusG [Actinomyces
viscosus C505]
gi|326636085|gb|EGE36989.1| transcription termination/antitermination factor NusG [Actinomyces
viscosus C505]
Length = 300
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 29/202 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G +K R P
Sbjct: 99 QWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 158
Query: 63 GYVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------- 110
GYV ++ + D KV+ TIKDTP V GF+G NP P+T E +
Sbjct: 159 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTPEEIAAK 218
Query: 111 ----------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
+ A V V FEVGE V V+DGPF S + + E ++
Sbjct: 219 EAAAAEVTAPESGSGTQIAAGGQVFEVAFEVGESVIVTDGPFESLPATIAEILPETQKLQ 278
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + +FGR TP EL++NQV KI
Sbjct: 279 VLISLFGRDTPAELSFNQVAKI 300
>gi|303232391|ref|ZP_07319083.1| transcription termination/antitermination factor NusG [Atopobium
vaginae PB189-T1-4]
gi|302481475|gb|EFL44543.1| transcription termination/antitermination factor NusG [Atopobium
vaginae PB189-T1-4]
Length = 181
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M WY+V Y+ E K + R+ GL+ + +I IP+E VV ++ G++ + E
Sbjct: 1 MAKHWYVVHTYAGYENKVKNDLQHRIETYGLEDQIVDIQIPTEEVVKIKNDGKRTSVEAN 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-- 117
FPGYVL++ + D + +++T V GF+G P+P+ SE +M +
Sbjct: 61 AFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIEGKPTPLRRSEFNKMMRRANPTTPEAPQ 120
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG V V GP F G + V + +V V + IFGR TPVEL +Q+E I
Sbjct: 121 RTVETEFEVGMTVRVVRGPLEKFEGKITEVMTDAGKVKVSLTIFGRETPVELTMDQIEII 180
Query: 177 V 177
V
Sbjct: 181 V 181
>gi|310286801|ref|YP_003938059.1| transcription antitermination factor NusG [Bifidobacterium bifidum
S17]
gi|309250737|gb|ADO52485.1| transcription antitermination factor NusG [Bifidobacterium bifidum
S17]
Length = 280
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R+ GL+ + +I +P E V K R PG
Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRVPG 154
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ ++ +
Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274
Query: 172 QVEKI 176
QVEK+
Sbjct: 275 QVEKL 279
>gi|295133023|ref|YP_003583699.1| transcription antitermination protein [Zunongwangia profunda
SM-A87]
gi|294981038|gb|ADF51503.1| transcription antitermination protein [Zunongwangia profunda
SM-A87]
Length = 183
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K + I +S G++ V ++ +P+E+V+ +R G+K+N ER +FP
Sbjct: 7 KKWYVVRAVSGQENKVKDYIEREISHMGMEDWVDQVLVPTEKVIQIRNGKKINKERVYFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY++I+A + ++ H IK VIGFLG G +P P+ SE+ ++ +V+ +V+
Sbjct: 67 GYIMIQANLGGEIPHIIKGINGVIGFLGETKGGDPVPLRQSEVNRMLGKVDELSVKTDNV 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 AIPFTLGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183
>gi|25027042|ref|NP_737096.1| transcription antitermination protein NusG [Corynebacterium
efficiens YS-314]
gi|259508475|ref|ZP_05751375.1| transcription antitermination protein NusG [Corynebacterium
efficiens YS-314]
gi|23492322|dbj|BAC17296.1| putative transcription antitermination protein NusG
[Corynebacterium efficiens YS-314]
gi|259163939|gb|EEW48493.1| transcription antitermination protein NusG [Corynebacterium
efficiens YS-314]
Length = 287
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY
Sbjct: 93 WYIIQCYSGYENKVKANLDMRAQTLEVEEDIYEVVVPIEQVTEIRDGKRKLVKRKLLPGY 152
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ M D+V+ ++DTP V F+G N + V ++ + E+AV
Sbjct: 153 VLVRMEMNDRVWSVVRDTPGVTSFVGNEGNATAVKHRDVAKFLMPQESAVVAGEAAPTTA 212
Query: 115 ------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+V F+VGE V + G FAS + + ++D E ++ V IFGR
Sbjct: 213 EGEQVVAMPTDSAAQQVTVDFQVGEAVTILTGAFASVSATISSIDVENQKLEALVSIFGR 272
Query: 163 VTPVELAYNQVEKI 176
TPV+L ++QVEKI
Sbjct: 273 ETPVDLKFDQVEKI 286
>gi|302876547|ref|YP_003845180.1| NusG antitermination factor [Clostridium cellulovorans 743B]
gi|307687220|ref|ZP_07629666.1| transcription antitermination protein NusG [Clostridium
cellulovorans 743B]
gi|302579404|gb|ADL53416.1| NusG antitermination factor [Clostridium cellulovorans 743B]
Length = 173
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V +S E K ++ + L + +I IP V + G++ + ++ P
Sbjct: 5 AKWYVVNTFSGYENKVKATLEKSIDNRNLHNYFYDIQIPMSEEVEEKDGKQKVALKKLLP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV IK +MTD ++ +++T V GF+G P +T+ EI+ + + ++V
Sbjct: 65 GYVFIKMIMTDDTWYIVRNTRGVSGFVGPAGKPVSLTNEEIDRM------GINDTPATVD 118
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVGE V ++ G FN + V+ EK ++ V +FGR TP EL + QVEK+
Sbjct: 119 MEVGETVLITSGALKGFNAQITEVNIEKQKIKGLVDMFGRETPAELDFAQVEKL 172
>gi|34580870|ref|ZP_00142350.1| transcription antitermination protein NusG [Rickettsia sibirica
246]
gi|28262255|gb|EAA25759.1| transcription antitermination protein NusG [Rickettsia sibirica
246]
Length = 192
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGVEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKDVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|57237527|ref|YP_178541.1| transcription antitermination protein NusG [Campylobacter jejuni
RM1221]
gi|86148936|ref|ZP_01067168.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|86151847|ref|ZP_01070061.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153839|ref|ZP_01072042.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni HB93-13]
gi|88597087|ref|ZP_01100323.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 84-25]
gi|121613601|ref|YP_001000180.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 81-176]
gi|148925852|ref|ZP_01809539.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8486]
gi|157414766|ref|YP_001482022.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 81116]
gi|167005138|ref|ZP_02270896.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205355346|ref|ZP_03222117.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8421]
gi|218562128|ref|YP_002343907.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|283955895|ref|ZP_06373385.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 1336]
gi|315124017|ref|YP_004066021.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|14423820|sp|Q9PI36|NUSG_CAMJE RecName: Full=Transcription antitermination protein nusG
gi|57166331|gb|AAW35110.1| transcription antitermination protein NusG [Campylobacter jejuni
RM1221]
gi|85840294|gb|EAQ57551.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|85841476|gb|EAQ58724.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85842800|gb|EAQ60012.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni HB93-13]
gi|88190776|gb|EAQ94749.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112359834|emb|CAL34621.1| transcription antitermination protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|121504265|gb|EAQ73248.2| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 81-176]
gi|145844838|gb|EDK21942.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8486]
gi|157385730|gb|ABV52045.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 81116]
gi|205346580|gb|EDZ33212.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni CG8421]
gi|283792555|gb|EFC31334.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni 1336]
gi|284925740|gb|ADC28092.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni IA3902]
gi|307747405|gb|ADN90675.1| Transcription antitermination protein nusG [Campylobacter jejuni
subsp. jejuni M1]
gi|315017739|gb|ADT65832.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315057893|gb|ADT72222.1| Transcription antitermination protein NusG [Campylobacter jejuni
subsp. jejuni S3]
gi|315928198|gb|EFV07515.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315929765|gb|EFV08935.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni 305]
gi|315931086|gb|EFV10060.1| transcription termination/antitermination factor NusG
[Campylobacter jejuni subsp. jejuni 327]
Length = 177
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|302330016|gb|ADL20210.1| Transcription anti-termination protein NusG [Corynebacterium
pseudotuberculosis 1002]
gi|308275699|gb|ADO25598.1| Transcription anti-termination protein NusG [Corynebacterium
pseudotuberculosis I19]
Length = 295
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + ++ +P E+ V +R G++ +R+ PGY
Sbjct: 100 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 159
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------------- 109
VL++ + D+ + ++DTP V F+G N +PV ++ +
Sbjct: 160 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 219
Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ A +P V F+VGE V + G AS + + +D E +++ V IFG
Sbjct: 220 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 279
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL ++QVEK+
Sbjct: 280 RETPVELNFDQVEKV 294
>gi|86140286|ref|ZP_01058845.1| putative transcription antitermination protein [Leeuwenhoekiella
blandensis MED217]
gi|85832228|gb|EAQ50677.1| putative transcription antitermination protein [Leeuwenhoekiella
blandensis MED217]
Length = 184
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY+V+ S E K I +SR L+ + ++ +P+E+VV +R G+K+N ER +F
Sbjct: 7 TKDWYVVRAVSGQENKVKGYIEQEISRFNLEDYIEQVLVPTEKVVQIRNGKKINKERVYF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPV 118
PGY++I A + +V H IK VIGFLG G +P P+ SE+ ++ +V+ AV+
Sbjct: 67 PGYIMIHANLGGEVTHMIKSINGVIGFLGETKGGDPVPLRTSEVNRMLGKVDELAVKTDN 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 VAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184
>gi|313115119|ref|ZP_07800606.1| transcription termination/antitermination factor NusG
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622559|gb|EFQ06027.1| transcription termination/antitermination factor NusG
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 177
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY+V YS E K + + L L+ +I +P E V + + G++ E + FPG
Sbjct: 10 WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VM D ++ +++T GF+G P P++ E+E + + +V F
Sbjct: 70 YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM-----GVEKAAPLAVDF 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 125 NVGDTVQITAGPLEGFMGLVEEIDTENFKVKLKVNMFGRETPAEVEIGQVE 175
>gi|283954236|ref|ZP_06371760.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 414]
gi|283794254|gb|EFC32999.1| putative transcription antitermination protein [Campylobacter
jejuni subsp. jejuni 414]
Length = 177
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLAKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V + +GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRIIEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|229586374|ref|YP_002844875.1| transcription antitermination protein NusG [Rickettsia africae
ESF-5]
gi|228021424|gb|ACP53132.1| Transcription antitermination protein NusG [Rickettsia africae
ESF-5]
Length = 192
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTGFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|307691690|ref|ZP_07633927.1| NusG antitermination factor [Ruminococcaceae bacterium D16]
Length = 174
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E +I + L ++ EI+IP E V + ER+ FPGY
Sbjct: 7 WYVVHTYSGYENTVKATIEKYVENRHLQDMIHEISIPLETVTEITDNGPKEVERKVFPGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+K VM D+ +H +++ V GFLG G P P+++ ++ + V++ V ++
Sbjct: 67 VLVKMVMNDETWHVVRNIRGVTGFLGEGNKPIPLSEDDVASL------GVEKREVVVGYQ 120
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++DG SF G V+ +D E+ +V V V +FGR TPVEL +QVE +
Sbjct: 121 VGDSVKITDGALESFLGTVEELDLERGKVRVVVSMFGRETPVELELDQVEPM 172
>gi|157828050|ref|YP_001494292.1| transcription antitermination protein NusG [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165932747|ref|YP_001649536.1| transcription antitermination protein NusG [Rickettsia rickettsii
str. Iowa]
gi|157800531|gb|ABV75784.1| transcription antitermination protein NusG [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165907834|gb|ABY72130.1| transcription antitermination protein [Rickettsia rickettsii str.
Iowa]
Length = 192
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 109/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEGIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190
>gi|221194673|ref|ZP_03567730.1| transcription termination/antitermination factor NusG [Atopobium
rimae ATCC 49626]
gi|221185577|gb|EEE17967.1| transcription termination/antitermination factor NusG [Atopobium
rimae ATCC 49626]
Length = 184
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV----NS 56
M RWY++ YS E K + + R+ GL V ++ P E V V+K +
Sbjct: 1 MAKRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTK 60
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
E +F+PGYVL++ + D + +++TP V GFLG PSP+ E +M +
Sbjct: 61 EVKFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDGKPSPLRREEFNKMMRRSGGKADA 120
Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ EVG+ V V GP A F+GIV V+ E ++ V + IFGR TPVEL +Q+
Sbjct: 121 TTLKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180
>gi|194333127|ref|YP_002014987.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
gi|194310945|gb|ACF45340.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 191
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 105/174 (60%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY +++YS E+K E I + R GL + ++ +P ER V V+ G+K + + FP
Sbjct: 16 ARWYALRIYSGHERKVKEGIESEVERLGLADKLLQVYVPYERFVEVKNGKKRSLTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P V+GFLG G+ P+P+ E+E I+ + QR V
Sbjct: 76 GYVLIEAVLDKQTRNLIMDIPSVMGFLGVGDVPTPLRPDEVEKILEPESSVEQRSVVEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 FQIGDSVKVVDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|298346273|ref|YP_003718960.1| transcription antitermination protein [Mobiluncus curtisii ATCC
43063]
gi|304389961|ref|ZP_07371918.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315657212|ref|ZP_07910096.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|298236334|gb|ADI67466.1| transcription antitermination protein [Mobiluncus curtisii ATCC
43063]
gi|304326854|gb|EFL94095.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315492315|gb|EFU81922.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 271
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 18/191 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ V ++ IP E V V+ + +R P
Sbjct: 80 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKVVQRPRIP 139
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVL++ M + + +KDTP V GF+G ++P P+T +E+ +++
Sbjct: 140 GYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVEDG 199
Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+A + + FEVG+ V ++ GPF + + + V+ E ++ V V IF R TP
Sbjct: 200 QVEISQATQRTAPVAADFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERETP 259
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 260 VELNFNQVTKI 270
>gi|320449272|ref|YP_004201368.1| transcription termination/antitermination factor NusG [Thermus
scotoductus SA-01]
gi|320149441|gb|ADW20819.1| transcription termination/antitermination factor NusG [Thermus
scotoductus SA-01]
Length = 184
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
M+ WY V Y E+KA ++ R+ G++ + ++ IP+E VV +R+G K ++
Sbjct: 1 MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVELREGGKKEVVKKK 60
Query: 60 FFPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEA 112
FPGY+ ++ + D+ + ++ TP + GF+G G P P++ E+ HI+ + +
Sbjct: 61 LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ P + V F G++V V GPFA F G V ++ EK +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180
Query: 173 VEK 175
V K
Sbjct: 181 VVK 183
>gi|311029034|ref|ZP_07707124.1| transcription antitermination protein NusG [Bacillus sp. m3-13]
Length = 177
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E ++ G+K ++++
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVTKKKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ D EI I+ ++ ++
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLDDEIAFILKRMGMMEKQ- 119
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++ E V V++GPFA+F G + +D++K +V V V +FGR TPVEL + Q+EK+
Sbjct: 120 -VEVDFDLKESVKVTEGPFANFTGHIVEMDKDKHKVKVLVNMFGRETPVELDFTQIEKL 177
>gi|300857721|ref|YP_003782704.1| transcription antitermination protein [Corynebacterium
pseudotuberculosis FRC41]
gi|300685175|gb|ADK28097.1| transcription antitermination protein [Corynebacterium
pseudotuberculosis FRC41]
gi|302205463|gb|ADL09805.1| Transcription anti-termination protein NusG [Corynebacterium
pseudotuberculosis C231]
Length = 276
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R ++ + ++ +P E+ V +R G++ +R+ PGY
Sbjct: 81 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 140
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------------- 109
VL++ + D+ + ++DTP V F+G N +PV ++ +
Sbjct: 141 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 200
Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ A +P V F+VGE V + G AS + + +D E +++ V IFG
Sbjct: 201 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 260
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL ++QVEK+
Sbjct: 261 RETPVELNFDQVEKV 275
>gi|269121551|ref|YP_003309728.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386]
gi|268615429|gb|ACZ09797.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386]
Length = 198
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 15/191 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WYI+ YS EKK + R+ L V I +P E ++ ++G+ V R+
Sbjct: 8 LEKKWYIIHTYSGYEKKVKADLEKRVVTLNLTDRVFRILVPEEEIMEEKRGKMVKVPRKL 67
Query: 61 FPGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
FPGYV+++ + ++ I++T V GF+G G +P P+ D E + ++
Sbjct: 68 FPGYVMVEMLSKKEENDLGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLADDEAKSLL 127
Query: 108 NQV--EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+++ + + P + + EVGE+V V +G F + + VD E RV V V +FGR+TP
Sbjct: 128 SKIGLDESASAPKARLDLEVGEKVIVKNGAFENQEAEIAEVDHEHGRVKVMVEVFGRMTP 187
Query: 166 VELAYNQVEKI 176
VEL Y++V KI
Sbjct: 188 VELEYHEVRKI 198
>gi|224282356|ref|ZP_03645678.1| NusG antitermination factor [Bifidobacterium bifidum NCIMB 41171]
gi|313139500|ref|ZP_07801693.1| transcription antitermination protein nusG [Bifidobacterium bifidum
NCIMB 41171]
gi|313132010|gb|EFR49627.1| transcription antitermination protein nusG [Bifidobacterium bifidum
NCIMB 41171]
Length = 280
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R+ GL+ + +I +P E V K R PG
Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRVPG 154
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G ++P+P++ E+ ++ +
Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL ++
Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274
Query: 172 QVEKI 176
QVEK+
Sbjct: 275 QVEKL 279
>gi|289803599|ref|ZP_06534228.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 153
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 72/152 (47%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
+ ++ L E+ +P+E VV +R G++ SER+FFPGYVL++ VM D +H ++ P+
Sbjct: 1 HIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPR 60
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
V+GF+G T + P+P++D E++ IMN+++ +P FE GE V V+DGPFA FNG+V
Sbjct: 61 VMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVV 120
Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 EEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 152
>gi|15604011|ref|NP_220526.1| transcription antitermination protein NusG [Rickettsia prowazekii
str. Madrid E]
gi|1709419|sp|P50056|NUSG_RICPR RecName: Full=Transcription antitermination protein nusG
gi|987968|emb|CAA90886.1| transcription antitermination factor NusG [Rickettsia prowazekii]
gi|3860702|emb|CAA14603.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (nusG) [Rickettsia
prowazekii]
gi|292571729|gb|ADE29644.1| Transcription antitermination protein NusG [Rickettsia prowazekii
Rp22]
Length = 192
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E I ++++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+ ++R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEAIDKARNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|269977529|ref|ZP_06184498.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris 28-1]
gi|269934284|gb|EEZ90849.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris 28-1]
Length = 264
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P
Sbjct: 74 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 133
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++ A + +
Sbjct: 134 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 193
Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FEVG+ V ++ GPF + + + + S++ V V IF R TPV
Sbjct: 194 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 253
Query: 167 ELAYNQVEKIV 177
EL ++QVEKI+
Sbjct: 254 ELNFDQVEKIL 264
>gi|313496807|gb|ADR58173.1| NusG [Pseudomonas putida BIRD-1]
Length = 159
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+KDTP+V+GF+G T + P+P+TD E E I+ +V +P FE GE V V DGPFA
Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVIDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 159
>gi|284047641|ref|YP_003397980.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731]
gi|283951862|gb|ADB46665.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731]
Length = 191
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 100/186 (53%), Gaps = 12/186 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ YS E K ++ ++ G++ + ++ +P + V + ++ R+ FP
Sbjct: 5 KHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----------QVEA 112
GYVLI+ ++ D+ ++ +++TP V GF+GTG P P++D E+E I+
Sbjct: 65 GYVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSDREVERILGAQPKEGDKAEAAGK 124
Query: 113 AVQRPVSSVFFEVG--ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AV+ PV + VG + V + F G V +++E+ ++ V V +FGR TP+E+ +
Sbjct: 125 AVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEVKF 184
Query: 171 NQVEKI 176
QVE I
Sbjct: 185 TQVEAI 190
>gi|227873027|ref|ZP_03991322.1| transcriptional antiterminator NusG [Oribacterium sinus F0268]
gi|227841102|gb|EEJ51437.1| transcriptional antiterminator NusG [Oribacterium sinus F0268]
Length = 176
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+ YS E K + + GL ++ E+++P + V+ V+ G + ++++ F
Sbjct: 7 EARWYVAHTYSGYENKVKMDLEKTIDNRGLQDVILEVSVPMQPVIEVKNGVEKKTDKKMF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D+ ++ +++T V GF+G G P P+++ EI + ++ V
Sbjct: 67 PGYVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEI------LTLGYRKSEVLV 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V V G + G++ ++++K V + V +FGR TPVEL+Y +V+K+
Sbjct: 121 DFAEGDTVSVVSGAWKDTVGVITEINDQKKTVTINVEMFGRDTPVELSYGEVQKL 175
>gi|78776549|ref|YP_392864.1| transcription antitermination protein NusG [Sulfurimonas
denitrificans DSM 1251]
gi|78497089|gb|ABB43629.1| transcription antitermination protein nusG [Sulfurimonas
denitrificans DSM 1251]
Length = 179
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY +Q Y E+ +I + L +T++ +P+E V+ V+ G+K SER +
Sbjct: 6 SHQWYSIQTY-GNERTVRLAILNLIEEMRLQDFITDVIVPTEDVIEVKDGKKKISERSLY 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + + ++ H I+ PKV GF+G P+P+++ +I I+++V+ P V
Sbjct: 65 SGYVFARIELNTEIQHIIQSIPKVSGFIGEANIPTPLSEHDINVILDRVQNRAA-PKPKV 123
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FF+ GE V ++DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+
Sbjct: 124 FFDNGETVRITDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 179
>gi|313900413|ref|ZP_07833906.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
gi|312954475|gb|EFR36150.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
Length = 183
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E + E++ R+ GL + + + E+ + + G++V F
Sbjct: 7 KQWYVVNTYAGHENRVKENLLRRVESMGLQDYLFRVIVAEEKEIEYKNGKEVEKTTNLFS 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ +MTD+ ++ +++TP V GF+G+ G P PV + E+E I+ ++ + ++
Sbjct: 67 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMESILRRLGMSERK--V 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VG+RV + G FA+ G V+ + E+ V ++FGR TP E+ Y ++EK+
Sbjct: 125 QIDFAVGDRVRILSGAFANVEGTVEELHEDSQTAVVLTILFGRETPTEIGYGELEKV 181
>gi|153951948|ref|YP_001398490.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. doylei 269.97]
gi|152939394|gb|ABS44135.1| transcription antitermination protein NusG [Campylobacter jejuni
subsp. doylei 269.97]
Length = 177
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER +
Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P +
Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVYNRAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177
>gi|229015498|ref|ZP_04172496.1| Transcription antitermination protein nusG [Bacillus cereus AH1273]
gi|229021707|ref|ZP_04178289.1| Transcription antitermination protein nusG [Bacillus cereus AH1272]
gi|228739575|gb|EEL89989.1| Transcription antitermination protein nusG [Bacillus cereus AH1272]
gi|228745785|gb|EEL95789.1| Transcription antitermination protein nusG [Bacillus cereus AH1273]
Length = 177
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V +R G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMRNGKEKLMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|229074157|ref|ZP_04207203.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-18]
gi|229094818|ref|ZP_04225823.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-29]
gi|229100895|ref|ZP_04231699.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-28]
gi|229113772|ref|ZP_04243207.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-3]
gi|228669643|gb|EEL25050.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-3]
gi|228682474|gb|EEL36547.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-28]
gi|228688561|gb|EEL42434.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-29]
gi|228708927|gb|EEL61054.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-18]
Length = 177
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKIMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|163938104|ref|YP_001642988.1| transcription antitermination protein NusG [Bacillus
weihenstephanensis KBAB4]
gi|229009605|ref|ZP_04166831.1| Transcription antitermination protein nusG [Bacillus mycoides DSM
2048]
gi|229053942|ref|ZP_04195376.1| Transcription antitermination protein nusG [Bacillus cereus AH603]
gi|229131103|ref|ZP_04260015.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST196]
gi|229165084|ref|ZP_04292879.1| Transcription antitermination protein nusG [Bacillus cereus AH621]
gi|163860301|gb|ABY41360.1| NusG antitermination factor [Bacillus weihenstephanensis KBAB4]
gi|228618347|gb|EEK75377.1| Transcription antitermination protein nusG [Bacillus cereus AH621]
gi|228652316|gb|EEL08241.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST196]
gi|228721360|gb|EEL72881.1| Transcription antitermination protein nusG [Bacillus cereus AH603]
gi|228751627|gb|EEM01427.1| Transcription antitermination protein nusG [Bacillus mycoides DSM
2048]
Length = 177
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKITKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFEFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|53715482|ref|YP_101474.1| transcription anti-termination protein [Bacteroides fragilis YCH46]
gi|60683455|ref|YP_213599.1| putative transcription antitermination protein [Bacteroides
fragilis NCTC 9343]
gi|253566653|ref|ZP_04844106.1| transcription anti-termination protein [Bacteroides sp. 3_2_5]
gi|255011630|ref|ZP_05283756.1| putative transcription antitermination protein [Bacteroides
fragilis 3_1_12]
gi|265767531|ref|ZP_06095197.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_16]
gi|313149465|ref|ZP_07811658.1| transcription anti-termination protein [Bacteroides fragilis
3_1_12]
gi|52218347|dbj|BAD50940.1| transcription anti-termination protein [Bacteroides fragilis YCH46]
gi|60494889|emb|CAH09696.1| putative transcription antitermination protein [Bacteroides
fragilis NCTC 9343]
gi|251944825|gb|EES85300.1| transcription anti-termination protein [Bacteroides sp. 3_2_5]
gi|263252836|gb|EEZ24348.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_16]
gi|301164939|emb|CBW24500.1| putative transcription antitermination protein [Bacteroides
fragilis 638R]
gi|313138232|gb|EFR55592.1| transcription anti-termination protein [Bacteroides fragilis
3_1_12]
Length = 180
Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVSHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQETGEDL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NVPYIVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|310829151|ref|YP_003961508.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612]
gi|308740885|gb|ADO38545.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612]
Length = 179
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ YS E K SI + ++ + E+ +P + VV + G++V E++ FPGY
Sbjct: 11 WYVAHTYSGYENKVKASIEATVENRHMEDQILEVQVPVQEVVETKDGKRVVREKKLFPGY 70
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V++K MTD ++ +++T V GF+G P P+T +E++++ +++ + E
Sbjct: 71 VMVKMFMTDDSWYVVRNTRGVTGFVGPASKPVPLTKAELKNM------GIKQQAIQIDLE 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF F GI++ ++ EKS+V V + +FGR TP EL + Q++KI
Sbjct: 125 VGDEVNVVDGPFEGFAGIIEEINLEKSKVKVNISMFGRETPTELEFEQIQKI 176
>gi|296130513|ref|YP_003637763.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109]
gi|296022328|gb|ADG75564.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109]
Length = 255
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + ++ +P E VV ++ ++ +R PGY
Sbjct: 74 WYVIHSYAGYENRVKANLESRTQSLNMEDYIHQVEVPMEEVVEIKNAQRKVVKRVRIPGY 133
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV------ 118
VL++ +TD+ + ++ TP V GF+G P P+T E+ ++
Sbjct: 134 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPAIETKAPAQQAAKAS 193
Query: 119 ---SSVFFEVGERVCVSD-GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V F VGE V V+D GPF + + ++ E ++ V V +FGR TPVEL+++QV
Sbjct: 194 SKPVEVDFTVGESVTVTDGGPFDTLPATISEINPENQKLKVLVSLFGRETPVELSFSQVS 253
Query: 175 KI 176
KI
Sbjct: 254 KI 255
>gi|30018366|ref|NP_829997.1| transcription antitermination protein NusG [Bacillus cereus ATCC
14579]
gi|30260287|ref|NP_842664.1| transcription antitermination protein NusG [Bacillus anthracis str.
Ames]
gi|42779177|ref|NP_976424.1| transcription antitermination protein NusG [Bacillus cereus ATCC
10987]
gi|49183130|ref|YP_026382.1| transcription antitermination protein NusG [Bacillus anthracis str.
Sterne]
gi|49476713|ref|YP_034448.1| transcription antitermination protein NusG [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|50196907|ref|YP_016699.2| transcription antitermination protein NusG [Bacillus anthracis str.
'Ames Ancestor']
gi|52145121|ref|YP_081707.1| transcription antitermination protein NusG [Bacillus cereus E33L]
gi|65317556|ref|ZP_00390515.1| COG0250: Transcription antiterminator [Bacillus anthracis str.
A2012]
gi|118475865|ref|YP_893016.1| transcription antitermination protein NusG [Bacillus thuringiensis
str. Al Hakam]
gi|170689570|ref|ZP_02880756.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0465]
gi|177655596|ref|ZP_02936977.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0174]
gi|206972266|ref|ZP_03233213.1| transcription antitermination protein NusG [Bacillus cereus AH1134]
gi|217957671|ref|YP_002336215.1| transcription antitermination protein NusG [Bacillus cereus AH187]
gi|218231706|ref|YP_002364945.1| transcription antitermination protein NusG [Bacillus cereus B4264]
gi|218895231|ref|YP_002443642.1| transcription antitermination protein NusG [Bacillus cereus G9842]
gi|222093866|ref|YP_002527916.1| transcription antitermination protein nusg [Bacillus cereus Q1]
gi|225862148|ref|YP_002747526.1| transcription antitermination protein NusG [Bacillus cereus
03BB102]
gi|227812769|ref|YP_002812778.1| transcription antitermination protein NusG [Bacillus anthracis str.
CDC 684]
gi|228898849|ref|ZP_04063131.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 4222]
gi|228905893|ref|ZP_04069790.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 200]
gi|228912835|ref|ZP_04076482.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228919046|ref|ZP_04082425.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228925349|ref|ZP_04088445.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931598|ref|ZP_04094504.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228937398|ref|ZP_04100044.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228943902|ref|ZP_04106287.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228950644|ref|ZP_04112778.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228956537|ref|ZP_04118333.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228963196|ref|ZP_04124365.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228970284|ref|ZP_04130943.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976854|ref|ZP_04137266.1| Transcription antitermination protein nusG [Bacillus thuringiensis
Bt407]
gi|228983351|ref|ZP_04143564.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229027944|ref|ZP_04184097.1| Transcription antitermination protein nusG [Bacillus cereus AH1271]
gi|229041001|ref|ZP_04189764.1| Transcription antitermination protein nusG [Bacillus cereus AH676]
gi|229067861|ref|ZP_04201178.1| Transcription antitermination protein nusG [Bacillus cereus F65185]
gi|229089227|ref|ZP_04220508.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-42]
gi|229107782|ref|ZP_04237418.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-15]
gi|229119758|ref|ZP_04249019.1| Transcription antitermination protein nusG [Bacillus cereus
95/8201]
gi|229125613|ref|ZP_04254645.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-Cer4]
gi|229136942|ref|ZP_04265569.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST26]
gi|229142902|ref|ZP_04271343.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST24]
gi|229148505|ref|ZP_04276761.1| Transcription antitermination protein nusG [Bacillus cereus m1550]
gi|229153874|ref|ZP_04282004.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
4342]
gi|229159269|ref|ZP_04287293.1| Transcription antitermination protein nusG [Bacillus cereus
R309803]
gi|229170947|ref|ZP_04298548.1| Transcription antitermination protein nusG [Bacillus cereus MM3]
gi|229176696|ref|ZP_04304100.1| Transcription antitermination protein nusG [Bacillus cereus
172560W]
gi|229182490|ref|ZP_04309741.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|229188381|ref|ZP_04315429.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
10876]
gi|229194486|ref|ZP_04321289.1| Transcription antitermination protein nusG [Bacillus cereus m1293]
gi|229604171|ref|YP_002864747.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. A0248]
gi|254684400|ref|ZP_05148260.1| transcription antitermination protein NusG [Bacillus anthracis str.
CNEVA-9066]
gi|254733749|ref|ZP_05191464.1| transcription antitermination protein NusG [Bacillus anthracis str.
Western North America USA6153]
gi|254739418|ref|ZP_05197118.1| transcription antitermination protein NusG [Bacillus anthracis str.
Kruger B]
gi|254751209|ref|ZP_05203247.1| transcription antitermination protein NusG [Bacillus anthracis str.
Vollum]
gi|254756808|ref|ZP_05208836.1| transcription antitermination protein NusG [Bacillus anthracis str.
Australia 94]
gi|300119593|ref|ZP_07057137.1| transcription antitermination protein NusG [Bacillus cereus SJ1]
gi|301051833|ref|YP_003790044.1| transcription antitermination protein NusG [Bacillus anthracis CI]
gi|29893906|gb|AAP07198.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
14579]
gi|30253608|gb|AAP24150.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. Ames]
gi|42735092|gb|AAS39032.1| transcription antitermination protein NusG [Bacillus cereus ATCC
10987]
gi|49177057|gb|AAT52433.1| transcription antitermination protein NusG [Bacillus anthracis str.
Sterne]
gi|49328269|gb|AAT58915.1| transcription antitermination factor [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|50082969|gb|AAT29174.2| transcription antitermination protein NusG [Bacillus anthracis str.
'Ames Ancestor']
gi|51978590|gb|AAU20140.1| transcription antitermination factor [Bacillus cereus E33L]
gi|118415090|gb|ABK83509.1| transcription antitermination protein nusG [Bacillus thuringiensis
str. Al Hakam]
gi|170666483|gb|EDT17260.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0465]
gi|172080060|gb|EDT65158.1| transcription antitermination protein NusG [Bacillus anthracis str.
A0174]
gi|206732840|gb|EDZ50015.1| transcription antitermination protein NusG [Bacillus cereus AH1134]
gi|217068204|gb|ACJ82454.1| transcription antitermination protein NusG [Bacillus cereus AH187]
gi|218159663|gb|ACK59655.1| transcription termination/antitermination factor NusG [Bacillus
cereus B4264]
gi|218543346|gb|ACK95740.1| transcription antitermination protein NusG [Bacillus cereus G9842]
gi|221237914|gb|ACM10624.1| transcription antitermination factor [Bacillus cereus Q1]
gi|225790801|gb|ACO31018.1| transcription termination/antitermination factor NusG [Bacillus
cereus 03BB102]
gi|227003815|gb|ACP13558.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. CDC 684]
gi|228588952|gb|EEK46967.1| Transcription antitermination protein nusG [Bacillus cereus m1293]
gi|228595055|gb|EEK52826.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
10876]
gi|228600945|gb|EEK58514.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|228606739|gb|EEK64156.1| Transcription antitermination protein nusG [Bacillus cereus
172560W]
gi|228612487|gb|EEK69708.1| Transcription antitermination protein nusG [Bacillus cereus MM3]
gi|228624161|gb|EEK80963.1| Transcription antitermination protein nusG [Bacillus cereus
R309803]
gi|228629555|gb|EEK86252.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
4342]
gi|228634921|gb|EEK91494.1| Transcription antitermination protein nusG [Bacillus cereus m1550]
gi|228640523|gb|EEK96912.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST24]
gi|228646480|gb|EEL02687.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-ST26]
gi|228657805|gb|EEL13611.1| Transcription antitermination protein nusG [Bacillus cereus
BDRD-Cer4]
gi|228663659|gb|EEL19238.1| Transcription antitermination protein nusG [Bacillus cereus
95/8201]
gi|228675631|gb|EEL30839.1| Transcription antitermination protein nusG [Bacillus cereus
Rock1-15]
gi|228694066|gb|EEL47748.1| Transcription antitermination protein nusG [Bacillus cereus
Rock3-42]
gi|228715220|gb|EEL67079.1| Transcription antitermination protein nusG [Bacillus cereus F65185]
gi|228727298|gb|EEL78492.1| Transcription antitermination protein nusG [Bacillus cereus AH676]
gi|228733332|gb|EEL84161.1| Transcription antitermination protein nusG [Bacillus cereus AH1271]
gi|228776341|gb|EEM24694.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228782824|gb|EEM30990.1| Transcription antitermination protein nusG [Bacillus thuringiensis
Bt407]
gi|228789393|gb|EEM37313.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228796454|gb|EEM43893.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228803102|gb|EEM49924.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228808995|gb|EEM55480.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228815735|gb|EEM61971.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228822231|gb|EEM68213.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228828026|gb|EEM73754.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834271|gb|EEM79812.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228840571|gb|EEM85833.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228846771|gb|EEM91776.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228853708|gb|EEM98468.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 200]
gi|228860749|gb|EEN05127.1| Transcription antitermination protein nusG [Bacillus thuringiensis
IBL 4222]
gi|229268579|gb|ACQ50216.1| transcription termination/antitermination factor NusG [Bacillus
anthracis str. A0248]
gi|298723065|gb|EFI63963.1| transcription antitermination protein NusG [Bacillus cereus SJ1]
gi|300374002|gb|ADK02906.1| transcription antitermination protein NusG [Bacillus cereus biovar
anthracis str. CI]
gi|324324086|gb|ADY19346.1| transcription antitermination protein NusG [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|326937890|gb|AEA13786.1| transcription antitermination protein NusG [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 177
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD ++ +++TP V GF+ G+G PSP+ + E+ IM + +
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNE 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 VVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177
>gi|167627264|ref|YP_001677764.1| transcription antitermination protein NusG [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|241667819|ref|ZP_04755397.1| transcription antitermination protein NusG [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254876363|ref|ZP_05249073.1| transcription antitermination protein nusG [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|167597265|gb|ABZ87263.1| transcription antitermination protein NusG [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254842384|gb|EET20798.1| transcription antitermination protein nusG [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 177
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV+S EK+ + + +GL I +P+E VV ++ G+K SER++FPGY
Sbjct: 3 WYVVQVHSGYEKRVKTQLEENIEIAGLKENFGRILVPTENVVEMKGGQKRKSERKYFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
VLI+A +T + + IK P+V+ +G+ P P++ +E+E I+ VE + P
Sbjct: 63 VLIEANLTTEAWDIIKAVPRVLTVVGSRGKPIPLSKAEVERILGFVEGSTSTVEPRLRKT 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175
>gi|325108569|ref|YP_004269637.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305]
gi|324968837|gb|ADY59615.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305]
Length = 199
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+++V SN EK +S+ R+ R ++ EI IP+E+VV + G+K E+R +
Sbjct: 24 EMRWYVLKVQSNREKSIRDSLNRRIKRDHMEDYFGEIIIPTEKVVETKGGKKRVREQRLY 83
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
PGY++I+ ++ D ++ ++DT V F G P P+ D EI ++ E+ P
Sbjct: 84 PGYIMIQMILNDDSWYLVRDTGGVGDFTGAAGKPIPMQDQEIARMLGAEESKQAEPTKVK 143
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V + +G F SF G ++ +DE ++ V + IFGR TPVEL + QVEKI
Sbjct: 144 IDLAVGDTVKIGEGTFESFEGSIEAIDEASGKISVLIEIFGRPTPVELEHWQVEKI 199
>gi|145220413|ref|YP_001131122.1| transcription antitermination protein nusG [Prosthecochloris
vibrioformis DSM 265]
gi|145206577|gb|ABP37620.1| transcription antitermination protein nusG [Chlorobium
phaeovibrioides DSM 265]
Length = 191
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 103/174 (59%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY +++YS E+K E I + RSGL + ++ +P ER + V+ G+K + FP
Sbjct: 16 ARWYALRIYSGHERKVKEGIEAEVERSGLGDKILQVYVPYERFIEVKNGKKRAMTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P ++GFLG +NP P+ E+E ++ A +R V
Sbjct: 76 GYVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPESAVTERTVVEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 YNVGDSVKVIDGPFSSLAGVVHEVCPERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|315639708|ref|ZP_07894847.1| transcription antitermination protein NusG [Enterococcus italicus
DSM 15952]
gi|315484485|gb|EFU74942.1| transcription antitermination protein NusG [Enterococcus italicus
DSM 15952]
Length = 214
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K +I R + + + +P E V+ G++ + F
Sbjct: 39 EKSWYVLHTYSGYENKVKTNIESRAQSMRMGDYIFRVVVPEEVEKEVKNGKEKEIVHKTF 98
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + +
Sbjct: 99 PGYVLVEMIMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSLGMSTRTVE 158
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V G+ V + +G F+ G V +DEE+ ++ V + +FGR T EL ++QV+ I
Sbjct: 159 LKVAL--GQTVKIIEGAFSGLEGQVTEIDEERQKLKVNIDMFGRETSTELDFDQVDDI 214
>gi|225164274|ref|ZP_03726545.1| NusG antitermination factor [Opitutaceae bacterium TAV2]
gi|224801116|gb|EEG19441.1| NusG antitermination factor [Opitutaceae bacterium TAV2]
Length = 192
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 63/181 (34%), Positives = 104/181 (57%), Gaps = 8/181 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ + S E K I ++ L + E+ +P+E V V+ G+K R+ +P
Sbjct: 11 AQWFALHTLSGQENKVKLYIDKFIAPEELSDYIFEVLLPTEVVSEVKNGKKTTKTRKLYP 70
Query: 63 GYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYV + A + D+ ++ +K+T VIGF+G G+ P+ + SEI+ I ++EAA
Sbjct: 71 GYVFVHAKLFDEEKKLINKPWYFMKETAGVIGFVG-GDKPAALRQSEIDEIRARIEAASG 129
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V V +EVGE + ++DG FA+ G + +D E+ ++ + V IFGR TPVEL Y QV++
Sbjct: 130 KEVPKVSYEVGEELKITDGAFANLTGRIDEIDPERGKLKISVSIFGRFTPVELEYWQVQR 189
Query: 176 I 176
I
Sbjct: 190 I 190
>gi|167749970|ref|ZP_02422097.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702]
gi|167656991|gb|EDS01121.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702]
gi|291530535|emb|CBK96120.1| transcription antitermination protein nusG [Eubacterium siraeum
70/3]
gi|291557875|emb|CBL34992.1| transcription antitermination protein nusG [Eubacterium siraeum
V10Sc8a]
Length = 173
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI+ YS E K +I + + L HL+ E+ +P+E VV G+ E + F
Sbjct: 3 EAKWYILHTYSGYENKVAGNIMKVVENNNLHHLIEEVMVPTETVVEEHDGKTKTYESKLF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YV +K ++TD+ ++ ++T GF+G G P P+TD E++++ V V+ +
Sbjct: 63 PSYVYVKMILTDESWYICRNTRGCTGFVGPGSKPIPLTDEEVKNL------GVTTKVAEI 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ + + G F G V ++DEE V V +FGR TP + + V+K+
Sbjct: 117 SFAVGDTIKIVSGSLEGFEGTVDSIDEENGTAQVTVSMFGRPTPATVEISAVQKV 171
>gi|315654868|ref|ZP_07907773.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii ATCC 51333]
gi|315490829|gb|EFU80449.1| transcription termination/antitermination factor NusG [Mobiluncus
curtisii ATCC 51333]
Length = 271
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 18/191 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ V ++ IP E V V+ + +R P
Sbjct: 80 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKVVQRPRIP 139
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------ 110
GYVL++ M + + +KDTP V GF+G ++P P+T +E+ +++
Sbjct: 140 GYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVEDG 199
Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+A + + FEVG+ V ++ GPF + + + V+ E ++ V V IF R TP
Sbjct: 200 QVEISQATQRTAPVAADFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERETP 259
Query: 166 VELAYNQVEKI 176
VEL +NQV KI
Sbjct: 260 VELNFNQVTKI 270
>gi|313124310|ref|YP_004034569.1| transcription antitermination protein nusg [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312280873|gb|ADQ61592.1| Transcription antitermination protein nusG [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|325685659|gb|EGD27741.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 194
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P E + +G+K + FP
Sbjct: 17 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 76
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ + E+ I+ Q++
Sbjct: 77 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAIL-QMQEGEATEKV 135
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+EVGE V ++ G F G + + ++K ++ + + +FG EL ++QV+K+
Sbjct: 136 DYDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHAITAELGFDQVKKM 192
>gi|134283248|ref|ZP_01769949.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 305]
gi|134245443|gb|EBA45536.1| transcription termination/antitermination factor NusG [Burkholderia
pseudomallei 305]
Length = 160
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPGYVL++ MTD+ +H
Sbjct: 2 QRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTDETWHL 61
Query: 79 IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+K+T KV GF+G PSP++ E+E IM+Q++ V++P FEVGE V V +GPF
Sbjct: 62 VKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVKEGPFT 121
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 122 DFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 160
>gi|266621462|ref|ZP_06114397.1| transcription termination/antitermination factor NusG [Clostridium
hathewayi DSM 13479]
gi|288866903|gb|EFC99201.1| transcription termination/antitermination factor NusG [Clostridium
hathewayi DSM 13479]
Length = 171
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+++P E V+ ++ G + ++++ F
Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+T+ E+ ++ + E + V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMANLGFRNEEVI------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V G + G +K+++E K + + V +FGR TPVEL +N+++K+
Sbjct: 117 DFEVGDTVVVISGAWKDTVGAIKSINEGKKSITINVEMFGRETPVELNFNEIKKM 171
>gi|218438014|ref|YP_002376343.1| transcription antitermination protein NusG [Cyanothece sp. PCC
7424]
gi|218170742|gb|ACK69475.1| NusG antitermination factor [Cyanothece sp. PCC 7424]
Length = 213
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + + E + F
Sbjct: 29 ARWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPQTPTVKIRKDGSRQHGEEKVF 88
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVL++ +M D + +K+TP VI F+G + P P++ SE+E I Q
Sbjct: 89 PGYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSSSEVERIFRQA 148
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q PV V EVG+++ V GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 149 QG--QEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEF 206
Query: 171 NQVEK 175
NQ+EK
Sbjct: 207 NQIEK 211
>gi|297624698|ref|YP_003706132.1| NusG antitermination factor [Truepera radiovictrix DSM 17093]
gi|297165878|gb|ADI15589.1| NusG antitermination factor [Truepera radiovictrix DSM 17093]
Length = 182
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
M+ WY V Y E+K ++ R G+ + ++ +PSE V G +K R+
Sbjct: 1 MSIEWYAVHTYVGHEEKVRSNMMQRARSLGIADKIYQVVVPSEETVEHTGGGKKEVVRRK 60
Query: 60 FFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
FPGYV ++ + D + + +++TP V GF+GT P+T E ++ + A
Sbjct: 61 LFPGYVFVQMDLGDNPDEPNEAWEVVRNTPGVTGFVGTATRAVPLTPEEEARMLG-ITGA 119
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ P V F VG V V+ GPFA F G+V ++ E+ +V V V IFGR TPVEL ++QV
Sbjct: 120 KETPKVKVNFSVGNIVQVTSGPFADFTGVVSELNPERGKVKVLVSIFGRETPVELDFSQV 179
Query: 174 EK 175
K
Sbjct: 180 IK 181
>gi|255282704|ref|ZP_05347259.1| transcription termination/antitermination factor NusG [Bryantella
formatexigens DSM 14469]
gi|255266725|gb|EET59930.1| transcription termination/antitermination factor NusG [Bryantella
formatexigens DSM 14469]
Length = 171
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K +I + L+ + E+ +P E VV V+ G +++ F
Sbjct: 3 EANWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVSKTVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D ++ +++T V GF+G G P P+T++E+ + +Q V
Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPL------GIQAKNVMV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V G + G+V++++E K V + V +FGR TPVE+ + +++K+
Sbjct: 117 DIEVGDTVSVIGGIWKDTVGVVQSINESKQIVTINVELFGRETPVEIGFAEIQKM 171
>gi|157825315|ref|YP_001493035.1| transcription antitermination protein NusG [Rickettsia akari str.
Hartford]
gi|157799273|gb|ABV74527.1| transcription antitermination protein NusG [Rickettsia akari str.
Hartford]
Length = 192
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 111/173 (64%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTVSGAEKRIKEDLLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK +TDK +H +K+ V GFLG+ P +TDSEI++I N +EA + +S
Sbjct: 78 SYILIKMNITDKSWHLVKNISGVTGFLGSKTTPKALTDSEIQNIFNNLEAEAKEAKNSKV 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G+V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVIVTDGPFETFTGMVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|167756033|ref|ZP_02428160.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402]
gi|167704025|gb|EDS18604.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402]
Length = 185
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+N + FP
Sbjct: 9 RQWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++T V GF+G+ G P P+ SE++ I+ ++ +
Sbjct: 69 GYVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKMGLSTSS--I 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + G+ V V GPFA +G V+++D EK V V G +TP+E+ Q+EK
Sbjct: 127 EVDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 182
>gi|160916271|ref|ZP_02078478.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991]
gi|158431995|gb|EDP10284.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991]
Length = 183
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E + E++ R+ GL + I + E+ + + G++V + F
Sbjct: 7 KQWYVVNTYAGHENRVRENLERRIETMGLQDKLFRIIVAEEKEIEYKNGKEVEKTKNLFS 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ +MTD+ ++ +++TP V GF+G+ G P PV + E+E+I+ ++ + +
Sbjct: 67 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMENILRRLGMSER--KV 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+RV + G FA+ G V+ + +++ V ++FGR TP E+ Y +EK+
Sbjct: 125 QVDFEVGDRVRILSGAFANVEGTVEELHDDEQTAVVLTILFGRETPTEIPYGDLEKV 181
>gi|172056126|ref|YP_001812586.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15]
gi|171988647|gb|ACB59569.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15]
Length = 183
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 10/184 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS---VRKGRKVNSE 57
M +W++VQ YS E ++ R+ +D + + +P E V +KG E
Sbjct: 1 MDKQWFVVQTYSGFENNVKANLERRIESMNMDEKIFRVLVPIETVQEEVTNKKGETKIKE 60
Query: 58 R--RFFPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEA 112
R + FPGYVL++ VMTD ++ +++TP V GF +G G P+P+ E E+I+ +
Sbjct: 61 REIKIFPGYVLVEMVMTDDSWYVVRNTPNVTGFLGSVGGGSKPTPLLPEEAENILGSM-- 118
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ S F +G+ V + +G FA+ G ++ ++ E ++ V V +FGR T VEL ++Q
Sbjct: 119 GLVDMKSRYDFTMGQIVRIKEGVFANLEGTIEELETEAEKMKVSVDMFGRETKVELDFSQ 178
Query: 173 VEKI 176
VEKI
Sbjct: 179 VEKI 182
>gi|259047919|ref|ZP_05738320.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Granulicatella adiacens ATCC 49175]
gi|259035416|gb|EEW36671.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
[Granulicatella adiacens ATCC 49175]
Length = 181
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 4/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K ++ R+ G++ + + +P E V V+ G+ + +
Sbjct: 1 MEKEWYVLHTYSGYENKVKSNLLSRIQSMGMEENIFRVIVPEEEEVEVKDGKTKTTVEKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VM+D+ ++ +++TP V GF+G+ G PSP+ E+E I+ ++ V P
Sbjct: 61 FPGYVLVEMVMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVEAILGRIGEKVHAP 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VG+ V +++G F +G V +D EK ++ V + +FGR T +L ++QV++
Sbjct: 121 V-DLHVSVGDYVIITEGAFNDMSGKVVELDHEKQKIKVAIEMFGRETIADLEFHQVKE 177
>gi|157964201|ref|YP_001499025.1| transcription antitermination protein NusG [Rickettsia massiliae
MTU5]
gi|157843977|gb|ABV84478.1| Transcription antitermination protein NusG [Rickettsia massiliae
MTU5]
Length = 193
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P
Sbjct: 19 KQWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 79 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 138
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 191
>gi|78188330|ref|YP_378668.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3]
gi|78170529|gb|ABB27625.1| transcription antitermination protein nusG [Chlorobium
chlorochromatii CaD3]
Length = 191
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E+I ++R GL + ++ +P ER V V+ G+K + + +P
Sbjct: 16 PRWYALRIYSGHERKVKEAIEFEVARCGLSDKILQVHVPYERFVEVKNGKKRSLTKNAYP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI++V+ + + I D P VIGFLG +NP P+ E+E I+ + R V V
Sbjct: 76 GYVLIESVLDKQTRNLILDVPSVIGFLGVDDNPIPLRPDEVEKILEPEKDVEHRSVVDVP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V DGPF+S G+V V E+ +V V + FGR TP EL + QV+ +
Sbjct: 136 FNVGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRGTPTELDFTQVKPL 189
>gi|78187809|ref|YP_375852.1| NusG antitermination factor [Chlorobium luteolum DSM 273]
gi|78167711|gb|ABB24809.1| transcription antitermination protein nusG [Chlorobium luteolum DSM
273]
Length = 192
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 105/175 (60%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY +++YS E+K E I + RSGL + ++ +P E+ V V+ G+K + + F
Sbjct: 16 AARWYALRIYSGHERKVKEGIDAEVERSGLGDKILQVYVPYEKFVEVKNGKKRSMTKNAF 75
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI+AV+ + + I D P ++GFLG +NP P+ E+E ++ + R +
Sbjct: 76 PGYVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPEASVEHRTIIEA 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 PFQVGDSVKVIDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 190
>gi|160881812|ref|YP_001560780.1| NusG antitermination factor [Clostridium phytofermentans ISDg]
gi|160430478|gb|ABX44041.1| NusG antitermination factor [Clostridium phytofermentans ISDg]
Length = 172
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L + E+++P + V+ V+ G K +++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIEKTIENRKLQDQILEVSVPLQDVIEVKNGVKKKVQKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ +M D ++ +++T V GF+G G P P+TD E++ + +++ + F
Sbjct: 66 VLLNMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDFEMKSM------GIKKDEMVIDFA 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V V G + + G++K ++E K V + + +FGR TPVE+++ V
Sbjct: 120 VGDTVTVVSGVWENTQGVIKAINEHKQIVTINIDMFGRETPVEISFTDVR 169
>gi|325068005|ref|ZP_08126678.1| NusG antitermination factor [Actinomyces oris K20]
Length = 281
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 29/202 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G +K R P
Sbjct: 80 QWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 139
Query: 63 GYVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------- 110
GYV ++ + D KV+ TIKDTP V GF+G NP P+T E +
Sbjct: 140 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTPEELAAK 199
Query: 111 ----------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
+ A V V FEVGE V V+DGPF S + + E ++
Sbjct: 200 EAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATIAEIHPETQKLQ 259
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + +FGR TP EL++ QV KI
Sbjct: 260 VLISLFGRDTPAELSFTQVAKI 281
>gi|254412797|ref|ZP_05026570.1| transcription termination/antitermination factor NusG [Microcoleus
chthonoplastes PCC 7420]
gi|196180532|gb|EDX75523.1| transcription termination/antitermination factor NusG [Microcoleus
chthonoplastes PCC 7420]
Length = 205
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
+ RWY VQV S CEK+ ++ R+ + + + IP V +RK G + +SE +
Sbjct: 20 SARWYAVQVASGCEKRVKTNLEQRVQTLDVADRILRVQIPQTPTVKIRKDGSRQHSEEKV 79
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ VM D+ + +K+TP VI F+G + P P++ E+E I
Sbjct: 80 FPGYVLVEMVMDDESWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSPGEVERIFKH 139
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E Q PV V VG+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 140 TEE--QEPVIKVDMAVGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 197
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 198 FNQVEK 203
>gi|51473334|ref|YP_067091.1| transcription antitermination protein NusG [Rickettsia typhi str.
Wilmington]
gi|81692319|sp|Q68XN3|NUSG_RICTY RecName: Full=Transcription antitermination protein nusG
gi|51459646|gb|AAU03609.1| transcription antitermination protein NusG (N utilization substance
protein G) [Rickettsia typhi str. Wilmington]
Length = 192
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 110/173 (63%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V S EK+ E I ++++ + +I IP V V++G+ V E++ P
Sbjct: 18 KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S
Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKL 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V+DGPF +F G V+ +D+E++R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEVVTVTDGPFETFMGTVEEIDKERNRLKVSVSIFGKATPIELNFNQVKK 190
>gi|227874727|ref|ZP_03992882.1| transcription antitermination protein nusG [Mobiluncus mulieris
ATCC 35243]
gi|306818026|ref|ZP_07451759.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris ATCC 35239]
gi|227844693|gb|EEJ54847.1| transcription antitermination protein nusG [Mobiluncus mulieris
ATCC 35243]
gi|304649207|gb|EFM46499.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris ATCC 35239]
Length = 280
Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P
Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++ A + +
Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209
Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FEVG+ V ++ GPF + + + + S++ V V IF R TPV
Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269
Query: 167 ELAYNQVEKIV 177
EL ++QVEKI+
Sbjct: 270 ELNFDQVEKIL 280
>gi|307701857|ref|ZP_07638870.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris FB024-16]
gi|307612972|gb|EFN92228.1| transcription termination/antitermination factor NusG [Mobiluncus
mulieris FB024-16]
Length = 280
Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P
Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++ A + +
Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209
Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
FEVG+ V ++ GPF + + + + S++ V V IF R TPV
Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269
Query: 167 ELAYNQVEKIV 177
EL ++QVEKI+
Sbjct: 270 ELNFDQVEKIL 280
>gi|237734019|ref|ZP_04564500.1| transcription antitermination protein nusG [Mollicutes bacterium
D7]
gi|229382845|gb|EEO32936.1| transcription antitermination protein nusG [Coprobacillus sp. D7]
Length = 182
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+N + FP
Sbjct: 6 RQWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++T V GF+G+ G P P+ SE++ I+ ++ +
Sbjct: 66 GYVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKMGLSTSS--I 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + G+ V V GPFA +G V+++D EK V V G +TP+E+ Q+EK
Sbjct: 124 EVDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 179
>gi|110589446|gb|ABG77232.1| transcription antitermination protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 179
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
+ S+ R++R G++ E+ +P+E VV +R G++ SER+FFPGYVL++ M
Sbjct: 13 PGSNAQVQRSLKERVARFGMEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEM 72
Query: 72 TDKVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
TD+ +H +KD PKV+GF+G P+TD E + I+ +V+ V++P V FE GE V
Sbjct: 73 TDETWHLVKDVPKVLGFIGGYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVV 132
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V DGPF F+G+V+ VD EKSR+ V V+IFGR TPV+L + QVEK
Sbjct: 133 RVVDGPFNDFSGVVEEVDYEKSRLKVSVLIFGRSTPVDLEFGQVEK 178
>gi|294787327|ref|ZP_06752580.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens F0305]
gi|315227113|ref|ZP_07868900.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens DSM 10105]
gi|294484683|gb|EFG32318.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens F0305]
gi|315119563|gb|EFT82696.1| transcription termination/antitermination factor NusG
[Parascardovia denticolens DSM 10105]
Length = 305
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS EK+ ++ R+ GL+ V ++ IP E V + K R PGY
Sbjct: 121 WYVLHTYSGYEKRVKTNVESRVQNFGLEDKVFQVEIPMEEVEKHTEKGKKIITRVRIPGY 180
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------EA 112
VLI+ D I++T V GF+GT P++ E+ +M +
Sbjct: 181 VLIRMWDDDDARRIIRETEGVTGFVGTNREAVPLSRQEVVDMMAPMIRSQALKEAGDQPK 240
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A ++ V F +GE V V+DGPFA+ G+V ++ E ++ V V IFGR TPVEL ++Q
Sbjct: 241 AARQRKVEVVFSLGETVTVTDGPFATMTGVVSDLQPEAQKLTVLVNIFGRDTPVELGFSQ 300
Query: 173 VEKIV 177
VEKI+
Sbjct: 301 VEKII 305
>gi|220913452|ref|YP_002488761.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6]
gi|219860330|gb|ACL40672.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6]
Length = 267
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY
Sbjct: 85 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 144
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV------ 118
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 145 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 204
Query: 119 -----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV
Sbjct: 205 QHQAPVDVDFEVGESVIVKEGPFETLPATISEIKVESQTLVVLVSIFERETPVTLAFNQV 264
Query: 174 EKI 176
KI
Sbjct: 265 TKI 267
>gi|282857085|ref|ZP_06266331.1| transcription termination/antitermination factor NusG
[Pyramidobacter piscolens W5455]
gi|282585020|gb|EFB90342.1| transcription termination/antitermination factor NusG
[Pyramidobacter piscolens W5455]
Length = 181
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ VQ YS E K ++ R++ G+++ + + +P+E V V+ G+ + FP
Sbjct: 6 HEWFTVQTYSGYENKVKANLDQRIASMGMENKIFRVLVPTEERVVVKDGKSRRISHKLFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ +M ++ ++ ++ TP V GF+G G +P P+TDSEI+ I+ ++ P V
Sbjct: 66 SYVLVEMIMDEQSWYVVRHTPGVTGFIGAGNHPLPITDSEIDEILVKIGEKEAAPAPKVE 125
Query: 123 F--EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+RV V+ GP G V + K +V +FG T +E+ Y ++EK+
Sbjct: 126 IDCEIGDRVRVATGPLTGMEGPVTEISPGKGKVKFSANVFGHDTEIEMDYAELEKL 181
>gi|291541516|emb|CBL14626.1| transcription antitermination protein nusG [Ruminococcus bromii
L2-63]
Length = 175
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+V YS E K + L ++ ++ +P E V + E + F
Sbjct: 5 EARWYVVHTYSGYENKVATDLMTTAENRNLQDMIIDVKVPVEIVTETVGDKTKEVENKLF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV +K V TD+ ++ +++ GF+G G P P+TD+E+ + V+ +
Sbjct: 65 PGYVFVKMVYTDETWYVVRNIRGCTGFVGPGSKPVPLTDAEVYRM------GVETRSVKL 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V + DGP F G+V+ +D +K V V V +FGR TPVEL Q E I
Sbjct: 119 NYSVGDSVRIIDGPLEDFVGVVEEIDADKDYVRVVVSMFGRETPVELELAQAEPI 173
>gi|238922785|ref|YP_002936298.1| transcription antitermination protein NusG [Eubacterium rectale
ATCC 33656]
gi|238874457|gb|ACR74164.1| transcription antitermination protein NusG [Eubacterium rectale
ATCC 33656]
gi|291523705|emb|CBK89292.1| transcription antitermination protein nusG [Eubacterium rectale DSM
17629]
gi|291528833|emb|CBK94419.1| transcription antitermination protein nusG [Eubacterium rectale
M104/1]
Length = 172
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K +I + L+ + E+ +P E V V+ G + ++ F
Sbjct: 3 EANWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVTEVKNGVRKQVSKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI +M D ++ +++T V GF+G G P P+T++E+ + + E V V
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPLGIKTENVV------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+ + V G + G++ ++ K V + V +FGR TPVE+++ V+K
Sbjct: 117 DFAEGDMIVVIGGVWKDTVGVITAMNYHKQTVTINVELFGRETPVEVSFADVKK 170
>gi|222823474|ref|YP_002575048.1| transcription antitermination protein NusG [Campylobacter lari
RM2100]
gi|222538696|gb|ACM63797.1| transcription antitermination protein NusG [Campylobacter lari
RM2100]
Length = 176
Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + G+ + E+ +P+E V+ + G++ SER
Sbjct: 1 MNHKWYAIQTYAGSEMAVKRAIENLVRDHGIQEQLLEVIVPTEDVIEFKNGKEKISERSL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ GYV ++ +++H I+ PKV F+G + P+P+++ +I I+ +V+ P
Sbjct: 61 YSGYVFANIDLSTELWHKIQSLPKVGRFIGESKKPTPLSEKDINLILEKVKNKAA-PKPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ F+ E V +++GPFA+F GIV+ D + + + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 ISFDKEESVRITEGPFANFVGIVEEYDMVRGVLKLNVSIFGRSTPVEILYSQVEKIV 176
>gi|189345740|ref|YP_001942269.1| NusG antitermination factor [Chlorobium limicola DSM 245]
gi|189339887|gb|ACD89290.1| NusG antitermination factor [Chlorobium limicola DSM 245]
Length = 191
Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 106/174 (60%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E I + R GL+ + ++ +P ER V V+ G+K + + FP
Sbjct: 16 PRWYALRIYSGHERKVKEGIDAEVLRCGLEDKILQVYVPYERFVEVKNGKKRSLTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V
Sbjct: 76 GYVLIEAVLDKQTRNLILDIPSVMGFLGVDDNPTPLRPEEVEKILVPDNAVEHRSVIEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 FRVGDSVKVVDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|167764384|ref|ZP_02436509.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC
43183]
gi|167697789|gb|EDS14368.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC
43183]
Length = 190
Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 14 IEKKWYVLRAISGKETKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSY 73
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+
Sbjct: 74 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEEL 133
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 134 NIPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 189
>gi|116493232|ref|YP_804967.1| transcription antitermination protein nusG [Pediococcus pentosaceus
ATCC 25745]
gi|116103382|gb|ABJ68525.1| transcription antitermination protein nusG [Pediococcus pentosaceus
ATCC 25745]
Length = 181
Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K ++ R G+ + + +P E V + G ++ F
Sbjct: 5 EKNWYVLHTYSGYENKVKNNLDSRAKSMGMAEYIFRVVVPEEEEVETKNGEDKIVKKNEF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD ++ +++TP V GF+ G+G P+P+ E+E I+ ++ +
Sbjct: 65 PGYVLVEMIMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPDEVERILRRLGMTARHA- 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVGE V + DG F G + VD +V V + +FGR T EL Q++KI
Sbjct: 124 -DIEVEVGELVKIVDGAFEGLTGKITEVDNNNMKVKVNIDMFGRETSTELDIEQIDKI 180
>gi|29348148|ref|NP_811651.1| transcription anti-termination protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|153805945|ref|ZP_01958613.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185]
gi|160883078|ref|ZP_02064081.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483]
gi|237717387|ref|ZP_04547868.1| transcription anti-termination protein [Bacteroides sp. D1]
gi|237718755|ref|ZP_04549236.1| transcription anti-termination protein [Bacteroides sp. 2_2_4]
gi|253569578|ref|ZP_04846988.1| transcription anti-termination protein [Bacteroides sp. 1_1_6]
gi|260175404|ref|ZP_05761816.1| transcription anti-termination protein [Bacteroides sp. D2]
gi|262406152|ref|ZP_06082702.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_22]
gi|293372131|ref|ZP_06618522.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|298386169|ref|ZP_06995726.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 1_1_14]
gi|298483052|ref|ZP_07001233.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D22]
gi|299144635|ref|ZP_07037703.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_23]
gi|315923634|ref|ZP_07919874.1| transcription anti-termination protein [Bacteroides sp. D2]
gi|29340051|gb|AAO77845.1| transcription anti-termination protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|149130622|gb|EDM21828.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185]
gi|156111550|gb|EDO13295.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483]
gi|229443370|gb|EEO49161.1| transcription anti-termination protein [Bacteroides sp. D1]
gi|229451887|gb|EEO57678.1| transcription anti-termination protein [Bacteroides sp. 2_2_4]
gi|251841597|gb|EES69678.1| transcription anti-termination protein [Bacteroides sp. 1_1_6]
gi|262357027|gb|EEZ06117.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_22]
gi|292632923|gb|EFF51510.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|295085440|emb|CBK66963.1| transcription antitermination protein nusG [Bacteroides
xylanisolvens XB1A]
gi|298261397|gb|EFI04264.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 1_1_14]
gi|298270796|gb|EFI12376.1| transcription termination/antitermination factor NusG [Bacteroides
sp. D22]
gi|298515126|gb|EFI39007.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_23]
gi|313697509|gb|EFS34344.1| transcription anti-termination protein [Bacteroides sp. D2]
Length = 180
Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + L S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NIPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|154486659|ref|ZP_02028066.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis
L2-32]
gi|154084522|gb|EDN83567.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis
L2-32]
Length = 274
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ G++ + ++ +P E V + K R PG
Sbjct: 89 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVRVPG 148
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + + +++T V GF+G ++P+P+T E+ +M +
Sbjct: 149 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDKP 208
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + G++V V+DGPF + +V VD ++ V V IFGR TPVEL +N
Sbjct: 209 AAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGFN 268
Query: 172 QVEKI 176
QVEK+
Sbjct: 269 QVEKL 273
>gi|223936440|ref|ZP_03628352.1| NusG antitermination factor [bacterium Ellin514]
gi|223894958|gb|EEF61407.1| NusG antitermination factor [bacterium Ellin514]
Length = 182
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +W+++ S E+K ESI R+ ++ + E+ +P E+VV VR +K S R+
Sbjct: 1 MRSQWFVIHTLSGQEQKVKESIEKRIKAEEMEEYIKEVLVPMEKVVEVRNQKKTVSTRKL 60
Query: 61 FPGYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
+PGYV + + D+ ++ IK+T VIGF+G GE P+P E+E I +Q+ +
Sbjct: 61 WPGYVFVDMALLDENKRIIEKPWYFIKETQGVIGFVG-GEPPTPTPADEVESIKSQISDS 119
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+R V FEVGE V +++GPF +F+G+++ ++ E+ ++ V V IFGR TPVEL Y QV
Sbjct: 120 EEREKPKVNFEVGETVKINNGPFLNFSGVIEEIEPERGKLKVTVNIFGRNTPVELEYWQV 179
Query: 174 EK 175
EK
Sbjct: 180 EK 181
>gi|198277431|ref|ZP_03209962.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135]
gi|198269929|gb|EDY94199.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135]
Length = 180
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 108/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + L V+++ IP+E+ VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAVSGKENKVKEYLDADIKHGNLGDYVSQVLIPTEKTYQVRNGKKIVKERTY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
PGYVL++A + +V H +++TP VIGFLG ++P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGLDHPVPLRQSEVNRILGTVDELQESGEDL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V VS GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 124 NIPYTVGETVKVSVGPFSGFSGLIEEVNAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|260585128|ref|ZP_05852869.1| transcription termination/antitermination factor NusG
[Granulicatella elegans ATCC 700633]
gi|260157216|gb|EEW92291.1| transcription termination/antitermination factor NusG
[Granulicatella elegans ATCC 700633]
Length = 184
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 104/177 (58%), Gaps = 4/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K +I R+S G++ + + +P E V V+ G++ + + F
Sbjct: 5 AKEWYVLHTYSGYENKVKSNIELRISSMGMEENIFRVIVPEEEEVEVKDGKEKVTINKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +M+D+ ++ +++TP V GF+G+ G PSP+ E++ ++ ++ PV
Sbjct: 65 PGYVLVEMIMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVDTLLGRLGVPTHAPV 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +VG+ V +++G F +G V +D+EK +V V + +FGR T EL + QV++
Sbjct: 125 -DLHAKVGDYVIITEGAFDGMSGKVTEIDDEKQKVKVTIEMFGRETIAELEFYQVKE 180
>gi|163787866|ref|ZP_02182313.1| elongation factor Tu [Flavobacteriales bacterium ALC-1]
gi|159877754|gb|EDP71811.1| elongation factor Tu [Flavobacteriales bacterium ALC-1]
Length = 181
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 70/179 (39%), Positives = 112/179 (62%), Gaps = 4/179 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V+ S E K I +SR GL+ V ++ +P+E+V+ +R G+K+N E+ +F
Sbjct: 3 EKKWYVVRAVSGQENKIKTYIENEISRLGLEDFVDQVLVPTEKVIQIRNGKKINKEKVYF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA--AVQRP 117
PGY++I+A ++ ++ H IK VIGFLG G +P P+ SE+ ++ +V+
Sbjct: 63 PGYIMIQANLSGEIPHIIKSITNVIGFLGETKGGDPVPLRQSEVNRMLGKVDELAIEADA 122
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F GE V V DGPF F+G ++ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 123 NVAIPFTKGETVKVIDGPFNGFDGTIEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 181
>gi|330505219|ref|YP_004382088.1| transcription antitermination protein NusG [Pseudomonas mendocina
NK-01]
gi|328919505|gb|AEB60336.1| transcription antitermination protein NusG [Pseudomonas mendocina
NK-01]
Length = 159
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
IKDTP+V+GF+G T + P+P+T+ E E I+ +V + +P FE GE V V DGPFA
Sbjct: 61 IKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKPKTLFEPGEMVRVVDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 DFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 158
>gi|255692646|ref|ZP_05416321.1| transcription termination/antitermination factor NusG [Bacteroides
finegoldii DSM 17565]
gi|260621622|gb|EEX44493.1| transcription termination/antitermination factor NusG [Bacteroides
finegoldii DSM 17565]
Length = 180
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVSHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 124 NIPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|87122751|ref|ZP_01078625.1| transcription antitermination protein NusG [Marinomonas sp. MED121]
gi|86161979|gb|EAQ63270.1| transcription antitermination protein NusG [Marinomonas sp. MED121]
Length = 149
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G++ EI +P+E VV +R G+K SER+F+PGYVL++ M D +H +K T +V+GF
Sbjct: 1 MGMEDYFGEILVPTEEVVEIRDGKKRKSERKFYPGYVLVQMDMNDDSWHLVKGTSRVLGF 60
Query: 89 LG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
+G T + PSP+T+ E + I+ +V P FEVGE V V DGPFA FNG+V+ D
Sbjct: 61 IGGTADKPSPITEREADAILQRVSDRADNPRPKTLFEVGEVVRVIDGPFADFNGVVEEAD 120
Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 YDKSRIKVAVLIFGRSTPVDLEFSQVEK 148
>gi|329767076|ref|ZP_08258604.1| transcription termination/antitermination factor NusG [Gemella
haemolysans M341]
gi|328837801|gb|EGF87426.1| transcription termination/antitermination factor NusG [Gemella
haemolysans M341]
Length = 181
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRF 60
+ WY++ YS E K ++I R+ G++ + I +P E+ + G+K R+
Sbjct: 6 SKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRKT 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ +
Sbjct: 66 FPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLS---N 122
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + EVG+ V V GPF G V N+D + V + I GR T VEL +EK
Sbjct: 123 VVDIDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIEIMGRETKVELELYNIEK 180
>gi|225420372|ref|ZP_03762675.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme
DSM 15981]
gi|225040991|gb|EEG51237.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme
DSM 15981]
Length = 171
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+++P VV ++ G + ++++ F
Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T+ E++ + + E V V
Sbjct: 63 PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMKGLGFRHEDVV------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V++G + G +K +++ K V + V +FGR TPVEL + +V+K+
Sbjct: 117 DFEVGDTVVVTNGAWKDTVGAIKAINDGKKTVTINVEMFGRETPVELGFAEVKKM 171
>gi|327479312|gb|AEA82622.1| transcription antitermination protein NusG [Pseudomonas stutzeri
DSM 4166]
Length = 159
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+KDTP+V+GF+G T + P+P+TD E E I+ +V +P FE GE V V+DGPFA
Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVADGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159
>gi|149195233|ref|ZP_01872323.1| transcription antitermination protein NusG [Caminibacter
mediatlanticus TB-2]
gi|149134666|gb|EDM23152.1| transcription antitermination protein NusG [Caminibacter
mediatlanticus TB-2]
Length = 179
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY +QVYS E ++I L+ + +I +P+E V+ V+ G+K ER +PG
Sbjct: 7 KWYALQVYSGSELAVKKAIENLKKELHLEDKIGQIIVPTEEVIEVKNGKKKIFERSIYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV ++A + ++H I+ PKV F+G + P+P+ +IE I+ + + P V F
Sbjct: 67 YVFLEADLDTALWHKIQSLPKVGRFIGESKKPTPLKKEDIELILQKAKQKTA-PKPKVSF 125
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V +++GPFA+F G V++ D EK + + V IFGR TPVE+ Y +VEKIV
Sbjct: 126 EEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 179
>gi|126663347|ref|ZP_01734345.1| transcription anti-termination protein [Flavobacteria bacterium
BAL38]
gi|126625005|gb|EAZ95695.1| transcription anti-termination protein [Flavobacteria bacterium
BAL38]
Length = 183
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S E K I +R G+ ++++ +P+E+VV+VR G+K+ ++ +FPG
Sbjct: 8 KWYVVRAVSGQENKVKAYIETETARLGMADYISQVLVPTEKVVTVRDGKKIAKDKVYFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVSS 120
Y++I+A +T ++ H IK P VIGFLG G + P+ SE+ ++ +V+ +V+ +
Sbjct: 68 YIMIEANLTGEIPHIIKSIPGVIGFLGETKGGDAVPLRQSEVNRMLGKVDELSVKVDSVA 127
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + +GE V V DGPF FNG ++ V+EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 128 IPYNIGETVKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183
>gi|320527651|ref|ZP_08028825.1| transcription termination/antitermination factor NusG
[Solobacterium moorei F0204]
gi|320131972|gb|EFW24528.1| transcription termination/antitermination factor NusG
[Solobacterium moorei F0204]
Length = 196
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWY+V Y+ E + E++ R+ G+ + I + E + + G+ + + FP
Sbjct: 19 RWYVVNTYAGHENRVKENLEKRVETMGIQDSLFRIVVAEETETVIGKDGKPKDVKTNVFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ MTD+ ++ +++TP V GF+G+ G P PV E+E I+ ++ +
Sbjct: 79 GYLFVEMKMTDEAWYVVRNTPGVTGFIGSSGGGAKPFPVAPDEMEAILRRIGQS--DKKI 136
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ FE+G+ V + GPF+ G V +++++ +V +++FGR TP ++ Y +EK+
Sbjct: 137 SIDFEIGDTVKILAGPFSGMEGRVASLNDQTQTANVLIMLFGRETPTDINYGDLEKV 193
>gi|294644047|ref|ZP_06721824.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294810199|ref|ZP_06768866.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|292640571|gb|EFF58812.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294442611|gb|EFG11411.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 182
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + L S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 6 IEKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSY 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ +
Sbjct: 66 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEEL 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 126 NIPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 181
>gi|227505155|ref|ZP_03935204.1| transcription antitermination protein NusG [Corynebacterium
striatum ATCC 6940]
gi|227198268|gb|EEI78316.1| transcription antitermination protein NusG [Corynebacterium
striatum ATCC 6940]
Length = 281
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 21/194 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG
Sbjct: 87 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQILENKDGKKKIVKRKLLPG 146
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
YVL++ + D + +++TP V F+G N +PV ++ + EAA + S
Sbjct: 147 YVLVRMELNDAAWSVVRETPGVTSFVGNEGNATPVKIRDVAKFLMPNEAAPEAKSSAGDQ 206
Query: 120 -----------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ FEVGE V + GP AS + + +D E ++ V IFGR
Sbjct: 207 DGEQVVAMPEKAAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 266
Query: 163 VTPVELAYNQVEKI 176
TPVEL+ ++E+I
Sbjct: 267 ETPVELSPTEIERI 280
>gi|226328678|ref|ZP_03804196.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198]
gi|225201864|gb|EEG84218.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198]
Length = 147
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ E+ +P+E VV +R G++ SER+FFPGYVL++ VM D +H +++ P+V+GF+G
Sbjct: 1 MEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPGYVLVQMVMNDATWHLVRNVPRVMGFIG 60
Query: 91 -TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
T + P+P++D E++ IMN+++ +P FE GE V VSDGPFA FNG+V+ VD E
Sbjct: 61 GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVSDGPFADFNGVVEEVDYE 120
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEK 175
KSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KSRLKVSVSIFGRATPVELDFSQVEK 146
>gi|160944618|ref|ZP_02091845.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii
M21/2]
gi|158443802|gb|EDP20806.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii
M21/2]
gi|295104378|emb|CBL01922.1| transcription antitermination protein nusG [Faecalibacterium
prausnitzii SL3/3]
Length = 183
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY+V YS E K + + L L+ +I +P E V + + G++ E + FPG
Sbjct: 16 WYVVHTYSGYENKVANDLQTMVENRHLQELICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K VM D ++ +++T GF+G P P+T E+E + + SV F
Sbjct: 76 YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM-----GVEKAAPLSVDF 130
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE
Sbjct: 131 AVGDTVQITAGPLEGFMGLVEAIDTENFKVKLKVNMFGRETPAEVEIGQVE 181
>gi|90581318|ref|ZP_01237115.1| transcription antitermination protein NusG [Vibrio angustum S14]
gi|90437557|gb|EAS62751.1| transcription antitermination protein NusG [Vibrio angustum S14]
Length = 150
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 72/148 (48%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G++ E+ +P+E VV VR G++ SER+FFPGYVL++ VM D+ +H ++ P+V+GF
Sbjct: 2 HGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQMVMNDETWHLVRSIPRVMGF 61
Query: 89 LG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
+G T + P+P++D E + I+N+++ A + PV FE GE V V+DGPFA FNG +++VD
Sbjct: 62 IGGTSDRPAPISDKEADAILNRLQQASESPVHKTVFEPGEVVRVTDGPFADFNGTIESVD 121
Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+KSRV V V IFGR TPVEL + Q+EK
Sbjct: 122 YDKSRVKVSVSIFGRATPVELEFGQIEK 149
>gi|167768207|ref|ZP_02440260.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1]
gi|317499074|ref|ZP_07957354.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167709731|gb|EDS20310.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1]
gi|291560226|emb|CBL39026.1| transcription antitermination protein nusG [butyrate-producing
bacterium SSC/2]
gi|316893650|gb|EFV15852.1| transcription termination/antitermination factor NusG
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 181
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+ +P E VV +R G K R+ F
Sbjct: 3 EANWYVVHTYSGYENKVKVDIEKTIENRKLQDEILEVRVPLEDVVEMRNGVKKQVSRKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE----HIMNQVEAAVQRP 117
PGYVLI +M D ++ +++T V GF+G G P P+T +E++ I + + R
Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGIQIGGEQQETPARE 122
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG+ + V+ G + V ++E K V +EV +FGR T VE+ + ++K
Sbjct: 123 KIELDIEVGDMIVVTSGAWEGTTSAVTAINESKQTVTIEVEMFGRATSVEIDFLDIKK 180
>gi|225017232|ref|ZP_03706424.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum
DSM 5476]
gi|224950007|gb|EEG31216.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum
DSM 5476]
Length = 174
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY+V YS E K ++I + L L+ E+ IP+E VV ++ + ER+ F
Sbjct: 4 TAKWYVVHTYSGYENKVAQNIEKAVESRQLHDLIQEVKIPTETVVEIKDNKTREVERKLF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K ++TD ++ +++ V GF+G P P+T E+E + V+ V
Sbjct: 64 PSYVLVKMIITDDTWYVVRNIRGVTGFVGPTSKPIPLTKKEVEAL------GVEDKKVEV 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+++G+ V + DG F GIV+ +D + + V V V +FGR TPVEL QV
Sbjct: 118 DYQIGDSVKIVDGSLEGFIGIVQELDVDNNMVKVTVSMFGRETPVELELTQV 169
>gi|107103787|ref|ZP_01367705.1| hypothetical protein PaerPA_01004858 [Pseudomonas aeruginosa PACS2]
gi|313111429|ref|ZP_07797233.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
39016]
gi|310883735|gb|EFQ42329.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
39016]
Length = 159
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/159 (47%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+KDTP+V+GF+G T + P+P+TD E + I+ +V + +P FE GE V V DGPFA
Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKPKTLFEPGETVRVIDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159
>gi|315651271|ref|ZP_07904300.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Eubacterium saburreum DSM 3986]
gi|315486475|gb|EFU76828.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Eubacterium saburreum DSM 3986]
Length = 177
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 94/175 (53%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+W++ YS E K I + GL + E+T+P E ++ V+ G + +S+++ F
Sbjct: 3 EAQWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI M D+ ++ +++T V GF+G G P P+T+ E+ + A V
Sbjct: 63 PGYVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTEDELVALGYSGNATKPEARLEV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V G + G++ V+E++ V + V +FGR T VEL + +V K+
Sbjct: 123 DLKVGDMVSVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVRKV 177
>gi|302337466|ref|YP_003802672.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
gi|301634651|gb|ADK80078.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
Length = 184
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ YS E K + + +T++ +PSE VV V+ G+K + R+F
Sbjct: 1 MAKGWYVLHTYSGYENKIERFLRKMMGDGDFGDALTDVKVPSEEVVEVKDGKKKVTNRKF 60
Query: 61 FPGYVLIKAVMTDKVY----HTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-- 112
PGY+L++ + D+ + IK V GF+G G P P++ E + I+ +
Sbjct: 61 LPGYILLEMDLPDRGWKAVCSQIKKIQGVTGFVGAPVGAKPQPISSDEAKAILQKSGEIK 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A + F VGE V + DGPF +F G ++ V+ EK ++ V V IFGR TPVE+ + Q
Sbjct: 121 ADRTVRPRQSFSVGEVVRIVDGPFDTFTGNIEEVNLEKGKLRVMVGIFGRSTPVEVDFLQ 180
Query: 173 VEKI 176
VEKI
Sbjct: 181 VEKI 184
>gi|262163615|ref|ZP_06031358.1| transcription antitermination protein NusG [Vibrio mimicus VM223]
gi|262027982|gb|EEY46644.1| transcription antitermination protein NusG [Vibrio mimicus VM223]
Length = 148
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ L E+ +P+E VV +R G++ SER+FFPGYVL++ +M D+ +H ++ P+V+GF+G
Sbjct: 1 MEELFGEVLVPTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIG 60
Query: 91 -TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
T + P+P+TD E + I+N++E A + P FE GE V V+DGPFA FNG V+ VD E
Sbjct: 61 GTSDRPAPITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYE 120
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
KSR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 KSRLKVSVSIFGRATPVELEFGQVEKL 147
>gi|119025264|ref|YP_909109.1| transcription antitermination protein nusG [Bifidobacterium
adolescentis ATCC 15703]
gi|118764848|dbj|BAF39027.1| transcription antitermination protein nusG [Bifidobacterium
adolescentis ATCC 15703]
Length = 274
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ G++ + ++ +P E V + K R PG
Sbjct: 89 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVRVPG 148
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + + +++T V GF+G ++P+P+T E+ +M +
Sbjct: 149 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDKP 208
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + G++V V+DGPF + +V VD ++ V V IFGR TPVEL +N
Sbjct: 209 AAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGFN 268
Query: 172 QVEKI 176
QVEK+
Sbjct: 269 QVEKL 273
>gi|319937663|ref|ZP_08012066.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1]
gi|319807098|gb|EFW03712.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1]
Length = 185
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K E++ R+ GL + I IP ++ G+K+N + FP
Sbjct: 9 RRWYVVNTYSGHENKVKENLEKRVESMGLQDCLFNIVIPEHVETEIKDGKKINKTKNMFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++T V GF+G+ G P P+ EI+ I+ ++ +Q
Sbjct: 69 GYVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKHEIDPILKRM--GIQTTQL 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ V V GPFA G V+++D EK V V G TP+E+ Q+EK+
Sbjct: 127 EINYAEGDEVKVLSGPFAGKQGKVESIDREKEVATVLVDFLGNATPMEVELIQLEKV 183
>gi|241889605|ref|ZP_04776903.1| transcription termination/antitermination factor NusG [Gemella
haemolysans ATCC 10379]
gi|241863227|gb|EER67611.1| transcription termination/antitermination factor NusG [Gemella
haemolysans ATCC 10379]
Length = 181
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRF 60
+ WY++ YS E K ++I R+ G++ + I +P E+ + G+K R+
Sbjct: 6 SKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRKT 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ +
Sbjct: 66 FPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLS---N 122
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + EVG+ V V GPF G V N+D + V + + GR T VEL +EK
Sbjct: 123 VVDIDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIELMGRETKVELELYNIEK 180
>gi|323141142|ref|ZP_08076045.1| transcription termination/antitermination factor NusG
[Phascolarctobacterium sp. YIT 12067]
gi|322414408|gb|EFY05224.1| transcription termination/antitermination factor NusG
[Phascolarctobacterium sp. YIT 12067]
Length = 186
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 104/178 (58%), Gaps = 4/178 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY++ YS E K ++ ++ G+++ + I IP+E+ V + G+K E + F
Sbjct: 8 KHWYVIHTYSGYENKVRANLERKVHSLGMENEIFRIEIPTEKEVEITSDGKKKVVEHKVF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++ ++ ++ ++ +++T V GF+G+ +P+P+T E+ IM + V+ V
Sbjct: 68 PGYVLVEMIVNERNWYAVRNTAGVTGFVGSDSTHPTPLTAEEVRQIMPSMGMEVEETVKP 127
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F++ +RV + PF F G + ++EEK ++ V V I GR TPVE+ + QVE+I
Sbjct: 128 AKIDFQLHQRVRIKTAPFMDFEGTISEINEEKGKLKVLVDIMGRETPVEIDFTQVEEI 185
>gi|68536954|ref|YP_251659.1| transcription antitermination protein NusG [Corynebacterium
jeikeium K411]
gi|68264553|emb|CAI38041.1| transcription antitermination protein [Corynebacterium jeikeium
K411]
Length = 316
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E VV +R G++ +R+ PGY
Sbjct: 117 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 176
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQ- 115
VL++ + D + ++DTP V F+G P+PV E+ + + E +
Sbjct: 177 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 236
Query: 116 ------------------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V +E GE V + GPFAS + + +D E +R+ V
Sbjct: 237 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 296
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 297 SIFGRETPVELEFDQVEKL 315
>gi|218246573|ref|YP_002371944.1| transcription antitermination protein NusG [Cyanothece sp. PCC
8801]
gi|257059613|ref|YP_003137501.1| transcription antitermination protein NusG [Cyanothece sp. PCC
8802]
gi|218167051|gb|ACK65788.1| NusG antitermination factor [Cyanothece sp. PCC 8801]
gi|256589779|gb|ACV00666.1| NusG antitermination factor [Cyanothece sp. PCC 8802]
Length = 208
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 14/187 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
T RWY VQV S CEK+ ++ R+ + + ++ IP + VRK G + + E +
Sbjct: 23 TARWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPKTPTIKVRKDGSRQHGEEKV 82
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
FPGYVL++ +M D + +K+TP VI F+G + P P++ EIE I Q
Sbjct: 83 FPGYVLVRMIMDDDAWQVVKNTPHVINFVGAEQSRGTGRGRGHVRPVPLSPGEIERIFKQ 142
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E VQ PV + VG+++ V GPF F G V V E+ ++ + IFGR TPVEL
Sbjct: 143 SE--VQEPVVKIDTMVGDKIMVLSGPFKDFEGEVVEVSPERGKLRALLSIFGRDTPVELE 200
Query: 170 YNQVEKI 176
+NQ+EK+
Sbjct: 201 FNQIEKL 207
>gi|311739242|ref|ZP_07713079.1| transcription antitermination protein NusG [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305668|gb|EFQ81734.1| transcription antitermination protein NusG [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 306
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+V+ + G+K +R+ PG
Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230
Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + + FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 231 AEGEQVVAMPEKEEAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 291 RETPVELSPTEIERI 305
>gi|126659912|ref|ZP_01731036.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110]
gi|126618776|gb|EAZ89521.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110]
Length = 206
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + +I IP V VRK G + E +
Sbjct: 21 AARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKV 80
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
FPGYVL+K +M D + +K+TP VI F+G+ + P P++ SE+E I Q
Sbjct: 81 FPGYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQ 140
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E PV + E+G+++ V GPF F G V V E++++ + IFGR TPVEL
Sbjct: 141 AEQPE--PVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELE 198
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 199 FNQVEK 204
>gi|21672991|ref|NP_661056.1| transcription antitermination protein NusG [Chlorobium tepidum TLS]
gi|21646053|gb|AAM71398.1| transcription antitermination protein NusG [Chlorobium tepidum TLS]
Length = 191
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 72/172 (41%), Positives = 104/172 (60%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++YS E+K ESI + R GL + ++ IP ER V V+ G+K + + FPGY
Sbjct: 18 WYALRIYSGHERKVKESIEMEVERCGLSESIKQVYIPYERFVEVKNGKKRSLTKNAFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLI+AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V F+
Sbjct: 78 VLIEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPGGAIEHRAVVEAPFK 137
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF+S GIV V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 138 VGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKPV 189
>gi|260579298|ref|ZP_05847181.1| transcription antitermination protein [Corynebacterium jeikeium
ATCC 43734]
gi|258602597|gb|EEW15891.1| transcription antitermination protein [Corynebacterium jeikeium
ATCC 43734]
Length = 322
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 27/199 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R G+D + E+ +P E VV +R G++ +R+ PGY
Sbjct: 123 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 182
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQ- 115
VL++ + D + ++DTP V F+G P+PV E+ + + E +
Sbjct: 183 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 242
Query: 116 ------------------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V +E GE V + GPFAS + + +D E +R+ V
Sbjct: 243 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 302
Query: 158 VIFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEK+
Sbjct: 303 SIFGRETPVELEFDQVEKL 321
>gi|297243309|ref|ZP_06927243.1| transcription antitermination protein [Gardnerella vaginalis AMD]
gi|296888716|gb|EFH27454.1| transcription antitermination protein [Gardnerella vaginalis AMD]
Length = 300
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R+ GL+ + +I +P E V + K R PG
Sbjct: 115 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 174
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G P+P++ E+ +M +
Sbjct: 175 YVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDKP 234
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V ++VG++V V+DGPF++ +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 235 AAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGFN 294
Query: 172 QVEKIV 177
QVE IV
Sbjct: 295 QVEPIV 300
>gi|212213263|ref|YP_002304199.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212]
gi|212218059|ref|YP_002304846.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154]
gi|215918918|ref|NP_819269.2| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 493]
gi|206583803|gb|AAO89783.2| transcription antitermination protein [Coxiella burnetii RSA 493]
gi|212011673|gb|ACJ19054.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212]
gi|212012321|gb|ACJ19701.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154]
Length = 188
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFP
Sbjct: 21 KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V
Sbjct: 81 GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 135 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187
>gi|171914826|ref|ZP_02930296.1| Transcription antiterminator [Verrucomicrobium spinosum DSM 4136]
Length = 189
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ V + E++ E++ R+ + V E+ +P+ERV V+KG++ S R+ FPG
Sbjct: 10 QWYVLHVRAGLEQRVRENMERRIQSEEMGEFVFEVVVPTERVSEVKKGKRSESTRKVFPG 69
Query: 64 YVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
Y+L + D+ +H +K+T + F GT ++P P+ E+E ++ QV +
Sbjct: 70 YILANMWLLDENNKPVVQTWHFVKETDGFLNFAGTKDHPIPLRPKEVEVLLAQVREREEG 129
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VG+ V V+DGPF S GI++ +D EK + V V IFGR TPV+L Y QVEK
Sbjct: 130 VKPKFMFSVGDTVRVADGPFESQTGIIEEIDPEKGLLRVSVNIFGRSTPVDLEYWQVEK 188
>gi|291544032|emb|CBL17141.1| transcription antitermination protein nusG [Ruminococcus sp. 18P13]
Length = 175
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY++ YS E K + I + L L+ E+ +P+E+V + G+ ER+ +
Sbjct: 4 AAKWYVIHTYSGYENKVAQDIEKVVENRKLHDLILEVKVPTEKVTEITDGKTKEVERKTY 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K V TD ++ +++T V GF+G P+P+T+ E+ + + + VQ V
Sbjct: 64 PGYVLLKMVYTDDSWYVVRNTRGVTGFVGPASEPTPLTEKEVAALGVETGSTVQ-----V 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V VS F GIV++++ E V V + +FGR TP LA NQV K+
Sbjct: 119 NFAVGDSVKVSGTAMDGFVGIVQSINLEDQTVDVMISMFGRETPATLALNQVIKL 173
>gi|225376339|ref|ZP_03753560.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM
16841]
gi|225211715|gb|EEG94069.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM
16841]
Length = 178
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 6/173 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K +I + L+ + E+ +P + VV ++ G ++ F
Sbjct: 9 EAHWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGANKTVSKKMF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+TD E++ + ++ V
Sbjct: 69 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMKPL------GIKTENVEV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F G+ V V G + G++++++ K V + V +FGR TPVE+++ ++
Sbjct: 123 DFAEGDTVTVIGGVWKDTVGVIQSMNHSKQIVTINVELFGRETPVEISFADIK 175
>gi|57242443|ref|ZP_00370381.1| transcription termination/antitermination factor NusG
[Campylobacter upsaliensis RM3195]
gi|315639013|ref|ZP_07894183.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Campylobacter upsaliensis JV21]
gi|57016728|gb|EAL53511.1| transcription termination/antitermination factor NusG
[Campylobacter upsaliensis RM3195]
gi|315480925|gb|EFU71559.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Campylobacter upsaliensis JV21]
Length = 177
Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY +Q Y+ E +I + + ++ + EI +P+E V+ + G++ SER +
Sbjct: 3 EHKWYAIQTYAGSEMAVKRAIENLVKDNKIEERLKEIVVPTEDVIEFKNGKEKISERSLY 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + +++H I+ PKV F+G +NP+P+++ +I I+ + P +
Sbjct: 63 SGYVFANLNLDTELWHRIQSLPKVGRFIGESKNPTPLSEKDINLILEKAYNKAA-PKPKI 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V +++GPFA+F GIV+ D + + + V IFGR TPVE+ Y+QVEK++
Sbjct: 122 SFEEGENVRITEGPFANFTGIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKVI 177
>gi|170017874|ref|YP_001728793.1| transcription termination/antitermination factor NusG [Leuconostoc
citreum KM20]
gi|169804731|gb|ACA83349.1| Transcription termination/antitermination factor NusG [Leuconostoc
citreum KM20]
Length = 211
Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 10/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ W++V YS E K ++ R G+ + I +P + V +++ G S
Sbjct: 24 IEKSWFVVHTYSGYEHKVKANLESRTQTMGMSQQIFRILVPEQEVTTIQDGEAKTSVEND 83
Query: 61 FPGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVE 111
FPGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++
Sbjct: 84 FPGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMG 143
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V R V + EVG+ V + GPF+ G V +D EK + V +FGR TP EL +
Sbjct: 144 M-VTREVVDLDVEVGQVVKIIAGPFSGMEGTVTAIDSEKQTLEATVEVFGRETPTELDFA 202
Query: 172 QVEKIV 177
V+ ++
Sbjct: 203 DVDTVL 208
>gi|199598558|ref|ZP_03211975.1| Transcription antiterminator [Lactobacillus rhamnosus HN001]
gi|229552909|ref|ZP_04441634.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus
LMS2-1]
gi|258509294|ref|YP_003172045.1| transcription antitermination protein NusG [Lactobacillus rhamnosus
GG]
gi|258540480|ref|YP_003174979.1| transcription antitermination protein nusG [Lactobacillus rhamnosus
Lc 705]
gi|199590600|gb|EDY98689.1| Transcription antiterminator [Lactobacillus rhamnosus HN001]
gi|229313717|gb|EEN79690.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus
LMS2-1]
gi|257149221|emb|CAR88194.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus
GG]
gi|257152156|emb|CAR91128.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus
Lc 705]
gi|259650575|dbj|BAI42737.1| transcription antiterminator [Lactobacillus rhamnosus GG]
Length = 184
Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E K ++ R S +D + + +P E + G++ ++ F
Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ +++ + + +
Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVASVLHSMGMSTRHQ- 127
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VGE V + DG F +G V VD++K ++ V +F R EL ++QV+K+
Sbjct: 128 -DVEFDVGEPVTIIDGAFTGMHGKVTAVDKDKMKLKVVTEMFDREVTAELDFDQVDKL 184
>gi|172035143|ref|YP_001801644.1| transcription antitermination protein NusG [Cyanothece sp. ATCC
51142]
gi|171696597|gb|ACB49578.1| transcription antitermination protein [Cyanothece sp. ATCC 51142]
Length = 214
Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + +I IP V VRK G + E +
Sbjct: 29 AARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKV 88
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
FPGYVL+K +M D + +K+TP VI F+G+ + P P++ SE+E I Q
Sbjct: 89 FPGYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQ 148
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E PV + E+G+++ V GPF F G V V E++++ + IFGR TPVEL
Sbjct: 149 AEQPE--PVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELE 206
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 207 FNQVEK 212
>gi|283783657|ref|YP_003374411.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis 409-05]
gi|298252884|ref|ZP_06976678.1| transcription antitermination protein [Gardnerella vaginalis 5-1]
gi|283441617|gb|ADB14083.1| transcription termination/antitermination factor NusG [Gardnerella
vaginalis 409-05]
gi|297533248|gb|EFH72132.1| transcription antitermination protein [Gardnerella vaginalis 5-1]
Length = 298
Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R+ GL+ + +I +P E V + K R PG
Sbjct: 113 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 172
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G P+P++ E+ +M +
Sbjct: 173 YVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDKP 232
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V ++VG++V V+DGPF++ +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 233 AAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGFN 292
Query: 172 QVEKIV 177
QVE IV
Sbjct: 293 QVEPIV 298
>gi|120436720|ref|YP_862406.1| transcription antitermination protein [Gramella forsetii KT0803]
gi|117578870|emb|CAL67339.1| transcription antitermination protein [Gramella forsetii KT0803]
Length = 185
Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V+ S E K + I + GL + ++ +P+E+V+ +R G+KVN ER +F
Sbjct: 8 EKKWYVVRAVSGQENKVKDYIEKEIEYLGLQDAIDQVLVPTEKVIQIRNGKKVNKERVYF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPV 118
PGYV+I+A + ++ H IK VIGFLG G +P P+ SE+ ++ +V+ +V+
Sbjct: 68 PGYVMIQANIGGEIPHIIKGINGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELSVKADN 127
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 128 VAIPFTIGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185
>gi|296111502|ref|YP_003621884.1| transcription antitermination protein NusG [Leuconostoc kimchii
IMSNU 11154]
gi|295833034|gb|ADG40915.1| transcription antitermination protein NusG [Leuconostoc kimchii
IMSNU 11154]
Length = 217
Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 10/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ W++V YS E K ++ R + + I +P + V +++ G S
Sbjct: 31 IEKSWFVVHTYSGYEHKVKANLESRTQTMRMTEQIFRILVPEQEVTTIQDGEAKTSVEND 90
Query: 61 FPGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVE 111
FPGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++
Sbjct: 91 FPGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRMG 150
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ R V ++ E G+ V + GPF+ G V VD EK + V +FGR TP EL +
Sbjct: 151 MST-REVVTLDVEAGQIVKIIAGPFSGMEGTVTAVDPEKQTLEATVEVFGRETPTELDFA 209
Query: 172 QVEKIV 177
V+ ++
Sbjct: 210 DVDTVL 215
>gi|116495742|ref|YP_807476.1| transcription antiterminator [Lactobacillus casei ATCC 334]
gi|227533698|ref|ZP_03963747.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239630147|ref|ZP_04673178.1| transcription antiterminator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067297|ref|YP_003789320.1| transcription antiterminator [Lactobacillus casei str. Zhang]
gi|116105892|gb|ABJ71034.1| transcription antitermination protein nusG [Lactobacillus casei
ATCC 334]
gi|227188682|gb|EEI68749.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239527759|gb|EEQ66760.1| transcription antiterminator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439704|gb|ADK19470.1| Transcription antiterminator [Lactobacillus casei str. Zhang]
gi|327383308|gb|AEA54784.1| NusG antitermination factor [Lactobacillus casei LC2W]
gi|327386491|gb|AEA57965.1| NusG antitermination factor [Lactobacillus casei BD-II]
Length = 184
Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E K ++ R S +D + + +P E + G++ ++ F
Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ ++++ + + +
Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMGMSTRHN- 127
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VGE V + DG F +G V VD+EK ++ V +F R EL ++QV+K+
Sbjct: 128 -DVEFDVGEPVTIIDGAFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184
>gi|329769657|ref|ZP_08261061.1| transcription termination/antitermination factor NusG [Gemella
sanguinis M325]
gi|328838412|gb|EGF88021.1| transcription termination/antitermination factor NusG [Gemella
sanguinis M325]
Length = 181
Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY++ YS E K +++ R+ ++ + I +P E+ + G+K R+ F
Sbjct: 7 KEWYVIHTYSGYENKVKDNLEKRVESLNMEDKIFRIVVPEEKETIITPTGKKKEVNRKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ + V
Sbjct: 67 PGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSS---V 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ E+G+ V V GPF +G V N+D + V + + GR T VEL +EK
Sbjct: 124 VDIDIELGDHVRVISGPFVDMDGKVVNIDTNNFKADVMIELMGRETKVELELYNIEK 180
>gi|237786433|ref|YP_002907138.1| transcription antitermination protein NusG [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759345|gb|ACR18595.1| transcription antitermination protein [Corynebacterium
kroppenstedtii DSM 44385]
Length = 353
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 67/198 (33%), Positives = 97/198 (48%), Gaps = 26/198 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIVQ YS E K + R G+D + E+ +P E V V+ G++ + + PGY
Sbjct: 155 WYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPGY 214
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
VL++ + D + I+DTP + F+G +P+PV E+ + E A Q+
Sbjct: 215 VLMRIELDDASWSVIRDTPGITSFVGNEGHPTPVKIREVAKFLLPPETATQKAEQEGEEP 274
Query: 117 ------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
V +EVGE V V GPFAS + + +D E S++ V
Sbjct: 275 AAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALVS 334
Query: 159 IFGRVTPVELAYNQVEKI 176
IFGR TPVEL ++QVEKI
Sbjct: 335 IFGRETPVELDFDQVEKI 352
>gi|256390118|ref|YP_003111682.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928]
gi|256356344|gb|ACU69841.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928]
Length = 262
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 102/178 (57%), Gaps = 7/178 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + +++ R++ ++ + ++ +P E VV ++ G++ +R FPGY
Sbjct: 83 WYVIHSYAGYENRVKQNLETRMTTLNMEEFIFQVEVPMEEVVEIKGGQRKRVKRNKFPGY 142
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-------AAVQRP 117
VL++ +T++ + +++TP V GF+G P P+T E+ I+ + +
Sbjct: 143 VLVRMDLTNESWGVVRNTPGVTGFVGNAHEPYPLTLDEVVKILLEEQPEEVSGKQKAPAE 202
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + FEVG+ V V DGPFA+ + ++ + +V V IFGR TPVEL++NQ++K
Sbjct: 203 VKVLDFEVGDSVTVIDGPFATLQATINEINADSQKVKGLVEIFGRETPVELSFNQIQK 260
>gi|212695317|ref|ZP_03303445.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855]
gi|237711661|ref|ZP_04542142.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA]
gi|237725897|ref|ZP_04556378.1| transcription anti-termination protein [Bacteroides sp. D4]
gi|265753081|ref|ZP_06088650.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_33FAA]
gi|212662227|gb|EEB22801.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855]
gi|229435705|gb|EEO45782.1| transcription anti-termination protein [Bacteroides dorei
5_1_36/D4]
gi|229454356|gb|EEO60077.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA]
gi|263236267|gb|EEZ21762.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_33FAA]
Length = 180
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQESGEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 124 NVPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179
>gi|261338353|ref|ZP_05966237.1| transcription termination/antitermination factor NusG
[Bifidobacterium gallicum DSM 20093]
gi|270277028|gb|EFA22882.1| transcription termination/antitermination factor NusG
[Bifidobacterium gallicum DSM 20093]
Length = 290
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 102/186 (54%), Gaps = 12/186 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ +I R++ GL+ ++ ++ +P E V + K R PG
Sbjct: 105 KWYVLHTYSGYEKRVKSNIESRVASFGLEDVIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 164
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + +++T V GF+G P+P++ E+ ++ +
Sbjct: 165 YVLIRMYPDENARRIVRETEGVTGFVGPTREPAPLSRQEVVSMLAPMIASQALKDAGDKP 224
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V F G++V V+DGPFA+ + +V +V+ +++V V IFGR TPVEL ++
Sbjct: 225 AAAKKRTIEVSFAPGDQVTVTDGPFATMSAVVSDVEPTTQKLNVLVSIFGRDTPVELGFD 284
Query: 172 QVEKIV 177
QVEK+V
Sbjct: 285 QVEKLV 290
>gi|331001619|ref|ZP_08325142.1| transcription termination/antitermination factor NusG
[Lachnospiraceae oral taxon 107 str. F0167]
gi|330413340|gb|EGG92707.1| transcription termination/antitermination factor NusG
[Lachnospiraceae oral taxon 107 str. F0167]
Length = 177
Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 95/175 (54%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+W++ YS E K I + GL + E+T+P E ++ V+ G + +S+++ F
Sbjct: 3 EAQWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI M D+ ++ +++T V GF+G G P P+T+ E+ + ++ V
Sbjct: 63 PGYVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTNDELVALGYSGDSTKPEAKLHV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V G + G++ V+E++ V + V +FGR T VEL + +V+K+
Sbjct: 123 DLKEGDMVTVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVKKM 177
>gi|160941939|ref|ZP_02089264.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC
BAA-613]
gi|158435146|gb|EDP12913.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC
BAA-613]
Length = 172
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+++P VV ++ G + ++++ F
Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T+ E+ + E V V
Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASLGFHREEDVL-----V 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V G + G +K +++ K + + V +FGR TPVEL + +V+K+
Sbjct: 118 DFEVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKKM 172
>gi|150003400|ref|YP_001298144.1| transcription anti-termination protein [Bacteroides vulgatus ATCC
8482]
gi|294777810|ref|ZP_06743254.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|319640312|ref|ZP_07995037.1| transcription antitermination protein nusG [Bacteroides sp.
3_1_40A]
gi|149931824|gb|ABR38522.1| transcription anti-termination protein [Bacteroides vulgatus ATCC
8482]
gi|294448264|gb|EFG16820.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|317388087|gb|EFV68941.1| transcription antitermination protein nusG [Bacteroides sp.
3_1_40A]
Length = 180
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEEL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 124 NVPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179
>gi|189499294|ref|YP_001958764.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
gi|189494735|gb|ACE03283.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
Length = 193
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 104/174 (59%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E I + R L+ + ++ +P E+ V VR G+K + + FP
Sbjct: 18 PRWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+A++ + + I D P V+GFLG + P+P+ E+E I+ QR V
Sbjct: 78 GYVLIEAILDKQTKNLIMDIPSVMGFLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAP 137
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ I
Sbjct: 138 FRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVKSI 191
>gi|317495156|ref|ZP_07953526.1| transcription termination/antitermination factor NusG [Gemella
moribillum M424]
gi|316914578|gb|EFV36054.1| transcription termination/antitermination factor NusG [Gemella
moribillum M424]
Length = 181
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY++ YS E K ++I R+ ++ + I +P E+ + G++ R+ F
Sbjct: 7 KEWYVIHTYSGYENKVKDNIEKRVESLNMEDKIFRIVVPEEKETIITPTGKRKEVNRKTF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD + +++TP V GF+G+ G PSP+ EI I+ Q+ + V
Sbjct: 67 PGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSS---V 123
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V EVG+ V V GPF G V N+D +V V + + GR T VEL +EK
Sbjct: 124 VDVDIEVGDHVRVISGPFVGMEGKVVNIDLNNYKVDVMIELMGRETKVELELYNIEK 180
>gi|186685895|ref|YP_001869091.1| transcription antitermination protein NusG [Nostoc punctiforme PCC
73102]
gi|186468347|gb|ACC84148.1| NusG antitermination factor [Nostoc punctiforme PCC 73102]
Length = 213
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E +
Sbjct: 28 EARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPQTPAVKIRKDGSRQHTEEKV 87
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ +M D + +++T VI F+G+ + P P++ SE+E I Q
Sbjct: 88 FPGYVLVRMMMDDDTWQVVRNTSHVINFVGSEQKRGSSKGRGHVHPIPLSSSEVERIFKQ 147
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ Q V + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 148 T--SEQEAVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 205
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 206 FNQVEK 211
>gi|194337666|ref|YP_002019460.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
gi|194310143|gb|ACF44843.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
Length = 191
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 102/174 (58%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY +++YS E+K E+I + R GL + +I +P ER V V+ G+K + + FP
Sbjct: 16 ARWYALRIYSGHERKVKEAIDADVIRCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P V+GFLG + P+P+ E+E I+ R V
Sbjct: 76 GYVLIEAVLDKQTRNLILDIPSVMGFLGVDDVPTPLRPEEVEKILEPESTIEHRSVVEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 FRIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|209364194|ref|YP_001425195.2| transcription antitermination protein [Coxiella burnetii Dugway
5J108-111]
gi|207082127|gb|ABS78422.2| transcription antitermination protein [Coxiella burnetii Dugway
5J108-111]
Length = 188
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFP
Sbjct: 21 KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 80
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V
Sbjct: 81 GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 134
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 135 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187
>gi|254881310|ref|ZP_05254020.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA]
gi|254834103|gb|EET14412.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA]
Length = 183
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 7 IEKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSY 66
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
PGYVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ +
Sbjct: 67 LPGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEEL 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK
Sbjct: 127 NVPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 182
>gi|302384847|ref|YP_003820669.1| NusG antitermination factor [Clostridium saccharolyticum WM1]
gi|302195475|gb|ADL03046.1| NusG antitermination factor [Clostridium saccharolyticum WM1]
Length = 171
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+++P E V+ ++ G + ++++ F
Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T+ E+E + + E + V
Sbjct: 63 PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMEKLGFKNEEII------V 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G+ V V+ G + G +K+++E K + + V +FGR TPVEL +++V+K+
Sbjct: 117 GFEEGDTVVVTSGAWKDTVGAIKSINEGKKTITMSVEMFGRETPVELNFSEVKKM 171
>gi|325678944|ref|ZP_08158542.1| transcription termination/antitermination factor NusG [Ruminococcus
albus 8]
gi|324109448|gb|EGC03666.1| transcription termination/antitermination factor NusG [Ruminococcus
albus 8]
Length = 175
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 4/174 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K ++I + L L+ E+ IP E V ++ + V +E++ F
Sbjct: 4 EAKWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVKIPMETVTEIKGTKTVEAEKKLF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K V+TD ++ +++T V GF+G G P P++D E+E +
Sbjct: 64 PSYVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDKEVEAL----GVDTGTQTVQT 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVG+ V + G F +G V +D E + V V +FGR T V L Q+ K
Sbjct: 120 NIEVGDDVVMVGGSFDGMSGTVTALDLENAAADVTVSMFGRETSVTLPLTQLRK 173
>gi|308178151|ref|YP_003917557.1| transcription antitermination protein NusG [Arthrobacter
arilaitensis Re117]
gi|307745614|emb|CBT76586.1| transcription antitermination protein NusG [Arthrobacter
arilaitensis Re117]
Length = 275
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ Y+ E + ++ R+ +D + +I +P E VV V+ ++ R PGY
Sbjct: 91 WFVIHTYAGYENRVKVNLETRIQTQDMDEFIFDIQVPMEEVVEVKNTQRKIVRRVRIPGY 150
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEAAVQRPVSS-- 120
VL++ +TD + ++ TP V GF+G +P+P++ E+ ++ V+ Q S
Sbjct: 151 VLVRMELTDASWGVVRHTPGVTGFVGNAHDPNPLSLDEVFSMLEHTIVDPVEQPSASKPG 210
Query: 121 --------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V FEVGE V V+DGPF + + + + +++ V V IF R TPV L +NQ
Sbjct: 211 RAPITEVTVDFEVGESVIVNDGPFETMPATISEIKLDAAQLVVLVSIFERETPVTLNFNQ 270
Query: 173 VEKI 176
V KI
Sbjct: 271 VTKI 274
>gi|237751211|ref|ZP_04581691.1| transcription antitermination protein nusG [Helicobacter bilis ATCC
43879]
gi|229372577|gb|EEO22968.1| transcription antitermination protein nusG [Helicobacter bilis ATCC
43879]
Length = 176
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q YS E+ ++I + ++ H + I +P+E V ++ +K +R
Sbjct: 1 MEFQWYAIQTYSGSEQSVKKAIENLIEQNNASHRLKNIVVPTEDVFEIKDKKKKTVQRSI 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV + + +++H I+ P+V F+G + P+P+++++I++I++++E P
Sbjct: 61 YPGYVFVYISLDTELWHMIQSLPRVGRFIGESKKPTPLSEADIQNILDKIENRPA-PRPK 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F GE V ++DGPFA+F G+V++ D + ++ + V IFGR T E+ QVEKI+
Sbjct: 120 VSFATGESVLITDGPFANFTGVVESYDIKTKKLKLNVSIFGRNTLTEINDVQVEKIL 176
>gi|325283114|ref|YP_004255655.1| NusG antitermination factor [Deinococcus proteolyticus MRP]
gi|324314923|gb|ADY26038.1| NusG antitermination factor [Deinococcus proteolyticus MRP]
Length = 189
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R + G+ + ++ PSE+ V +R G +K ER
Sbjct: 1 MSIEWYAVHTYIGQEDRVQQHLLERARKLGMLGTKIFQVLQPSEQAVELRDGGKKETVER 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + +++T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDIEDDDAPGELGESWEVVRNTNGVTGFVGTATYPVPLSPDEVQRLLASV 120
Query: 111 EAA----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
V+ P V + G+ V V GPFA FNG+V V+ +++V V V IFGR TPV
Sbjct: 121 GVGTVPKVEAPKVQVDLKPGDMVKVKSGPFADFNGVVSEVNAAQAKVKVLVSIFGRETPV 180
Query: 167 ELAYNQVEK 175
EL + QV K
Sbjct: 181 ELDFAQVSK 189
>gi|295099392|emb|CBK88481.1| transcription antitermination protein nusG [Eubacterium
cylindroides T2-87]
Length = 181
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY+V Y+ E + E++ R+ GL+ + +I + E+ + + G+ V +
Sbjct: 4 LKKEWYVVNTYAGQENRVKENLERRVKTMGLEDSLFQIVVAEEKEIEYKNGKPVEKTKNL 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
F GYVL++ +MTD+ ++ +++TP V GF+G+ G P PV+ EI+ ++ ++ Q
Sbjct: 64 FSGYVLVQMIMTDEAWYVVRNTPGVTGFIGSSGKGAKPFPVSQEEIDSVLRRL--GRQDM 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+ V + +G F + G V+ +D++K V +++FGR TP ++ Y ++K+
Sbjct: 122 SVQVDFEVGDTVEILNGAFKNSEGTVEKMDDDKKEATVLLILFGRETPTDIPYMDLKKV 180
>gi|146297208|ref|YP_001180979.1| NusG antitermination factor [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410784|gb|ABP67788.1| transcription antitermination protein nusG [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 175
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 6 AKWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIKAVM + +++TI++ V GF+G P+P+TD EIE + + E V+
Sbjct: 66 SYVLIKAVMDNDIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAMGIKEEEVVEV----FD 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EVG+ V + GPFA F G V ++++E+ +V V + +FGR TPVE Y+QVEK
Sbjct: 122 IEVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174
>gi|225026865|ref|ZP_03716057.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353]
gi|224955872|gb|EEG37081.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353]
Length = 174
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L + E+ +P + VV ++ G K N ++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIEKTIENRKLQDQIFEVRVPLQDVVEMKGGVKKNVSKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ VM D ++ +++T V GF+G G +P P++++E+ ++ ++ + + E
Sbjct: 66 VLVNMVMNDDTWYVVRNTRGVTGFVGPGSDPVPLSEAEMRNLGIVAQSDNE---VEIDIE 122
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V V+ G + V ++ K V +EV +FGR T VE+ + V+K+
Sbjct: 123 IGDLVEVTSGAWEGRVSTVTAINMNKQTVTIEVDMFGRETSVEIGFLDVKKL 174
>gi|159028397|emb|CAO89839.1| nusG [Microcystis aeruginosa PCC 7806]
Length = 205
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CEK+ ++ R+ + + ++ IP V VRK G + + E + F
Sbjct: 21 PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQSATVKVRKDGSRQHGEEKVF 80
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVLI+ +M D + +K+TP VI F+G + P P++ SE++ I Q
Sbjct: 81 PGYVLIRMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
E +Q PV + EVG+++ V GPF F G V V E+ ++ + IFGR TPVEL +
Sbjct: 141 E--IQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEF 198
Query: 171 NQVEK 175
NQVEK
Sbjct: 199 NQVEK 203
>gi|239623239|ref|ZP_04666270.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522205|gb|EEQ62071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 172
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V YS E K I + L + E+++P VV ++ G + ++++ F
Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLI VM D ++ +++T V GF+G G P P+T+ E+ + + E V V
Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASLGFRREEDVL-----V 117
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V G + G +K +++ K + + V +FGR TPVEL + +V+++
Sbjct: 118 DFEVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKRM 172
>gi|311693259|gb|ADP96132.1| NusG antitermination factor [marine bacterium HP15]
Length = 159
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ ++ R++ ++ EI +P+E VV +R+G+K SER+F+PGYVL++ M D +H
Sbjct: 1 MRTLRERVALHEMEDRFGEILVPTEEVVEMREGKKRKSERKFYPGYVLVQMEMDDATWHL 60
Query: 79 IKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+K+TP+V+GF+G T + P+P+T+ E E I+ +VE+ +P FE GE V V +GPFA
Sbjct: 61 VKNTPRVLGFIGGTKDKPAPITEKEAEAILRRVESGADKPKPKTLFEPGEIVRVVEGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 DFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 158
>gi|166366402|ref|YP_001658675.1| transcription antitermination protein NusG [Microcystis aeruginosa
NIES-843]
gi|166088775|dbj|BAG03483.1| transcription antitermination protein [Microcystis aeruginosa
NIES-843]
Length = 205
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CEK+ ++ R+ + + ++ IP V VRK G + + E + F
Sbjct: 21 PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQAATVKVRKDGSRQHGEEKVF 80
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVLIK +M D + +K+TP VI F+G + P P++ SE++ I Q
Sbjct: 81 PGYVLIKMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ +Q PV + EVG+++ V GPF F G V V E+ ++ + IFGR TPVEL +
Sbjct: 141 Q--IQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEF 198
Query: 171 NQVEK 175
NQVEK
Sbjct: 199 NQVEK 203
>gi|189218811|ref|YP_001939452.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4]
gi|189185669|gb|ACD82854.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4]
Length = 201
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 8/180 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY + V S E+K +++ R+ + LV E+ IP ERV VRKG+++ R+ +P
Sbjct: 21 MQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYP 80
Query: 63 GYVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYV ++ + D + ++ +++T VIGF G+NP P+ ++E ++ Q++
Sbjct: 81 GYVFLQIQLRDSSGKLIERAWYFVRETSGVIGF-ADGDNPLPMPREQVEGMLRQIQERTS 139
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F VG+RV V DGPF + G+++ VD E+ ++ V V IFGR TPVEL Y QVEK
Sbjct: 140 SALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199
>gi|317057218|ref|YP_004105685.1| NusG antitermination factor [Ruminococcus albus 7]
gi|315449487|gb|ADU23051.1| NusG antitermination factor [Ruminococcus albus 7]
Length = 175
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 4/174 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K ++I + L L+ E+ IP E V ++ + V +E++ F
Sbjct: 4 EAKWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVRIPMETVTEIKGEKTVEAEKKLF 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YVL+K V+TD ++ +++T V GF+G G P P++D E+E + V
Sbjct: 64 PSYVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDREVEAL----GVDVGTQTVRT 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ V + G F +G V ++D E + V V +FGR T V L Q+ K
Sbjct: 120 DIAVGDDVIMVGGSFDGMSGTVSSLDLENAAADVTVSMFGRETTVTLPLTQLRK 173
>gi|91215203|ref|ZP_01252175.1| putative transcription antitermination protein [Psychroflexus
torquis ATCC 700755]
gi|91186808|gb|EAS73179.1| putative transcription antitermination protein [Psychroflexus
torquis ATCC 700755]
Length = 183
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 71/177 (40%), Positives = 111/177 (62%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K + I +S GL V +I +P+E VV +R G+K+ E+ +FP
Sbjct: 7 KKWYVVRSISGSENKVKDYIEKEISHQGLSDYVDDILVPTENVVQIRDGKKITKEKVYFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY+++ A + +V H IK+ VIGFLG + P P+ +SE+ ++ +V+ + Q+
Sbjct: 67 GYIMVNANLEGEVGHVIKNVNGVIGFLGETKRGDPVPMRESEVNRMLGKVDQLSTQKENV 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF SF G + ++E+K ++ V V IFGR TPVEL+Y QVEKI
Sbjct: 127 AIPFNIGESIKVVDGPFNSFTGTIDKINEDKRKLQVMVKIFGRKTPVELSYMQVEKI 183
>gi|119356075|ref|YP_910719.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
gi|119353424|gb|ABL64295.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
Length = 191
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 103/174 (59%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY +++YS E+K E I ++R GL + +I +P ER V V+ G+K + + FP
Sbjct: 16 PRWYALRIYSGHERKVKEGIEAEVARCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLI+AV+ + + I D P V+GFLG + P+P+ E+E I+ R V
Sbjct: 76 GYVLIEAVLDKQTRNVILDMPSVMGFLGVDDVPTPLRPEEVEKILVTENTVEHRAVIEAP 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F +G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 136 FRIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189
>gi|298206601|ref|YP_003714780.1| putative transcription antitermination protein [Croceibacter
atlanticus HTCC2559]
gi|83849231|gb|EAP87099.1| putative transcription antitermination protein [Croceibacter
atlanticus HTCC2559]
Length = 183
Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 115/178 (64%), Gaps = 3/178 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V+ S E K + I +S GL+ V +I +P+E+V+ +R G+KVN ER +F
Sbjct: 6 EKKWYVVRSVSGQENKIKDYIEREISHHGLEDFVDQILVPTEKVIQIRNGKKVNKERVYF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPV 118
PGY++++A ++ ++ H IK VIGFLG G +P P+ SE+ ++ +V+ +V
Sbjct: 66 PGYIMVQANLSGEIPHIIKGINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELSVAADN 125
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ + VGE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 VAIPYTVGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|1709421|sp|P52852|NUSG_STRGB RecName: Full=Transcription antitermination protein nusG
gi|1213238|emb|CAA65165.1| transcription terminator [Streptomyces galbus]
Length = 309
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY
Sbjct: 127 WYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 186
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
VL++ +T++ + +++TP V GF+G +P P+T EI ++
Sbjct: 187 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAARAEGKPAP 246
Query: 115 --QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ V + FEVG V V+DGPFA+ + + + +V V IFG TPVEL+++Q
Sbjct: 247 QRKVEVQVLDFEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSFDQ 305
Query: 173 VEK 175
++K
Sbjct: 306 IQK 308
>gi|297380385|gb|ADI35272.1| transcription termination/antitermination factor NusG [Helicobacter
pylori v225d]
Length = 175
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V DGPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVDGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|313673493|ref|YP_004051604.1| transcription antitermination protein nusg [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940249|gb|ADR19441.1| transcription antitermination protein nusG [Calditerrivibrio
nitroreducens DSM 19672]
Length = 175
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS EK+ + + ++ L EI IP+E VV + KG K S++ FP
Sbjct: 4 KQWYVVHTYSGFEKRVKKLLEEKIKNENLYDSFGEILIPTENVVELVKGTKKISKKSTFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+L+ VM + +H +K PKV GF+G G NP P+ + +++ +++ A + P ++
Sbjct: 64 GYILVNMVMNTENWHKVKSIPKVTGFVG-GVNPVPIPEQDVKAMIDL--AKSEAPRIAMK 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V DGPF F G+V V+ EK +V V V IFGR TP++L + Q++++
Sbjct: 121 YIKGDVVEVVDGPFQGFTGVVDEVNTEKEKVKVIVSIFGRQTPIDLDFLQIKRV 174
>gi|167748127|ref|ZP_02420254.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662]
gi|317472342|ref|ZP_07931669.1| transcription termination/antitermination factor NusG [Anaerostipes
sp. 3_2_56FAA]
gi|167652119|gb|EDR96248.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662]
gi|316900184|gb|EFV22171.1| transcription termination/antitermination factor NusG [Anaerostipes
sp. 3_2_56FAA]
Length = 182
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K +I + L + E+ +P + V ++ G K ++ FPGY
Sbjct: 6 WYVVHTYSGYENKVKANIEKTIENRKLQDQILEVRVPLQDVTELKNGVKKQVSKKMFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVSS 120
VLI VM D ++ +++T V GF+G G P P+T +E++ + V E ++
Sbjct: 66 VLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGISVGGTNEETPKKEKID 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG+ + V+ G + V V+E K V +EV +FGR T VE+ + ++K
Sbjct: 126 IDVEVGDIIVVTSGAWEGTTSAVTVVNEHKQTVTIEVEMFGRATSVEIDFLDIKK 180
>gi|312135327|ref|YP_004002665.1| nusg antitermination factor [Caldicellulosiruptor owensensis OL]
gi|311775378|gb|ADQ04865.1| NusG antitermination factor [Caldicellulosiruptor owensensis OL]
Length = 174
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 6 AKWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIKA+M +++++TI++ V GF+G P+P+TD EIE + + V
Sbjct: 66 SYVLIKAIMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + GPF+ F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKIVSGPFSDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174
>gi|305679974|ref|ZP_07402784.1| transcription termination/antitermination factor NusG
[Corynebacterium matruchotii ATCC 14266]
gi|305660594|gb|EFM50091.1| transcription termination/antitermination factor NusG
[Corynebacterium matruchotii ATCC 14266]
Length = 291
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R+ ++ + E+ +P E+ + +R G++ +R+ PG
Sbjct: 94 QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++ + D + +++TP V F+G N +PV ++ +
Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213
Query: 110 ----------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ + +P V +EVGE V + +GP AS + + +D E S+V V V I
Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273
Query: 160 FGRVTPVELAYNQVEKI 176
FGR TPV+L ++Q++KI
Sbjct: 274 FGRETPVDLTFDQIKKI 290
>gi|225020307|ref|ZP_03709499.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii
ATCC 33806]
gi|224947051|gb|EEG28260.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii
ATCC 33806]
Length = 291
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R+ ++ + E+ +P E+ + +R G++ +R+ PG
Sbjct: 94 QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++ + D + +++TP V F+G N +PV ++ +
Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213
Query: 110 ----------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ + +P V +EVGE V + +GP AS + + +D E S+V V V I
Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273
Query: 160 FGRVTPVELAYNQVEKI 176
FGR TPV+L ++Q++KI
Sbjct: 274 FGRETPVDLTFDQIKKI 290
>gi|91205973|ref|YP_538328.1| transcription antitermination protein NusG [Rickettsia bellii
RML369-C]
gi|157826663|ref|YP_001495727.1| transcription antitermination protein NusG [Rickettsia bellii OSU
85-389]
gi|122425301|sp|Q1RHC5|NUSG_RICBR RecName: Full=Transcription antitermination protein nusG
gi|91069517|gb|ABE05239.1| Transcription antitermination protein NusG [Rickettsia bellii
RML369-C]
gi|157801967|gb|ABV78690.1| transcription antitermination protein NusG [Rickettsia bellii OSU
85-389]
Length = 190
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY++ S E + + R+S+ + +I +P V V++ + V E++
Sbjct: 17 TKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLM 76
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I ++E + +
Sbjct: 77 PSYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNI--RLETEAKEAKDAK 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EVGE V V++GPF +F G V+ VD+EK+R+ V V IFG+ TP+EL++ QV+K
Sbjct: 135 LYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188
>gi|307152580|ref|YP_003887964.1| NusG antitermination factor [Cyanothece sp. PCC 7822]
gi|306982808|gb|ADN14689.1| NusG antitermination factor [Cyanothece sp. PCC 7822]
Length = 210
Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats.
Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S CEK+ ++ R+ + + +I IP V +RK G + + E + F
Sbjct: 26 ARWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQIQIPQTPTVKIRKDGSRQHGEEKVF 85
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVL++ +M D + +K+TP VI F+G + P P++ SE+E I
Sbjct: 86 PGYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPMPLSSSEVERIFKVA 145
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q PV V EVG+++ V GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 146 QG--QEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEF 203
Query: 171 NQVEK 175
NQ+EK
Sbjct: 204 NQIEK 208
>gi|169350901|ref|ZP_02867839.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552]
gi|169292487|gb|EDS74620.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552]
Length = 185
Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+ + FP
Sbjct: 9 RQWYVVNTYSGHENKVKENLEKRIESMGLQDVLFQIVIPEHVETEIKDGKKITKTKNMFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++T V GF+G+ G P P+ SE++ I+ ++ +
Sbjct: 69 GYVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILEKM--GLSSTKV 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+ G+ V V DGPF G V+++D EK V V G +T V++ Q++K+
Sbjct: 127 EVDFQEGDEVDVIDGPFVGKRGKVESIDTEKEIAKVLVDFLGNLTQVDIELTQLKKV 183
>gi|56750899|ref|YP_171600.1| transcription antitermination protein NusG [Synechococcus elongatus
PCC 6301]
gi|56685858|dbj|BAD79080.1| transcription antitermination protein NusG [Synechococcus elongatus
PCC 6301]
Length = 209
Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S CEK+ ++ R+ + + ++ IP +V ++K G + ++E + F
Sbjct: 25 ARWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVF 84
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVL++ ++ D + +++TP VI F+G + P P++ E+ I +
Sbjct: 85 PGYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRA 144
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q+P + G+++ V GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 145 QE--QKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEF 202
Query: 171 NQVEK 175
NQV+K
Sbjct: 203 NQVQK 207
>gi|229827806|ref|ZP_04453875.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC
49176]
gi|229788005|gb|EEP24119.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC
49176]
Length = 176
Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK----VNSERRF 60
WY+V YS E + I + L + E+ +P+E V +R G++ + R+
Sbjct: 6 WYVVHTYSGYENAVKDDIEATIRSRNLQEQIKEVLVPTEEVTIIRSGKESKKGKPTPRKL 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV I M D+ ++ I++T V GF+G G P P++ E++ ++N V ++V+
Sbjct: 66 YPGYVFINMEMNDETWYVIRNTRGVTGFVGPGSKPVPLSAEEMDKMLNSVRSSVE----- 120
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + G F G V V+ ++ V + + GR TPVE+++ ++KI
Sbjct: 121 ADIEVGDWVRIVTGSFQDREGEVIEVNLDERLVTININSMGRDTPVEISFTDIKKI 176
>gi|254456595|ref|ZP_05070024.1| transcription termination/antitermination factor NusG [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083597|gb|EDZ61023.1| transcription termination/antitermination factor NusG [Candidatus
Pelagibacter sp. HTCC7211]
Length = 176
Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 119/174 (68%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYIVQ +S+ E K I ++ + EI +P+ V V++G++V ++++FP
Sbjct: 2 KNWYIVQSHSSFENKVAGLIKEEADKAKIGEKFEEIIVPTHDVTEVKRGKRVQRKKKYFP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVLIK+ M + +YH IK+ +V GFLG+ P PV+D EIE I+ Q++ V +P S +
Sbjct: 62 GYVLIKSEMDNNIYHMIKNIKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIE 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VGE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK+
Sbjct: 122 YSVGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKV 175
>gi|81299446|ref|YP_399654.1| transcription antitermination protein NusG [Synechococcus elongatus
PCC 7942]
gi|81168327|gb|ABB56667.1| transcription antitermination protein nusG [Synechococcus elongatus
PCC 7942]
Length = 205
Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S CEK+ ++ R+ + + ++ IP +V ++K G + ++E + F
Sbjct: 21 ARWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVF 80
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVL++ ++ D + +++TP VI F+G + P P++ E+ I +
Sbjct: 81 PGYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRA 140
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q+P + G+++ V GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 141 QE--QKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEF 198
Query: 171 NQVEK 175
NQV+K
Sbjct: 199 NQVQK 203
>gi|255324702|ref|ZP_05365816.1| transcription antitermination protein NusG [Corynebacterium
tuberculostearicum SK141]
gi|255298177|gb|EET77480.1| transcription antitermination protein NusG [Corynebacterium
tuberculostearicum SK141]
Length = 306
Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+V+ + G+K +R+ PG
Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230
Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 231 AEGEQVVAMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 291 RETPVELSPTEIERI 305
>gi|261839924|gb|ACX99689.1| transcription antitermination protein NusG [Helicobacter pylori 52]
gi|315587091|gb|ADU41472.1| transcription termination/antitermination factor NusG [Helicobacter
pylori 35A]
Length = 177
Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59
M WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER
Sbjct: 1 MMMDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERS 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P
Sbjct: 61 LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 KIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 177
>gi|116617397|ref|YP_817768.1| transcription antitermination protein nusG [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227431256|ref|ZP_03913310.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|116096244|gb|ABJ61395.1| transcription antitermination protein nusG [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227353018|gb|EEJ43190.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 192
Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 10/183 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ W++V YS E K ++ R G+ + I +P + V +++ G +
Sbjct: 5 IEKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKQTVEND 64
Query: 61 FPGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVE 111
FPGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++
Sbjct: 65 FPGYVLVEMATPYEDNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMG 124
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V R + VG+ V + GPF+ G+V ++D+EK + V +FGR TP EL ++
Sbjct: 125 M-VTREQVDLDVAVGQTVKIISGPFSGMEGVVTSIDQEKQTLEATVAVFGRETPTELDFS 183
Query: 172 QVE 174
V+
Sbjct: 184 DVD 186
>gi|291280160|ref|YP_003496995.1| transcriptional antitermination factor NusG [Deferribacter
desulfuricans SSM1]
gi|290754862|dbj|BAI81239.1| transcriptional antitermination factor NusG [Deferribacter
desulfuricans SSM1]
Length = 174
Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EK+ + + ++ G++ + E+ IP+E VV ++KG+K S++R
Sbjct: 1 MAKQWYVVHTYSGFEKRVKQLLEEKVKNLGIEDEIDEVLIPTEDVVELKKGKKKISKKRT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ M K +H +K PKV GF+G G NP P+ + +++ ++ V+ Q P +
Sbjct: 61 FPGYILVHMEMNTKNWHIVKSIPKVTGFVG-GINPVPIPEQDVKAMLELVKE--QAPRLA 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G++V V DGPF F G ++ V+ +K +V V V IFGR TP+EL + QV++I
Sbjct: 118 SKFIKGDKVEVIDGPFQGFTGEIEEVNPDKEKVKVIVSIFGRQTPIELDFLQVKRI 173
>gi|170077651|ref|YP_001734289.1| transcription antitermination protein NusG [Synechococcus sp. PCC
7002]
gi|169885320|gb|ACA99033.1| transcription termination/antitermination factor NusG
[Synechococcus sp. PCC 7002]
Length = 200
Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CE++ ++ R+ + + ++ IP V +RK G + + E + F
Sbjct: 16 PRWYAVQVASGCEQRVKANLEQRIHTLDVADRIFQVQIPQTPTVKIRKDGSRQHGEEKVF 75
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQV 110
PGYVLI+ + D+ + IK+TP VI F+G + P P++ SE+E I Q
Sbjct: 76 PGYVLIQMTLDDEAWQVIKNTPHVINFVGAEQKRSYGRGRGHVKPVPLSKSEVERIFKQA 135
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V P V +G+++ V GPF F G + V E+S++ + IFGR TPVEL +
Sbjct: 136 Q--VVEPTVKVDMAIGDKILVLSGPFKDFEGEIIEVSPERSKLKALLSIFGRDTPVELEF 193
Query: 171 NQVEK 175
QVEK
Sbjct: 194 TQVEK 198
>gi|224372227|ref|YP_002606599.1| transcription antitermination protein NusG [Nautilia profundicola
AmH]
gi|223589544|gb|ACM93280.1| transcription termination/antitermination factor NusG [Nautilia
profundicola AmH]
Length = 174
Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +QVYS E ++I + L ++ E+ +P+E V+ V+ G+K ER +PGY
Sbjct: 3 WYALQVYSGSELSVKKAIENLKNELNLHDVIGEVIVPTEEVIEVKNGKKKIFERSIYPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++A + +++H I+ PKV F+G + P+P+ +IE I+ + + P V FE
Sbjct: 63 VFLEADLDTELWHKIQSLPKVGRFIGESKKPTPLKKEDIELILEKAKTKTA-PKPKVSFE 121
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GE V +++GPFA+F G V++ D EK + + V IFGR TPVE+ Y +VEKIV
Sbjct: 122 EGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 174
>gi|163755831|ref|ZP_02162949.1| elongation factor Tu [Kordia algicida OT-1]
gi|161324352|gb|EDP95683.1| elongation factor Tu [Kordia algicida OT-1]
Length = 183
Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K I ++R GL+ V E+ +P+E+V+ +R G+K+N ER +FP
Sbjct: 7 KKWYVVRAVSGQENKVKAYIESEITRLGLEDYVEEVLVPTEKVIQIRNGKKINKERVYFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY++IKA + +V H IK VIGFLG G +P P+ SE+ ++ +V+ +V+
Sbjct: 67 GYIMIKANIAGEVTHVIKSVTNVIGFLGEVKGGDPVPLRQSEVNRMLGKVDELSVKTDNV 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 VIPFTLGETVKVIDGPFNGFNGSVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183
>gi|312793745|ref|YP_004026668.1| nusg antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312876856|ref|ZP_07736833.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
gi|311796371|gb|EFR12723.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
gi|312180885|gb|ADQ41055.1| NusG antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 174
Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 6 AKWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V
Sbjct: 66 SYVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GPF F G V ++ E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKVVSGPFTDFYGPVVEINRERKKVKVMLNLFGRETPVEFDYHQVERL 174
>gi|146299698|ref|YP_001194289.1| NusG antitermination factor [Flavobacterium johnsoniae UW101]
gi|146154116|gb|ABQ04970.1| transcription antitermination protein nusG [Flavobacterium
johnsoniae UW101]
Length = 183
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K I ++R G++ V+++ +P+E+VV+V++G+K++ ++ +FP
Sbjct: 7 KKWYVVRAVSGQENKVKAYIETEIARLGMEDYVSQVLVPTEKVVTVKEGKKMSKDKVYFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GYV+I+A + ++ H IK VIGFLG G P P+ SE+ ++ +V+ AV
Sbjct: 67 GYVMIEANLVGEIPHIIKSITSVIGFLGEIKGGEPVPLRLSEVNRMLGKVDELAVNTDTR 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 127 SIPFSLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183
>gi|191639230|ref|YP_001988396.1| Transcription antitermination protein NusG [Lactobacillus casei
BL23]
gi|190713532|emb|CAQ67538.1| Transcription antitermination protein NusG [Lactobacillus casei
BL23]
Length = 184
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E K ++ R S +D + + +P E + G++ ++ F
Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ ++++ + + +
Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMGMSTRHN- 127
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VGE V + DG F +G V VD+EK ++ V +F R EL ++QV+K+
Sbjct: 128 -DVEFDVGEPVTIIDGDFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184
>gi|94984750|ref|YP_604114.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300]
gi|94555031|gb|ABF44945.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300]
Length = 190
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R + G+ H + ++ P+E V +R+G +K R
Sbjct: 1 MSIEWYAVHTYVGQEDRVEQHLLERAKKLGMLHTKIFQVLQPTEEAVELREGGKKETVRR 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + ++ T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLASV 120
Query: 111 EAAVQR-----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A Q P V + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP
Sbjct: 121 GVAAQPQEEAAPRVKVDLKPGDMVRVTAGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180
Query: 166 VELAYNQVEK 175
VEL + QV K
Sbjct: 181 VELDFAQVSK 190
>gi|222529521|ref|YP_002573403.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725]
gi|312622249|ref|YP_004023862.1| nusg antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
gi|222456368|gb|ACM60630.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725]
gi|312202716|gb|ADQ46043.1| NusG antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
Length = 174
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 6 AKWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V
Sbjct: 66 SYVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GPFA F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKVVSGPFADFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174
>gi|332042977|gb|EGI79175.1| transcription termination/antitermination factor NusG [Lacinutrix
algicola 5H-3-7-4]
Length = 184
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V+ S E K I ++R GL V ++ +P+E VV +R G+K+N E+ +F
Sbjct: 6 EKKWYVVRAVSGQENKIKTYIENEIARLGLQDYVEQVLVPTENVVQIRNGKKINKEKVYF 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA--AVQRP 117
GY++IKA +T +V H IK VIGFLG G +P P+ SE+ ++ +V+
Sbjct: 66 SGYIMIKANLTGEVPHIIKGITNVIGFLGATKGGDPLPLRQSEVNRMLGKVDELTVEADT 125
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ + GE V V DGPF F+G ++N++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 126 NVAIPYTKGETVKVIDGPFNGFDGTIENINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184
>gi|260063562|ref|YP_003196642.1| putative transcription antitermination protein [Robiginitalea
biformata HTCC2501]
gi|88783006|gb|EAR14180.1| putative transcription antitermination protein [Robiginitalea
biformata HTCC2501]
Length = 183
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I + R G + E+ +P+E+VV +R G+K+N ER +
Sbjct: 5 LEKKWYVVRAVSGQENKIKGYIESEVERHGFGDNLEEVLVPTEKVVQIRNGKKINKERVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRP 117
FPGY+++KA +T ++ H I+ VIGFLG G +P P+ SE+ ++ +V+ A+
Sbjct: 65 FPGYIMVKANLTGEMIHIIRSITNVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAINTD 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 AVAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|196233624|ref|ZP_03132465.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
gi|196222294|gb|EDY16823.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
Length = 188
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY VQV + E K ++++ R+ + V E+ +P+ERV V++G+K + R+ P
Sbjct: 8 AQWYAVQVLAGQENKVLDNLTKRIKTEEMSDFVYEVIVPTERVSEVKRGKKTETVRKLMP 67
Query: 63 GYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYVL+ + D+ ++ I++T VIGF G E P P+ SE+E ++ QV +
Sbjct: 68 GYVLVNMWLLDENRQPVDRTWYFIRETTGVIGFAGNKERPIPMRPSEVEAVLAQVRGTEE 127
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F VGE V VSDGPF + +G V +D ++ ++ V + IFGR EL Y Q+E+
Sbjct: 128 KAKPKIEFNVGETVKVSDGPFQNQSGTVTEIDPDRGKIRVSISIFGREAIAELEYWQIER 187
>gi|326334492|ref|ZP_08200703.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325693261|gb|EGD35189.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 182
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I +SR G V ++ +P+E+V +R G+K+N E+ F
Sbjct: 4 LEKKWYVVRAVSGQENKVKSYIESEISRLGYADYVEQVLVPTEKVPQLRNGKKINVEKVF 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQR-P 117
FPGYV++KA ++ +V H IK+ VIGFLG G P+P+ SE+ ++ V+ ++
Sbjct: 64 FPGYVMVKADLSGEVSHIIKNISGVIGFLGETKGGTPTPIRKSEVNRMLGIVDELQEKVE 123
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +E+GE V V DGPF F G V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 124 TVLIPYEIGESVKVIDGPFNGFTGNVEKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182
>gi|114799751|ref|YP_760699.1| transcription termination/antitermination factor NusG [Hyphomonas
neptunium ATCC 15444]
gi|114739925|gb|ABI78050.1| transcription termination/antitermination factor NusG [Hyphomonas
neptunium ATCC 15444]
Length = 180
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 4/180 (2%)
Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+ +WYIV YSN EKK +I + R GL HL+ EI +P+E VV V +G+K E+R
Sbjct: 1 MSDAKWYIVHAYSNFEKKVAATIREQAERKGLLHLIEEIEVPTEEVVEVARGKKKTVEKR 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQ-VEAAVQR 116
FFPGYVL+KA +TD +YH +KDTPKV GFLG G+ P PV E++ I+ + V+ +R
Sbjct: 61 FFPGYVLMKAQLTDDIYHLVKDTPKVSGFLGAEGGKKPLPVRQREVDRILGKSVDPTAER 120
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
P V FE+GE+V V+DGPF F G V+ +DE R+ V V IFGR TPV+L ++QV KI
Sbjct: 121 PRPKVSFEIGEQVQVNDGPFQGFEGAVEEIDEANGRLKVTVSIFGRGTPVDLEFDQVVKI 180
>gi|326693428|ref|ZP_08230433.1| transcription termination/antitermination factor NusG [Leuconostoc
argentinum KCTC 3773]
Length = 208
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 10/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ W++V YS E K ++ R G+ + I +P + V + + G S
Sbjct: 21 IEKSWFVVHTYSGYEHKVKANLESRTQTMGMTEQIFRILVPEQEVTTFQDGEAKTSVEND 80
Query: 61 FPGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVE 111
FPGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++
Sbjct: 81 FPGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMG 140
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V R V + EVG+ V + GPFA G V +VD EK + V +FGR TP EL +
Sbjct: 141 M-VTREVVDLDVEVGQIVKIIAGPFAGMEGTVVSVDAEKQTLEATVEVFGRETPTELDFA 199
Query: 172 QVEKIV 177
V+ ++
Sbjct: 200 DVDTVL 205
>gi|298490349|ref|YP_003720526.1| NusG antitermination factor ['Nostoc azollae' 0708]
gi|298232267|gb|ADI63403.1| NusG antitermination factor ['Nostoc azollae' 0708]
Length = 209
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G++ SE +
Sbjct: 24 EARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPHTPTVKIRKDGKRQPSEEKV 83
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ ++ D + +++T VI F+G + P P+++SE+E I Q
Sbjct: 84 FPGYVLVRMMLNDDTWQVVRNTTHVINFVGAEQKRGTGKGRGHVKPVPLSNSEVERIFKQ 143
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 144 T--SEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 201
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 202 FNQVEK 207
>gi|255530756|ref|YP_003091128.1| transcription termination/antitermination factor NusG [Pedobacter
heparinus DSM 2366]
gi|255343740|gb|ACU03066.1| transcription termination/antitermination factor NusG [Pedobacter
heparinus DSM 2366]
Length = 180
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR G HLV ++ IP E+ ++ G+K+ ER F+PG
Sbjct: 6 KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKDGKKIAKERNFYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVLI+A++ ++ H IK+ VIGFLG G NP P+ +E+ I+ +V E + Q +V
Sbjct: 66 YVLIEAILDGELEHIIKNINSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V DGPF F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 AYYVGENVKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179
>gi|313904451|ref|ZP_07837828.1| NusG antitermination factor [Eubacterium cellulosolvens 6]
gi|313470787|gb|EFR66112.1| NusG antitermination factor [Eubacterium cellulosolvens 6]
Length = 174
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + L+ + E+ +P E VV V+ G K +++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVKKQVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ +M ++ +++T V GF+G+ + P P++ +E++ + E
Sbjct: 63 PGYVLVHMIMNKDNWYVVRNTRGVTGFVGSNPQEPVPLSPAEMQPLGVGSEE-----KMV 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E+G++V V GP+ G + +++ K V + V +FGR TPVE+ + +V K+
Sbjct: 118 IDLEIGDQVVVIGGPWKDSEGEITAINQSKQTVTINVEMFGRATPVEIGFAEVRKV 173
>gi|312127420|ref|YP_003992294.1| nusg antitermination factor [Caldicellulosiruptor hydrothermalis
108]
gi|311777439|gb|ADQ06925.1| NusG antitermination factor [Caldicellulosiruptor hydrothermalis
108]
Length = 174
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 6 AKWYVVHTYAGYENKVKANLEKIIENRNLADRILDIRIPTELVTEIKDGKKIVKEKKKFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V
Sbjct: 66 SYVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEIFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V V GPF F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKVVSGPFTDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174
>gi|304384444|ref|ZP_07366848.1| transcription termination/antitermination factor NusG [Prevotella
marshii DSM 16973]
gi|304334464|gb|EFM00753.1| transcription termination/antitermination factor NusG [Prevotella
marshii DSM 16973]
Length = 180
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY+++ S E K E I L + L V+++ IP ER ++R G+++ E+
Sbjct: 6 MRWYVLRAVSGKEAKVKEYIEAELKHNALLSSHVSQVLIPLERHTALRNGKRIVKEKISL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV I+A + + H ++ P V+GFLG ENP+PV SEI ++ E + +
Sbjct: 66 PGYVFIEADLNGDIAHLLRFMPNVLGFLGGMENPTPVQQSEINRMLGNAEESELMYEADN 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V DGPF+ FNGI++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYAVNESVKVCDGPFSGFNGIIEEVNAEKRKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|260655340|ref|ZP_05860828.1| transcription termination/antitermination factor NusG [Jonquetella
anthropi E3_33 E1]
gi|260629788|gb|EEX47982.1| transcription termination/antitermination factor NusG [Jonquetella
anthropi E3_33 E1]
Length = 185
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ VQ YS E K ++ R++ + + + +P E VV V+ G+ R+ FP
Sbjct: 12 QWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPS 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSVF 122
YVL++ +M D+ ++ ++ TP V GF+G G +P P++D E+ ++ +V + P V
Sbjct: 72 YVLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVE 131
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V GPF G+V +V+ +V + +FGR T E+ + ++E++
Sbjct: 132 CQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185
>gi|228472143|ref|ZP_04056909.1| transcription termination/antitermination factor NusG
[Capnocytophaga gingivalis ATCC 33624]
gi|228276346|gb|EEK15070.1| transcription termination/antitermination factor NusG
[Capnocytophaga gingivalis ATCC 33624]
Length = 182
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 77/179 (43%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY+V+ S E K I +SR G V ++ +P+E+V +R G+KVN E+ F
Sbjct: 4 LEKNWYVVRAVSGQENKVKNYIESEISRLGYGDYVEQVLVPTEKVPQLRNGKKVNVEKVF 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQR-P 117
FPGYV+IKA ++ ++ H IK VIGFLG G P+P+ SE+ ++ V+ ++
Sbjct: 64 FPGYVMIKADLSGEISHLIKGISGVIGFLGETKGGAPTPIRKSEVNRMLGIVDELQEKVD 123
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +EVGE V V DGPF F G V V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 124 TVLIPYEVGESVKVIDGPFNGFTGNVDKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182
>gi|157738108|ref|YP_001490792.1| transcription antitermination protein NusG [Arcobacter butzleri
RM4018]
gi|315636460|ref|ZP_07891702.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Arcobacter butzleri JV22]
gi|157699962|gb|ABV68122.1| transcription termination factor NusG [Arcobacter butzleri RM4018]
gi|315479241|gb|EFU69932.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Arcobacter butzleri JV22]
Length = 175
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q YS E +++ D + E+ +P+E ++ ++KG+K ER
Sbjct: 1 MAHKWYAIQTYSGSELSVKKALIKLAEEMA-DDRIQEVLVPTEDLIEIKKGKKTIVERPL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+P Y K + ++H I+ PKV F+G + P+ ++D +I I+ +V+
Sbjct: 60 YPAYAFAKIDLDTGLWHRIQSMPKVGRFIGESKKPTALSDKDINLILEKVKNRAA-AKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F+ GE V +++G FA+FNG+V++ D + + V IFGR TPVE++Y QVE+IV
Sbjct: 119 VSFDTGEMVRINEGAFANFNGLVEDFDMVSGILKLNVSIFGRNTPVEISYTQVERIV 175
>gi|153208145|ref|ZP_01946573.1| transcription termination/antitermination factor NusG [Coxiella
burnetii 'MSU Goat Q177']
gi|161830723|ref|YP_001596170.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 331]
gi|165918637|ref|ZP_02218723.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 334]
gi|120576158|gb|EAX32782.1| transcription termination/antitermination factor NusG [Coxiella
burnetii 'MSU Goat Q177']
gi|161762590|gb|ABX78232.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 331]
gi|165917665|gb|EDR36269.1| transcription termination/antitermination factor NusG [Coxiella
burnetii RSA 334]
Length = 173
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFP
Sbjct: 6 KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V
Sbjct: 66 GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 120 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 172
>gi|229817144|ref|ZP_04447426.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM
20098]
gi|229784933|gb|EEP21047.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM
20098]
Length = 281
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R+ GL+ + +I +P E V + K R PG
Sbjct: 96 KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTEKGKKVLTRVRVPG 155
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ ++ +++T V GF+G ++P+P++ E+ +M +
Sbjct: 156 YVLIRMWPDEEARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDKP 215
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 216 AAAKKRKLEVSYAVGDQVTVTDGPFTTMPAVVSDVEPTTQKLTVLVSIFGRDTPVELDFN 275
Query: 172 QVEKI 176
QVEK+
Sbjct: 276 QVEKL 280
>gi|218283698|ref|ZP_03489659.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989]
gi|218215687|gb|EEC89225.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989]
Length = 181
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ WY+V Y E + E++ R+ GL+ + +I + E+ + + G+ V
Sbjct: 4 LKKEWYVVNTYVGQENRVKENLERRIKTMGLEDFLFQIVVAEEKEIEYKNGKPVEKTHNL 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
F GY+L++ +MTD+ ++ +++TP V GF+G+ G P PV E++ ++ ++ Q
Sbjct: 64 FSGYLLVQMIMTDEAWYIVRNTPGVTGFIGSSGKGAKPFPVAQEEVDAVLRRL--GRQDV 121
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FEVG+RV +++G F + G ++++DEEK V +++FGR TP E+ Y ++K+
Sbjct: 122 NVQVDFEVGDRVEITNGAFKNSEGTIESMDEEKKEATVLLILFGRETPTEIPYMDLKKV 180
>gi|302871673|ref|YP_003840309.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47]
gi|302574532|gb|ADL42323.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47]
Length = 174
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP
Sbjct: 6 AKWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V
Sbjct: 66 SYVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFD 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + GPF F G V +++E+ +V V + +FGR TPVE Y+QVE++
Sbjct: 121 IEVGDNVKIVSGPFTDFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174
>gi|300779868|ref|ZP_07089724.1| transcription antitermination protein nusg [Corynebacterium
genitalium ATCC 33030]
gi|300533978|gb|EFK55037.1| transcription antitermination protein nusg [Corynebacterium
genitalium ATCC 33030]
Length = 342
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 24/197 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WYI+Q YS E K ++ R+ ++ + ++ +P E+V + G+K +R+ PG
Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++ + D + +++TP V F+G N +PV ++ +
Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASEA 265
Query: 110 ---------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ ++P + F+VGE V + G AS + + +D E ++ V IF
Sbjct: 266 NTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSIF 325
Query: 161 GRVTPVELAYNQVEKIV 177
GR TPVEL +Q+E+I+
Sbjct: 326 GRETPVELTADQIERIM 342
>gi|67925194|ref|ZP_00518562.1| transcription antitermination protein NusG [Crocosphaera watsonii
WH 8501]
gi|67852953|gb|EAM48344.1| transcription antitermination protein NusG [Crocosphaera watsonii
WH 8501]
Length = 214
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S CEK+ ++ R+ + + +I IP V VRK G + E + F
Sbjct: 30 ARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKVF 89
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ +M D + +K+TP VI F+G+ + P P++ SE+E I Q
Sbjct: 90 PGYVLVRMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRRRGHVKPLPLSASEVERIFRQA 149
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
E P+ + E+G+++ V GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 150 EQPE--PLVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEF 207
Query: 171 NQVEK 175
NQVEK
Sbjct: 208 NQVEK 212
>gi|313206995|ref|YP_004046172.1| transcription antitermination protein nusg [Riemerella
anatipestifer DSM 15868]
gi|312446311|gb|ADQ82666.1| transcription antitermination protein nusG [Riemerella
anatipestifer DSM 15868]
gi|315024071|gb|EFT37073.1| Transcription antitermination protein NusG [Riemerella
anatipestifer RA-YM]
gi|325335571|gb|ADZ11845.1| Transcription antiterminator [Riemerella anatipestifer RA-GD]
Length = 180
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + R L+ V++I IP E+ + +R G+KV E+ ++PG
Sbjct: 5 KWYVLKAVSGQENKVKSYIENEIQRFKLEDFVSQIVIPMEKTIQMRNGKKVQKEKPYYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV-SS 120
Y++++A + +V H IK+ P VI FL G +P P+ SE+ ++ +++ Q
Sbjct: 65 YLMVEANLKGEVPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSQFATDVD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VGE V V DGPF FNG ++ + E+K ++ V V+IFGR TP+EL Y QVEKI
Sbjct: 125 IPYVVGESVKVIDGPFNGFNGTIEKIHEDKKKLEVMVLIFGRKTPLELNYMQVEKI 180
>gi|109948066|ref|YP_665294.1| transcription antitermination protein NusG [Helicobacter
acinonychis str. Sheeba]
gi|109715287|emb|CAK00295.1| transcription antitermination protein NusG [Helicobacter
acinonychis str. Sheeba]
Length = 175
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I S L + EI +P+E ++ V +K + +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLASDHDLKDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + + IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNISIFGRNTPIEILHSQVEKII 175
>gi|253579423|ref|ZP_04856693.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849521|gb|EES77481.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 171
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K I + L+ + E+ +P + V ++ G +++ F
Sbjct: 3 EAKWYVVHTYSGYENKVKVDIEKTIENRHLEDQILEVRVPLQEVAELKNGALKQVQKKMF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +++ V
Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMLPL------GIKKEEIQV 116
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V V+ G + G++ ++ +K + V +FGR TPVE+++ +++++
Sbjct: 117 DFAEGDTVVVTGGAWKDTVGVITALNVQKQTATINVELFGRETPVEISFAEIKQM 171
>gi|226355465|ref|YP_002785205.1| transcription antitermination protein [Deinococcus deserti VCD115]
gi|226317455|gb|ACO45451.1| putative transcription antitermination protein nusG [Deinococcus
deserti VCD115]
Length = 190
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R ++ G+ + ++ P+E V +R G +K +R
Sbjct: 1 MSIEWYAVHTYVGQEDRVEQHLMERATKLGMRGTKIFQVLQPTEEAVELRDGGKKETVQR 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + ++ T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSTQEVDRLLASV 120
Query: 111 EAA-----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A + P + + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP
Sbjct: 121 GVATQAPVEEAPRVKIDLKAGDMVRVTSGPFADFSGVVSEVNLPQAKVKVLVSIFGRETP 180
Query: 166 VELAYNQVEK 175
VEL ++QV K
Sbjct: 181 VELDFSQVSK 190
>gi|17232791|ref|NP_489339.1| transcription antitermination protein NusG [Nostoc sp. PCC 7120]
gi|17134438|dbj|BAB76998.1| transcription antitermination protein [Nostoc sp. PCC 7120]
Length = 210
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E +
Sbjct: 25 EARWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKV 84
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ VM D + +++T VI F+G + P P++ SE+E I Q
Sbjct: 85 FPGYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQ 144
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 145 T--TEQEPVVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 202
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 203 FNQVEK 208
>gi|320531938|ref|ZP_08032843.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 171 str. F0337]
gi|320135852|gb|EFW27895.1| transcription termination/antitermination factor NusG [Actinomyces
sp. oral taxon 171 str. F0337]
Length = 281
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 29/202 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
+WY++ YS E++ I R ++ + + T+P E V+ ++ G +K R P
Sbjct: 80 QWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEVSRVRIP 139
Query: 63 GYVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------- 110
GYV ++ + D KV+ TIKDTP V GF+G NP P+T E +
Sbjct: 140 GYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTPEEIAAK 199
Query: 111 ----------------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
+ A V V FEVGE V V+DGPF S + + E ++
Sbjct: 200 EAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQ 259
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + +FGR TP EL++ QV KI
Sbjct: 260 VLISLFGRDTPAELSFTQVAKI 281
>gi|188527990|ref|YP_001910677.1| transcription antitermination protein NusG [Helicobacter pylori
Shi470]
gi|207091668|ref|ZP_03239455.1| transcription antitermination protein NusG [Helicobacter pylori
HPKX_438_AG0C1]
gi|217032213|ref|ZP_03437711.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128]
gi|217034092|ref|ZP_03439513.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10]
gi|298735784|ref|YP_003728309.1| transcriptional antiterminator NusG [Helicobacter pylori B8]
gi|308183308|ref|YP_003927435.1| transcription antitermination protein NusG [Helicobacter pylori
PeCan4]
gi|308184950|ref|YP_003929083.1| transcription antitermination protein NusG [Helicobacter pylori
SJM180]
gi|188144230|gb|ACD48647.1| transcription antitermination protein NusG [Helicobacter pylori
Shi470]
gi|216943487|gb|EEC22941.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10]
gi|216946084|gb|EEC24695.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128]
gi|261838525|gb|ACX98291.1| transcription termination factor G [Helicobacter pylori 51]
gi|298354973|emb|CBI65845.1| transcriptional antiterminator NusG [Helicobacter pylori B8]
gi|308060870|gb|ADO02766.1| transcription antitermination protein NusG [Helicobacter pylori
SJM180]
gi|308062484|gb|ADO04372.1| transcription antitermination protein NusG [Helicobacter pylori
Cuz20]
gi|308063984|gb|ADO05871.1| transcription antitermination protein NusG [Helicobacter pylori
Sat464]
gi|308065493|gb|ADO07385.1| transcription antitermination protein NusG [Helicobacter pylori
PeCan4]
gi|317009881|gb|ADU80461.1| transcription antitermination protein NusG [Helicobacter pylori
India7]
gi|317012984|gb|ADU83592.1| transcription antitermination protein NusG [Helicobacter pylori
Lithuania75]
Length = 175
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|300172658|ref|YP_003771823.1| transcription antitermination protein NusG [Leuconostoc
gasicomitatum LMG 18811]
gi|299887036|emb|CBL91004.1| Transcription antitermination protein NusG [Leuconostoc
gasicomitatum LMG 18811]
Length = 209
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 10/186 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ W++V YS E K ++ R G+ + I +P + V +++ G S
Sbjct: 22 IEKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKTSVEND 81
Query: 61 FPGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVE 111
FPGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++
Sbjct: 82 FPGYVLVEMATPHDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRMG 141
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V R V + EVG+ V + GPF+ V VD EK + V +FGR TP EL +
Sbjct: 142 M-VTREVVDLAVEVGQTVKIITGPFSGMEATVTMVDVEKQTLEATVEVFGRETPTELDFA 200
Query: 172 QVEKIV 177
V+ ++
Sbjct: 201 DVDTVL 206
>gi|309792762|ref|ZP_07687207.1| transcription termination/antitermination factor NusG
[Oscillochloris trichoides DG6]
gi|308225214|gb|EFO78997.1| transcription termination/antitermination factor NusG
[Oscillochloris trichoides DG6]
Length = 159
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+++ R+ + + + + +P+E + ++ G++ ++ +PGYVL++ MTD ++
Sbjct: 2 KQNLEHRIDSMEMRNQIFRVIVPTEEEIEIKNGQRRTVNKKIYPGYVLVQMHMTDDSWYV 61
Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138
+++TP V F+G G P+P+ D E++ I+ Q+E + P V ++ G+ V ++DGPF
Sbjct: 62 VRNTPGVTSFVGHGNRPTPLEDDEVKTILKQMEG--EAPKVRVSYQKGQAVKITDGPFTD 119
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F GIV +D E+ RV V V FGR PVEL + QV ++V
Sbjct: 120 FEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 158
>gi|227510708|ref|ZP_03940757.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227513723|ref|ZP_03943772.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC
11577]
gi|227083042|gb|EEI18354.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC
11577]
gi|227189829|gb|EEI69896.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 183
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 6/177 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRF 60
+WY++ YS E K ++ R G+ L+ + +P +E +KG+ +
Sbjct: 6 EKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRVVVPETEEHEVDKKGKDKVKMDKT 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + +
Sbjct: 66 FPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRH- 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ VG+ V + DG F NG V +D EK R+ V + +FGR T EL +NQV+
Sbjct: 125 -EDLDVNVGDSVKIVDGAFTGLNGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQVD 180
>gi|149177085|ref|ZP_01855693.1| transcription antiterminator NusG [Planctomyces maris DSM 8797]
gi|148844150|gb|EDL58505.1| transcription antiterminator NusG [Planctomyces maris DSM 8797]
Length = 194
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++V SN EK +++ + R GL+ EI IP+E+VV + G+K ER+ +PGY
Sbjct: 22 WYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERKLYPGY 81
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVFF 123
++I+ + D ++ ++ T V F G P P+ + EI ++ + E+ + PV + F
Sbjct: 82 LMIQVELNDDSWYLVRSTNGVGDFTGAAGKPIPMQEHEIARMLGREESKEETPVKIKLDF 141
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V V D F F G + VDE +V V + IF R TP EL Y Q+EK+
Sbjct: 142 QVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194
>gi|224436430|ref|ZP_03657447.1| transcription antitermination protein NusG [Helicobacter cinaedi
CCUG 18818]
gi|313142944|ref|ZP_07805137.1| transcription termination factor NusG [Helicobacter cinaedi CCUG
18818]
gi|313127975|gb|EFR45592.1| transcription termination factor NusG [Helicobacter cinaedi CCUG
18818]
Length = 171
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 4/175 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY +Q YS EK E+I + ++ + E+ +P+E ++ + K +R +P
Sbjct: 1 MEWYAIQTYSGSEKSVGEAIRNLIVQNQMQDRFGEVVVPTESIIETK---KKIVDRSLYP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV I+ + K++H I+ P+V F+G + P+P+++++I I+ +V P +
Sbjct: 58 GYVFIQVDLDTKLWHMIQSLPRVGRFIGESKKPTPLSEADIAKILEKVRNPSA-PKPKIS 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V + DGPF +F G V+ D E ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 117 FEQGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRNTPVEILYSQVEKIV 171
>gi|15645817|ref|NP_207994.1| transcription antitermination protein NusG [Helicobacter pylori
26695]
gi|108563567|ref|YP_627883.1| transcription antitermination protein NusG [Helicobacter pylori
HPAG1]
gi|208435099|ref|YP_002266765.1| transcription termination factor [Helicobacter pylori G27]
gi|2499340|sp|P55976|NUSG_HELPY RecName: Full=Transcription antitermination protein nusG
gi|2314365|gb|AAD08249.1| transcription termination factor NusG (nusG) [Helicobacter pylori
26695]
gi|107837340|gb|ABF85209.1| transcription termination factor NusG [Helicobacter pylori HPAG1]
gi|208433028|gb|ACI27899.1| transcription termination factor [Helicobacter pylori G27]
gi|317177947|dbj|BAJ55736.1| transcription antitermination protein NusG [Helicobacter pylori
F16]
Length = 176
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|116491404|ref|YP_810948.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1]
gi|118586217|ref|ZP_01543682.1| transcriptional antitermination factor [Oenococcus oeni ATCC
BAA-1163]
gi|290890972|ref|ZP_06554036.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429]
gi|116092129|gb|ABJ57283.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1]
gi|118433346|gb|EAV40047.1| transcriptional antitermination factor [Oenococcus oeni ATCC
BAA-1163]
gi|290479371|gb|EFD88031.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429]
Length = 185
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSERRFF 61
WY+V YS E + +++ R G+ + ++ +P E++ + G F
Sbjct: 8 KDWYVVHTYSGYENRVKQNLEQRRESMGMTDFIFQVIVPENEKIKTGPNGELKKVVENDF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+PVT EI+ IM+++ ++R V
Sbjct: 68 PGYVLVEMVMTDQSWYVVRNTPGVTGFLGSHGQGSKPNPVTKDEIDRIMHRMGL-IERKV 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VGE V + G G + +D EK V V V +FGR T E+ +N ++KI
Sbjct: 127 DDLNVKVGETVSIIGGAMNGMEGKITAIDREKQEVQVLVDMFGRETETEVPFNDIDKI 184
>gi|75908765|ref|YP_323061.1| transcription antitermination protein NusG [Anabaena variabilis
ATCC 29413]
gi|75702490|gb|ABA22166.1| transcription antitermination protein nusG [Anabaena variabilis
ATCC 29413]
Length = 210
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E +
Sbjct: 25 EARWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKV 84
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ VM D + +++T VI F+G + P P++ SE+E I Q
Sbjct: 85 FPGYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQ 144
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
Q P+ + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 145 T--TEQEPIVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 202
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 203 FNQVEK 208
>gi|306820720|ref|ZP_07454347.1| transcription termination/antitermination factor NusG [Eubacterium
yurii subsp. margaretiae ATCC 43715]
gi|304551219|gb|EFM39183.1| transcription termination/antitermination factor NusG [Eubacterium
yurii subsp. margaretiae ATCC 43715]
Length = 177
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K S+ + G+ + + IP E VV +KG + +R+ FPGY
Sbjct: 9 WYVVHTYSGYENKVKTSLEKTIENLGMQEYIQNVVIPEENVVENKKGIEKIRKRKIFPGY 68
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VLIK V+TD ++ +++T V GF+G P P+TD E+ + + V +V FE
Sbjct: 69 VLIKMVVTDDSWYLVRNTKGVTGFVGANSKPIPLTDEEVAKMR----LEEEIYVGNVNFE 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ + + GPF S + + E+KS V ++ +FG+ T +EL ++Q++KI
Sbjct: 125 EGDNIIILGGPFDSREAKIIKIMEDKSMVKAQMSMFGKETTIELGFSQIKKI 176
>gi|187735541|ref|YP_001877653.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835]
gi|187425593|gb|ACD04872.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835]
Length = 189
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ V S E + I + + L + + +P+E + VR G+K + FPG
Sbjct: 10 QWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKLFPG 69
Query: 64 YVLIKA-------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
YV + +++ I+ VI G+ P P+ E+E ++ ++A
Sbjct: 70 YVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSRNAPLPMRKREVEDLLPLLDAEAVA 129
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F VG+ V V +GPF S G ++ +D EK ++ V V IFGR TPV+L Y QVEK
Sbjct: 130 ARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQVEK 188
>gi|229830146|ref|ZP_04456215.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM
14600]
gi|229791444|gb|EEP27558.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM
14600]
Length = 165
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
YS E K I ++ L + E+ +P + VV V+ G + ++ FPGYVLI
Sbjct: 3 HTYSGYENKVKADIEKTVANRHLQDQILEVMVPMQDVVEVKNGVRKTVSKKIFPGYVLIN 62
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
M D ++ +++T GF+G G +P P+T+ E+ + + V F VG+
Sbjct: 63 MYMNDDTWYVVRNTRGATGFVGPGSDPVPLTEREMSKM------GIHTENIEVDFGVGDT 116
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V G + G+V+ ++ K + + V +FGR TPVE+++ V+K+
Sbjct: 117 VSVIGGAWKDTVGVVQAMNPNKQSLTINVELFGRETPVEISFTDVQKM 164
>gi|89890187|ref|ZP_01201698.1| transcription termination/antitermination factor NusG
[Flavobacteria bacterium BBFL7]
gi|89518460|gb|EAS21116.1| transcription termination/antitermination factor NusG
[Flavobacteria bacterium BBFL7]
Length = 185
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V+ S E K + I ++ L + +I +P+E+VV +R G+K+N E+ +FP
Sbjct: 9 MHWYVVRSVSGQENKIKDYIESEIAHHNLQDYLKQILVPTEKVVQIRNGKKINKEKVYFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY++I+A + +V H IK VIGFLG G +P P+ SE+ ++ +V+ A Q
Sbjct: 69 GYIMIQARLEGEVPHIIKSVNGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAEQVDNI 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ ++VGE + V DGPF FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 129 AIPYKVGETIKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185
>gi|149278895|ref|ZP_01885030.1| putative transcription antitermination protein [Pedobacter sp.
BAL39]
gi|149230514|gb|EDM35898.1| putative transcription antitermination protein [Pedobacter sp.
BAL39]
Length = 180
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR G HLV ++ IP E+ +++G+K+ ER F+PG
Sbjct: 6 KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKEGKKIAKERNFYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVLI+A + ++ H IK+ VIGFLG G NP P+ +E+ I+ +V E + Q ++
Sbjct: 66 YVLIEANLDGELEHIIKNVNSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE + V DGPF F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 AYYVGENIKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179
>gi|193213527|ref|YP_001999480.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327]
gi|193087004|gb|ACF12280.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327]
Length = 191
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 102/172 (59%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++YS E+K E I R GL + ++ IP ER V V+ G+K + + FPGY
Sbjct: 18 WYALRIYSGHERKVKEGIEMEAERHGLVDKIKQVYIPYERFVEVKNGKKRSLTKNAFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL++AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V F+
Sbjct: 78 VLLEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPESAVEHRAVVEAPFK 137
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V V DGPF+S GIV V E+ +V V + FGR TP EL ++QV+ +
Sbjct: 138 VGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKSV 189
>gi|300865662|ref|ZP_07110433.1| transcription antitermination protein NusG [Oscillatoria sp. PCC
6506]
gi|300336340|emb|CBN55583.1| transcription antitermination protein NusG [Oscillatoria sp. PCC
6506]
Length = 211
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
RW+ VQV S CEK+ ++ R+ ++ + E+ IP + + + G + +S+ +
Sbjct: 26 EARWFAVQVASGCEKRVKANLEQRIQTLDVNDRILEVEIPQTPAIKLGKDGARRHSDEKV 85
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ +M ++ + +K+TP VI F+G + P P+++SE+E I Q
Sbjct: 86 FPGYVLVRMLMDEETWQIVKNTPNVINFVGAEQKRRYGRGRGHVKPLPLSNSEVERIFRQ 145
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ A PV V G+ V V GPF F G V V E++++ V + IFGR TPVEL
Sbjct: 146 TQEAE--PVVKVSMAAGDHVVVLSGPFKDFEGDVIEVSPERNKLKVLLSIFGRDTPVELE 203
Query: 170 YNQVEK 175
+NQV+K
Sbjct: 204 FNQVQK 209
>gi|307637877|gb|ADN80327.1| Transcription antitermination protein [Helicobacter pylori 908]
gi|317014591|gb|ADU82027.1| transcription antitermination protein NusG [Helicobacter pylori
Gambia94/24]
gi|325996474|gb|ADZ51879.1| Transcription antitermination protein [Helicobacter pylori 2018]
gi|325998063|gb|ADZ50271.1| Transcription antitermination protein [Helicobacter pylori 2017]
Length = 175
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|182412062|ref|YP_001817128.1| NusG antitermination factor [Opitutus terrae PB90-1]
gi|177839276|gb|ACB73528.1| NusG antitermination factor [Opitutus terrae PB90-1]
Length = 192
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 8/180 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ + S E K I LD + E+ +P+E V V+ G+K R+ +P
Sbjct: 11 AQWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYP 70
Query: 63 GYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
GYV I+ + + ++ +K+ VIGF+G G+ P+ + SEI+ I ++EAA
Sbjct: 71 GYVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG-GDRPAALRQSEIDEIRARIEAANG 129
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V V + VGE V ++DG FAS G + +D E+ ++ V V IFGR TPVEL Y QV++
Sbjct: 130 KEVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189
>gi|225351134|ref|ZP_03742157.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158590|gb|EEG71832.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 265
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ G++ + +I +P E V + K R PG
Sbjct: 80 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 139
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
YVLI+ + + +++T V GF+G + P+P++ E+ +M + A+
Sbjct: 140 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 199
Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
++ V V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 200 AANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 259
Query: 172 QVEKI 176
QVEK+
Sbjct: 260 QVEKL 264
>gi|189485233|ref|YP_001956174.1| transcription antitermination factor NusG [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|170287192|dbj|BAG13713.1| transcription antitermination factor NusG [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 176
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 108/177 (61%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V VYS E K + + ++ + +++I +P+E V+ V++ +K +R+F
Sbjct: 1 MANQWYVVHVYSGHEYKVKKGLEMTVANLNMQDTISQILVPTEEVIEVKQNKKKIKKRKF 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVS 119
+PGY+ ++ + + Y I++T V GFLG G P P++ E+E+I+N V +P
Sbjct: 61 YPGYIFVEMTINNSTYWLIRNTAGVTGFLG-GVKPIPISQFEVENILNTVANPDTSKPRP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+V FE E + + +GPF F GIV+ V+ E+ ++ V V IFGR TPVEL + QVEK+
Sbjct: 120 AVSFEKEENIRIIEGPFKHFIGIVEEVNHERGKLRVMVTIFGRHTPVELGFLQVEKM 176
>gi|317180930|dbj|BAJ58716.1| transcription antitermination protein NusG [Helicobacter pylori
F32]
Length = 176
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F VK D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVKEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|305664391|ref|YP_003860678.1| putative transcription antitermination protein [Maribacter sp.
HTCC2170]
gi|88708408|gb|EAR00644.1| putative transcription antitermination protein [Maribacter sp.
HTCC2170]
Length = 183
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I ++R G + ++ +P+E+V+ +R G+K+N ER +
Sbjct: 5 LEKKWYVVRAVSGQENKIKGYIESEVTRLGFSDYLEDVLVPTEKVIQIRNGKKINKERVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRP 117
FPGY++IKA + ++ H I+ VIGFLG G +P P+ +E+ ++ +V+ AV
Sbjct: 65 FPGYIMIKANLGGEMIHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELAVNTD 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 SIAIPFVHGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|317182454|dbj|BAJ60238.1| transcription antitermination protein NusG [Helicobacter pylori
F57]
Length = 176
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E+ ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVERRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|69250484|ref|ZP_00605157.1| transcription antitermination protein NusG [Enterococcus faecium
DO]
gi|68193940|gb|EAN08510.1| transcription antitermination protein NusG [Enterococcus faecium
DO]
Length = 166
Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats.
Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72
E K +I R + + + +P E+ V+ G++ + FPGYVL++ +MT
Sbjct: 1 GYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTFPGYVLVEMIMT 60
Query: 73 DKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
D ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ V EVGE V
Sbjct: 61 DASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQNDLEV--EVGEVV 118
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +G FA G V VD EK ++ V + +FGR T EL ++QV+KI
Sbjct: 119 KIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 165
>gi|32265865|ref|NP_859897.1| transcription antitermination protein NusG [Helicobacter hepaticus
ATCC 51449]
gi|32261914|gb|AAP76963.1| transcription termination factor NusG [Helicobacter hepaticus ATCC
51449]
Length = 171
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 4/175 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY +Q YS EK E+I + ++ + ++ +P+E ++ + K +R +P
Sbjct: 1 MEWYAIQTYSGSEKVVGEAIRNLIVQNQMQDRFGDVVVPTESIIETK---KKIVDRSLYP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV I+ + K++H I+ PKV F+G + P+P+++++I I+ +V P +
Sbjct: 58 GYVFIQVDLDTKLWHMIQSLPKVGRFIGESKKPTPLSEADIAKILEKVRNPSA-PKPKIS 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
FE GE V + DGPF +F G V+ D E ++ + V IFGR TPVE+ Y+QVEKI+
Sbjct: 117 FEQGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRSTPVEILYSQVEKII 171
>gi|306835182|ref|ZP_07468218.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49726]
gi|304568937|gb|EFM44466.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49726]
Length = 298
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG
Sbjct: 103 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 162
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 163 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGDAAPNE 222
Query: 108 NQVEAAVQRPVSSV------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ E V+ P V FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 223 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 282
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 283 RETPVELSPTEIERI 297
>gi|227502615|ref|ZP_03932664.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49725]
gi|227076655|gb|EEI14618.1| transcription antitermination protein NusG [Corynebacterium
accolens ATCC 49725]
Length = 301
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG
Sbjct: 106 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 165
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
YVL++A + D + I++TP V F+G N +PV ++ +
Sbjct: 166 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGEAAPNE 225
Query: 108 NQVEAAVQRPVSSV------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ E V+ P V FEVGE V + GP A+ + + +D E ++ V IFG
Sbjct: 226 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 285
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 286 RETPVELSPTEIERI 300
>gi|311748526|ref|ZP_07722311.1| transcription termination/antitermination factor NusG [Algoriphagus
sp. PR1]
gi|126577042|gb|EAZ81290.1| transcription termination/antitermination factor NusG [Algoriphagus
sp. PR1]
Length = 185
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 7/181 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+++V + EKK + +SR +D + E+ IPSE+V +R G+K ER FF
Sbjct: 3 EHKWYVLRVVAGQEKKTKTYLDNEISRQEIDEFIPEVLIPSEKVYEMRNGKKRVRERNFF 62
Query: 62 PGYVLIKAVM-TDKVYHTIKDTPKVIGFLGT-----GENPSPVTDSEIEHIMNQVEAAVQ 115
PGYVL+ A + + H I P VIGFLG+ + P P+ SE+ I+ +VE +
Sbjct: 63 PGYVLVNADLSNGEANHVITSIPGVIGFLGSSQGGASKTPEPLRQSEVNRILGKVEEIDE 122
Query: 116 -RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F VGE V V DGPF+ F G ++ V ++K +++V V IFGR TPVEL + QVE
Sbjct: 123 FAEKLDTPFIVGEAVKVMDGPFSGFTGTIEEVFDDKKKLNVMVKIFGRNTPVELNFIQVE 182
Query: 175 K 175
K
Sbjct: 183 K 183
>gi|296274146|ref|YP_003656777.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299]
gi|296098320|gb|ADG94270.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299]
Length = 175
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q +S E ++ RL+ D + ++ +P+E ++ V+KG K ER
Sbjct: 1 MAHLWYAIQTHSGSELTVKRALV-RLADEMADGKIADVLVPTEDLIEVKKGNKTIVERPL 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+P Y K + ++H I+ PKV F+G + P+P+++ +I I+++V
Sbjct: 60 YPAYAFAKIDLDTALWHRIQSMPKVGRFIGESKKPTPLSEKDINSILDKVNNRAA-AKPK 118
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V F+ GE V +++GPFA+FNGIV+ D + + V IFGR TPVE++Y QVE++V
Sbjct: 119 VSFDDGEMVRINEGPFANFNGIVEEFDIASGILKLNVSIFGRNTPVEISYTQVERVV 175
>gi|254779750|ref|YP_003057856.1| transcription antitermination protein NusG [Helicobacter pylori
B38]
gi|254001662|emb|CAX29843.1| Transcription antitermination protein NusG [Helicobacter pylori
B38]
Length = 176
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|288573182|ref|ZP_06391539.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568923|gb|EFC90480.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 184
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 103/178 (57%), Gaps = 4/178 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYIVQ Y+ E K ++ R++ G++ + ++ +P E V V+ G+ ++ FP
Sbjct: 7 KKWYIVQTYAGYENKVKANLEQRIATMGMEDKIFDVLVPVEEKVVVKDGKSKKVTKKLFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQRPV 118
YVL++ VM D+ ++ ++ TP V GF+G+G +P P++D E++ IM+++ RPV
Sbjct: 67 SYVLVEMVMEDQPWYVVRHTPGVTGFVGSGNHPIPLSDREVDDIMSKIGLSGSKKNNRPV 126
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ + V GPF G + V EK +V V +FGR T VE+ Y +++K+
Sbjct: 127 FEMDLKKGDVIKVKSGPFEGAVGPIIEVLPEKGKVKFSVSVFGRDTLVEIDYIEIDKL 184
>gi|312130984|ref|YP_003998324.1| transcription antitermination protein nusg [Leadbetterella
byssophila DSM 17132]
gi|311907530|gb|ADQ17971.1| transcription antitermination protein nusG [Leadbetterella
byssophila DSM 17132]
Length = 184
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V+ S EKK I +R L + E+ IP+E+++ VR G+K E+ FFPGY
Sbjct: 6 WYVVRAVSQQEKKIKNYIENEAARRKLTDFIPEVLIPTEKIIEVRNGKKRVREKNFFPGY 65
Query: 65 VLIKAVMTD-KVYHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIMNQVEAAVQRPVS 119
+L+ A + + +V H IK P VIGFLG P P+ SE+ I+ +A + +
Sbjct: 66 ILVNADLNNGEVLHLIKSIPGVIGFLGKNGGASIEPEPLRQSEVNRILGVQDAPQEEAID 125
Query: 120 S-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V F GE V V DGPF F G V+ + +EK ++ V V IFGR TPVEL Y QVEK+
Sbjct: 126 AGVSFVTGETVKVIDGPFNGFEGTVEEIFDEKKKLSVSVKIFGRSTPVELGYLQVEKL 183
>gi|301168471|emb|CBW28061.1| putative transcription antitermination protein [Bacteriovorax
marinus SJ]
Length = 211
Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+I + + E K ++ R+ +EI +P E V S GRK +++ FPG
Sbjct: 39 KWFIAKTLTGQEGKVQRALRERIVNYKQTEFFSEIMVPEETVTSHANGRKRTIKKKLFPG 98
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLIK +M D +H +KDT K+ GF+ GT + P+P++D E ++ Q ++ ++V
Sbjct: 99 YVLIKMIMNDNTWHLVKDTDKITGFVGGTSDKPAPISDEEAAYMTGQQGEGFKKSKTTVD 158
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V V +GPFASF G V+ + EK ++ V V IFGR TPVEL + Q+EK
Sbjct: 159 FAEGETVKVIEGPFASFVGTVEAIS-EKGKIRVNVSIFGRPTPVELDFTQIEK 210
>gi|300871171|ref|YP_003786043.1| transcription antitermination protein NusG [Brachyspira pilosicoli
95/1000]
gi|300688871|gb|ADK31542.1| transcription antitermination protein, NusG [Brachyspira pilosicoli
95/1000]
Length = 193
Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 70/184 (38%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV E K E + R+ +G+ LV +I IPSE V + G+KV E F+PG
Sbjct: 10 RWYIVHTQHGYENKVRERLEKRIKENGMSDLVVDIYIPSETVQKNKNGKKVTKEEFFYPG 69
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQ 115
YVL+K VM D ++ TP V GF+G+ P+P++++++ I EA +
Sbjct: 70 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFEDREAKNK 129
Query: 116 RPVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + FE+GE+V V DGPF NG+++N++ +K +V V++ IFGR TP EL +N+
Sbjct: 130 NDINELIGMEFEIGEKVQVIDGPFNGLNGLIENINADKGKVTVKIEIFGRSTPTELDFNK 189
Query: 173 VEKI 176
V+K+
Sbjct: 190 VKKL 193
>gi|288801076|ref|ZP_06406532.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 299 str. F0039]
gi|288332010|gb|EFC70492.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 299 str. F0039]
Length = 181
Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++ S E K E I + + L V+++ IP E+ S+R G++V +E+
Sbjct: 6 KNWYVLRAVSGKEAKVKEYIEAEIKHNTLLSSYVSQVLIPLEKHASLRNGKRVITEKISL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++AV+ V HT++ P V+GFLG +NPSPV +EI ++ E ++
Sbjct: 66 PGYVFVEAVLKGDVAHTLRFIPNVLGFLGGLDNPSPVPQAEINRMLGTAEETEVADEINI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYEVNETVKVTDGPFSGFSGVIEEVNSEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|255994046|ref|ZP_05427181.1| transcription termination/antitermination factor NusG [Eubacterium
saphenum ATCC 49989]
gi|255993714|gb|EEU03803.1| transcription termination/antitermination factor NusG [Eubacterium
saphenum ATCC 49989]
Length = 198
Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E+K ++I + G+ L+ +I IP+E V ++ G++ + + + F
Sbjct: 31 ARWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFI 90
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+LIK +T++ ++ +++T V GF+G G+ P P+T E+ + +++ + ++
Sbjct: 91 GYILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEVRRL------GIEKVIVNLK 144
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ + V +GPF NG V VDEE + ++ +FGR TPV+L Y Q++K+
Sbjct: 145 IKPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDKL 198
>gi|319953894|ref|YP_004165161.1| transcription antitermination protein nusg [Cellulophaga algicola
DSM 14237]
gi|319422554|gb|ADV49663.1| transcription antitermination protein nusG [Cellulophaga algicola
DSM 14237]
Length = 183
Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I ++R G + E+ +P+E+V+ VR G+KVN ER +
Sbjct: 5 LDKKWYVVRAVSGQENKIKGYIESEVARLGFGDYLDEVLVPTEKVIQVRNGKKVNKERVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRP 117
FPGY+++KA + +V H I+ VIGFLG G +P P+ +E+ ++ +V+ V
Sbjct: 65 FPGYIMVKANLGGEVAHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELTVTTE 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 NVAIPFVMGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|225012649|ref|ZP_03703084.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A]
gi|225003182|gb|EEG41157.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A]
Length = 184
Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K + I +SR G DHLV +I +P+E+V+ +R G+K+N ER +FP
Sbjct: 8 KKWYVVRAVSGQEAKIKDYIMSEISRFGYDHLVEDILVPTEKVIQIRNGKKINKERVYFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY+++KA +T ++ H IK VIGFLG G P P+ SE+ ++ +V+ A+
Sbjct: 68 GYIMVKANLTGELPHIIKSVTNVIGFLGETKGGEPVPLRVSEVNRMLGKVDELALATEHV 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F GE V V DGPF F G ++NV+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 128 SIPFTEGENVKVIDGPFNGFTGAIENVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184
>gi|315452935|ref|YP_004073205.1| transcription antitermination protein nusG [Helicobacter felis ATCC
49179]
gi|315131987|emb|CBY82615.1| putative transcription antitermination protein nusG [Helicobacter
felis ATCC 49179]
Length = 177
Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59
M WY +Q YS E+ ++I + + + V E+ +P+E V+ + +K + +ER
Sbjct: 1 MGMEWYAIQTYSGSEQAVKKAIENMVHENNIKDRVQEVIVPTEDVIELSKKSKNKVTERS 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGYV IK + ++H I+ P+V F+G + P+P++D++I +I+ ++ P
Sbjct: 61 LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGESKKPTPLSDADIGNILEKITNRAA-PKP 119
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+++E GE V + +GPFA+F V+ D E ++ + V IFGR T +E+ Y+QVEKI+
Sbjct: 120 KIYYEKGEVVRIIEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTLIEILYSQVEKII 177
>gi|300742100|ref|ZP_07072121.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa M567]
gi|300381285|gb|EFJ77847.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa M567]
Length = 255
Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 75 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 135 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEDQQSKGLPTP 194
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V GPF + + + E +V + +F R TPV L +NQ+EK
Sbjct: 195 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 254
Query: 176 I 176
I
Sbjct: 255 I 255
>gi|15612191|ref|NP_223843.1| transcription antitermination protein NusG [Helicobacter pylori
J99]
gi|11387011|sp|Q9ZK20|NUSG_HELPJ RecName: Full=Transcription antitermination protein nusG
gi|4155723|gb|AAD06704.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ Y+QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKII 176
>gi|229542219|ref|ZP_04431279.1| NusG antitermination factor [Bacillus coagulans 36D1]
gi|229326639|gb|EEN92314.1| NusG antitermination factor [Bacillus coagulans 36D1]
Length = 177
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E + V+ +K +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEELEVKNEKKKVVKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G G P+P+ EI I+ ++ ++
Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGGGSKPTPLLPEEINTILKRM--GMEEK 118
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V FE+GE V V +GPFA+F G + +D +K R V V +FGR TPVEL + Q++KI
Sbjct: 119 RADVDFEIGETVTVKEGPFANFAGKIVEMDRDKGRAKVMVNMFGRDTPVELVFEQIDKI 177
>gi|218133816|ref|ZP_03462620.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC
43243]
gi|217991191|gb|EEC57197.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC
43243]
Length = 194
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRF 60
PRWY+V YS E K ++SI ++ L+ + ++ +P E V +R G K ER+
Sbjct: 18 EPRWYVVHTYSGYENKVMDSISKTIANRHLEDQILDVRVPVETVYELRANGTKKAVERKI 77
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVS 119
FPGYVL+ VM + ++ +++ V GF+G G P P+T+ E++ + +++
Sbjct: 78 FPGYVLVNMVMNEDTWYVVRNIRGVTGFVGPGSKPVPLTEEEMKPYGLTSNDSSESDKNV 137
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V +VG+ V V+ G +A +++V+E + V + V +F R TPVE+++++V+K+
Sbjct: 138 VVNLKVGDIVTVTGGAWAGSVKAIQSVNESRQTVTINVDMFSRETPVEISFSEVKKM 194
>gi|224542348|ref|ZP_03682887.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM
15897]
gi|224524730|gb|EEF93835.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM
15897]
Length = 199
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K E++ R+ GL +++ I IP ++ G+KVN FP
Sbjct: 23 RQWYVVNTYSGHENKVKENLEKRVESMGLQNILFNIVIPEHVETEIKNGKKVNKTVNMFP 82
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +MTD+ ++ +++TP V GF+G+ G P PV E++ I+ + +Q
Sbjct: 83 GYVLVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVNKRELDPILKSM--GIQTTAV 140
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F G+ V V GPFAS +G V+++D+EK V V G +TP+++ Q++KI
Sbjct: 141 EVDFVEGDYVEVLAGPFASKSGKVESIDKEKETATVLVDFLGNLTPIDMELIQLKKI 197
>gi|293189019|ref|ZP_06607751.1| transcription termination/antitermination factor NusG [Actinomyces
odontolyticus F0309]
gi|292822050|gb|EFF80977.1| transcription termination/antitermination factor NusG [Actinomyces
odontolyticus F0309]
Length = 256
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K
Sbjct: 68 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ------VEAA 113
PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ EAA
Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187
Query: 114 VQRPVS----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+P FEVGE V V+DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 248 FDQVEKL 254
>gi|154508676|ref|ZP_02044318.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC
17982]
gi|153798310|gb|EDN80730.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC
17982]
Length = 256
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K
Sbjct: 68 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ------VEAA 113
PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ EAA
Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187
Query: 114 VQRPVS----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+P FEVGE V V+DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 248 FDQVEKL 254
>gi|227522460|ref|ZP_03952509.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC
8290]
gi|227090412|gb|EEI25724.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC
8290]
Length = 183
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 6/177 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRF 60
+WY++ YS E K ++ R G+ L+ I +P +E +KG+ +
Sbjct: 6 EKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRIVVPETEEHEVDKKGKDKVKMDKT 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + +
Sbjct: 66 FPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRH- 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ VG+ V + DG F G V +D EK R+ V + +FGR T EL +NQV+
Sbjct: 125 -EDLDVNVGDSVKIVDGAFTGLKGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQVD 180
>gi|320101665|ref|YP_004177256.1| NusG antitermination factor [Isosphaera pallida ATCC 43644]
gi|319748947|gb|ADV60707.1| NusG antitermination factor [Isosphaera pallida ATCC 43644]
Length = 285
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++V S+ E E++ R+ GL+ ++ +P + V +R +K ER+ +PGY
Sbjct: 105 WYVLKVQSSREDSIREAMLKRVRIQGLERFFGDVVVPKRKEVEIRNNKKKIVERKTYPGY 164
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEAAVQ 115
+L++ + ++ + TI++TP V F+G +P+ ++ +E++ I+ EA+ +
Sbjct: 165 LLVQMELNERTWFTIRETPGVGDFVGPPGSPTKISPAEVQQILGTPSADEKVGIEEASAE 224
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE G+RV + DGPF +F G V+ V + V V +VIF R TPV+L Y Q+E+
Sbjct: 225 PVKPKIDFERGDRVKIKDGPFENFEGTVEEVVPARGVVKVMIVIFNRPTPVDLEYWQIER 284
Query: 176 I 176
I
Sbjct: 285 I 285
>gi|210135361|ref|YP_002301800.1| transcription antitermination protein NusG [Helicobacter pylori
P12]
gi|210133329|gb|ACJ08320.1| transcription antitermination protein NusG [Helicobacter pylori
P12]
Length = 176
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ PKV F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLPKVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|306823644|ref|ZP_07457019.1| transcription termination/antitermination factor NusG
[Bifidobacterium dentium ATCC 27679]
gi|304553351|gb|EFM41263.1| transcription termination/antitermination factor NusG
[Bifidobacterium dentium ATCC 27679]
Length = 270
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ GL+ + +I +P E V + K R PG
Sbjct: 85 KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPG 144
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + + +++T V GF+G + P+P++ E+ +M +
Sbjct: 145 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 204
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 205 AAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 264
Query: 172 QVEKI 176
QVEK+
Sbjct: 265 QVEKL 269
>gi|212716698|ref|ZP_03324826.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM
16992]
gi|212660402|gb|EEB20977.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM
16992]
Length = 269
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ G++ + +I +P E V + K R PG
Sbjct: 84 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 143
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
YVLI+ + + +++T V GF+G ++P+P++ E+ +M + A+
Sbjct: 144 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDKP 203
Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
++ V V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 204 AANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 263
Query: 172 QVEKI 176
QVEK+
Sbjct: 264 QVEKL 268
>gi|320333435|ref|YP_004170146.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211]
gi|319754724|gb|ADV66481.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211]
Length = 190
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + +++ R + + ++ P+E V +++G +K +R
Sbjct: 1 MSIEWYAVHTYVGQEDRVEDNLIKRARAYSMYGLKIFQVLQPTEEAVELKEGGKKETVKR 60
Query: 59 RFFPGYVLIKAVMTDK--------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D+ + ++ TP V GF+GT P P++ E++ ++ V
Sbjct: 61 KMFPGYVFVQMDIEDEHSPGELGESWEVVRGTPGVTGFVGTTTRPVPLSPEEVQRLLASV 120
Query: 111 EAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
A + P V F+ G+ V V+ GPFA F+G+V V+ +++V V V IFGR TPV
Sbjct: 121 GVAAKATEVAPRIKVNFKEGDMVRVTSGPFADFSGVVSEVNAAQAKVKVLVSIFGRETPV 180
Query: 167 ELAYNQVEK 175
EL ++QV +
Sbjct: 181 ELDFSQVSR 189
>gi|313204187|ref|YP_004042844.1| transcription antitermination protein nusg [Paludibacter
propionicigenes WB4]
gi|312443503|gb|ADQ79859.1| transcription antitermination protein nusG [Paludibacter
propionicigenes WB4]
Length = 182
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K E I + S L V ++ IP+E+V +R G+K+ ER PG
Sbjct: 8 KWYVMRAISGKENKVKEYIDAEIKNSDLGQFVAQVLIPTEKVYQIRNGKKITKERSCMPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
YVLI+A + ++ H +++TP VIGFLG N P+P+ SE+ I+ V+ +
Sbjct: 68 YVLIEAYLIGEISHRLRNTPNVIGFLGEKNNVPTPIRPSEVNRILGSVDELQETAEEMLT 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V V GPF+ F+G+++ V+ EK ++ V V+IFGR TP+ELA+ QVEK
Sbjct: 128 PFYVGENVKVIFGPFSGFSGLIEEVNSEKKKLKVMVMIFGRKTPLELAFTQVEK 181
>gi|282896127|ref|ZP_06304153.1| NusG antitermination factor [Raphidiopsis brookii D9]
gi|281199045|gb|EFA73920.1| NusG antitermination factor [Raphidiopsis brookii D9]
Length = 209
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + +E +
Sbjct: 24 EARWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKV 83
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ +M+D + +K+T VI F+G + P P+++SE+E I Q
Sbjct: 84 FPGYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSSRSRGHVKPVPLSNSEVERIFKQ 143
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 144 T--TEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 201
Query: 170 YNQVEK 175
+NQV+K
Sbjct: 202 FNQVQK 207
>gi|171741354|ref|ZP_02917161.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC
27678]
gi|283455289|ref|YP_003359853.1| putative transcription antitermination protein nusG
[Bifidobacterium dentium Bd1]
gi|171276968|gb|EDT44629.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC
27678]
gi|283101923|gb|ADB09029.1| putative transcription antitermination protein nusG
[Bifidobacterium dentium Bd1]
Length = 270
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS EK+ ++ R++ GL+ + +I +P E V + K R PG
Sbjct: 85 KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPG 144
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
YVLI+ + + +++T V GF+G + P+P++ E+ +M +
Sbjct: 145 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 204
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N
Sbjct: 205 AAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 264
Query: 172 QVEKI 176
QVEK+
Sbjct: 265 QVEKL 269
>gi|282899203|ref|ZP_06307177.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505]
gi|281195886|gb|EFA70809.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505]
Length = 209
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + +E +
Sbjct: 24 EARWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKV 83
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ +M+D + +K+T VI F+G + P P+++SE+E I Q
Sbjct: 84 FPGYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSGRSRGHVKPVPLSNSEVERIFKQ 143
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 144 T--TEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 201
Query: 170 YNQVEK 175
+NQV+K
Sbjct: 202 FNQVQK 207
>gi|306830215|ref|ZP_07463398.1| transcription termination/antitermination factor NusG
[Streptococcus mitis ATCC 6249]
gi|304427582|gb|EFM30679.1| transcription termination/antitermination factor NusG
[Streptococcus mitis ATCC 6249]
Length = 183
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+K E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 129 DIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMMISMFGNDTIAEVNLNQIAEL 183
>gi|317011405|gb|ADU85152.1| transcription antitermination protein NusG [Helicobacter pylori
SouthAfrica7]
Length = 175
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNIRGRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 63 YVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 122 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175
>gi|288929390|ref|ZP_06423235.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 317 str. F0108]
gi|288329492|gb|EFC68078.1| transcription termination/antitermination factor NusG [Prevotella
sp. oral taxon 317 str. F0108]
Length = 181
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++ S E K E I L + + V ++ IP E+ S+R G++V E+
Sbjct: 6 KNWYVLRAVSGKEAKVKEYIEAELKHNTMLQSHVFQVLIPMEKQASLRNGKRVEKEKISL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++A + V HT++ P V+GFLG +NPSPV ++I ++ E +
Sbjct: 66 PGYVFVEADLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQADINRMLGAAENTELENDIDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 126 PYSVDETVKVTDGPFSGFMGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|28572873|ref|NP_789653.1| transcription antitermination protein NusG [Tropheryma whipplei
TW08/27]
gi|28411006|emb|CAD67391.1| transcription antitermination protein NusG [Tropheryma whipplei
TW08/27]
Length = 205
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V + E++A ++ R+ D + ++ +P E VV +R G++ R PG
Sbjct: 24 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------ 117
YVL++ + + + +++TP + GF+G P P++ E+ ++ + Q
Sbjct: 84 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 143
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VS V EVGE V + G FA G + + E R+ V + +F R TPVELA++QVEK
Sbjct: 144 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 203
>gi|15807041|ref|NP_295770.1| transcription antitermination protein NusG [Deinococcus radiodurans
R1]
gi|18203424|sp|Q9RSS6|NUSG_DEIRA RecName: Full=Transcription antitermination protein nusG
gi|6459839|gb|AAF11597.1|AE002041_1 transcription antitermination protein NusG [Deinococcus radiodurans
R1]
Length = 190
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKG-RKVNSER 58
M+ WY V Y E + + + R R G+ + ++ P E V +++G +KVN +R
Sbjct: 1 MSIEWYAVHTYVGQEDRVQDQLMDRARRLGMYRTKIFQVLQPEEEAVEIQEGGKKVNVKR 60
Query: 59 RFFPGYVLIKAVMTD--------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ FPGYV ++ + D + + ++ T V GF+GT P P++ E++ ++ V
Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLTSV 120
Query: 111 EAA-----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
A + P V + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP
Sbjct: 121 GVAAQPVVEEAPRIKVDLKAGDMVRVTSGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180
Query: 166 VELAYNQVEK 175
VEL ++QV K
Sbjct: 181 VELDFSQVAK 190
>gi|284928831|ref|YP_003421353.1| transcription antitermination protein NusG [cyanobacterium UCYN-A]
gi|284809290|gb|ADB94995.1| transcription antitermination protein nusG [cyanobacterium UCYN-A]
Length = 206
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 70/184 (38%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + +I IP + VRK G + E + FP
Sbjct: 23 RWYAVQVASGCEKRVKSNLEQRVQTLDTAGNILQIQIPKAPTIKVRKDGSRQQGEEKVFP 82
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GY+L+K +M D + IK TP VI F+G+ + P P++ SE+E I Q E
Sbjct: 83 GYILVKMIMDDDTWLVIKSTPNVINFVGSEQRRASGRGRGHVKPLPLSPSEVERIFRQTE 142
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P+ + EVG+++ V GPF F G V V E++++ + IFGR TPVEL +N
Sbjct: 143 RSE--PIIKIDMEVGDKIVVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFN 200
Query: 172 QVEK 175
QVEK
Sbjct: 201 QVEK 204
>gi|317178500|dbj|BAJ56288.1| transcription antitermination protein NusG [Helicobacter pylori
F30]
Length = 176
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER +PG
Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK + ++H I+ +V F+G + P+P+++++I HI+ ++ P +FF
Sbjct: 64 YVFIKVDLDTVLWHKIQSLSRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFF 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
E GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 123 EQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
>gi|225621220|ref|YP_002722478.1| transcription antitermination protein NusG [Brachyspira
hyodysenteriae WA1]
gi|225216040|gb|ACN84774.1| transcription antitermination protein NusG [Brachyspira
hyodysenteriae WA1]
Length = 195
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 70/184 (38%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYIV E K E I R +G+ L+ +I IPSE V S + G+KV+ E F+PG
Sbjct: 12 KWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQ 115
YVL+K VM D ++ TP V GF+G+ P+P+++S++ I E +
Sbjct: 72 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFENREDKSK 131
Query: 116 RPVSSV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + F++GE+V V DGPF NGI++N++ +K RV V++ IFGR TP EL +++
Sbjct: 132 TGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTPTELEFSK 191
Query: 173 VEKI 176
V+K+
Sbjct: 192 VKKL 195
>gi|88802462|ref|ZP_01117989.1| putative transcription antitermination protein [Polaribacter
irgensii 23-P]
gi|88781320|gb|EAR12498.1| putative transcription antitermination protein [Polaribacter
irgensii 23-P]
Length = 183
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ E K I ++R GL V+++ +P+E+V+ ++ G+K+N E+ +FP
Sbjct: 7 MKWYVVRAIGGQENKVKAYIETEIARLGLSDFVSQVIVPTEKVIQIKDGKKINKEKVYFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY++++A ++ +V H IK VIGFLG G P P+ +E+ ++ +V+ ++Q
Sbjct: 67 GYIMVEANLSGEVPHVIKGITGVIGFLGEVKGGAPVPMRKAEVNRMLGKVDELSIQDENV 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F++GE V V DGPF F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 AIPFDIGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183
>gi|226226256|ref|YP_002760362.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca
T-27]
gi|226089447|dbj|BAH37892.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca
T-27]
Length = 181
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLS---RSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
+ RWY +Q S E K I ++ D L+ + +P+++VV ++ G+KV E
Sbjct: 2 LEHRWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVE 61
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
R+ FPGYVL++ V + H I VI F+G ++P P+ D E+ ++ Q + A + P
Sbjct: 62 RKIFPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQADPADETP 121
Query: 118 V-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V + F VG+ V +++GPFA FNG V+ + +K +V V V +FGR T VEL Y Q+
Sbjct: 122 VREEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179
>gi|260909715|ref|ZP_05916409.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
oral taxon 472 str. F0295]
gi|260636140|gb|EEX54136.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
oral taxon 472 str. F0295]
Length = 181
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++ S E K E I L + L V ++ IP E+ S+R G++V E+
Sbjct: 6 KNWYVLRAVSGKEAKVKEYIEAELKHNTLLQSHVFQVLIPMEKQASLRNGKRVEKEKISL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++A + V HT++ P V+GFLG +NPSPV S+I ++ E ++
Sbjct: 66 PGYVFVEANLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQSDINRMLGAAENTELENDINI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 126 PYSVDETVKVTDGPFSGFTGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179
>gi|291334048|gb|ADD93721.1| transcription termination/antitermination factor NusG [uncultured
marine bacterium MedDCM-OCT-S05-C114]
Length = 192
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 9/181 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY +Q SN E K + ++EI +P E V V+ G+K +R+F+
Sbjct: 9 ARWYALQCLSNHEDKVKRYLTKYKEDDEEFASCLSEILVPIETVSEVKNGKKKQRDRKFY 68
Query: 62 PGYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
PGYV ++ + D+V ++ IK+T VI F+G ENP+P+ D EI I+ QV A
Sbjct: 69 PGYVFVEMKLFDQVGNLKKKPWYKIKETDGVINFIG-RENPTPLADDEIGRILKQVNEAE 127
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ V V F VGE V + DGPF + G ++ +D +K + V V IFGR TPVEL + QVE
Sbjct: 128 GKEVPKVKFAVGEVVKILDGPFLNLTGEIEEIDPQKGTLKVSVSIFGRFTPVELEFWQVE 187
Query: 175 K 175
K
Sbjct: 188 K 188
>gi|325285445|ref|YP_004261235.1| NusG antitermination factor [Cellulophaga lytica DSM 7489]
gi|324320899|gb|ADY28364.1| NusG antitermination factor [Cellulophaga lytica DSM 7489]
Length = 183
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+V+ S E K I ++R G + ++ +P+E+VV VR G+K+N E+ +
Sbjct: 5 LEKKWYVVRAVSGQENKIKGYIESEVARLGFSDYLEDVLVPTEKVVQVRNGKKINKEKVY 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRP 117
FPGY+++KA + ++ H I+ VIGFLG G +P P+ SE+ ++ +V+ AV
Sbjct: 65 FPGYIMVKANLGGEMVHIIRSITNVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVTTD 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 SVAIPFVLGETIKVVDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183
>gi|227487148|ref|ZP_03917464.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227541685|ref|ZP_03971734.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227092806|gb|EEI28118.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227182500|gb|EEI63472.1| transcription antitermination protein NusG [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 255
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+Q YS E K ++ R +D + +I +P E V +R G+K +++ PGY
Sbjct: 66 WYIIQTYSGYENKVKTNLTQRAENLEVDEYIHDIVVPVEEVTEMRDGKKKIVKKKLLPGY 125
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
VL++ M D V+ ++ TP V F+G +PV ++ + +A
Sbjct: 126 VLVRMEMNDSVWSVVRGTPGVTSFVGNEGQATPVKPKDVAKFLMPQQAVEEQAADAEGDT 185
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
A ++ V FEVGE V + G A+ + + ++D + ++H V IFGR TPVE
Sbjct: 186 VVAAPAAEKKPVEVDFEVGESVTILSGALATVSATISDIDRDSGKLHALVSIFGRDTPVE 245
Query: 168 LAYNQVEKI 176
L ++QVEKI
Sbjct: 246 LTFDQVEKI 254
>gi|227549794|ref|ZP_03979843.1| transcription antitermination protein NusG [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078049|gb|EEI16012.1| transcription antitermination protein NusG [Corynebacterium
lipophiloflavum DSM 44291]
Length = 311
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 24/198 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R+ ++ + ++ +P E+ + ++ G++ R+ PG
Sbjct: 114 QWYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQAIELKDGKRKIVNRKLLPG 173
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++ M D + +++TP V F+G N +PV ++ +
Sbjct: 174 YVLVRMDMNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKEPTVVGDASQKSA 233
Query: 110 ----------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ P + +EVGE V + G A+ + + +D E ++ V I
Sbjct: 234 VNAEGETVIAMPEQEVAPKLAHDYEVGEAVTILTGALATVSATISEIDPESGKIQALVSI 293
Query: 160 FGRVTPVELAYNQVEKIV 177
FGR TPVEL +Q+E+I+
Sbjct: 294 FGRETPVELTADQIERIM 311
>gi|311112018|ref|YP_003983240.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa ATCC 17931]
gi|310943512|gb|ADP39806.1| transcription termination/antitermination factor NusG [Rothia
dentocariosa ATCC 17931]
Length = 242
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 62 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 121
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 122 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEEQQSKGLPTP 181
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V GPF + + + E +V + +F R TPV L +NQ+EK
Sbjct: 182 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 241
Query: 176 I 176
I
Sbjct: 242 I 242
>gi|167041784|gb|ABZ06526.1| putative transcription termination factor nusG [uncultured marine
microorganism HF4000_093M11]
Length = 249
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYI+Q +S E + ++I +L GL+ LV EI IPSE V+ + G+K +++FP
Sbjct: 73 AKWYILQAFSGYEGRVEQTIQEKLKIEGLEDLVNEIFIPSEDVIRTKDGKKRKVNQKYFP 132
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI +T ++H + + +V GF+G + P P+ +SE+E I +QV Q+ S
Sbjct: 133 GYVLIHMELTPVLWHLLMNVNRVSGFIGGTQKNPLPLDESELETIRSQVNERFQQKASED 192
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F +G++V +++G F +F+G++ ++ E+ ++ V V IFGR TPVE+ + +V+ +V
Sbjct: 193 EFSLGQKVTITEGSFGNFSGVIDEINLERRKLKVLVSIFGRPTPVEVEFEKVKHVV 248
>gi|119511572|ref|ZP_01630680.1| transcription antitermination protein NusG [Nodularia spumigena
CCY9414]
gi|119463807|gb|EAW44736.1| transcription antitermination protein NusG [Nodularia spumigena
CCY9414]
Length = 203
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 14/186 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
RWY VQV S CEK+ ++ R+ + + ++ IP V +RK G + ++E +
Sbjct: 18 EARWYAVQVASGCEKRVKTNLEQRIQTFDVSDKIVQVEIPHTPAVKIRKDGSRQHTEEKV 77
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQ 109
FPGYVL++ VM D + +++T VI F+G + P P+ SE+E I Q
Sbjct: 78 FPGYVLVRMVMEDDTWQVVRNTSHVINFVGAEQKRGGSKSRGHVKPVPLGASEVERIFKQ 137
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ Q P+ + G+++ V GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 138 T--SEQEPIVKIDMAAGDKIVVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELE 195
Query: 170 YNQVEK 175
+NQVEK
Sbjct: 196 FNQVEK 201
>gi|16330012|ref|NP_440740.1| transcription antitermination protein NusG [Synechocystis sp. PCC
6803]
gi|548397|sp|P36265|NUSG_SYNY3 RecName: Full=Transcription antitermination protein nusG
gi|311688|emb|CAA51202.1| nusG [Synechocystis sp. PCC 6803]
gi|1652499|dbj|BAA17420.1| transcription antitermination protein; NusG [Synechocystis sp. PCC
6803]
Length = 205
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
W+ VQV S CEK+ ++ R+ + + ++ IP +V +RK G +V E + FPG
Sbjct: 23 WFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFPG 82
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVEA 112
YVLI+ +M D + +K+TP VI F+G+ + P P++ E+E I V+
Sbjct: 83 YVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVDE 142
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
Q PV + E+G+ + V GPF F G V V E+S++ + IFGR TPVEL + Q
Sbjct: 143 --QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQ 200
Query: 173 VEK 175
VEK
Sbjct: 201 VEK 203
>gi|110639547|ref|YP_679756.1| transcription antitermination protein nusG [Cytophaga hutchinsonii
ATCC 33406]
gi|110282228|gb|ABG60414.1| transcription antitermination protein nusG [Cytophaga hutchinsonii
ATCC 33406]
Length = 185
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V+ S EKK + ++R L V ++ IP+E+V +R G+K ER FFPGY
Sbjct: 6 WYVVRAVSGQEKKVKSYLENEITRQRLVDYVPQVLIPAEKVYEMRNGKKRVRERSFFPGY 65
Query: 65 VLIKAVMT-DKVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEAA-VQRP 117
VLI+A ++ + H I P V+GFLG E P P+ SE+ I+ V+ + V
Sbjct: 66 VLIQADLSHGEAAHVITSIPGVLGFLGASEGAASKKPIPLRQSEVNRILGTVDDSQVGEV 125
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F VGE V V DGPF+ F G V+ V EEK +++V V IFGR TPVEL Y QVEK+
Sbjct: 126 VLETPFVVGETVKVMDGPFSGFTGSVEEVFEEKKKLNVMVKIFGRNTPVELNYIQVEKL 184
>gi|307702534|ref|ZP_07639487.1| transcription termination/antitermination factor NusG
[Streptococcus oralis ATCC 35037]
gi|331265605|ref|YP_004325235.1| transcription antitermination protein NusG [Streptococcus oralis
Uo5]
gi|307623880|gb|EFO02864.1| transcription termination/antitermination factor NusG
[Streptococcus oralis ATCC 35037]
gi|326682277|emb|CBY99894.1| transcription antitermination protein NusG [Streptococcus oralis
Uo5]
Length = 178
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+K E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQIAEL 178
>gi|312892230|ref|ZP_07751727.1| transcription antitermination protein nusG [Mucilaginibacter
paludis DSM 18603]
gi|311295360|gb|EFQ72532.1| transcription antitermination protein nusG [Mucilaginibacter
paludis DSM 18603]
Length = 180
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I ++R G+ HLV ++ IP E+ +R G+K+ ER FFPG
Sbjct: 6 KWYVVRAISGKEKKVKQYIDAEINRLGISHLVPQVLIPMEKYYQMRDGKKIAKERNFFPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVL++A + ++ H IK+ VIGFLG N P+ +E+ I+ +V E + Q +V
Sbjct: 66 YVLMEAALDGELEHIIKNINSVIGFLGDKAGNAIPLRQAEVNRILGKVDEMSEQGETMNV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +GE V V DGPF F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 PYYIGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRRTPLELNYMQVEK 179
>gi|255534434|ref|YP_003094805.1| Transcription antitermination protein NusG [Flavobacteriaceae
bacterium 3519-10]
gi|255340630|gb|ACU06743.1| Transcription antitermination protein NusG [Flavobacteriaceae
bacterium 3519-10]
Length = 180
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + G + VT++ IP E+V+ ++ G+KV E+ ++PG
Sbjct: 5 KWYVLKSISGQENKVKTYIENEMKHHGFEAFVTQVVIPMEKVIQLKNGKKVPKEKPYYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
Y++++A + ++ H IK+ P VI FL G +P P+ SE+ ++ +++ + V S
Sbjct: 65 YLMVEANLVGEIPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFAVETS 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F VGE V V DGPF FNG ++ + E+K +V V V+IFGR TP+EL+Y QVEK+
Sbjct: 125 IPFVVGENVKVIDGPFNGFNGTIEKLHEDKKKVEVSVMIFGRKTPMELSYMQVEKV 180
>gi|28493682|ref|NP_787843.1| transcription antitermination protein [Tropheryma whipplei str.
Twist]
gi|28476724|gb|AAO44812.1| transcription antitermination protein [Tropheryma whipplei str.
Twist]
Length = 217
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V + E++A ++ R+ D + ++ +P E VV +R G++ R PG
Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------ 117
YVL++ + + + +++TP + GF+G P P++ E+ ++ + Q
Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 155
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VS V EVGE V + G FA G + + E R+ V + +F R TPVELA++QVEK
Sbjct: 156 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 215
>gi|241895135|ref|ZP_04782431.1| transcriptional antiterminator NusG [Weissella paramesenteroides
ATCC 33313]
gi|241871631|gb|EER75382.1| transcriptional antiterminator NusG [Weissella paramesenteroides
ATCC 33313]
Length = 184
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ Y+ E + ++ R+ G+ + + +P + V + G + FP
Sbjct: 8 KQWYVLHTYAGYENRVKSNLESRIETMGMTDYIFRVLVPEQEVEVEKDGETKIVKENDFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY L++ +MTD+ ++ +++TP V GFLG+ G P P+ E++ ++ ++ V+R V
Sbjct: 68 GYALVEMIMTDEAWYVVRNTPGVTGFLGSHGGGSKPVPLLPEEVDDMLARMNL-VERKVE 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V V G FA G + +D+E V + + +FGR TP ++++N ++ +
Sbjct: 127 HLDVVVGDSVDVVSGSFAGQEGEITAIDDEHQEVTILINMFGRDTPTQISFNDIKPV 183
>gi|270293432|ref|ZP_06199640.1| transcription antitermination protein NusG [Streptococcus sp. M143]
gi|293364534|ref|ZP_06611257.1| transcription antitermination protein NusG [Streptococcus oralis
ATCC 35037]
gi|315611917|ref|ZP_07886835.1| transcription termination/antitermination factor NusG
[Streptococcus sanguinis ATCC 49296]
gi|322376154|ref|ZP_08050662.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C300]
gi|270278094|gb|EFA23943.1| transcription antitermination protein NusG [Streptococcus sp. M143]
gi|291316946|gb|EFE57376.1| transcription antitermination protein NusG [Streptococcus oralis
ATCC 35037]
gi|315315906|gb|EFU63940.1| transcription termination/antitermination factor NusG
[Streptococcus sanguinis ATCC 49296]
gi|321278836|gb|EFX55881.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C300]
Length = 183
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+K E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 129 DIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQIAEL 183
>gi|158336005|ref|YP_001517179.1| transcription antitermination protein NusG [Acaryochloris marina
MBIC11017]
gi|158306246|gb|ABW27863.1| transcription termination/antitermination factor NusG
[Acaryochloris marina MBIC11017]
Length = 206
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
WY VQV S CEKK ++ RL + + +I IP + VRK G ++ E + F
Sbjct: 23 RHWYAVQVASGCEKKVKHNLEQRLQTLDVADRIVQIEIPQTPTIKVRKDGSRLTGEEKVF 82
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ D+ + +K+TP VI F+G + P P++ SE+E I Q
Sbjct: 83 PGYVLVRMILDDETWQVVKNTPNVINFVGAEQQRRYGRGRGHVKPMPLSPSEVERIFRQA 142
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q PV V VG+++ V +GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 143 QE--QEPVVKVDMSVGDKIQVLNGPFKDFEGEVIEVSLERNKLKALLSIFGRDTPVELEF 200
Query: 171 NQVEK 175
NQV K
Sbjct: 201 NQVRK 205
>gi|291286300|ref|YP_003503116.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809]
gi|290883460|gb|ADD67160.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809]
Length = 174
Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY+V YS EK+ V + ++ L + ++ IP+E V+ ++KG+K S+++
Sbjct: 1 MAKQWYVVHTYSGFEKRVVTLLEEKVKNEKLADQIDDVLIPTEDVIELKKGKKKVSKKKT 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L+ M+ +H +K PKV GF+G G NP P+ + +++ +++ A + P +
Sbjct: 61 FPGYILVHMEMSTTNWHVVKSIPKVTGFVG-GINPVPIPEHDVKAMIDL--AKSESPRIA 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V DGPF F G V V+ +K +V V V IFGR TPVEL Y QV+++
Sbjct: 118 SKYVEGDTVEVIDGPFLGFTGTVDEVNPDKEKVRVIVSIFGRQTPVELDYLQVKRV 173
>gi|306826325|ref|ZP_07459658.1| transcription termination/antitermination factor NusG
[Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304431438|gb|EFM34421.1| transcription termination/antitermination factor NusG
[Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 183
Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+K E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 129 DIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQIAEL 183
>gi|227499794|ref|ZP_03929889.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC
35098]
gi|227218098|gb|EEI83366.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC
35098]
Length = 206
Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+V Y+ E + + I + + E+T+P+E V V+ K R+ F
Sbjct: 37 SARWYVVHTYTGYENRVKDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 95
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV++K +T+K ++ I++T V GF+G P +T E+ + EA P+ ++
Sbjct: 96 PGYVMVKMNVTNKSWYIIRNTQGVTGFVGPDGKPVALTAQEVRKFGVKEEA----PLVNI 151
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G+ + + GPF F V+ +D+EK + V +FGR T ++L + +E I
Sbjct: 152 DLKLGDSINIISGPFKDFVAKVEEIDKEKGTIKAFVDMFGRDTLIDLDFTDIETI 206
>gi|313677108|ref|YP_004055104.1| transcription antitermination protein nusg [Marivirga tractuosa DSM
4126]
gi|312943806|gb|ADR22996.1| transcription antitermination protein nusG [Marivirga tractuosa DSM
4126]
Length = 183
Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++V S EKK + ++R ++ + +I IP+E+V +R G+K E+ FFPG
Sbjct: 5 KWYVLRVISGQEKKIKSYLENEIARQKIEDFIPQILIPTEKVYEMRNGKKRVREKNFFPG 64
Query: 64 YVLIKAVMT-DKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHIMNQVEAAVQRP-V 118
YV + A ++ + +H I P VIGFLG + P P+ +E+ I+ +V+ +
Sbjct: 65 YVFVSADISHGEAHHVITSIPGVIGFLGGQGDEKEPVPLRQNEVNRILGKVDETEEMDEK 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S + VGE V V DGPF+ F G V+ V EE+ +++V V IFGR TPVEL Y QVEK
Sbjct: 125 LSTPYIVGESVKVMDGPFSGFTGSVEEVFEERKKLNVMVKIFGRNTPVELNYMQVEK 181
>gi|227536126|ref|ZP_03966175.1| transcription antitermination protein NusG [Sphingobacterium
spiritivorum ATCC 33300]
gi|300772097|ref|ZP_07081967.1| transcription termination/antitermination factor NusG
[Sphingobacterium spiritivorum ATCC 33861]
gi|227244023|gb|EEI94038.1| transcription antitermination protein NusG [Sphingobacterium
spiritivorum ATCC 33300]
gi|300760400|gb|EFK57226.1| transcription termination/antitermination factor NusG
[Sphingobacterium spiritivorum ATCC 33861]
Length = 181
Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ +WY+V+ S EKK + I +SR G+ HLV ++ IP E+ +R G+KV ER ++
Sbjct: 5 SLKWYVVRAVSGKEKKVKQYIDAEISRLGIQHLVAQVLIPMEKYYQMRDGKKVAKERNYY 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV-EAAVQRPVS 119
PGYVLI+A + + H IK+ VIGFLG N P+ SE+ I+ +V E A Q
Sbjct: 65 PGYVLIEASLDAETEHVIKNINSVIGFLGDKAGNAIPLRPSEVNRILGKVDEMAEQGETI 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+DGPF F G ++ V E+K ++ V V +FGR TP+EL Y QVEK
Sbjct: 125 NVPYYVGETVKVNDGPFNGFTGEIEEVHEDKKKLIVMVKVFGRKTPLELNYMQVEK 180
>gi|189460672|ref|ZP_03009457.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136]
gi|189432631|gb|EDV01616.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136]
Length = 180
Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAVSGKESKVKEYLEAEMRNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
PGYVL++A + +V H +++ VIGFLG E+P P+ SE+ I+ V+ + +
Sbjct: 64 LPGYVLVEAALVGEVAHHLRNITNVIGFLGGQEHPVPLRQSEVNRILGTVDELQEVSEDT 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V VS GPF+ F+GI++ V EK ++ V V IFGR TP+EL + VEK
Sbjct: 124 NIPYTVGETVKVSVGPFSGFSGIIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|296126978|ref|YP_003634230.1| NusG antitermination factor [Brachyspira murdochii DSM 12563]
gi|296018794|gb|ADG72031.1| NusG antitermination factor [Brachyspira murdochii DSM 12563]
Length = 195
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV E K E I R +G+ L+ +I IPSE V S + G+KV+ E F+PG
Sbjct: 12 RWYIVHTQHGYENKVRERIEKRTKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQ 115
YVL+K VM D ++ TP V GF+G+ P+P++++++ I + +
Sbjct: 72 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFENRDEKSK 131
Query: 116 RPVSSV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + F++GE+V V DGPF NG+++N++ +K RV V++ IFGR TP EL +++
Sbjct: 132 TEINEIIGMEFDIGEKVQVIDGPFNGLNGVIENINSDKGRVTVKIEIFGRSTPTELEFSK 191
Query: 173 VEKI 176
V+K+
Sbjct: 192 VKKL 195
>gi|213963080|ref|ZP_03391338.1| transcription termination/antitermination factor NusG
[Capnocytophaga sputigena Capno]
gi|213954164|gb|EEB65488.1| transcription termination/antitermination factor NusG
[Capnocytophaga sputigena Capno]
Length = 183
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 70/179 (39%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ + E K I SR G V E+ +P+E+VV VR G+K+ +R
Sbjct: 5 IEKKWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKITKDRVH 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQR-P 117
PGYV++K + +V H IK P V+GFL G +P P+ +++ ++ QV+ +
Sbjct: 65 MPGYVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVNRMLGQVDELAETVE 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ FEVGE V + DGPF FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 TVAIPFEVGEMVKLIDGPFNGFNGTIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183
>gi|307705692|ref|ZP_07642538.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK597]
gi|307707716|ref|ZP_07644195.1| transcription termination/antitermination factor NusG
[Streptococcus mitis NCTC 12261]
gi|307710897|ref|ZP_07647323.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK321]
gi|307616214|gb|EFN95408.1| transcription termination/antitermination factor NusG
[Streptococcus mitis NCTC 12261]
gi|307617253|gb|EFN96427.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK321]
gi|307620706|gb|EFN99796.1| transcription termination/antitermination factor NusG
[Streptococcus mitis SK597]
Length = 178
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 178
>gi|320536852|ref|ZP_08036847.1| transcription termination/antitermination factor NusG [Treponema
phagedenis F0421]
gi|320146311|gb|EFW37932.1| transcription termination/antitermination factor NusG [Treponema
phagedenis F0421]
Length = 185
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ +S E K +I +S + ++ +I IP E + ++ G+K +R+
Sbjct: 1 MAKEWYILHTFSGYENKIERTIRTLISNGEIPQDVIFDIKIPEEVLTEIKDGKKKTVKRK 60
Query: 60 FFPGYVLIKAVMTDKVY----HTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA- 112
F PGY+L++ + + + ++++ V GFLGTG P PV+ +E + I+ +
Sbjct: 61 FLPGYLLVEMDLPEMDWKAVCNSVRRIHGVTGFLGTGGNAKPQPVSAAEAKSILQKTGEI 120
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ + F VG++V + DGPFA+F+G V+ V +++++ V V IFGR TPVEL
Sbjct: 121 KGDKTARFARTFTVGQQVKIIDGPFATFSGEVEEVMADRNKLRVMVTIFGRTTPVELEML 180
Query: 172 QVEKI 176
QVE I
Sbjct: 181 QVEAI 185
>gi|300776006|ref|ZP_07085865.1| transcription termination/antitermination factor NusG
[Chryseobacterium gleum ATCC 35910]
gi|300505139|gb|EFK36278.1| transcription termination/antitermination factor NusG
[Chryseobacterium gleum ATCC 35910]
Length = 180
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S E K I + R G + VT++ IP E+V+ +R G+KV ER ++PG
Sbjct: 5 KWYVLKAISGQENKVKNYIETEIKRLGFEQYVTQVVIPMEKVIQIRNGKKVPKERPYYPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV-SS 120
Y++I+A + ++ H IK+ P VI FL G +P P+ SE+ ++ +++ +
Sbjct: 65 YLMIEADLMGEIPHVIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFASDVE 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + VGE V V DGPF FNG V+ + E+K ++ V V+IFGR TP+EL+Y QVEK+
Sbjct: 125 IPYVVGENVKVIDGPFNGFNGTVEKILEDKKKIEVSVLIFGRKTPMELSYMQVEKV 180
>gi|268608956|ref|ZP_06142683.1| transcription antitermination protein NusG [Ruminococcus
flavefaciens FD-1]
Length = 175
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K + I + L L+ E+ +P+E V + G+ ER+ +
Sbjct: 4 AAKWYVVHTYSGYENKVAKDIEKTVENRKLHELIQEVRVPTETVTEITDGKTKEVERKTY 63
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVLIK V+ D ++ +++T GF+G P+P++++E++ + V V
Sbjct: 64 PGYVLIKMVVNDDTWYLVRNTRGCTGFVGPASEPTPLSEAEVKQLF-----GVDVSSVEV 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
F+VG+RV +S F G+V+N++ E V + V +FGR TP L +QV
Sbjct: 119 NFKVGDRVQISGTAMDGFIGVVQNINLEDRSVDLLVSMFGRETPTTLPISQV 170
>gi|224023595|ref|ZP_03641961.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM
18228]
gi|224016817|gb|EEF74829.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM
18228]
Length = 180
Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E + + S L V+++ IP+E+ VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAVSGKEAKVKEYLEAEMRHSDLGEYVSQVLIPTEKTYQVRNGKKIVKERTY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
PGYVL++A + +V H +++ VIGFLG ++P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLVEAALVGEVAHQLRNITNVIGFLGGQDHPVPLRQSEVNRILGTVDELQEIGEDL 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V VS GPF+ F+G+++ V EK ++ V V IFGR TP+EL + VEK
Sbjct: 124 NIPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|332178503|gb|AEE14192.1| NusG antitermination factor [Thermodesulfobium narugense DSM 14796]
Length = 179
Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ SN EK+ E+I R R GL+ +T + IP E+ V + +K S ++ FPG
Sbjct: 9 KWYVITTLSNYEKRVEEAILVRAQREGLEDKITRVLIPVEKEVKMIGHQKKESSKKVFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++ + D ++ ++ TP V GF+ + + P P++ E+E IM + A +PV V F
Sbjct: 69 YVLVEMDLDDATWNLVRTTPGVTGFISSKKKPLPLSPEEVEKIM--MYAKSDKPVIRVEF 126
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+ V V+ GPFA G++ + EK V + + +FGR TP E+A Q+EK+
Sbjct: 127 EKGQVVRVTAGPFAEQTGVIDEIFPEKGTVRLVINLFGRDTPAEIALTQIEKV 179
>gi|163752685|ref|ZP_02159848.1| transcription antitermination protein NusG [Shewanella benthica
KT99]
gi|161327425|gb|EDP98648.1| transcription antitermination protein NusG [Shewanella benthica
KT99]
Length = 161
Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats.
Identities = 64/153 (41%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFP
Sbjct: 9 KRWYVVQAFSGYEGRVLKTLNEYIQMYKMEHFFGEILVPTEEVVEMRAGQRRKSERKFFP 68
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVL++ M D+ +H +K P+V+GF+ GT + P+P++D E + I+ +++ + P V
Sbjct: 69 GYVLVQMEMNDESWHLVKSVPRVMGFIGGTSDRPAPISDVEADRILQRLQETTESPTHRV 128
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
FE GE V V+DGPFA FNG V+ VD EK+RV
Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVK 161
>gi|169824235|ref|YP_001691846.1| transcription antiterminator [Finegoldia magna ATCC 29328]
gi|302380892|ref|ZP_07269354.1| transcription termination/antitermination factor NusG [Finegoldia
magna ACS-171-V-Col3]
gi|303234923|ref|ZP_07321548.1| transcription termination/antitermination factor NusG [Finegoldia
magna BVS033A4]
gi|167831040|dbj|BAG07956.1| transcription antiterminator [Finegoldia magna ATCC 29328]
gi|302311270|gb|EFK93289.1| transcription termination/antitermination factor NusG [Finegoldia
magna ACS-171-V-Col3]
gi|302494041|gb|EFL53822.1| transcription termination/antitermination factor NusG [Finegoldia
magna BVS033A4]
Length = 193
Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + G + E+ +P+E VS G K ER+ FPG
Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K +TD ++ +++T V GF+G P V++ EI+ + ++ ++ +
Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKK---EIDV 140
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + G F+ GI++ ++ EK+ V + +FGR T VE++++ +EKI
Sbjct: 141 NVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193
>gi|325954358|ref|YP_004238018.1| NusG antitermination factor [Weeksella virosa DSM 16922]
gi|323436976|gb|ADX67440.1| NusG antitermination factor [Weeksella virosa DSM 16922]
Length = 180
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K I L + ++ +P E+V +R G+K E+ FP
Sbjct: 4 KKWYVVKTVSGQELKVKNYIENEAQYHKLTDYIGQVVVPMEKVFQIRNGKKYQKEKVHFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
GYV+I+A + +V H +K+ P VI FL G +P P+ SE+ ++ +V+ S
Sbjct: 64 GYVMIEASLQGEVPHIVKNIPGVISFLSATKGGDPVPMRQSEVNRMLGKVDELADSIESN 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F+VGE + V DGPF+ F G ++ + E+K ++ V V+IFGR TP+EL + QVEKI
Sbjct: 124 SIPFDVGETIKVIDGPFSGFTGSIEKIHEDKRKLEVMVLIFGRKTPLELNFGQVEKI 180
>gi|167043576|gb|ABZ08271.1| putative transcription termination factor nusG [uncultured marine
microorganism HF4000_APKG2K17]
Length = 272
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E + ++I +L G++HLV EI IPSE ++ ++G+K +++FPG
Sbjct: 97 KWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQKYFPG 156
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVLI +T +++H + + +V GF+ GT + P P+ + E+E I +QV Q+ +
Sbjct: 157 YVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQKATEDE 216
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ VG++V +++G F +F+G + V+ E+ ++ V V IFGR TPVE+ + V+ +V
Sbjct: 217 YSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVKHVV 271
>gi|322378273|ref|ZP_08052755.1| transcription termination/antitermination factor NusG
[Streptococcus sp. M334]
gi|321280775|gb|EFX57793.1| transcription termination/antitermination factor NusG
[Streptococcus sp. M334]
Length = 183
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 129 DLDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 183
>gi|322392790|ref|ZP_08066248.1| transcription antitermination protein NusG [Streptococcus peroris
ATCC 700780]
gi|321144368|gb|EFX39771.1| transcription antitermination protein NusG [Streptococcus peroris
ATCC 700780]
Length = 178
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DINVEVGQTVRIIDGAFTDYTGKITEID--NNKVKMTISMFGNDTVAEVNLNQIAEL 178
>gi|297587475|ref|ZP_06946119.1| transcription termination/antitermination factor NusG [Finegoldia
magna ATCC 53516]
gi|297574164|gb|EFH92884.1| transcription termination/antitermination factor NusG [Finegoldia
magna ATCC 53516]
Length = 193
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V YS E K +I + G + E+ +P+E VS G K ER+ FPG
Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K +TD ++ +++T V GF+G P V++ EI+ + ++ ++ +
Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKK---EIDV 140
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V + G F+ GI++ ++ EK+ V + +FGR T VE++++ +EKI
Sbjct: 141 NIGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193
>gi|86134005|ref|ZP_01052587.1| transcriptional antitermination factor NusG [Polaribacter sp.
MED152]
gi|85820868|gb|EAQ42015.1| transcriptional antitermination factor NusG [Polaribacter sp.
MED152]
Length = 182
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ E K I +SR GL V ++ +P+E+VV +R G+KVN ER +FP
Sbjct: 6 MKWYVVRAIGGQENKVKNYIETEISRVGLSDYVNQVIVPTEKVVQIRNGKKVNRERVYFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GY++++A ++ +V H IK VIGFLG G P P+ SE+ ++ +V+ +VQ
Sbjct: 66 GYIMVEANLSGEVPHVIKAITGVIGFLGEVKGGEPVPMRKSEVNRMLGKVDELSVQDENI 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ + VGE V V DGPF F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 126 AIPYNVGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 182
>gi|15901830|ref|NP_346434.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TIGR4]
gi|116515696|ref|YP_817227.1| transcription antitermination protein NusG [Streptococcus
pneumoniae D39]
gi|168487640|ref|ZP_02712148.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1087-00]
gi|169834180|ref|YP_001695362.1| transcription antitermination protein NusG [Streptococcus
pneumoniae Hungary19A-6]
gi|172079577|ref|ZP_02709033.2| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1873-00]
gi|183603315|ref|ZP_02714099.2| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae SP195]
gi|183603677|ref|ZP_02718816.2| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC3059-06]
gi|194398075|ref|YP_002038590.1| transcription antitermination protein NusG [Streptococcus
pneumoniae G54]
gi|221232730|ref|YP_002511884.1| transcription antitermination factor [Streptococcus pneumoniae ATCC
700669]
gi|225855498|ref|YP_002737010.1| transcription antitermination protein NusG [Streptococcus
pneumoniae JJA]
gi|225857582|ref|YP_002739093.1| transcription antitermination protein NusG [Streptococcus
pneumoniae P1031]
gi|225859764|ref|YP_002741274.1| transcription antitermination protein NusG [Streptococcus
pneumoniae 70585]
gi|225861827|ref|YP_002743336.1| transcription antitermination protein NusG [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229090|ref|ZP_06962771.1| transcription antitermination protein NusG [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|307068619|ref|YP_003877585.1| transcription antiterminator [Streptococcus pneumoniae AP200]
gi|307128208|ref|YP_003880239.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae 670-6B]
gi|14973517|gb|AAK76074.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TIGR4]
gi|116076272|gb|ABJ53992.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae D39]
gi|168996682|gb|ACA37294.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae Hungary19A-6]
gi|172042609|gb|EDT50655.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1873-00]
gi|183569582|gb|EDT90110.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC1087-00]
gi|183571666|gb|EDT92194.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae SP195]
gi|183575431|gb|EDT95959.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC3059-06]
gi|194357742|gb|ACF56190.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae G54]
gi|220675192|emb|CAR69778.1| transcription antitermination factor [Streptococcus pneumoniae ATCC
700669]
gi|225720344|gb|ACO16198.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae 70585]
gi|225723234|gb|ACO19087.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae JJA]
gi|225724365|gb|ACO20217.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae P1031]
gi|225727169|gb|ACO23020.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae Taiwan19F-14]
gi|301794946|emb|CBW37409.1| transcription antitermination factor [Streptococcus pneumoniae
INV104]
gi|301800768|emb|CBW33418.1| transcription antitermination factor [Streptococcus pneumoniae
OXC141]
gi|301802685|emb|CBW35452.1| transcription antitermination factor [Streptococcus pneumoniae
INV200]
gi|306410156|gb|ADM85583.1| Transcription antiterminator [Streptococcus pneumoniae AP200]
gi|306485270|gb|ADM92139.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae 670-6B]
gi|327389002|gb|EGE87349.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA04375]
gi|332071720|gb|EGI82212.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA17545]
gi|332071800|gb|EGI82290.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA17570]
gi|332071866|gb|EGI82355.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae GA41301]
Length = 178
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DFDVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 178
>gi|161870928|ref|YP_001600108.1| transcription antitermination protein [Neisseria meningitidis
053442]
gi|161596481|gb|ABX74141.1| transcription antitermination protein [Neisseria meningitidis
053442]
Length = 148
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
+ +I +P E+VV +R GRK SER+ +PGYVL++ MTD +H +K TP+V GF+G
Sbjct: 1 MGDYFGQILVPVEKVVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIG 60
Query: 91 T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
P P++ E E I+ QV+ +++P V FEVG++V V++GPFA FNG+V+ V+ E
Sbjct: 61 GRANRPMPISQREAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYE 120
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 RNKLRVSVQIFGRETPVELEFSQVEKI 147
>gi|315605093|ref|ZP_07880145.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315313200|gb|EFU61265.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 264
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 11/187 (5%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K
Sbjct: 76 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGTAKKRVRHV 135
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRP 117
PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ N +E A +
Sbjct: 136 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAV 195
Query: 118 V--------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+EVGE V V DGPF + + + + E ++ V V IF R TP+EL
Sbjct: 196 KDQPAPVQAVQTQYEVGEIVTVIDGPFETMSATISEIMPETQKLKVLVTIFERETPLELG 255
Query: 170 YNQVEKI 176
++QVEK+
Sbjct: 256 FDQVEKL 262
>gi|325478598|gb|EGC81710.1| transcription termination/antitermination factor NusG [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 206
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 5/175 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+V Y+ E + + I + + E+T+P+E V V+ K R+ F
Sbjct: 37 SARWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 95
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV++K +T+K ++ I++T V GF+G P +T +E+ ++PV ++
Sbjct: 96 PGYVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKF----GVKDEKPVLNI 151
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + GPF F V+ +D EK + V +FGR T ++L + +E I
Sbjct: 152 NVNVGDDVNIISGPFEGFVAKVEEIDSEKGTIKAFVDMFGRDTLIDLDFTDIETI 206
>gi|295093315|emb|CBK82406.1| transcription antitermination protein nusG [Coprococcus sp.
ART55/1]
Length = 175
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K I L + E+ +P E ++ G+ + ER+ P
Sbjct: 7 ARWYVVHTYSGYENKVKADIEKTKENRNLQDQILEVVVPVEDATEIKNGKPKSIERKILP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI +M D ++ +++T V GF+G+ P P+TD E+ ++ E V +
Sbjct: 67 GYVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTDEELSNLYQTSEEVV------I 120
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ + V+ G + +K ++ K V +EV +FGRV V++A+ ++K+
Sbjct: 121 DVEVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 175
>gi|182684943|ref|YP_001836690.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CGSP14]
gi|182630277|gb|ACB91225.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CGSP14]
Length = 183
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ + FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVQENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 129 DFDVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 183
>gi|289167124|ref|YP_003445391.1| transcription antitermination factor [Streptococcus mitis B6]
gi|288906689|emb|CBJ21523.1| transcription antitermination factor [Streptococcus mitis B6]
Length = 178
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYDMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DFDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 178
>gi|15903862|ref|NP_359412.1| transcription antitermination protein NusG [Streptococcus
pneumoniae R6]
gi|111657098|ref|ZP_01407887.1| hypothetical protein SpneT_02001671 [Streptococcus pneumoniae
TIGR4]
gi|148985943|ref|ZP_01818996.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP3-BS71]
gi|148992157|ref|ZP_01821931.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP9-BS68]
gi|148998770|ref|ZP_01826207.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP11-BS70]
gi|149007846|ref|ZP_01831442.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP18-BS74]
gi|149011858|ref|ZP_01833006.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP19-BS75]
gi|149020768|ref|ZP_01835297.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP23-BS72]
gi|168492586|ref|ZP_02716729.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC0288-04]
gi|237650119|ref|ZP_04524371.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CCRI 1974]
gi|298254841|ref|ZP_06978427.1| transcription antitermination protein NusG [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298501505|ref|YP_003723445.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TCH8431/19A]
gi|303260785|ref|ZP_07346741.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP-BS293]
gi|303263114|ref|ZP_07349043.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS292]
gi|303265162|ref|ZP_07351074.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS397]
gi|303267720|ref|ZP_07353538.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS457]
gi|303270091|ref|ZP_07355800.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS458]
gi|15459507|gb|AAL00623.1| Transcription antitermination factor [Streptococcus pneumoniae R6]
gi|147755331|gb|EDK62381.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP11-BS70]
gi|147760696|gb|EDK67669.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP18-BS74]
gi|147763813|gb|EDK70746.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP19-BS75]
gi|147921916|gb|EDK73041.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP3-BS71]
gi|147929206|gb|EDK80217.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP9-BS68]
gi|147930409|gb|EDK81392.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP23-BS72]
gi|183573260|gb|EDT93788.1| transcription termination/antitermination factor NusG
[Streptococcus pneumoniae CDC0288-04]
gi|298237100|gb|ADI68231.1| transcription antitermination protein NusG [Streptococcus
pneumoniae TCH8431/19A]
gi|302635736|gb|EFL66242.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS292]
gi|302638067|gb|EFL68546.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP-BS293]
gi|302640373|gb|EFL70811.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS458]
gi|302642750|gb|EFL73079.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS457]
gi|302645243|gb|EFL75478.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS397]
Length = 183
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 129 DFDVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 183
>gi|326792626|ref|YP_004310447.1| NusG antitermination factor [Clostridium lentocellum DSM 5427]
gi|326543390|gb|ADZ85249.1| NusG antitermination factor [Clostridium lentocellum DSM 5427]
Length = 172
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M RWY+V +S E K +I + ++ L+ + +P ++ V + G K +R+
Sbjct: 1 MEKARWYVVHTFSGYENKVKANIEKAIKNRNMEELIHAVEVPLQQEVEEKNGVKKTVQRK 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYVL+K VMTD ++ +++T V GF+G P ++ E++++ ++
Sbjct: 61 TFPGYVLVKMVMTDDTWYVVRNTRGVTGFVGPDSKPVSLSLEEVKNM------GIELYGP 114
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ ++G+ V + G F + GIVK + + K + V V FGR PVE++ NQVE
Sbjct: 115 APKVKIGDAVTLLTGAFENSEGIVKEIHQSKGTIVVSVSGFGREFPVEISMNQVE 169
>gi|254425360|ref|ZP_05039078.1| transcription termination/antitermination factor NusG
[Synechococcus sp. PCC 7335]
gi|196192849|gb|EDX87813.1| transcription termination/antitermination factor NusG
[Synechococcus sp. PCC 7335]
Length = 218
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
PRWY VQV S CEKK ++ R+ L +++ E+ IP V +RK G + + E + F
Sbjct: 34 PRWYAVQVASGCEKKVKLTLEQRVKTFDLSNVILEVEIPQTPAVKMRKDGSRHSIEEKVF 93
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVLI+ + D + +K+TP VI F+G + P P++ E++ I Q
Sbjct: 94 PGYVLIRMALDDDAWQVVKNTPHVINFVGAEQRRAQGRGRGHVKPMPLSAGEVKRIFKQT 153
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 154 QE--QAPVVKIDMAAGDKITVLSGPFKDFEGEVVEVSPERSKLKALLSIFGRDTPVELEF 211
Query: 171 NQVEK 175
NQV+K
Sbjct: 212 NQVKK 216
>gi|261880900|ref|ZP_06007327.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
bergensis DSM 17361]
gi|270332408|gb|EFA43194.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
bergensis DSM 17361]
Length = 182
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++V S E K E I + + L V+++ IP E+ V++R G++V ++
Sbjct: 6 KNWYVLRVVSGKEAKVKEYIEAEMKHSTQLADHVSQVLIPMEKHVAIRNGKRVEKDKTSM 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ ++A + V ++ P +GF+G +NPSPV S+I ++ E + S+
Sbjct: 66 PGYIFVEAELNGDVAAALRFMPNCLGFIGGLDNPSPVPQSQINRMLGAAEESDMDNEVSI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + E V V DGPF+ F GI++ V+ EK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 126 PYVLDETVKVVDGPFSGFEGIIEEVNTEKRKLKVMVKIFGRKTPLELSFMQVEKV 180
>gi|283457498|ref|YP_003362079.1| transcription antiterminator [Rothia mucilaginosa DY-18]
gi|283133494|dbj|BAI64259.1| transcription antiterminator [Rothia mucilaginosa DY-18]
Length = 248
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 68 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V G F + V + E ++ V + +FGR TPV L++ ++EK
Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247
Query: 176 I 176
I
Sbjct: 248 I 248
>gi|322379403|ref|ZP_08053773.1| transcription antitermination protein NusG [Helicobacter suis HS1]
gi|322379973|ref|ZP_08054247.1| transcription antitermination protein NusG [Helicobacter suis HS5]
gi|321147601|gb|EFX42227.1| transcription antitermination protein NusG [Helicobacter suis HS5]
gi|321148112|gb|EFX42642.1| transcription antitermination protein NusG [Helicobacter suis HS1]
Length = 175
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
WY +Q YS E+ +++ + +G+ + V ++ +P+E V+ + +KG+ +ER +
Sbjct: 1 MEWYAIQTYSGSEQSVKKAVENMVRENGIANRVEKVIVPTEDVIELSKKGKNKVTERSLY 60
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV IK + ++H I+ PKV F+G + P+P++D++I +I+ ++ P +
Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPKVSRFIGESKKPTPLSDADIGNILEKMANRAA-PKPKI 119
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++E GE V + +GPFA+F V+ D E ++ + V IFGR T +++ Y+QVEKI+
Sbjct: 120 YYEKGEVVRIVEGPFANFTATVEEYDVEHRKLKLSVSIFGRNTLIDILYSQVEKII 175
>gi|260592783|ref|ZP_05858241.1| transcription termination/antitermination factor NusG [Prevotella
veroralis F0319]
gi|260535314|gb|EEX17931.1| transcription termination/antitermination factor NusG [Prevotella
veroralis F0319]
Length = 181
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+WY+++ S E K E I +L ++ L V E+ +P E+ ++R G++V E+
Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRQNDKLAERVFEVLLPMEKHATLRNGKRVVKEKLS 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V
Sbjct: 65 LPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEETELDEVQD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +EVGE V V+DGPF+ F+G+++ ++ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 VPYEVGETVKVTDGPFSGFHGVIEEMNAEKHKLKVMVMIFGRQNPLELSFMQVAK 179
>gi|319946091|ref|ZP_08020339.1| transcription antitermination protein NusG [Streptococcus australis
ATCC 700641]
gi|319747737|gb|EFV99982.1| transcription antitermination protein NusG [Streptococcus australis
ATCC 700641]
Length = 178
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQIEKNGKTKEIEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI +I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRNILISMGQTVQDF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ +VG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 NIDVKVGDTVRIIDGAFADYTGKITEID--NNKVKMIITMFGNDTVAEVNLNQIAEL 178
>gi|322386605|ref|ZP_08060230.1| transcription antitermination protein NusG [Streptococcus cristatus
ATCC 51100]
gi|321269278|gb|EFX52213.1| transcription antitermination protein NusG [Streptococcus cristatus
ATCC 51100]
Length = 178
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKSKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG FA++ G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 124 DLDVKVGDTVRIIDGAFANYTGKITEID--NNKVKMIISMFGNDTVAEVNLSQIAEL 178
>gi|183221359|ref|YP_001839355.1| transcription antitermination protein NusG [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911452|ref|YP_001963007.1| transcription antiterminator [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776128|gb|ABZ94429.1| Transcription antiterminator [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779781|gb|ABZ98079.1| Transcription antitermination protein NusG [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 184
Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY++Q YS E K +I + + L+ + + IPS V ++ G+K ++++
Sbjct: 5 LDKKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVTKKKL 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVE--AAVQRP 117
PGYVL++ MTD + I++ P V F+G P P++ EI+++ + V + +
Sbjct: 65 MPGYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVESEEVS 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F+VGE + + DGPFA+F G+V + +K R+ V V IFGR TPVEL Y QV+
Sbjct: 125 RPRFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQVK 181
>gi|255326801|ref|ZP_05367877.1| transcription termination/antitermination factor NusG [Rothia
mucilaginosa ATCC 25296]
gi|255296018|gb|EET75359.1| transcription termination/antitermination factor NusG [Rothia
mucilaginosa ATCC 25296]
Length = 248
Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V YS E K I R+ + + E+ +P E VV + K R PGY
Sbjct: 68 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q
Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+PV + VGE V V G F + V + E ++ V + +FGR TPV L++ ++EK
Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247
Query: 176 I 176
I
Sbjct: 248 I 248
>gi|148989702|ref|ZP_01821011.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP6-BS73]
gi|147924818|gb|EDK75901.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP6-BS73]
Length = 183
Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+
Sbjct: 129 DFDVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180
>gi|256819266|ref|YP_003140545.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271]
gi|315224709|ref|ZP_07866532.1| transcription termination/antitermination factor NusG
[Capnocytophaga ochracea F0287]
gi|256580849|gb|ACU91984.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271]
gi|314945337|gb|EFS97363.1| transcription termination/antitermination factor NusG
[Capnocytophaga ochracea F0287]
Length = 183
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 69/179 (38%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ + E K I SR G V E+ +P+E+VV VR G+K +R
Sbjct: 5 IEKKWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKTTKDRVH 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQR-P 117
PGYV++K + +V H IK P V+GFL G +P P+ +++ ++ QV+ +
Sbjct: 65 MPGYVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVSRMLGQVDELAETVE 124
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ FEVGE V + DGPF FN ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 125 TVAIPFEVGEMVKLIDGPFNGFNATIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183
>gi|227497153|ref|ZP_03927401.1| transcription antitermination protein [Actinomyces urogenitalis DSM
15434]
gi|226833410|gb|EEH65793.1| transcription antitermination protein [Actinomyces urogenitalis DSM
15434]
Length = 263
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY++ YS E++ I R L+ V + +P E V+ V+ G+K R PG
Sbjct: 64 WYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKEVSRVRIPG 123
Query: 64 YVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------- 108
YV ++ + D +V+ TIKDTP V GF+G NP P+T E +
Sbjct: 124 YVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYNPVPLTFDEAVSQLGPTPEEVAAKQ 183
Query: 109 ------------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + V V FEVGE V V+DGPF S + + E ++ V
Sbjct: 184 AAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQVL 243
Query: 157 VVIFGRVTPVELAYNQVEKI 176
+ +FGR TP EL++ QV KI
Sbjct: 244 ISLFGRDTPAELSFTQVAKI 263
>gi|282858393|ref|ZP_06267573.1| transcription termination/antitermination factor NusG [Prevotella
bivia JCVIHMP010]
gi|282588841|gb|EFB93966.1| transcription termination/antitermination factor NusG [Prevotella
bivia JCVIHMP010]
Length = 181
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+WY+++ S E K E I +L + L V E+ +P E+ S+R G++V E+
Sbjct: 5 EKKWYVLRAISGKEAKVKEYIDAQLRLNTKLAERVFEVLLPMEKHASLRNGKRVIKEKLS 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++A MT + T++ P V+GFLG PSP+ ++I ++ VE +
Sbjct: 65 LPGYVLVQANMTPDIASTLRFMPNVLGFLGGTSEPSPIRQADINRLLGNVEETEVNGMQD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V V +GPFA F+G+++ ++ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 VPYSVGESVKVIEGPFAGFHGVIEEINTEKHKLKVMVMIFGRQNPLELSFMQVSK 179
>gi|237821865|ref|ZP_04597710.1| transcription antitermination protein NusG [Streptococcus
pneumoniae CCRI 1974M2]
gi|303255490|ref|ZP_07341550.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS455]
gi|302597550|gb|EFL64636.1| transcription antitermination protein NusG [Streptococcus
pneumoniae BS455]
Length = 182
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G++ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+
Sbjct: 129 DFDVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180
>gi|325299607|ref|YP_004259524.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170]
gi|324319160|gb|ADY37051.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170]
Length = 180
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 107/176 (60%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K E I + + L V+++ IP+E+V VR G+K+ ER +
Sbjct: 4 IEKKWYVLRAVSGKEAKVKEYIEAEMRNTELGEYVSQVLIPTEKVYQVRNGKKIVKERSY 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
PGYVLI+A + +V H +++ VIGFLG ++P P+ SE+ I+ V+ +
Sbjct: 64 LPGYVLIEAALVGEVAHQLRNITNVIGFLGGLDHPVPLRQSEVNRILGTVDELQEVSEDM 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V VS GPF+ F+G+++ V EK ++ V V IFGR TP+EL + VEK
Sbjct: 124 NVPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179
>gi|262340952|ref|YP_003283807.1| transcription antitermination protein NusG [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272289|gb|ACY40197.1| transcription antitermination protein NusG [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 184
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K I + +G + ++ +P E+V+ +RKG+K++ E+
Sbjct: 4 LDRKWYVIKTISGQENKVKSYIENEIRDNGFQEHIGKVLVPIEKVIQMRKGKKIHREKVH 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQR 116
+PGYV+++A + + H IK+ P VI FL G+ P P+ E+ ++ +++ +
Sbjct: 64 YPGYVMVEANLEGEAVHAIKNVPGVINFLSEGKGSSAVPIPMRKEEVNKMLGKIDELSEN 123
Query: 117 PV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ F VGE + V DGPF FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EK
Sbjct: 124 YENISIPFVVGETIKVIDGPFTGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEK 183
Query: 176 I 176
I
Sbjct: 184 I 184
>gi|322390410|ref|ZP_08063931.1| transcription antitermination protein NusG [Streptococcus
parasanguinis ATCC 903]
gi|321142868|gb|EFX38325.1| transcription antitermination protein NusG [Streptococcus
parasanguinis ATCC 903]
Length = 178
Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DLDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQIAEL 178
>gi|315222231|ref|ZP_07864138.1| transcription termination/antitermination factor NusG
[Streptococcus anginosus F0211]
gi|319940425|ref|ZP_08014775.1| transcription antitermination protein nusG [Streptococcus anginosus
1_2_62CV]
gi|315188734|gb|EFU22442.1| transcription termination/antitermination factor NusG
[Streptococcus anginosus F0211]
gi|319810481|gb|EFW06823.1| transcription antitermination protein nusG [Streptococcus anginosus
1_2_62CV]
Length = 178
Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DIDVKVGDTVRIIDGAFADYTGKITEID--NNKVKMIISLFGNDTVAEVNLNQIAEL 178
>gi|116513058|ref|YP_811965.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. cremoris SK11]
gi|116108712|gb|ABJ73852.1| Transcription antiterminator [Lactococcus lactis subsp. cremoris
SK11]
Length = 185
Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q Y+ E+K E + R + + + IP+E + + G+ + E FPGY
Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKDVEENLFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ MTD+ + +++TP V GF+ G P+P+ + EI+ I+ + V+ V
Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+RV + DG F+ F + ++ + ++ + V +FGR TPVEL +Q+E I
Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGD--KLTLTVDMFGRATPVELDMHQIEDI 183
>gi|313884771|ref|ZP_07818526.1| transcription termination/antitermination factor NusG [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620032|gb|EFR31466.1| transcription termination/antitermination factor NusG [Eremococcus
coleocola ACS-139-V-Col8]
Length = 181
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 5/175 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ YS E K E+I R ++ + + +P E V V+ G + + + FP
Sbjct: 5 KEWYVLHTYSGYENKVKENIDLRKESMDMEDNIFRVEVPEEEVTEVKDGERTSKVEKTFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ +M+D + +++TP V GF+G+ G P+P+ + E+E I+ + ++
Sbjct: 65 GYVLVEMIMSDDAWFVVRNTPGVTGFVGSHGAGSKPAPLLEEEVEAILG--DRPMKPAPV 122
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ VG+ V + DGPFA+F+G ++ + +E R+ V + + GR T EL + QV
Sbjct: 123 ELDVAVGDYVDIVDGPFANFSGQIEEISQETQRLKVVLEMMGRETVTELDFAQVR 177
>gi|283769310|ref|ZP_06342210.1| transcription termination/antitermination factor NusG [Bulleidia
extructa W1219]
gi|283104086|gb|EFC05469.1| transcription termination/antitermination factor NusG [Bulleidia
extructa W1219]
Length = 196
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 102/177 (57%), Gaps = 6/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-RFFP 62
RWY+V Y+ E + +++ RL G+ + I + E + ++K K ++ FP
Sbjct: 19 RWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVKKVNMFP 78
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GY+ ++ MTD+ ++ +++TP V GF+G+ G P PV++ E+E I+ ++ Q+ V
Sbjct: 79 GYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHGDQKVV- 137
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+VG+ V + GPFA+ G + ++++ V ++FGR TP E++Y ++K+
Sbjct: 138 -VDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQKL 193
>gi|212696286|ref|ZP_03304414.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM
7454]
gi|325846531|ref|ZP_08169446.1| transcription termination/antitermination factor NusG [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|212676915|gb|EEB36522.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM
7454]
gi|325481289|gb|EGC84330.1| transcription termination/antitermination factor NusG [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 197
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY+V Y+ E + + I + ++ ++T+P E V V+ K R+ FP
Sbjct: 29 PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K +T++ ++ I++T V GF+G P P+T E+ +PV ++
Sbjct: 88 GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVRKF----GIKEDKPVLNID 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + GPF +K +D EK + + +FGR T ++L + +E I
Sbjct: 144 INVGDNVNIIQGPFKDLVAEIKEIDPEKQIIKALIDMFGRDTIIDLGFEDIETI 197
>gi|294674795|ref|YP_003575411.1| transcription termination/antitermination factor NusG [Prevotella
ruminicola 23]
gi|294473430|gb|ADE82819.1| transcription termination/antitermination factor NusG [Prevotella
ruminicola 23]
Length = 181
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+++ S E K E + + R S L V ++ +P+E+ +R G++V E+ F
Sbjct: 6 MKWYVLRAVSGKEAKVKEYLEALMKRDSFLQANVGQVLLPTEKYAQLRNGKRVVKEKLFL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVSS 120
PGYVL++A + ++ HT++ P V+GFLG +NP+PV S+I I+ E +
Sbjct: 66 PGYVLVEANLQGEMAHTLRFMPNVLGFLGGLDNPTPVKQSDINRILGTAEETEIKSEEIG 125
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + V E V V+DGPF+ F+GI++ V+ EK ++ V V IFGR TP+EL YNQVEK
Sbjct: 126 VPYAVDEAVKVTDGPFSGFSGIIEEVNAEKHKLKVMVKIFGRKTPLELGYNQVEK 180
>gi|322388919|ref|ZP_08062511.1| transcription antitermination protein NusG [Streptococcus infantis
ATCC 700779]
gi|321140302|gb|EFX35815.1| transcription antitermination protein NusG [Streptococcus infantis
ATCC 700779]
Length = 178
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+K E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ EVG+ V + +G FA + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DINVEVGQTVRIIEGAFADYTGKITEID--NNKVKMVISMFGNDTVAEVNLNQIAEL 178
>gi|125625148|ref|YP_001033631.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. cremoris MG1363]
gi|124493956|emb|CAL98951.1| transcription antitermination protein nusG [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071956|gb|ADJ61356.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. cremoris NZ9000]
Length = 185
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q Y+ E+K E + R + + + IP+E + + G+ + E FPGY
Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKIKDVEENLFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ MTD+ + +++TP V GF+ G P+P+ + EI+ I+ + V+ V
Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKIVREIDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+RV + DG F+ F + ++ + ++ + V +FGR TPVEL +Q+E I
Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGD--KLTLTVDMFGRATPVELDMHQIEDI 183
>gi|296875634|ref|ZP_06899704.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis ATCC 15912]
gi|312866822|ref|ZP_07727035.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis F0405]
gi|296433364|gb|EFH19141.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis ATCC 15912]
gi|311097605|gb|EFQ55836.1| transcription termination/antitermination factor NusG
[Streptococcus parasanguinis F0405]
Length = 178
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DLDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTVAEVNLNQIAEL 178
>gi|34540216|ref|NP_904695.1| transcription antitermination protein NusG [Porphyromonas
gingivalis W83]
gi|188995440|ref|YP_001929692.1| putative transcription antitermination protein [Porphyromonas
gingivalis ATCC 33277]
gi|34396528|gb|AAQ65594.1| transcription antitermination protein NusG [Porphyromonas
gingivalis W83]
gi|188595120|dbj|BAG34095.1| putative transcription antitermination protein [Porphyromonas
gingivalis ATCC 33277]
Length = 179
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
++Y+++ S E K E + + S L + + ++ IP+E+V++ R G++V ER +
Sbjct: 5 EKKFYVLRAISGKENKVREYLEAEMKHSDLGNYLFQVLIPTEKVMTQRAGKRVVKERPYL 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSS 120
PGYVL++AV+ +V H ++ TP VIGFLG G P+P+ SE+ I+ +V+ +
Sbjct: 65 PGYVLVEAVLVGEVEHRLRSTPNVIGFLGDG-RPAPLHPSEVSRILGKVDQLDSEDEEYE 123
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F VGE V VSDG FA F+ IV+ V+ +K ++ V V IFGR T +EL+Y QVEK
Sbjct: 124 LSFMVGETVKVSDGAFAGFDAIVEEVNPDKKKLKVMVKIFGRKTALELSYVQVEK 178
>gi|261749531|ref|YP_003257217.1| transcription termination/antitermination factor NusG
[Blattabacterium sp. (Periplaneta americana) str. BPLAN]
gi|261497624|gb|ACX84074.1| transcription termination/antitermination factor NusG
[Blattabacterium sp. (Periplaneta americana) str. BPLAN]
Length = 182
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ +WY+++ S E K I + +G + ++ +P E+V+ +RKG+K++ E+
Sbjct: 4 LERKWYVLKTISGQESKVKSYIENEIRDNGFQEYIGKVLVPIEKVIQMRKGKKIHREKVH 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+PGYV+I+A + + H IK+ P VI FL G G + P+ E+ ++ +++ +
Sbjct: 64 YPGYVMIEAHLEGEAVHAIKNVPGVINFLSEGKGGSAIPMRKEEVNKMLGKIDQLSENYE 123
Query: 119 S-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ S+ F VGE + V DGPF+ FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI
Sbjct: 124 NFSIPFVVGETIKVIDGPFSGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 182
>gi|15674086|ref|NP_268261.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. lactis Il1403]
gi|281492764|ref|YP_003354744.1| transcription antitermination protein NusG [Lactococcus lactis
subsp. lactis KF147]
gi|14423796|sp|Q9CDV7|NUSG_LACLA RecName: Full=Transcription antitermination protein nusG
gi|12725158|gb|AAK06202.1|AE006438_16 transcription antitermination protein [Lactococcus lactis subsp.
lactis Il1403]
gi|281376416|gb|ADA65902.1| Transcription antitermination protein NusG [Lactococcus lactis
subsp. lactis KF147]
gi|326407637|gb|ADZ64708.1| transcriptional antiterminator NusG [Lactococcus lactis subsp.
lactis CV56]
Length = 185
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q Y+ E+K E + R + + + IP+E + + G+ E FPGY
Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
VL++ MTD+ + +++TP V GF+ G P+P+ + EI+ I+ + V+ V
Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F VG+RV + DG F+ F + ++ + ++ + V +FGR TPVEL +Q+E I
Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGD--KLTLTVDMFGRATPVELDMHQIEDI 183
>gi|327404141|ref|YP_004344979.1| transcription antitermination protein nusG [Fluviicola taffensis
DSM 16823]
gi|327319649|gb|AEA44141.1| transcription antitermination protein nusG [Fluviicola taffensis
DSM 16823]
Length = 183
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 3/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V+ S EKK E + +SR LD V+++ IP+E+V +R G+K++ E+ + P
Sbjct: 6 KRWYVVRAVSGKEKKVKEYLDLEISRLKLDDYVSQVLIPTEKVFQIRNGKKISKEKAYLP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
GYVLI+A + +V H IK P VIGFLG G +P P+ SE+ I+ +V+ +
Sbjct: 66 GYVLIEAALLGEVPHVIKGIPNVIGFLGAEKGGDPQPMRLSEVNRILGKVDELSETEEEL 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F +GE V V DGPF +F+G+V ++E+K ++ V V IFGR +EL+Y QVEK
Sbjct: 126 KIPFVIGESVKVIDGPFNNFSGVVDEINEDKKKLKVMVKIFGRKNLLELSYMQVEK 181
>gi|291166888|gb|EFE28934.1| transcription termination/antitermination factor NusG [Filifactor
alocis ATCC 35896]
Length = 181
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V YS E K +I + ++ ++ +++P E +V + G+K R+ FP
Sbjct: 7 AKWYVVHTYSGHENKVKATIEKAVQNRNMEDIIPRVSVPVEEIVEEKNGKKHTRYRKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY L+K ++TD+ ++ +++T V GF+G P P+T+ E+ ++ + E V + +
Sbjct: 67 GYCLVKMIVTDESWYVVRNTKGVTGFVGPNSKPIPLTEQEVINMGLEEEVPV---IYKID 123
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG-RVTPVELAYNQVEK 175
F G+RV + G F+ V ++ EK ++V +FG R T V++ +Q+EK
Sbjct: 124 FAEGDRVIIKGGAFSGLRATVVSLHPEKGMAKIKVYMFGDRETLVDIEVSQLEK 177
>gi|125718987|ref|YP_001036120.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK36]
gi|323350655|ref|ZP_08086316.1| transcription antitermination protein NusG [Streptococcus sanguinis
VMC66]
gi|125498904|gb|ABN45570.1| Transcription antitermination factor NusG, putative [Streptococcus
sanguinis SK36]
gi|322123075|gb|EFX94766.1| transcription antitermination protein NusG [Streptococcus sanguinis
VMC66]
gi|324989882|gb|EGC21825.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK353]
gi|324992605|gb|EGC24526.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK405]
gi|324995865|gb|EGC27776.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK678]
gi|325686704|gb|EGD28730.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK72]
gi|325688846|gb|EGD30854.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK115]
gi|325695370|gb|EGD37270.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK150]
gi|325697311|gb|EGD39197.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK160]
gi|327460008|gb|EGF06347.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1]
gi|327463500|gb|EGF09819.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1057]
gi|327467893|gb|EGF13383.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK330]
gi|327472154|gb|EGF17591.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK408]
gi|327488598|gb|EGF20398.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1058]
gi|328944700|gb|EGG38861.1| transcription antitermination protein NusG [Streptococcus sanguinis
SK1087]
Length = 178
Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI +I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 124 DLDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMIISMFGNDTVAEVNLSQIAEL 178
>gi|306832628|ref|ZP_07465767.1| transcription termination/antitermination factor NusG
[Streptococcus bovis ATCC 700338]
gi|304425236|gb|EFM28363.1| transcription termination/antitermination factor NusG
[Streptococcus bovis ATCC 700338]
Length = 215
Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 43 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFP 102
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 103 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VI 160
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V + E ++V + + +FG T EL Q+ ++
Sbjct: 161 DTNIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQIAEL 215
>gi|325104986|ref|YP_004274640.1| transcription antitermination protein nusG [Pedobacter saltans DSM
12145]
gi|324973834|gb|ADY52818.1| transcription antitermination protein nusG [Pedobacter saltans DSM
12145]
Length = 180
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I +SR L+HLV ++ IP E+ +R G+K+ ER ++PG
Sbjct: 6 KWYVVRAVSGKEKKVKQYIDAEISRLELNHLVPQVLIPMEKYYQMRDGKKIAKERNYYPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVL++A + ++ IK+ VIGFLG N P+ +E+ I+ +V E Q + ++
Sbjct: 66 YVLVEAALNAELELIIKNLNSVIGFLGDKDGNAVPLRPAEVNRILGKVDEMTEQGEMMNI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V DGPF F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 PYYVGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179
>gi|306830387|ref|ZP_07463557.1| transcription termination/antitermination factor NusG
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
gi|304427412|gb|EFM30514.1| transcription termination/antitermination factor NusG
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
Length = 215
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 43 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 102
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 103 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VI 160
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V + E ++V + + +FG T EL Q+ ++
Sbjct: 161 DTNIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQIAEL 215
>gi|283780331|ref|YP_003371086.1| NusG antitermination factor [Pirellula staleyi DSM 6068]
gi|283438784|gb|ADB17226.1| NusG antitermination factor [Pirellula staleyi DSM 6068]
Length = 267
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPG 63
WYI++V N E S+ R++ +GL+ ++ +P+E V + G++ +++ +PG
Sbjct: 92 WYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKIYPG 151
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQRPVSS 120
Y+L+ V D+ + +++T + F G P+P+ ++E I+ +E + ++
Sbjct: 152 YILVNMVFNDETWFIVRETSGIGDFTGAMGKPTPMDPKDVERILRSSKMLEEDTNQVRTA 211
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VG+RV V +G F +F G + +D+ RV V + IFGR TPVEL + Q+E +
Sbjct: 212 IPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267
>gi|332182027|gb|AEE17715.1| NusG antitermination factor [Treponema brennaborense DSM 12168]
Length = 185
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ Y+ E K +I L L V +I +P E VV ++ G+K S ++
Sbjct: 1 MAKGWYILHTYTGYEGKIERTIRSLLETGDLSSEAVLDIKVPVEEVVEIKDGKKKTSTKK 60
Query: 60 FFPGYVLIKAVMTDKVY----HTIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEA- 112
F PGY++++ + D + I+ V GF+GTG E P P++ E + ++ +
Sbjct: 61 FLPGYIMLELDLPDIGWKAVCSVIRRIQGVTGFVGTGPSERPRPISLEEAKSLLQKSGEI 120
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ F VGE+V + +G FA+F+G ++ V+ EK+++ V V IFGR TPVE+
Sbjct: 121 KGEKTARLKQSFSVGEQVKIIEGAFATFSGTIEEVNLEKNKLRVMVQIFGRATPVEVDLL 180
Query: 172 QVEKI 176
QVEKI
Sbjct: 181 QVEKI 185
>gi|258646899|ref|ZP_05734368.1| transcription termination/antitermination factor NusG [Dialister
invisus DSM 15470]
gi|260404338|gb|EEW97885.1| transcription termination/antitermination factor NusG [Dialister
invisus DSM 15470]
Length = 206
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K +++ ++ G+D + +I +P V+ G K R+ FPG
Sbjct: 35 RWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPG 94
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LI+ + D+ ++ +++TP V GF+GT P P++D E + I +E ++ +
Sbjct: 95 YLLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRI---IEGKDKKQTAKTDA 151
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+VG+ + ++ GPFA + +V +V +++S++ ++ FG T +EL
Sbjct: 152 KVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELE 197
>gi|157150102|ref|YP_001451256.1| transcription antitermination protein NusG [Streptococcus gordonii
str. Challis substr. CH1]
gi|262283603|ref|ZP_06061368.1| transcription termination/antitermination factor NusG
[Streptococcus sp. 2_1_36FAA]
gi|157074896|gb|ABV09579.1| transcription termination/antitermination factor NusG
[Streptococcus gordonii str. Challis substr. CH1]
gi|262260660|gb|EEY79361.1| transcription termination/antitermination factor NusG
[Streptococcus sp. 2_1_36FAA]
Length = 178
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI +I+ + VQ
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEF-- 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ ++
Sbjct: 124 DIHVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLNQIAEL 178
>gi|124024464|ref|YP_001018771.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9303]
gi|123964750|gb|ABM79506.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9303]
Length = 241
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY +QV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + F
Sbjct: 57 ARWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVF 116
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E++ I +
Sbjct: 117 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKR- 175
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ + V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 176 -AAEKKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 234
Query: 171 NQVEK 175
+Q+ K
Sbjct: 235 SQINK 239
>gi|282878708|ref|ZP_06287476.1| transcription termination/antitermination factor NusG [Prevotella
buccalis ATCC 35310]
gi|281299099|gb|EFA91500.1| transcription termination/antitermination factor NusG [Prevotella
buccalis ATCC 35310]
Length = 181
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++ S E K E I + + L V+++ IP E++ ++R G++V E+
Sbjct: 6 KNWYVLRAVSGKEAKLKEYIEAEIKHNTLLQQHVSQVLIPMEKLATLRNGKRVEKEKISL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ ++A + V HT++ P +GFLG +NPSPV SEI ++ + E V
Sbjct: 66 PGYIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGEAEDTEIMNGIEV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYEVDEVVKVTDGPFSGFSGVIEEVNAEKHKLKVLVKIFGRKTPLELSFMQVEK 179
>gi|254429258|ref|ZP_05042965.1| transcription termination/antitermination factor NusG [Alcanivorax
sp. DG881]
gi|196195427|gb|EDX90386.1| transcription termination/antitermination factor NusG [Alcanivorax
sp. DG881]
Length = 150
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 4/149 (2%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ L EI +P+E VV ++ G+K SER+FFPGYVL++ M D +H IK+TPKV+GF+G
Sbjct: 1 MEELFGEILVPTEEVVEIKGGQKRKSERKFFPGYVLVQMEMCDDSWHLIKETPKVMGFIG 60
Query: 91 TG----ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
SP+T E + I+ +++ AV++P FE GE V V+DGPFA FNG+++ V
Sbjct: 61 EDPKNPGRVSPITQKEADAILRRMDDAVEKPKPKTLFEAGEVVRVNDGPFADFNGVIEEV 120
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 NYEKSRLQVAVMIFGRSTPVELEFGQVEK 149
>gi|254431017|ref|ZP_05044720.1| transcription termination/antitermination factor NusG [Cyanobium
sp. PCC 7001]
gi|197625470|gb|EDY38029.1| transcription termination/antitermination factor NusG [Cyanobium
sp. PCC 7001]
Length = 231
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+D+ + EI IP V ++K G + ++E + F
Sbjct: 47 ARWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPGVKLKKDGSRQSTEEKVF 106
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G E P P++ E++ I +
Sbjct: 107 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEERRATARARGHIKPRPLSRQEVDRIFKR- 165
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++PV V G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 166 -AAEKKPVVKVDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 224
Query: 171 NQVEK 175
Q+ K
Sbjct: 225 AQISK 229
>gi|303237461|ref|ZP_07324026.1| transcription termination/antitermination factor NusG [Prevotella
disiens FB035-09AN]
gi|302482281|gb|EFL45311.1| transcription termination/antitermination factor NusG [Prevotella
disiens FB035-09AN]
Length = 181
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+WY+++ S E K E I L + L V E+ +P+E S+R G++V +E+
Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAELRQNAKLAERVFEVLLPTESHASLRNGKRVVTEKLS 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++A+M +V T++ P V+GFLG P+PV +E+ ++ VE V
Sbjct: 65 LPGYVLVEAIMNSEVASTLRFMPNVLGFLGGVAEPTPVRQAEVNRLLGNVEDTALEEVQD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 IPYTVGESVKVTDGPFSGFHGIIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 179
>gi|237736026|ref|ZP_04566507.1| transcription antitermination protein nusG [Fusobacterium
mortiferum ATCC 9817]
gi|229421840|gb|EEO36887.1| transcription antitermination protein nusG [Fusobacterium
mortiferum ATCC 9817]
Length = 200
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G+ +VT+I +P E + +G+K R+ FP
Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLGMGDIVTKILVPEEETIEEVRGKKKTVARKIFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
GYV+++ V + ++ +++T V GF+G G +P P+ D E+++I
Sbjct: 67 GYVMLEMVATREESNEGINFRVDSDAWYVVRNTNGVTGFVGVGSDPIPMEDEEVKNIFEV 126
Query: 110 VE------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ + V + F VG+ V V G FA G V +D E + V + +FGR+
Sbjct: 127 IGLDLTEEEKELKEVIKINFAVGDYVKVLKGGFADQEGKVAEIDMEHKKAKVMIEMFGRM 186
Query: 164 TPVELAYNQVEK 175
TPVE+ ++ V+K
Sbjct: 187 TPVEVDFDSVQK 198
>gi|116071969|ref|ZP_01469237.1| transcription antitermination protein NusG [Synechococcus sp.
BL107]
gi|116065592|gb|EAU71350.1| transcription antitermination protein NusG [Synechococcus sp.
BL107]
Length = 222
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP + ++K G + ++E + F
Sbjct: 38 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+Q+ K
Sbjct: 216 SQISK 220
>gi|163815635|ref|ZP_02207008.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759]
gi|158449272|gb|EDP26267.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759]
Length = 179
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V YS E K I L + E+ +P E ++ G+ + ER+ P
Sbjct: 11 ARWYVVHTYSGYENKVKADIEKTKENRNLQDQIIEVVVPVEDATEIKNGKPKSIERKILP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYVLI +M D ++ +++T V GF+G+ P P+T+ E+ ++ + V +
Sbjct: 71 GYVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTEEELSNLYQTSDEVV------I 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
EVG+ + V+ G + +K ++ K V +EV +FGRV V++A+ ++K+
Sbjct: 125 DVEVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 179
>gi|87300788|ref|ZP_01083630.1| transcription antitermination protein NusG [Synechococcus sp. WH
5701]
gi|87284659|gb|EAQ76611.1| transcription antitermination protein NusG [Synechococcus sp. WH
5701]
Length = 226
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 14/187 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
M RWY VQV S+CEKK ++ R G+D + EI IP V ++K G + +E +
Sbjct: 40 MVARWYAVQVASSCEKKVKATLEQRAITLGVDSRILEIEIPQTPAVKLKKDGSRQAAEEK 99
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMN 108
FPGYVL++ ++ + ++ TP VI F+G E P P++ E++ I
Sbjct: 100 VFPGYVLVRMMLDEDTMMAVRSTPNVINFVGQEERRSTGRARGHIKPRPLSRQEVDRIFK 159
Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ AA ++PV V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL
Sbjct: 160 R--AAEKKPVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVEL 217
Query: 169 AYNQVEK 175
+ Q+ K
Sbjct: 218 EFAQISK 224
>gi|78185724|ref|YP_378158.1| transcription antitermination protein NusG [Synechococcus sp.
CC9902]
gi|78170018|gb|ABB27115.1| transcription antitermination protein nusG [Synechococcus sp.
CC9902]
Length = 222
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP + ++K G + ++E + F
Sbjct: 38 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+Q+ K
Sbjct: 216 SQISK 220
>gi|116074059|ref|ZP_01471321.1| transcription antitermination protein NusG [Synechococcus sp.
RS9916]
gi|116069364|gb|EAU75116.1| transcription antitermination protein NusG [Synechococcus sp.
RS9916]
Length = 220
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R + + EI IP V ++K G + ++E + F
Sbjct: 36 ARWYAVQVASSCEKKVKATLEQRAVTLAVSDRILEIEIPETPAVKIKKDGSRQSTEEKVF 95
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 96 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 154
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 155 -AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 213
Query: 171 NQVEK 175
+QV K
Sbjct: 214 SQVSK 218
>gi|37520399|ref|NP_923776.1| transcription antitermination protein NusG [Gloeobacter violaceus
PCC 7421]
gi|35211392|dbj|BAC88771.1| transcription antitermination protein [Gloeobacter violaceus PCC
7421]
Length = 205
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 69/187 (36%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
P WY VQV S CEKK ++ R+ + + ++ IP + V +R+ G + S +
Sbjct: 19 EPHWYFVQVASGCEKKVKTNLEQRIQTMEMSERILKVEIPERQAVRIRQEGSRTASAEKI 78
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
FPGYVLI VM D+ + +K+TP VI F+GT E P P+ +E+ I
Sbjct: 79 FPGYVLINMVMDDESWQVVKNTPNVINFVGTEERRRYGRGRGHVTPRPLGSAEVNRIFRA 138
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E + PV V E G ++ V+ GPF FNG V V+ E+ + + IFGR TPVEL
Sbjct: 139 AEQ--EEPVIKVDLEPGHKIEVTAGPFQDFNGEVVEVNPERGTLKALISIFGRDTPVELG 196
Query: 170 YNQVEKI 176
+NQV ++
Sbjct: 197 FNQVRRL 203
>gi|255037208|ref|YP_003087829.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053]
gi|254949964|gb|ACT94664.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053]
Length = 184
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 108/177 (61%), Gaps = 6/177 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++++ S EKK I ++R L+ V +I IPSE++ +R G+K E+ FFPGY
Sbjct: 6 WFVLRAVSGQEKKIKSYIENEITRQKLNEFVPQILIPSEKIYEMRNGKKRVREKNFFPGY 65
Query: 65 VLIKAVMT-DKVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIMNQVEAAVQ-RPV 118
++I A ++ +V H I P VIGFLG E P P+ SEI I+ +V+ A Q
Sbjct: 66 IIISADLSKGEVLHIITSIPGVIGFLGNAEGNSKVPVPLRQSEINRILGKVDEAEQHEEA 125
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S+ F GE V V DGPF+ F G+V+ V +EK +++V V IFGR TPVEL+Y QVEK
Sbjct: 126 PSMSFIKGETVKVVDGPFSGFIGLVEEVFDEKKKLNVVVKIFGRNTPVELSYAQVEK 182
>gi|318040711|ref|ZP_07972667.1| transcription antitermination protein NusG [Synechococcus sp.
CB0101]
Length = 226
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+D+ + EI IP V ++K G + ++E + F
Sbjct: 42 ARWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPAVKLKKDGSRTSTEEKVF 101
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 102 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 160
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++PV V G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 161 -AAEKKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 219
Query: 171 NQVEK 175
+Q+ K
Sbjct: 220 SQISK 224
>gi|330718911|ref|ZP_08313511.1| transcription antitermination protein nusG [Leuconostoc fallax KCTC
3537]
Length = 188
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 10/185 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ W++V YS E K ++ R G+ + I +P + V +++ G +
Sbjct: 5 IEKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIKDGEAKQTIEND 64
Query: 61 FPGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVE 111
FPGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E+E ++ ++
Sbjct: 65 FPGYVLVEMATPQEGNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVELLLRRMG 124
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V R + E+G+ V + GPF+ GIV ++D EK + V +FGR TP EL++
Sbjct: 125 M-VTRETVDLDVEIGDAVKIIAGPFSGMEGIVTSIDPEKQAIEATVEVFGRETPTELSFT 183
Query: 172 QVEKI 176
++ +
Sbjct: 184 DIDTL 188
>gi|261367232|ref|ZP_05980115.1| transcription termination/antitermination factor NusG
[Subdoligranulum variabile DSM 15176]
gi|282570832|gb|EFB76367.1| transcription termination/antitermination factor NusG
[Subdoligranulum variabile DSM 15176]
Length = 179
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 13/182 (7%)
Query: 1 MTPR--WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV---RKGRK-- 53
M + WY+V YS E K + + + L L+ ++ +P+E V+ + G K
Sbjct: 1 MAEQANWYVVHTYSGYENKVAQDLMTMVENRRLQDLICDVKVPTETVIEEVLDKTGNKTG 60
Query: 54 -VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
+R+ +PGYV +K VM D ++ +++T GF+G P P+T++E+ +
Sbjct: 61 EKEVQRKLYPGYVFVKMVMNDNTWYIVRNTRGCTGFVGPESKPEPLTEAEVAKM-----G 115
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V ++VG+ V ++ GP G V+ +D +V V++ +FGR P EL +Q
Sbjct: 116 VETTAELQVDYKVGDTVEITAGPMEGSVGTVEEIDIPARKVRVKITMFGRELPAELELHQ 175
Query: 173 VE 174
V+
Sbjct: 176 VK 177
>gi|312865546|ref|ZP_07725773.1| transcription termination/antitermination factor NusG
[Streptococcus downei F0415]
gi|311099064|gb|EFQ57281.1| transcription termination/antitermination factor NusG
[Streptococcus downei F0415]
Length = 180
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMTENILRVEIPTQTVNVEKNGKTKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD + +++TP V GF+ G P+P+ + EI I+ + V+ V
Sbjct: 67 GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVE--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V + E ++V + + +FG T E+ Q+ +I
Sbjct: 125 DTNIKVGDVVQIIDGAFMGQEGRVIEI--ENNKVKIMINMFGSETAAEVELYQIAEI 179
>gi|288904354|ref|YP_003429575.1| transcription antitermination factor [Streptococcus gallolyticus
UCN34]
gi|288731079|emb|CBI12625.1| transcription antitermination factor [Streptococcus gallolyticus
UCN34]
Length = 179
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VI 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V + E ++V + + +FG T EL Q+ ++
Sbjct: 125 DTNIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQIAEL 179
>gi|256545060|ref|ZP_05472427.1| transcription antitermination protein NusG [Anaerococcus vaginalis
ATCC 51170]
gi|256399263|gb|EEU12873.1| transcription antitermination protein NusG [Anaerococcus vaginalis
ATCC 51170]
Length = 197
Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY+V Y+ E + + I + ++ ++T+P E V V+ K R+ FP
Sbjct: 29 PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K +T++ ++ I++T V GF+G P P+T E+ +PV ++
Sbjct: 88 GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVRKF----GIKEDKPVLNIN 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ + + GPF VK VD +K + + +FGR T ++L++ +E I
Sbjct: 144 INVGDNINIIQGPFKDLVAEVKEVDTDKQIIKALIDMFGRDTIIDLSFEDIETI 197
>gi|262067338|ref|ZP_06026950.1| transcription termination/antitermination factor NusG
[Fusobacterium periodonticum ATCC 33693]
gi|291378901|gb|EFE86419.1| transcription termination/antitermination factor NusG
[Fusobacterium periodonticum ATCC 33693]
Length = 193
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ L +VT I +P E + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + V++ I++T V GF+G G +P P+ D E+++I N
Sbjct: 67 AYVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGMDTSKETIKLDFAEGDFVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|88809791|ref|ZP_01125297.1| transcription antitermination protein NusG [Synechococcus sp. WH
7805]
gi|88786175|gb|EAR17336.1| transcription antitermination protein NusG [Synechococcus sp. WH
7805]
Length = 222
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP V V+K G + ++E + F
Sbjct: 38 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+QV K
Sbjct: 216 SQVSK 220
>gi|297184066|gb|ADI20185.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 182
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E+K I ++ +G+ LV + IP E+VV VR G+KV E+ P
Sbjct: 6 MKWYVLRTISGQEQKTKTYIEKDMAHAGMSDLVGRVLIPLEKVVQVRNGKKVIKEKTRTP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
GY+ I+AV+T +V H IK+ P V+GFL GE+PSP+ SE+ ++ +V+ +
Sbjct: 66 GYMYIEAVLTGEVSHMIKNLPNVVGFLSNVKGEDPSPMRASEVSRLLGEVDRQAENAAML 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F +GE V V +GPF++F+ ++ ++EEK ++ V V IFGR TPVEL + +VEK+
Sbjct: 126 MIPFTLGETVKVINGPFSTFDATIEKINEEKQKLEVTVKIFGRKTPVELGFTEVEKL 182
>gi|110004182|emb|CAK98520.1| putative transcription antitermination nusg transmembrane protein
[Spiroplasma citri]
Length = 217
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ YS E + + + R+ + +V +I + E V + + G+ + E+ +PG
Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQ----- 115
Y+ I +M D+ ++ +++T V GF+G+ G P P+TD E ++++ AA +
Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151
Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ V FEV + V + G F G V +D K V + +FGR+TP E+ ++
Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211
Query: 172 QVEKI 176
Q EKI
Sbjct: 212 QCEKI 216
>gi|148243458|ref|YP_001228615.1| transcription antitermination protein NusG [Synechococcus sp.
RCC307]
gi|147851768|emb|CAK29262.1| Transcription antiterminator protein NusG [Synechococcus sp.
RCC307]
Length = 221
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + F
Sbjct: 37 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKIKKDGSRQSTEEKVF 96
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVLI+ VM + ++ TP VI F+G E P P++ SE+ I +
Sbjct: 97 PGYVLIRMVMDEDTEQAVRSTPNVINFVGHEERRTTGRVRGRIKPRPLSRSEVNRIFKRA 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ ++PV V G+R+ V+ GPF F+G V + ++S++ + IFGR TPVEL +
Sbjct: 157 QE--KKPVVKVDLAEGDRISVTAGPFKDFSGEVIEISGDRSKLKALLSIFGRETPVELEF 214
Query: 171 NQVEK 175
+Q+ K
Sbjct: 215 SQISK 219
>gi|297571949|ref|YP_003697723.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM
20595]
gi|296932296|gb|ADH93104.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM
20595]
Length = 288
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 14/187 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ Y+ EK+ + R+ ++ + +I +P E V V+KG + R PG
Sbjct: 101 RWYVLHTYAGYEKRVKHDLETRMHSLDMEDYIFQIEVPMEEVFEVKKGSRKLVSRVRIPG 160
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
Y LI+ MTD + ++DT V GF+G G P +T E+ ++ +
Sbjct: 161 YALIRMKMTDDSWRVVQDTNGVTGFVGNGRTPVALTPDEVVQMLTPIVEKEAAVAVETAG 220
Query: 120 ----------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V + VGE V ++ P+ + VD R+ V + + G+ TPV+L+
Sbjct: 221 KKVGNVGVTLEVEYSVGEIVTLTTEPWMGMPATISQVDAVNQRLTVLMTLVGQETPVDLS 280
Query: 170 YNQVEKI 176
+ QV+K+
Sbjct: 281 FGQVKKM 287
>gi|225867754|ref|YP_002743702.1| transcription antitermination factor [Streptococcus equi subsp.
zooepidemicus]
gi|225869698|ref|YP_002745645.1| transcription antitermination factor [Streptococcus equi subsp.
equi 4047]
gi|225699102|emb|CAW92268.1| transcription antitermination factor [Streptococcus equi subsp.
equi 4047]
gi|225701030|emb|CAW97809.1| transcription antitermination factor [Streptococcus equi subsp.
zooepidemicus]
Length = 186
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 12 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 72 GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVD--VF 129
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 130 DTNIKEGDMVQIIDGAFIGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQIAEL 184
>gi|33866874|ref|NP_898433.1| transcription antitermination protein NusG [Synechococcus sp. WH
8102]
gi|33639475|emb|CAE08859.1| transcription antitermination protein, NusG [Synechococcus sp. WH
8102]
Length = 222
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + EI IP V V+K G + ++E + F
Sbjct: 38 ARWYAVQVASSCEKKVKATLEQRAITLGVSKRILEIEIPQTPAVKVKKDGSRQSTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ +E++ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRAAGKARGHIKPRPLSRAEVDRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+Q+ K
Sbjct: 216 SQISK 220
>gi|119485148|ref|ZP_01619533.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106]
gi|119457376|gb|EAW38501.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106]
Length = 210
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP + +RK G + SE + FP
Sbjct: 16 RWYAVQVASGCEKRVKVNLEQRIKTLDVGDRILKVQIPQTPTIKLRKDGSRQQSEEKVFP 75
Query: 63 GYVLIKAVM-----------TDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTD 100
GYVL++ + D+ + +K+TP VI F+G + P P++
Sbjct: 76 GYVLVQMKLKWNGDFSHWDIDDEAWQVVKNTPHVINFVGAEQKRSSSRGRGHVKPLPLSS 135
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+E+E I Q + A PV V G+ + V GPF F G V V E++++ + IF
Sbjct: 136 AEVERIFRQTQQAE--PVVQVAMVAGDHIVVLSGPFKDFEGDVIEVSPERNKLKALLSIF 193
Query: 161 GRVTPVELAYNQVEK 175
GR TPVEL +NQVEK
Sbjct: 194 GRDTPVELEFNQVEK 208
>gi|253581636|ref|ZP_04858860.1| transcription antitermination protein nusG [Fusobacterium varium
ATCC 27725]
gi|251835985|gb|EES64522.1| transcription antitermination protein nusG [Fusobacterium varium
ATCC 27725]
Length = 199
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G+ +VT++ +P E + +G+K R+ FP
Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLGIGEIVTKVLVPEEETIEEVRGKKKTVARKIFP 66
Query: 63 GYVLIKAVMTDK-------------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
GYV+++ V T + ++ +++T V GF+G G +P P+ D E+ +I
Sbjct: 67 GYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVANIFRV 126
Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ E + V + F +G+ V + G FA G V +D E+ +V V + +FGR+
Sbjct: 127 IGYDIPEEEKENKEVLKINFGLGDFVKILGGGFAGHEGKVAEIDMEQRKVKVMIEMFGRM 186
Query: 164 TPVELAYNQVEK 175
TPVE+ +N VEK
Sbjct: 187 TPVEVDFNSVEK 198
>gi|291516066|emb|CBK65276.1| transcription antitermination protein nusG [Alistipes shahii WAL
8301]
Length = 186
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 7/180 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ E K E I + + L+ ++++ IP+E+V ++R G+KV+ E+ +P
Sbjct: 6 KQWYVVRAIGGKEGKVKEYIEAEIRHNHLEDYISQVLIPTEKVYTIRNGKKVSKEKVSYP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEA-AVQ 115
GYVL++A ++ I++TP V+GFLG + N +P+ E+ I+ +V+ Q
Sbjct: 66 GYVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDELNAQ 125
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 EEENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVEK 185
>gi|257066639|ref|YP_003152895.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548]
gi|256798519|gb|ACV29174.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548]
Length = 207
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V Y+ E + + I + + E+T+P+E V V+ K R+ FP
Sbjct: 39 ARWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLFP 97
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K +T+K ++ I++T V GF+G P +T +E+ + P+ ++
Sbjct: 98 GYVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKF----GVKDEAPILNIN 153
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + GPF F V+ VD+EK + V +FGR T ++L + +E I
Sbjct: 154 VNVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIETI 207
>gi|146321834|ref|YP_001201545.1| transcription antitermination protein NusG [Streptococcus suis
98HAH33]
gi|145692640|gb|ABP93145.1| Transcription antiterminator [Streptococcus suis 98HAH33]
Length = 179
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEF-- 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ VC+ DG F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 125 DIDVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQIAEL 179
>gi|22538197|ref|NP_689048.1| transcription antitermination protein NusG [Streptococcus
agalactiae 2603V/R]
gi|25012055|ref|NP_736450.1| transcription antitermination protein NusG [Streptococcus
agalactiae NEM316]
gi|76786867|ref|YP_330590.1| transcription antitermination protein NusG [Streptococcus
agalactiae A909]
gi|76797850|ref|ZP_00780114.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 18RS21]
gi|77406157|ref|ZP_00783229.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae H36B]
gi|77409156|ref|ZP_00785869.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae COH1]
gi|77411825|ref|ZP_00788159.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae CJB111]
gi|77412987|ref|ZP_00789190.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 515]
gi|22535108|gb|AAN00921.1|AE014285_3 transcription antitermination protein NusG [Streptococcus
agalactiae 2603V/R]
gi|24413598|emb|CAD47676.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561924|gb|ABA44508.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae A909]
gi|76586810|gb|EAO63304.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 18RS21]
gi|77160999|gb|EAO72107.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae 515]
gi|77162102|gb|EAO73079.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae CJB111]
gi|77172240|gb|EAO75396.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae COH1]
gi|77175237|gb|EAO78034.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae H36B]
gi|319746037|gb|EFV98316.1| transcription termination/antitermination factor NusG
[Streptococcus agalactiae ATCC 13813]
Length = 179
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T EL QV ++
Sbjct: 125 DTNIKEGDVVQIIDGAFIGQEGRVVEI--ENNKVKLMINMFGSETQAELELYQVAEL 179
>gi|87306550|ref|ZP_01088697.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645]
gi|87290729|gb|EAQ82616.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645]
Length = 294
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI++V SN EK ++ R+ +GL+ E+ +P+E +V + G+K ++R+ +PGY
Sbjct: 120 WYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYPGY 179
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA---AVQRPVSSV 121
+++ + D + +++T + F G P+P+ E+E I +VE + +++
Sbjct: 180 IVVHMAINDDTWFLVRETGGIGDFTGAAGRPTPMLAHEVERITKKVEDEETGEEPVKTNI 239
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F++G+ V +++G F +F G V+ +DE RV V + IFGR TPVE+ + Q+E +
Sbjct: 240 RFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294
>gi|291276547|ref|YP_003516319.1| putative transcription antitermination protein [Helicobacter
mustelae 12198]
gi|290963741|emb|CBG39576.1| putative transcription antitermination protein [Helicobacter
mustelae 12198]
Length = 173
Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY +Q YS E+ +++ L + ++ I +P+E V + G+K+ +R
Sbjct: 1 MLLDWYAIQTYSGSEQSVEKAVKNLLDNANIEC---RIVVPTEDVFEYKNGKKITKKRSI 57
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+PGYV I+ +T ++H I+ PKV F+G + P+P++ ++ I+ +VE P
Sbjct: 58 YPGYVFIQVNLTTSIWHMIQRLPKVSKFIGEDKKPTPLSREDVASILEKVEKRSD-PKPK 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++F GE V + +GPF +F +V+ D E ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 117 IYFGKGEIVRIINGPFINFTAMVEEYDVEHEKLKLNVSIFGRNTPIEILYSQVEKIV 173
>gi|213964871|ref|ZP_03393070.1| transcription antitermination protein NusG [Corynebacterium
amycolatum SK46]
gi|213952407|gb|EEB63790.1| transcription antitermination protein NusG [Corynebacterium
amycolatum SK46]
Length = 294
Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WYI+Q YS E K ++ R G+D + E+ +P E V + G+K +R+ PG
Sbjct: 99 WYIIQCYSGYENKVKTNLEMRAQTMGVDEQIHEVIVPVEEVEERKDDGKKKIVKRKLLPG 158
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------ 111
YVL++ + D + ++DTP V F+G+ PS V E+ + E
Sbjct: 159 YVLVRMSLDDPSWSVVRDTPGVTSFVGSEGQPSKVKIREVAKFLMPKETITADAAEEAAN 218
Query: 112 ----------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
++ ++ +EVGE V + GPFAS + +D + R+ V IFG
Sbjct: 219 ADGELAVAAAPQAEKKAVAIDYEVGESVTILSGPFASVAATISEIDPDTGRMKALVSIFG 278
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL ++VEK+
Sbjct: 279 RETPVELGIDEVEKL 293
>gi|322373828|ref|ZP_08048363.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C150]
gi|321277200|gb|EFX54270.1| transcription termination/antitermination factor NusG
[Streptococcus sp. C150]
Length = 179
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVD--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V +D ++V + + +FG T EL Q+ ++
Sbjct: 125 DTNIKVGDVVQIIDGAFMGQEGRVVEID--NNKVKIMINMFGSETAAELELYQIAEL 179
>gi|281425130|ref|ZP_06256043.1| transcription termination/antitermination factor NusG [Prevotella
oris F0302]
gi|299141115|ref|ZP_07034252.1| transcription termination/antitermination factor NusG [Prevotella
oris C735]
gi|281400722|gb|EFB31553.1| transcription termination/antitermination factor NusG [Prevotella
oris F0302]
gi|298577075|gb|EFI48944.1| transcription termination/antitermination factor NusG [Prevotella
oris C735]
Length = 181
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I L + L V+++ IP E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAVSGKEAKLKEYIEAELKHNELLSTHVSQVLIPVEKHASLRNGKRVVKEKISLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A + V HT++ P +GFLG + PSPV SEI ++ E +
Sbjct: 67 GYIFVEANLVGDVAHTLRFMPNCLGFLGGLDEPSPVPQSEINRMLGTAEVTEIEDTVDIP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|253752634|ref|YP_003025775.1| transcription antitermination factor [Streptococcus suis SC84]
gi|253754460|ref|YP_003027601.1| transcription antitermination factor [Streptococcus suis P1/7]
gi|253756393|ref|YP_003029533.1| transcription antitermination factor [Streptococcus suis BM407]
gi|330833594|ref|YP_004402419.1| transcription antitermination factor [Streptococcus suis ST3]
gi|251816923|emb|CAZ52572.1| transcription antitermination factor [Streptococcus suis SC84]
gi|251818857|emb|CAZ56700.1| transcription antitermination factor [Streptococcus suis BM407]
gi|251820706|emb|CAR47468.1| transcription antitermination factor [Streptococcus suis P1/7]
gi|329307817|gb|AEB82233.1| transcription antitermination factor [Streptococcus suis ST3]
Length = 179
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEF-- 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + DG F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 125 DIDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQIAEL 179
>gi|330997390|ref|ZP_08321241.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
gi|329570764|gb|EGG52480.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
Length = 181
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+++ S E K E I + + V+++ IP+E+VV VR G+++ ER
Sbjct: 5 EMKWYVMRAVSGKESKVKEYIDAEIKKGDFGKFVSQVLIPTEKVVQVRNGKRIVKERNHL 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL++A + ++ +++TP V+GFLG + NP+P+ SE+ ++ V+ P
Sbjct: 65 PGYVLVEAALVGEIPVLLRNTPNVLGFLGESNSNPTPLRQSEVNRLLGAVDEMQDVPEEV 124
Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + GE V V++GPF+ F+ +++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 LIPYAEGETVKVTEGPFSGFSAVIEEVNNEKKKLKVMVKIFGRKTPLELGFMQVEK 180
>gi|329116684|ref|ZP_08245401.1| transcription termination/antitermination factor NusG
[Streptococcus parauberis NCFD 2020]
gi|326907089|gb|EGE54003.1| transcription termination/antitermination factor NusG
[Streptococcus parauberis NCFD 2020]
Length = 179
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLLRAQTYNMLDNILRVEIPTQTVNVEKNGQSKEIEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRAILLSMGQTVD--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 125 DTNIKVGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETIAEVELYQIAEL 179
>gi|222153827|ref|YP_002563004.1| transcription antitermination protein NusG [Streptococcus uberis
0140J]
gi|222114640|emb|CAR43677.1| transcription antitermination factor [Streptococcus uberis 0140J]
Length = 180
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVD--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 125 DTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQIAEL 179
>gi|288926253|ref|ZP_06420178.1| transcription termination/antitermination factor NusG [Prevotella
buccae D17]
gi|315606519|ref|ZP_07881534.1| transcription termination/antitermination factor NusG [Prevotella
buccae ATCC 33574]
gi|288336944|gb|EFC75305.1| transcription termination/antitermination factor NusG [Prevotella
buccae D17]
gi|315251925|gb|EFU31899.1| transcription termination/antitermination factor NusG [Prevotella
buccae ATCC 33574]
Length = 182
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRF 60
T +WY+++ S E K E I + + L V++I IP E+ S+R G++V E+
Sbjct: 5 TNQWYVLKAVSGKEAKVKEYIEAEMKHNELLASHVSQILIPMEKHASLRNGKRVIKEKVS 64
Query: 61 FPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGY+ ++A + + ++ P V+GFLG +NPSPV SEI ++ E
Sbjct: 65 LPGYLFVEANLKGGDIASMLRFVPNVLGFLGGLDNPSPVPQSEINRMLGTAEDTELEENL 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL Y QVEK
Sbjct: 125 DIPFVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELGYMQVEK 180
>gi|87123508|ref|ZP_01079359.1| NusG antitermination factor [Synechococcus sp. RS9917]
gi|86169228|gb|EAQ70484.1| NusG antitermination factor [Synechococcus sp. RS9917]
Length = 220
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP V V+K G + ++E + F
Sbjct: 36 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVF 95
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 96 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 154
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 155 -AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 213
Query: 171 NQVEK 175
+QV K
Sbjct: 214 SQVSK 218
>gi|237738810|ref|ZP_04569291.1| transcription antitermination protein nusG [Fusobacterium sp.
2_1_31]
gi|229423913|gb|EEO38960.1| transcription antitermination protein nusG [Fusobacterium sp.
2_1_31]
Length = 193
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ L +VT I +P E + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + V++ I++T V GF+G G +P P+ D E+++I N
Sbjct: 67 AYVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|24380295|ref|NP_722250.1| transcription antitermination protein NusG [Streptococcus mutans
UA159]
gi|290579732|ref|YP_003484124.1| putative transcription antitermination factor [Streptococcus mutans
NN2025]
gi|24378309|gb|AAN59556.1|AE015019_1 putative transcription antitermination factor [Streptococcus mutans
UA159]
gi|254996631|dbj|BAH87232.1| putative transcription antitermination factor [Streptococcus mutans
NN2025]
Length = 178
Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEVEENRFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V +
Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVD--II 123
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T EL Q+ ++
Sbjct: 124 DTNIKEGDVVQIIDGAFVGQEGRVVEI--ENNKVKIMINMFGAETQAELELYQIAEL 178
>gi|296119180|ref|ZP_06837750.1| transcription antitermination protein NusG [Corynebacterium
ammoniagenes DSM 20306]
gi|295967806|gb|EFG81061.1| transcription antitermination protein NusG [Corynebacterium
ammoniagenes DSM 20306]
Length = 299
Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + ++ +P E+V+ + G+K +R+ PG
Sbjct: 104 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQVLENKDGKKKLVKRKLLPG 163
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
YVL++ + D + ++DTP V F+G N +PV ++ +
Sbjct: 164 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLLPKEGAAAAGDAAANA 223
Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + + + VGE V + GPFAS + + +DEE ++ V IFG
Sbjct: 224 AEGEQVISMPEKEEAKKYAHDYVVGEAVTILSGPFASVSATISEIDEETGKMVGLVSIFG 283
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL+ ++E+I
Sbjct: 284 RETPVELSPTEIERI 298
>gi|148240711|ref|YP_001226098.1| transcription antitermination protein NusG [Synechococcus sp. WH
7803]
gi|147849250|emb|CAK24801.1| Transcription antiterminator protein NusG [Synechococcus sp. WH
7803]
Length = 222
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + F
Sbjct: 38 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKIKKDGSRQSTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+QV K
Sbjct: 216 SQVSK 220
>gi|159902764|ref|YP_001550108.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9211]
gi|159887940|gb|ABX08154.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9211]
Length = 219
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + F
Sbjct: 35 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVF 94
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E+ I +
Sbjct: 95 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRPTGRGRGHIKPRPLSREEVNRIFKRT 154
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ ++ V + G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 155 --SEKKTVVKLDLSEGDQILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 212
Query: 171 NQVEK 175
+Q+ K
Sbjct: 213 SQINK 217
>gi|55820313|ref|YP_138755.1| transcription antitermination protein NusG [Streptococcus
thermophilus LMG 18311]
gi|55822203|ref|YP_140644.1| transcription antitermination protein NusG [Streptococcus
thermophilus CNRZ1066]
gi|116627154|ref|YP_819773.1| transcription antitermination protein NusG [Streptococcus
thermophilus LMD-9]
gi|228476487|ref|ZP_04061177.1| transcription termination/antitermination factor NusG
[Streptococcus salivarius SK126]
gi|312864059|ref|ZP_07724295.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis F0396]
gi|322517533|ref|ZP_08070402.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis ATCC 49124]
gi|55736298|gb|AAV59940.1| transcription antitermination factor [Streptococcus thermophilus
LMG 18311]
gi|55738188|gb|AAV61829.1| transcription antitermination factor [Streptococcus thermophilus
CNRZ1066]
gi|116100431|gb|ABJ65577.1| Transcription antiterminator [Streptococcus thermophilus LMD-9]
gi|228251908|gb|EEK10954.1| transcription termination/antitermination factor NusG
[Streptococcus salivarius SK126]
gi|311100472|gb|EFQ58679.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis F0396]
gi|312277631|gb|ADQ62288.1| Transcription antitermination protein nusG [Streptococcus
thermophilus ND03]
gi|322123793|gb|EFX95367.1| transcription termination/antitermination factor NusG
[Streptococcus vestibularis ATCC 49124]
Length = 179
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVD--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+VG+ V + DG F G V + E ++V + + +FG T EL Q+ ++
Sbjct: 125 DTNIKVGDVVQIIDGAFMGQEGRVVEI--ENNKVKIMINMFGSETAAELELYQIAEL 179
>gi|78213980|ref|YP_382759.1| transcription antitermination protein NusG [Synechococcus sp.
CC9605]
gi|78198439|gb|ABB36204.1| NusG antitermination factor [Synechococcus sp. CC9605]
Length = 222
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|325977351|ref|YP_004287067.1| transcription antitermination protein nusG [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177279|emb|CBZ47323.1| Transcription antitermination protein nusG [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 183
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VI 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V + E ++V + + +FG T EL Q+ ++
Sbjct: 129 DTNIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQIAEL 183
>gi|313890368|ref|ZP_07823999.1| transcription termination/antitermination factor NusG
[Streptococcus pseudoporcinus SPIN 20026]
gi|313121211|gb|EFR44319.1| transcription termination/antitermination factor NusG
[Streptococcus pseudoporcinus SPIN 20026]
Length = 204
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 31 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNIEKNGQTKEVEENRFP 90
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + + V
Sbjct: 91 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTID--VF 148
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 149 DTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLTLNMFGSETIAEVELYQIAEL 203
>gi|195977307|ref|YP_002122551.1| transcription antitermination protein NusG [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195974012|gb|ACG61538.1| transcription antitermination protein NusG [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 181
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 67 GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVD--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 125 DTNIKEGDVVQIIDGAFIGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQIAEL 179
>gi|162447021|ref|YP_001620153.1| transcription antitermination protein [Acholeplasma laidlawii
PG-8A]
gi|161985128|gb|ABX80777.1| transcription antitermination protein [Acholeplasma laidlawii
PG-8A]
Length = 182
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 95/178 (53%), Gaps = 7/178 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
RWY++Q YS EK E + R+ G+ + +I +P E + + G+ R+ +
Sbjct: 8 RRWYVIQTYSGYEKAVKEDLARRVDSMGMQDYIYQIIVPEETYIEKNKDGKDKEKVRQIY 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYV ++ ++TD + +++TP+V GFLG+ G P P+ + EI I+ +
Sbjct: 68 PGYVFVEMLVTDDSWFVVRNTPRVTGFLGSSGGGTKPVPLLEEEIRPILLKANVIS---K 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + +G+ V + G F G V VD ++ ++ V++ +FGR TP E+ + Q ++I
Sbjct: 125 PNYEYLLGKEVQIISGAFEGQIGRVSYVDADQEKMMVDIDVFGRATPTEIDFTQFKEI 182
>gi|323344615|ref|ZP_08084839.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella oralis ATCC 33269]
gi|323093885|gb|EFZ36462.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella oralis ATCC 33269]
Length = 181
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++ S E K E I + + L V ++ IP E+ S+R G++V E+
Sbjct: 6 KNWYVLRAVSGKEAKLKEYIEAEMKHNELLASHVYQVLIPVEKHASLRNGKRVEKEKISL 65
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV ++A++ V HT++ P +GFLG ++PSPV S+I ++ E V
Sbjct: 66 PGYVFVEAILKGDVAHTLRFMPNCLGFLGGLDDPSPVPQSDINRMLGAAEETELINDVDV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYTVDETVKVIDGPFSGFSGVIEEVNTEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|313159496|gb|EFR58859.1| transcription termination/antitermination factor NusG [Alistipes
sp. HGB5]
Length = 186
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 109/180 (60%), Gaps = 7/180 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ E K E I + + L+ ++++ IP+E+V ++R G+KV+ E+ +P
Sbjct: 6 KQWYVVRAIGGKENKVKEYIEAEIRHNNLEEYISQVLIPTEKVYTIRNGKKVSKEKVSYP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVE-AAVQ 115
GYVL++A ++ I++TP V+GFLG + N +P+ E+ I+ +V+
Sbjct: 66 GYVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDEMNAM 125
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL + QVEK
Sbjct: 126 EEENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELGFTQVEK 185
>gi|284050920|ref|ZP_06381130.1| transcription antitermination protein NusG [Arthrospira platensis
str. Paraca]
gi|291565933|dbj|BAI88205.1| transcription antitermination protein NusG [Arthrospira platensis
NIES-39]
Length = 223
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP + + +RK G + + + + FP
Sbjct: 29 RWYAVQVASGCEKRVKLNLDQRVQTLDVADRILKVEIPQTQAIKLRKDGSRQHGQEKVFP 88
Query: 63 GYVLIKAVMT-----------DKVYHTIKDTPKVIGFLGTGEN-----------PSPVTD 100
GYVLI+ + D+ + +K+TP VI F+G + P P++
Sbjct: 89 GYVLIQMKLNWNNELNQWDVDDEAWQVVKNTPHVINFVGAEQKRHSGRGRGHVKPLPLSP 148
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
SE++ I Q + Q V V G+ + V GPF F G V V E++++ + IF
Sbjct: 149 SEVDRIFRQTQQ--QETVVKVEMASGDHILVLSGPFKDFEGDVIEVSPERNKLKALLSIF 206
Query: 161 GRVTPVELAYNQVEK 175
GR TPVEL +NQVEK
Sbjct: 207 GRDTPVELEFNQVEK 221
>gi|328949288|ref|YP_004366625.1| NusG antitermination factor [Treponema succinifaciens DSM 2489]
gi|328449612|gb|AEB15328.1| NusG antitermination factor [Treponema succinifaciens DSM 2489]
Length = 185
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+Q YS E+K ++ L+ LD ++V ++ +P E VV + G+K
Sbjct: 1 MARSWYILQTYSGYEQKIQRTLATMLTEQKLDSNIVFQVKVPMEEVVEISNGKKHVRNNL 60
Query: 60 FFPGYVLIKAVMTDKVY----HTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA- 112
PGY++I+ + + I+ V GF+G E P P++ E ++I+
Sbjct: 61 ILPGYIMIEMDLPQIGWKNTCSLIRRVQGVTGFVGVKPSEKPRPISTDEAKNILQMAGEL 120
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
++ FEVGE V +++GPFA+F+G +++++ EK+++ V V IFGR TPVE+
Sbjct: 121 KGEKQVRIKQNFEVGETVKITEGPFATFSGAIEDINTEKNKLRVNVQIFGRATPVEVDVL 180
Query: 172 QVEKI 176
QVEKI
Sbjct: 181 QVEKI 185
>gi|72383408|ref|YP_292763.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. NATL2A]
gi|72003258|gb|AAZ59060.1| transcription antitermination protein nusG [Prochlorococcus marinus
str. NATL2A]
Length = 222
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY +QV S+CEKK ++ R G+ + EI IP V ++K G + +E + F
Sbjct: 38 ARWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E+ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V + E G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+Q+ K
Sbjct: 216 SQITK 220
>gi|317504004|ref|ZP_07962011.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella salivae DSM 15606]
gi|315664864|gb|EFV04524.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella salivae DSM 15606]
Length = 181
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I + + L V+++ IP E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAVSGKEAKLKEYIDAEMKHNELLSTHVSQVLIPMEKHASLRNGKRVVKEKISLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++A + V HT++ P +GFLG +NPSPV SEI ++ E V
Sbjct: 67 GYIFVEANLVGDVVHTLRFMPNCLGFLGGLDNPSPVLQSEINRMLGTAENTEIEGTVDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V E V V DGPF+ F+G+++ ++ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YVVDETVKVIDGPFSGFSGVIEEINAEKHKLKVMVKIFGRKTPLELSFMQVEK 179
>gi|124005807|ref|ZP_01690645.1| transcription termination/antitermination factor NusG [Microscilla
marina ATCC 23134]
gi|123988490|gb|EAY28131.1| transcription termination/antitermination factor NusG [Microscilla
marina ATCC 23134]
Length = 189
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ ++ EKKA + +++ V ++ IPSE+V +R G+K E+ FFPG
Sbjct: 5 KWYVVRAIASKEKKAKTYLENEIAKREFHEHVPQVLIPSEKVYEMRNGKKRLREKSFFPG 64
Query: 64 YVLIKAVM------TDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAA 113
Y++++A + T ++ H I P +IGFLG T ++P + SE+ I+ +V+ +
Sbjct: 65 YIMVQANLEKDNPTTGELIHMITSIPGIIGFLGATGSTSKDPVALRQSEVNRILGKVDES 124
Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ V F VGE V V DGPF F G V+ V EE+ +++V V IFGR TPVEL Y+Q
Sbjct: 125 AEDDVKLETTFIVGETVKVIDGPFNGFTGTVEEVFEERQKINVMVKIFGRNTPVELNYSQ 184
Query: 173 VEK 175
VEK
Sbjct: 185 VEK 187
>gi|210623165|ref|ZP_03293615.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275]
gi|210153778|gb|EEA84784.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275]
Length = 180
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRF 60
+WY+V YS E K +I + G+++++T + +P+E VV KG + +R+
Sbjct: 6 EAKWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKV 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+P YVLIK ++TD+ ++ +++T V GF+G G P P+++ E+ + ++ A +
Sbjct: 66 YPSYVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEVIAMGIEL-PAQEVVGGD 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE G+ V + +G FA G V+ V+ EK V + IFGR +PV + +EKI
Sbjct: 125 VDFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIEKI 180
>gi|282889737|ref|ZP_06298276.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500311|gb|EFB42591.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 182
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+VQ S+ EKKA +++ G+ L+ + +P E+V V+ G + E+R +P
Sbjct: 2 HKWYVVQAISSQEKKAKKNLEEHREHKGMSELIERVVLPIEKVSEVKNGLQKVVEKRLWP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+LIK +TD+ + +K+T V+ FLG G+ P+ +T+ E++ I+ +E Q
Sbjct: 62 GYLLIKMTLTDESWSYVKNTIGVVDFLG-GDQPAALTEKEVDEILKDLEDKKQTVTQRHK 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
F VG+RV + DG F +F G V V +K R+ V V IFGR T V +L + QVE+I
Sbjct: 121 FNVGDRVKIVDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 175
>gi|307565696|ref|ZP_07628165.1| transcription termination/antitermination factor NusG [Prevotella
amnii CRIS 21A-A]
gi|307345522|gb|EFN90890.1| transcription termination/antitermination factor NusG [Prevotella
amnii CRIS 21A-A]
Length = 181
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I +L S L V E+ +P E+ S+R G++V E+ P
Sbjct: 7 KWYVLRAISGKESKVKEYIDAQLRMNSKLAERVFEVLLPMEKHTSLRNGKRVVKEKLSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++A MT V T++ P V+GFLG P+PV +++ ++ VE + V
Sbjct: 67 GYVLVQANMTPDVASTLRFIPNVLGFLGGTSEPTPVRQADVNRLLGNVEDVEAGNMQDVP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V +GPF+ F+G++++V+ EK ++ V V+IFGR P+EL++ QV +
Sbjct: 127 YNVGESVKVIEGPFSGFHGVIEDVNTEKHKLKVMVMIFGRQNPLELSFMQVAR 179
>gi|281422263|ref|ZP_06253262.1| transcription termination/antitermination factor NusG [Prevotella
copri DSM 18205]
gi|281403768|gb|EFB34448.1| transcription termination/antitermination factor NusG [Prevotella
copri DSM 18205]
Length = 180
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S E K E I + + L V+++ IP E+ +VR G++V E+ P
Sbjct: 7 KWYVLKAVSGKEAKVKEYIEAEMKHNDLLAANVSQVLIPVEKHATVRNGKRVVKEKVSLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++A + V HT++ P V+GFLG + P+PV +I ++ E
Sbjct: 67 GYVFVEAKLKGDVAHTLRFLPNVLGFLGGLDEPTPVPQRDINRMLGSAEETEFEENLDCP 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ V + V V +GPF+ F+GIV+ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YLVNDTVKVMEGPFSGFSGIVEEVNAEKHKLKVTVKIFGRKTPLELGFMQVEK 179
>gi|297620824|ref|YP_003708961.1| Transcription antitermination protein nusG [Waddlia chondrophila
WSU 86-1044]
gi|297376125|gb|ADI37955.1| Transcription antitermination protein nusG [Waddlia chondrophila
WSU 86-1044]
Length = 180
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W++V V S EKK ++I + G+ L+ + +P E + V+KG++ E+R +P
Sbjct: 2 HNWFVVHVLSAQEKKVKKAIEEQRDLKGMTDLIDIVLLPVENISEVKKGQQKVVEKRMWP 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+L+K +TD+ + I D P VIGFLG G+ P+P+T E++ I+ +E ++ V
Sbjct: 62 GYLLVKMTLTDESWGYICDVPGVIGFLG-GDQPTPLTPQEVDEILQDIEEKKEKVVQKHQ 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
FEVG+ V + DG F +F G V +V +K R+ V+V IFGR T V +L + QVE++
Sbjct: 121 FEVGDNVKIIDGVFVNFVGTVTDVQPDKGRLSVQVSIFGRETQVDDLEFVQVEEV 175
>gi|167950492|ref|ZP_02537566.1| NusG antitermination factor [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 148
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
++ E+ +P+E VV +R G++ SER+FFPGYVL++ MTD+ +H +KD PKV+GF+G
Sbjct: 1 MEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEMTDETWHLVKDVPKVLGFIG 60
Query: 91 TGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
P+TD E + I+ +V+ V++P V FE GE V V DGPF F+G+V+ VD
Sbjct: 61 GYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVVRVVDGPFNDFSGVVEEVDY 120
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
EKSR+ V V+IFGR TPV+L + QVEK
Sbjct: 121 EKSRLKVSVLIFGRSTPVDLEFGQVEK 147
>gi|322412789|gb|EFY03697.1| transcription antitermination protein NusG [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 179
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + + V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTID--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 125 DTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLLLNMFGSETVAEVELYQIAEL 179
>gi|284039331|ref|YP_003389261.1| NusG antitermination factor [Spirosoma linguale DSM 74]
gi|283818624|gb|ADB40462.1| NusG antitermination factor [Spirosoma linguale DSM 74]
Length = 186
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 106/180 (58%), Gaps = 8/180 (4%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++ S EKK + + R LD ++ ++ IP+E+V +R G+K E+ FFPG
Sbjct: 5 QWYVIRAVSGQEKKIKSYLDNEIIRQKLDEVIPQVLIPAEKVYEMRNGKKRVREKSFFPG 64
Query: 64 YVLIKAVM-TDKVYHTIKDTPKVIGFLGT------GENPSPVTDSEIEHIMNQV-EAAVQ 115
Y+LI A + ++ I + P V+GFLG + P P+ +E+ I+ +V E A +
Sbjct: 65 YILISADLGNNRALDMILNMPGVLGFLGNSQAGTTSKVPVPLRQAEVNRILGKVDEEAQE 124
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + GE V V DGPF F G V+ V +++ +V+V V IFGR TPVEL+Y QVEK
Sbjct: 125 VAAPTVAYIKGESVKVVDGPFGGFIGTVEEVFDDRKKVNVVVKIFGRNTPVELSYAQVEK 184
>gi|33864351|ref|NP_895911.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9313]
gi|33641131|emb|CAE22261.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9313]
Length = 223
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY +QV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + F
Sbjct: 39 ARWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVF 98
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E++ I +
Sbjct: 99 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKR- 157
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ + V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 158 -AAEKKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 216
Query: 171 NQVEK 175
+Q+ K
Sbjct: 217 SQINK 221
>gi|325280613|ref|YP_004253155.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
gi|324312422|gb|ADY32975.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
Length = 182
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 114/176 (64%), Gaps = 3/176 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+++V EKK E I ++ GL V+++ IP+E++ VR G+K++ ER FFP
Sbjct: 6 KRWYVLRVIGGKEKKVKEYIENEVASLGLQDYVSQVLIPTEKIYQVRNGKKISKERNFFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
GYV+I+A + ++ H ++D VIGFLG G +P P+ SEI I+ V+ ++P
Sbjct: 66 GYVMIEAALVGEIPHMLRDITNVIGFLGETKGGDPVPMRQSEINRILGTVDELSEQPEEI 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
++ + VGE V V+DGPF F G+++ V+ +K RV V V +FGR TP+EL++ QVEK
Sbjct: 126 NIPYVVGESVKVTDGPFNGFTGVIEEVNNDKKRVKVIVKVFGRQTPLELSFMQVEK 181
>gi|320547809|ref|ZP_08042093.1| transcription termination/antitermination factor NusG
[Streptococcus equinus ATCC 9812]
gi|320447569|gb|EFW88328.1| transcription termination/antitermination factor NusG
[Streptococcus equinus ATCC 9812]
Length = 183
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VV 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG FA G V + E ++V + + +FG T EL Q+ ++
Sbjct: 129 DTNIKAGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQIAEL 183
>gi|149922222|ref|ZP_01910660.1| transcription antitermination protein NusG [Plesiocystis pacifica
SIR-1]
gi|149816962|gb|EDM76447.1| transcription antitermination protein NusG [Plesiocystis pacifica
SIR-1]
Length = 176
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 59/169 (34%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Query: 10 VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKA 69
+S E +S+ R+ ++ L+ +I +PSE+V+ R R+V R+FFPGY+ ++
Sbjct: 3 TFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFVRM 62
Query: 70 VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----VQRPVSSVFFEV 125
+T +H +K+TPKV GFL +G+ P PV+ E++ ++ + E + V + + V
Sbjct: 63 RLTKPAWHLVKNTPKVSGFLSSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDIDYSV 122
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G++V V G FA+F+G V+ V+ EK ++ + V IFGR T VE+ +++VE
Sbjct: 123 GDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171
>gi|124024994|ref|YP_001014110.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. NATL1A]
gi|123960062|gb|ABM74845.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. NATL1A]
Length = 222
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY +QV S+CEKK ++ R G+ + EI IP V ++K G + +E + F
Sbjct: 38 ARWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E+ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V + E G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 157 -AAEKKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+Q+ K
Sbjct: 216 SQITK 220
>gi|260435130|ref|ZP_05789100.1| transcription termination/antitermination factor NusG
[Synechococcus sp. WH 8109]
gi|260413004|gb|EEX06300.1| transcription termination/antitermination factor NusG
[Synechococcus sp. WH 8109]
Length = 222
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + FP
Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I +
Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKR-- 156
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
AA ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++
Sbjct: 157 AAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216
Query: 172 QVEK 175
Q+ K
Sbjct: 217 QISK 220
>gi|15674369|ref|NP_268543.1| transcription antitermination protein NusG [Streptococcus pyogenes
M1 GAS]
gi|19745330|ref|NP_606466.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS8232]
gi|21909663|ref|NP_663931.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS315]
gi|71909952|ref|YP_281502.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS5005]
gi|139473014|ref|YP_001127729.1| transcription antitermination protein NusG [Streptococcus pyogenes
str. Manfredo]
gi|57014085|sp|P68893|NUSG_STRP1 RecName: Full=Transcription antitermination protein nusG
gi|57014086|sp|P68894|NUSG_STRP3 RecName: Full=Transcription antitermination protein nusG
gi|57014087|sp|P68895|NUSG_STRP8 RecName: Full=Transcription antitermination protein nusG
gi|57015406|sp|Q5XE43|NUSG_STRP6 RecName: Full=Transcription antitermination protein nusG
gi|13621457|gb|AAK33264.1| putative transcription antitermination factor [Streptococcus
pyogenes M1 GAS]
gi|19747432|gb|AAL96965.1| putative transcription antitermination factor [Streptococcus
pyogenes MGAS8232]
gi|21903845|gb|AAM78734.1| putative transcription antitermination factor [Streptococcus
pyogenes MGAS315]
gi|56403933|dbj|BAD77788.1| hypothetical TRANSCRIPTION ANTITERMINATION PROTEIN [Streptococcus
dysgalactiae subsp. equisimilis]
gi|71852734|gb|AAZ50757.1| transcription antitermination protein [Streptococcus pyogenes
MGAS5005]
gi|134271260|emb|CAM29476.1| transcription antitermination factor [Streptococcus pyogenes str.
Manfredo]
Length = 179
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + + V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTID--VF 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 125 DTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQIAEL 179
>gi|126640370|ref|YP_001083354.1| transcription antitermination protein [Acinetobacter baumannii ATCC
17978]
Length = 160
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 1/160 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPGYVL++ M D +H
Sbjct: 1 MRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPGYVLVEMEMNDDTWHI 60
Query: 79 IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+K+ PKV+GF+G E P+P+T E + I+ +V + P FE GE + V DGPF
Sbjct: 61 VKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTMFEPGEELLVIDGPFT 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F G+V+ V +KSR+ + + +F R T VEL + QVEK +
Sbjct: 121 DFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 160
>gi|189502709|ref|YP_001958426.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498150|gb|ACE06697.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus
5a2]
Length = 186
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+WY+++V S EK + L R L V +I IPSE++ +R G++ ER FFP
Sbjct: 5 PKWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFP 64
Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLG-----TGENPSPVTDSEIEHIMNQVEAAVQR 116
GY+++ A ++D +V HTIKD P +GFLG + P P+ + EI I+ +V+ +
Sbjct: 65 GYLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAED 124
Query: 117 PV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V + DGPF+ F G ++ V EE+ +++V V IF R TP+EL Y QVEK
Sbjct: 125 DNGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVEK 184
Query: 176 IV 177
I+
Sbjct: 185 IL 186
>gi|33239683|ref|NP_874625.1| transcription antitermination protein NusG [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237208|gb|AAP99277.1| Transcription antiterminator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 219
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY +QV S+CEKK ++ R G+ + + EI IP V ++K G + ++E + F
Sbjct: 35 ARWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVF 94
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + ++ TP VI F+G + P P++ E+ I +
Sbjct: 95 PGYVLVRMILDEDTMMAVRSTPNVINFVGAEDRRITGRGRGHIKPRPLSRQEVNRIFKR- 153
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V + G+++ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 154 -AAEKKTVVKLDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 212
Query: 171 NQVEK 175
+Q+ K
Sbjct: 213 SQISK 217
>gi|28895041|ref|NP_801391.1| transcription antitermination protein NusG [Streptococcus pyogenes
SSI-1]
gi|50913531|ref|YP_059503.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS10394]
gi|71902802|ref|YP_279605.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS6180]
gi|94987771|ref|YP_595872.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS9429]
gi|94989649|ref|YP_597749.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS10270]
gi|94991642|ref|YP_599741.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS2096]
gi|94993540|ref|YP_601638.1| transcription antitermination protein NusG [Streptococcus pyogenes
MGAS10750]
gi|209558715|ref|YP_002285187.1| transcription antitermination protein NusG [Streptococcus pyogenes
NZ131]
gi|251783420|ref|YP_002997725.1| transcription antitermination protein NusG [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|306828165|ref|ZP_07461428.1| transcription termination/antitermination factor NusG
[Streptococcus pyogenes ATCC 10782]
gi|28810286|dbj|BAC63224.1| putative transcription antitermination factor [Streptococcus
pyogenes SSI-1]
gi|50902605|gb|AAT86320.1| Transcription antitermination protein [Streptococcus pyogenes
MGAS10394]
gi|71801897|gb|AAX71250.1| transcription antitermination protein [Streptococcus pyogenes
MGAS6180]
gi|94541279|gb|ABF31328.1| transcription antitermination protein [Streptococcus pyogenes
MGAS9429]
gi|94543157|gb|ABF33205.1| Transcription antitermination protein nusG [Streptococcus pyogenes
MGAS10270]
gi|94545150|gb|ABF35197.1| Transcription antitermination protein nusG [Streptococcus pyogenes
MGAS2096]
gi|94547048|gb|ABF37094.1| Transcription antitermination protein nusG [Streptococcus pyogenes
MGAS10750]
gi|209539916|gb|ACI60492.1| Transcription antitermination protein NusG [Streptococcus pyogenes
NZ131]
gi|242392052|dbj|BAH82511.1| transcription antitermination protein [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|304429702|gb|EFM32748.1| transcription termination/antitermination factor NusG
[Streptococcus pyogenes ATCC 10782]
gi|323128169|gb|ADX25466.1| transcription antitermination protein NusG [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 184
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 12 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + + V
Sbjct: 72 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTID--VF 129
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F G V + E ++V + + +FG T E+ Q+ ++
Sbjct: 130 DTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQIAEL 184
>gi|329121897|ref|ZP_08250511.1| transcription antitermination factor NusG [Dialister micraerophilus
DSM 19965]
gi|327467694|gb|EGF13190.1| transcription antitermination factor NusG [Dialister micraerophilus
DSM 19965]
Length = 207
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K E++ ++ G+D + +I +P V+ G K R+ FPG
Sbjct: 37 RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LI+ + D ++ +++TP V GF+GT P P++D E E I + ++ +
Sbjct: 97 YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERI---IAGDNKKVSVTTEA 153
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+VG+++ ++ GPFA + +V V ++K V ++ FG T +EL
Sbjct: 154 KVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIELE 199
>gi|313892111|ref|ZP_07825706.1| transcription termination/antitermination factor NusG [Dialister
microaerophilus UPII 345-E]
gi|313119466|gb|EFR42663.1| transcription termination/antitermination factor NusG [Dialister
microaerophilus UPII 345-E]
Length = 207
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ YS E K E++ ++ G+D + +I +P V+ G K R+ FPG
Sbjct: 37 RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LI+ + D ++ +++TP V GF+GT P P++D E E I + ++ +
Sbjct: 97 YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERI---IAGDNKKVSVTTEA 153
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+VG+++ ++ GPFA + +V V ++K V ++ FG T +EL
Sbjct: 154 KVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIELE 199
>gi|227832183|ref|YP_002833890.1| transcription antitermination protein [Corynebacterium aurimucosum
ATCC 700975]
gi|262183965|ref|ZP_06043386.1| transcription antitermination protein NusG [Corynebacterium
aurimucosum ATCC 700975]
gi|227453199|gb|ACP31952.1| transcription antitermination protein [Corynebacterium aurimucosum
ATCC 700975]
Length = 302
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 21/194 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI+Q YS E K ++ R ++ + E+ +P E+ + + G+K +R+ PG
Sbjct: 108 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQAIEKKDGKKKVVKRKLLPG 167
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
YVL++ + D + ++DTP V F+G N +PV ++ +
Sbjct: 168 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKIRDVAKFLMPNDPTVSPEASAADS 227
Query: 110 -------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
+ + FEVGE V + GP AS + + +D E ++ V IFGR
Sbjct: 228 EGEQVVAMPEKEAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 287
Query: 163 VTPVELAYNQVEKI 176
TPVEL+ ++E+I
Sbjct: 288 ETPVELSPTEIERI 301
>gi|317968194|ref|ZP_07969584.1| transcription antitermination protein NusG [Synechococcus sp.
CB0205]
Length = 222
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+D + EI IP V ++K G + ++E + F
Sbjct: 38 ARWYAVQVASSCEKKVKATLEQRAVTLGVDKRILEIEIPQTPAVKLKKDGSRTSTEEKVF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E++ I +
Sbjct: 98 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKVRGHIKPRPLSRQEVDRIFKR- 156
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++PV V G+++ V+ GPF F G V V +++++ + IFGR TPVEL +
Sbjct: 157 -AAEKKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGDRNKLKALLSIFGRETPVELEF 215
Query: 171 NQVEK 175
+Q+ K
Sbjct: 216 SQISK 220
>gi|86606432|ref|YP_475195.1| transcription antitermination protein NusG [Synechococcus sp.
JA-3-3Ab]
gi|86554974|gb|ABC99932.1| transcription termination/antitermination factor NusG
[Synechococcus sp. JA-3-3Ab]
Length = 223
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWY VQV S CE K ++ R + + + E+ IP + R G++ E + FP
Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ + D + +K TP VI F+GT E P P++ SE++ I + VE
Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V+ + G+R+ V GPF F G V +V E+ ++ + IFGR TPVEL +
Sbjct: 160 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217
Query: 172 QVEK 175
QV K
Sbjct: 218 QVRK 221
>gi|325853515|ref|ZP_08171347.1| transcription termination/antitermination factor NusG [Prevotella
denticola CRIS 18C-A]
gi|327313170|ref|YP_004328607.1| transcription termination/antitermination factor NusG [Prevotella
denticola F0289]
gi|325484319|gb|EGC87247.1| transcription termination/antitermination factor NusG [Prevotella
denticola CRIS 18C-A]
gi|326944948|gb|AEA20833.1| transcription termination/antitermination factor NusG [Prevotella
denticola F0289]
Length = 182
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 5 EKKWYVLRAVSGKEGKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYVL++A M+ V T++ P V+GFLG +PSPV ++I ++ VE V
Sbjct: 65 SLPGYVLVQANMSPDVASTLRFMPNVLGFLGGMSDPSPVRQADINRLLGNVEETELDEVQ 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 DIPYLVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|206900373|ref|YP_002251089.1| transcription termination/antitermination factor NusG [Dictyoglomus
thermophilum H-6-12]
gi|206739476|gb|ACI18534.1| transcription termination/antitermination factor NusG [Dictyoglomus
thermophilum H-6-12]
Length = 176
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 2/174 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
P+W++V + E K + ++ + L+ V EI +P E+V++V+ G+K ++ F
Sbjct: 3 EPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ V + V I++T V GF+GT PS + E I +E RP V
Sbjct: 63 PGYLFIRMVEDEDVIRLIRNTTGVTGFVGTPGRPSTLNPQEEHWIKRFLEQKEIRPELKV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+RV + GPF + G V V EK V V + IFGR TP E+ + QVEK
Sbjct: 123 --KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVKVLLSIFGRETPTEIDHTQVEK 174
>gi|325269552|ref|ZP_08136168.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella multiformis DSM 16608]
gi|324988171|gb|EGC20138.1| anaerobic ribonucleoside-triphosphate reductase large subunit
[Prevotella multiformis DSM 16608]
Length = 182
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYVL++A MT V T++ P V+GFLG +PSPV ++I ++ VE V
Sbjct: 65 SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMADPSPVRQADINRLLGNVEDTELDEVQ 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 EVPYMVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|294781917|ref|ZP_06747249.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 1_1_41FAA]
gi|294481728|gb|EFG29497.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 1_1_41FAA]
Length = 193
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ L +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKIGTLQLRDVVTNILVPEEESIEIVRGKPKKIYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + V++ I++T V GF+G G +P P+ D E+++I N
Sbjct: 67 AYVMLEIEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|307243194|ref|ZP_07525367.1| transcription termination/antitermination factor NusG
[Peptostreptococcus stomatis DSM 17678]
gi|306493455|gb|EFM65435.1| transcription termination/antitermination factor NusG
[Peptostreptococcus stomatis DSM 17678]
Length = 180
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
+WY+V YS E K +I + G+++++ ++ +P+E VV+ + G++ +R+ F
Sbjct: 7 MQWYVVHTYSGHENKVKTTIENTVKNRGMENIIEQVIVPTEDVVTTTKTGKEKMVQRKVF 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YV++K MTD+ ++ +++T V GF+G G P P+T E+ + ++ A+ + +
Sbjct: 67 PSYVIVKMEMTDESWYVVRNTKGVTGFVGPGSKPVPLTVDEVRAMGIELPAS-KIVSGEI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V G F G V++V+ EK V V V FGR V L +EKI
Sbjct: 126 DLNPGDTVRVISGAFVDNVGEVEDVNIEKKEVKVYVNAFGRKALVTLGLENIEKI 180
>gi|330976628|gb|EGH76672.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 192
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 66/143 (46%), Positives = 96/143 (67%), Gaps = 1/143 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60
Query: 79 IKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+KDTP+V+GF+ GT + P+P+TD E E I+ +V +P FE GE V V+DGPFA
Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHVEVVIF 160
FNG V+ V+ EKSR+ V V+IF
Sbjct: 121 DFNGTVEEVNYEKSRIQVAVLIF 143
>gi|113474161|ref|YP_720222.1| transcription antitermination protein NusG [Trichodesmium
erythraeum IMS101]
gi|110165209|gb|ABG49749.1| transcription antitermination protein nusG [Trichodesmium
erythraeum IMS101]
Length = 224
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
RWY VQV S CEK+ ++ R+ + + ++ IP + +RK G + +SE + FP
Sbjct: 30 RWYAVQVASGCEKRVKTNLSQRIQTLDITDKIFKVEIPHIAAIKLRKDGSRQHSEEKVFP 89
Query: 63 GYVLIKAVMT-----------DKVYHTIKDTPKVIGFLGTGEN-----------PSPVTD 100
GYVL++ + D+ + +K TP VI F+G + P P++
Sbjct: 90 GYVLVQMKLNWHEEQKEWRIDDEAWQIVKSTPNVINFVGAEQKRRYGRGRGHVKPLPLSS 149
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
SE+E I + + Q P V G+ + V GPF F G V V E++++ + IF
Sbjct: 150 SEVERIFRRAQE--QEPYLKVTVAEGDHITVLSGPFKDFEGDVIEVSPERNKLKALLSIF 207
Query: 161 GRVTPVELAYNQVEK 175
GR TPVEL +NQVEK
Sbjct: 208 GRDTPVELEFNQVEK 222
>gi|257470018|ref|ZP_05634110.1| transcription antitermination protein nusG [Fusobacterium ulcerans
ATCC 49185]
gi|317064243|ref|ZP_07928728.1| transcription antitermination protein nusG [Fusobacterium ulcerans
ATCC 49185]
gi|313689919|gb|EFS26754.1| transcription antitermination protein nusG [Fusobacterium ulcerans
ATCC 49185]
Length = 199
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 19/192 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G+ +VT++ +P E + +G+K R+ FP
Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLGIGDIVTKVLVPEEETIEEVRGKKKTVARKIFP 66
Query: 63 GYVLIKAVMTDK-------------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
GYV+++ V T + ++ +++T V GF+G G +P P+ D E+ +I
Sbjct: 67 GYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVLNIFRV 126
Query: 110 VE------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ + V + F +GE V + G FA G V +D E+ +V V + +FGR+
Sbjct: 127 IGYDIPEEEKENKEVVKINFGLGEFVKILGGGFAGHEGKVAEIDMEQKKVKVMIEMFGRM 186
Query: 164 TPVELAYNQVEK 175
TPVE+ +N VEK
Sbjct: 187 TPVEVDFNSVEK 198
>gi|302345056|ref|YP_003813409.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica ATCC 25845]
gi|302149542|gb|ADK95804.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica ATCC 25845]
Length = 182
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V
Sbjct: 65 SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQ 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 NVPYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|171778894|ref|ZP_02919956.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282540|gb|EDT47964.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 183
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G+ E FP
Sbjct: 11 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFP 70
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + V V
Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVD--VV 128
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V + DG F+ G V + E ++V + + +FG T EL Q+ ++
Sbjct: 129 DTNIKAGDVVQIIDGAFSGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQIAEL 183
>gi|257452912|ref|ZP_05618211.1| transcription antitermination protein nusG [Fusobacterium sp.
3_1_5R]
gi|257466707|ref|ZP_05631018.1| transcription antitermination protein nusG [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917859|ref|ZP_07914099.1| transcription antitermination protein nusG [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059454|ref|ZP_07923939.1| transcription antitermination protein nusG [Fusobacterium sp.
3_1_5R]
gi|313685130|gb|EFS21965.1| transcription antitermination protein nusG [Fusobacterium sp.
3_1_5R]
gi|313691734|gb|EFS28569.1| transcription antitermination protein nusG [Fusobacterium
gonidiaformans ATCC 25563]
Length = 196
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW+++ YS EKK + ++ G+ +V++I +P E+ + +G++ R+ FP
Sbjct: 7 KRWFMIHTYSGYEKKVKTDLEQKIETLGMTEIVSKILVPEEKSTEIVRGKEKVVFRKIFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
GYV+++ + ++ +++T V GF+G G +P P+ + E+E+I
Sbjct: 67 GYVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRV 126
Query: 110 V---EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ E ++ + FEVG+ V V DG F + G V +D E+ +V + + IFGR+TPV
Sbjct: 127 IGYKEEVREQQLYKADFEVGDYVKVLDGGFVNKEGRVAEMDYEQGKVKIMIDIFGRMTPV 186
Query: 167 ELAYNQVEKI 176
E++++ VEK+
Sbjct: 187 EVSFSSVEKM 196
>gi|288803797|ref|ZP_06409224.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica D18]
gi|288333704|gb|EFC72152.1| transcription termination/antitermination factor NusG [Prevotella
melaninogenica D18]
Length = 182
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
+WY+++ S E K E I +L L V E+ +P E+ +VRK G++V E+
Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V
Sbjct: 65 SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQ 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+V + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K
Sbjct: 125 NVSYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180
>gi|154491726|ref|ZP_02031352.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC
43184]
gi|218264360|ref|ZP_03478217.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii
DSM 18315]
gi|154087967|gb|EDN87012.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC
43184]
gi|218222058|gb|EEC94708.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii
DSM 18315]
Length = 180
Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
++Y+++ S E K E + L + L V+++ IP+E+ +VR G+KV ER + P
Sbjct: 6 KKFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121
GYVL++A + +V H +++ P VIGFLG +NP P+ +E+ I+ V+ Q+ +
Sbjct: 66 GYVLVEAALVGEVAHRLRNIPNVIGFLGGSDNPVPLRPAEVSRILGTVDELQEQQDDLDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V ++ GPF F G+++ V+ EK ++ V V +FGR TP+EL Y QVEK
Sbjct: 126 QFYVGENVKITFGPFNGFTGVIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179
>gi|86608696|ref|YP_477458.1| transcription antitermination protein NusG [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557238|gb|ABD02195.1| transcription termination/antitermination factor NusG
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 221
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 14/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
RWY VQV S CE K ++ R + + + E+ IP + R G++ E + FP
Sbjct: 38 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 97
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
GYVL++ M D + +K TP VI F+GT E P P++ SE++ I + VE
Sbjct: 98 GYVLVRMDMNDDTWMVVKTTPNVINFVGTEEKRAYGRGRGHVTPRPLSQSEVQRIFSSVE 157
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V+ + G+R+ V GPF F G V V E+ ++ + IFGR TPVEL +
Sbjct: 158 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVEVSPERGKLKALISIFGRDTPVELEFG 215
Query: 172 QVEK 175
QV K
Sbjct: 216 QVRK 219
>gi|260880966|ref|ZP_05403283.2| transcription termination/antitermination factor NusG [Mitsuokella
multacida DSM 20544]
gi|260850064|gb|EEX70071.1| transcription termination/antitermination factor NusG [Mitsuokella
multacida DSM 20544]
Length = 184
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + +++ + +P E V ++ G+K R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLIHTANMGNMIFNVVVPVEDEVEIKDGKKKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+TD+E + I+ + Q +
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTDAEAKRILKSMGE-EQEHKPELDVA 136
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ G F ++ G V +D EK+R+ V V TP+EL ++QVE +
Sbjct: 137 VGDVVRINSGVFENYTGTVSEIDTEKARLKVIVE----ETPIELGFDQVETL 184
>gi|257462552|ref|ZP_05626963.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
gi|317060205|ref|ZP_07924690.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
gi|313685881|gb|EFS22716.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
Length = 194
Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW+++ YS EKK + ++ G+ +V++I +P E+ + +G++ R+ FP
Sbjct: 7 KRWFMIHTYSGYEKKVKTDLEQKIETLGMKEIVSKILVPEEKSTEIVRGKEKVVFRKIFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
GYV+++ + ++ +++T V GF+G G +P P+ + E+E+I
Sbjct: 67 GYVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRV 126
Query: 110 VE-AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ R F++G+ V V DG F + G V +D E+ +V + + IFGR+TPVE+
Sbjct: 127 IGYEQEVREFHKADFQIGDYVKVLDGAFVNKEGKVAEMDYEQGKVKIMIDIFGRMTPVEV 186
Query: 169 AYNQVEKI 176
+++ VEK+
Sbjct: 187 SFSSVEKM 194
>gi|217967757|ref|YP_002353263.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724]
gi|217336856|gb|ACK42649.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724]
Length = 176
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 2/174 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
P+W++V + E K + ++ + L+ V EI +P E+V++V+ G+K ++ F
Sbjct: 3 EPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVF 62
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ + + V I++T V GF+GT PS + E I +E RP V
Sbjct: 63 PGYLFIRMIEDEDVIRMIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKV 122
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+RV + GPF + G V V EK V V + IFGR TP E+ + QVEK
Sbjct: 123 --KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174
>gi|319759050|gb|ADV70992.1| transcription antitermination factor [Streptococcus suis JS14]
Length = 179
Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEF-- 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ V + D F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 125 DIDVKVGDTVRIIDSAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQIAEL 179
>gi|113953085|ref|YP_731916.1| transcription antitermination protein NusG [Synechococcus sp.
CC9311]
gi|113880436|gb|ABI45394.1| transcription termination/antitermination factor NusG
[Synechococcus sp. CC9311]
Length = 192
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+ + + EI IP V V+K G + ++E + F
Sbjct: 8 ARWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVF 67
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ V+ + ++ TP VI F+G + P P++ E++ I +
Sbjct: 68 PGYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKR- 126
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
AA ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL +
Sbjct: 127 -AAEKKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEF 185
Query: 171 NQVEK 175
+Q+ K
Sbjct: 186 SQISK 190
>gi|150008879|ref|YP_001303622.1| transcription anti-termination protein [Parabacteroides distasonis
ATCC 8503]
gi|255014707|ref|ZP_05286833.1| transcription anti-termination protein [Bacteroides sp. 2_1_7]
gi|256841127|ref|ZP_05546634.1| transcription termination/antitermination factor NusG
[Parabacteroides sp. D13]
gi|262383752|ref|ZP_06076888.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_33B]
gi|298375892|ref|ZP_06985848.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_19]
gi|301311924|ref|ZP_07217846.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 20_3]
gi|149937303|gb|ABR44000.1| transcription anti-termination protein [Parabacteroides distasonis
ATCC 8503]
gi|256736970|gb|EEU50297.1| transcription termination/antitermination factor NusG
[Parabacteroides sp. D13]
gi|262294650|gb|EEY82582.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 2_1_33B]
gi|298266929|gb|EFI08586.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_19]
gi|300830026|gb|EFK60674.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 20_3]
Length = 180
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
++Y+++ S E K E + L + L V+++ IP+E+ +VR G+KV ER + P
Sbjct: 6 KKFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121
GYVL++A + +V H +++ P VIGFLG + P P+ +E+ I+ V+ Q+ +
Sbjct: 66 GYVLVEAALVGEVAHRLRNIPNVIGFLGGSDTPVPLRPAEVNRILGTVDELQEQQEDLDI 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VGE V ++ GPF+ F GI++ V+ EK ++ V V +FGR TP+EL Y QVEK
Sbjct: 126 QFYVGESVKITFGPFSGFTGIIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179
>gi|310777978|ref|YP_003966311.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926]
gi|309747301|gb|ADO81963.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926]
Length = 198
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 18/191 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ +VT I +P E V +R+G+K R+ FP
Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLEKGEIVTRILVPEEESVELRRGKKKVVARKLFP 66
Query: 63 GYVLIKAVMT-------------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI--- 106
GYV+++ ++T ++ I++T V GF+G G +P P+ D E+E+I
Sbjct: 67 GYVMVEMIVTREESADGINFKVDSDAWYIIRNTNGVTGFVGVGSDPIPMEDEEVENIFRV 126
Query: 107 --MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+N + + + F VG+ V + +G + G V +D E RV V V +FGR+T
Sbjct: 127 IGLNDGDDKEVKETVQINFSVGDYVELLEGGLSGHGGKVAEIDMEHKRVKVMVEMFGRMT 186
Query: 165 PVELAYNQVEK 175
PVE+ ++ V+K
Sbjct: 187 PVEVGFDGVKK 197
>gi|227486738|ref|ZP_03917054.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC
51172]
gi|227235326|gb|EEI85341.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC
51172]
Length = 192
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V Y+ E + + I + + ++T+P+E V V+ K R+ FP
Sbjct: 26 ARWYVVHTYTGYENRVADKIQMMIDNEQNPD-IVDVTVPTEEYVEVKNNDKKVKTRKLFP 84
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV++K +T K ++ I++T V GF+G +P P+T +E+ + PV ++
Sbjct: 85 GYVMVKMNVTSKSWYIIRNTQGVTGFVGPDGDPVPLTKAEVRKF----GVKEKEPVLNIK 140
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ V + GPF F + +D EK + V +FGR T ++L Y+ +E
Sbjct: 141 VKPGDDVNIIAGPFKDFVAKIDEIDNEKGIIKAYVDMFGRDTLIDLEYSDIE 192
>gi|91200655|emb|CAJ73705.1| strongly similar to transcription antitermination protein NusG
[Candidatus Kuenenia stuttgartiensis]
Length = 182
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 112/182 (61%), Gaps = 6/182 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W++++V SN E K +++ R+ G++ L+T + +PSE++ V+ G+K S+R+
Sbjct: 1 MPKEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKI 60
Query: 61 FPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
+PGY++++ + + +V+ TI++T F+G P P+T E+E +++ ++
Sbjct: 61 YPGYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQSKPVPMTKYEVEKLLSDLDQKE 120
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+RP + + F GE+V + +GPF +++GIV+ V RV V + +FGR TPVEL Y QVE
Sbjct: 121 ERPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180
Query: 175 KI 176
I
Sbjct: 181 SI 182
>gi|325921468|ref|ZP_08183323.1| transcription antitermination protein nusG [Xanthomonas gardneri
ATCC 19865]
gi|325548015|gb|EGD19014.1| transcription antitermination protein nusG [Xanthomonas gardneri
ATCC 19865]
Length = 165
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 107/163 (65%), Gaps = 10/163 (6%)
Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV---------MTD 73
R+ R+ ++ ++ +P+E V+ +R G+K SER+FFPGYVL++ + +
Sbjct: 2 RDRIVRAEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEAGIPRIDN 61
Query: 74 KVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
+ +H +K+T KV+GF+G T + P P+ D E + I+ +V+ V++P V FE G+ V V+
Sbjct: 62 ESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVT 121
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 122 DGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 164
>gi|22297838|ref|NP_681085.1| transcription antitermination protein NusG [Thermosynechococcus
elongatus BP-1]
gi|22294015|dbj|BAC07847.1| transcription antitermination protein [Thermosynechococcus
elongatus BP-1]
Length = 227
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY VQV S CEKK +I RL + + I IP V+ ++K G + E + FPG
Sbjct: 34 WYAVQVASGCEKKVKSTIEQRLHTLDVADRIFRIEIPQTPVIKIKKDGSRQTIEEKVFPG 93
Query: 64 YVLIKA-----------VMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDS 101
YVL++ + D+ + IK+TP VI F+G + P P++ +
Sbjct: 94 YVLVQVRAQQSPETGEWQIDDEAWQVIKNTPNVINFVGAEQRRSTGRGRGHVKPMPLSPA 153
Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
E+E I + + Q PV + G+++ V +GPF F G V V E+S++ + IFG
Sbjct: 154 EVERIFRKAQE--QEPVHRIDLNSGDKIKVLNGPFKDFEGEVIEVSAERSKLKALLSIFG 211
Query: 162 RVTPVELAYNQVEKI 176
R TPVEL QVEK+
Sbjct: 212 RETPVELEVTQVEKV 226
>gi|150025253|ref|YP_001296079.1| transcription antitermination protein NusG [Flavobacterium
psychrophilum JIP02/86]
gi|149771794|emb|CAL43268.1| Transcription antitermination protein NusG [Flavobacterium
psychrophilum JIP02/86]
Length = 183
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V+ S E K I ++R L V+++ +P+E+VV+V+ G+K+ ++ +F
Sbjct: 7 KKWYVVRAVSGQENKVKAYIEAEINRLELSDYVSQVLVPTEKVVTVKDGKKIIKDKVYFS 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
GYV+++A + ++ H IK VIGFLG +P P+ +E+ ++ +V+ AV
Sbjct: 67 GYVMVEANLAGEITHIIKSITSVIGFLGETKNGDPVPLRIAEVNRMLGKVDELAVTADHG 126
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S+ F VGE V V+DGPF FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 127 SIPFTVGETVKVTDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183
>gi|313887246|ref|ZP_07820940.1| transcription termination/antitermination factor NusG
[Porphyromonas asaccharolytica PR426713P-I]
gi|312923299|gb|EFR34114.1| transcription termination/antitermination factor NusG
[Porphyromonas asaccharolytica PR426713P-I]
gi|332177000|gb|AEE12690.1| NusG antitermination factor [Porphyromonas asaccharolytica DSM
20707]
Length = 180
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 6/179 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
R+Y+++V S EKK E I S L V + +P+E+VVS R G+KV ER + P
Sbjct: 1 MRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEAAVQRP 117
GYVL++A + HT+ P VIGFL + +P P+ E++ ++ Q + +
Sbjct: 61 GYVLVEAALVGDTEHTLCTIPNVIGFLNSRMSDGQLSPEPLRTQEVQDLLGQADRDAEGA 120
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V + DGPF+ F+ + V +K ++ V V IFGR TP+EL Y QVEK
Sbjct: 121 GRFDVEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179
>gi|257126639|ref|YP_003164753.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b]
gi|257050578|gb|ACV39762.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b]
Length = 207
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI+ YS EKK + R+ L V I +P E V+ ++G++V R+ F
Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74
Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
P YV+I+ + ++ I++T V GF+G G +P P++D E +++
Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLA 134
Query: 109 QVE---AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
++ P + F+VGE V V G F G + +D E +V V + + GR+TP
Sbjct: 135 KIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLTP 194
Query: 166 VELAYNQVEKI 176
VE+ + ++ KI
Sbjct: 195 VEVEHTEIAKI 205
>gi|146319637|ref|YP_001199349.1| transcription antitermination protein NusG [Streptococcus suis
05ZYH33]
gi|145690443|gb|ABP90949.1| Transcription antiterminator [Streptococcus suis 05ZYH33]
Length = 179
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMWENILRVEIPNQTVQVEKNGEVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + + +TP V GF+ G P+P+ + EI I+ + VQ
Sbjct: 67 GYVLVEMVMTDEAWFVVCNTPNVTGFVGSHGNRSKPNPLLEEEIRQILVFMGQTVQEF-- 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +VG+ VC+ DG F + G + +D ++V + + +FG T E+ +Q+ ++
Sbjct: 125 DIDVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQIAEL 179
>gi|256420746|ref|YP_003121399.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256035654|gb|ACU59198.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 196
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+++V S EKK E + + RS +++T+I +P E+V V+ G+KV E+ F+PG
Sbjct: 20 KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79
Query: 64 YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119
YV+I+A+ MTD+V +I++ VI FLG + P + +E+ ++ +V+
Sbjct: 80 YVMIEAIDGKMTDEVIQSIRNVSGVIHFLG-KDKPIALRKAEVNKMLGKVDEMSDNGLTM 138
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S F VGE + + DGPF FNGI++ V E+K ++ V V IFGR TPVEL + QVEKI
Sbjct: 139 SEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEKI 195
>gi|160947356|ref|ZP_02094523.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270]
gi|158446490|gb|EDP23485.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270]
Length = 179
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V YS E K +I + G D + E+ +P+ + G+ ER+ F
Sbjct: 13 EAKWYVVHTYSGHENKVKANIEKLVVNRGNDIDIFEVVVPTVKE-ETETGK--IKERQLF 69
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYVL+K ++TD ++ +++T V GF+G+G P P+++ E+E + +P +V
Sbjct: 70 PGYVLVKMIITDISWYLVRNTRGVTGFVGSGNKPVPLSEKEVEAL-----GVSAKPYDNV 124
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + + DG F V V +E ++ V +FGR T EL ++ V K
Sbjct: 125 DIHEGDSITIIDGAFKDLTAKVIEVSQENGKLKAFVSLFGRDTLAELDFSDVIK 178
>gi|261415675|ref|YP_003249358.1| NusG antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372131|gb|ACX74876.1| NusG antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326618|gb|ADL25819.1| transcription termination/antitermination factor NusG [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 179
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 5/177 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY V ++ E + + + R G+ I +P+ VVS +G++ S +
Sbjct: 1 MSMQWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRP 117
FP Y++I+ + + H + V F G P P+ SE++ ++
Sbjct: 61 FPAYIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEG 120
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + +GE VC+ +GPF F G+V + E +++ V V +FGR TPVELA+NQVE
Sbjct: 121 EIQIPYTIGENVCIKEGPFKGFVGVVDEIME--AKIKVMVSVFGRSTPVELAFNQVE 175
>gi|282879912|ref|ZP_06288637.1| transcription termination/antitermination factor NusG [Prevotella
timonensis CRIS 5C-B1]
gi|281306214|gb|EFA98249.1| transcription termination/antitermination factor NusG [Prevotella
timonensis CRIS 5C-B1]
Length = 181
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY+++ + E K E I + + L V++I IP E+ ++R G++V E+ PG
Sbjct: 8 WYVLRAVNGKEAKLKEYIEAEMKHNTLLQQHVSQILIPMEKHAALRNGKRVEKEKISLPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ ++A + V HT++ P +GFLG +NPSPV SEI ++ VE V +
Sbjct: 68 YIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGDVEETEITNDVEVPY 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QV+K
Sbjct: 128 EVDEVVTVTDGPFSGFSGVIEEVNVEKHKLKVMVKIFGRKTPLELSFMQVQK 179
>gi|83815555|ref|YP_445881.1| transcription termination/antitermination factor NusG [Salinibacter
ruber DSM 13855]
gi|294507791|ref|YP_003571849.1| transcription antitermination protein NusG [Salinibacter ruber M8]
gi|83756949|gb|ABC45062.1| transcription termination/antitermination factor NusG [Salinibacter
ruber DSM 13855]
gi|294344119|emb|CBH24897.1| transcription antitermination protein NusG [Salinibacter ruber M8]
Length = 185
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 74/173 (42%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ +SN EKK + + R GL+ V EI IP+E V ++ G K E+ FFPGY
Sbjct: 10 WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
+L+ +T + +D P VIGFL GTG+ P+ + + EI+ I+ +++ A + +
Sbjct: 70 ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQPEM 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F+VG+ V V DGPF SFNGIV++V ++ +V V V IFGR TPVEL Y QVE
Sbjct: 130 PFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182
>gi|15639228|ref|NP_218676.1| transcription antitermination protein (nusG) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025469|ref|YP_001933241.1| transcription antitermination protein [Treponema pallidum subsp.
pallidum SS14]
gi|6093601|sp|O83264|NUSG_TREPA RecName: Full=Transcription antitermination protein nusG
gi|3322506|gb|AAC65224.1| transcription antitermination protein (nusG) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018044|gb|ACD70662.1| transcription antitermination protein [Treponema pallidum subsp.
pallidum SS14]
gi|291059639|gb|ADD72374.1| transcription termination/antitermination factor NusG [Treponema
pallidum subsp. pallidum str. Chicago]
Length = 185
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ +S E + ++ + + + +++ +I IP E + V+ G+K R+
Sbjct: 1 MAKEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRK 60
Query: 60 FFPGYVLIKAVMTDKVYHTI----KDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA- 112
FFPGY+L++ + + + + + P V GFLG+ P V+ E I+ +
Sbjct: 61 FFPGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEI 120
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ P + F VG++V + +GPFA+F+G V+ V E+++V V V IFGR TPVEL
Sbjct: 121 KGDRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELV 180
Query: 172 QVEKI 176
QVE +
Sbjct: 181 QVEAL 185
>gi|228470334|ref|ZP_04055238.1| transcription termination/antitermination factor NusG
[Porphyromonas uenonis 60-3]
gi|228308077|gb|EEK16952.1| transcription termination/antitermination factor NusG
[Porphyromonas uenonis 60-3]
Length = 180
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 6/179 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
R+Y+++V S EKK E I S L V + +P+E+VVS R G+KV ER + P
Sbjct: 1 MRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP 117
GYVL++A + HT+ P VIGFL + + P P+ E++ ++ Q + +
Sbjct: 61 GYVLVEAALVGDTEHTLCTIPNVIGFLTSRMSDGQLAPEPLRTQEVQDLLGQADRDAEGA 120
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V + DGPF+ F+ + V +K ++ V V IFGR TP+EL Y QVEK
Sbjct: 121 GRFDIEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179
>gi|237802743|ref|YP_002887937.1| transcription antitermination protein NusG [Chlamydia trachomatis
B/Jali20/OT]
gi|231273977|emb|CAX10769.1| transcription antitermination protein [Chlamydia trachomatis
B/Jali20/OT]
Length = 182
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA-PVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G++ V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVLSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|254302296|ref|ZP_04969654.1| transcription antitermination protein NusG [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148322488|gb|EDK87738.1| transcription antitermination protein NusG [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 193
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N
Sbjct: 67 AYVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|19705332|ref|NP_602827.1| transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296329159|ref|ZP_06871661.1| transcription termination/antitermination factor NusG
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
gi|19713309|gb|AAL94126.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296153733|gb|EFG94549.1| transcription termination/antitermination factor NusG
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
Length = 193
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N
Sbjct: 67 AYVMLEMEATREENENGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGVKTPKENVKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|34762878|ref|ZP_00143861.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887442|gb|EAA24529.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 193
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKIYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N
Sbjct: 67 AYVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|237740928|ref|ZP_04571409.1| transcription antitermination protein nusG [Fusobacterium sp.
4_1_13]
gi|256846757|ref|ZP_05552213.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_36A2]
gi|294784292|ref|ZP_06749586.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_27]
gi|229430972|gb|EEO41184.1| transcription antitermination protein nusG [Fusobacterium sp.
4_1_13]
gi|256717977|gb|EEU31534.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_36A2]
gi|294488048|gb|EFG35400.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_27]
Length = 193
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N
Sbjct: 67 AYVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|330444705|ref|YP_004377691.1| transcription termination/antitermination factor NusG
[Chlamydophila pecorum E58]
gi|328807815|gb|AEB41988.1| transcription termination/antitermination factor NusG
[Chlamydophila pecorum E58]
Length = 182
Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMAEFIQEIILPSENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD + +K T V+ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLVKMHLTDDSWLYVKSTAGVVEFLG-GAKPVALSEDEVRDILTDMEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|237743080|ref|ZP_04573561.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1]
gi|260495681|ref|ZP_05815804.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_33]
gi|229433376|gb|EEO43588.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1]
gi|260196746|gb|EEW94270.1| transcription termination/antitermination factor NusG
[Fusobacterium sp. 3_1_33]
Length = 193
Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N
Sbjct: 67 AYVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + V F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGVKTPKETIKVDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|157412563|ref|YP_001483429.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9215]
gi|254525769|ref|ZP_05137821.1| transcription termination/antitermination factor NusG
[Prochlorococcus marinus str. MIT 9202]
gi|157387138|gb|ABV49843.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9215]
gi|221537193|gb|EEE39646.1| transcription termination/antitermination factor NusG
[Prochlorococcus marinus str. MIT 9202]
Length = 203
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY +QV S+CEKK ++ R G+++ + EI IP + ++K G + +E + F
Sbjct: 19 ARWYAIQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 79 PGYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR- 137
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 138 -ASEKKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 196
Query: 171 NQVEK 175
+Q+ K
Sbjct: 197 SQISK 201
>gi|295425597|ref|ZP_06818284.1| transcription termination/antitermination factor NusG
[Lactobacillus amylolyticus DSM 11664]
gi|295064613|gb|EFG55534.1| transcription termination/antitermination factor NusG
[Lactobacillus amylolyticus DSM 11664]
Length = 162
Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K + R G+ + + +P + V +G+K E + FP
Sbjct: 7 KQWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEKEKVETVRGKKQEVEEKIFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYVL++ VMTD+ + +++TP V GF+G+ G PSP+ E+E ++NQ + ++
Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLNQ-QGQPEKKKP 125
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
+V FE+GE V +++G F G + ++ +
Sbjct: 126 TVNFELGEHVTITEGAFNGIVGKITDIQPDN 156
>gi|289566015|ref|ZP_06446453.1| transcription termination/antitermination factor NusG [Enterococcus
faecium D344SRF]
gi|289162213|gb|EFD10075.1| transcription termination/antitermination factor NusG [Enterococcus
faecium D344SRF]
Length = 156
Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ YS E K +I R + + + +P E+ V+ G++ + F
Sbjct: 5 EKNWYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTF 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++
Sbjct: 65 PGYVLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQND 124
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
V EVGE V + +G FA G V VD EK
Sbjct: 125 LEV--EVGEVVKIIEGAFAGLEGQVTEVDGEK 154
>gi|256028511|ref|ZP_05442345.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
gi|289766431|ref|ZP_06525809.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
gi|289717986|gb|EFD81998.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
Length = 193
Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP
Sbjct: 7 RKWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFP 66
Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N
Sbjct: 67 AYVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNI 126
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + V F G+ V + G F G V +D E RV V V IFGR+TPVE+
Sbjct: 127 IGVKTPKETIQVDFTEGDYVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIE 186
Query: 170 YNQVEKI 176
+ V K+
Sbjct: 187 VDGVLKV 193
>gi|78778593|ref|YP_396705.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9312]
gi|78712092|gb|ABB49269.1| transcription antitermination protein nusG [Prochlorococcus marinus
str. MIT 9312]
Length = 203
Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + F
Sbjct: 19 ARWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 79 PGYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR- 137
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 138 -ASEKKAVIKLDIEEKDRILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 196
Query: 171 NQVEK 175
+Q+ K
Sbjct: 197 SQINK 201
>gi|123965469|ref|YP_001010550.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9515]
gi|123199835|gb|ABM71443.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9515]
Length = 203
Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + F
Sbjct: 19 ARWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 79 PGYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR- 137
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 138 -ASEKKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 196
Query: 171 NQVEK 175
+Q+ K
Sbjct: 197 SQINK 201
>gi|307718195|ref|YP_003873727.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM
6192]
gi|306531920|gb|ADN01454.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM
6192]
Length = 184
Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ Y+ E + +++ + + ++ +P E VV V+ G++ + R+F
Sbjct: 1 MARGWYVLHTYTGYENRVEKTLRKLMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA-- 112
PGYVL++ + D + I+ V GF+GT P P++ E+ I+ +
Sbjct: 61 LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q
Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180
Query: 173 VEKI 176
VEKI
Sbjct: 181 VEKI 184
>gi|42527927|ref|NP_973025.1| transcription antitermination protein NusG [Treponema denticola
ATCC 35405]
gi|41818972|gb|AAS12944.1| transcription antitermination protein NusG [Treponema denticola
ATCC 35405]
gi|325474848|gb|EGC78034.1| transcription antitermination protein NusG [Treponema denticola
F0402]
Length = 185
Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 9/185 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ YS E K +I + + + VT+I IP E V+ + G+K N +R+
Sbjct: 1 MAKAWYILHTYSGYENKIERTIRTLIEKGIISADFVTDIKIPEELVIENKGGKKRNVKRK 60
Query: 60 FFPGYVLIKAVMTDKVY----HTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA- 112
F PGY+L++ + D + I+ V GFLGT P P++ E + I+ +
Sbjct: 61 FLPGYMLVEMNLPDLGWKSVCSEIRKIQGVTGFLGTAGNEKPQPISPDEAKEILQKTGEI 120
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ F G+ V + +G FASF G++ V +K+++ V V IFGR TPVE+ +
Sbjct: 121 KGDKNIRVIQNFSEGQHVKIIEGAFASFTGVIDEVMADKNKLRVMVAIFGRTTPVEVEMS 180
Query: 172 QVEKI 176
Q E I
Sbjct: 181 QAEII 185
>gi|325972673|ref|YP_004248864.1| NusG antitermination factor [Spirochaeta sp. Buddy]
gi|324027911|gb|ADY14670.1| NusG antitermination factor [Spirochaeta sp. Buddy]
Length = 186
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 9/186 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M WY+V YS E+K I + + T++ +P E VV V+ G + + +R+
Sbjct: 1 MAKGWYVVHTYSGYEQKIERIINKMRETDTDFALVCTDVKVPFETVVEVKDGVRRDVKRK 60
Query: 60 FFPGYVLIKAVMTDKVY----HTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA- 112
PGY+L++ + D + +K V GF+ + P P+ +E++ + +
Sbjct: 61 ILPGYILVELDLPDHSWKTWCSQVKRIQGVTGFVTPNDSVKPQPLNAAEVKSLFQKTGDL 120
Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A + F +GE+V + +GPF SF G+++ V+ EK+R+ V V IFGR TPVE+ +
Sbjct: 121 PAEKVFKPKQSFSIGEQVRIIEGPFDSFTGVIEEVNLEKARMRVSVGIFGRSTPVEVDFL 180
Query: 172 QVEKIV 177
QVEKI+
Sbjct: 181 QVEKIL 186
>gi|33860765|ref|NP_892326.1| transcription antitermination protein NusG [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633707|emb|CAE18664.1| transcription antitermination protein, NusG [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 203
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + F
Sbjct: 19 ARWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 79 PGYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR- 137
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 138 -ASEKKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 196
Query: 171 NQVEK 175
+Q+ K
Sbjct: 197 SQINK 201
>gi|315186342|gb|EFU20103.1| transcription antitermination protein nusG [Spirochaeta thermophila
DSM 6578]
Length = 184
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ Y+ E + +++ + + ++ +P E VV V+ G++ + R+F
Sbjct: 1 MARGWYVLHTYTGYENRVEKTLRKFMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEA-- 112
PGYVL++ + D + I+ V GF+GT P P++ E+ I+ +
Sbjct: 61 LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q
Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180
Query: 173 VEKI 176
VEKI
Sbjct: 181 VEKI 184
>gi|123967760|ref|YP_001008618.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. AS9601]
gi|123197870|gb|ABM69511.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. AS9601]
Length = 203
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + F
Sbjct: 19 ARWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 79 PGYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR- 137
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 138 -ASEKKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 196
Query: 171 NQVEK 175
+Q+ K
Sbjct: 197 SQINK 201
>gi|126695563|ref|YP_001090449.1| transcription antitermination protein NusG [Prochlorococcus marinus
str. MIT 9301]
gi|126542606|gb|ABO16848.1| transcription antitermination protein, NusG [Prochlorococcus
marinus str. MIT 9301]
Length = 203
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
RWY VQV S+CEKK ++ R G+++ + EI IP + ++K G + +E + F
Sbjct: 19 ARWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVF 78
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
PGYVL++ ++ + +K TP VI F+G + P P++ E+ I +
Sbjct: 79 PGYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKR- 137
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
A+ ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL +
Sbjct: 138 -ASEKKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEF 196
Query: 171 NQVEK 175
+Q+ K
Sbjct: 197 SQINK 201
>gi|260890608|ref|ZP_05901871.1| transcription termination/antitermination factor NusG [Leptotrichia
hofstadii F0254]
gi|260859653|gb|EEX74153.1| transcription termination/antitermination factor NusG [Leptotrichia
hofstadii F0254]
Length = 207
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI+ YS EKK + R+ L V I +P E V+ ++G+ V R+ F
Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLF 74
Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
P YV+I+ + ++ I++T V GF+G G +P P++D E ++
Sbjct: 75 PSYVMIEMRSVREENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASDLLA 134
Query: 109 QVEA---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+V P + F+VGE V + G F G + +D E +V V + + GR+TP
Sbjct: 135 KVGMDVDGENAPRIGIDFKVGEVVAIRGGSFDGQQGEISEIDYEHGKVKVMLEVLGRLTP 194
Query: 166 VELAYNQVEKI 176
VE+ + ++ KI
Sbjct: 195 VEVEHTEIAKI 205
>gi|39938741|ref|NP_950507.1| transcription antiterminator [Onion yellows phytoplasma OY-M]
gi|39721850|dbj|BAD04340.1| transcription antiterminator [Onion yellows phytoplasma OY-M]
Length = 204
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 105/177 (59%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P
Sbjct: 30 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD+ + +++TP++ GFLG+ G P P++++EI ++ ++ +
Sbjct: 90 GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 149
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +G++V + G F+ G V ++D+++ ++ VEV +FGR TPVE+++N ++I
Sbjct: 150 NF---IGKKVEIISGSFSGQIGQVSSIDDDREKMTVEVDLFGRATPVEISFNDFKEI 203
>gi|326799806|ref|YP_004317625.1| NusG antitermination factor [Sphingobacterium sp. 21]
gi|326550570|gb|ADZ78955.1| NusG antitermination factor [Sphingobacterium sp. 21]
Length = 181
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+V+ S EKK + I ++R G++HLV ++ IP E+ +R+G+K+ ER ++PG
Sbjct: 7 KWYVVRAVSGKEKKVKQYIEAEINRLGINHLVPQVLIPMEKYFQMREGKKIAKERNYYPG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV-EAAVQRPVSSV 121
YVL++A + ++ H IK+ VIGFLG N P+ +E+ I+ V E + Q + +V
Sbjct: 67 YVLLEAALDGELEHVIKNINSVIGFLGDKAGNAIPLRQAEVNRILGTVDEMSEQGEMMNV 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ VGE V V+DGPF F+G ++ V+EEK ++ V V +FGR TP+EL Y QVEK
Sbjct: 127 PYYVGESVKVTDGPFNGFSGEIEEVNEEKKKLKVMVKVFGRKTPLELNYMQVEK 180
>gi|15835611|ref|NP_300135.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae J138]
gi|16752968|ref|NP_445241.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae AR39]
gi|18203670|sp|Q9Z9A5|NUSG_CHLPN RecName: Full=Transcription antitermination protein nusG
gi|7189614|gb|AAF38507.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae AR39]
gi|8978449|dbj|BAA98286.1| transcriptional antitermination [Chlamydophila pneumoniae J138]
Length = 182
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T ++ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLVKMHLTDESWLYVKSTAGIVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGTVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|40786356|dbj|BAD07006.1| transcription anti-termination factor [Onion yellows phytoplasma]
Length = 204
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 105/177 (59%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P
Sbjct: 30 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD+ + +K+TP++ GFLG+ G P P++++EI ++ ++ +
Sbjct: 90 GYVFIQMMITDRSWFVVKNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 149
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +G++V + G F+ G V ++D+++ ++ VEV +FGR TPVE+++N ++I
Sbjct: 150 NF---IGKKVEIISGSFSGQIGQVSSIDDDREKMKVEVDLFGRATPVEISFNDFKEI 203
>gi|325926955|ref|ZP_08188233.1| transcription antitermination protein nusG [Xanthomonas perforans
91-118]
gi|325542667|gb|EGD14131.1| transcription antitermination protein nusG [Xanthomonas perforans
91-118]
Length = 156
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 10/155 (6%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV---------MTDKVYHTIKD 81
++ ++ +P+E V+ +R G+K SER+FFPGYVL++ + ++ +H +K+
Sbjct: 1 MEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEGGIPRIDNESWHLVKE 60
Query: 82 TPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFN 140
T KV+GF+G T + P P+ D E + I+ +V+ V++P V FE G+ V V++GPF FN
Sbjct: 61 TSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTEGPFNDFN 120
Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 GVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 155
>gi|269302953|gb|ACZ33053.1| transcription termination/antitermination factor NusG
[Chlamydophila pneumoniae LPCoLN]
Length = 182
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K T V+ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKSTAGVVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|215425876|ref|ZP_03423795.1| transcription antitermination protein NusG [Mycobacterium
tuberculosis T92]
gi|289749142|ref|ZP_06508520.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T92]
gi|289689729|gb|EFD57158.1| transcription antitermination protein nusG [Mycobacterium
tuberculosis T92]
Length = 205
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY
Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
+L++ +TD + +++TP V GF+G PS + ++ +
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168
Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
++RPV V +EVGE V V DGPFA+ +
Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATI 205
>gi|313896787|ref|ZP_07830335.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 137 str. F0430]
gi|320530078|ref|ZP_08031148.1| transcription termination/antitermination factor NusG [Selenomonas
artemidis F0399]
gi|312974704|gb|EFR40171.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 137 str. F0430]
gi|320137511|gb|EFW29423.1| transcription termination/antitermination factor NusG [Selenomonas
artemidis F0399]
Length = 183
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSDMLFNVVVPVEDELEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + + V
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGGAPKRRAKV--A 135
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + G F + G V ++D +RV V++ TP+++ +QVE I
Sbjct: 136 VGDNVRIVSGAFEDYAGKVISIDSAGARVQVDIE----GTPIDIEIDQVELI 183
>gi|304437205|ref|ZP_07397166.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 149 str. 67H29BP]
gi|304369867|gb|EFM23531.1| transcription termination/antitermination factor NusG [Selenomonas
sp. oral taxon 149 str. 67H29BP]
Length = 183
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + + V
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGGAPKRRAKVD-- 135
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V + G F + G + ++D RV V+V T +++ +QVE+I
Sbjct: 136 VGDTVRIISGAFEDYAGKITSIDTSSMRVQVDVD----GTQLDVEIDQVERI 183
>gi|194476830|ref|YP_002049009.1| transcription antitermination protein NusG [Paulinella
chromatophora]
gi|171191837|gb|ACB42799.1| transcription antitermination protein NusG [Paulinella
chromatophora]
Length = 228
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
WY VQV S+CEKK ++ R G+ + + EI IP + ++K G + + E + FPG
Sbjct: 46 WYAVQVASSCEKKVKTTLEKRAMTLGVSNRILEIAIPEIPTLKIKKDGSRQSIEEKVFPG 105
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVEA 112
YVLI+ ++ + I+ TP VI F+G P P++ E++ I + A
Sbjct: 106 YVLIRMILDEDTMMAIRSTPHVINFVGNEAKRVNRRIRGHIDPKPLSRQEVDRIFKR--A 163
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
++ + + G+R+ V GPF F G V V E+S++ + IFGR TPVEL + Q
Sbjct: 164 TQKKNLVKSDLDEGDRIVVIAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFAQ 223
Query: 173 VEK 175
+ K
Sbjct: 224 ISK 226
>gi|327399535|ref|YP_004340404.1| NusG antitermination factor [Hippea maritima DSM 10411]
gi|327182164|gb|AEA34345.1| NusG antitermination factor [Hippea maritima DSM 10411]
Length = 179
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 1/174 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62
+WY + E K + +L GL+ V EI +P E V+ ++K K ++ +P
Sbjct: 5 KWYAIHTQVGYEDKVKVMLQNKLKEEGLEGEVEEIFVPFEEVIEIKKNNKKEKVKKCLYP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV +KA M+DK+Y+ +K V GF+G P P+ + EI IM +VE++ + P SV
Sbjct: 65 SYVFVKARMSDKLYNLVKRMSFVSGFVGYKNEPLPMDEKEIRDIMQRVESSKEAPRLSVS 124
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE GE+V V DGPFA+F G + VD +K R+ + + IFGR TPVEL YNQVEK+
Sbjct: 125 FEPGEQVRVLDGPFANFTGTIDEVDVDKGRLRILISIFGRSTPVELNYNQVEKV 178
>gi|29840454|ref|NP_829560.1| transcription antitermination protein NusG [Chlamydophila caviae
GPIC]
gi|29834803|gb|AAP05438.1| transcription antitermination protein NusG [Chlamydophila caviae
GPIC]
Length = 182
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
+VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|292670290|ref|ZP_06603716.1| transcription antitermination factor NusG [Selenomonas noxia ATCC
43541]
gi|292648021|gb|EFF65993.1| transcription antitermination factor NusG [Selenomonas noxia ATCC
43541]
Length = 183
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + + V
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGGAPKRRTKVS-- 135
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ G F + G + ++D RV V+V TP+++ +QVE I
Sbjct: 136 VGDTVRIASGAFEDYAGKITSIDSSGLRVQVDVE----GTPLDVEIDQVELI 183
>gi|15618000|ref|NP_224284.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae CWL029]
gi|33241411|ref|NP_876352.1| transcription antitermination protein NusG [Chlamydophila
pneumoniae TW-183]
gi|4376333|gb|AAD18229.1| Transcriptional Antitermination [Chlamydophila pneumoniae CWL029]
gi|33235919|gb|AAP98009.1| transcription antitermination factor [Chlamydophila pneumoniae
TW-183]
Length = 182
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T ++ FLG G P +++ E+ I+ +E V F
Sbjct: 63 YLLVKMHLTDESWLYVKSTAGIVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|329943041|ref|ZP_08291815.1| transcription termination/antitermination factor NusG
[Chlamydophila psittaci Cal10]
gi|313848197|emb|CBY17198.1| putative transcription antitermination protein [Chlamydophila
psittaci RD1]
gi|325506733|gb|ADZ18371.1| transcription antitermination factor [Chlamydophila psittaci 6BC]
gi|328814588|gb|EGF84578.1| transcription termination/antitermination factor NusG
[Chlamydophila psittaci Cal10]
gi|328914875|gb|AEB55708.1| transcription termination/antitermination factor NusG
[Chlamydophila psittaci 6BC]
Length = 182
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
+VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|62185279|ref|YP_220064.1| transcription antitermination protein NusG [Chlamydophila abortus
S26/3]
gi|62148346|emb|CAH64113.1| putative transcription antitermination protein [Chlamydophila
abortus S26/3]
Length = 182
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +++ G SG+ + EI +P E V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKALEGFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
+VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|289433600|ref|YP_003463472.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289169844|emb|CBH26382.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 149
Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 5/151 (3%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G+ + + +P E ++ G+ +R+ FPGYVL++ VMTD ++ +++TP V GF
Sbjct: 1 MGMSDKIFRVIVPEEEETEIKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGF 60
Query: 89 L---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
+ G+G P+P+ E + I+ + + + FE+GE V V +GPFA F+G V
Sbjct: 61 VGSSGSGSKPTPLLPEEADRILKSMGMVEK--RAEADFEIGETVMVKEGPFADFSGKVDE 118
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 119 MDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 149
>gi|289422487|ref|ZP_06424330.1| transcription termination/antitermination factor NusG
[Peptostreptococcus anaerobius 653-L]
gi|289157059|gb|EFD05681.1| transcription termination/antitermination factor NusG
[Peptostreptococcus anaerobius 653-L]
Length = 180
Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFP 62
+WY+V YS E K +I + G++ ++ ++ +P+E VV+ K G++ ++R+ FP
Sbjct: 8 KWYVVHTYSGHENKVKTTIENTVKNRGMEDIIEQVIVPTEEVVTTTKTGKEKLTQRKVFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV++K MTD+ ++ +++T V GF+G G P P+T E++ + ++ A+ + +
Sbjct: 68 SYVIVKMEMTDESWYIVRNTKGVTGFVGPGSKPVPLTVDEVKAMGIELPAS-KIISGEID 126
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V G F G V +V+ EK V V V FGR V L +EK+
Sbjct: 127 LAPGDTVKVISGAFVDNVGEVDDVNIEKREVKVYVNAFGRKALVTLGLENIEKV 180
>gi|260885404|ref|ZP_05734982.2| transcription termination/antitermination factor NusG [Prevotella
tannerae ATCC 51259]
gi|260852286|gb|EEX72155.1| transcription termination/antitermination factor NusG [Prevotella
tannerae ATCC 51259]
Length = 180
Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 106/172 (61%), Gaps = 1/172 (0%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ S E K E I + + V+++ +P+E++V V G++ ER + PGY
Sbjct: 8 WYVLRAISGKENKVKEYIDAEIKLNAFQGNVSQVLVPTEKIVQVHNGKRTVKERNYLPGY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFF 123
VL++A + ++ H +++TP V+GFL +P+P+ +SE+ I+ + + +V F
Sbjct: 68 VLVEAKLVGEITHMLRNTPNVLGFLPDTNDPTPLRESEVNRILGKADEEPDVNEALTVPF 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+G+ V V++GPF+ F+G V+ +D+EK +V V V +FGR T ++L + QVEK
Sbjct: 128 VIGDSVKVTEGPFSGFSGTVEKIDDEKKKVTVTVKVFGRSTGLDLGFMQVEK 179
>gi|220909378|ref|YP_002484689.1| transcription antitermination protein NusG [Cyanothece sp. PCC
7425]
gi|219865989|gb|ACL46328.1| NusG antitermination factor [Cyanothece sp. PCC 7425]
Length = 217
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFF 61
WY VQV S CEKK +++ R + + +I IP + +RK G + SE + F
Sbjct: 22 KHWYAVQVASGCEKKVKQNLEQRRQTLDVADRILQIEIPQTPTIKLRKDGSRQTSEEKVF 81
Query: 62 PGYVLI-----------KAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVT 99
PGYVL+ K + D+ + I++TP VI F+G + P +
Sbjct: 82 PGYVLLLIREAWDDKRGKWRIDDEAWQVIRNTPNVINFVGAEQRKHTGRGRGHVEPVRLH 141
Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
SE+E I Q + Q PV + G+++ V +GPF F G V V E+S++ + I
Sbjct: 142 PSEVERIFRQTKE--QEPVHKIDLAAGDKIRVLNGPFKDFEGEVIEVSGERSKLKALLSI 199
Query: 160 FGRVTPVELAYNQVEK 175
FGR TPVEL NQV+K
Sbjct: 200 FGRETPVELEVNQVQK 215
>gi|330837666|ref|YP_004412307.1| transcription antitermination protein nusG [Spirochaeta coccoides
DSM 17374]
gi|329749569|gb|AEC02925.1| transcription antitermination protein nusG [Spirochaeta coccoides
DSM 17374]
Length = 189
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV---TEITIPSERVVSVRKGRKVNSE 57
M+ WY+V YS+ E+K + + +++ +P E V+ ++ G+K +
Sbjct: 1 MSKAWYVVNTYSSYEQKIERILRKMMETD--PDFFAVCSDVKVPMETVMDIKDGKKREVK 58
Query: 58 RRFFPGYVLIKAVMTDKVY----HTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVE 111
R+ PGY+L++ + + + IK V GF+ + P P++ E++ I +
Sbjct: 59 RKLLPGYILVELDLPENSWKTYCSQIKRIQGVTGFVTPNDSMKPQPLSAEEVKSIFQKTG 118
Query: 112 A--AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ F VGE V + +GPF SF G + ++ +K+ + V V IFGR TPVE+
Sbjct: 119 DMKTEKTFKPKQTFSVGEVVKIIEGPFESFTGTIDEINTQKNSLRVSVGIFGRSTPVEVG 178
Query: 170 YNQVEK 175
+ QVEK
Sbjct: 179 FLQVEK 184
>gi|89898122|ref|YP_515232.1| transcription antitermination protein NusG [Chlamydophila felis
Fe/C-56]
gi|89331494|dbj|BAE81087.1| transcription antitermination [Chlamydophila felis Fe/C-56]
Length = 182
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EK +++ SG+ + EI +P E V+ V++G E+ +PG
Sbjct: 3 KWYVVQVFTAQEKTVKKALEDFKESSGMTDFIQEIVLPIENVMEVKRGEHKIVEKFIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F
Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
++G RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DIGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|262038204|ref|ZP_06011598.1| transcription termination/antitermination factor NusG [Leptotrichia
goodfellowii F0264]
gi|261747785|gb|EEY35230.1| transcription termination/antitermination factor NusG [Leptotrichia
goodfellowii F0264]
Length = 205
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI+ YS EKK + R+ L V I +P E V+ ++G+ V R+ F
Sbjct: 16 EKKWYIIHTYSGYEKKVATDLEKRIESLNLTDRVFRILVPEEEVLEEKRGKMVKVPRKLF 75
Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
P YV+++ + + ++ I++T V GF+G G +P P++D E ++++
Sbjct: 76 PSYVMVEMLSVKEENDLGLGYRVDSEAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLS 135
Query: 109 Q--VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ + ++ E+GE+V V F G V +D E RV V + +FGR+TPV
Sbjct: 136 KIGINGFENENKFNIDVEIGEKVIVKKDSFLDQEGEVAEIDYEHGRVKVLLEVFGRLTPV 195
Query: 167 ELAYNQVEK 175
E YN+++K
Sbjct: 196 EFEYNEIQK 204
>gi|259502667|ref|ZP_05745569.1| transcription antitermination protein NusG [Lactobacillus antri DSM
16041]
gi|259169312|gb|EEW53807.1| transcription antitermination protein NusG [Lactobacillus antri DSM
16041]
Length = 150
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 5/151 (3%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G+ + + + E V V+ G+ FPGYVL++ VMTD+ ++ ++TP V GF
Sbjct: 1 MGMQDYIFRVVVAEETVREVKDGQAKEVTENTFPGYVLVEMVMTDQAWYIARNTPGVTGF 60
Query: 89 LGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
LG+ G P+P+ E+E IM ++ VS + + G+ V V GPFA G V
Sbjct: 61 LGSHGGGSKPTPLLPDEVERIMKRM--GADITVSDIDVKEGDTVKVIAGPFADLTGKVTE 118
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VD EK ++ V V +FGR T EL ++QV+ +
Sbjct: 119 VDHEKQKLKVNVEMFGRETSAELGFDQVDTV 149
>gi|85057746|ref|YP_456662.1| transcription antitermination protein nusG [Aster yellows
witches'-broom phytoplasma AYWB]
gi|84789851|gb|ABC65583.1| transcription antitermination protein nusG [Aster yellows
witches'-broom phytoplasma AYWB]
Length = 199
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P
Sbjct: 25 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 84
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD+ + +++TP++ GFLG+ G P P++++EI ++ ++ +
Sbjct: 85 GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 144
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G++V + G F G V ++D ++ ++ +EV +FGR TPVE+++N ++I
Sbjct: 145 KF---IGKKVEIISGSFVGQIGQVSSIDADREKMILEVDLFGRATPVEISFNDFKEI 198
>gi|126697627|ref|YP_001086524.1| transcription antitermination protein [Clostridium difficile 630]
gi|255099220|ref|ZP_05328197.1| transcription antitermination protein [Clostridium difficile
QCD-63q42]
gi|255305002|ref|ZP_05349174.1| transcription antitermination protein [Clostridium difficile ATCC
43255]
gi|255654149|ref|ZP_05399558.1| transcription antitermination protein [Clostridium difficile
QCD-23m63]
gi|296449812|ref|ZP_06891580.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP08]
gi|296877876|ref|ZP_06901897.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP07]
gi|115249064|emb|CAJ66875.1| transcription antitermination protein [Clostridium difficile]
gi|296261356|gb|EFH08183.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP08]
gi|296431130|gb|EFH16956.1| transcription termination/antitermination factor NusG [Clostridium
difficile NAP07]
Length = 180
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY+V YS E K +I + G++ + ++ +P+E VV + G++ +R+ +P
Sbjct: 9 WYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKVYPS 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K ++TD+ ++ +++T V GF+G G P P+++ E++ + + S + F
Sbjct: 69 YVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEVKAMGIDTTD-PKVVNSDIDF 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V VS GPF+ G ++ +D E V V + FG+ T + +EKI
Sbjct: 128 EIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180
>gi|254973718|ref|ZP_05270190.1| transcription antitermination protein [Clostridium difficile
QCD-66c26]
gi|255091108|ref|ZP_05320586.1| transcription antitermination protein [Clostridium difficile CIP
107932]
gi|255312762|ref|ZP_05354345.1| transcription antitermination protein [Clostridium difficile
QCD-76w55]
gi|255515522|ref|ZP_05383198.1| transcription antitermination protein [Clostridium difficile
QCD-97b34]
gi|255648616|ref|ZP_05395518.1| transcription antitermination protein [Clostridium difficile
QCD-37x79]
gi|260681833|ref|YP_003213118.1| transcription antitermination protein [Clostridium difficile CD196]
gi|260685431|ref|YP_003216564.1| transcription antitermination protein [Clostridium difficile
R20291]
gi|306518739|ref|ZP_07405086.1| transcription antitermination protein [Clostridium difficile
QCD-32g58]
gi|260207996|emb|CBA60162.1| transcription antitermination protein [Clostridium difficile CD196]
gi|260211447|emb|CBE01557.1| transcription antitermination protein [Clostridium difficile
R20291]
Length = 180
Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
WY+V YS E K +I + G++ + ++ +P+E VV + G++ +R+ +P
Sbjct: 9 WYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKVYPS 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL+K ++TD+ ++ +++T V GF+G G P P+++ E++ + + S V F
Sbjct: 69 YVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEVKAMGIDTTD-PKVVNSDVDF 127
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E+G+ V VS GPF+ G ++ +D E V V + FG+ T + +EKI
Sbjct: 128 EIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180
>gi|238927916|ref|ZP_04659676.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC
43531]
gi|238884249|gb|EEQ47887.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC
43531]
Length = 183
Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ YS E K ++ + + + ++ ++ +P E + V+ G++ R+ FPGY
Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKVFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ A + + V
Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGAEPKRRTKVN-- 135
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ G F + G + ++D V V+V G+ VE+ QVE I
Sbjct: 136 VGDTVRITSGAFEDYAGKITSIDMSSMGVKVDVD--GKSLDVEID--QVELI 183
>gi|167753046|ref|ZP_02425173.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216]
gi|167659360|gb|EDS03490.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216]
Length = 186
Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 109/181 (60%), Gaps = 7/181 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY+V+ E K E I + S L+ ++++ IP+E+V ++R G+KV+ E+ +
Sbjct: 5 AKQWYVVRTIGGKENKVKEYIESEIRHSHLEEYISQVLIPTEKVYTIRNGKKVSKEKVSY 64
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------PSPVTDSEIEHIMNQVEA-AV 114
PGYVLI+A ++ I++ P V+GFLG + +P+ E+ I+ +V+ +
Sbjct: 65 PGYVLIEAAFVGQIPIIIRNIPNVLGFLGDTKEDSRKMIATPLRPQEVSRILGRVDELSS 124
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + F VGE + V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVE
Sbjct: 125 MEEENEIPFFVGETIKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVE 184
Query: 175 K 175
K
Sbjct: 185 K 185
>gi|227529493|ref|ZP_03959542.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC
49540]
gi|227350578|gb|EEJ40869.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC
49540]
Length = 150
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 5/151 (3%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G+ + + +P + V V+ G+ + FPGYVL++ VMTD+ ++ ++TP V GF
Sbjct: 1 MGMQDYIFRVVVPEDEVRQVKDGQAKEVVEKTFPGYVLVEMVMTDQAWYIARNTPGVTGF 60
Query: 89 LGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
LG+ G P+P+ E++ IM ++ VQ + VG+ V V GPFA G V
Sbjct: 61 LGSHGGGSKPTPLLPEEVDRIMKRM--GVQTVQHDIDVSVGDSVKVIAGPFADLTGKVTE 118
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VD EK ++ V V +FGR T EL ++Q++ +
Sbjct: 119 VDHEKMKLKVNVEMFGRETSAELGFDQIDTV 149
>gi|187918260|ref|YP_001883823.1| transcription antitermination protein NusG [Borrelia hermsii DAH]
gi|119861108|gb|AAX16903.1| transcription antitermination protein NusG [Borrelia hermsii DAH]
Length = 184
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q +S EKK + I +S V ++ P ERV ++ G+K ER+
Sbjct: 1 MSRAWYVLQTFSQYEKKIEQEIKLLISEGIFGANVLDVKAPIERVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + ++ + + I P V+ F+GT + P P++D E++ +
Sbjct: 61 WPGYILIELDLPEQDWKSTVANIIKIPGVVNFVGTNKEQKPLPISDEEVKSVFMLAGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF GI+ ++D EK ++ V V IFGR TPVE+ +
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGIIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|302062645|ref|ZP_07254186.1| transcription antitermination protein NusG [Pseudomonas syringae
pv. tomato K40]
Length = 141
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 63/138 (45%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H
Sbjct: 1 MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60
Query: 79 IKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
+KDTP+V+GF+ GT + P+P+TD E E I+ +V +P FE GE V V+DGPFA
Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120
Query: 138 SFNGIVKNVDEEKSRVHV 155
FNG V+ V+ EKSR+ V
Sbjct: 121 DFNGTVEEVNYEKSRIQV 138
>gi|164686515|ref|ZP_02210543.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM
16795]
gi|164604384|gb|EDQ97849.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM
16795]
Length = 179
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
+WY+V YS E K +I + G++ + ++ +P+E V+ + G++ +R+
Sbjct: 6 EAKWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKVRQRKI 65
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+P YVLI+ ++TD+ ++ +++T V GF+G G P P+++ E++ + ++ ++
Sbjct: 66 YPSYVLIQMIITDESWYIVRNTKGVTGFVGPGSKPVPLSEEEVKSMGIDLDKIGEK---R 122
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF-GRVTPVELAYNQVEKI 176
EVGE V V DG F +G+VK +D + +V + V +EL +E I
Sbjct: 123 TEIEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSIETI 179
>gi|212550368|ref|YP_002308685.1| transcription antitermination protein NusG [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|212548606|dbj|BAG83274.1| transcription antitermination protein NusG [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 177
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M R+Y+++ + E K E + + S L + ++ +P+ERVV +G+ ER
Sbjct: 1 MERRFYVLRAVNGKESKVKECLESEIRKNSNLRDCILQVIVPTERVVRNIRGKNYRKERA 60
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
F PGYV+I+AV+ +V H IK V GFLG G P P+ E+ I+ QV+ R
Sbjct: 61 FLPGYVVIEAVLKSEVVHFIKSINFVSGFLG-GNRPVPLRPVEVSRILGQVDEMQNRTEE 119
Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + VGE V ++ GPF F G ++ V +K R+ V V IFGR +P+EL Y QVEK
Sbjct: 120 FDVNYNVGETVKITFGPFTGFYGEIEEVHPDKKRLKVMVKIFGRKSPLELGYLQVEK 176
>gi|227514010|ref|ZP_03944059.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC
14931]
gi|227087654|gb|EEI22966.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC
14931]
Length = 150
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G++ + ++ +P E V V+ G+ E + FPGYVL++ VMTD+ ++ ++TP V GF
Sbjct: 1 MGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTFPGYVLVEMVMTDQAWYVARNTPGVTGF 60
Query: 89 LGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
LG+ G P+P+ E++ I+ ++ + + VG+ V + G FA +G V
Sbjct: 61 LGSHGGGSKPTPLLPEEVDRILVRM--GQDVARTDINVAVGDNVKIIAGAFADLSGKVIE 118
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VD +K ++ VE+ +FGR+T EL +NQ++ +
Sbjct: 119 VDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 149
>gi|203284306|ref|YP_002222046.1| transcription antitermination factor [Borrelia duttonii Ly]
gi|203287842|ref|YP_002222857.1| transcription antitermination factor [Borrelia recurrentis A1]
gi|201083749|gb|ACH93340.1| transcription antitermination factor [Borrelia duttonii Ly]
gi|201085062|gb|ACH94636.1| transcription antitermination factor [Borrelia recurrentis A1]
Length = 184
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q +S EKK + I +S + V ++ P ERV +R G+K ER+
Sbjct: 1 MSRAWYVLQTFSQYEKKIEQEIKLLISEGVFGNNVLDVKAPIERVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ ++D+ + + I V+ F+GT + P P++D E++ +
Sbjct: 61 WPGYILIELDLSDQEWKSTVANIIKISGVVNFVGTTKEQKPLPISDEEVKSVFMLAGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D EK ++ V V IFGR TPVE+ +
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|219684566|ref|ZP_03539509.1| transcription termination/antitermination factor NusG [Borrelia
garinii PBr]
gi|219671928|gb|EED28982.1| transcription termination/antitermination factor NusG [Borrelia
garinii PBr]
Length = 184
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|298372192|ref|ZP_06982182.1| transcription termination/antitermination factor NusG
[Bacteroidetes oral taxon 274 str. F0058]
gi|298275096|gb|EFI16647.1| transcription termination/antitermination factor NusG
[Bacteroidetes oral taxon 274 str. F0058]
Length = 186
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ S EK+ E I L + G L V+++ IP+ERV VR G+KV ER F P
Sbjct: 7 KWYVLRAMSGKEKQVKEYIDIELEKGGELSKYVSQVVIPTERVYVVRNGKKVIKERTFLP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEAAVQRP 117
GYVLI+ +T ++ +++ P V+GFLG E P P+ E+ ++ V++ + P
Sbjct: 67 GYVLIEVALTREISGWLRNVPNVLGFLGVNESPGNYQPIPLRSQEVTRLLGTVDSLDENP 126
Query: 118 VSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + VGE V V GPF F G+V+ V EK R+ V V IFGR T +EL + QVEK
Sbjct: 127 EELLEPYLVGETVRVITGPFNGFTGVVEEVSNEKRRMKVNVKIFGRNTTLELGFMQVEK 185
>gi|219685431|ref|ZP_03540249.1| transcription termination/antitermination factor NusG [Borrelia
garinii Far04]
gi|219672987|gb|EED30008.1| transcription termination/antitermination factor NusG [Borrelia
garinii Far04]
Length = 184
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|57238898|ref|YP_180034.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Welgevonden]
gi|58578830|ref|YP_197042.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Welgevonden]
gi|57160977|emb|CAH57883.1| transcription antitermination protein NusG [Ehrlichia ruminantium
str. Welgevonden]
gi|58417456|emb|CAI26660.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Welgevonden]
Length = 179
Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E K ++I G+ E+ +P E V ++ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + ++ PKV+ FL P ++DSE+E + ++ +V +
Sbjct: 61 SPGYVFLHMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++G+ V ++DG F FNG V+ ++E+K V V+IFGR+T +E ++K+
Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|58616887|ref|YP_196086.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Gardel]
gi|58416499|emb|CAI27612.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium
str. Gardel]
Length = 179
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E K ++I G+ E+ +P E V ++ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV ++ + + + ++ PKV+ FL P ++DSE+E + ++ +V +
Sbjct: 61 SPGYVFLRMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F++G+ V ++DG F FNG V+ ++E+K V V+IFGR+T +E ++K+
Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|119953185|ref|YP_945394.1| transcription antitermination protein NusG [Borrelia turicatae
91E135]
gi|119861956|gb|AAX17724.1| transcription antitermination protein NusG [Borrelia turicatae
91E135]
Length = 184
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q +S E+K + I +S V ++ P ERV ++ G+K ERR
Sbjct: 1 MSRAWYVLQTFSQYERKVEQEIKLLISEGVFGSNVLDVKAPIERVEEIKNGKKRIRERRI 60
Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + ++ + + I P V+ F+GT + P P++D E++ +
Sbjct: 61 WPGYILIELDLPEQEWKSTVANIIKIPGVVNFVGTNKEQKPFPISDEEVKSVFMLAGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D EK ++ V V IFGR TPVE+ +
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EK+
Sbjct: 181 IEKV 184
>gi|309802977|ref|ZP_07697078.1| putative transcription termination/antitermination factor NusG
[Bifidobacterium dentium JCVIHMP022]
gi|308220444|gb|EFO76755.1| putative transcription termination/antitermination factor NusG
[Bifidobacterium dentium JCVIHMP022]
Length = 247
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 16 KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75
K+ ++ R++ GL+ + +I +P E V + K R PGYVLI+ + +
Sbjct: 74 KRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPGYVLIRMLPDENA 133
Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------EAAVQRPVSSVFF 123
+++T V GF+G + P+P++ E+ +M + AA ++ V +
Sbjct: 134 RRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKPAAAKKRTLEVSY 193
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +NQVEK+
Sbjct: 194 AVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFNQVEKL 246
>gi|224534614|ref|ZP_03675188.1| transcription termination/antitermination factor NusG [Borrelia
spielmanii A14S]
gi|224514083|gb|EEF84403.1| transcription termination/antitermination factor NusG [Borrelia
spielmanii A14S]
Length = 184
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E++ +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIKLLISEGVFSGVVLDVKAPIEKIEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+L++ + + + I VI F+G G+ P P++D E++ +
Sbjct: 61 WPGYILVELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPISDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVSVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|15594739|ref|NP_212528.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
B31]
gi|195941256|ref|ZP_03086638.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
80a]
gi|218249824|ref|YP_002374911.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi ZS7]
gi|223888778|ref|ZP_03623369.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 64b]
gi|224533004|ref|ZP_03673611.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi WI91-23]
gi|225549179|ref|ZP_03770154.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 94a]
gi|226320543|ref|ZP_03796105.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 29805]
gi|226321709|ref|ZP_03797235.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi Bol26]
gi|3914176|sp|O51355|NUSG_BORBU RecName: Full=Transcription antitermination protein nusG
gi|2688303|gb|AAC66771.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
B31]
gi|218165012|gb|ACK75073.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi ZS7]
gi|223885594|gb|EEF56693.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 64b]
gi|224512064|gb|EEF82458.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi WI91-23]
gi|225370405|gb|EEG99843.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 94a]
gi|226232898|gb|EEH31651.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi Bol26]
gi|226234055|gb|EEH32774.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 29805]
gi|312149289|gb|ADQ29360.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi N40]
Length = 184
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|51598651|ref|YP_072839.1| transcription antitermination factor [Borrelia garinii PBi]
gi|51573222|gb|AAU07247.1| transcription antitermination factor [Borrelia garinii PBi]
Length = 184
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++Q YS EKK + I +S +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVIQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDVVANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D ++ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYKRKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|111115223|ref|YP_709841.1| transcription antitermination factor [Borrelia afzelii PKo]
gi|110890497|gb|ABH01665.1| transcription antitermination factor [Borrelia afzelii PKo]
Length = 184
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|225552246|ref|ZP_03773186.1| transcription termination/antitermination factor NusG [Borrelia sp.
SV1]
gi|225371244|gb|EEH00674.1| transcription termination/antitermination factor NusG [Borrelia sp.
SV1]
Length = 184
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPVEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|255022530|ref|ZP_05294516.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-208]
Length = 132
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +
Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEK-- 118
Query: 118 VSSVFFEVGERVCV 131
+ FE+GE V V
Sbjct: 119 RAEADFEIGETVMV 132
>gi|224532126|ref|ZP_03672758.1| transcription termination/antitermination factor NusG [Borrelia
valaisiana VS116]
gi|224511591|gb|EEF81997.1| transcription termination/antitermination factor NusG [Borrelia
valaisiana VS116]
Length = 184
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGGVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVISFVGVNKGQKPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|216264305|ref|ZP_03436297.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 156a]
gi|221217654|ref|ZP_03589122.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 72a]
gi|225550080|ref|ZP_03771040.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 118a]
gi|215980778|gb|EEC21585.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 156a]
gi|221192331|gb|EEE18550.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 72a]
gi|225369192|gb|EEG98645.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi 118a]
gi|312148158|gb|ADQ30817.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi JD1]
Length = 184
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIE--HIMNQVEA 112
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ ++
Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEIK 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A + FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|216263782|ref|ZP_03435776.1| transcription termination/antitermination factor NusG [Borrelia
afzelii ACA-1]
gi|215979826|gb|EEC20648.1| transcription termination/antitermination factor NusG [Borrelia
afzelii ACA-1]
Length = 184
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ +
Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120
Query: 115 QRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYGFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEKI 176
+EKI
Sbjct: 181 IEKI 184
>gi|197294704|ref|YP_001799245.1| Transcription antitermination protein [Candidatus Phytoplasma
australiense]
gi|171854031|emb|CAM12004.1| Transcription antitermination protein [Candidatus Phytoplasma
australiense]
Length = 204
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
RWYI Q Y E + + R+ G+ L++ + P E R G+K + ER +P
Sbjct: 30 RWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSKERNLYP 89
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV I+ ++TD + +K+TP++ GFLG+ P P+++ EI ++ ++
Sbjct: 90 GYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKMGI---MSKP 146
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +G++V + G A+ V +D ++ ++ VEV +FGR PVE++++ ++I
Sbjct: 147 NYDHLIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDFKEI 203
>gi|229497072|ref|ZP_04390776.1| transcription termination/antitermination factor NusG
[Porphyromonas endodontalis ATCC 35406]
gi|229315997|gb|EEN81926.1| transcription termination/antitermination factor NusG
[Porphyromonas endodontalis ATCC 35406]
Length = 184
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/178 (37%), Positives = 110/178 (61%), Gaps = 5/178 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
R+Y+++ S EKK E+I + S + V + +P+E+V++ RK +KV ER
Sbjct: 7 EKRFYVLRAISGKEKKVKETIEREMSLPEPSTISQRVFRVVVPTEKVMTQRKTKKVIIER 66
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP- 117
+ GYVLI+ +M+ + + ++D P VIGFLG +NPSP++ +E+E ++++V+ + P
Sbjct: 67 PYLSGYVLIECMMSQLLINALRDLPDVIGFLGN-DNPSPLSLAEVEKLLHEVDTTNEGPD 125
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + F +GE V + DG F F+ ++ + EK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 VVDMQFVLGESVKIIDGAFVGFSATIEEILSEKKKLKVMVKIFGRKTPLELGYAQVEK 183
>gi|166154530|ref|YP_001654648.1| transcription antitermination protein NusG [Chlamydia trachomatis
434/Bu]
gi|166155405|ref|YP_001653660.1| transcription antitermination protein NusG [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335790|ref|ZP_07224034.1| transcription antitermination protein NusG [Chlamydia trachomatis
L2tet1]
gi|165930518|emb|CAP04012.1| transcription antitermination protein [Chlamydia trachomatis
434/Bu]
gi|165931393|emb|CAP06966.1| transcription antitermination protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 182
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ EI++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA-PVALSEEEIKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|255311121|ref|ZP_05353691.1| transcription antitermination protein NusG [Chlamydia trachomatis
6276]
gi|255317422|ref|ZP_05358668.1| transcription antitermination protein NusG [Chlamydia trachomatis
6276s]
Length = 182
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKHIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA-PVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|289525359|emb|CBJ14835.1| transcription antitermination protein [Chlamydia trachomatis
Sweden2]
gi|296434909|gb|ADH17087.1| transcription antitermination protein NusG [Chlamydia trachomatis
E/150]
gi|296438629|gb|ADH20782.1| transcription antitermination protein NusG [Chlamydia trachomatis
E/11023]
Length = 182
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA-PVALSEEEVKNILADLEEKKSGIVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|15605041|ref|NP_219825.1| transcription antitermination protein NusG [Chlamydia trachomatis
D/UW-3/CX]
gi|76789042|ref|YP_328128.1| transcription antitermination protein NusG [Chlamydia trachomatis
A/HAR-13]
gi|237804665|ref|YP_002888819.1| transcription antitermination protein NusG [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255348680|ref|ZP_05380687.1| transcription antitermination protein NusG [Chlamydia trachomatis
70]
gi|255503220|ref|ZP_05381610.1| transcription antitermination protein NusG [Chlamydia trachomatis
70s]
gi|255506898|ref|ZP_05382537.1| transcription antitermination protein NusG [Chlamydia trachomatis
D(s)2923]
gi|18202223|sp|O84322|NUSG_CHLTR RecName: Full=Transcription antitermination protein nusG
gi|3328738|gb|AAC67913.1| Transcriptional termination protein [Chlamydia trachomatis
D/UW-3/CX]
gi|76167572|gb|AAX50580.1| NusG [Chlamydia trachomatis A/HAR-13]
gi|231272965|emb|CAX09876.1| transcription antitermination protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|296435836|gb|ADH18010.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/9768]
gi|296436761|gb|ADH18931.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/11222]
gi|296437696|gb|ADH19857.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/11074]
gi|297140195|gb|ADH96953.1| transcription antitermination protein NusG [Chlamydia trachomatis
G/9301]
gi|297748449|gb|ADI50995.1| NusG [Chlamydia trachomatis D-EC]
gi|297749329|gb|ADI52007.1| NusG [Chlamydia trachomatis D-LC]
Length = 182
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA-PVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176
>gi|15835211|ref|NP_296970.1| transcription antitermination protein NusG [Chlamydia muridarum
Nigg]
gi|270285383|ref|ZP_06194777.1| transcription antitermination protein [Chlamydia muridarum Nigg]
gi|270289396|ref|ZP_06195698.1| transcription antitermination protein [Chlamydia muridarum Weiss]
gi|301336780|ref|ZP_07224982.1| transcription antitermination protein NusG [Chlamydia muridarum
MopnTet14]
gi|18203363|sp|Q9PK75|NUSG_CHLMU RecName: Full=Transcription antitermination protein nusG
gi|7190632|gb|AAF39426.1| transcription antitermination protein NusG [Chlamydia muridarum
Nigg]
Length = 182
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG
Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F
Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA-PVALSEEEVKNILADLEEKKSGVVQKHKF 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175
>gi|58699178|ref|ZP_00373995.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58534308|gb|EAL58490.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 246
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 68 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 127
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I PK V GFL G P + D EI + N + A +
Sbjct: 128 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 187
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 188 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 244
>gi|224533792|ref|ZP_03674380.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi CA-11.2a]
gi|224513085|gb|EEF83448.1| transcription termination/antitermination factor NusG [Borrelia
burgdorferi CA-11.2a]
Length = 186
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+
Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60
Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIE--HIMNQVEA 112
+PGY+LI+ + + + I VI F+G G+ P P+ D E++ ++
Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEIK 120
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
A + FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180
Query: 173 VEK 175
+E+
Sbjct: 181 IER 183
>gi|73666797|ref|YP_302813.1| transcription antitermination protein NusG [Ehrlichia canis str.
Jake]
gi|72393938|gb|AAZ68215.1| transcription antitermination protein NusG [Ehrlichia canis str.
Jake]
Length = 181
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E+K ++I GL E+ IP E V V+ +K+ +R+
Sbjct: 1 MKYEWYIIQVSSGSEEKVCQAILENSCVLGLGENFREVFIPYEEVTRVKHNKKILVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + +K P+V+ FL P ++DSE+E + ++ +V +
Sbjct: 61 SPGYVFLYMNLNENSINFVKSIPRVLNFLNNDFGVPKVISDSEMESMRKKMCQSVVDDTN 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+G+ V ++DG F FNG V+ ++++K V V+IFGR+T +E ++K+
Sbjct: 121 VVSFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|218960795|ref|YP_001740570.1| transcription antitermination protein NusG [Candidatus Cloacamonas
acidaminovorans]
gi|167729452|emb|CAO80363.1| transcription antitermination protein NusG [Candidatus Cloacamonas
acidaminovorans]
Length = 177
Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ YS E K +I L+ + L+ V + +P + +R+G+K+ +++ F
Sbjct: 1 MKWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFT 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
YV+++A MT ++ I V FLG + P P++ E++ ++ + V
Sbjct: 61 SYVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVY 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S + G+ V V GPF F GIV+ E +++ +EV +FGR TPVEL +QVE I
Sbjct: 121 S--YMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVELI 175
>gi|225631286|ref|ZP_03787965.1| Transcription antiterminator [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591020|gb|EEH12223.1| Transcription antiterminator [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 278
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D EI + N + A +
Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276
Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI++V E+ E + + E+ IP + V + + K E
Sbjct: 6 KWYIIKVGYGYEQGIRELVSNAV-------YFKEVFIPYQTVCNSKSDIKELCE------ 52
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI 103
V + + D+ + + TP G N + D EI
Sbjct: 53 -VYVYMHLCDESKNILNQTPGFCS--GESGNFEMILDDEI 89
>gi|225629888|ref|YP_002726679.1| Transcription antiterminator [Wolbachia sp. wRi]
gi|225591869|gb|ACN94888.1| Transcription antiterminator [Wolbachia sp. wRi]
Length = 278
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I PK V GFL G P + D EI + N + A +
Sbjct: 160 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276
Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI++V E+ E + + E+ IP + V + + K E
Sbjct: 6 KWYIIKVDYGYEQGIRELVSNAV-------YFKEVFIPYQTVCNSKSDIKELCE------ 52
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI 103
V + + D+ + + TP G N + D EI
Sbjct: 53 -VYVYMHLCDESKNILNQTPGFCS--GESGNFEMILDDEI 89
>gi|213019489|ref|ZP_03335295.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994911|gb|EEB55553.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 256
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SN E+K + I R +++ + IP E + + K +K R+ FP
Sbjct: 78 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 137
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D+EI + + + A +
Sbjct: 138 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 197
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S +E GE+V ++DG F +F G V V++EK +++EV I G+ T +EL QVEKI
Sbjct: 198 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 254
>gi|88658378|ref|YP_507745.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Arkansas]
gi|88599835|gb|ABD45304.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Arkansas]
Length = 179
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E+K ++I GL+ E+ IP E + V+ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + I+ P+V+ FL P ++++E+E + ++ +V S
Sbjct: 61 SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+G+ V ++DG F FNG V+ ++++K V V+IFGR+T +E ++K+
Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|58584909|ref|YP_198482.1| transcription antiterminator [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419225|gb|AAW71240.1| Transcription antiterminator [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 278
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SN E+K + + R G++ E+ IP E + V + +K R+ FP
Sbjct: 100 KWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + + + PK V GFL G P ++D EI + N + A +
Sbjct: 160 GYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S +E GE+V ++DG F +F G V +++EK +++EV I G+ T +EL QVEKI
Sbjct: 220 SHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQVEKI 276
Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI++V E+ +E + + E+ IP + V + + K E
Sbjct: 4 EHKWYIIKVNYGHERNILELVSNAV-------YFKEVFIPYQTVCNSKSDIKEVCE---- 52
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
V + + D+ + T G N V D E+
Sbjct: 53 ---VYVCMYLCDESRDILSKTLGFHS--GDSSNFKIVLDEEVN 90
>gi|190570973|ref|YP_001975331.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357245|emb|CAQ54667.1| transcription antiterminator [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 278
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SN E+K + I R +++ + IP E + + K +K R+ FP
Sbjct: 100 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D+EI + + + A +
Sbjct: 160 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S +E GE+V ++DG F +F G V V++EK +++EV I G+ T +EL QVEKI
Sbjct: 220 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 276
Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI++V EK E + E+ IP + V V+ K E
Sbjct: 6 KWYIIKVDYGYEKDICELATNTV-------YFKEVFIPYQTVCDVKSDIKELCE------ 52
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVE 111
V I + D+ + + GF G + ++D E+ I+ + E
Sbjct: 53 -VYICMHLCDESKNILNQM---TGFCGDESGHFEMISDDEV--ILKRKE 95
>gi|194246777|ref|YP_002004416.1| Transcription antitermination protein NusG [Candidatus Phytoplasma
mali]
gi|193807134|emb|CAP18572.1| Transcription antitermination protein NusG [Candidatus Phytoplasma
mali]
Length = 195
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
+WYI+Q YS CE ++ + + E+ P E V+ G+K ER
Sbjct: 19 EAKWYILQTYSGCENSVKNNLLQVADSMNMLDSIIEVVSPKEFYTEVKNDGKKKKKERHI 78
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRP 117
+ GY+ IK +MT + ++ +K+ P+V GFLG+ P P+++ EI+ I+ ++ +
Sbjct: 79 YSGYIFIKMIMTQRSFYLVKNVPRVNGFLGSLNNHTKPVPLSEREIKPILMKIGMLSKND 138
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + G+ V + G F+ V +VD ++ +V VE+ +FGR TP+E+ +Q ++I
Sbjct: 139 ---LNYLNGKNVEIISGSFSGQICKVLHVDNQQEKVTVEIDLFGRSTPIEIYCSQFKEI 194
>gi|269123300|ref|YP_003305877.1| NusG antitermination factor [Streptobacillus moniliformis DSM
12112]
gi|268314626|gb|ACZ01000.1| NusG antitermination factor [Streptobacillus moniliformis DSM
12112]
Length = 190
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 19/186 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WYI+ YS EKK + R+ L+ V I +P E++ +KG+ V R+ FP
Sbjct: 10 KKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFP 69
Query: 63 GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YVL++ + + ++ I++T V GF+G G +P P+ + E+E I ++
Sbjct: 70 SYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSDPLPMDEKEVEEIFSK 129
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + + + +EVG+ V DG G V+++D ++ + + + R T + L
Sbjct: 130 M--SNEDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTLG 183
Query: 170 YNQVEK 175
N+V K
Sbjct: 184 LNEVTK 189
>gi|42519937|ref|NP_965852.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42409674|gb|AAS13786.1| transcription antitermination protein NusG, putative [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 196
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 18 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + PK V GFL G P + D EI + N + A +
Sbjct: 78 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETRKL 137
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI
Sbjct: 138 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 194
>gi|189184706|ref|YP_001938491.1| transcription antitermination protein NusG [Orientia tsutsugamushi
str. Ikeda]
gi|189181477|dbj|BAG41257.1| transcription antitermination protein NusG [Orientia tsutsugamushi
str. Ikeda]
Length = 178
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 1/176 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WYI++ S E ++I + ++ G+ H EI IP +VV +++G+ +N ++
Sbjct: 1 MAYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKT 59
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY+LIK M D+V ++ K+ F G+ VT+ E++ +M Q+E Q P
Sbjct: 60 MPGYILIKMDMIDQVKDFMQKVVKLNRFPGSESKIVQVTEKEVQEMMVQLENKAQDPSFL 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+++GE V V+DGPF +F G ++ VD K + + + IF R T + + ++QVEK+
Sbjct: 120 EKYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 175
>gi|32475090|ref|NP_868084.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1]
gi|32445630|emb|CAD75636.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1]
gi|327542511|gb|EGF28986.1| transcription antitermination protein NusG [Rhodopirellula baltica
WH47]
Length = 225
Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPG 63
WYI++V N E E++ ++ + +I +PSE V + R G++ S+R+ PG
Sbjct: 50 WYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLLPG 109
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---S 120
Y+++ + D + +++ + F G+ P P+ ++E +N+ + +
Sbjct: 110 YIMVYMSINDDTWFLVREVGGISDFTGSAGKPQPMEPEDVERFINRPAVDDEDETPIKTA 169
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ F+VG+RV V +G F + G V VDE RV V + IFGR P+EL + QVE +
Sbjct: 170 IPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVEPL 225
>gi|68171883|ref|ZP_00545209.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Sapulpa]
gi|67998694|gb|EAM85420.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
str. Sapulpa]
Length = 179
Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+QV S E+K ++I GL+ E+ IP E + V+ +KV +R+
Sbjct: 1 MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
PGYV + + + + I+ P+V+ FL P ++++E+E + ++ +V S
Sbjct: 61 SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V FE+G+ V ++DG F FNG V+ +++++ V V+IFGR+T +E ++K+
Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDEKIAGVSVMIFGRLTKIEFKLEHIQKV 177
>gi|269959044|ref|YP_003328833.1| transcription antitermination protein [Anaplasma centrale str.
Israel]
gi|269848875|gb|ACZ49519.1| transcription antitermination protein [Anaplasma centrale str.
Israel]
Length = 186
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYIVQV S E+K + I R + G+ + +E+ IP E V ++ +KV R+ P
Sbjct: 8 HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTRIKYNKKVAMRRKLSP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + ++D + ++ PKV FL P + SE+E + + + AV SS
Sbjct: 68 GYVFLHMKLSDDAINFVRRVPKVSNFLLDDAGVPKVIPSSEMETMRSSMCQAVSSGTSSE 127
Query: 122 --FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG V+ V+E+K + V+IFGR+T +E + ++K+
Sbjct: 128 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGISVMIFGRLTKIEFKLSSIQKV 184
>gi|254994761|ref|ZP_05276951.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Mississippi]
gi|255002882|ref|ZP_05277846.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Puerto Rico]
gi|255004013|ref|ZP_05278814.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Virginia]
Length = 186
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYIVQV S E+K + I R + G+ + +E+ IP E V V+ +KV R+ P
Sbjct: 8 HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAV--QRPVS 119
GYV + ++D + ++ PKV FL P + SE+E + + + AV +
Sbjct: 68 GYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASE 127
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG V+ V+E+K V V+IFGR+T +E + ++K+
Sbjct: 128 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 184
>gi|56416541|ref|YP_153615.1| transcription antitermination protein [Anaplasma marginale str. St.
Maries]
gi|222474909|ref|YP_002563324.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Florida]
gi|56387773|gb|AAV86360.1| transcription antitermination protein [Anaplasma marginale str. St.
Maries]
gi|222419045|gb|ACM49068.1| transcription antitermination protein (NusG) [Anaplasma marginale
str. Florida]
Length = 188
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYIVQV S E+K + I R + G+ + +E+ IP E V V+ +KV R+ P
Sbjct: 10 HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAV--QRPVS 119
GYV + ++D + ++ PKV FL P + SE+E + + + AV +
Sbjct: 70 GYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASE 129
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG V+ V+E+K V V+IFGR+T +E + ++K+
Sbjct: 130 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 186
>gi|121730820|ref|ZP_01682892.1| transcription termination factor rho [Vibrio cholerae V52]
gi|121627605|gb|EAX60295.1| transcription termination factor rho [Vibrio cholerae V52]
Length = 123
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/117 (39%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N++E A + P
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPR 123
>gi|88607731|ref|YP_505588.1| transcription termination/antitermination factor NusG [Anaplasma
phagocytophilum HZ]
gi|88598794|gb|ABD44264.1| transcription termination/antitermination factor NusG [Anaplasma
phagocytophilum HZ]
Length = 186
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WYI+QV S E+K + I R + G+ + E+ IP E V ++ +KV +++ P
Sbjct: 8 HEWYIIQVSSGNEEKISQMILERSMQLGMSDMFREVFIPYEEVTKIKYNKKVQIKKKLSP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSS- 120
GYV + + D + ++ PKV FL P + +E+E + +++ V V
Sbjct: 68 GYVFLYMKLCDDSVNFVRKIPKVSNFLLDDFGVPKVIPLAEMEAMRSRMCQGVASDVGDD 127
Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V ++DG F FNG ++ V+EEK V V+IFGR+T +E ++ ++K+
Sbjct: 128 ICGFEVGDEVVINDGLFQDFNGKIEYVNEEKKVAGVSVMIFGRLTKIEFKFSSIQKV 184
>gi|148284111|ref|YP_001248201.1| transcription antitermination protein [Orientia tsutsugamushi str.
Boryong]
gi|146739550|emb|CAM79279.1| transcription antitermination protein [Orientia tsutsugamushi str.
Boryong]
Length = 184
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 1/175 (0%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WYI++ S E ++I + ++ G+ H EI IP +VV +++G+ +N ++
Sbjct: 8 AYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTM 66
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+LIK M D+V ++ K+ F G VT+ E++ +M Q+E Q P
Sbjct: 67 PGYILIKMDMIDQVKDFMQKVVKLNRFPGNESKIVQVTEKEVQEMMVQLENKAQDPSFLE 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+++GE V V+DGPF +F G ++ VD K + + + IF R T + + ++QVEK+
Sbjct: 127 KYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 181
>gi|296500930|ref|YP_003662630.1| transcription antitermination protein NusG [Bacillus thuringiensis
BMB171]
gi|296321982|gb|ADH04910.1| transcription antitermination protein NusG [Bacillus thuringiensis
BMB171]
Length = 149
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 5/151 (3%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
G+ + + +P E V ++ G++ +R+ FPGYVL++ +MTD ++ +++TP V GF
Sbjct: 1 MGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDDSWYVVRNTPGVTGF 60
Query: 89 L---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
+ G+G PSP+ + E+ IM + + V FE+ E V V++GPFA + G ++
Sbjct: 61 VGSSGSGSKPSPLLEEEVVTIMKHM--GMDNEVVDFDFELHETVRVNEGPFADYTGAIEE 118
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 119 IDVEKKKVSVLVDMFGRETPVELDFHQIEKL 149
>gi|222446920|pdb|2K06|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
Nusg
Length = 123
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123
>gi|167957245|ref|ZP_02544319.1| hypothetical protein cdiviTM7_01145 [candidate division TM7
single-cell isolate TM7c]
Length = 113
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 65/104 (62%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY V YS E K +SI R++ + + + +P E+ + ++ G++ +R+ F
Sbjct: 9 TRQWYAVHTYSGYEDKVADSIRQRINAVDMADKIFAVMVPKEKQIEIKNGKRKIVDRKIF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105
GY L++ +T++ ++ +++TP V GF+G+G P+PV+D+EI+
Sbjct: 69 QGYCLVEMKLTEETWYIVRNTPGVTGFVGSGTEPTPVSDAEIKK 112
>gi|297519742|ref|ZP_06938128.1| transcription antitermination protein NusG [Escherichia coli OP50]
Length = 114
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQ 109
GYVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+
Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114
>gi|3810894|dbj|BAA34066.1| transcription antitermination protein [Vibrio alginolyticus]
Length = 113
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP
Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMN 108
GYVL++ +M D+ +H ++ P+V+GF+ GT + P+P+TD E + I+N
Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILN 113
>gi|309379175|emb|CBX22306.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 124
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY+VQ YS EK ++ R++R + I +P E+VV +R GR+ SER+
Sbjct: 1 MSKKWYVVQAYSWFEKNVQRTLEERIAREEMVDYFGHILLPVEKVVDIRNGRQTISERKS 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+P YVL++ M+D ++ +K TP+V GF+ GT P P++ E E I+ QV+ ++P
Sbjct: 61 YPVYVLVEMEMSDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120
Query: 120 SVFF 123
V
Sbjct: 121 KVEL 124
>gi|222834348|gb|EEE72825.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P FEVGE
Sbjct: 1 MEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTLFEVGE 60
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 61 MVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 109
>gi|270651531|ref|ZP_06222258.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae HK1212]
gi|270317121|gb|EFA28748.1| transcription termination/antitermination factor NusG [Haemophilus
influenzae HK1212]
Length = 110
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
M D+ +H +K P+V+GF+G + P+P++ E + I+N++E +P + GE
Sbjct: 1 MEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRNEYHPGE 60
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI
Sbjct: 61 EVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 109
>gi|54020638|ref|YP_116165.1| transcription antitermination protein NusG [Mycoplasma
hyopneumoniae 232]
gi|72080964|ref|YP_288022.1| transcription antitermination protein NusG [Mycoplasma
hyopneumoniae 7448]
gi|53987811|gb|AAV28012.1| transcription antitermination protein [Mycoplasma hyopneumoniae
232]
gi|71914088|gb|AAZ53999.1| transcription antitermination protein [Mycoplasma hyopneumoniae
7448]
gi|312601579|gb|ADQ90834.1| Transcription antitermination protein [Mycoplasma hyopneumoniae
168]
Length = 190
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60
+WY++ S+ E A+ + R+ L+ EIT +P + G K R
Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV--- 114
+ GY IK M DK + +++T V G +G+ G P+P++ + E + + + +
Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124
Query: 115 -QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
Q ++ +E+G+ V V+ GPF+ G + ++E K+ + VE+ +FGR TP Y
Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNETKTLITVELESVFGRRTPATFEYKN 184
Query: 173 VEKI 176
++K+
Sbjct: 185 LKKV 188
>gi|50364906|ref|YP_053331.1| transcription antitermination factor [Mesoplasma florum L1]
gi|50363462|gb|AAT75447.1| transcription antitermination factor [Mesoplasma florum L1]
Length = 209
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W++V + E+K + + ++ ++ V +I I V+ + G++ E+ FPG
Sbjct: 19 QWFVVNSQTGHEEKVLNDLKNKIKAEKMEDQVFDIKISKGTVL-TKTGKQK--EKNLFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQV---------- 110
Y+ I +M+++ + +++TP V GF+G+ G P P+T E+ ++
Sbjct: 76 YLFINMIMSEESWFVVRNTPGVTGFIGSSGRGAKPFPLTVDEVIEMLIPKTEVIVEEIET 135
Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
EA ++P+ + F VG+ V V +G A G V ++D EK V + +FGR T
Sbjct: 136 VDVHNEAVAKKPLFTAPFVVGDFVRVKEGINAGEEGEVSSMDFEKGVAVVLIEMFGRYTN 195
Query: 166 VELAYNQVEKI 176
+E+++ VE +
Sbjct: 196 LEISFENVEPV 206
>gi|71893985|ref|YP_279431.1| transcription antitermination protein NusG [Mycoplasma
hyopneumoniae J]
gi|71852112|gb|AAZ44720.1| transcription antitermination protein [Mycoplasma hyopneumoniae J]
Length = 190
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60
+WY++ S+ E A+ + R+ L+ EIT +P + G K R
Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV--- 114
+ GY IK M DK + +++T V G +G+ G P+P++ + E + + + +
Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124
Query: 115 -QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
Q ++ +E+G+ V V+ GPF+ G + ++ K+ + VE+ +FGR TP Y
Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEYKN 184
Query: 173 VEKI 176
++K+
Sbjct: 185 LKKV 188
>gi|290954462|ref|ZP_06559083.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica URFT1]
gi|295312067|ref|ZP_06802880.1| transcription antitermination protein nusG [Francisella tularensis
subsp. holarctica URFT1]
Length = 126
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
SER++FPGYVLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I+ VE +
Sbjct: 1 RKSERKYFPGYVLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGS 60
Query: 114 VQ--RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
P + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++
Sbjct: 61 KSTVEPRLRKSYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFS 120
Query: 172 QVEK 175
QVEK
Sbjct: 121 QVEK 124
>gi|331703848|ref|YP_004400535.1| transcription antitermination protein NusG [Mycoplasma mycoides
subsp. capri LC str. 95010]
gi|256383992|gb|ACU78562.1| transcription antitermination protein nusg [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256384824|gb|ACU79393.1| transcription antitermination protein nusg [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296455387|gb|ADH21622.1| transcription antitermination protein nusG [synthetic Mycoplasma
mycoides JCVI-syn1.0]
gi|328802403|emb|CBW54558.1| Transcription antitermination protein NusG [Mycoplasma mycoides
subsp. capri LC str. 95010]
Length = 213
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I +VS + G+ + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVS-KSGKSSIKNK--FPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN------------ 108
Y+ I +M++K + I++TP V GF+G+ G PSP+T E +++
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNMLVPNLEEIEQAHEQ 135
Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ EA ++ + + F+VG+ V V G + G VK++D K V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195
Query: 162 RVTPVELAYNQVEKI 176
R T +E+++ VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210
>gi|83319581|ref|YP_424106.1| transcription antitermination protein NusG [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
gi|83283467|gb|ABC01399.1| transcription antitermination protein NusG [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
Length = 214
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 26/196 (13%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I VS + G+ + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVS-KSGKASIKNK--FPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM------------- 107
Y+ I +M++K + I++TP V GF+G+ G PSP+T E +++
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEE 135
Query: 108 -------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ EA ++ + + F++G+ V V G + G VK++D K V + +F
Sbjct: 136 EKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMF 195
Query: 161 GRVTPVELAYNQVEKI 176
GR T +E+++ VE I
Sbjct: 196 GRWTTLEVSFKNVEPI 211
>gi|313665044|ref|YP_004046915.1| NusG family protein [Mycoplasma leachii PG50]
gi|312949338|gb|ADR23934.1| NusG family protein [Mycoplasma leachii PG50]
Length = 214
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 26/196 (13%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I VS + G+ + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVS-KSGKTSIKNK--FPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM------------- 107
Y+ I +M++K + I++TP V GF+G+ G PSP+T E +++
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEE 135
Query: 108 -------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ EA ++ + + F++G+ V V G + G VK++D K V + +F
Sbjct: 136 EKEQETKQKNEAVAKKALFTADFKIGDVVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMF 195
Query: 161 GRVTPVELAYNQVEKI 176
GR T +E+++ VE I
Sbjct: 196 GRWTTLEVSFKNVEPI 211
>gi|319777680|ref|YP_004137331.1| transcription antitermination protein nusg [Mycoplasma fermentans
M64]
gi|318038755|gb|ADV34954.1| Transcription antitermination protein nusG [Mycoplasma fermentans
M64]
Length = 201
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-------------ERV 45
M +WY++ S E K VE++ R+ ++ P + +
Sbjct: 1 MDKNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKEL 60
Query: 46 VSVRKGRK-VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDS 101
+ G + + GY+ I MTD+ + +++T V G +G+ G P+PV+
Sbjct: 61 EKQKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQH 120
Query: 102 EIEHIMNQ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+I+ + ++ + V+ F++GE V + DGPF G V E +V VE+
Sbjct: 121 QIDKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIE 180
Query: 159 IFGRVTPVELAYNQVE 174
G+ TP + Y +++
Sbjct: 181 YLGKKTPADFEYKEIK 196
>gi|150020536|ref|YP_001305890.1| NusG antitermination factor [Thermosipho melanesiensis BI429]
gi|149793057|gb|ABR30505.1| NusG antitermination factor [Thermosipho melanesiensis BI429]
Length = 356
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 41 PSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD 100
P+++ + + + R+ FPGY+ ++ +M D+ +H ++ P +I F+ +G P P+ D
Sbjct: 217 PTKKEIRI----QKVKVRKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPLPLND 272
Query: 101 SEIEHIMN-------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
E + ++ E + FE+G+ V + GPF F G VK ++ E + +
Sbjct: 273 KEAKVLLRLSGEEEIPKEEKSKEVKIEFDFEIGDSVKIISGPFEGFVGTVKEINPEHNEL 332
Query: 154 HVEVVIFGRVTPVELAYNQVEKIV 177
V V IFGR TPV + ++VEK+V
Sbjct: 333 KVTVTIFGRETPVTVHTSEVEKVV 356
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
M RWYI+Q + E A ++ ++ GL+H+++ + +P E V+
Sbjct: 1 MKKRWYILQALAGYETAAKGNLEAKIKAQGLEHVISRVLLPEEIVI 46
>gi|301321402|gb|ADK70045.1| NusG family protein [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 213
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I +VS + G+ + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVS-KSGKSSIKNK--FPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN------------ 108
Y+ I +M++K + I++TP V GF+G+ G PSP+T E +I+
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135
Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ EA ++ + + F+VG+ V V G + G VK++D K V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195
Query: 162 RVTPVELAYNQVEKI 176
R T +E+++ VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210
>gi|239618207|ref|YP_002941529.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1]
gi|239507038|gb|ACR80525.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1]
Length = 354
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--- 110
+ R +PGY+ I+ +MTD+ ++ +K TP V+ F+ G P + EI+ ++ V
Sbjct: 226 KITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQPIELKPKEIKALLRLVGLE 285
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E + V FEV E V ++ GPF F G + +D E+ V V V IFGR TPV L
Sbjct: 286 EYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVML 345
Query: 169 AYNQVEKIV 177
+++EKIV
Sbjct: 346 NLSEIEKIV 354
Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE 43
M +WYI+Q YS E E++ ++ G DHL I +P E
Sbjct: 1 MRKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPEE 43
>gi|238810255|dbj|BAH70045.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 205
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-------------ERV 45
M +WY++ S E K VE++ R+ ++ P + +
Sbjct: 5 MDKNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKEL 64
Query: 46 VSVRKGRK-VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDS 101
+ G + + GY+ I MTD+ + +++T V G +G+ G P+PV+
Sbjct: 65 EKQKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQH 124
Query: 102 EIEHIMNQ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+I+ + ++ + V+ F++GE V + DGPF G V E +V VE+
Sbjct: 125 QIDKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIE 184
Query: 159 IFGRVTPVELAYNQVE 174
G+ TP + Y +++
Sbjct: 185 YLGKKTPADFEYKEIK 200
>gi|20808504|ref|NP_623675.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
gi|20517125|gb|AAM25279.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
Length = 179
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 9/172 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V Y N EK+ E I D L+ + +P ++ R+G+ E + FPGY
Sbjct: 16 WYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFPGY 75
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V +KAVMT +V I+ V F+G G P P+T E++ Q + + + F+
Sbjct: 76 VFVKAVMTPEVMAAIRRINGVAHFVGGGNEPVPITPEEVKRARIQDDLSEE-------FK 128
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++DGPF +F G + + E ++++ + +F R ++ + Q+ KI
Sbjct: 129 AGDTVMITDGPFENFIGKIIKI--EGRKINIALSLFDREMGIDFSPEQIMKI 178
>gi|42561478|ref|NP_975929.1| transcription antitermination protein NUSG [Mycoplasma mycoides
subsp. mycoides SC str. PG1]
gi|42492977|emb|CAE77571.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycoplasma mycoides
subsp. mycoides SC str. PG1]
Length = 213
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 25/195 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ + E+K + + ++ + ++ V I I +VS + +S + FPG
Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSK---SEKSSIKNKFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMN------------ 108
Y+ I +M++K + I++TP V GF+G+ G PSP+T E +I+
Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135
Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ EA ++ + + F+VG+ V V G + G VK++D K V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195
Query: 162 RVTPVELAYNQVEKI 176
R T +E+++ VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210
>gi|225850723|ref|YP_002730957.1| transcription termination/antitermination factor NusG
[Persephonella marina EX-H1]
gi|225646577|gb|ACO04763.1| transcription termination/antitermination factor NusG
[Persephonella marina EX-H1]
Length = 264
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+ ++ E + FPGY+LIKA + D + IK TP +IGF+ G P P+ D +IE +
Sbjct: 136 ENKTEARIVLENKVFPGYLLIKAELNDDLIDLIKKTPFIIGFVSAGGMPVPLKDEDIEKV 195
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++Q++ + V + F+ G++V + +GPF +F G+V+ V EK ++ V + IFGR TPV
Sbjct: 196 LSQIQKGAPK-VKKLLFQRGDQVRIIEGPFMNFTGVVEEVIPEKEKLVVAISIFGRSTPV 254
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 255 ELEFSQVEKI 264
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKV 54
WY + SN E +A E++ L + + HLV E+ +P+E V ++ G++
Sbjct: 27 WYALYTQSNLEIRAKENLIKMLEMNNMKHLVDEVLVPAEEKVVIKALGKEK 77
>gi|217076740|ref|YP_002334456.1| transcription termination/antitermination factor NusG [Thermosipho
africanus TCF52B]
gi|217036593|gb|ACJ75115.1| transcription termination/antitermination factor NusG [Thermosipho
africanus TCF52B]
Length = 354
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 34 LVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
+ I P+++ + V + R+ FPGY+ ++ +M D+ +H ++ P +I F+ +G
Sbjct: 209 RIEIIDFPTKKEIKV----QKVKVRKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGG 264
Query: 94 NPSPVTDSEIEHIMNQVE-------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
P P+ D E + ++ + FEVG+ V + GPF F G VK +
Sbjct: 265 RPIPINDKEAKVLLRLAGIEEAPQVEKEKEIKIEFDFEVGDSVKIVSGPFEGFVGSVKEI 324
Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E + + V V IFGR TPV + ++VEK+
Sbjct: 325 NPEHNELKVSVTIFGRETPVTVHTSEVEKV 354
Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
M RWYI+Q + E A E++ ++ GL+H+++ + +P E V+
Sbjct: 1 MKKRWYILQTLAGYEATAKENLEAKIKAQGLEHVISRVLLPEEVVI 46
>gi|294155399|ref|YP_003559783.1| transcription anti-termination factor NusG [Mycoplasma crocodyli
MP145]
gi|291599945|gb|ADE19441.1| transcription anti-termination factor NusG [Mycoplasma crocodyli
MP145]
Length = 198
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--------------TEITIPSERVVSVRK 50
WY+V S E + VE++ R+ + H + P E ++
Sbjct: 6 WYMVSTVSGKEDRVVEALKNRIIAEEVSHSFDSTATENGAFKIFKKPVLTPKEAEKKLKG 65
Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+PGY+ IK MTD+ + I++T V G +G+ G P+PV + EI +
Sbjct: 66 EEYKIKWANMYPGYIFIKMDMTDEAWFVIRNTQFVTGLIGSSGKGAKPTPVPEKEIRKSL 125
Query: 108 NQVEAAVQRPVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
Q + A++ + V F+ E V V DGP+ G + ++D K +E+ FG+
Sbjct: 126 IQEDKALEDYKTGKYLVEFKADEIVEVIDGPYQGEKGPILSIDHNKQTAIIELESFGKKV 185
Query: 165 PVELAY 170
PVEL Y
Sbjct: 186 PVELEY 191
>gi|154249533|ref|YP_001410358.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1]
gi|154153469|gb|ABS60701.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1]
Length = 354
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--- 109
+ +++ +PGY+ ++ +M D + ++ TP V+GF+ G P P+ E+ +I+
Sbjct: 225 QKTKKKKLYPGYLFVEMIMNDHTWEFVRGTPFVMGFVSAGGRPLPLKPEEVHYILRMAGL 284
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
V+A Q + + G+ V + GPF F+GIVK VDEEK + V V IFGR TPV
Sbjct: 285 EETVQAKPQVAKVELEIQPGDAVKIITGPFEGFSGIVKEVDEEKQELKVNVTIFGRETPV 344
Query: 167 ELAYNQVEKI 176
+ N+VEKI
Sbjct: 345 TVHLNEVEKI 354
Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
M WYI+ + E K E++ ++ G +LV+ + + E V+
Sbjct: 1 MKKEWYIIHTITGYENKVKENLEAKIEAQGYRNLVSRVIVLEETVI 46
>gi|163784527|ref|ZP_02179388.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
gi|159880203|gb|EDP73846.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
Length = 259
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/130 (41%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+ K+ E + FPGY+LIKA +TD++ IK TP +IGF+ G P P+T+ E++ +
Sbjct: 131 ENKTEAKIVLENKIFPGYLLIKAKLTDELIDLIKKTPYIIGFVSAGGVPVPLTEEEVKRV 190
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ Q++ + V + F G++V V +GPF +F G+V+ V EK ++ V + IFGR TPV
Sbjct: 191 LGQIQKGAPK-VKKLLFATGDKVRVIEGPFMNFTGVVEKVIPEKEKLIVSISIFGRSTPV 249
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 250 ELEFSQVEKI 259
Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKV 54
+WY + SN E +A E++ +L + + LV E+ +P+E V ++ G++
Sbjct: 19 EKKWYALYTQSNLEVRAKENLLKQLELNNMKDLVDEVVVPAEEKVVIKALGKEK 72
>gi|15606944|ref|NP_214326.1| transcription antitermination protein NusG [Aquifex aeolicus VF5]
gi|14423773|sp|O67757|NUSG_AQUAE RecName: Full=Transcription antitermination protein nusG
gi|28373569|pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373570|pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373571|pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373572|pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
gi|28373573|pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group I222
gi|29726735|pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726736|pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726737|pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726738|pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
gi|29726739|pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
gi|2984191|gb|AAC07722.1| transcription antitermination protein NusG [Aquifex aeolicus VF5]
Length = 248
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/130 (42%), Positives = 83/130 (63%), Gaps = 2/130 (1%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+ K+ + + FPGY+LIKA M DK+ I+ TP V + G P P+ + E+++I
Sbjct: 121 ENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNI 180
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+NQ++ V+ S V FE G++V V +GPF +F G V+ V EK ++ V + IFGR+TPV
Sbjct: 181 LNQIKRGVKP--SKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPV 238
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 239 ELDFDQVEKI 248
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV 54
+ +WY +QV E +A E++ L GL LV E+ +P+E V +R +G++
Sbjct: 9 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEK 63
>gi|293363571|ref|ZP_06610327.1| NusG family protein [Mycoplasma alligatoris A21JP2]
gi|292552920|gb|EFF41674.1| NusG family protein [Mycoplasma alligatoris A21JP2]
Length = 198
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 20/186 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--------------TEITIPSERVVSVRK 50
WY+V S E K VE++ R+ ++H + P E +
Sbjct: 6 WYMVSTVSGKEDKVVEALRNRIIAEQVNHSFDSTATDAGAFKVFRKPVLSPKEAEKKQKG 65
Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+PGY+ IK MTD+ + I++T V G +G+ G P+PV + EI+ +
Sbjct: 66 EDYKVKWVNMYPGYIFIKMDMTDEAWFVIRNTQYVTGLIGSSGKGAKPTPVQNKEIKKSL 125
Query: 108 NQVEAAVQRPVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
Q + A+ S V F+ GE V V DGP+ G + +D +K V + FG+
Sbjct: 126 IQEQKALDDFESGKYLVTFKDGEIVEVIDGPYQGEKGPISQIDHDKQTAVVMIESFGKQV 185
Query: 165 PVELAY 170
VE+ Y
Sbjct: 186 SVEIEY 191
>gi|222099194|ref|YP_002533762.1| Transcription antitermination protein nusG [Thermotoga neapolitana
DSM 4359]
gi|221571584|gb|ACM22396.1| Transcription antitermination protein nusG [Thermotoga neapolitana
DSM 4359]
Length = 353
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 13 NCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
E K E + R + + V + P+ + + + K +K R+ FPGYV I+ +M
Sbjct: 187 GKEVKQGEMLAEARKFFAKVSGRVEVVDYPTRKEIRIYKTKK----RKLFPGYVFIEMIM 242
Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-----EAAVQRPVSSVFFEVG 126
D+ Y+ ++ P V+GF+ +G P PV D EI I+ E + + F+VG
Sbjct: 243 NDEAYNFVRSVPYVMGFVSSGGQPIPVKDKEIRPILRLAGLEEYEEKKKPVKVEMGFKVG 302
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V + GPF F G++K +D E+ + V V IFGR TPV L ++VEKI
Sbjct: 303 DTVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI 352
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV 45
M WYI+ S E+K E+I ++ +G+ +LV I IP E V
Sbjct: 1 MKKNWYIIVTMSGYEEKVKENIERKIEATGIRNLVGRIVIPEEVV 45
>gi|319790550|ref|YP_004152183.1| NusG antitermination factor [Thermovibrio ammonificans HB-1]
gi|317115052|gb|ADU97542.1| NusG antitermination factor [Thermovibrio ammonificans HB-1]
Length = 246
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
R K+ R +PGY+ IKA + + I+ P+V+GF+ G P V+++EI+ +
Sbjct: 117 ENRVEAKIELRDRLYPGYIFIKADLDKDLQSLIRRVPRVLGFVSAGGKPVTVSEAEIQAM 176
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+++ V R + F++G++V + +GPF F G + +D E ++ V V IF R TPV
Sbjct: 177 KERLKRGVPRIR-KLKFDIGDKVKIKEGPFIGFEGTISEIDPEHGKLIVLVNIFDRQTPV 235
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 236 ELEFDQVEKI 245
Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKV 54
+WY + V S E + ++ L G++ V EI IP E+VV G++
Sbjct: 3 EKKWYTLHVQSGFEFRVKANLEKALKEEGVEDKVEEIFIPAVEKVVFKALGKEK 56
>gi|328478515|gb|EGF48215.1| transcription termination/antitermination factor NusG
[Lactobacillus rhamnosus MTCC 5462]
Length = 114
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++ YS E K ++ R S +D + + +P E + G++ ++ F
Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIE 104
PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+
Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVA 114
>gi|47458980|ref|YP_015842.1| transcription antitermination protein NusG [Mycoplasma mobile 163K]
gi|47458308|gb|AAT27631.1| transcription antitermination factor [Mycoplasma mobile 163K]
Length = 215
Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 95/183 (51%), Gaps = 13/183 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-----SERVVSVRKGRK--VNSE 57
WY + V S E+K +ES+ ++ G+ ++ EI I +E+ + ++ + +
Sbjct: 29 WYTISVVSGKEEKVLESLNNKIKSLGMGEVIKEIKIFQTPYLTEKELEKKRNGENFKVKQ 88
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV 114
+ + GY+ +K +MTD V+ +++T V G +G+ G P+P+++ + +++ + +
Sbjct: 89 EKLYKGYIFMKMIMTDDVWFMVRNTENVTGLIGSSGKGTKPTPISERKFSKMLDFEKKKI 148
Query: 115 QRPVS---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ S + F++G V +GPF GI+ ++ K+ + + FGR TPVE +
Sbjct: 149 EEFGSGNYNSKFKIGLVAKVLEGPFKDEEGIILENNDIKALATIAIESFGRKTPVEFEHK 208
Query: 172 QVE 174
++
Sbjct: 209 NLK 211
>gi|148269607|ref|YP_001244067.1| NusG antitermination factor [Thermotoga petrophila RKU-1]
gi|281411675|ref|YP_003345754.1| NusG antitermination factor [Thermotoga naphthophila RKU-10]
gi|147735151|gb|ABQ46491.1| transcription antitermination protein nusG [Thermotoga petrophila
RKU-1]
gi|281372778|gb|ADA66340.1| NusG antitermination factor [Thermotoga naphthophila RKU-10]
Length = 353
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--- 110
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+
Sbjct: 225 KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLE 284
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E + + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L
Sbjct: 285 EYEEKKKPVKVEIGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVL 344
Query: 169 AYNQVEKI 176
++VEKI
Sbjct: 345 HVSEVEKI 352
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV 45
M WYIV S E++ E+I ++ +G+ +LV I IP E V
Sbjct: 1 MKKNWYIVLTMSGYEERVKENIEKKIEATGIKNLVGRIVIPEEVV 45
>gi|206895164|ref|YP_002247282.1| transcription antitermination factor [Coprothermobacter
proteolyticus DSM 5265]
gi|206737781|gb|ACI16859.1| transcription antitermination factor [Coprothermobacter
proteolyticus DSM 5265]
Length = 182
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRF 60
+WYIV E E+I R +G + ++++ +P E + R + +R
Sbjct: 2 KKWYIVTTVHGKESAVAEAIKLRAENAG-NTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60
Query: 61 FPGYVLIKAV-------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
+PGYV ++ + + + I+ TP V GF+ T P PV D+E+E ++ +
Sbjct: 61 YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQK--- 117
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ ++ V + G+ V V DG G+V +VD EK +V V++ +FGR +L Q
Sbjct: 118 SREQEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQ 177
Query: 173 VEK 175
V K
Sbjct: 178 VRK 180
>gi|307297340|ref|ZP_07577146.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916600|gb|EFN46982.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
Length = 355
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK--GRK-----VNSER 58
Y+V S + K + G + R + I +E V + GRK +
Sbjct: 173 YLVHPDS-YDAKVAKK-GNHVKRGQMFGETRRIFSKTEGRVEISDLPGRKEIKIFKITRT 230
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP- 117
R +PGYV I+ +M ++ ++ +K+TP V+ F+ G P + + EI+ ++ V
Sbjct: 231 RLYPGYVFIEMIMNEETWNLVKNTPNVVNFVSVGGQPVQLKEKEIKALLRLVGIEEYEEH 290
Query: 118 -----VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V F+VGE V ++ GPF F G V ++D ++ + V V IFGR TPV L+ ++
Sbjct: 291 MGGPVKIEVEFDVGEVVRINSGPFEDFVGKVTDLDPDRQELKVVVSIFGRETPVILSLSE 350
Query: 173 VEKIV 177
VEKIV
Sbjct: 351 VEKIV 355
Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
M +W+I+Q YS E E+I ++ G H+ +I +P E +
Sbjct: 1 MRKKWFIIQTYSGLENSIREAIQIKIESFGFSHMFGKILVPEETKLDRTN 50
>gi|237756125|ref|ZP_04584698.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237691710|gb|EEP60745.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 265
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
R ++ E + FPGY+LIKA +TD + +K TP +IGF+ G P P+ ++++ +
Sbjct: 137 ENRTEARIVLENKIFPGYILIKAKLTDDLIDLVKKTPFLIGFVSAGGKPVPLNENDVMKV 196
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ Q++ + + + G+ + V +GPF +F G V+ V +K ++ + IFGR TPV
Sbjct: 197 LGQIQKGAPKAK-KLLYTKGDIIRVIEGPFMNFTGTVEEVFPDKEKLIALITIFGRATPV 255
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 256 ELEFSQVEKI 265
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV 54
+WY + SN E +A E+ L + L+HLV E+ +P+E V ++ +G++
Sbjct: 25 EKKWYALYTQSNLEIRAKENFIKNLKLNNLEHLVDEVIVPAEEKVVLKSQGKER 78
>gi|128916|sp|P29397|NUSG_THEMA RecName: Full=Transcription antitermination protein nusG
gi|48183|emb|CAA77858.1| NusG [Thermotoga maritima MSB8]
Length = 353
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--- 110
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+
Sbjct: 225 KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLE 284
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E + + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L
Sbjct: 285 EYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVL 344
Query: 169 AYNQVEKI 176
++VEKI
Sbjct: 345 HVSEVEKI 352
Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV 45
M +WYIV S E+K E+I ++ +G+ +LV I IP E V
Sbjct: 1 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVV 45
>gi|15643219|ref|NP_228263.1| N utilization substance protein G [Thermotoga maritima MSB8]
gi|4980959|gb|AAD35536.1|AE001723_6 N utilization substance protein G [Thermotoga maritima MSB8]
Length = 354
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--- 110
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+
Sbjct: 226 KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLE 285
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E + + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L
Sbjct: 286 EYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVL 345
Query: 169 AYNQVEKI 176
++VEKI
Sbjct: 346 HVSEVEKI 353
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV 45
M +WYIV S E+K E+I ++ +G+ +LV I IP E V
Sbjct: 2 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVV 46
>gi|170288283|ref|YP_001738521.1| NusG antitermination factor [Thermotoga sp. RQ2]
gi|170175786|gb|ACB08838.1| NusG antitermination factor [Thermotoga sp. RQ2]
Length = 353
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--- 110
R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+
Sbjct: 225 KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKDREMRPILRLAGLE 284
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E + + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV L
Sbjct: 285 EYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVL 344
Query: 169 AYNQVEKI 176
++VEKI
Sbjct: 345 HVSEVEKI 352
Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV 45
M +WYIV S E+K E+I ++ +G+ +LV I IP E V
Sbjct: 1 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVV 45
>gi|269115174|ref|YP_003302937.1| transcription antitermination protein [Mycoplasma hominis]
gi|110810384|gb|AAZ52671.2| transcription antitermination protein [Mycoplasma hominis ATCC
23114]
gi|268322799|emb|CAX37534.1| Transcription antitermination protein [Mycoplasma hominis ATCC
23114]
Length = 195
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER----- 58
+WY++ S E+ +ES+ +++ +D +I + E +S ++ K
Sbjct: 9 KWYMISTVSGKEENVIESLKNKIAAQRMDEYFKDIRMFKEPHLSNKELEKKQRNEEFTVK 68
Query: 59 --RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAA 113
+ GY+ + MTD ++ +++T V G +G+ P+ ++D + + ++++
Sbjct: 69 FVNMYKGYIFLNMAMTDDTWYLVRNTQYVTGLIGSSGNKTKPTQISDKKFQLMIDKEAML 128
Query: 114 VQRPV---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ + F+ G V +S G F G + ++ + V + FGR P E Y
Sbjct: 129 LAKFKAGDIETAFKEGALVKISSGIFKDEVGEIIKNNDITQKAFVNIEQFGRKVPTEFDY 188
Query: 171 NQVE 174
+E
Sbjct: 189 ADLE 192
>gi|188996251|ref|YP_001930502.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931318|gb|ACD65948.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
Length = 265
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
R ++ E + FPGY+LIKA ++D + +K TP +IGF+ G P P+ ++++ +
Sbjct: 137 ENRTEARIVLENKIFPGYILIKAKLSDDLIDLVKKTPFLIGFVSAGGKPVPLNENDVMKV 196
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ Q++ + + + G+ V V +GPF +F G V+ V +K ++ + IFGR TPV
Sbjct: 197 LGQIQKGTPKAK-KLLYTKGDIVRVIEGPFMNFTGTVEEVFPDKEKLIALITIFGRATPV 255
Query: 167 ELAYNQVEKI 176
EL ++QVEKI
Sbjct: 256 ELEFSQVEKI 265
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV 54
+WY + SN E +A E+ L + L+HLV E+ +P+E V ++ +G++
Sbjct: 25 EKKWYALYTQSNLEIRAKENFVKNLKLNNLEHLVDEVIVPAEEKVVLKSQGKER 78
>gi|193216502|ref|YP_001999744.1| transcription antitermination protein NusG [Mycoplasma arthritidis
158L3-1]
gi|193001825|gb|ACF07040.1| transcription antitermination protein [Mycoplasma arthritidis
158L3-1]
Length = 197
Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-------ERVVSVRKGRKVNS 56
+WY++ S E VES+ ++S +D EI I E +
Sbjct: 11 KWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKVK 70
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAA 113
+ GY+ I +MTD+ ++ +++T V G +G+ G P+P++ E ++ + A
Sbjct: 71 YLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIAL 130
Query: 114 VQRPV---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
++ F+ G V ++ G F G + ++ + V + +GR P E+ +
Sbjct: 131 AEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQYGRKVPTEIDH 190
Query: 171 NQVE 174
+E
Sbjct: 191 ADLE 194
>gi|225849560|ref|YP_002729725.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643839|gb|ACN98889.1| transcription termination/antitermination factor NusG
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 260
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 38 ITIPSERV--VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP 95
I P +++ + ++ E + FPGY+LIKA +TD + +K TP +IGF+ G P
Sbjct: 121 IFKPGQKISCKENKTEARIVLENKIFPGYILIKAKLTDDLIDLVKKTPYLIGFVSAGGVP 180
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
P+ + ++ +++Q++ + V + F G+ V V +GPF +F G+V V +K ++
Sbjct: 181 VPLDEKDVAKVISQIQKGTPK-VRKLLFAKGDMVRVIEGPFMNFTGVVDEVFPDKEKLIA 239
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
+ IFGR TPVEL ++QVEKI
Sbjct: 240 LITIFGRATPVELEFSQVEKI 260
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV 54
+WY + SN E KA E+ L + LD+LV E+ +P+E V ++ +G++
Sbjct: 20 EKKWYALYTQSNLEIKAKENFLKNLKLNNLDYLVDEVIVPAEEKVVIKAQGKEK 73
>gi|46446233|ref|YP_007598.1| transcription antitermination protein NusG [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399874|emb|CAF23323.1| probable transcription antitermination factor NusG [Candidatus
Protochlamydia amoebophila UWE25]
Length = 124
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+PGY+LIK ++D+ + +K+T VI FLG G+ P+P+TD E+ I+ +E ++
Sbjct: 1 MWPGYLLIKMNLSDESWQYVKNTNGVIDFLG-GDKPTPLTDFEVGEILKDLEDKKRKITQ 59
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
FEVG+RV ++DG F +F G V V +K R+ V V IFGR T V +L + QVE+I
Sbjct: 60 KHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 117
>gi|47570852|ref|ZP_00241389.1| transcription termination/antitermination factor nusG [Bacillus
cereus G9241]
gi|47552480|gb|EAL10994.1| transcription termination/antitermination factor nusG [Bacillus
cereus G9241]
Length = 140
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
E K ++ R+ G+ + + +P E V ++ G++ +R+ FPGYVL++ +MTD
Sbjct: 1 ENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDD 60
Query: 75 VYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
++ +++TP V GF+ G+G PSP+ + E+ IM + + V FE+ E V V
Sbjct: 61 SWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNEVVDFDFELHETVRV 118
Query: 132 SDGPFASFNGIVKNVDEEKSRV 153
++GPFA + G ++ +D EK +V
Sbjct: 119 NEGPFADYTGAIEEIDVEKKKV 140
>gi|313678177|ref|YP_004055917.1| transcription antitermination protein NusG [Mycoplasma bovis PG45]
gi|312950368|gb|ADR24963.1| putative transcription antitermination protein NusG [Mycoplasma
bovis PG45]
Length = 199
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-------ITIPSERVVSVRKGRKV--- 54
WY++ S E K VES+ R+ ++ + I + V++ ++ K
Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEDCFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65
Query: 55 ----NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ GY+ I MTDK + +++T V G +G+ G P+PVT EI+
Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125
Query: 108 NQVEAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ + ++ S F VGE V + +GPF G V +E +V VEV FG+
Sbjct: 126 EKEKQLIEDFNSGKNIDKFTVGEIVEIIEGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185
Query: 165 PVELAYNQVE 174
P + Y+ VE
Sbjct: 186 PTDFDYSVVE 195
>gi|168700805|ref|ZP_02733082.1| transcription antitermination protein NusG [Gemmata obscuriglobus
UQM 2246]
Length = 223
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG----------- 51
+WY ++V S E +I +++ GL+ + +I +P E+V+ +
Sbjct: 24 KKWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTGEYN 83
Query: 52 ---RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------PSPVTDSE 102
RKV + + F GY+ + D++ + I++T V FL P P++D+E
Sbjct: 84 TVERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMSDAE 143
Query: 103 IEHIMN-QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV-----DEEKSRVHVE 156
++ ++ +V V FE G+RV + +G F G VK+V + +V V
Sbjct: 144 VKQMLGEKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKVIVT 203
Query: 157 VVIFGRVTPVELAYNQVEK 175
V +GR VEL Y QV K
Sbjct: 204 VTFWGRPLDVELEYWQVTK 222
>gi|148377312|ref|YP_001256188.1| transcription antitermination protein NusG [Mycoplasma agalactiae
PG2]
gi|148291358|emb|CAL58741.1| Transcription antitermination protein (NusG) [Mycoplasma agalactiae
PG2]
Length = 199
Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-------ITIPSERVVSVRKGRKV--- 54
WY++ S E K VES+ R+ ++ + I + V++ ++ K
Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65
Query: 55 ----NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ GY+ I MTDK + +++T V G +G+ G P+PVT EI+
Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125
Query: 108 NQVEAAVQRP---VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ + ++ F VGE V + DGPF G V +E +V VEV FG+
Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185
Query: 165 PVELAYNQVE 174
P + Y+ VE
Sbjct: 186 PTDFDYSVVE 195
>gi|291319980|ref|YP_003515238.1| transcription antitermination protein NusG [Mycoplasma agalactiae]
gi|290752309|emb|CBH40280.1| Transcription antitermination protein (NusG) [Mycoplasma
agalactiae]
Length = 199
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-------ITIPSERVVSVRKGRKV--- 54
WY++ S E K VES+ R+ ++ + I + V++ ++ K
Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65
Query: 55 ----NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIM 107
+ GY+ I MTDK + +++T V G +G+ G P+PVT EI+
Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125
Query: 108 NQVEAAVQRPVSSV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ + ++ S F VGE V + DGPF G V +E +V VEV FG+
Sbjct: 126 EKEKQLIEDFNSGKIIDKFTVGEIVEIIDGPFKGTLGKVLEANESIHKVTVEVEHFGKKV 185
Query: 165 PVELAYNQVE 174
P + Y+ VE
Sbjct: 186 PTDFDYSVVE 195
>gi|308190287|ref|YP_003923218.1| transcription antitermination factor [Mycoplasma fermentans JER]
gi|307625029|gb|ADN69334.1| transcription antitermination factor [Mycoplasma fermentans JER]
Length = 193
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 20/188 (10%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-------------ERVVSVRKGRK 53
++ S E K VE++ R+ ++ P + + + G +
Sbjct: 1 MISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKNGEE 60
Query: 54 -VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQ 109
+ GY+ I MTD+ + +++T V G +G+ G P+PV+ +I+ +
Sbjct: 61 YKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKSFKK 120
Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++ + V+ F++GE V + DGPF G V E +V VE+ G+ TP
Sbjct: 121 EIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKKTPA 180
Query: 167 ELAYNQVE 174
+ Y +++
Sbjct: 181 DFEYKEIK 188
>gi|309799005|ref|ZP_07693261.1| transcription antitermination protein NusG [Streptococcus infantis
SK1302]
gi|308117355|gb|EFO54775.1| transcription antitermination protein NusG [Streptococcus infantis
SK1302]
Length = 129
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 49 RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEH 105
+ G+K E FPGYVL++ VMTD+ + +++TP V GF+ G P+P+ + EI
Sbjct: 3 KNGKKKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRD 62
Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
I+ + VQ + EVG+ V + DG FA + G + +D ++V + + +FG T
Sbjct: 63 ILVSMGQTVQEF--DIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTV 118
Query: 166 VELAYNQVEKI 176
E+ NQ+ ++
Sbjct: 119 AEVNLNQIAEL 129
>gi|159162766|pdb|1NZ8|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
N-Terminal (Ngn) Domain From Thermus Thermophilus
Length = 119
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRF 60
+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+ G+K ++
Sbjct: 1 SIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKL 60
Query: 61 FPGYVLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
FPGY+ I+ + D + + ++ TP + GF+G G P P++ E+ HI+
Sbjct: 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILE 113
>gi|289548403|ref|YP_003473391.1| NusG antitermination factor [Thermocrinis albus DSM 14484]
gi|289182020|gb|ADC89264.1| NusG antitermination factor [Thermocrinis albus DSM 14484]
Length = 242
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+ K+ E + FPGY+LIKA M D + I+ TP + + TG +P+ + E+E I
Sbjct: 115 ENKTEAKIILESKMFPGYLLIKADMDDSLLRAIEKTPHIYRPVLTGGRVAPLDEREVERI 174
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ V+ V+ S V FE G++V V +GPF +F G V V E+ +V V + IFGR+TPV
Sbjct: 175 IAFVKKGVRP--SKVLFEKGDQVRVIEGPFMNFTGTVDEVHPEREKVVVLISIFGRLTPV 232
Query: 167 ELAYNQVEKI 176
EL ++Q+EK+
Sbjct: 233 ELDFSQIEKL 242
Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKV 54
RWY +QV + E A E++ L GL V E+ +P+E V ++ G++
Sbjct: 6 RWYALQVEAGKEATARENLLKVLEIEGLQDKVQEVVVPAEEKVVIKTMGKEK 57
>gi|304316482|ref|YP_003851627.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777984|gb|ADL68543.1| NusG antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 187
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ + E K I S+ + IP ++ + ++V + FPG
Sbjct: 6 KWYVIYTRTGDELKVKRLIELLFSKLN--KKPIRVLIPKRAIIERKGKKRVEKIKFLFPG 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK M ++Y+ I P + FL P+ V D EI I++ V + S
Sbjct: 64 YVFIKTNMCFEIYYEISKLPHFLKFLKDEMEPAEVRDDEIRIILSLVGDS-DIVGFSTGI 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G +V + DGP F G+++ +D+ K RV V + + G V+L + VEKI
Sbjct: 123 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEKI 175
>gi|62257572|gb|AAX77724.1| unknown protein [synthetic construct]
Length = 149
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVFF 123
LI+A ++ ++ +K P+V+ +G+ P P++ +E++ I++ VE + P +
Sbjct: 27 LIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKSY 86
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 87 HVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 138
>gi|313639747|gb|EFS04501.1| transcription antitermination protein NusG [Listeria seeligeri FSL
S4-171]
Length = 111
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ VMTD ++ +++TP V GF+G+ P+P+ E + I+ + +R FE
Sbjct: 2 EIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKRA--EADFE 59
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI
Sbjct: 60 IGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 111
>gi|157363336|ref|YP_001470103.1| NusG antitermination factor [Thermotoga lettingae TMO]
gi|157313940|gb|ABV33039.1| NusG antitermination factor [Thermotoga lettingae TMO]
Length = 354
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV--- 110
+RR FPGYV ++ +M D+ + ++ P +I F+ +G P + E I+
Sbjct: 226 KTHKRRLFPGYVFVEMMMNDETWQFARNVPSIIDFVSSGGQPLEMKPREARVILRLAGLE 285
Query: 111 --EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E ++ + F +G+ V ++ GPF F G+VK +D EK + V V IFGR TPV +
Sbjct: 286 TYEEKMKPIKVELDFHIGDVVKITSGPFEDFAGVVKEIDAEKQELRVAVTIFGRETPVTV 345
Query: 169 AYNQVEKI 176
++VE+I
Sbjct: 346 KISEVERI 353
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV 45
M +W+I++ + E+ A E++ ++ +G + I +P E +
Sbjct: 1 MKKKWFILRTMAGFEQTAKENLEAKIRSTGFERYFGRILVPEETI 45
>gi|325294360|ref|YP_004280874.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064808|gb|ADY72815.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 245
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
CEKK + ++ + +I P +V K+ + +PGY+ IKA +
Sbjct: 94 CEKK------KCIPDKPIEKIGQKIKCPENKVE-----AKIELRDKLYPGYIFIKADLDK 142
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
V TI+ P+V+GF+ G P V ++EI+ + +++ V + + + F++G++V + +
Sbjct: 143 NVQSTIRRVPRVLGFVSAGGKPVVVPEAEIQAMRERLKKGVPK-IKKLKFDIGDKVKIKE 201
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GPF F G + +D E+ ++ V V IF R TPVEL ++Q+EKI
Sbjct: 202 GPFIGFEGSISEIDPEREKIIVLVNIFDRQTPVELEFDQIEKI 244
Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKV 54
+WY + V S E + +I L GL++ V EI IP E+V+ G++
Sbjct: 3 EKKWYSLHVQSGFENRVKANILKALKEEGLENKVEEIFIPAVEKVIFKVAGKEK 56
>gi|169830052|ref|YP_001700210.1| transcription antitermination protein [Lysinibacillus sphaericus
C3-41]
gi|168994540|gb|ACA42080.1| Transcription antitermination protein [Lysinibacillus sphaericus
C3-41]
Length = 114
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV 114
R+ FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E + ++ Q+ +
Sbjct: 3 RKVFPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQM--GM 60
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ V +GE V V +GPFA F G V+ +D EK ++ V V +FGR T
Sbjct: 61 TDKIVEVDISIGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVSVDMFGRET 110
>gi|323704399|ref|ZP_08115978.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323536465|gb|EGB26237.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 204
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ + E K I + L + IP ++ + +V + FPG
Sbjct: 23 KWYVIYTRTGDELKVKRLIELLFCK--LKRKSIRVLIPKRAIIERKGKNRVEKIKSLFPG 80
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV IK M+ ++Y+ IK P+ + FL P+ V + EI+ I++ V + S
Sbjct: 81 YVFIKTCMSYELYNDIKRLPRFLKFLKDEAEPAEVREEEIKIILSLVGDS-DIVGFSTGI 139
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++G +V + DGP F G+++ +D+ K RV V + + G V+L + VE++
Sbjct: 140 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEEL 192
>gi|85860190|ref|YP_462392.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
gi|85723281|gb|ABC78224.1| transcription antitermination protein [Syntrophus aciditrophicus
SB]
Length = 167
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 13/175 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V S E K + + + +P V S RK R+ FPGY
Sbjct: 3 WYAVHTRSRHEDKVFTGLVQKSITT---------FLPKIEVWSKRKDRRKRIMTPLFPGY 53
Query: 65 VLIKA-VMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
+ + + ++ + T V+ LG TG P PV D +I+ I V++ V+
Sbjct: 54 LFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVEVQNLQY 113
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VGE + DGPF G V D +K V + + R ++L +Q+EKI
Sbjct: 114 P-HVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167
>gi|325833223|ref|ZP_08165729.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|325485605|gb|EGC88073.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 212
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + E I + D ++ E +P V +G+ FPGY
Sbjct: 44 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 99
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+++ D++ ++ P L P+ E+ I E + S
Sbjct: 100 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 159
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ V GP G ++ ++ K ++E+ +FGR ++ V K
Sbjct: 160 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 210
>gi|195952631|ref|YP_002120921.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1]
gi|195932243|gb|ACG56943.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1]
Length = 245
Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 36 TEITIPSERVVSV--RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
EI+ P +++ + K+ + + FPGY+L+KA M D++ I+ P V + G
Sbjct: 105 GEISKPGQKITCKDNKTEAKIVLDNKMFPGYILLKAHMDDRLLRAIEKAPHVYKPVLVGG 164
Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+P+ + E+ I+ + + FE GE+V + +GPF SF G ++ V+ E+ ++
Sbjct: 165 KIAPLKEEEVNKILAHAQRGFK--TKKAVFEKGEQVRIIEGPFMSFTGTIEEVNLEREKL 222
Query: 154 HVEVVIFGRVTPVELAYNQVEKI 176
+V + IFGR+TPVEL ++QVEKI
Sbjct: 223 NVLISIFGRLTPVELDFSQVEKI 245
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKV 54
MT +WY +QV + E A ES+ + ++ LV +I +P+E V ++ G++
Sbjct: 1 MTDMKWYALQVEAGKETTAKESLMKVIELDKINDLVEDIVLPAEEKVVIKALGKEK 56
>gi|326392210|ref|ZP_08213671.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325991749|gb|EGD50280.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 102
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V V +
Sbjct: 1 MVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDLNVKDT 54
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V GPF +F G+V+ + E+ + V + +FGR TPVE Q+++I
Sbjct: 55 VRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQRI 102
>gi|288818176|ref|YP_003432524.1| transcription antitermination protein [Hydrogenobacter thermophilus
TK-6]
gi|288787576|dbj|BAI69323.1| transcription antitermination protein [Hydrogenobacter thermophilus
TK-6]
gi|308751777|gb|ADO45260.1| NusG antitermination factor [Hydrogenobacter thermophilus TK-6]
Length = 241
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+ K+ E + FPGY+LIKA M D + I+ TP V + G P+ + E+E +
Sbjct: 114 ENKVEAKIILESKMFPGYLLIKAEMNDALLRAIEKTPHVYKPVLVGGRVVPIDEKEVERV 173
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
++ V+ V+ V FE G++V V +GPF +F G V+ V E+ ++ V + IFGR+TPV
Sbjct: 174 ISFVKKGVRP--VKVLFEKGDQVRVIEGPFMNFTGTVEEVHPEREKIVVLISIFGRLTPV 231
Query: 167 ELAYNQVEKI 176
EL ++QVEK+
Sbjct: 232 ELDFSQVEKL 241
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV 54
+WY +QV + E A E++ + GL V ++ +P+E V +R +G++
Sbjct: 5 KWYALQVEAGKEATARENLLKVIELEGLQEYVEDVVVPAEEKVVIRTQGKEK 56
>gi|23336710|ref|ZP_00121908.1| COG0250: Transcription antiterminator [Bifidobacterium longum
DJO10A]
Length = 128
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 12/127 (9%)
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----------- 110
PGYVLI+ + +++T V GF+G ++P+P++ E+ +M +
Sbjct: 1 PGYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGD 60
Query: 111 -EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
AA ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL
Sbjct: 61 KPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELG 120
Query: 170 YNQVEKI 176
++QV+K+
Sbjct: 121 FHQVQKL 127
>gi|149198910|ref|ZP_01875951.1| transcription antitermination protein NusG [Lentisphaera araneosa
HTCC2155]
gi|149137905|gb|EDM26317.1| transcription antitermination protein NusG [Lentisphaera araneosa
HTCC2155]
Length = 150
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)
Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
M +WY +Q S E KA + + R+ + + V E+ +P+E+V +VR+G+K+ R
Sbjct: 1 MEKLGQWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNR 60
Query: 59 RFFPGYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+F+PGY+ + + D+ V+H +K+T +I FLG G+ P P++D EI+ +
Sbjct: 61 KFYPGYLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG-GDKPVPLSDDEIQIL 114
>gi|83950151|ref|ZP_00958884.1| transcriptional antitermination protein, putative [Roseovarius
nubinhibens ISM]
gi|83838050|gb|EAP77346.1| transcriptional antitermination protein, putative [Roseovarius
nubinhibens ISM]
Length = 169
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W++ QV NC ++ L + +P E R G+ V + R FP
Sbjct: 7 KNWFLAQVKPNCAN---------IADKNLKRQGFKTFLPLEEETRQRNGKFVTAMRPLFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ + + T+ T + + G P+ V + ++M + + A + + +
Sbjct: 58 GYIFVAFDAARGFWRTVNSTYGITRLVSFGNEPTAVPLDLVSYLMQRCD-AEGKLLPATH 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V ++ GPFA+F V+ + ++ RV V + I G T V + +Q+ +
Sbjct: 117 LSSGDKVTLTTGPFANFVAEVEKIAPDR-RVWVLMDIMGGQTRVAVGADQLRAV 169
>gi|258517294|ref|YP_003193516.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
gi|257780999|gb|ACV64893.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 164
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ + E E + R+ + +P +V R+G ER FP
Sbjct: 1 MHWYVIHCLTGHE----EDVRSRVKEKD----IARAVVPRRLMVERRQGGWQYVERVVFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++A MT Y+ +++ P VI LGT P P+ +E+ + +S V
Sbjct: 53 GYVFVQAHMTPAAYYAMRNLPGVIRVLGT-SRPVPLMGNEVTLFLKLCRDGDPLGLSEV- 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G V V GP G + +D + R V + + G VELA + ++K
Sbjct: 111 FVKGGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKK 163
>gi|149916011|ref|ZP_01904534.1| NusG antitermination factor [Roseobacter sp. AzwK-3b]
gi|149810085|gb|EDM69933.1| NusG antitermination factor [Roseobacter sp. AzwK-3b]
Length = 177
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 11/170 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ N K ++ L + +P + V R G+ + + FPG
Sbjct: 8 RWYLVQFKPNSHK---------IAARNLQRQSFQTFLPMQDVTRRRAGKFHTAPQPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ + + I T V + P PV D+ + ++ + + + F
Sbjct: 59 YMFVSLDTIRGPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKLLPPET-F 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
GE+V + GPFASF V+ + ++ RV V + G+ T +++ + +
Sbjct: 118 SPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQVDADIL 166
>gi|257791627|ref|YP_003182233.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|257475524|gb|ACV55844.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
Length = 170
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + E I + D ++ E +P V +G+ FPGY
Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+++ D++ ++ P L P+ E+ I E + S
Sbjct: 58 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ V GP G ++ ++ K ++E+ +FGR ++ V K
Sbjct: 118 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168
>gi|295105743|emb|CBL03286.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 180
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 3/172 (1%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDH---LVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++QV S E KA E I + ++ E +P +V G+ R F
Sbjct: 2 WYVIQVLSGQEDKACELINLHAAGQRSKDNRPVLKECFVPRYQVERKFHGQYRTLTRNLF 61
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV+ D++ + P LG+ ++ P+ SE I + S
Sbjct: 62 PGYVIAVTNRVDELNDRLVKIPTFTRMLGSEKSFIPLDRSEKAFINAFTTEKHRTISLSK 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G++V V++GP + G + V+ K VEV +FGR VE+ V
Sbjct: 122 AVYEGDKVVVTEGPMINREGWITEVNRRKGTARVEVSMFGRTINVEIGLAIV 173
>gi|218901298|ref|YP_002449132.1| transcription antitermination protein NusG [Bacillus cereus
AH820]
gi|218535625|gb|ACK88023.1| transcription antitermination protein NusG [Bacillus cereus
AH820]
Length = 96
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLXKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
FPGYVL++ +MTD ++ +++TP V GF
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGF 88
>gi|229003111|ref|ZP_04160959.1| Transcription antitermination protein nusG [Bacillus mycoides
Rock1-4]
gi|228758139|gb|EEM07336.1| Transcription antitermination protein nusG [Bacillus mycoides
Rock1-4]
Length = 107
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 71 MTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
MTD ++ +++TP V GF+G+ PSP+ + E+ IM + + V FE+ E
Sbjct: 1 MTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHM--GMDNEVVDFDFELHE 58
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 59 TVRVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 107
>gi|169831854|ref|YP_001717836.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
gi|169638698|gb|ACA60204.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 173
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +W V E A + + E+ +P V R K +
Sbjct: 1 MALQWCAVNTKPKKEDFAARQLEAK---------GLEVFLPRISVTRKRGASKFSLWEPL 51
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
FPGY+ +K + + TP V L G+ P PV D I I +V + P
Sbjct: 52 FPGYLFVKLLPEPVQVQRVNWTPGVRRLLCAGDTPVPVPDEAIALIRQRVGPGGRLTPKP 111
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G RV V GPFA G+V+ + RV V + + R T VE+ ++++
Sbjct: 112 QAEFPAGSRVAVRHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDRL 168
>gi|331035493|gb|AEC53050.1| NusG antitermination factor [Synechococcus phage S-CRM01]
Length = 193
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
WY VQV + CEKKA+ + R S G D + ++ +P VV+V KG+K +++
Sbjct: 5 KDWYCVQVAAGCEKKAMADLKARKSVLG-DIFIQDVEVPQHTVVTVDDKGKKKSTKTNIL 63
Query: 62 PGYVLIKA---------------VMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEH 105
PGY+L++ V + I+ T V+GF G + P + SE+
Sbjct: 64 PGYILVQVKKEKIETEEEGVFVEVFPASSHDIIRSTFNVLGFAGPDKKKPRVMPASEVRT 123
Query: 106 IMNQVEAAVQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
I +QV+ A + +++ ++VG+++ V +GPF N IV ++ + +V EV +FGR+
Sbjct: 124 IFSQVDDAYKETKTNLLADYKVGDKLTVINGPFEGKNIIVDSIRGD--KVTAEVDMFGRI 181
Query: 164 TPVELAYNQVEK 175
T VE + Q+ K
Sbjct: 182 TTVEFSKEQLLK 193
>gi|146282124|ref|YP_001172277.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501]
gi|145570329|gb|ABP79435.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501]
Length = 169
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY++Q E +A E + + E P + + R G+ + F
Sbjct: 6 TARWYLIQTKPRQEARAEEHLLRQH---------FECYRPLKASAATRSGQGAKAGEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ T ++ I+ T V + G P+PV D IE + ++ A +
Sbjct: 57 PGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRL--AQDERAPAA 114
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
F+ GERV VS G F+ I + D E+ V + + + R V +
Sbjct: 115 NFKPGERVQVSGGSFSDIEAIFVSSDGEERSV-ILLNLLQREQKVRV 160
>gi|239628060|ref|ZP_04671091.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518206|gb|EEQ58072.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
Length = 186
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 5/173 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY VQV + E+ ++ + ++ E IP + +G + FPG
Sbjct: 3 RWYAVQVRTGREEAVLQLSKKMID----GSVLKECFIPYYERMKRYQGEWHKEQYILFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ + D+++ +K P + LG G P+ + E + I+ ++ + S +
Sbjct: 59 YIFLVTEQVDELFWELKKVPGLTKILGDGMEFVPIKEEE-KVILQKMGGSDHIAEMSKGY 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G+ V V GP G +K +D K +E+ +FGR T V L V K+
Sbjct: 118 VIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMKL 170
>gi|330974585|gb|EGH74651.1| transcriptional activator RfaH [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 170
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + + E P + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGTRVQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D IE I ++ P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----ATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ + I + D R + + + R V L + + +I
Sbjct: 115 AQGDTVLITHASWGDIEAIFLSKDG-TQRAVILLNMLQRQQKVVLPISSLSRI 166
>gi|317487905|ref|ZP_07946497.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|316913031|gb|EFV34548.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
Length = 170
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + E I + ++ E +P V +G+ FPGY
Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----GDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+++ D++ ++ P L P+ E+ I E + S
Sbjct: 58 LIVVTDRVDELESQLRRVPAFARVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ V GP ++ ++ K ++E+ +FGR ++ V K
Sbjct: 118 EGDRIIVLKGPLVGRESWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168
>gi|307265355|ref|ZP_07546912.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|306919639|gb|EFN49856.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
Length = 180
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S E K + I + + ++ IP +++ KG+ V + FP
Sbjct: 2 KKWYVIFTRSGYENKVKDIIENCFKQEEV-----KLLIPKRKIIERVKGQPVEKIKLLFP 56
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I+ + + +S
Sbjct: 57 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILALTKNSDLIDLSKGI 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V + I G + V+LA +E +
Sbjct: 117 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIENV 169
>gi|257791667|ref|YP_003182273.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|317487867|ref|ZP_07946459.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325830645|ref|ZP_08164066.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|257475564|gb|ACV55884.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|316912993|gb|EFV34510.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325487391|gb|EGC89833.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 170
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ QV + E +E + S ++ +P V+ +G +R FPGY
Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPSVMED----CFMPEYEVMWKIRGEWRLVKRLLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ + + + P I LG EN P+T E + ++ ++ S +
Sbjct: 58 LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMD-GNHTVRMSEGY 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+++ V+ GP F G ++ +D K R +++V +FGR P + V K
Sbjct: 117 ISGDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRK 168
>gi|66046455|ref|YP_236296.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
B728a]
gi|63257162|gb|AAY38258.1| Transcriptional activator RfaH [Pseudomonas syringae pv. syringae
B728a]
Length = 170
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + + E P + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGTRVQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D IE I ++ P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----ATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ + I + D R + + + R V L + + +I
Sbjct: 115 AQGDAVLITHASWGDVEAIFLSKDG-TQRAVILLNMLQRQQKVVLPISSLSRI 166
>gi|226941728|ref|YP_002796802.1| RfaH [Laribacter hongkongensis HLHK9]
gi|226716655|gb|ACO75793.1| RfaH [Laribacter hongkongensis HLHK9]
Length = 172
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V E+ A++++ + + +P +R+GR V SE FP
Sbjct: 9 MHWYLVHTKPRQEQCALQNLQQQ---------GYQCYLPMLATEKLRQGRLVVSEEALFP 59
Query: 63 GYVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ I+ + +DK + I+ T V + G P+ + D IE + R
Sbjct: 60 RYLFIRLGLGQSDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGH---DAARANPE 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F GERV ++DGPFA GI + D E SRV V + R +A + K+V
Sbjct: 117 PLFRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTRPVVARVAPGSLRKVV 172
>gi|330943991|gb|EGH46181.1| transcriptional activator RfaH [Pseudomonas syringae pv. pisi str.
1704B]
Length = 170
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + + E P + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGTRVQTGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D IE I ++ P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----ATPAPKAQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ + I + D R + + + R V L + + +I
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSEDG-AQRAVILLNMLQRQQKVVLPISSLSRI 166
>gi|254724237|ref|ZP_05186022.1| transcription antitermination protein NusG [Bacillus anthracis
str. A1055]
Length = 96
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+
Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
FPGYVL++ +MTD ++ +++TP V G
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGV 88
>gi|326391515|ref|ZP_08213048.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325992444|gb|EGD50903.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 180
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S E K + I + + ++ IP +++ KG+ V R FP
Sbjct: 2 KKWYVIFTRSGYENKVRDIIESCFKQEEV-----KLLIPKRKIIEREKGQPVERIRLLFP 56
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + A M+D +Y+ + D K FL G+ P+ V + E++ I++ + + +S
Sbjct: 57 GYVFVNAEMSDDLYYKMSDVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V + I G + V+LA +E +
Sbjct: 117 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIENV 169
>gi|207108836|ref|ZP_03242998.1| transcription antitermination protein NusG [Helicobacter pylori
HPKX_438_CA4C1]
Length = 110
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135
+H I+ P+V F+G + P+P+++++I HI+ ++ P +FFE GE V V +GP
Sbjct: 2 WHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAA-PKPKIFFEQGEVVRVVEGP 60
Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FA+F V+ D E ++ + V IFGR TP+E+ ++QVEK+
Sbjct: 61 FANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKL 101
>gi|266620791|ref|ZP_06113726.1| putative transcription antiterminator [Clostridium hathewayi DSM
13479]
gi|288867577|gb|EFC99875.1| putative transcription antiterminator [Clostridium hathewayi DSM
13479]
Length = 168
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV + E+ + R ++ IP + G+ ++ FPGY
Sbjct: 2 WYVIQVRTGLEESIRIQCEKLIDRHAME----RCFIPYCEKMKCYYGKWHKEKQILFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + + ++ + + LGTG P+T E E ++ Q+ Q S
Sbjct: 58 LFVVSQDVEALFLELNRIIGLTKLLGTGNMIVPLTSEE-ESVLKQISNDDQIVTMSKGLI 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V +V + +GP G + +D K R +E+ +FGR VEL +EK
Sbjct: 117 VNNQVIILEGPLKGREGYICKIDRHKRRARLELHMFGRKQNVELGLEILEK 167
>gi|257792184|ref|YP_003182790.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|257476081|gb|ACV56401.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
Length = 172
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ EK ++ I + + L+ E IP V +G PGY
Sbjct: 4 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + K+ ++ PK LG + +P+ D E+ I + + S
Sbjct: 60 IFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVM 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + + +GP + G++K +D K ++E+ I GRV V++ V K
Sbjct: 120 EGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170
>gi|301058101|ref|ZP_07199153.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
gi|300447733|gb|EFK11446.1| transcription termination/antitermination factor NusG [delta
proteobacterium NaphS2]
Length = 179
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+ + S E+K GL E +P +V+S RK R+ PG
Sbjct: 15 RWWALHTRSRFEQKVYT---------GLCGKSLEALLPRIQVMSRRKDRRKKILVPLLPG 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +++ + + YH I T V+ + P P + EI +M ++ + + +
Sbjct: 66 YVFVRSTLAPEEYHRIIQTVGVVRMVSFRGTPIPADEKEIASLM-IMDGTDRTVQNRSYM 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+RV + +GP G ++ RV + + + R VE+ +E+I
Sbjct: 125 REGDRVMIMEGPLKGLEGFYIRHKDKTERVVISIELLQRSLEVEIEDWSLERI 177
>gi|289678572|ref|ZP_06499462.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
FF5]
Length = 170
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 15/173 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + + E P + + G K + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGAKAQAGEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D IE I ++ P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----ATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ + I + D R + + + R V L + + +I
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSEDG-AQRAVILLNMLQRQQKVVLPISSLSRI 166
>gi|13477026|ref|NP_108596.1| transcription antitermination factor nusG [Mesorhizobium loti
MAFF303099]
gi|14027789|dbj|BAB54382.1| transcription antitermination factor; NusG [Mesorhizobium loti
MAFF303099]
Length = 182
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 16/181 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-----S 56
RWY+++V E +A ++ L + ++ ++ + R+GR+ +
Sbjct: 11 EARWYVLRV----EDRADIAVDKLLGEANVERVMLHT-----ECEAKRRGRRKHQSLEPV 61
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
FPGY+ +K V + ++ V+G +G + PSPV++ EI ++E +
Sbjct: 62 RVPSFPGYIFVKVVSCAATWAGLRTVSGVLGPIGGCDGPSPVSEQEILKFQARIENDPEA 121
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + + G++V + GPFA F +V + +K +VHVEV IFGR TP+ A +V K
Sbjct: 122 IAVLTNALKAGDKVSIDSGPFAGFEAVVL-MLGDKHKVHVEVDIFGRKTPIGFALAEVTK 180
Query: 176 I 176
+
Sbjct: 181 L 181
>gi|304373041|ref|YP_003856250.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1]
gi|304309232|gb|ADM21712.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1]
gi|330723344|gb|AEC45714.1| transcription antitermination protein NusG [Mycoplasma hyorhinis
MCLD]
Length = 198
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-------ERVVSVRKGRKVNS 56
+WY++ SN E A+E + R+ GL+ EI E ++ + V
Sbjct: 5 KWYMISTISNKEDTAIELLKNRIKSEGLEQYFKEIKKFEITTISDKEYEKKLKGEKYVEK 64
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHI----MNQ 109
+ + GY+ I M D V+ +++T + G +G+ G P+PV++ +I + +
Sbjct: 65 KENLYKGYIFINMQMNDAVWFIVRNTQYITGLIGSSGKGTKPTPVSEKQIRKMEEKQREK 124
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ + + + F+VG V + GPF G + +VD + V++ + GR T
Sbjct: 125 LVEYAKFGIINSPFKVGTVVEIIQGPFIGEIGKISSVDLVNASSAVQLEVLGRKTET 181
>gi|330976250|gb|EGH76312.1| transcriptional activator RfaH [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 170
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
M+ RWY++Q E +A E + + E P + + G K
Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGAKAQ 50
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
+ FPGY+ I ++ I+ T V + G +P PV D IE I ++
Sbjct: 51 AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----A 106
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P F G+ V ++ + I + D R + + + R V L + + +
Sbjct: 107 TPAPKAQFTQGDAVLITHASWGDVEAIFLSEDG-AQRAVILLNMLQRQQKVVLPISSLSR 165
Query: 176 I 176
I
Sbjct: 166 I 166
>gi|160876145|ref|YP_001555461.1| transcriptional acivator RfaH [Shewanella baltica OS195]
gi|160861667|gb|ABX50201.1| transcriptional acivator RfaH [Shewanella baltica OS195]
gi|315268341|gb|ADT95194.1| transcriptional acivator RfaH [Shewanella baltica OS678]
Length = 168
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++GRK FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGRKQVCRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ + ++
Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEAL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R HV I G++ V + VE++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPEQSVERVC 167
>gi|317490110|ref|ZP_07948599.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325833656|ref|ZP_08166105.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|316910815|gb|EFV32435.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|325485580|gb|EGC88049.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 170
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ EK ++ I + + L+ E IP V +G PGY
Sbjct: 2 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + K+ ++ PK LG + +P+ D E+ I + + S
Sbjct: 58 IFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVM 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + + +GP + G++K +D K ++E+ I GRV V++ V K
Sbjct: 118 EGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 168
>gi|20807217|ref|NP_622388.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
gi|20515721|gb|AAM23992.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
Length = 171
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S CE+K + I E+ IP +++ KG + + FP
Sbjct: 2 KKWYVLFTKSGCEEKVGKIIKKIWENE------IEVLIPRRKIIERIKGEEREKIKLLFP 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV +K MT+ YH I K FL + P+ V + E+ I+N + VS
Sbjct: 56 GYVFVKTEMTEAKYHEITSVLKQGVFLKEDKMPASVKEEEMRVILNLTGDSDLIDVSR-G 114
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ G+RV + +GP + G ++ VD+ K R V + G V V+L VEKIV
Sbjct: 115 VKEGDRVKIIEGPLLGYEGFIQKVDKRKKRAKVIFKVAGEVKSVDLGLEIVEKIV 169
>gi|307544895|ref|YP_003897374.1| transcriptional antiterminator RfaH [Halomonas elongata DSM 2581]
gi|307216919|emb|CBV42189.1| K05785 transcriptional antiterminator RfaH [Halomonas elongata DSM
2581]
Length = 180
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY++Q S + L + EI P RV R+G+ V + FP
Sbjct: 16 PRWYVIQCKSG---------ESFRAVEHLGNQGYEIFHPVLRVQKKRRGKLVWAVEPLFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ I+ D + I+ T V+ + G + P PV D + + + + ++V
Sbjct: 67 YYLFIRLDRLDSNWRPIRSTRGVLKIVTFGLDTPVPVDDELVAS-LREHGSQEAGETATV 125
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+F GE+V +++GPF + E R V + + + +E++ +Q+++
Sbjct: 126 YFRAGEQVEITEGPFKDLQAVFATHKGE-ERAIVLLNMLHKRQRLEMSVSQLKR 178
>gi|330898232|gb|EGH29651.1| transcriptional activator RfaH [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 170
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
M+ RWY++Q E +A E + + E P + + G K
Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGAKAQ 50
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
+ FPGY+ I ++ I+ T V + G +P PV D IE I ++
Sbjct: 51 AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----A 106
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P F G+ V ++ + I + D R + + + R V L + + +
Sbjct: 107 TPAPKAQFTQGDAVLITHASWGDVEAIFLSEDG-AQRAVILLTMLQRQQKVVLPISSLSR 165
Query: 176 I 176
I
Sbjct: 166 I 166
>gi|99034374|ref|ZP_01314395.1| hypothetical protein Wendoof_01000801 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 235
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
+WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159
Query: 63 GYVLIKAVMTDKVYHTIKDTP---KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
GYV + + D+V + I + P KV GFL G P + D EI + N + A +
Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219
Query: 120 SVFFEVGERVCVSDG 134
+E GE+V ++DG
Sbjct: 220 GYGYEKGEKVKINDG 234
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WYI++V E ++I +S + E+ IP + V + + K E
Sbjct: 6 KWYIIKVDYGYE----QNIRELVSNAV---YFKEVFIPYQTVCNSKSDIKELCE------ 52
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI 103
V + + D+ + + TP G + ++D EI
Sbjct: 53 -VYVYMHLCDESKNILNQTPGFCS--GESGDFEMISDDEI 89
>gi|153001420|ref|YP_001367101.1| transcriptional acivator RfaH [Shewanella baltica OS185]
gi|217972648|ref|YP_002357399.1| transcriptional acivator RfaH [Shewanella baltica OS223]
gi|151366038|gb|ABS09038.1| transcriptional acivator RfaH [Shewanella baltica OS185]
gi|217497783|gb|ACK45976.1| transcriptional acivator RfaH [Shewanella baltica OS223]
Length = 168
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++GRK FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGRKQVCRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ + ++
Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKELTPSQTVLAEAL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R HV I G++ V + VE+I
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPQQSVERIC 167
>gi|328953460|ref|YP_004370794.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
gi|328453784|gb|AEB09613.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
Length = 190
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY+V + E + RL RSG + + I +PS R R++ F
Sbjct: 26 TASWYVVYTACHHEFRV----EQRLKRSGRETFLPWIAVPSRRC-----DRRLQINVPLF 76
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ +T VYH I P V L + V IE I + +
Sbjct: 77 PGYLFIREQLTPVVYHEIVRLPGVARILRCNGGYATVCPEVIESIRQSLASLRPCG-PHA 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F + G++V V +GP GI+K + K R+ + V +F R VEL + VE
Sbjct: 136 FVQRGKQVRVVEGPLRGIVGIIKELKHRKRRLVITVELFKRSMAVELDDDAVE 188
>gi|92114264|ref|YP_574192.1| transcription antitermination protein nusG [Chromohalobacter
salexigens DSM 3043]
gi|91797354|gb|ABE59493.1| transcription antitermination protein nusG [Chromohalobacter
salexigens DSM 3043]
Length = 182
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 11/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
PRWY+VQ + L + + P V R+ + V FP
Sbjct: 17 PRWYVVQCKGG---------ESFRAGEHLTNQGYRVFHPVLEVQKKRRNKLVWIAEPLFP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
Y+ I + I+ T V+ +G G+ P PV D+ IE + + S +
Sbjct: 68 HYLFIHLDRVASNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTSGNA 127
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+F GE V +++GPF + + + R V + + +EL + +
Sbjct: 128 YFRPGEIVEITEGPFQALQAVFDTQQGD-ERAIVLLNMLHHQQRLELPVGHLRR 180
>gi|327480363|gb|AEA83673.1| transcriptional activator RfaH [Pseudomonas stutzeri DSM 4166]
Length = 169
Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 12/167 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY++Q E +A E + + E P + + R + + F
Sbjct: 6 TARWYLIQTKPRQEARAEEHLLRQH---------FECYRPLKASAATRSAQGAKAGEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ T ++ I+ T V + G P+PV D IE + ++ A +
Sbjct: 57 PGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRL--AQDERAPAA 114
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
F+ GERV VS G F+ I + D E+ V + + + R V +
Sbjct: 115 NFKPGERVQVSGGSFSEIEAIFVSSDGEERSV-ILLNLLQREQKVRV 160
>gi|71734584|ref|YP_275310.1| transcriptional activator RfaH [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555137|gb|AAZ34348.1| transcriptional activator RfaH [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 170
Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 15/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++Q E +A E + + + P + V + +V ++ F
Sbjct: 7 EARWYLIQTKPRQEARAEEHLRRQH---------FQCYRPLQ-VDVKKTAARVQADEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P
Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V ++ G ++ I + D R + + + R + L + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMGLPISSLSRV 166
>gi|330953998|gb|EGH54258.1| transcriptional activator RfaH [Pseudomonas syringae Cit 7]
Length = 170
Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 15/173 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + + E P + V + + G +V + FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQ-VDAKKPGTRVQAGEALFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D IE I ++ P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----ATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ + I + D R + + + R V L + + +I
Sbjct: 115 TQGDAVLITHASWGEVEAIFLSEDG-AQRAVILLNMLQRQQKVVLPISSLSRI 166
>gi|298487576|ref|ZP_07005617.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157668|gb|EFH98747.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 170
Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 15/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++Q E +A E + + + P + V + +V ++ F
Sbjct: 7 EARWYLIQTKPRQEARAEEHLRRQH---------FQCYRPLQ-VDVKKTAARVQADEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P
Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V ++ G ++ I + D R + + + R + L + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSGDG-TERAVILLNMLQRQQKMVLPISSLSRV 166
>gi|256822138|ref|YP_003146101.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069]
gi|256795677|gb|ACV26333.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069]
Length = 167
Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ E +A+E + + +P V + +G++ + F
Sbjct: 5 EKSWYLINSKPKQELRALEHLKNQEIN---------CVLPVLEVERIIRGKRQKAIEPLF 55
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ ++ + + I+ T V F+ G P V DS +EH++ + P+ +
Sbjct: 56 PGYLFVELQTNGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLL--ILDTSFTPIETN 113
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G++V ++DGPF G+ K + EK R V + I G+VT +EL Q+ K
Sbjct: 114 APGAGDKVIITDGPFKDLEGVFKISNGEK-RSIVLLTILGKVTEMELENKQLRK 166
>gi|113969657|ref|YP_733450.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|114046887|ref|YP_737437.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
gi|113884341|gb|ABI38393.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
gi|113888329|gb|ABI42380.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
Length = 166
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 11/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++G+K FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGQKRICRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ + +
Sbjct: 53 NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHEL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE++ DGPF GI + K R V I G++ + + VE++
Sbjct: 113 ELKTGEKIRFKDGPFIDLEGIFQEKCPNK-RCQVLFNIMGQIKTLTVPMQSVERV 166
>gi|85714631|ref|ZP_01045618.1| transcriptional antitermination protein, putative [Nitrobacter sp.
Nb-311A]
gi|85698516|gb|EAQ36386.1| transcriptional antitermination protein, putative [Nitrobacter sp.
Nb-311A]
Length = 170
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+VQ + + E KA + + E+ +P R + FP
Sbjct: 7 QWYVVQTHPHAEGKAAAHLRRQ---------GFEVYLPRYARRRRHARRVDITASPLFPR 57
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
Y+ + + + + I+ T V + +G+ P+PV D + + + ++ +
Sbjct: 58 YLFVAIDLVHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAPR 117
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F G+ V V DG F+ G+ +++ + RV V + + GR V + + +E
Sbjct: 118 FSAGDTVRVVDGAFSDCLGLFESMS-DGERVLVLLDLLGRKVRVTMDIDTIE 168
>gi|292559253|gb|ADE32254.1| transcription antitermination protein NusG [Streptococcus suis
GZ1]
Length = 172
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++Q YS E K E++ R + + + IP++ V + G E FP
Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVI 86
GYVL++ VMTD+ + +++TP V
Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVT 90
>gi|257484619|ref|ZP_05638660.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289628356|ref|ZP_06461310.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289650105|ref|ZP_06481448.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
str. 2250]
gi|320323819|gb|EFW79903.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327958|gb|EFW83963.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330869759|gb|EGH04468.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330882283|gb|EGH16432.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
str. race 4]
gi|331011293|gb|EGH91349.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 170
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 15/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++Q E +A E + + + P + V + +V ++ F
Sbjct: 7 EARWYLIQTKPRQEARAEEHLRRQH---------FQCYRPLQ-VDVKKTAARVQADEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P
Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V ++ G ++ I + D R + + + R + L + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166
>gi|126175096|ref|YP_001051245.1| transcriptional acivator RfaH [Shewanella baltica OS155]
gi|125998301|gb|ABN62376.1| transcription antitermination protein nusG [Shewanella baltica
OS155]
Length = 168
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P +GRK FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSHRGRKQVCRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ A ++
Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEAL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R H+ I G+V V + ++++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRVC 167
>gi|302188213|ref|ZP_07264886.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
642]
Length = 170
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 15/173 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++Q E +A E + + E P + + G + ++ FPG
Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQQ---------FECYRPLQADAK-KTGIRGQADEPLFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ I ++ I+ T V + G +P PV D IE I ++ P F
Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----ATPAPKTQF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ + I + D R + + + R V L + + I
Sbjct: 115 ARGDAVLITHASWGDVEAIFLSEDG-TQRAVILLNMLQRQQKVVLPISSLSLI 166
>gi|303238542|ref|ZP_07325076.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
gi|302593940|gb|EFL63654.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
Length = 176
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V + E + + +P ++ VRKG+ + FFPGY
Sbjct: 3 WYALHVKTGAENDVENFL-----HYNFESNECHSIVPKRKLTEVRKGKCYEVIKIFFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
VLI M+ +Y+ I+ P V L GE S ++D EI ++ ++ + S +F
Sbjct: 58 VLINLDMSTDIYYIIRKIPNVYTVLKQDGEYYSRISDEEINPLLKLLKDSDLIDYSKIFI 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA---YNQVEK 175
E +V V+ GP G+++ VD+ + R V + G V+L + +EK
Sbjct: 118 E-NSKVSVNSGPLLGLEGLIRKVDKRRGRAKVALNFMGSEKTVDLGVEILSSLEK 171
>gi|307302360|ref|ZP_07582118.1| NusG antitermination factor [Shewanella baltica BA175]
gi|306914398|gb|EFN44819.1| NusG antitermination factor [Shewanella baltica BA175]
Length = 168
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++GRK FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGRKQVCRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ A ++
Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEAL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R H+ I G+V V + ++++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRVC 167
>gi|120598282|ref|YP_962856.1| NusG antitermination factor [Shewanella sp. W3-18-1]
gi|120558375|gb|ABM24302.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1]
Length = 168
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 11/174 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E +A +++ + L+ + P ++G+K FP Y
Sbjct: 4 WYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGQKRICRVPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ IK + + T V + E +P+ D I I M + ++
Sbjct: 55 LFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESEL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GER+ DGPF GI + K R HV + G+V + + +E++
Sbjct: 115 KMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERVC 167
>gi|330960426|gb|EGH60686.1| transcriptional activator RfaH [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 176
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 15/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q EK+A E + + E P + +V SE FP
Sbjct: 14 ARWYLIQTRPRQEKRAEEHLRRQR---------FECYRPLKAAAKP-SLIRVQSEEALFP 63
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P P+ D IE I +++ P
Sbjct: 64 GYLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPIHDQLIEQIRDRLTL----PQRHTA 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F GE+V ++ G F I D R + + + R V L + + +I
Sbjct: 120 FAQGEQVMITTGSFCDVEAIFLTADG-NERAVILLNLLQRQQKVVLPISSLSRI 172
>gi|304409927|ref|ZP_07391546.1| NusG antitermination factor [Shewanella baltica OS183]
gi|304351336|gb|EFM15735.1| NusG antitermination factor [Shewanella baltica OS183]
Length = 168
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++GRK FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGRKQVCRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ A ++
Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPAQTVLAEAL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ GE++ +DGPF GI + K R H+ I G+V V + ++++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRVC 167
>gi|295106671|emb|CBL04214.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 174
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV E++ + + + D ++ E IP ++ KG PGY
Sbjct: 2 WYVVQVVGGRERRVLHLVEQLVD----DDVLQECFIPQYEIMKKTKGEWKRRSEILLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + D+ ++ P LG P+ EI I + + S
Sbjct: 58 LFLITDKVDQAADELRKVPAFTKLLGNDNAFIPLNADEIAFIDSFTTKDHRVVEMSEGVI 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ + ++ GP +VK +D K +VE +FGR +++ V K
Sbjct: 118 EGDEISITKGPLVHQTALVKKIDRHKRLAYVETTMFGRKLNLKVGLEIVRK 168
>gi|146293640|ref|YP_001184064.1| NusG antitermination factor [Shewanella putrefaciens CN-32]
gi|145565330|gb|ABP76265.1| transcription antitermination protein nusG [Shewanella putrefaciens
CN-32]
Length = 168
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++G+K FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGQKRICRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ IK + + T V + E +P+ D I I M + ++
Sbjct: 53 NYLFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEES 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GER+ DGPF GI + K R HV + G+V + + +E++
Sbjct: 113 ELKMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERVC 167
>gi|117919822|ref|YP_869014.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
gi|117612154|gb|ABK47608.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
Length = 166
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 11/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++G+K FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGQKRICRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ + +
Sbjct: 53 NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHEL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE++ DGPF GI + K R HV I G+ V + + V ++
Sbjct: 113 ELKTGEKIRFKDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQSKVVTVPQDSVVRL 166
>gi|300914898|ref|ZP_07132214.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|307723869|ref|YP_003903620.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
gi|300889833|gb|EFK84979.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
gi|307580930|gb|ADN54329.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
Length = 184
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S E K + I ++ IP +++ KG+ V + FP
Sbjct: 7 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S
Sbjct: 61 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 120
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V I G + V+LA +E +
Sbjct: 121 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVMENV 173
>gi|330888816|gb|EGH21477.1| transcriptional activator RfaH [Pseudomonas syringae pv. mori str.
301020]
Length = 170
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++Q E +A E + + P + V + +V ++ F
Sbjct: 7 EARWYLIQTKPRQEARAEEHLRRQH---------FHCYRPLQ-VDVKKTAARVQADEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P
Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V ++ G ++ I + D R + + + R + L + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166
>gi|213971370|ref|ZP_03399485.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1]
gi|301381257|ref|ZP_07229675.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
Max13]
gi|302059482|ref|ZP_07251023.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
K40]
gi|302129862|ref|ZP_07255852.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923908|gb|EEB57488.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1]
Length = 170
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 15/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q E +A E + E P R + + K E FP
Sbjct: 8 ARWYLIQTKPRQEARAEEHLRR-------QD--FECFRPL-RAAAKKIAAKAQVEEALFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P PV D IE I ++ P ++
Sbjct: 58 GYLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----CTPAPALR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G++V ++ G + I D R + + + R V L + + +I
Sbjct: 114 FTQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166
>gi|240047307|ref|YP_002960695.1| transcription antitermination protein NusG [Mycoplasma conjunctivae
HRC/581]
gi|239984879|emb|CAT04872.1| Transcription antitermination protein [Mycoplasma conjunctivae]
Length = 184
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSG--LDHLVTEIT---IPSERVVSVRKGRKVNSERRFF 61
++ SN E A+ + R+ G + EI +P + K + +
Sbjct: 1 MISTISNKEDTAITLLKNRIEHEGPEMKAHFKEIIKFDVPYYAEKENTQ-EKKIKYQNLY 59
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
GY IK M D+ ++ +++T + G +G+ G P+P++D + + + E +
Sbjct: 60 KGYFFIKMDMNDQAWYIVRNTQYITGLVGSHGRGAKPTPISDRHFKKMKDNWEQIINDFK 119
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQV 173
++ ++ + V + DGPF G V + +++ + VE+ +FG+ Y V
Sbjct: 120 QYKGITLKIKIDDLVKIIDGPFNGDIGRVVAISDDRKVIDVELDNVFGKKAITSFDYKVV 179
Query: 174 EK 175
EK
Sbjct: 180 EK 181
>gi|28870605|ref|NP_793224.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28853853|gb|AAO56919.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331019789|gb|EGH99845.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 170
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 15/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q E +A E + E P R + + K E FP
Sbjct: 8 ARWYLIQTKPRQEARAEEHLRR-------QD--FECFRPL-RAAAKKIAAKAQVEEALFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I ++ I+ T V + G +P PV D IE I ++ P ++
Sbjct: 58 GYLFIHMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----CTPAPALR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G++V ++ G + I D R + + + R V L + + +I
Sbjct: 114 FTQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166
>gi|171920742|ref|ZP_02931951.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|195867483|ref|ZP_03079487.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|209554214|ref|YP_002285036.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|171903489|gb|EDT49778.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|195660959|gb|EDX54212.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|209541715|gb|ACI59944.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
Length = 257
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 52/225 (23%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49
T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+
Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82
Query: 50 ---KGRK--------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
+ E F GY+ +KA MTD+++ I++T V G +G+
Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142
Query: 93 E---NPSPVTDSEIEHIMNQVEAA-----------VQRPVSSVF---------FEVGERV 129
P PV + +I ++ +A Q+ V V FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVSLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F + +D+ K VE FGR+ ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247
>gi|185178827|ref|ZP_02964615.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188024461|ref|ZP_02997110.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188518411|ref|ZP_03003907.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|225550802|ref|ZP_03771751.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
gi|225551181|ref|ZP_03772127.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|184209462|gb|EDU06505.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188018757|gb|EDU56797.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188998114|gb|EDU67211.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|225378996|gb|EEH01361.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|225379956|gb|EEH02318.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
Length = 257
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 52/225 (23%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49
T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+
Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82
Query: 50 ---KGRK--------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
+ E F GY+ +KA MTD+++ I++T V G +G+
Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142
Query: 93 E---NPSPVTDSEIEHIMNQVEAA-----------VQRPVSSVF---------FEVGERV 129
P PV + +I ++ +A Q+ V V FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F + +D+ K VE FGR+ ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247
>gi|167037961|ref|YP_001665539.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040859|ref|YP_001663844.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
gi|320116378|ref|YP_004186537.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166855099|gb|ABY93508.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
gi|166856795|gb|ABY95203.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929469|gb|ADV80154.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 179
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S E K + I ++ IP +++ KG+ V + FP
Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S
Sbjct: 56 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 115
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V I G + V+LA +E +
Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVMENV 168
>gi|13358146|ref|NP_078420.1| transcription antitermination factor [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|170762353|ref|YP_001752666.1| transcription termination/antitermination factor NusG [Ureaplasma
parvum serovar 3 str. ATCC 27815]
gi|171920320|ref|ZP_02931664.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|183508497|ref|ZP_02958026.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701857|ref|ZP_02971518.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|11357058|pir||A82874 transcription antitermination factor UU581 [imported] - Ureaplasma
urealyticum
gi|6899590|gb|AAF30995.1|AE002156_10 transcription antitermination factor [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|168827930|gb|ACA33192.1| transcription termination/antitermination factor NusG [Ureaplasma
parvum serovar 3 str. ATCC 27815]
gi|171902739|gb|EDT49028.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675925|gb|EDT87830.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701156|gb|EDU19438.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 258
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 52/224 (23%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------- 49
+WYIV V S E+K +E+I +L+ G ++++ I E++ V+
Sbjct: 24 HQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMKN 83
Query: 50 --KGRK--------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
+ E F GY+ +KA MTD+++ I++T V G +G+
Sbjct: 84 RANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSSG 143
Query: 94 ---NPSPVTDSEIEHIM-------------NQVEAAVQRPVSS-------VFFEVGERVC 130
P PV + +I ++ +V+ V FEV + V
Sbjct: 144 KNVKPIPVPEDKILKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEVDQEVK 203
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F + +D+ K VE FGR+ ++L +N ++
Sbjct: 204 IIADTFFGEIAKIAKIDQNKKIATVEFEFFGRINTLDLNFNDIQ 247
>gi|188524233|ref|ZP_03004287.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|198273402|ref|ZP_03205938.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
gi|195659836|gb|EDX53216.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|198249922|gb|EDY74702.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
Length = 257
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 52/225 (23%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49
T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+
Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82
Query: 50 ---KGRK--------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
+ E F GY+ +KA MTD+++ I++T V G +G+
Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142
Query: 93 E---NPSPVTDSEIEHIMNQVEAA-----------VQRPVSSVF---------FEVGERV 129
P PV + +I ++ +A Q+ V V FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRTLVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202
Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ F + +D+ K VE FGR+ ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247
>gi|256751800|ref|ZP_05492673.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|256749328|gb|EEU62359.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
Length = 179
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S E K + I ++ IP +++ KG+ V + FP
Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S
Sbjct: 56 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 115
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E GERV + +GP + G++K +D+ K R V I G + V+LA +E +
Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVMENV 168
>gi|289577938|ref|YP_003476565.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
gi|297544211|ref|YP_003676513.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289527651|gb|ADD02003.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
gi|296841986|gb|ADH60502.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 179
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ E K + I ++ +P +++ KG+ V + FP
Sbjct: 2 KKWYVIFTRGGFENKVKDIIQNCFKEE------VKLLVPKRKIIERVKGQPVEKIKLLFP 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + A M+D++Y+ + + K FL G+ P+ V + E++ I++ ++ + VS
Sbjct: 56 GYVFVNAEMSDELYYKMSEVLKRGVFLKEGKRPAFVREEEMKIILSLIKNSDLIDVSKGI 115
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
E GERV + +GP + G++K +D+ K R V + I G + V+LA +E
Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 166
>gi|319427039|gb|ADV55113.1| transcriptional acivator RfaH [Shewanella putrefaciens 200]
Length = 168
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 11/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++G+K FP
Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLETYL-----PMVSEEKSQRGQKRICRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ IK + + T V + E +P+ D I I M + ++
Sbjct: 53 NYLFIKFDPSQTSVRQVHSTRGVNRIINCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEES 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GE++ DGPF G+ + K R HV + G+V + + +E++
Sbjct: 113 ELKMGEKIRFKDGPFVDLEGVFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERVC 167
>gi|300309822|ref|YP_003773914.1| transcription activator protein [Herbaspirillum seropedicae SmR1]
gi|300072607|gb|ADJ62006.1| transcription activator protein [Herbaspirillum seropedicae SmR1]
Length = 165
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+V E A +++ + E +P VR+G S FP
Sbjct: 1 MQWYLVHTKPRQEVCAQQNLEQQ---------GYECYLPLLHKEKVRRGALTLSSEALFP 51
Query: 63 GYVLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ I+ A +T K + I+ T V + G P+ +++ + + + + PV
Sbjct: 52 RYLFIRLGAGLTSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLA-LQAAQQSEAAPVER 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F G+RV + +G + GI D E+ RV V + + + V +A + KI+
Sbjct: 111 A-FTPGQRVQLVEGALSGIEGIFLEADGER-RVMVLIEMLSKPVSVAVAPGSLRKIL 165
>gi|220924919|ref|YP_002500221.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219949526|gb|ACL59918.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 230
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP----SERVVSVRKGRKVN 55
M RW++V + ++ +++ IP SE VV VR GR +
Sbjct: 54 MAAVRWHLVDCRAGKARQFADALAAGA-------------IPALRLSEEVVRVRSGRPIR 100
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKD-----TPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+ F + + + H ++D V F E V E++ +
Sbjct: 101 TRMPLFGRLLFVGLDPHSEDAHWLRDKYDREIKGV-RF--RDEKFMLVPGRELDQFTGVL 157
Query: 111 EAAVQRPVSSV-------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
V FE+GE V V+DGPFASF+G+V+ +D E + V V IFGR
Sbjct: 158 GGDVPPAERRTGAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRS 217
Query: 164 TPVELAYNQVEKI 176
TPV L QVEK+
Sbjct: 218 TPVTLEPTQVEKL 230
>gi|257456059|ref|ZP_05621262.1| transcription antitermination protein, NusG family [Treponema
vincentii ATCC 35580]
gi|257446517|gb|EEV21557.1| transcription antitermination protein, NusG family [Treponema
vincentii ATCC 35580]
Length = 186
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y VQV + E + + ++ + ++ + P + +KG + + FPGY+
Sbjct: 4 YAVQVKTGKEPE----LLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGYI 59
Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
++ ++ + ++ TP FL +NP P+ D+++ + + + S V+F+
Sbjct: 60 FLEIDDLSLPLCWQLRKTPNFYHFLPNNQNPLPLVDNDLSLLHHFLSFGEVTAPSKVYFD 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
R+CV DG G + VD K R V + ++ P++LA++ +E
Sbjct: 120 ANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIE 169
>gi|237799523|ref|ZP_04587984.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022379|gb|EGI02436.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 166
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q E +A E + + E P + ++ + FP
Sbjct: 8 ARWYLIQTKPRQEARAAEHLQRQH---------FECYRPLQATA-----KRTVAREALFP 53
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G P PV D+ IE I ++ A P +
Sbjct: 54 GYLFIRMDQVHDNWYPIRSTRGVSRIVTFGGQPVPVRDALIEQIRQRLSA----PSADTR 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V ++ G ++ I D R + + + R V L + + ++
Sbjct: 110 FTRGDIVLINTGSLSAVEAIFLTADG-SERAVILLSMLQRQHQVVLPISSLSRV 162
>gi|228931282|ref|ZP_04094212.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|229188095|ref|ZP_04315179.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|228595336|gb|EEK53072.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
6E1]
gi|228828377|gb|EEM74082.1| Transcription antitermination protein nusG [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 179
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 11/172 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V S E I L+ + + +P + V RKG R+ PGY
Sbjct: 6 WYALCVRSGYEDLVESLIL-----RDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRPVS 119
+LI M K+Y+ +K+ P FL ++ + D EI I+ + S
Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+FE G +V V GP GI++ +D+ K R + + G +++
Sbjct: 121 EAYFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVE 171
>gi|24374707|ref|NP_718750.1| transcriptional activator rfaH, putative [Shewanella oneidensis
MR-1]
gi|24349362|gb|AAN56194.1|AE015757_4 transcriptional activator rfaH, putative [Shewanella oneidensis
MR-1]
Length = 166
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 11/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + L+ + P ++G+K FP
Sbjct: 2 KAWYLLYCKPRSEVRAQQNL----ALQNLETYL-----PMVSEEKSQRGQKRICRVPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSV 121
Y+ I + + T V + E +P+ D I I M ++ + + +
Sbjct: 53 NYLFINFDPSQTSVKQVHSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTPL 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE++ DGPFA I + K R HV I G++ + + VE++
Sbjct: 113 ELKTGEKIRFKDGPFADLEAIFQEKCPNK-RCHVLFNIMGQINILTVPEQSVERV 166
>gi|116750229|ref|YP_846916.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|116699293|gb|ABK18481.1| transcription antitermination protein nusG [Syntrophobacter
fumaroxidans MPOB]
Length = 207
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 10/173 (5%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ W+ + V EK I RL + + + +P S R+ R+ F
Sbjct: 33 SKAWFALYVQVKHEK----DIIRRLEQKDV-----DCFLPLMECWSKRRDRRKRITVPLF 83
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV + V+ + I TP + + E P P+ +I ++ + A+ Q
Sbjct: 84 PGYVFVYTVLDNYTNVDILKTPGAVNIVRNSEGPLPIPSYQIRNLRTILGAS-QSIELHP 142
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + GE V V GP GI+K ++ R+ V V R VEL VE
Sbjct: 143 YLKEGECVRVVRGPLNGCVGILKRHSPKQGRLVVRVDCIQRSVSVELDVEDVE 195
>gi|330967921|gb|EGH68181.1| transcriptional activator RfaH [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 170
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 15/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++Q E +A E + + E P R + + K +E FP
Sbjct: 8 ARWYLIQTKPRQEARAEEHLRRQN---------FECFRPL-RAAAKKIAAKAQAEEALFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ ++ I+ T V + G +P PV D IE I ++ P +
Sbjct: 58 GYLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPVLR 113
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G++V ++ G + I D R + + + R V L + + +I
Sbjct: 114 FTQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166
>gi|116749134|ref|YP_845821.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|116698198|gb|ABK17386.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
Length = 212
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T W+ + V EK+ V + + + +P S R R+ F
Sbjct: 38 TKSWFALYVQVKHEKEVVRRLDQKS---------IDCFLPLMECWSKRLDRRKRITLPLF 88
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGYV + V+ + I TP + L E P P+ +IE++ + ++ +
Sbjct: 89 PGYVFVHTVLDNYTNVNILKTPGALSILKNSEGPLPIPVYQIENLQTILNSSKSLDLH-P 147
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ + GE V V GP + GI+K +K R+ V V + VEL VE +
Sbjct: 148 YLKEGEWVRVIRGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVEATI 203
>gi|30248484|ref|NP_840554.1| putative transcriptional activator [Nitrosomonas europaea ATCC
19718]
gi|30138370|emb|CAD84379.1| putative transcriptional activator [Nitrosomonas europaea ATCC
19718]
Length = 165
Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V EK A +++ + +P V + G + FP
Sbjct: 1 MHWYLVHTKPKQEKCAFQNLQQQ---------GYRCYLPMLPVEKLHLGNLTVVDEPLFP 51
Query: 63 GYVLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ I+ D K + I+ T V + G P+ + D I+ + +++ A +
Sbjct: 52 RYLFIQLEQGDSAKSWVPIRSTRGVNRLVCFGSEPARIDDILID--LLRMQEASFQHKPE 109
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ GERV +++G FA GI + + E+ RV V + + + + ++ + K
Sbjct: 110 RLFKPGERVRLTEGAFAGIEGIYQMAEGER-RVMVLIELLSKPVAMRVSPTSLRK 163
>gi|330986281|gb|EGH84384.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 170
Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
RWY++Q E +A E + + + P + V + +V ++ F
Sbjct: 7 EARWYLIQTKPRQEARAEEHLRRQH---------FQCYRPLQ-VDVKKTAARVQADEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P
Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+ V ++ ++ I + D R + + + R + L + + ++
Sbjct: 113 RFIQGDPVMITTSSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166
>gi|319936183|ref|ZP_08010603.1| NusG antitermination factor [Coprobacillus sp. 29_1]
gi|319808757|gb|EFW05290.1| NusG antitermination factor [Coprobacillus sp. 29_1]
Length = 170
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV S E++ + +S D ++ E IP +G + F GY
Sbjct: 3 WYVIQVRSGHEREIADKCRFLIS----DEILKECFIPEYICKKKFRGEWHDVRNVLFRGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS-PVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V + + D++++ +K P +G + P+ D E+E + SV F
Sbjct: 59 VFLISDHIDELFNELKKIPDFTKVIGKKKETIYPLKDGEVE-FLKTFGKDDHIVDMSVGF 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ +++GP G++ +D K ++ V IF T ++ + K
Sbjct: 118 IEGDRIHITEGPLQGREGLIAKIDRHKRIAYISVNIFNEETTAKVGLEIISK 169
>gi|237734430|ref|ZP_04564911.1| nusG antitermination factor [Mollicutes bacterium D7]
gi|229382660|gb|EEO32751.1| nusG antitermination factor [Coprobacillus sp. D7]
Length = 173
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++QV + E+K + +SR ++ E IP + +G +
Sbjct: 1 MYENWYVIQVRTGKEEKIKNTCEKLISR----DILEECFIPKCIRLKKYQGTWKEVDEVL 56
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
F GYV + + D++++ +K P + LG P+ E ++ + +S
Sbjct: 57 FKGYVFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEEAIFLLKFGKEKHIVDLS 116
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ E G+++ + GP + G++K +D K ++EV +F ++T V++ + K
Sbjct: 117 QGYIE-GDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGK 171
>gi|91203041|emb|CAJ72680.1| similar to transcription antitermination protein NusG [Candidatus
Kuenenia stuttgartiensis]
Length = 169
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
M W+ V S EK+ + + S +P + +S R+ RK +
Sbjct: 1 MEKNVAYWFAVHTRSRHEKQVDSFLREKNISS---------FLPLVKTISRRRDRKKFID 51
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQ 115
FPGY+ + + + + IK T V+ +G ++ PSP+ D+EI ++ + + V
Sbjct: 52 VPLFPGYLFVNITLDN--LYEIKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLINSNVA 109
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + G +V V GP G++ RV V + I + T E++ +E
Sbjct: 110 IDPYK-YLQKGTKVRVVSGPLIGLEGLLVKRKT-NYRVVVSIDILQKSTSAEISIADIES 167
Query: 176 I 176
I
Sbjct: 168 I 168
>gi|91794023|ref|YP_563674.1| transcriptional activator RfaH [Shewanella denitrificans OS217]
gi|91716025|gb|ABE55951.1| transcription antitermination protein nusG [Shewanella
denitrificans OS217]
Length = 166
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ E +A +++ ++ +P + +G+ E F
Sbjct: 2 KAWYLLYCKPKSELRAQQNLALQQVES----------YLPVIKEQKTARGKTKVVEVPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ I T+ +TI T +G E +P+ D+ I I ++V +
Sbjct: 52 PNYLFIHFDPTEFSVNTIHSTRGASRIIGCKELMTPINDAIIAEIKHRV--GNHQVELQP 109
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV GPFA + I + + +K R HV I G+ +++ +Q+
Sbjct: 110 ELVKGDRVRFIQGPFADLDAIFEEHNGDK-RCHVLFTIMGQQKSLQVNLDQI 160
>gi|149376808|ref|ZP_01894565.1| Transcriptional activator RfaH [Marinobacter algicola DG893]
gi|149358929|gb|EDM47396.1| Transcriptional activator RfaH [Marinobacter algicola DG893]
Length = 163
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 68/171 (39%), Gaps = 16/171 (9%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
MT WY +Q + +A+ + + P V ++ G++
Sbjct: 1 MT--WYALQHKPSQGDRALTHLQN-------QDIA--CFYPKITVEKIKAGKRTKQLEPL 49
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+ + TD ++ ++ T ++ + P+ + D I+HI + + ++
Sbjct: 50 FPGYLFVNLEQTDPMWAKLRSTRGILRIVSFANKPAAIPDDVIQHIKDSLHTVAEQG--- 106
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ G+ V + +GPF I + D E R V + + V++ +
Sbjct: 107 -GIKPGQAVELDEGPFKGIEAIFQAYDGE-ERAIVLISFMQKQQTVKVPLS 155
>gi|29654154|ref|NP_819846.1| transcriptional activator RfaH [Coxiella burnetii RSA 493]
gi|29541420|gb|AAO90360.1| transcriptional activator [Coxiella burnetii RSA 493]
Length = 167
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E R++ L+ I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N +A P S+ F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSASVPPKVSL-FQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVF-EMHSGAKRVTLLLDMVGKVTRVEVPLDSV 164
>gi|153208021|ref|ZP_01946555.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177']
gi|154705911|ref|YP_001424274.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111]
gi|165918933|ref|ZP_02219019.1| transcriptional activator RfaH [Coxiella burnetii RSA 334]
gi|212218308|ref|YP_002305095.1| transcriptional activator [Coxiella burnetii CbuK_Q154]
gi|120576221|gb|EAX32845.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177']
gi|154355197|gb|ABS76659.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111]
gi|165917403|gb|EDR36007.1| transcriptional activator RfaH [Coxiella burnetii RSA 334]
gi|212012570|gb|ACJ19950.1| transcriptional activator [Coxiella burnetii CbuK_Q154]
Length = 167
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E R++ L+ I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N +A P S+ F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSAGVPPKVSL-FQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVF-EMHSGAKRVTLLLDMVGKVTRVEVPLDSV 164
>gi|330831026|ref|YP_004393978.1| transcriptional activator RfaH [Aeromonas veronii B565]
gi|328806162|gb|AEB51361.1| Transcriptional activator RfaH [Aeromonas veronii B565]
Length = 166
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 10/167 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+ E +A + + G++ P + +R+G++V FP
Sbjct: 2 KKWYLAYCKPKEEARARAHLDAQ----GIESY-----YPMVEIEKLRRGKRVPVREPMFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ I + + T+K T + + G +P++ + +M++ ++ R +
Sbjct: 53 NYLFIFVDLEEVTPVTLKSTRGISRIIHFGSEWTPISSKLVYQLMSRDDSDEARASYASL 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
G++V + +GP A F I D EK R + V + R T
Sbjct: 113 PCSGDKVLIEEGPLAGFEAIYMEPDGEK-RAILLVSLLNRETTSSFD 158
>gi|298704929|emb|CBJ28432.1| putative transcription antitermination protein [Ectocarpus
siliculosus]
Length = 823
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ ++ E + S+ L +GL V EI +P +V + E + GY
Sbjct: 222 WYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPCRQVPKQVGTKVTFKEEPIYQGY 281
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------PSPVTDSEIEHIMNQVEAAVQRPV 118
+ K M+ +V + D +++GF+G + P + +IE I +A +
Sbjct: 282 IYCKVKMSLEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKASEKALGANKI 341
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ VG+ V +S+GPFA G V + + + V V FGR + V L ++ V K+
Sbjct: 342 PQL-LGVGDLVEISEGPFALKKGEVSKIKDGEYVVKVNT--FGRNSDVRLDWDGVRKL 396
>gi|160915636|ref|ZP_02077844.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991]
gi|158432112|gb|EDP10401.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991]
Length = 182
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV S EK+ E +S ++TE IP G + + F GY
Sbjct: 15 WYVVQVRSGHEKQIAEKCRTMISN----DILTECFIPEYIHKRKFSGVWHDVKDVLFKGY 70
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V + D +Y +K P + +G + P+ + EI M S+ F
Sbjct: 71 VFMITDKIDLLYSELKKIPDFVKVIGKKQAEIYPLDEDEI-AFMKSFGKKGHIVDMSIGF 129
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+++ +++GP G++ +D K ++ + +F + T ++ + K
Sbjct: 130 IRGDKIYITEGPLQGKEGLIVKIDRHKRIAYLRLSMFNKETTTKVGLEIISK 181
>gi|212212718|ref|YP_002303654.1| transcriptional activator [Coxiella burnetii CbuG_Q212]
gi|212011128|gb|ACJ18509.1| transcriptional activator [Coxiella burnetii CbuG_Q212]
Length = 167
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E R+S L+ I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQE---------RISEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N +A P S+ F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSAGVPPKVSL-FQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVF-EMHSGAKRVTLLLDMVGKVTRVEVPLDSV 164
>gi|308271745|emb|CBX28353.1| hypothetical protein N47_G36770 [uncultured Desulfobacterium sp.]
Length = 170
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 11/172 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P WY++ S E E + + ++ + ++ + S RV RK+ FP
Sbjct: 7 PSWYVIHTKSRFENVVHEGLIKK----NVESFLPKVLVRSRRV-----DRKIMIRVPLFP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ +K+ + + I T V+ +G P V D I + + A + + V
Sbjct: 58 GYMFVKSDLRPERQIEIFKTVGVVRMVGNRSGPISVPDETIAS-LKIMTAGEGKIFTGVK 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F G+ V V GPF G N + RV V++ G+ VE+ + +E
Sbjct: 117 FRKGDMVLVIRGPFEGVTGTF-NRHGKIGRVVVDIEALGQFASVEVDEDDIE 167
>gi|78188132|ref|YP_378470.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3]
gi|78170331|gb|ABB27427.1| transcription antitermination protein nusG [Chlorobium
chlorochromatii CaD3]
Length = 197
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK +++ R S +P + RK F GY
Sbjct: 10 WYAVYVRSRYEKKVYQALLEREVNS---------FLPLYETIRQWSDRKKKVSEPLFRGY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + M + + DT V+ F+G G PS + + EIE + V +
Sbjct: 61 VFVNIAMQQESI-KVLDTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRTVASLP 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVI 159
G++V V GPF G+V E V VEV I
Sbjct: 120 AGQKVRVIAGPFKDMEGVVVKEGRESQIVIYFDSIMQGVEVSI 162
>gi|121999044|ref|YP_001003831.1| NusG antitermination factor [Halorhodospira halophila SL1]
gi|121590449|gb|ABM63029.1| transcription antitermination protein nusG [Halorhodospira
halophila SL1]
Length = 175
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V E++A ++ DH +P R R+ R FP Y
Sbjct: 15 WYLVYSKPRQEERAWWNL---------DHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ + + I+ T V G + G P+ V D ++ I ++E +
Sbjct: 66 LFIRLAAGLEDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDGHCDLAPE-PLQ 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GERV V DGPF S+ GI + + RV + + + G+ T + ++ +Q+E+
Sbjct: 125 PGERVRVLDGPFQSYEGIFRASRSD-ERVMILLDVAGQHTTLTVSQHQIER 174
>gi|296445155|ref|ZP_06887115.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
gi|296257329|gb|EFH04396.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
Length = 183
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 11/175 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T RWY+VQ E V + + +P + + F
Sbjct: 20 TRRWYVVQTRPQREAGVVLQLEAQN---------FRAFLPRVTRTIRHARKLRMVQAPVF 70
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ + + + ++ T +G + + P+P +E +++ +A +
Sbjct: 71 PGYLFVSLDLQRDRWRSVNGTFGAVGLIMGDDYPAPTPHGVVEQLLSCADARGAC-RFDL 129
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V V GPFA G + + + RV V + I G PV L + + +
Sbjct: 130 DLAEGQKVKVLAGPFADAIGSLVRL-GDNERVQVLLDIMGGRVPVTLERSALAAV 183
>gi|257458184|ref|ZP_05623338.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
gi|257444478|gb|EEV19567.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
Length = 131
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERR 59
M WYI+ ++S EK+ +I + + +++EI IP E + V+ G+K R+
Sbjct: 1 MAKEWYILHIFSGYEKRIERAIRLLIENGEIPAGVISEIKIPEEELTEVKDGKKRVVRRK 60
Query: 60 FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA 112
F PGY+LI+ + + I+ V GFLG P ++ E + ++ +
Sbjct: 61 FLPGYILIEMDLPAVNWKSVCTPIRRIHGVTGFLGVVGDARPQSISADEAKSVLQKSGE 119
>gi|242037557|ref|XP_002466173.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor]
gi|241920027|gb|EER93171.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor]
Length = 334
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 53/228 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59
+ P+W++V+V V+ + +SR + +I PS +V + G +
Sbjct: 99 LGPQWWLVRVSMAPGTDYVDLLTKAISRR-YPEVTFKIYNPSIQVKRRLKSGAISVKSKP 157
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111
PG V + + +++ I+DT GF+G + P P+ E+E I+ + +
Sbjct: 158 LHPGLVFMHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPIDEVESIIREEK 217
Query: 112 AAVQRPVSSVF-------------------------------------------FEVGER 128
+R F G
Sbjct: 218 EEQERVDREFEEMENMGNVEPFSKPVEESELMLMNKIKKQFKKSSLNGGTRHSAFSPGAT 277
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V V GPF F G + V+ + + V++++FG+ + V+L ++Q+E I
Sbjct: 278 VHVLSGPFEDFTGSILEVNRKNKKATVQLILFGKESFVDLDFDQIEAI 325
>gi|226313581|ref|YP_002773475.1| transcription antitermination protein [Brevibacillus brevis NBRC
100599]
gi|226096529|dbj|BAH44971.1| putative transcription antitermination protein [Brevibacillus
brevis NBRC 100599]
Length = 177
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY + V S E+ + + + L +V + +P + G N + FFP
Sbjct: 1 MKWYAIFVESGKEEVVQKYLRLYFNEQSLKSIVPKRLVP-----EKKSGIVYNVLKNFFP 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--------NPSPVTDSEIEHIMNQVEAAV 114
GYVLI+ MT++++H IK P+ + + G S + + EI I+ +
Sbjct: 56 GYVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGE 115
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
S V+ E +V V GP GI+K VD+ K+R + + G +++ +
Sbjct: 116 VVDYSKVYLE-NSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILS 174
Query: 175 K 175
K
Sbjct: 175 K 175
>gi|71894376|ref|YP_278484.1| transcription antitermination protein [Mycoplasma synoviae 53]
gi|71851164|gb|AAZ43773.1| transcription antitermination protein [Mycoplasma synoviae 53]
Length = 202
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV---------TEIT-IPSERVVSVRKGRK 53
RWY++ + E VE++ R+ ++ ++ +PS + K +K
Sbjct: 7 RWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTELNKKQK 66
Query: 54 ----VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVI---GFLGTGENPSPVTDSEIEHI 106
+ FPGY+ +KA M D V++ I++T +V G G GE P+PV+ ++I
Sbjct: 67 GLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQNQIRKS 126
Query: 107 MNQVEAAV---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ + E A + + + +VG+ V ++DG + +++ + E + + F +
Sbjct: 127 LEKEEEAKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNMAEISFEDFNKK 186
Query: 164 TPVELAYNQVEKI 176
++ + + +I
Sbjct: 187 VEFKINLDWLTRI 199
>gi|220926733|ref|YP_002502035.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219951340|gb|ACL61732.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 254
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW++V ++A + + +R+G+ ++T+ + V GR+ +R+
Sbjct: 89 RRWHVVVAKPRYARRAAKDL----NRAGIPAVLTDERV----EVVAENGRRRIVQRQLLR 140
Query: 63 GYVLIKAV---MTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
+ + D V+ + ++D V LG P V +E+ + + +
Sbjct: 141 RVLFVGLKAGAPVDAVHGETYFVRDA--VRDGLG---RPIVVPPNELSQFVQALSDTLTE 195
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S FE G+ V + DGPFASFNG+V++ D R+ V V IFGR++ V L ++QVE+
Sbjct: 196 RDPSA-FEPGDEVWIKDGPFASFNGVVEDADFVTRRLKVGVQIFGRISSVGLDFSQVER 253
>gi|257063934|ref|YP_003143606.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476]
gi|256791587|gb|ACV22257.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476]
Length = 169
Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV +N E + + I + + ++ E +P V+ +G+ + PGY
Sbjct: 2 WYVIQVGTNQEDRVIGLIRSFVGK----DVLKEAFVPQVEVMRRSRGQWQKRKELLLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + A +K+ + D P LG + +P+ D EI+ + + S
Sbjct: 58 VFVIATDPEKLNQALIDVPAFTRLLGNDVSFTPLLDDEIKFLEAFTAPDRRIVRMSKGVI 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+++ +++GP G++K +D K ++E+ + GR +++ V K
Sbjct: 118 EGDQIIINEGPLRGQTGLIKRIDRHKRLAYLEMTVMGRKKMIKVGLEIVSK 168
>gi|161830667|ref|YP_001596878.1| transcriptional activator RfaH [Coxiella burnetii RSA 331]
gi|161762534|gb|ABX78176.1| transcriptional activator RfaH [Coxiella burnetii RSA 331]
Length = 167
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E R++ L+ I +P +V R G FP Y
Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I + + I+ T V + G P+ V ++ + N +A P S+ F+
Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSASVPPKVSL-FQ 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV + DG A + G+ + K RV + + + G+VT VE+ + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMYSGAK-RVTLLLDMVGKVTRVEVPLDSV 164
>gi|167463025|ref|ZP_02328114.1| putative transcription antiterminator [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322383390|ref|ZP_08057173.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
gi|321152294|gb|EFX45117.1| transcription antitermination-like protein NusG [Paenibacillus
larvae subsp. larvae B-3650]
Length = 176
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V + E + I + L + IP + V KG + + R FPGY
Sbjct: 3 WYVLFVTTGKEDVVGKYISNFCNHLSL-----QCFIPKKVVPECHKGVRRDVIRVLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--------PSPVTDSEIEHIMNQVEAAVQR 116
+ I+ M+ +Y+ +K+ P + + +G+ S + + E+E I +
Sbjct: 58 IFIRTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTI 117
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
S V + ++V V GP ++K VD+ K R +EV + + V++ N +
Sbjct: 118 EYSEVSI-INKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGINIL 173
>gi|85712703|ref|ZP_01043748.1| Transcription antiterminator RfaH [Idiomarina baltica OS145]
gi|85693435|gb|EAQ31388.1| Transcription antiterminator RfaH [Idiomarina baltica OS145]
Length = 165
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 79/170 (46%), Gaps = 15/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ E +A+E++ +R G + P V + +G++ FPGY
Sbjct: 9 WYVLKTKPRQEDRALENL----ARQGFNSFG-----PKLAVERILRGKRTVRTEPMFPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ +++ ++ ++ T V + G+ + S I+ I +EA+ + E
Sbjct: 60 IFVQSDELATQFYKLRSTYGVHSVVRFGDRIPKLPQSWIDSIRG-MEASAETQAP----E 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VG++V +++GPF F V +D E SR V + + ++Y++++
Sbjct: 115 VGDQVEITEGPFKGFLAKVVALDGE-SRCFVLLEWMQKEVKASMSYSELQ 163
>gi|312960453|ref|ZP_07774962.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6]
gi|311285338|gb|EFQ63910.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6]
Length = 169
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 15/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+VQ + +++A + R G ER++ KG + F
Sbjct: 9 AKAWYLVQCKARQDERAEAHL----QRQGYTC--FRSICTRERLL---KGERRVMTESLF 59
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ I+ + + ++ T V + G +P PV D ++ + + +P+ +
Sbjct: 60 PGYLFIQLS-SQDSWSPLRSTRGVSRIVAFGGDPLPVGDELVDELQRR----NHQPLVTP 114
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V +++GPFA G+ + E R V + + R V L N V+ +
Sbjct: 115 LWAPGENVRINEGPFAELEGVFLGMTGE-ERAIVLINLLHREHRVGLPLNAVKSL 168
>gi|146280091|ref|YP_001170248.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC
17025]
gi|145558332|gb|ABP72943.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC
17025]
Length = 174
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ N R++ L + P++ R ++ ++ FPGY
Sbjct: 13 WYLVQTKPN---------AFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGY 63
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ + I T V + G PSPV + I + +
Sbjct: 64 LFVRFNPEFPQWRAINATYGVSRLVTFGNIPSPVPHALIAGLRQRCANDGTLLPPE-QLS 122
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+G+RV + GPFA + V+ ++ +K RV + + I G T ++ ++K
Sbjct: 123 LGDRVRIISGPFADYVATVEQIEPDK-RVWILLDILGGQTKTQIQIAALQK 172
>gi|269102125|ref|ZP_06154822.1| transcriptional activator RfaH [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162023|gb|EEZ40519.1| transcriptional activator RfaH [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 200
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 12/176 (6%)
Query: 1 MTPRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M WY++ S E+ + LD E P R+ + +G+K
Sbjct: 35 MMKGWYLLYCKRSEQERAVI----------NLDRQGVECYYPQVRIDKIVRGKKQEVLEP 84
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP YV + Y +I+ T V F+ G P V I +M + +
Sbjct: 85 LFPSYVFVYFDPEQVSYTSIRSTRGVADFIRRGSTPQLVQQELIYQLMMNEDCDEHKEAL 144
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ + +S G F + I + D EK R + + + GR V + + K
Sbjct: 145 CELPKPGDSLTLSQGQFKGIDAIYQEADGEK-RSFMLINLLGRAVTVSVDNKDLIK 199
>gi|145300265|ref|YP_001143106.1| transcriptional activator RfaH [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853037|gb|ABO91358.1| transcriptional activator RfaH [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 165
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+ E +A + + G++ P + +R+G++V FP
Sbjct: 2 KKWYLAYCKPKEEARARAHLEAQ----GIESY-----YPMVEIEKLRRGKRVPVREPMFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ I + + T+K T + + G+ + ++ + +M++ ++ R +
Sbjct: 53 NYLFIYVDLEEVTPVTLKSTRGISRIIHFGKEWTAISSQLVYQLMSRDDSDEARASYANL 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
G++V + GP A F I D EK R + V + + T
Sbjct: 113 PTQGDKVLIESGPLAGFEAIYLEPDGEK-RAILLVSLLNQETSSSFD 158
>gi|157961221|ref|YP_001501255.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345]
gi|157846221|gb|ABV86720.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345]
Length = 173
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 19/182 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ S E +A +++ ++ +P+ + KG+ F
Sbjct: 2 KAWYLLYCKSRGESRAQQNLALQQIDT----------YLPTYPEEKLVKGQSTVRRVLLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-------MNQVEAAV 114
P Y+ + I +T VI +G E +P+ DS I I M+++
Sbjct: 52 PSYLFVHFDPEITSVAKIHNTRGVIRIVGCKELMTPIDDSIIHAIKMREHRLMSELSPIE 111
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
P E G++VC ++GPFA GI + EK R V + G+ V + + ++
Sbjct: 112 AAPTIEPEMERGDKVCFTEGPFAELEGIFDEANGEK-RCFVLFDLMGKQQRVAIKKDSIK 170
Query: 175 KI 176
+
Sbjct: 171 PV 172
>gi|117621236|ref|YP_855455.1| transcriptional activator RfaH [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562643|gb|ABK39591.1| transcriptional activator RfaH [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 183
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+ E +A + + G++ P + +R+G++V FP
Sbjct: 19 KKWYLAYCKPKEEARARAHLEAQ----GIESY-----YPMVEIEKLRRGKRVPVREPMFP 69
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ I + + T+K T + + G + ++ + +M++ ++ R +
Sbjct: 70 NYLFIYVDLEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQLMSRDDSDEARASYASL 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
G++V + GP A F I D +K R + V + + T
Sbjct: 130 PTQGDKVLIESGPLAGFEAIYLEPDGDK-RAILLVSLLNQETSSSFD 175
>gi|15828653|ref|NP_326013.1| transcription antitermination protein NusG [Mycoplasma pulmonis UAB
CTIP]
gi|14089595|emb|CAC13355.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Mycoplasma pulmonis]
Length = 196
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-------NSE 57
WY++ N EK+ +E+I ++ L+ ++ I E +S ++ K ++
Sbjct: 6 WYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDSYKTTK 65
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAV 114
+ + GY+ I+ V+T++ + +++T V G +G+ G P+P++ + + ++ +
Sbjct: 66 KNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEEETKKE 125
Query: 115 QRPVSSVF---FEVGERVCVSDGPFASFNGI--VKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ S+ F G V + DGPF + + +K + EK +E+ G+ ++
Sbjct: 126 EEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSVDTQID 185
Query: 170 YNQVEKI 176
+ ++ I
Sbjct: 186 HKHLKLI 192
>gi|320157066|ref|YP_004189445.1| transcriptional activator RfaH [Vibrio vulnificus MO6-24/O]
gi|319932378|gb|ADV87242.1| transcriptional activator RfaH [Vibrio vulnificus MO6-24/O]
Length = 168
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ ++ L++ E P+ V + +G++ FP
Sbjct: 2 KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQTKSEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G P + I + + Q +
Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAQPKELQGDLIYELKLLEQEGHQSALQGS 112
Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ + V G FA I + D E R + V + + PV + + +E
Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165
>gi|150388252|ref|YP_001318301.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|150389724|ref|YP_001319773.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|150392051|ref|YP_001322100.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149948114|gb|ABR46642.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149949586|gb|ABR48114.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149951913|gb|ABR50441.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 162
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
V SN E KA + + + ++ +P + R+G + ++ F GY+ +
Sbjct: 2 HVKSNEEMKAKKLVEKEIED-------IKVIVPQRIIPEKRQGETRHVKKILFTGYLFLN 54
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
+ Y+ +K P + FLG E P + E++ ++ +S V + G +
Sbjct: 55 VELDVDTYYKLKRIPSIHRFLGL-EKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEGNK 113
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V V GP G + VD+ K R V + + G V+L ++
Sbjct: 114 VQVVSGPLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIK 159
>gi|212634401|ref|YP_002310926.1| transcriptional activator RfaH [Shewanella piezotolerans WP3]
gi|212555885|gb|ACJ28339.1| Transcriptional activator RfaH [Shewanella piezotolerans WP3]
Length = 174
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 18/180 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ + E IP+ G+ FP
Sbjct: 2 KAWYLLYCKPRGEARAQQNLALQ---------EIETYIPTYPEEKTHNGKVTVRRVSLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
Y+ I I +T VI +G E +P+ + I I + + +
Sbjct: 53 SYLFIHFDPQVTSVSRIHNTRGVIRIVGCKELMTPIDEGVIGAIKAREHKWINELLPETR 112
Query: 122 -------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G++V DGPFA GI + + EK R +V I G+ V + + V+
Sbjct: 113 CKEELVCPVKSGDKVKFVDGPFAELEGIFQEKNGEK-RCYVLFDIMGKQQRVSVDRSTVK 171
>gi|210631838|ref|ZP_03297080.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279]
gi|210159958|gb|EEA90929.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279]
Length = 192
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 4/175 (2%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY++QV E IG + +S L+ E+ P +GR V ++
Sbjct: 1 MRVQWYVIQVMKGREDSMASLIGRVVPKS----LLQEVFSPKYETEIKVRGRWVPVQKTL 56
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGY++ + + ++D P+ L G P+ +E+E I + + S
Sbjct: 57 LPGYLIAVTNDPEGLEAVLRDLPEFARLLAQGNEFVPLAPAEVEVIGSFTSPGKRVVPMS 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + G+RV V+ GP +VK + KS +EV + GRV + + K
Sbjct: 117 IGVKDGDRVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171
>gi|37679190|ref|NP_933799.1| transcriptional activator RfaH [Vibrio vulnificus YJ016]
gi|37197933|dbj|BAC93770.1| transcription antiterminator [Vibrio vulnificus YJ016]
Length = 168
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ ++ L++ E P+ V + +G++ FP
Sbjct: 2 KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQIKSEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G +P + I + + Q +
Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHQSALQGS 112
Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ + V G FA I + D E R + V + + PV + + +E
Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165
>gi|114769689|ref|ZP_01447299.1| transcriptional antitermination protein, putative [alpha
proteobacterium HTCC2255]
gi|114549394|gb|EAU52276.1| transcriptional antitermination protein, putative [alpha
proteobacterium HTCC2255]
Length = 166
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ W+I+Q N +A +++ + E +P + S + R +N+ R
Sbjct: 1 MSKEWFILQFKPNSHHQATKNLTRQ---------GFETFLPLTDITSRKTSRFINTTRPL 51
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+ I T +H I +T V + N + + +E++M + + + + +
Sbjct: 52 FPGYMFITFDRTKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVRCDLSS-KILPV 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G++V + GPFA+F V+ + + R+ V + + R T ++ + +E
Sbjct: 111 ENLKKGDQVKILHGPFANFIATVETYETD-QRIWVLMDLMSRKTKIQTPLDALE 163
>gi|27363666|ref|NP_759194.1| transcriptional activator RfaH [Vibrio vulnificus CMCP6]
gi|27359782|gb|AAO08721.1| transcriptional activator RfaH [Vibrio vulnificus CMCP6]
Length = 168
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ ++ L++ E P+ V + +G++ FP
Sbjct: 2 KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQTKSEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G +P + I + + + +
Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHESALQGS 112
Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ + V G FA I + D E R + V + + PV + + +E
Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165
>gi|77459037|ref|YP_348543.1| transcription antitermination protein nusG [Pseudomonas fluorescens
Pf0-1]
gi|77383040|gb|ABA74553.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf0-1]
Length = 178
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P WY++Q +++A ++ + +++V + SERV+ +G++ + FP
Sbjct: 9 PNWYLLQCKPRQDERAHLNLLQQ------NYVVFHPQLVSERVI---RGKRQRVQESLFP 59
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+ D + ++ T V F+ P+ V + IEH+ + +
Sbjct: 60 GYLFIQLSRDDN-WAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSE-PDEA 117
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE + + GP A G+ + RV + + R PV L + +E+
Sbjct: 118 LKPGENLQIVSGPLAPLEGVFLGLHG-TDRVMILLQFLNREQPVCLPLSVIER 169
>gi|149003856|ref|ZP_01828684.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS69]
gi|147758190|gb|EDK65193.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS69]
Length = 103
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 71 MTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
MTD+ + +++TP V GF+ G P+P+ + EI I+ + VQ E+G+
Sbjct: 1 MTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEF--DFDVEIGQ 58
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V + DG FA + G + +D ++V + + +FG T E+ NQ+
Sbjct: 59 TVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 102
>gi|160901844|ref|YP_001567425.1| NusG antitermination factor [Petrotoga mobilis SJ95]
gi|160359488|gb|ABX31102.1| NusG antitermination factor [Petrotoga mobilis SJ95]
Length = 354
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---- 114
FPGYV ++ + + + + P V L G P + +E+ ++ +
Sbjct: 231 NLFPGYVFVEMMYIKETEELVSNLPYVSTILNIGGKPVKLNKNEVRFVLRVMGEEAYQKR 290
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
Q FE+GE V + +GPF F G +K+ D EK V V V +FGR T V L+ ++E
Sbjct: 291 QVKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFGRETTVTLSLGEIE 350
Query: 175 KIV 177
KI+
Sbjct: 351 KII 353
Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV--SVRKGRKVNSER 58
M WY++QVYS E K E++ R+ G + +I IP + S ++ +K+ E+
Sbjct: 1 MRKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIPEVDELNYSNKRVQKIYIEK 60
>gi|154686640|ref|YP_001421801.1| putative transcription antiterminator [Bacillus amyloliquefaciens
FZB42]
gi|154352491|gb|ABS74570.1| putative transcription antiterminator [Bacillus amyloliquefaciens
FZB42]
Length = 176
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY + V S E+ + + R D IP ++V + G K + ++ FP
Sbjct: 1 MKWYALFVESGKEETVQKFL-----RLQFDEQALYSIIPKKKVTERKAGIKYEALKKMFP 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP--------SPVTDSEIEHIMNQVEAAV 114
GYVL K MT++ +H IK+ P + G + + D EI I+ +
Sbjct: 56 GYVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGD 115
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
S V+ E +V V+ GP GI+K +D+ K R + + G V + +
Sbjct: 116 TVDYSKVYIE-NSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLS 174
Query: 175 K 175
K
Sbjct: 175 K 175
>gi|311695295|gb|ADP98168.1| transcriptional activator RfaH [marine bacterium HP15]
Length = 126
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
++ G++ FPGY+ + TD ++ ++ T V+ +G P+P++D+ I+HI
Sbjct: 3 KIKGGKRSKKLEPLFPGYLFVNLEQTDPMWSKLRSTRGVLRIVGFANKPAPISDAVIQHI 62
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ +++ ++ + G+ V +S+GPF N I + D E R V V + +
Sbjct: 63 KDSLDSVAEQG----GIKPGQAVQLSEGPFEGINAIFQAYDGE-ERAIVLVSFMQKQQSI 117
Query: 167 ELAYNQVEK 175
+ + ++K
Sbjct: 118 RVPVSAIKK 126
>gi|226497218|ref|NP_001151355.1| transcription termination factor nusG family protein [Zea mays]
gi|195646054|gb|ACG42495.1| transcription termination factor nusG family protein [Zea mays]
Length = 336
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 53/226 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59
+ P+W++V+V V+ + +SR + +I PS +V + G +
Sbjct: 101 LGPQWWLVRVSMAPGTDYVDLLTKAISRR-YSEVPFKIYNPSIQVKRRLKSGAISVKSKP 159
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111
G V + + +++ I+DT GF+G + P P+ E+E I+ + +
Sbjct: 160 LHAGLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDEVESIIREEK 219
Query: 112 AAVQRPVSSVF-------------------------------------------FEVGER 128
+R F G
Sbjct: 220 EEQERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTRHSAFSPGAT 279
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V V GPFA F G + V+ + + V++ +FG+ + V+L ++Q+E
Sbjct: 280 VHVLSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIE 325
>gi|218778281|ref|YP_002429599.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
gi|218759665|gb|ACL02131.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
Length = 178
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 16/175 (9%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T +WY + S E + R E P R++S RK R+ + F
Sbjct: 9 TKQWYALYTKSRHEACVNNYLAARS---------IESFYPQMRILSRRKDRRKMIDVPMF 59
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE--HIMNQVEAAVQRPVS 119
PGY+ ++A + + + +I P + +G + + I I++Q EA P
Sbjct: 60 PGYLFVRAALRSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSLRIVSQKEALETGPC- 118
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ V + GPFA G+ ++ ++ V + G+ VE+ V+
Sbjct: 119 ---YHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169
>gi|308048785|ref|YP_003912351.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799]
gi|307630975|gb|ADN75277.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799]
Length = 163
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 12/165 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E A + R +P V +++G++ FP Y
Sbjct: 4 WYLLYCKGKKEATARAYLEQRNLS---------CFLPEAEVECIKRGKRTLVTAPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ T+ P V + T +P+ + + I +++ A + +
Sbjct: 55 LFVRFDPFQTPITTVMSAPGVASVVRTDGKIAPIETAIVVAIRERLKRAAVSLMDAPT-- 112
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
G+ V + DGPFA+ GI + D +K + + + I G+ P+ +
Sbjct: 113 AGDTVEILDGPFANLQGIFREPDGDKRSL-LLLEILGQQKPISME 156
>gi|256422616|ref|YP_003123269.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256037524|gb|ACU61068.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 174
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY+ +N E+K + I E +P R R E FP
Sbjct: 14 KWYVAYTRANFERKVAKDIV---------DQQIEHYLPLRRETRKWSDRLKQIEVPLFPN 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K + KV I P V+ + P V++ EI+HI ++E Q ++
Sbjct: 65 YIFVKIKLQHKVN--ILGIPGVLSLVSFSGQPVSVSEREIQHI-RKIEERGQDIALEYYY 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+RV ++ G F GI+ + R +++ + VE+ +Q+E+I
Sbjct: 122 CVGDRVRITQGIFTGMEGILLRKSG-QMRFVLKLPAISQAVSVEIEGDQLERI 173
>gi|307308731|ref|ZP_07588427.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
gi|306900737|gb|EFN31348.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
Length = 215
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY + V E S+ E +P ERVV VR GR S+ +F
Sbjct: 47 SARWYCLLVKKGREFDVENSLREANV---------EAFMPRERVVRVRHGRIFESDVPYF 97
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+L++ V + + +H ++ VI +G V D + + ++ + P +
Sbjct: 98 PSYMLVRCVPSPEAFHGLRRHRNVIDIVGGASGYHIVRDENV-AMFKRICEDAEAPRVAT 156
Query: 122 F--FEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVVIFGRVTPVE 167
F+ G+R + GPFA F IV V +++ V + + GR ++
Sbjct: 157 DKTFKEGDRADIVLGPFAGFMCIVTAVKWCRQAKASVRIDVHGRPFDID 205
>gi|297184776|gb|ADI20886.1| transcription antiterminator [uncultured gamma proteobacterium
EB080_L93H08]
Length = 85
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
PSP+ + E I+NQ E + P ++ ++ GE V V DGPF FNG+V+NV+ EK+++
Sbjct: 4 PSPIPEHEALRILNQAEDSKGMPRPTITYQPGEVVRVIDGPFNDFNGVVENVNYEKNKLS 63
Query: 155 VEVVIFGRVTPVELAYNQVEK 175
V V I GR TPV+L +NQVEK
Sbjct: 64 VAVQILGRPTPVDLNFNQVEK 84
>gi|114564008|ref|YP_751522.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400]
gi|114335301|gb|ABI72683.1| transcription antitermination protein nusG [Shewanella
frigidimarina NCIMB 400]
Length = 170
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ L + E +P + + + FP
Sbjct: 2 KSWYLLYCKPRHEVRAQQNLA-------LQEV--ESYLPMITQQKMVRNKPQMVTAPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ I I +T +G E+ +P+ D I + +V+ V V
Sbjct: 53 SYLFIYFDPLITSVSKIHNTRGANRIVGCREDMTPIDDRIISALKRRVQGYVPEEVK--P 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V DGPF I + +K R HV I G+ + + ++ +
Sbjct: 111 LGKGDKVKFVDGPFKDLEAIFDENNPDK-RCHVLFNIMGQQKRILVELTNLQAV 163
>gi|210633806|ref|ZP_03297853.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279]
gi|210159066|gb|EEA90037.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279]
Length = 217
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V V + E ++ + R + +V E P R G ++ E+ PGY
Sbjct: 37 WYVVNVPTGRE----SALCKVIERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKTLLPGY 92
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V++ +V +++ P+ L GE+ P+ D E I + S+
Sbjct: 93 VIVATEQIGRVKRLLREVPEYTRVLNMGESFVPLADGERAWIDAFTRKGERCVPMSMGVM 152
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V V GP +K+V+ +S +VE+ I GR ++ V +
Sbjct: 153 EGDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSR 203
>gi|163783795|ref|ZP_02178779.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
gi|159880948|gb|EDP74468.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
Length = 101
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
K+ I+ TP + + G P+ + E+ I+ QV+ V+ V FE G++V V +
Sbjct: 1 KLLRAIEKTPHIYKPVLVGGKVVPLKEEEVNRILEQVQKGVK--TRKVEFEKGDQVRVIE 58
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GPF +F G V+ V E+ ++ V + IFGR+TPVEL + QVEKI
Sbjct: 59 GPFMNFTGTVEEVHPEREKLTVLISIFGRLTPVELDFTQVEKI 101
>gi|90417218|ref|ZP_01225145.1| transcriptional activator RfaH [marine gamma proteobacterium
HTCC2207]
gi|90330994|gb|EAS46255.1| transcriptional activator RfaH [marine gamma proteobacterium
HTCC2207]
Length = 169
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q S E +AVE++ + +S P +V + +G +V E FPGY
Sbjct: 4 WFLLQTKSKQEGRAVENLERQGVKS---------FCPMIKVEKLSRGSRVVKEEALFPGY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + T++ T V F+ + P V +S I +M + +A VSS+
Sbjct: 55 LFVNFDQSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRTDAGNDETVSSLP-S 113
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
GER+ + DGPF N + D ++ R V + + + L + +
Sbjct: 114 KGERLQIIDGPFRGLNAVFSQPDGDR-RAIVLINLLNQQVSASLPFASL 161
>gi|21673456|ref|NP_661521.1| NusG/RfaH family transcriptional regulator [Chlorobium tepidum TLS]
gi|21646560|gb|AAM71863.1| transcriptional regulator, NusG/RfaH family [Chlorobium tepidum
TLS]
Length = 200
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 10/150 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + + + S +P + RK E GY
Sbjct: 11 WYAVYVRSRYEKKVHQYLLEKGLSS---------FLPLIETLRQWSDRKKRVEEPLIRGY 61
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + + H + +T V+ F+G G+ PS +++ +I+ + + +
Sbjct: 62 VFVNINYHKEHVH-VLETDGVVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIP 120
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
VG++V V GPF G+VK E+ +
Sbjct: 121 VGKKVRVLAGPFKDMEGVVKKEGREERLLV 150
>gi|329755796|gb|AEC04347.1| NusG antitermination factor [Chitinophaga sancti]
Length = 174
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y EKK + L ++ +P V R +E FP
Sbjct: 14 KWYVLYTYPLFEKKIGRQLA-------LIDIIH--YLPVRTEVRKWSDRLKRTEVPLFPN 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K + +K I P V+ F+ PV++ +I I Q+EA+ Q +
Sbjct: 65 YIFVKTNLLNKT--PILSIPGVVRFVSIEGKAIPVSEDDINKI-RQIEASRQDVEIESVY 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV--IFGRVTPVELAYNQVEKI 176
G+++ + +G F+ G + + +R+ V + + + VE++ +EK+
Sbjct: 122 NTGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKL 173
>gi|75675741|ref|YP_318162.1| transcription antitermination protein nusG [Nitrobacter
winogradskyi Nb-255]
gi|74420611|gb|ABA04810.1| Transcription antitermination protein nusG [Nitrobacter
winogradskyi Nb-255]
Length = 234
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE-R 58
M P+ W+I++ + CE+K + R + L+ + +RVV G E +
Sbjct: 30 MQPKYWFILRTHPGCERKVMREFERRNISA-YCPLIAK----QQRVVRRVHGSSWTYEIK 84
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--- 115
R + + V D V G+L G + + SE E ++V
Sbjct: 85 RLVQVPLFPQLVFVPDFERVPADIGGVSGWLRFGGWRARIP-SEREATSDRVACMADIHA 143
Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ + FE+G V + DGPF F+G ++ +D K R+ V + IFGR++P E
Sbjct: 144 LVAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLDS-KGRLKVAIEIFGRLSPTE 202
Query: 168 LAYNQVE 174
++ Q+E
Sbjct: 203 MSEAQIE 209
>gi|145220255|ref|YP_001130964.1| transcription antitermination protein nusG [Prosthecochloris
vibrioformis DSM 265]
gi|145206419|gb|ABP37462.1| transcription antitermination protein nusG [Chlorobium
phaeovibrioides DSM 265]
Length = 169
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 10/160 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ P WY V V S EKK + + + S +P + RK
Sbjct: 5 LNPHWYAVYVRSRYEKKVHQWLEEKELTS---------FLPLLETMRQWSDRKKKVYEPL 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
F GYV + M + + + +T V+ F+G G NPS +++ +IE + V +
Sbjct: 56 FRGYVFVNIDMKHE-HVKVLETEGVVKFIGIGRNPSVISERDIEWLRTLVREPDALHQTV 114
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
VG +V V GPF GIV E + I
Sbjct: 115 STMPVGRKVRVLAGPFKDLEGIVVKQGREDRMIIFFDSIM 154
>gi|89073226|ref|ZP_01159756.1| transcriptional activator RfaH [Photobacterium sp. SKA34]
gi|89050936|gb|EAR56400.1| transcriptional activator RfaH [Photobacterium sp. SKA34]
Length = 165
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ S E+ + L R G+ ++ V V +G+++ S F
Sbjct: 2 KDWYLLYCKRSEQERAVIN-----LERQGVGCYYPQV-----TVKKVSRGKRIESIEPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YV ++ Y +++ T V F+ G P V + I ++M ++ + + S+
Sbjct: 52 PSYVFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEKHQRLLSI 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ + + G F I + D EK R + + + G+ V + + K
Sbjct: 112 LPQPGDTLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSIENTDLLK 164
>gi|255283968|ref|ZP_05348523.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
gi|255265550|gb|EET58755.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
Length = 183
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV + E++ ++S + L+ + IP V +G ++ FPGY
Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGEWKTQKQILFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + ++ +K + +GTG P++++E E ++ Q S
Sbjct: 73 VFVVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGE-EQVVQMSEGII 131
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G +V + GP G ++ +D K + +E+ + G + V++ V K
Sbjct: 132 TGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182
>gi|149925742|ref|ZP_01914006.1| NusG antitermination factor [Limnobacter sp. MED105]
gi|149825859|gb|EDM85067.1| NusG antitermination factor [Limnobacter sp. MED105]
Length = 179
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR-KVNSERR 59
M +WY++ E A+E++ + + P RV + G+ V
Sbjct: 13 MA-QWYVMYTKPRQETVALENLQRQNYN---------VFFPQARVQKRKTGQGTVQVVEP 62
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+ I+ + + ++ T + + G PS V IE I +Q+++ +
Sbjct: 63 LFPRYMFIQLEVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLL 122
Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ EVG V V++GPF G + + RV V + + G VELA +Q++K
Sbjct: 123 KLNELEVGGEVRVAEGPFEGMMGKIAARKSD-QRVIVLLNVLGAERSVELAQSQLDK 178
>gi|115456311|ref|NP_001051756.1| Os03g0825500 [Oryza sativa Japonica Group]
gi|15042831|gb|AAK82454.1|AC091247_21 putative transcription factor [Oryza sativa Japonica Group]
gi|108711839|gb|ABF99634.1| KOW motif family protein, expressed [Oryza sativa Japonica Group]
gi|108711840|gb|ABF99635.1| KOW motif family protein, expressed [Oryza sativa Japonica Group]
gi|113550227|dbj|BAF13670.1| Os03g0825500 [Oryza sativa Japonica Group]
gi|125546265|gb|EAY92404.1| hypothetical protein OsI_14139 [Oryza sativa Indica Group]
Length = 330
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 53/226 (23%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
P+W++V+V V+ + +SR L +I PS +V + G +
Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRR-YPELSFKIYNPSIQVKKRLKNGSISTKSKPLH 162
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEAA 113
PG V + + +V+ I+DT GF+G + P P+ E+E I+ + +
Sbjct: 163 PGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEEVESIIREEKEE 222
Query: 114 VQRPVSSVF-------------------------------------------FEVGERVC 130
+R F G V
Sbjct: 223 QERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVH 282
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GPF F G + V+ + + +++ +FG+ + V+L ++Q+E +
Sbjct: 283 VLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 328
>gi|110597105|ref|ZP_01385394.1| transcription antitermination protein NusG:KOW [Chlorobium
ferrooxidans DSM 13031]
gi|110341296|gb|EAT59761.1| transcription antitermination protein NusG:KOW [Chlorobium
ferrooxidans DSM 13031]
Length = 194
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 18/167 (10%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY V V S CEK+ + + + +P RK F
Sbjct: 6 SVRWYAVYVRSRCEKQVYRMLAEKQITT---------FLPLLETWKQWSDRKKKVSEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GYV + M + + +T V+ F+G G+ PS + + +I+ + V +
Sbjct: 57 RGYVFVNIDMRHD-HLPVLETEGVVKFIGIGKVPSVIAEKDIDWLRKLVREPEAIGRTVD 115
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160
VG++V V GPF F G+V E V VEV IF
Sbjct: 116 SIPVGQKVKVLAGPFKDFEGVVLKHGRETRLVVFFDSIMQGVEVSIF 162
>gi|28897599|ref|NP_797204.1| transcriptional activator RfaH [Vibrio parahaemolyticus RIMD
2210633]
gi|153838389|ref|ZP_01991056.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810]
gi|260363316|ref|ZP_05776183.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030]
gi|260878245|ref|ZP_05890600.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034]
gi|260895439|ref|ZP_05903935.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466]
gi|260903333|ref|ZP_05911728.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037]
gi|28805811|dbj|BAC59088.1| putative transcriptional activator RfaH [Vibrio parahaemolyticus
RIMD 2210633]
gi|149748248|gb|EDM59107.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810]
gi|308088632|gb|EFO38327.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466]
gi|308090167|gb|EFO39862.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034]
gi|308107999|gb|EFO45539.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037]
gi|308113596|gb|EFO51136.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030]
gi|328473416|gb|EGF44264.1| transcriptional activator RfaH [Vibrio parahaemolyticus 10329]
Length = 166
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ ++ L++ E P+ V + +G++ E FP
Sbjct: 2 KRWYLLYCKRG---------EQIRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + + +++ T V+ F+ G P V + + + ++ +S
Sbjct: 53 CYVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELKQLEKCCTEKNISEC 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G++V V G FA + I + D EK R + V + + PV + ++
Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMISKRVPVSIDNTDLD 164
>gi|320161352|ref|YP_004174576.1| putative RfaH family transcriptional regulator [Anaerolinea
thermophila UNI-1]
gi|319995205|dbj|BAJ63976.1| putative RfaH family transcriptional regulator [Anaerolinea
thermophila UNI-1]
Length = 178
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +WY +Q N E +++ + G+ E+ P RV V + R +
Sbjct: 1 MSKKWYAIQSKPNKE----QALCEQFQSRGI-----EVFYPQIRVNPVNPRARKI--RPY 49
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+ + + + I+ P G + P+ V D+ IE I +V+ +
Sbjct: 50 FPGYLFVHVDLDEVGLSVIRWIPFARGVVSFSNEPASVPDNLIEAIRRRVDEVNRAGGEL 109
Query: 121 VF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF-GRVTPVELAYNQVEKI 176
+ + GE V + +GPFA + I K RV V + + R PVE+ ++ +
Sbjct: 110 LETLKPGEPVLIQEGPFAGYEAIFDVRLSGKERVRVLIQLLSQRYIPVEMQVGSLKPL 167
>gi|281418039|ref|ZP_06249059.1| NusG antitermination factor [Clostridium thermocellum JW20]
gi|281409441|gb|EFB39699.1| NusG antitermination factor [Clostridium thermocellum JW20]
Length = 178
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V S E+ + L ++ IP + V+ R G R FPGY
Sbjct: 3 WYVLFVKSGRERNVERYLKKELKAD-----ISTPFIPLQEVLFKRSGSVKKEIRLLFPGY 57
Query: 65 VLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V I+++++ +++ + I + +I L + + +SE + +++ S
Sbjct: 58 VFIESILSGNEFLEEINYLIDRSSDIISLLKYSDTEIAMRESERQRLLSLCNNEHCIEAS 117
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+R+ + +GP IVK V+ K +E+ I G V +A V+K+
Sbjct: 118 YGIIE-GDRIRIFEGPLKGMESIVKKVNRHKREALIEIEIMGDARLVTVALEIVKKV 173
>gi|269960688|ref|ZP_06175060.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834765|gb|EEZ88852.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 166
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + +A + + + E P+ V + +G++ E FP
Sbjct: 2 KRWYLLYCKRGEQVRAKQHLENQ---------GVECFYPTFEVEKILRGKRQKVEEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + + +++ T V+ F+ G P + + + + ++
Sbjct: 53 CYVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEIQGDLVYELKQLDKCVDEQASDEC 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G++V V G FA + I + D EK R + V + + PV + + ++
Sbjct: 113 MPQPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDLD 164
>gi|91225922|ref|ZP_01260891.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01]
gi|269966032|ref|ZP_06180123.1| transcriptional activator RfaH [Vibrio alginolyticus 40B]
gi|91189572|gb|EAS75848.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01]
gi|269829339|gb|EEZ83582.1| transcriptional activator RfaH [Vibrio alginolyticus 40B]
Length = 166
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + +A + + + E P+ V + +G++ E FP
Sbjct: 2 KRWYLLYCKRGEQVRAKQHLENQ---------GVECFYPTVEVEKILRGKRQKVEEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + +++ T V+ F+ G P V + +M + VS
Sbjct: 53 CYVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNDNTVSEC 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+++ V G FA + I + D EK R + V + + PV + + ++
Sbjct: 113 MPKPGDQIRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDLD 164
>gi|332181491|gb|AEE17179.1| NGN domain-containing protein [Treponema brennaborense DSM 12168]
Length = 218
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 4/171 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y VQV + E+ + SI +L + + + P R++ R+G +VN FPGYV
Sbjct: 38 YAVQVRTLKEEAYIASISRQLEDTEIK---IQFLFPKRRLIIRRQGEQVNELMPLFPGYV 94
Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
I+ ++ ++Y+ + FL +N ++ ++ + + + S V+F+
Sbjct: 95 FIETEKLSTELYNVARSAKYFSRFLPNNQNICSLSGKDLAVLKHFIGFGAVAESSKVYFD 154
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+R+ V+ GP G + VD K R V++ ++LA++ + K
Sbjct: 155 ENDRIVVTSGPLHGLEGSIVKVDRRKHRAKVKLDFANECFLLDLAFDIIGK 205
>gi|255282325|ref|ZP_05346880.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
gi|255267273|gb|EET60478.1| putative transcription antiterminator [Bryantella formatexigens DSM
14469]
Length = 183
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV + E++ ++S + L+ + IP V +G ++ FPGY
Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGVWKTQKQILFPGY 72
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + ++ +K + +GTG P++++E E ++ Q S
Sbjct: 73 VFVVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGF-GGKEQVVQMSEGII 131
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G RV + GP G ++ +D K + +E+ + G + V++ V K
Sbjct: 132 TGSRVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182
>gi|262394904|ref|YP_003286758.1| transcriptional activator RfaH [Vibrio sp. Ex25]
gi|262338498|gb|ACY52293.1| transcriptional activator RfaH [Vibrio sp. Ex25]
Length = 166
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + +A + + + E P+ V + +G++ E FP
Sbjct: 2 KRWYLLYCKRGEQVRAKQHLENQ---------GVECFYPTVEVEKILRGKRQKVEEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + +++ T V+ F+ G P V + +M + + S
Sbjct: 53 CYVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNENTASEC 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+++ V G FA + I + D EK R + V + + PV + + ++
Sbjct: 113 MPKPGDQIRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDLD 164
>gi|125973877|ref|YP_001037787.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405]
gi|256004332|ref|ZP_05429314.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|125714102|gb|ABN52594.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405]
gi|255991766|gb|EEU01866.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
gi|316939925|gb|ADU73959.1| NusG antitermination factor [Clostridium thermocellum DSM 1313]
Length = 185
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V S E+K + + L+ ++ IP + ++ + G R FPGY
Sbjct: 3 WYVLFVKSGKERKVEQYLRKE-----LNADISIPFIPLQEILFKKAGSVKKEIRPLFPGY 57
Query: 65 VLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++++ +++ + I + +I L + + +SE + +++ S
Sbjct: 58 VFVESMLPGRDFLEEIKYLINRSSDIISLLKYSDTEIAMRESERQRLLSLCNNNYCIEAS 117
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G+++ + DGP +VK ++ + +E+ I G V V +A V K+
Sbjct: 118 YGIIE-GDKILIFDGPLKGMESLVKKINRHRREALIEIEIMGDVRLVTVALEVVRKV 173
>gi|328955784|ref|YP_004373117.1| NusG antitermination factor [Coriobacterium glomerans PW2]
gi|328456108|gb|AEB07302.1| NusG antitermination factor [Coriobacterium glomerans PW2]
Length = 181
Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 4/171 (2%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV+ E VE + + S LD + P G + PGY
Sbjct: 2 WYVIQVFKGRESAMVEYVKRMVPASVLDECFS----PRFETEIKVGGEWTRCVKTLLPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
++ A DK+ + T + + + G P+ + E I + + S+ +
Sbjct: 58 IIAIATGPDKLSRHLYGTLEFVRLVKQGGRFWPLQEEERNLIARFTKKGSRTVPMSIAVK 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V V GP G++K++D KS +EV I GR + + +
Sbjct: 118 DGDNVIVKSGPLMGHEGLIKSIDRRKSIATLEVEICGRKVRTRVGLGVLTR 168
>gi|167623413|ref|YP_001673707.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4]
gi|167353435|gb|ABZ76048.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4]
Length = 178
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 15/179 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ S E +A +++ + + +P+ + KG+ FP
Sbjct: 2 KAWYLIYCKSRGEARAQQNLALQQ---------IDTYLPTYPEEKLVKGQVSVRRVSLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-----EAAVQRP 117
Y+ I I +T VI +G E + + DS I I + E + Q
Sbjct: 53 SYLFINFDPEVTSVSKIHNTRGVIRIVGCKELMTSIDDSVIHAIKMREHKLLSEISSQSA 112
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E G++VC + GPF GI + EK R V + G+ V + + ++ +
Sbjct: 113 EPAPKMEQGDKVCFTKGPFVELEGIFDEANGEK-RCFVLFELMGKQQRVVVDRDVIKHV 170
>gi|56459699|ref|YP_154980.1| transcription antiterminator RfaH [Idiomarina loihiensis L2TR]
gi|56178709|gb|AAV81431.1| Transcription antiterminator RfaH [Idiomarina loihiensis L2TR]
Length = 165
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 15/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIV+ E++A+ ++ + + P V VR+G + + R FPGY
Sbjct: 9 WYIVRTKPKQEERAILNLENQ---------GFGVFAPELTVKKVRRGVRTSVVERMFPGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V +K + ++ ++ T V G L G+N V I+ + V + +
Sbjct: 60 VFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQMR-----GVDQLTDEQAPQ 114
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+G+ V + GPF F + +D E SR V + + +Y +++
Sbjct: 115 IGDTVEIQQGPFRGFLAKIVKLDGE-SRCFVMLEWMQKEVKANFSYKELQ 163
>gi|146340576|ref|YP_001205624.1| putative transcription antitermination protein NusG [Bradyrhizobium
sp. ORS278]
gi|146193382|emb|CAL77398.1| putative transcription antitermination protein NusG [Bradyrhizobium
sp. ORS278]
Length = 201
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 13/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI++ + +CE K +++ R + + +T+ S+ +R+G + ERR
Sbjct: 31 WYILRTHPHCEAKVMKAFRLR----NISAYLPVMTV-SKEFRRMRRGFEWI-ERRDVVSP 84
Query: 65 VLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
+++ AV+ ++ + + +G L GE +T + I ++E P S
Sbjct: 85 LILGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDI-RKIEDIANTPKSKR 143
Query: 122 F--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FEVG+ V V GPF F+ V+ +D + R+ V IFGR+TP+++ ++E +
Sbjct: 144 ARAFEVGQLVRVLSGPFRYFSARVERIDS-RGRLSVGAEIFGRITPIDIDEGEIEAV 199
>gi|90579282|ref|ZP_01235092.1| transcriptional activator RfaH [Vibrio angustum S14]
gi|90440115|gb|EAS65296.1| transcriptional activator RfaH [Vibrio angustum S14]
Length = 165
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ S E+ + LD + P V V +G+++ S F
Sbjct: 2 KDWYLLYCKRSEQERAVI----------NLDRQGVDCYYPQVTVKKVSRGKRIESIEPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YV ++ Y +++ T V F+ G P V + I ++M ++ + + S+
Sbjct: 52 PSYVFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEEHQRLLSM 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GE++ + G F I + D EK R + + + G+ V + + K
Sbjct: 112 LPLPGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSIENTDLLK 164
>gi|119358362|ref|YP_913006.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
gi|119355711|gb|ABL66582.1| transcription antitermination protein nusG [Chlorobium
phaeobacteroides DSM 266]
Length = 180
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 20/165 (12%)
Query: 5 WYIVQVYSNCEKKAVES-IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY V V S EKK + + L+ +P + RK F G
Sbjct: 9 WYAVYVRSRHEKKVHQLFLEKELTS----------FLPLLETMRQWSDRKKKVYEPLFRG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + M + + DT VI F+G G+ PS + +IE + V + +
Sbjct: 59 YVFVNIAMRRD-HIRVLDTDGVIKFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDAL 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160
G+ V V GPF F G+V E V VE+ IF
Sbjct: 118 PPGQLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEISIF 162
>gi|78187519|ref|YP_375562.1| NusG antitermination factor [Chlorobium luteolum DSM 273]
gi|78167421|gb|ABB24519.1| transcription antitermination protein nusG [Chlorobium luteolum DSM
273]
Length = 170
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVE-SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
+ P WY V V S EKK + + L+ +P V RK
Sbjct: 5 LDPHWYAVYVRSRYEKKVHQWMLEKELNS----------FLPLLETVRQWSDRKKKVYEP 54
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
F GYV ++ M + + + +T V+ F+G G NPS ++ +IE + V +
Sbjct: 55 LFRGYVFVQIDMKHE-HVKVLETEGVVKFIGIGRNPSVISPRDIEWLKTLVREPDALHQT 113
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
G++V V GPF G+V E+ V I
Sbjct: 114 VSSIPYGKKVRVLAGPFKDLEGVVVKEGREERLVVFFESIM 154
>gi|163802557|ref|ZP_02196449.1| transcriptional activator RfaH [Vibrio sp. AND4]
gi|159173640|gb|EDP58459.1| transcriptional activator RfaH [Vibrio sp. AND4]
Length = 166
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + +A + + + E P+ V + +G++ E FP
Sbjct: 2 KRWYLLYCKRGEQVRAKQHLENQ---------GVECFYPTLEVEKILRGKRQKVEEPLFP 52
Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + + +++ T V+ F+ G P V I + + +
Sbjct: 53 CYVFARFDYEKGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLIYELKQLDKCVDDHTDAKN 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+ V V G FA + I + D EK R + V + + PV + + ++
Sbjct: 113 MPKPGDEVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDLD 164
>gi|194335749|ref|YP_002017543.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
gi|194308226|gb|ACF42926.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
Length = 196
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + + + S +P RK F GY
Sbjct: 9 WYAVYVRSRYEKKVYQLLLEQGVVS---------FLPLLDTWKQWSDRKKRVSEPLFRGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + + + + DT V+ F+G G PS + +I+ + V V
Sbjct: 60 VFVNIDLVREKIR-VLDTEGVVKFIGIGRVPSVIVQRDIDWLKQLVREPDAIHRHVVSLP 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160
G+RV V GPF F G+V E V VEV IF
Sbjct: 119 AGQRVKVLAGPFKDFEGVVVKQGRESRLVVFFESIMQGVEVTIF 162
>gi|295106882|emb|CBL04425.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 162
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 4/164 (2%)
Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
+ E I S D ++ E +P V +G FPGY+++ +
Sbjct: 2 AGREFAVQRQIEQFAS----DDVLDECFVPQYEVQKHLRGEWRTCTAVLFPGYLIVVSDR 57
Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
++ +K P+ L P+ E+ I E + S G+++ V
Sbjct: 58 IAELQAQLKQIPQFASVLNNDGTFIPLEPHEVAWIDAFTEKEHRVIGMSEGVIEGDQIVV 117
Query: 132 SDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GP + G ++ ++ K ++E+ +FGR ++ V K
Sbjct: 118 LKGPLVNRTGWIRKINRRKRTAYLEIEMFGRTIQTKIGLGIVRK 161
>gi|189347084|ref|YP_001943613.1| NusG antitermination factor [Chlorobium limicola DSM 245]
gi|189341231|gb|ACD90634.1| NusG antitermination factor [Chlorobium limicola DSM 245]
Length = 184
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK R L+ V E +P RK F GY
Sbjct: 10 WYAVYVRSRYEKKV--------HRMFLEKEV-EAFLPLLETWRQWSDRKKKVSEPLFRGY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + M + + + DT V+ F+G G+ PS ++ +I+ I V
Sbjct: 61 VFVNIDMKAE-HIKVLDTDGVVKFIGIGKTPSVISSRDIDWIKKLVREPDAVRRIVASLP 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
G++V V+ GPF G+V E VV F R
Sbjct: 120 PGQKVMVTAGPFKGLEGVVVKEGRESR----LVVYFDR 153
>gi|313900768|ref|ZP_07834260.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
gi|312954438|gb|EFR36114.1| transcription termination/antitermination factor NusG [Clostridium
sp. HGF2]
Length = 170
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 73/174 (41%), Gaps = 6/174 (3%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+ QV S E+K VE +S+ ++ + IP G + + F
Sbjct: 1 MKWYVGQVRSGHERKIVEKCRTMISK----DVLQDCFIPEYIRKKKYMGNWHDVKDILFK 56
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GY+ + D++ +K P + +G + + P+ + E+ M S
Sbjct: 57 GYIFMITDQIDQLNIELKKIPDFVKVIGKKKADIFPLNEEEV-AFMKSFGKENHVVEMST 115
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE++ +++GP G + +D K ++++ +F + T ++ + K
Sbjct: 116 GFIQGEQIFITEGPLQGKEGQIIRIDRHKRVAYLQLSMFNKETTTKVGLEIISK 169
>gi|220924151|ref|YP_002499453.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219948758|gb|ACL59150.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 230
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTD------KVYHTIKDTPKVIGFLGTGENP 95
E VV+ R GR + + + +VY ++ V E P
Sbjct: 87 QEVVVAERSGRARKVRVPLLGRLLFVGLEPGEDASWLQEVYFEVEGVRHV------AEKP 140
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
V +++ + + + FEVGE V V+DGPFASFNG+V+ +D +
Sbjct: 141 VLVRGKQLDAFAGNLGGRGEPIRRADALTVEDFEVGEPVRVTDGPFASFNGLVEEIDNLE 200
Query: 151 SRVHVEVVIFGRVTPVELAYNQVEKI 176
+ V V IFGR TPV L +QVE++
Sbjct: 201 HTLKVAVSIFGRSTPVTLEPSQVERL 226
>gi|323454647|gb|EGB10517.1| hypothetical protein AURANDRAFT_62510 [Aureococcus anophagefferens]
Length = 544
Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WYI+Q Y E +I L V I +P+E+V S R + + E+ +
Sbjct: 51 WYILQCYVGNEVWCAATIEEILGKPEHVEQRSRVETILVPTEKVASTRGRKVYHKEKIIY 110
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------------NPSPVTDSEIE 104
PGYV + M +++ + PK+ F+G P P++ E +
Sbjct: 111 PGYVFCRLRMEQELWRVLTRVPKIANFVGIDAGMRNGIGEIVEGYKGAVTPVPLSAREAQ 170
Query: 105 HIMNQVEAAVQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+++ + ++ F +G+ V V DGP A G+V++V ++ V +
Sbjct: 171 MMLSVHLEGQEVGEDNIVDRFALGDVVAVLDGPSAGERGLVRSVKNDQLIVRLT 224
>gi|153834091|ref|ZP_01986758.1| transcriptional activator RfaH [Vibrio harveyi HY01]
gi|148869556|gb|EDL68551.1| transcriptional activator RfaH [Vibrio harveyi HY01]
Length = 166
Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + +A + + + E P+ V + +G++ E FP
Sbjct: 2 KRWYLLYCKRGEQVRAKQHLENQ---------GVECFYPTVEVEKILRGKRQKVEEPLFP 52
Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + + + +++ T V+ F+ G P V + + + + +
Sbjct: 53 CYVFARFDYEEGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVYELKQLDKCIDDQTDAEN 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G++V V G FA + I + D EK R + V + + PV + + ++
Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDLD 164
>gi|119947068|ref|YP_944748.1| NusG antitermination factor [Psychromonas ingrahamii 37]
gi|119865672|gb|ABM05149.1| NusG antitermination factor [Psychromonas ingrahamii 37]
Length = 169
Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 75/177 (42%), Gaps = 11/177 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ +W++V S E +A ++ G+ +I + + +K E
Sbjct: 1 MSLQWFVVYCKSREELRAQRNLE----NQGVYSFFPKIC-----KEKILRSKKKVVEEPL 51
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP Y+ + D+ + I+ T + F+ G + + + D +I+ I + V+S
Sbjct: 52 FPSYLFVNISKNDEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNS 111
Query: 121 VF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
++ G+++ + GPF I N+++ R + + I + + + ++K+
Sbjct: 112 EDVYQNGDKIEILSGPFKGLTAIF-NIEDGLERSMLLLKILNQDNNISFKNSALKKV 167
>gi|326487792|dbj|BAK05568.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 53/226 (23%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
P+W++V+V V+ I ++R + +I P+ +V + G +
Sbjct: 107 PQWWLVRVSMAPGTDYVDLITKAVARR-FSEVSFKIYNPAIQVKKRLKSGLISTKSKPLH 165
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIE--------- 104
PG V + + +++ I+DT GF+G + P P+ E+E
Sbjct: 166 PGLVFLYCTLNKELHDFIRDTEGCYGFIGATRGSIKRQIKKPKPIPAEEVESIIKKEKEE 225
Query: 105 ---------------------------------HIMNQVEAAVQRPVSSVF-FEVGERVC 130
I QV+ + + SS F +G V
Sbjct: 226 QEKVDKEFEDLENWNNVGSFSKPVEDSELMLINKIKKQVKKSTSKGASSNDTFTLGASVH 285
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GPFA F G + V + +V V++ +FG+ + V+L ++Q+E +
Sbjct: 286 VLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 331
>gi|330446599|ref|ZP_08310251.1| transcriptional activator RfaH [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490790|dbj|GAA04748.1| transcriptional activator RfaH [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 165
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY++ S E+ + LD + P V + +G++ S F
Sbjct: 2 KDWYLLYCKRSEQERAVI----------NLDRQGVDCYYPQVTVQKITRGKRAESIEPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P YV + Y +++ T V F+ G P V + I ++M ++A + + S+
Sbjct: 52 PNYVFVHFDPEVVSYTSVRSTRGVADFIRCGTFPQKVREELIYNLMMNEDSAEHQRLLSM 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ GE++ + G F I + D EK R + + + G+ V + + K
Sbjct: 112 LPQPGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSVENTDLLK 164
>gi|323483116|ref|ZP_08088508.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum
WAL-14163]
gi|323403536|gb|EGA95842.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum
WAL-14163]
Length = 249
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 24/191 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV E+K E I ++S ++ E IP + V +GR E FPGY
Sbjct: 50 WYVIQVQGGQEEKTAELIRSQVSAHVME----ECFIPKKERVKKFRGRWQRVEEILFPGY 105
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSE---IEHI-------------- 106
V ++++ +K+ ++ L G P++ E I+ I
Sbjct: 106 VFTVTDKPEELFLELKNVLRLTKILQDGAFYFIPLSKEEETLIQSIGDNCHITRISRVQV 165
Query: 107 MNQVEAAVQRPVS--SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
++E A + V + E G + + DGP + G + + K V++ G
Sbjct: 166 KKKIEPAAKTEVVFNNRMLESGREIMIIDGPLKNQEGRIVKYNLHKREATVKLRFMGNEM 225
Query: 165 PVELAYNQVEK 175
+ LA VE+
Sbjct: 226 ELRLAIELVEE 236
>gi|114319257|ref|YP_740940.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
gi|114225651|gb|ABI55450.1| transcription antitermination protein nusG [Alkalilimnicola
ehrlichii MLHE-1]
Length = 177
Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E+ A +++G R G + + RVV R R+V FP Y
Sbjct: 15 WYLIYTKPRQEEAARDNLG----RQGFHAWLPRV-----RVVKRRGTRRVPVVEPMFPRY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFF 123
+ ++ + + I T V + G P+ V + + + + +S
Sbjct: 66 LFVELDSAYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQP 125
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V+ G FA + + + + RV V + + G+ + V L + ++ +
Sbjct: 126 RAGDTVRVAHGAFAGYEAVFQARSG-RERVLVLLEVAGKQSRVTLPADDIDPV 177
>gi|149189138|ref|ZP_01867426.1| transcriptional activator RfaH [Vibrio shilonii AK1]
gi|148837101|gb|EDL54050.1| transcriptional activator RfaH [Vibrio shilonii AK1]
Length = 163
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 13/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ ++ L++ E P V + +G++ N + FP
Sbjct: 2 KRWYLLYCKRG---------EQARAKMHLENQGLECYYPEISVEKILRGKRQNVKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV +K + T++ T V+ F+ G P + I + + V P +
Sbjct: 53 SYVFVKFDYEVGPSFTTVRSTRGVVDFIRFGAQPKEINGDLIFELRSMVHC--DEPDCAD 110
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ GE V V G FA I + D E +R + V + + PV +
Sbjct: 111 LPDKGECVRVIGGQFAGIEAIFQEADGE-ARSIMLVNLINKQVPVSID 157
>gi|156973628|ref|YP_001444535.1| transcriptional activator RfaH [Vibrio harveyi ATCC BAA-1116]
gi|156525222|gb|ABU70308.1| hypothetical protein VIBHAR_01331 [Vibrio harveyi ATCC BAA-1116]
Length = 166
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + +A + + + E P+ V + G++ E FP
Sbjct: 2 KRWYLLYCKRGEQVRAKQHLENQ---------GVECFYPTVEVEKILHGKRQKVEEPLFP 52
Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
YV + + + +++ T V+ F+ G P + + + + + +
Sbjct: 53 CYVFARFDYEEGPNFTSVRSTRGVVDFVRFGVQPKEIQGDLVYELKQLDKCIDDQTDAES 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G++V V G FA + I + D EK R + V + + PV + + ++
Sbjct: 113 MLKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDLD 164
>gi|307321395|ref|ZP_07600793.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
gi|306892940|gb|EFN23728.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
Length = 221
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 13/178 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SERRF 60
W ++Q + E K VE+I L E +P+++ VR+ ++ ER
Sbjct: 53 KSWIVLQTMTGRE-KIVENI--------LGQAGVEALVPTKKAPDVRRRGRIIEGQERPV 103
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYV++ AV++ + ++ V+G +G E P + I + A
Sbjct: 104 MRGYVMVHAVLSPAALNGLRRVEHVVGIVGGAERPWCADAQSVNMIKALSKKANAADEEK 163
Query: 121 V-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
V FE+GERV +GPF G+V VD EK VEV+I G PV + + K+
Sbjct: 164 VLPFELGERVVFREGPFYLLGGVVIAVDGEKFDARVEVMILGGHVPVHNVPLEILAKV 221
>gi|220926326|ref|YP_002501628.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219950933|gb|ACL61325.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 218
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 50 KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEH 105
GR+ + + V D ++ P V L P + + +
Sbjct: 89 NGRRRIVREPLLRRLIFVG-VRDDAELRRVEAHPGVEQVLFREGRAVVIPPAMLQAFADA 147
Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
+ V+++ F +G+ V V++GP A GIV+ VD + R V V +FGR TP
Sbjct: 148 LTGHTGEGEAEAVAALLFALGDAVRVTEGPLARLPGIVEAVDPHRRRYRVAVEMFGRATP 207
Query: 166 VELAYNQVEK 175
V+L +Q+E+
Sbjct: 208 VDLDEDQIER 217
>gi|126667149|ref|ZP_01738123.1| transcriptional activator RfaH [Marinobacter sp. ELB17]
gi|126628305|gb|EAZ98928.1| transcriptional activator RfaH [Marinobacter sp. ELB17]
Length = 143
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
L + P V +R G++ F GY+ I + V+ ++ T VI
Sbjct: 1 MHLQNQDIPCFYPKVMVEKLRSGKRSCKLEALFSGYIFINLSQLNPVWSKLRSTRGVIRI 60
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
+G G P PV D I+H+ ++ + S+ + G+ V V++GPFA I + D
Sbjct: 61 VGFGGKPLPVKDEVIDHLRASLD----KVASAGGIKSGDDVDVAEGPFAGMRAIFQCYDG 116
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVE 174
+ R V + + + + + ++
Sbjct: 117 D-ERAIVLIEFMQKSQRISVPISSLK 141
>gi|119775400|ref|YP_928140.1| transcriptional activator rfaH [Shewanella amazonensis SB2B]
gi|119767900|gb|ABM00471.1| transcriptional activator rfaH, putative [Shewanella amazonensis
SB2B]
Length = 167
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 10/175 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A +++ S L+ + + + V G SE FP
Sbjct: 2 KAWYLIYCKPRNEMRAQQNL----SMQNLETYLPK----HRKQVKASGGAVSVSESVLFP 53
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ +I T V +G E +P+ D+ I + + E V++
Sbjct: 54 NYLFVQFDPEVTSVRSIHATRGVSRIVGCSEQMTPIDDALIRA-LKRKELQVEKLACEKP 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GERV GPF+ I D K R V G+ +++ + + +I
Sbjct: 113 LAAGERVKFCAGPFSDLEAIFLESDGNK-RCQVLFEFMGQQKQLDVESSSIVRIC 166
>gi|295105769|emb|CBL03312.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
Length = 532
Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ QV + E + +S ++ E +P + +G + R FPGY
Sbjct: 2 WYVAQVQAGRESATRDLCLRLVSS----DVLEECFMPEYETMWRVRGEWKLARRLLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ +++ + P I LG EN P+T E + ++ ++ S +
Sbjct: 58 LFFVTGDAEELNKELLRVPLPIRLLGNEENSFFPLTKKEQDWFLSFMD-GEHIVRMSEGY 116
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
G++V V+ GP F G ++ +D K R
Sbjct: 117 ITGDKVTVTRGPLMGFEGDIRKIDRHKRRA 146
>gi|170726005|ref|YP_001760031.1| transcriptional acivator RfaH [Shewanella woodyi ATCC 51908]
gi|169811352|gb|ACA85936.1| transcriptional acivator RfaH [Shewanella woodyi ATCC 51908]
Length = 179
Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 23/189 (12%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
MT + WY++ E +AV ++ + + +P+ KG
Sbjct: 1 MTMKAWYLLYCKPRGEARAVHNLTLQN---------IDTYLPTIGEEKRVKGEVSIKRIP 51
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------- 112
FPGY+ I I T V +G E + + DS I I +
Sbjct: 52 LFPGYLFINIDPQVTSVARIHSTRGVGRIVGCNELMTSIDDSIIHSIRLREHKLLSELLP 111
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
S+V G++V ++GPFA GI +K R HV I G+ V
Sbjct: 112 ASELSQKCDGSSTVEINPGDQVKFTEGPFADLEGIFAEKSGDK-RCHVLFEIMGQKKRVS 170
Query: 168 LAYNQVEKI 176
+ + ++ +
Sbjct: 171 VPRDSIKPV 179
>gi|294140235|ref|YP_003556213.1| transcriptional activator rfaH [Shewanella violacea DSS12]
gi|293326704|dbj|BAJ01435.1| transcriptional activator rfaH, putative [Shewanella violacea
DSS12]
Length = 180
Score = 97.5 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 25/189 (13%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +AV ++ + E +P+ KG+ + FP
Sbjct: 2 KAWYLLYCKPRGEARAVHNLTLQ---------EIETYLPTIGEEKRVKGQIIVKRIPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----------- 111
GY+ I I T V +G E + V DS I I +
Sbjct: 53 GYLFIYFDPQITSVARIHSTRGVGRIVGCKELMTTVDDSIIHSIKMREHKLLSELLPELK 112
Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
A + P + V F GE++ ++GPFA GI + + +K R HV I G+ V
Sbjct: 113 LEGADAQELPATEVEFSPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFDIMGQQKRVS 171
Query: 168 LAYNQVEKI 176
++ ++ I
Sbjct: 172 VSKRIIKPI 180
>gi|168031471|ref|XP_001768244.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680422|gb|EDQ66858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 719
Score = 97.5 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRS--GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V E +A E + + ++ G+ + V +IPS R ++ GR +S R +P
Sbjct: 119 WYMVSTPKKAEHEAAEQLHIQFAQMFPGMKYEVLTPSIPSFR--KLKSGRYSDSRVRLYP 176
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---------PSPVTDSEIEHIMNQVEAA 113
G +LI+ VM VY+ I+ ++ F GT PS V+ EIE + ++E A
Sbjct: 177 GCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEA 236
Query: 114 VQR-------------------------------PVSSVFFEVGERVCVSDGPFASFNGI 142
P E G + ++ GPF + GI
Sbjct: 237 EAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGI 296
Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
V VD E V + VVIFG+ T EL ++
Sbjct: 297 VNYVDHENETVQLSVVIFGQSTDAELRIDE 326
>gi|148980746|ref|ZP_01816202.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3]
gi|145961096|gb|EDK26415.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3]
Length = 168
Score = 97.5 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ +K+A + + + E P V V +G++ + FP
Sbjct: 2 KRWYLLYCKRGDQKRAQQHLENQ---------GVECFYPQIEVEKVVRGKEKVVKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSS 120
YV ++ + T++ T V+ F+ G P V + + ++ +
Sbjct: 53 SYVFVRFDYEQGPSFTTVRSTRGVVDFIKFGAQPHEVQGDLVFELKELEMHCSNDVEDCC 112
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V FE G+ V ++ G FA I D E +R + V + +V P+ +
Sbjct: 113 VEFESGQVVKINSGQFAGIEAIFHQKDGE-ARSIMLVKMISQVVPISIE 160
>gi|239947116|ref|ZP_04698869.1| transcription antitermination protein NusG [Rickettsia endosymbiont
of Ixodes scapularis]
gi|239921392|gb|EER21416.1| transcription antitermination protein NusG [Rickettsia endosymbiont
of Ixodes scapularis]
Length = 83
Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 59/81 (72%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P +T+SEI++I N +EA + +S +EVGE V V+DGPF +F G V+ +D+EK+R+
Sbjct: 1 PRALTESEIQNIFNNLEAEAKEAKNSKLYEVGEIVAVTDGPFETFMGTVEEIDQEKNRLK 60
Query: 155 VEVVIFGRVTPVELAYNQVEK 175
V V IFG+ TP+EL +NQV+K
Sbjct: 61 VSVSIFGKATPIELNFNQVKK 81
>gi|302337848|ref|YP_003803054.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
gi|301635033|gb|ADK80460.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
Length = 184
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLD---HLVTEITIPSERVVSVRKGRKVNSERRFFP 62
Y +QV + EK+ ++ +++ + + ++ P + ++G+ + FP
Sbjct: 4 YSMQVITRQEKRFMQLAENAIAQFEKEQGVEITGKLLWPRRSLKIRKRGKTTQEQAPIFP 63
Query: 63 GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
GY+ +A + +VY +K I FL + + P+T + E +++ + S+V
Sbjct: 64 GYLFWQAESLEPEVYWLLKRNSGFIRFLKSNYDIEPLTGASKELLVHFLNYGEVVGTSTV 123
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F G+R+ V GP G ++ V++ K R +E++++ + ++ A++ ++K
Sbjct: 124 TFGTGDRIVVLSGPMKGLEGNIRKVNKRKGRAKIELMLYEQSFLIDFAFDGIKK 177
>gi|220926074|ref|YP_002501376.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219950681|gb|ACL61073.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 255
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW+++ ++A + + +G+ ++T+ + E V GR+ +R
Sbjct: 90 RRWHVMVAKPRFARRAAKDLTK----AGIPAVLTDERV--ELVEE--SGRRRIVKRPLLR 141
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
+ + ++T V + G V ++ + + + +
Sbjct: 142 RVLFVGLPRCAAPEVVHRETYFVRDAVRDGCGRAIQVPADQLRRFVRALADTLTERDPNA 201
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE G+ + + GPFASF+GI+++ D R+ V V IFGR +PV L +++VE+
Sbjct: 202 -FEPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVER 254
>gi|320535930|ref|ZP_08035997.1| transcription termination factor NusG [Treponema phagedenis F0421]
gi|320147213|gb|EFW38762.1| transcription termination factor NusG [Treponema phagedenis F0421]
Length = 182
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 12/176 (6%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVT----EITIPSERVVSVRKGRKVNSERRFF 61
Y +QV + E +S T ++ P + +KG F
Sbjct: 4 YALQVQTGKEA-------FFISSVNAGDKETSERWQVYFPQRTLNIRKKGVFFKKNMPVF 56
Query: 62 PGYVLIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYV + A ++ K+Y +K T FL +NPSP+ ++ + + + +S
Sbjct: 57 PGYVFLAATILDAKLYKKLKSTKGFYRFLPNNQNPSPLFGRDLMLLQHFISFGNLAGISQ 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V F+ +R+ + GP G + VD+ K R +++ ++ ++ + +E I
Sbjct: 117 VCFDENDRIKILAGPLKGLEGDIVKVDKRKGRAKIKLDMYTDSFLIDFGFEILENI 172
>gi|297520794|ref|ZP_06939180.1| transcription antitermination protein NusG [Escherichia coli OP50]
Length = 66
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/65 (56%), Positives = 45/65 (69%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ +P FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL +
Sbjct: 1 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 60
Query: 171 NQVEK 175
+QVEK
Sbjct: 61 SQVEK 65
>gi|163750517|ref|ZP_02157755.1| transcriptional activator rfaH, putative [Shewanella benthica KT99]
gi|161329672|gb|EDQ00661.1| transcriptional activator rfaH, putative [Shewanella benthica KT99]
Length = 180
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 25/189 (13%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +AV + + E +P+ KG+ + FP
Sbjct: 2 KAWYLLYCKPRGEARAVHHLTLQ---------EIETYLPTIGEEEKVKGQVIVKRIPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA---------- 112
GY+ I I T V +G E+ + V D+ I I +
Sbjct: 53 GYLFIYFDPQITSVARIHSTRGVGRIVGCKESMTTVDDNIIHSIKMREHKLLSELLPEYK 112
Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ + PV+ + F GE++ ++GPFA GI + + +K R HV I G+ +
Sbjct: 113 AEGAGSDELPVTDIEFTPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFEIMGQQKRIS 171
Query: 168 LAYNQVEKI 176
+ ++ I
Sbjct: 172 VPKKSIKPI 180
>gi|254283967|ref|ZP_04958935.1| Transcription termination factor nusG domain protein [gamma
proteobacterium NOR51-B]
gi|219680170|gb|EED36519.1| Transcription termination factor nusG domain protein [gamma
proteobacterium NOR51-B]
Length = 214
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 13/159 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V E A + R G I ++ ++G+ FP
Sbjct: 21 RRWYVVASKPRSEGVAKSQLE----RQGFVTCAPRI-----KLRKRQRGKWQQVIEPLFP 71
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ + + I+ T IG + G PV ++ ++ +++ S
Sbjct: 72 GYLFVALRLGVDDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSI---GESPDASEAV 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
F+ G+ V GPF +GI K + + + R V + + G
Sbjct: 129 FQPGQAVRFEAGPFEGLSGIFK-MPKGQDRAEVLITLLG 166
>gi|83309147|ref|YP_419411.1| transcription antitermination protein nusG [Magnetospirillum
magneticum AMB-1]
gi|82943988|dbj|BAE48852.1| Transcription antitermination protein nusG [Magnetospirillum
magneticum AMB-1]
Length = 167
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 11/171 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V ++N EK ++ L ++ +P + + FP Y
Sbjct: 4 WFVVHTHANAEK---------IAAGHLQRQHFDVYLPQYSKRRSHARKVEWVKAPLFPRY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVFF 123
+ ++ + +I+ T V + G P P+ I+ I + + + + ++ F
Sbjct: 55 LFLRMDPDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGEAMPF 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+R+ + +GP A G+ + +D + +RV + + + GR V + V
Sbjct: 115 ASGQRLEIVEGPLAEQLGLFQGLD-DMNRVVLLLDLLGRQVRVRVPLEAVR 164
>gi|255018875|ref|ZP_05291001.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL F2-515]
Length = 78
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
P+ E + I+ + +R FE+GE V V +GPFA F+G V +D +K + V
Sbjct: 1 PLLPEEADRILKSMGMVEKRA--EADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVM 58
Query: 157 VVIFGRVTPVELAYNQVEKI 176
V +FGR TPVE+ +NQ+EK+
Sbjct: 59 VNMFGRETPVEVDFNQIEKL 78
>gi|313676303|ref|YP_004054299.1| nusg antitermination factor [Marivirga tractuosa DSM 4126]
gi|312943001|gb|ADR22191.1| NusG antitermination factor [Marivirga tractuosa DSM 4126]
Length = 174
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + S EKK + + E+ P++ V+ RK + FP Y
Sbjct: 4 WFAIYTKSRTEKKVADRLA---------DQHIEVYCPTQTVMRQWSDRKKKVKVAVFPSY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V +K ++ I TP V+ F+ + + EIE I N + + V F+
Sbjct: 55 VFVKFQDDNERLR-ILQTPGVVNFVRHLGADAKIRPKEIEAIQNLLGEYEEVSVE--PFQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG++V + G G V + E+K RV V + G E++ +V+K+
Sbjct: 112 VGDKVQIQHGGMKGQEGKV--ILEQKDRVIVYIESLGLSLKAEVSKAKVKKV 161
>gi|70728935|ref|YP_262171.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5]
gi|68343234|gb|AAY90840.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5]
Length = 239
Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQ + +A E++ + P V +GR+ + FPGY
Sbjct: 84 WYLVQCKPRQDLRAEENLRRQ---------GFHCYRPQRGCERVVQGRRQSGTESLFPGY 134
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I D + ++ T V + P V S IE + +V +S+ ++
Sbjct: 135 LFIALE-HDASWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLRQRVTDMD----TSLPYK 189
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G RVC+++G FA I ++ + RV + + + + +EL + + KI
Sbjct: 190 -GTRVCITEGCFADLEAIFESSIGD-ERVVLLLTLLNQQRRIELPLSSIRKI 239
>gi|256424285|ref|YP_003124938.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256039193|gb|ACU62737.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 174
Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ Y EKK + L ++ +P + V R E FP
Sbjct: 14 KWYVLYTYPLFEKKIGRQLA-------LIDIIH--YLPVKTEVRKWSDRLKRMEVPLFPN 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K + +K I P V+ F+ +++ +I I Q+E + Q +
Sbjct: 65 YIFVKTNLLNKT--PILGIPGVVRFVSVEGRAIAISEDDINKI-RQIEQSRQDVEIESVY 121
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV--IFGRVTPVELAYNQVEKI 176
G+++ + +G F+ G + + +R+ V + + + VE++ +EKI
Sbjct: 122 NTGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKI 173
>gi|325970070|ref|YP_004246261.1| NusG antitermination factor [Spirochaeta sp. Buddy]
gi|324025308|gb|ADY12067.1| NusG antitermination factor [Spirochaeta sp. Buddy]
Length = 182
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 5/171 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y + + E+K + R + +I IP R++ RKG+K+ S+ PGY+
Sbjct: 4 YFIACRTGGEEKVRAHLNKFFIRERGEMHEVDIFIPMRRMIDRRKGKKIMSDHPILPGYL 63
Query: 66 LIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
L+ + +TD V I P GFL + + + ++ + S V +
Sbjct: 64 LLSSEEPLTDFVMD-IHRIPGCYGFLHNLDKTIELKGPDHQYAAWIMHNKGTIKPSKVVY 122
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQ 172
GE + V +GP F G V +VD +RV VE R + + + Q
Sbjct: 123 TQGEPIKVVEGPLQDFMGTVISVDYRHNRVMVEFQFAEVIRKVSMPVEFIQ 173
>gi|292490822|ref|YP_003526261.1| transcriptional activator RfaH [Nitrosococcus halophilus Nc4]
gi|291579417|gb|ADE13874.1| transcriptional activator RfaH [Nitrosococcus halophilus Nc4]
Length = 172
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ R WY++ E A E++ + E +P R + R R++
Sbjct: 7 SKRSWYLIWCKPRKEHLAQENLERQR---------FETYLPLVRQLRRRAHRRITVVEPL 57
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP Y+ I + +I+ T V + G+ P+ V D I+ + + S
Sbjct: 58 FPRYLFIHLDKEKDNWSSIRSTIGVTALVRFGDQPAQVPDRLIKELQAHESPDGIHDLPS 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
F+ G+++ + +GP A GI + K R V + I G+ E+ N +
Sbjct: 118 RSFQQGQKIRIEEGPLAGHEGIWLASNG-KERAQVLLEIMGKQIKTEMNQNWL 169
>gi|224369771|ref|YP_002603935.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium
autotrophicum HRM2]
gi|223692488|gb|ACN15771.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium
autotrophicum HRM2]
Length = 174
Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 11/174 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY + S E I + E+ +P + S RK RK+ + F
Sbjct: 4 EKSWYTLLTKSRFENVVFNDIQKKS---------IEVFLPKIKKRSQRKDRKLMIDVPLF 54
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
PGY+ + + + ++ T + LG P PV + IE + + ++
Sbjct: 55 PGYLFVNITLDPVTHLSVVKTTGAVRLLGYSSGPVPVPSAHIESLKIVTGTGLDVVSGTI 114
Query: 122 F-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ GERV V GPF+ G K RV +++ G+ VE+ +E
Sbjct: 115 NTLQKGERVLVVRGPFSGVKGEFLRHKG-KDRVIIKIETLGQFAGVEIDREDLE 167
>gi|260596064|ref|YP_003208635.1| transcriptional activator RfaH [Cronobacter turicensis z3032]
gi|260215241|emb|CBA27127.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
Length = 179
Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +GR+ + FP Y
Sbjct: 21 WYLLYCKRGQLQRAKEHLERQSVN---------CLTPMITLEKMVRGRRTSVSEPLFPNY 71
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ D TI T V F+ G +P+ V + IE +++ V P +
Sbjct: 72 LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDT---PH 128
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E +R + + + +
Sbjct: 129 TGDMVVITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQV 167
>gi|261211969|ref|ZP_05926255.1| transcriptional activator RfaH [Vibrio sp. RC341]
gi|260838577|gb|EEX65228.1| transcriptional activator RfaH [Vibrio sp. RC341]
Length = 165
Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ +++A + + E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRGEQQRAKIHLENQNV---------ECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G +P + I + Q++ + ++
Sbjct: 53 SYMFVRFDFEHGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQMKNLAKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ + V+ GPFA I + D + R + V + + P+ +
Sbjct: 112 LPEKGQTIRVARGPFAGIEAIYQEPDGDT-RSIMLVKMISQQVPMSIE 158
>gi|156935836|ref|YP_001439752.1| transcriptional activator RfaH [Cronobacter sakazakii ATCC BAA-894]
gi|156534090|gb|ABU78916.1| hypothetical protein ESA_03719 [Cronobacter sakazakii ATCC BAA-894]
Length = 184
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +GR+ + FP Y
Sbjct: 26 WYLLYCKRGQLQRAKEHLERQSVN---------CLTPMITLEKMVRGRRTSVSEPLFPNY 76
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ D TI T V F+ G +P+ V + IE +++ V P +
Sbjct: 77 LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDT---PH 133
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E +R + + + +
Sbjct: 134 TGDMVVITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQV 172
>gi|325105016|ref|YP_004274670.1| NusG antitermination factor [Pedobacter saltans DSM 12145]
gi|324973864|gb|ADY52848.1| NusG antitermination factor [Pedobacter saltans DSM 12145]
Length = 169
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY + EKK E++ + E+ +PS++++ RK + F
Sbjct: 8 HRWYPIYTKPRFEKKVAENLLKQ---------GIEVYLPSQKILKQWSDRKKWVDEPLFK 58
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV I Y + TP V+ F+ + V D E+ + + + F
Sbjct: 59 SYVFIHINYLQ--YDQVVRTPGVVRFIYFSGKIASVPDMEMNFLQTYLSGDFTVETTGQF 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ G++V + G F + + + EK R+ + + G+ + + V
Sbjct: 117 IKSGDKVKIVSGKFKGYEAEMVSYQNEK-RLILRIDALGQSILLNIPVADV 166
>gi|59711410|ref|YP_204186.1| transcriptional activator RfaH [Vibrio fischeri ES114]
gi|59479511|gb|AAW85298.1| DNA-binding transcriptional antiterminator [Vibrio fischeri ES114]
Length = 164
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 68/173 (39%), Gaps = 12/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ ++ L++ + E P V + +G++ + FP
Sbjct: 2 KQWYLLYCKRG---------EQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ I + +I+ T V F+ G P + I + ++ +
Sbjct: 53 CYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIYS-LKALDENNNKEKLEC 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
E G++V + +GP++ I K D EK R + + + + +++ + +E
Sbjct: 112 LPEAGQKVAIKEGPYSGIEAIYKEADGEK-RSILLITLINKKVEIKIPNSDIE 163
>gi|116623748|ref|YP_825904.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116226910|gb|ABJ85619.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 179
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ V+V SN EKK+ + + + G PS R ++ FPGY
Sbjct: 20 WFAVKVRSNFEKKSADILREK----GYQEFA-----PSYPSRRYWSDRVKVIDQPLFPGY 70
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + + + T V+ +G G +PV + E+ + + +++ F
Sbjct: 71 VFCRFHPNH--FLPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQRE-FLH 127
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG +V + GP A GI++ + + R+ V + + R E+ N V +
Sbjct: 128 VGRKVLIRRGPLAGVEGILEEI-RKGYRIVVSISLLQRSVTAEIDANWVTTV 178
>gi|254291864|ref|ZP_04962647.1| transcriptional activator RfaH, putative [Vibrio cholerae AM-19226]
gi|262190284|ref|ZP_06048553.1| transcriptional activator RfaH [Vibrio cholerae CT 5369-93]
gi|150422224|gb|EDN14188.1| transcriptional activator RfaH, putative [Vibrio cholerae AM-19226]
gi|262033832|gb|EEY52303.1| transcriptional activator RfaH [Vibrio cholerae CT 5369-93]
Length = 165
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G +P + I + Q++ + +
Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKHTTKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I D + R + V + + P+ +
Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIE 158
>gi|15641005|ref|NP_230636.1| transcriptional activator RfaH [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587350|ref|ZP_01677121.1| transcriptional activator RfaH, putative [Vibrio cholerae 2740-80]
gi|121728134|ref|ZP_01681170.1| transcriptional activator RfaH, putative [Vibrio cholerae V52]
gi|147675715|ref|YP_001216462.1| transcriptional activator RfaH [Vibrio cholerae O395]
gi|153216032|ref|ZP_01950237.1| transcriptional activator RfaH, putative [Vibrio cholerae 1587]
gi|153818608|ref|ZP_01971275.1| transcriptional activator RfaH, putative [Vibrio cholerae NCTC
8457]
gi|153822702|ref|ZP_01975369.1| transcriptional activator RfaH, putative [Vibrio cholerae B33]
gi|153826186|ref|ZP_01978853.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-2]
gi|153829897|ref|ZP_01982564.1| putative transcriptional activator RfaH [Vibrio cholerae 623-39]
gi|183179424|ref|ZP_02957635.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-3]
gi|227081164|ref|YP_002809715.1| putative transcriptional activator RfaH [Vibrio cholerae M66-2]
gi|229505411|ref|ZP_04394921.1| transcriptional activator RfaH [Vibrio cholerae BX 330286]
gi|229510919|ref|ZP_04400398.1| transcriptional activator RfaH [Vibrio cholerae B33]
gi|229512448|ref|ZP_04401921.1| transcriptional activator RfaH [Vibrio cholerae TMA 21]
gi|229518040|ref|ZP_04407484.1| transcriptional activator RfaH [Vibrio cholerae RC9]
gi|229529916|ref|ZP_04419306.1| hypothetical protein VCG_003020 [Vibrio cholerae 12129(1)]
gi|229608430|ref|YP_002879078.1| transcriptional activator RfaH [Vibrio cholerae MJ-1236]
gi|254226222|ref|ZP_04919816.1| transcriptional activator RfaH, putative [Vibrio cholerae V51]
gi|254848121|ref|ZP_05237471.1| transcriptional activator RfaH [Vibrio cholerae MO10]
gi|255744772|ref|ZP_05418723.1| transcriptional activator RfaH [Vibrio cholera CIRS 101]
gi|262151261|ref|ZP_06028397.1| transcriptional activator RfaH [Vibrio cholerae INDRE 91/1]
gi|262167175|ref|ZP_06034888.1| transcriptional activator RfaH [Vibrio cholerae RC27]
gi|297578597|ref|ZP_06940525.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298498895|ref|ZP_07008702.1| transcriptional activator RfaH [Vibrio cholerae MAK 757]
gi|9655451|gb|AAF94151.1| transcriptional activator RfaH, putative [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121548433|gb|EAX58493.1| transcriptional activator RfaH, putative [Vibrio cholerae 2740-80]
gi|121629602|gb|EAX62024.1| transcriptional activator RfaH, putative [Vibrio cholerae V52]
gi|124114482|gb|EAY33302.1| transcriptional activator RfaH, putative [Vibrio cholerae 1587]
gi|125621258|gb|EAZ49598.1| transcriptional activator RfaH, putative [Vibrio cholerae V51]
gi|126510834|gb|EAZ73428.1| transcriptional activator RfaH, putative [Vibrio cholerae NCTC
8457]
gi|126519783|gb|EAZ77006.1| transcriptional activator RfaH, putative [Vibrio cholerae B33]
gi|146317598|gb|ABQ22137.1| putative transcriptional activator RfaH [Vibrio cholerae O395]
gi|148874640|gb|EDL72775.1| putative transcriptional activator RfaH [Vibrio cholerae 623-39]
gi|149740046|gb|EDM54215.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-2]
gi|183012835|gb|EDT88135.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-3]
gi|227009052|gb|ACP05264.1| putative transcriptional activator RfaH [Vibrio cholerae M66-2]
gi|227012807|gb|ACP09017.1| putative transcriptional activator RfaH [Vibrio cholerae O395]
gi|229333690|gb|EEN99176.1| hypothetical protein VCG_003020 [Vibrio cholerae 12129(1)]
gi|229344755|gb|EEO09729.1| transcriptional activator RfaH [Vibrio cholerae RC9]
gi|229350529|gb|EEO15476.1| transcriptional activator RfaH [Vibrio cholerae TMA 21]
gi|229350884|gb|EEO15825.1| transcriptional activator RfaH [Vibrio cholerae B33]
gi|229357634|gb|EEO22551.1| transcriptional activator RfaH [Vibrio cholerae BX 330286]
gi|229371085|gb|ACQ61508.1| transcriptional activator RfaH [Vibrio cholerae MJ-1236]
gi|254843826|gb|EET22240.1| transcriptional activator RfaH [Vibrio cholerae MO10]
gi|255737803|gb|EET93197.1| transcriptional activator RfaH [Vibrio cholera CIRS 101]
gi|262024396|gb|EEY43084.1| transcriptional activator RfaH [Vibrio cholerae RC27]
gi|262030952|gb|EEY49580.1| transcriptional activator RfaH [Vibrio cholerae INDRE 91/1]
gi|297536191|gb|EFH75024.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543228|gb|EFH79278.1| transcriptional activator RfaH [Vibrio cholerae MAK 757]
gi|327483711|gb|AEA78118.1| Transcriptional activator RfaH [Vibrio cholerae LMA3894-4]
Length = 165
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G +P + I + Q++ + +
Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKHATKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I D + R + V + + P+ +
Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIE 158
>gi|209694405|ref|YP_002262333.1| transcriptional activator RfaH [Aliivibrio salmonicida LFI1238]
gi|208008356|emb|CAQ78511.1| transcriptional activator RfaH [Aliivibrio salmonicida LFI1238]
Length = 165
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 11/166 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +++A + + E P V + +G++ + FP Y
Sbjct: 4 WYLLYCKRGDQQRAKLHLENQNV---------ECFYPEIDVEKMIRGKRTTVKEPLFPCY 54
Query: 65 VLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ ++ T + TI+ T + F+ G P+ + I + E +
Sbjct: 55 MFVRFDFTVGPTFTTIRSTRGISDFVRFGSQPTVLNGDLIYSLKQLGENLHHKKTIECLP 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G++V + +GP+ + I K D E R + + + + +++
Sbjct: 115 ESGQKVDIIEGPYTGIDAIYKEADGE-MRSILLITLINKKVEIKIE 159
>gi|295789221|pdb|2KVQ|G Chain G, Solution Structure Of Nuse:nusg-Ctd Complex
Length = 63
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 5 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 62
>gi|229523219|ref|ZP_04412626.1| transcriptional activator RfaH [Vibrio cholerae TM 11079-80]
gi|229339582|gb|EEO04597.1| transcriptional activator RfaH [Vibrio cholerae TM 11079-80]
Length = 165
Score = 94.8 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + T++ T V+ F+ G +P + I + Q++ + +
Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKNATKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I D + R + V + + P+ +
Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIE 158
>gi|90410777|ref|ZP_01218792.1| transcriptional activator RfaH [Photobacterium profundum 3TCK]
gi|90328408|gb|EAS44706.1| transcriptional activator RfaH [Photobacterium profundum 3TCK]
Length = 165
Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
W+++ S E+ + LD E P V + +G++V + F
Sbjct: 2 KDWFLLYCKRSEQERAVI----------NLDRQGVECYYPQVSVNKIVRGKRVETSEPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ + Y T++ T V F+ G P V + +M + S
Sbjct: 52 PSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNENCEDHQAKLSS 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GE + + G F I + D EK R + + + G+ V + + K
Sbjct: 112 LPIPGECLQLKQGQFKGIEAIYQEADGEK-RSFMLINLLGKPVKVSVENEDIVK 164
>gi|86148390|ref|ZP_01066682.1| transcriptional activator RfaH [Vibrio sp. MED222]
gi|85833804|gb|EAQ51970.1| transcriptional activator RfaH [Vibrio sp. MED222]
Length = 168
Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ +K+A + + + E P V V +G++ + FP
Sbjct: 2 KRWYLLYCKRGDQKRAQQHLENQ---------GVECFYPQIEVEKVVRGKEKLVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSS 120
Y+ ++ + T++ T V+ F+ G P V + + + + +
Sbjct: 53 SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEVQGDLVFELKEFEKCCSSEVEDCC 112
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V FE G+ V ++ G FA I D E +R + V + +V P+ +
Sbjct: 113 VEFESGQVVKINSGQFAGVEAIYHQKDGE-ARSIMLVKMISQVVPISIE 160
>gi|262276329|ref|ZP_06054138.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886]
gi|262220137|gb|EEY71453.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886]
Length = 165
Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M P WY++ E+ + L R G+D ++ V +R+G++ +
Sbjct: 1 MDP-WYLLYCK-RSEQ---QRAEQHLKRQGVDCYYPQVM-----VEKIRRGKRSSELEPL 50
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP YV + T++ T V+ F+ G P+ V I H+M ++ QR S
Sbjct: 51 FPNYVFASFDPEKISFTTVRSTRGVVDFVRQGLMPTVVPAELITHLMAHEDSDEQREALS 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F+ G++V V G F I K D E R + + + R V + K
Sbjct: 111 DVFKPGDQVEVLSGLFEGTEAIYKEADGE-LRSILLINLISRQVEVSTENKVIRK 164
>gi|218710232|ref|YP_002417853.1| transcriptional activator RfaH [Vibrio splendidus LGP32]
gi|218323251|emb|CAV19428.1| Transcription antiterminator [Vibrio splendidus LGP32]
Length = 168
Score = 94.4 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ +K+A + + + E P V V +G++ + FP
Sbjct: 2 KRWYLLYCKRGDQKRAQQHLENQ---------GVECFYPQIEVEKVVRGKEKLVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSS 120
Y+ ++ + T++ T V+ F+ G P V + + + + +
Sbjct: 53 SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEVQGDLVFELKEFEKCCSSEVEDCC 112
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V FE G+ V ++ G FA I D E +R + V + +V P+ +
Sbjct: 113 VEFETGQVVKINSGQFAGVEAIYHQKDGE-ARSIMLVKMISQVVPISIE 160
>gi|54309803|ref|YP_130823.1| transcriptional activator RfaH [Photobacterium profundum SS9]
gi|46914241|emb|CAG21021.1| putative transcriptional activator RfaH [Photobacterium profundum
SS9]
Length = 165
Score = 94.4 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 3 PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
W+++ S E+ + LD E P V + +G++V F
Sbjct: 2 KDWFLLYCKRSEQERAVI----------NLDRQGVECYYPQVNVNKIVRGKRVEISEPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ + Y T++ T V F+ G P V + +M V + S
Sbjct: 52 PSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNENCEVHQAKLSS 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GE + + G F I + D EK R + + + G+ V + + K
Sbjct: 112 LPIPGECLQLKQGQFKGIEAIYQEADGEK-RSFMLINLLGKPVKVSVENEDIVK 164
>gi|229816235|ref|ZP_04446545.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM
13280]
gi|229808243|gb|EEP44035.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM
13280]
Length = 170
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 6/162 (3%)
Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
E +A I ++++ +D +P V + G+ + FPGYV ++ +
Sbjct: 13 EDRAAALI-AKIAQGAVDD----CFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQ 67
Query: 75 VYHTIKDTPKVIGFLGTGENPS-PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
+ + P L + + P+T E+ I S G+ V V
Sbjct: 68 IREALGRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEMSEGVIEGDCVMVIR 127
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
GP + +D K V++ +FGR + + V K
Sbjct: 128 GPLKGHEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169
>gi|323691443|ref|ZP_08105715.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum
WAL-14673]
gi|323504489|gb|EGB20279.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum
WAL-14673]
Length = 213
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++QV E+K E I +L+ D + E IP + V KGR E FPGY
Sbjct: 20 WYVIQVQGGQEEKTAELIKKQLTLC--DDSLRECFIPKKERVKKFKGRWQQVEELLFPGY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSV-- 121
V + +++Y +K ++ L G +++ E + I + VS V
Sbjct: 78 VFADSGNAEELYRRLKQVGRLTKVLQDGNFLFLSLSEDEEQRIKAIGDCRHVTRVSKVRV 137
Query: 122 ----------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ G+ V V +GP G V V+ K V V++ GR+ V+L
Sbjct: 138 VGGEYSGRADGIDRGKNVVVREGPLKGLEGYVTKVNLHKREVTVQMPFAGRMVDVKLGIE 197
Query: 172 QVEK 175
V++
Sbjct: 198 LVDE 201
>gi|84393780|ref|ZP_00992527.1| transcriptional activator RfaH [Vibrio splendidus 12B01]
gi|84375577|gb|EAP92477.1| transcriptional activator RfaH [Vibrio splendidus 12B01]
Length = 168
Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ +K+A + + + E P V V +G++ + FP
Sbjct: 2 KRWYLLYCKRGDQKRAQQHLENQ---------GVECFYPQIDVKKVVRGKEKQVKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-QVEAAVQRPVSS 120
Y+ ++ + T++ T V+ F+ G P V + + + +
Sbjct: 53 SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPHEVQGDLVYELKEFEKCCEDEPEECC 112
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V FE G+ V ++ G FA I D E +R + V + +V P+ +
Sbjct: 113 VEFESGQVVKINSGQFAGVEAIFHQKDGE-ARSIMLVKMISKVVPISIE 160
>gi|114775633|ref|ZP_01451201.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1]
gi|114553744|gb|EAU56125.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1]
Length = 172
Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 14/170 (8%)
Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M+ +W+ ++V E A ++ + E+ +P G+ R
Sbjct: 1 MSDKQWFAIRVKPRQESLAAANLERQ---------GFEVYLPMINTRISHAGKVSWQPRP 51
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FF GY+ + + ++ + TI+ T V+ + G P++D I + + + VS
Sbjct: 52 FFAGYLFVHLSIDEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVS 111
Query: 120 SV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
S F GE+V + DG G+ + + R + + + V
Sbjct: 112 STPESPFRAGEKVRMLDGAMKGLEGVFIEM-RGQDRALILLDWMKKSMRV 160
>gi|196231071|ref|ZP_03129931.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
gi|196224901|gb|EDY19411.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
Length = 186
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+WY ++ E A + ++ P R+ + V F
Sbjct: 17 EAKWYCLRAQPKHEHIAAARLRQCEE--------IQVFCPRVRIQRSTRRGLVWFTEALF 68
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ + + + ++ V G + G++ V ++ + +E A + VS
Sbjct: 69 PNYLFARFEWV-QSHALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYMEDAELKTVS-F 126
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ V + +GPF NG+VK + + RV V + + G T V+L V K
Sbjct: 127 NIDEGDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180
>gi|238918124|ref|YP_002931638.1| transcriptional activator RfaH [Edwardsiella ictaluri 93-146]
gi|238867692|gb|ACR67403.1| transcriptional activator RfaH, putative [Edwardsiella ictaluri
93-146]
Length = 163
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + IP + V +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLTRAREHLTRQ---------EIPCVIPMITLEKVVRGKRTQVQEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ T++ T V F+ G+ P+ V S ++ +M P + +
Sbjct: 55 MFIELDPERIHTTTVQSTRGVSHFIRFGKLPAIVPFSIVKPLMMTPALTAIAPQTPI--- 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+RV ++ G F I + D EK R + + + + L+ + EKI+
Sbjct: 112 PGDRVRITQGAFNGIEAIYRESDGEK-RAILLLSLLNQEVSHTLSNSAFEKIL 163
>gi|167769207|ref|ZP_02441260.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM
17241]
gi|167668847|gb|EDS12977.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM
17241]
Length = 169
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 11/171 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++QV + E +++ G+ +P E + + G +
Sbjct: 1 MAK-WYVLQVLAGQETAVRDAL----HIMGI-----RAAVPQEERLLRKNGGWTSRIYTL 50
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
FPGYV + + + Y+ +K P V+ FLG +PS +T E E + S
Sbjct: 51 FPGYVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLRLLSNGGEPLKPS 110
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
V V + +G +F + D R V + + G + L+
Sbjct: 111 RVEELPDGSVRIMEGVLQNFPVRSIHFDRRARRARVGITLCGEPKILTLSM 161
>gi|258627093|ref|ZP_05721889.1| transcriptional activator RfaH [Vibrio mimicus VM603]
gi|258580611|gb|EEW05564.1| transcriptional activator RfaH [Vibrio mimicus VM603]
Length = 165
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQDVECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + + T++ T V+ F+ G +P + I + Q++ + +
Sbjct: 53 SYMFVRFDFEEGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKGPAKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I + D + R + V + + P+ +
Sbjct: 112 LPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPLSIE 158
>gi|127512329|ref|YP_001093526.1| NusG antitermination factor [Shewanella loihica PV-4]
gi|126637624|gb|ABO23267.1| transcription antitermination protein nusG [Shewanella loihica
PV-4]
Length = 175
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 3 PRWYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V E +A +++ ++ +P+ + G+ F
Sbjct: 2 KSWYLVYCKPRGETRAQQNLALQQIET----------YLPTLPQQITKSGKNSVKRLPLF 51
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ I + I T V +G E + + D+ + I + +
Sbjct: 52 PCYLFIYFDPLEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPS 111
Query: 122 F----------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
VG++V +GPF GI + +K R H+ I G+ V ++
Sbjct: 112 DDLLSGNAEPRLSVGDKVKFVEGPFKELEGIFEEQSGDK-RCHILFEIMGQQKRVSVSRV 170
Query: 172 QVEKI 176
++ I
Sbjct: 171 SIKGI 175
>gi|224087633|ref|XP_002308199.1| predicted protein [Populus trichocarpa]
gi|222854175|gb|EEE91722.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 68/236 (28%)
Query: 1 MTPRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSE 57
+ P+W+IV+V E + RL + ++ PS + ++ G
Sbjct: 107 LGPQWWIVRVSRIRGDETS---DVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKP 163
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQ 109
+ FPG V + V+ +++ +++ V GF+G P PV+D ++E + Q
Sbjct: 164 KPIFPGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAVFQQ 223
Query: 110 VEAAVQRPVSSVFFEV-------------------------------------------- 125
+ ++ + + FE
Sbjct: 224 AKE--EQEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSR 281
Query: 126 --------GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V G FA F G +K ++ + + V V +FG+ + VEL +++
Sbjct: 282 KKGDLPKTGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337
>gi|269137513|ref|YP_003294213.1| transcriptional activator RfaH [Edwardsiella tarda EIB202]
gi|267983173|gb|ACY83002.1| transcriptional activator RfaH [Edwardsiella tarda EIB202]
gi|304557587|gb|ADM40251.1| Transcriptional activator RfaH [Edwardsiella tarda FL6-60]
Length = 163
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + V +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLTRAREHLTRQ---------EIPCVTPMITLEKVVRGKRTQVQEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ T++ T V F+ G+ P+ V S ++ +M P + +
Sbjct: 55 MFIELDPERIHTTTVQSTRGVSHFVRFGKLPATVPFSIVKQLMMAPTPTAIAPQTPI--- 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+RV ++ G F+ I + D EK R + + + + L+ + EKI+
Sbjct: 112 PGDRVRITQGAFSGMEAIYRESDGEK-RAILLLNLLNQEVSHTLSNSAFEKIL 163
>gi|88608554|ref|YP_506561.1| putative transcription termination/antitermination factor NusG
[Neorickettsia sennetsu str. Miyayama]
gi|88600723|gb|ABD46191.1| putative transcription termination/antitermination factor NusG
[Neorickettsia sennetsu str. Miyayama]
Length = 176
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +++V S E K + I R S + L + + ++ +RF PGY
Sbjct: 12 WCVLRVRSGSESKVCDLIKSRCSDEVV-DLFSPALV----------KFDASASKRFLPGY 60
Query: 65 VLIKAVMTDKVYHTI---KDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
V +K V I + + FL +P ++D +I+ + N + + + S
Sbjct: 61 VFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFM-LSPEVTPES 119
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG RV + F + G V +DE S+ V++V G+ V +Q++ +
Sbjct: 120 GKISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 175
>gi|6478916|gb|AAF14021.1|AC011436_5 unknown protein [Arabidopsis thaliana]
Length = 332
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 81/235 (34%), Gaps = 67/235 (28%)
Query: 3 PRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSERR 59
P+W+ V+V E I R + + PS +V ++ G +
Sbjct: 95 PQWWAVRVSRLRGHET---AQILARALARQFPEMEFTVYAPSVQVKRKLKNGSISVKPKP 151
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111
FPG + I+ ++ +++ +I+D V GF+G+ P PV DS++E I Q +
Sbjct: 152 VFPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAK 211
Query: 112 A-----------------------------------------------------AVQRPV 118
A +
Sbjct: 212 EAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATETKA 271
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V G FA F G +K ++ + ++ V +FG+ T VE+ N++
Sbjct: 272 KKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINEL 326
>gi|18398425|ref|NP_566346.1| PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription
elongation regulator [Arabidopsis thaliana]
gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]
gi|22136582|gb|AAM91077.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]
Length = 333
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 81/235 (34%), Gaps = 67/235 (28%)
Query: 3 PRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSERR 59
P+W+ V+V E I R + + PS +V ++ G +
Sbjct: 96 PQWWAVRVSRLRGHET---AQILARALARQFPEMEFTVYAPSVQVKRKLKNGSISVKPKP 152
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111
FPG + I+ ++ +++ +I+D V GF+G+ P PV DS++E I Q +
Sbjct: 153 VFPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAK 212
Query: 112 A-----------------------------------------------------AVQRPV 118
A +
Sbjct: 213 EAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATETKA 272
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V G FA F G +K ++ + ++ V +FG+ T VE+ N++
Sbjct: 273 KKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINEL 327
>gi|317494886|ref|ZP_07953297.1| transcriptional activator RfaH [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917211|gb|EFV38559.1| transcriptional activator RfaH [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 162
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLERAKEHLSRQ---------EIPCFTPMITLEKIVRGKRTQVKEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ T++ T V F+ G P + I+ +M + +
Sbjct: 55 MFIELDPERVHTTTVQSTRGVSHFVRFGALPVTIPFKVIKQLM--MAPPTECVDPDTP-A 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ G F F I D EK R + + + + + EK+
Sbjct: 112 PGDTVVITSGAFEGFEAIYTEADGEK-RAILLLNLLNKPVQQSVENTDFEKL 162
>gi|548392|sp|P36262|NUSG_LIBAS RecName: Full=Transcription antitermination protein nusG
gi|144455|gb|AAA23104.1| transcription antitermination protein [Candidatus Liberibacter
asiaticus]
gi|739022|prf||2002224A transcription antitermination protein
Length = 70
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE
Sbjct: 1 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 60
Query: 168 LAYNQVEKIV 177
LAYNQVEKIV
Sbjct: 61 LAYNQVEKIV 70
>gi|262402668|ref|ZP_06079229.1| transcriptional activator RfaH [Vibrio sp. RC586]
gi|262351450|gb|EEZ00583.1| transcriptional activator RfaH [Vibrio sp. RC586]
Length = 165
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ T + T++ T V+ F+ G +P + I + Q++ + VS
Sbjct: 53 SYMFVRFDFETGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIFQ-LKQLDCQQLKGVSKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I + D + R + V + + + +
Sbjct: 112 LPEKGQVVRVARGQFAGIEAIYQEPDGDT-RSIMLVKMISQQVSMSIE 158
>gi|157376165|ref|YP_001474765.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
gi|157318539|gb|ABV37637.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
Length = 179
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 23/185 (12%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A++++ + E +P+ V +KG+ + FP
Sbjct: 2 KAWYLLYCKPRGESRALQNL--TIQN-------IETYLPTIAVKKEQKGQVSVVKTSLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ IK + I T V+ +G E +P+ D I+ I Q S
Sbjct: 53 SYLFIKFDPKEVSVSRINSTRGVVQVVGCKELMTPIDDGIIDAIRQQEYELNSMTQGSTD 112
Query: 123 -------------FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
GE+V +++G F++ GI + +K R HV I G + V++
Sbjct: 113 IGSSSNEEFEPKVINPGEKVRLTEGVFSTLEGIFQEKSGDK-RCHVLFEIMGEMKSVKIP 171
Query: 170 YNQVE 174
+ V+
Sbjct: 172 MSIVK 176
>gi|311697218|gb|ADQ00090.1| transcriptional activator RfaH [marine bacterium HP15]
Length = 145
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
+ P V VR G++ F GY+ IK ++ ++ ++ T ++ +G G P+
Sbjct: 10 DCFHPKILVEKVRSGKRTQRLEPLFAGYLFIKLKPGEQNWNKLRSTRGILRIVGFGNTPA 69
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + I+ I A + + + G+ V + DGPF N I + D + R V
Sbjct: 70 TIDQTVIDQI----NARLASVTTQGGLKSGQAVELDDGPFKGLNAIFQCYDGD-ERAVVL 124
Query: 157 VVIFGR 162
+ +
Sbjct: 125 INFMQK 130
>gi|197336161|ref|YP_002155565.1| transcriptional activator RfaH [Vibrio fischeri MJ11]
gi|197317651|gb|ACH67098.1| transcriptional activator RfaH [Vibrio fischeri MJ11]
Length = 164
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ ++ L++ + E P V + +G++ ++ FP
Sbjct: 2 KEWYLLYCKRG---------EQERAKLHLENQMVECFYPEIVVEKIVRGKRKQAKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ I + +I+ T V F+ G P + I + ++ +
Sbjct: 53 CYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIYS-LKALDENNNKEKLEC 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
E G++V + GP++ I K D EK R + + + + +++ + +E
Sbjct: 112 LPEAGQKVAIKKGPYSGIEAIYKEADGEK-RSILLITLINKKVEIKIPNSDIE 163
>gi|42526227|ref|NP_971325.1| NusG family transcription antitermination protein [Treponema
denticola ATCC 35405]
gi|41816339|gb|AAS11206.1| transcription antitermination protein, NusG family [Treponema
denticola ATCC 35405]
Length = 175
Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 4/171 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y+VQV + EK +E + + D L I P + + G+ + F GY+
Sbjct: 4 YVVQVSTGKEKNFIEDAEFK---NKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFAGYL 60
Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
I ++ +Y ++ FL + P + + E + + +S V F+
Sbjct: 61 FIGTDEISKDLYQHLRKCKGFYRFLPNNQEPKFLEGRDFEILNQFISFGGLAKISQVVFD 120
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+R+ V +GP + G + V++ K R V + + ++L + + K
Sbjct: 121 ENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171
>gi|325473561|gb|EGC76754.1| NusG family Transcription antitermination protein [Treponema
denticola F0402]
Length = 175
Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 4/171 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y+VQV + EK +E + + D L I P + + G+ + F GY+
Sbjct: 4 YVVQVSTGKEKNFIEDAEFK---NKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFGGYL 60
Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
I ++ +Y ++ FL + P + + E + + +S V F+
Sbjct: 61 FIGTDEISKDLYQHLRKCKGFYRFLPNNQEPKFLEGRDFEILNQFISFGGLAKISQVVFD 120
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+R+ V +GP + G + V++ K R V + + ++L + + K
Sbjct: 121 ENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171
>gi|315647771|ref|ZP_07900872.1| putative transcription antitermination protein [Paenibacillus
vortex V453]
gi|315276417|gb|EFU39760.1| putative transcription antitermination protein [Paenibacillus
vortex V453]
Length = 192
Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V + E + R D+ + IP +V + + + FPGY
Sbjct: 3 WYALFVKTGYESSIKRWLDTR-----FDNNLLHSVIPKRKVPEKKDRTVQHVIKTLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTP---KVIGFLGTGENPSPVTD--------------------- 100
V I+ M+ +Y+T+K+ P + +L + S + D
Sbjct: 58 VFIETKMSFSIYYTLKENPFIYNTLNYLNNKDKRSTLPDVQMASVASERPAAESHFFKEI 117
Query: 101 --SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
E+ ++ + S V+F+ +V V GP +K VD+ K R V +
Sbjct: 118 PSEEMLVVLQLINENEVIEYSQVYFQ-DSKVIVQSGPLKGLESHIKKVDKHKKRAKVLMN 176
Query: 159 IFGRVTPVELAYNQVE 174
I G+ V++ +E
Sbjct: 177 IMGKEQLVDVGIEIIE 192
>gi|319952677|ref|YP_004163944.1| transcription antitermination protein nusg [Cellulophaga algicola
DSM 14237]
gi|319421337|gb|ADV48446.1| transcription antitermination protein nusG [Cellulophaga algicola
DSM 14237]
Length = 157
Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V V S EKK E + E+ P + V RK E F Y
Sbjct: 3 WYVVYVQSKKEKKVAEILQKMQ---------IEVYCPLIKEVKQWSDRKKTIESPLFKSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ + DK + D P V+ +L P+ V D EI I +E ++
Sbjct: 54 VFVR--LHDKERSNVFDVPGVVRYLFWLGQPAIVRDEEIAIIKKWLEDDTIEEITLHKLL 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G+ + + +GP I++ V +++ R+ +
Sbjct: 112 PGDEILIKNGPLKDKKAIIQEVGKKRIRLAI 142
>gi|313672417|ref|YP_004050528.1| nusg antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
gi|312939173|gb|ADR18365.1| NusG antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
Length = 164
Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E + + L+ +GL+ + P + + K FP Y
Sbjct: 3 WYLIYTKVKKE----DFLEQLLTEAGLE-----VLNPKIKKTKNVRNMKKEVIEPLFPCY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ +KA + + I+ T + +G G NP+ V I+ I +++ S F+
Sbjct: 54 IFVKADLNIHL-RIIRYTQGIRRLVG-GSNPTVVPIEIIDTIKSKMVDGFIDTKSE-EFK 110
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ + + DGPF F GI + + K RV + + + + + +EK+
Sbjct: 111 KGDTILIKDGPFKDFIGIFQEELDSKGRVSILLKTLALQPRITVDKDMIEKL 162
>gi|258622004|ref|ZP_05717033.1| transcriptional activator RfaH [Vibrio mimicus VM573]
gi|258585757|gb|EEW10477.1| transcriptional activator RfaH [Vibrio mimicus VM573]
Length = 165
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQDVECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ + + T++ T V+ F+ G +P + I + Q++ +
Sbjct: 53 SYMFVRFDFEEGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLEGSAKQ 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I + D + R + V + + P+ +
Sbjct: 112 LPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPMSIE 158
>gi|253991350|ref|YP_003042706.1| transcriptional activator RfaH [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782800|emb|CAQ85965.1| transcriptional activator rfah [Photorhabdus asymbiotica]
Length = 162
Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A+E++ + P+ R+ + +G++ + FP Y
Sbjct: 4 WYLIYCKRGQISRAIENLER-------QDVA--CLTPTARIEKITRGKRTVNTEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V ++ I+ I++ E P + V
Sbjct: 55 LFVQFDP--EVIHTTTINSTRGVSHFVRFGVHPAIVPETLIKEIVSATEQEYVSPDTPVA 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V +++G F I D E R + + I R P L Q KI
Sbjct: 113 ---GDTVLITEGIFEGLQAIYNEPDGET-RSILLLNILNRQLPKALDNKQFVKI 162
>gi|254509311|ref|ZP_05121402.1| transcriptional activator RfaH [Vibrio parahaemolyticus 16]
gi|219547769|gb|EED24803.1| transcriptional activator RfaH [Vibrio parahaemolyticus 16]
Length = 165
Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ + ++ L++ E P ++ + +G++ + FP
Sbjct: 2 KQWYLLYCK---------RSEQQRAKMHLENQGVECYYPEIQIEKMVRGKRQVKKEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ + + + TI+ T V+ F+ G P + I + ++E + + +
Sbjct: 53 SYIFARFDVEQGPTFTTIRSTRGVVDFVRRGALPQILQGDLIVT-LKEIETEQEGLMQAG 111
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
E G+ V V+ G FA I + D E+ R + V + + V +
Sbjct: 112 LPEKGDTVNVATGQFAGMEAIYQEPDGER-RSILLVNMLSKQVEVTVD 158
>gi|159184310|ref|NP_353481.2| transcription antitermination protein [Agrobacterium tumefaciens
str. C58]
gi|159139634|gb|AAK86266.2| transcription antitermination protein [Agrobacterium tumefaciens
str. C58]
Length = 188
Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKV-NSERRF 60
W++V+ EK +++ +G+ ++ +P E + V +GR + R
Sbjct: 13 HEWFVVETKHKAEKAVEDALRK----AGV-----KVFLPLETIGETVVRGRIIPAVSRPL 63
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
PGYVL+ V + I V GF+G +P V+D E+ + V
Sbjct: 64 LPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMVHPHRVSDEEMNRFKAFGDDETAPDVKH 123
Query: 121 VF-FEVGERVCVSDGPFASFNGIVKNVDEEKSR--------VHVEVVIFGRVTPVELAYN 171
F+ G++V GPFASF G + + ++++ V V +FG+V+ +E
Sbjct: 124 CEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAPLA 183
Query: 172 QVEKI 176
+E++
Sbjct: 184 LLEQL 188
>gi|77165942|ref|YP_344467.1| transcriptional activator RfaH [Nitrosococcus oceani ATCC 19707]
gi|76884256|gb|ABA58937.1| Transcriptional activator RfaH [Nitrosococcus oceani ATCC 19707]
Length = 174
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ + WY++ E RL++ L+ E +P R + R R++ +
Sbjct: 7 SKKFWYLIYCKPRQE---------RLAQENLERQNFETYLPLVRQMRRRAYRRIATVEPL 57
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP Y+ I + +I+ T VI + G P+ V D+ I + + + ++S
Sbjct: 58 FPRYLFIHLDTEKDNWGSIRSTIGVISLVRFGAQPAHVPDTLIRELQTHEGSDGIQDLAS 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G++V V +G A GI + K R H+ + I G+ E+ N ++++
Sbjct: 118 PDFRKGQQVLVEEGLLAGHEGIWLTSNG-KKRAHILLEIMGKQIKTEVNENWLKRL 172
>gi|294637995|ref|ZP_06716260.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685]
gi|291088867|gb|EFE21428.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685]
Length = 163
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 13/173 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + V +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLERAREHLTRQA---------IPCVTPMIALEKVVRGKRTQVQEPMFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ T++ T V F+ G+ P+ V I+ +M A P + +
Sbjct: 55 MFIELDPERIHTTTVQSTRGVSHFIRFGKRPATVPFRVIKQLMTAPMATAAAPQTPM--- 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+RV + G F+ I + D EK R + + + + + EKI+
Sbjct: 112 PGDRVRILQGAFSGLEAIYRESDGEK-RAILLLNLLNQEVSQSVDNGDFEKIL 163
>gi|220923469|ref|YP_002498771.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219948076|gb|ACL58468.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 178
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
W++VQ E++ VE + + + +P RV +VR+GRKV+ + F
Sbjct: 5 AKTWFVVQTGPARERRVVELLAREGA---------DTWLPLFRVTTVRRGRKVDDFEKVF 55
Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-------E 111
YV M + + D V+ LG + P P ++ + +++
Sbjct: 56 ASYVFAGLDEETMRRRGTSVLFDCDHVLDVLGV-DRPLPFPADALQVLADRLAGHNRDET 114
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+R + +VGE + +GPF SF V+ V + V IFGR+TPVE +
Sbjct: 115 EEGRRRTEAAKIQVGEMRRIINGPFMSFFAEVEEVLS-NGIIKAGVRIFGRITPVEFTPD 173
Query: 172 QVE 174
Q++
Sbjct: 174 QLD 176
>gi|309777610|ref|ZP_07672562.1| putative transcription antiterminator [Erysipelotrichaceae
bacterium 3_1_53]
gi|308914699|gb|EFP60487.1| putative transcription antiterminator [Erysipelotrichaceae
bacterium 3_1_53]
Length = 176
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ V EKK +E + + + + + P + VV +G++V ++
Sbjct: 1 MMKPWYVLYVMGGREKKILELLNQK------EDV--KAFTPLKEVVHRIQGKRVIVKKPL 52
Query: 61 FPGYVLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
FP YV ++ + + ++ L + S ++ E ++ ++
Sbjct: 53 FPSYVFVETELNPTGFQQALIQYRSQISGILKELKYENDISALSAEERAYLEGLMDREHN 112
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+S GE V +++GP + + +D K R + V + R V+++ V+K
Sbjct: 113 VRLSKGEILDGE-VIITEGPLKGYESNIIRIDRHKRRAILNVQMNERKLQVDVSLEIVKK 171
Query: 176 I 176
I
Sbjct: 172 I 172
>gi|183597388|ref|ZP_02958881.1| hypothetical protein PROSTU_00645 [Providencia stuartii ATCC 25827]
gi|188023415|gb|EDU61455.1| hypothetical protein PROSTU_00645 [Providencia stuartii ATCC 25827]
Length = 163
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ I + +++ P + V +G++ + FP
Sbjct: 3 KWHLLYCKRGQ-------IDRAIEHLNRQNVI--CMTPMTEIEKVVRGKRTKVQEPLFPN 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K + TI+ T V F+ G +P+ V D EI ++ Q +
Sbjct: 54 YLFVKFDHNEIHTTTIQSTRGVSHFVRFGLHPAIVPD-EIIELLQQAPLGHLVDPETPT- 111
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V +++G FA I + E SR + + I + L Q +K+
Sbjct: 112 -HGDNVLITEGIFAGIQAIYDEPNGE-SRSILLLNILNKNVSKVLDNTQFKKL 162
>gi|254797036|ref|YP_003081873.1| putative transcription termination/antitermination factor NusG
[Neorickettsia risticii str. Illinois]
gi|254590275|gb|ACT69637.1| putative transcription termination/antitermination factor NusG
[Neorickettsia risticii str. Illinois]
Length = 173
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +++V S E K + I R V ++ P+ ++ +RF PGY
Sbjct: 9 WCVLRVRSGSESKVCDLIKSRC-----SDKVVDLFSPALIRFDA------SASKRFLPGY 57
Query: 65 VLIKAVMTDKVYHTI---KDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
+ IK + + + + FL +P ++D +I+ + N + + + S
Sbjct: 58 IFIKVAPGSTFLNEVSIMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFM-LSPEVAPES 116
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG RV + F + G V +DE S+ V++V G+ V +Q++ +
Sbjct: 117 GKISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 172
>gi|237807394|ref|YP_002891834.1| transcriptional activator RfaH [Tolumonas auensis DSM 9187]
gi|237499655|gb|ACQ92248.1| transcriptional acivator RfaH [Tolumonas auensis DSM 9187]
Length = 167
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 10/161 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+ E++A + G+D + + +G+ + FP
Sbjct: 2 KHWYLAYCRPKEEERAKLHLR----NQGVDSYYPLVL-----TRKIIRGKAMEKIEPMFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + + ++ T + +G G V + +M ++ R V S
Sbjct: 53 RYLFVHMDIEEFSPLKVRSTRGIHHIVGHGSTWDKVPAELVYQLMRNEDSDESRDVVSRL 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G+ V ++GPF I + D R + + I +
Sbjct: 113 PKTGQMVIFNEGPFEGLQAIYQEPDG-NQRAFLLLSILNQD 152
>gi|189218043|ref|YP_001938685.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum
infernorum V4]
gi|189184901|gb|ACD82086.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum
infernorum V4]
Length = 185
Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 1 MTPRW------YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
M RW Y + + EK AVE++ E+ P + +R +
Sbjct: 1 MEKRWSEQSFWYCLSIQPKKEKLAVENLKKEN---------IEVFFPQFQYQKIRSRKTS 51
Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAA 113
FPGY+ K + K+ ++ T V + G + + DS IE + Q E
Sbjct: 52 LVLEPLFPGYLFAKFNLYSKL-TFVRSTKGVRKVVHFGSSYPVIPDSFIEELRIQFGEEG 110
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
++ + VG + +++GPF ++ IV K RV V + GR +E+ ++
Sbjct: 111 IKTIRERID--VGSTINIAEGPFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168
>gi|189499920|ref|YP_001959390.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
gi|189495361|gb|ACE03909.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
Length = 169
Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 11/151 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK + R S +P RK F GY
Sbjct: 9 WYAVYVRSRFEKKIHQLFEDRGITS---------FLPLVDTWRQWSDRKKKVSMPLFKGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ ++TI +T V+ F+G PS + D +IE I V
Sbjct: 60 VFVRINFRKD-HYTILETDGVVKFIGIRNVPSVIRDRDIEWIKILVGEPDSLRNVLPEMP 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G+RV V GPF G+++ + +++ V
Sbjct: 119 AGQRVKVIAGPFVGLEGVIRKEGRD-AKLVV 148
>gi|86144030|ref|ZP_01062368.1| NusG antitermination factor [Leeuwenhoekiella blandensis MED217]
gi|85829490|gb|EAQ47954.1| NusG antitermination factor [Leeuwenhoekiella blandensis MED217]
Length = 158
Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V EKK ++ L ++ P+ V V RK + F Y
Sbjct: 3 WYVLYVKPQSEKKVASALEK---------LGVKVFCPTLEEVRVWSDRKKKIQVPLFKSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + + + + P V+ +L P+ V D EI I + + V +
Sbjct: 54 VFV--CLPNTERQQVFAVPGVVRYLFWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRTYT 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G V ++ G F GIV+ V ++ ++ +
Sbjct: 112 PGTEVKIAAGHFKGQKGIVQEVGRKRLKMVI 142
>gi|300724670|ref|YP_003713995.1| lipopolysaccharide core, F pilin, and hemolysin export
transcriptional activator [Xenorhabdus nematophila ATCC
19061]
gi|297631212|emb|CBJ91907.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
haemolysin [Xenorhabdus nematophila ATCC 19061]
Length = 162
Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A+E++ + P+ ++ V +G++ FP Y
Sbjct: 4 WYLLYCKRGQVSRAIENLERQDVT---------CLTPTAKIEKVIRGKRTTITEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ + +V H T+ T V F+ P+ V + I+ +M+ E Q VS
Sbjct: 55 LFVHFDP--EVIHTTTVNSTRGVNNFIRFSTYPAIVPQALIDELMSVTE---QEYVSPET 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V +++G F I D E R + + I + L Q K+
Sbjct: 110 PMTGDTVLITEGIFEGIQAIYNEPDGET-RSILLLNILNKEVSKTLDNKQFIKV 162
>gi|323138187|ref|ZP_08073260.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
gi|322396649|gb|EFX99177.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
Length = 186
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+ Q + E A + + + P + FPG
Sbjct: 25 RWYVAQTLARREAGAGAQLVAQ---------GFAVFTPQVIKTVRHARKLRTVRAPAFPG 75
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ + + + ++ T V + + P PV +E ++ V+ A
Sbjct: 76 YLFVILDLNRDRWRSVNGTFGVARMIMGEDVPMPVPAGVVETLLGYVDEAGVC-RFDRDL 134
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
G+ V V+ GPFA G + +D RV V + I G P L
Sbjct: 135 VEGQAVRVTVGPFAQAIGELVRLDA-NGRVRVLLEIMGGKIPATLE 179
>gi|146298121|ref|YP_001192712.1| NusG antitermination factor [Flavobacterium johnsoniae UW101]
gi|146152539|gb|ABQ03393.1| transcription antitermination protein nusG [Flavobacterium
johnsoniae UW101]
Length = 154
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V EKK E + + E P V RK E F Y
Sbjct: 3 WYVVYTKPKWEKKVAEKLTQ---------IGIECYCPLITQVKQWSDRKKKVEMPLFNSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V I+ D +++ + ++ +L P+ V D EI I N ++A+ +S +
Sbjct: 54 VFIQIE--DADRNSVFEVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVSQIQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
VG+++ + G F++ N IV+ V + + +E
Sbjct: 112 VGDKIKLETGAFSNQNAIVQEVSKTHYILVLE 143
>gi|307133036|ref|YP_003885052.1| transcription antiterminator protein [Dickeya dadantii 3937]
gi|4163101|emb|CAA10615.1| transcriptional activator [Erwinia chrysanthemi]
gi|306530565|gb|ADN00496.1| transcription antiterminator protein [Dickeya dadantii 3937]
Length = 162
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 13/171 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + +V P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLER-------QDVV--CLSPMIALEKIVRGKRTEVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ V I+ ++ A P +
Sbjct: 55 LFVEFDPEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIDDLLQHPCATHIDPE---MPQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G++V +++G F+ I D E +R + + + + + Q K
Sbjct: 112 PGDQVTITEGVFSGLQAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRK 161
>gi|261885758|ref|ZP_06009797.1| transcription antitermination protein NusG [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 77
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY +Q Y+ E +I + G++ + E+ +P+E V+ ++ G++ +E
Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINEESL 60
Query: 61 FPGYVL 66
+PGY
Sbjct: 61 YPGYAF 66
>gi|304310243|ref|YP_003809841.1| Transcriptional activator RfaH [gamma proteobacterium HdN1]
gi|301795976|emb|CBL44177.1| Transcriptional activator RfaH [gamma proteobacterium HdN1]
Length = 157
Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++Q + E A ++ R G P +V + G+ +
Sbjct: 1 MA--WYLMQTRPHQETLAATNLL----RQGYG-----CYQPIHQVEKLIAGKLCMKDEAL 49
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+ ++ + + TI+ T V + G PV++ I + + E +
Sbjct: 50 FPGYLFVEIA-AQQSWCTIRSTYGVRSLVCFGGKALPVSELLISQLRARCETEQAQCR-- 106
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
F G+ V V GPFA N + + E RV V + + V +EL
Sbjct: 107 --FTKGQSVEVKKGPFAGLNAVFQCKKAE-DRVIVLIRLLQSVQAIEL 151
>gi|26554337|ref|NP_758271.1| transcription antitermination factor [Mycoplasma penetrans HF-2]
gi|26454346|dbj|BAC44675.1| transcription antitermination factor [Mycoplasma penetrans HF-2]
Length = 348
Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 69/232 (29%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV------------- 48
+WYIV + E ++I ++ L ++V E+ + R +++
Sbjct: 17 EAKWYIVTSINGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPINNPPPSR 76
Query: 49 ---------------RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-- 91
R + E FPGY+ IK +M D ++ I++T V GF+G+
Sbjct: 77 FRNTKSITWETLPGGRYKKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVGSSG 136
Query: 92 -GENPSPVTDSEIEHIMN---------------QVEAAVQRPVSS----VFFEVGERVCV 131
G P P++D E+ ++ N VE V +P + F + G +
Sbjct: 137 KGAKPIPMSDIEVANLFNPEMNQDIIINKTSDVFVEQTVSKPREAEKRIEFLDSGNNLVD 196
Query: 132 SDGPF--------ASFNG------IVKNVDEEKSRVHVEVVIFGRVTPVELA 169
DG F V++ + E+ V V + + T VE+
Sbjct: 197 KDGFFNSNLNQENKGEEASSESTENVESSNVEE----VSVSM-DQSTNVEVD 243
Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F VG V + + G+++++D EK + V V I G+ T V++ ++++ K
Sbjct: 294 FAVGNTVEILVESMQGYEGVIESIDLEKDKAKVLVDILGKETIVDVHFSEIRK 346
>gi|300113352|ref|YP_003759927.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
gi|299539289|gb|ADJ27606.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
Length = 174
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ + WY++ E RL++ L+ E +P R + R R++ +
Sbjct: 7 SKKFWYLIYCKPRQE---------RLAQENLERQSFETYLPLVRQMRRRAYRRIATVEPL 57
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FP Y+ + + +I+ T VI + G P+ V D+ I + + ++
Sbjct: 58 FPRYLFVHLDAEKDDWGSIRSTIGVISLVRFGAQPAQVPDTLISELQAHDAPDGIQNLAR 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F+ G++V V +G A GI + K R H+ + I G+ E+ N ++++
Sbjct: 118 PGFQKGQQVLVEEGLLAGHEGIWLTSNG-KERAHILLEIMGKQIKTEVNENWLKRL 172
>gi|291326731|ref|ZP_06125611.2| transcriptional activator RfaH [Providencia rettgeri DSM 1131]
gi|291313040|gb|EFE53493.1| transcriptional activator RfaH [Providencia rettgeri DSM 1131]
Length = 169
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 13/172 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ I + ++V P + V +G++V + FP
Sbjct: 8 KWYLLYCKRGQ-------IERAMEHLNRQNVV--CMTPMTEMEKVVRGKRVTVQEALFPN 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K + TI+ T V F+ G+ P+ V + EI ++ Q V V+
Sbjct: 59 YLFVKFDHNEIHTTTIQSTRGVSHFIRFGQFPTEVPE-EIIELLQQT--PVSYSVAPDIP 115
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G++V +++G FA I + E R + + I + P + Q +K
Sbjct: 116 KHGDQVTITEGIFAGVQAIFDEPNGE-YRSILLLNILNKSVPKVVDNTQFKK 166
>gi|256421399|ref|YP_003122052.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256036307|gb|ACU59851.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 185
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 13/155 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
T WY V EKK +++ ++ P RV RK E
Sbjct: 5 THTWYAVYTKPRWEKKVADALVRKQIET----------YCPINRVTHQWSDRKKIVEEPL 54
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
F YV ++ + +++T ++ F+ P+ + D E+E I + V
Sbjct: 55 FKSYVFVRI--PEDKKTLVRETSGIVNFVYWLGKPASIPDHEVELIKRFLREYQDVQVER 112
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ + + ++ GP +G V + + +
Sbjct: 113 FPIQEDDLIRITAGPLMHQHGRVVEAGKNTVKAVL 147
>gi|94967916|ref|YP_589964.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
gi|94549966|gb|ABF39890.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
Length = 182
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 15/173 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFFPG 63
W+ VQ EK+ E + E +P R V + G FPG
Sbjct: 14 WFAVQTRHRHEKRVAERLRQ---------SEIETFLPIHRAVHRWKNGINAEVNLPLFPG 64
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ + + ++ + P VI + +P+P+ D+EI + E+ P F
Sbjct: 65 YLFTRLRGSQRI--PLLREPGVIAIAASSNSPTPIGDNEIAQLRLVAESVKAEPHP--FL 120
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G++V V GP GI+ E RV V V I R V+++ ++E +
Sbjct: 121 AIGQQVKVVAGPLFGMEGILIRKKSE-YRVVVSVKIIMRSVAVDVSELEIEPV 172
>gi|21593340|gb|AAM65289.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 67/235 (28%)
Query: 3 PRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSERR 59
P+W+ V+V E I R + + PS +V ++ G +
Sbjct: 96 PQWWAVRVSRLRGHET---AQILARALARQFPEMEFTVYAPSVQVKRKLKNGSISVKPKP 152
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGF----LGTG----ENPSPVTDSEIEHIMNQVE 111
FPG + I+ ++ +++ +I+D V GF +G P PV DS++E I Q +
Sbjct: 153 VFPGCIFIRCILNKEIHDSIRDVDGVGGFIVSKVGNTKRQINKPRPVDDSDLEAIFKQAK 212
Query: 112 A-----------------------------------------------------AVQRPV 118
A +
Sbjct: 213 EAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATETKA 272
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V G FA F G +K ++ + ++ V +FG+ T VE+ N++
Sbjct: 273 KKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINEL 327
>gi|290473588|ref|YP_003466458.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Xenorhabdus bovienii SS-2004]
gi|289172891|emb|CBJ79662.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
haemolysin [Xenorhabdus bovienii SS-2004]
Length = 162
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A+ + ++ P+ ++ + +G++ FP Y
Sbjct: 4 WYLLYCKRGQISRAIGHLER-------QDVI--CLTPTAKIEKIVRGKRTTVTEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ + ++ H TI T V F+ P+ V + I+ +M+ E P + +
Sbjct: 55 LFVNFDP--EIIHTTTINSTRGVNHFIRFSTYPAVVPQTLIDELMSATEQEYIAPETPIT 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V +++G F I D E R + + I + L Q KI
Sbjct: 113 ---GDTVLITEGIFEGIQAIYNEPDGET-RSILLLNILNKEVSKILDNKQFIKI 162
>gi|271498773|ref|YP_003331798.1| NusG antitermination factor [Dickeya dadantii Ech586]
gi|270342328|gb|ACZ75093.1| NusG antitermination factor [Dickeya dadantii Ech586]
Length = 162
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + +V P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLER-------QDVV--CLSPMIALEKIVRGKRTEVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ V IE + + P + +
Sbjct: 55 LFVEFDPEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIEDLQHHQCTTHVDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V +++G F+ I D E +R + + + + + Q K+
Sbjct: 112 PGDQVTITEGVFSGLEAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRKV 162
>gi|171910013|ref|ZP_02925483.1| NusG antitermination factor [Verrucomicrobium spinosum DSM 4136]
Length = 158
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
E P R KV FP Y + V + + + +K T VI +G G +P+
Sbjct: 8 ETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYS-EAHRAVKHTHNVIRIVGFGGDPA 66
Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
P+ D IE++ +++ A R V EVG+ V V++GP G+V+++ + RV +
Sbjct: 67 PIPDLTIENLREEMQGAELREV-KYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKLL 125
Query: 157 VVIFGRVTPVEL 168
+ GR + VE+
Sbjct: 126 LEFLGRQSLVEV 137
>gi|37528234|ref|NP_931579.1| transcriptional activator RfaH [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787671|emb|CAE16778.1| Transcriptional activator RfaH [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 162
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A+E++ + P+ R+ + +G++ + FP Y
Sbjct: 4 WYLIYCKRGQISRAIENLER-------QDVA--CLTPTARIEKITRGKRTVNIEPLFPHY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ ++ H TI T V F+ G +P+ V ++ I+ I++ E P + V
Sbjct: 55 LFVQFDP--EIIHTTTIHSTRGVSHFVRFGVHPAIVPETLIKEIVSATEQEYVSPDTPVA 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++ G F I D E R + + I + P L Q KI
Sbjct: 113 ---GDTVLITAGIFEGLQAIYNEPDGET-RSILLLNILNKQLPKALDNKQFVKI 162
>gi|220927662|ref|YP_002504571.1| NusG antitermination factor [Clostridium cellulolyticum H10]
gi|219997990|gb|ACL74591.1| NusG antitermination factor [Clostridium cellulolyticum H10]
Length = 188
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V S E + + + + ++ + P + G + FPGY
Sbjct: 17 WYVLFVKSGREHRVEQYLKKIVGIDMINPFI-----PLHEFLFKISGTVKRELKPLFPGY 71
Query: 65 VLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V I++ M + +Y+ I ++ L + V DSE + ++ + S
Sbjct: 72 VFIESDMAGQEFIRKLYNKIYLLSDIVRILKYSDTEIAVRDSE-KQMLLDLCNNEHCIES 130
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
S G+R+ +++GP I+K V+ K + VE+ G V +A VEK+V
Sbjct: 131 SRGVIKGDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVEKVV 188
>gi|293393998|ref|ZP_06638304.1| transcriptional activator RfaH [Serratia odorifera DSM 4582]
gi|291423558|gb|EFE96781.1| transcriptional activator RfaH [Serratia odorifera DSM 4582]
Length = 162
Score = 87.5 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAQEHLERQAVN---------CLSPIITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ + IE + + P + +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSHFVRFGSLPTMIPLKVIEELRAHTSDSYVDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++DG F + I D E +R + + + + L Q EK+
Sbjct: 112 PGDTVLITDGVFEGLHAIYTEPDGE-ARSMLLLNLINKQVTQSLDNRQFEKM 162
>gi|283834601|ref|ZP_06354342.1| transcriptional activator RfaH [Citrobacter youngae ATCC 29220]
gi|291069730|gb|EFE07839.1| transcriptional activator RfaH [Citrobacter youngae ATCC 29220]
Length = 162
Score = 87.5 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + IP + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLIPMITLEKMVRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G P+ V I + + P +
Sbjct: 55 MFVEFDP--EVIHTTTINATRGVSHFVRFGAAPATVPSPVIHQLSIYKPEGIVDPET--- 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E +R + + + +
Sbjct: 110 PHPGDSVIITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKEV 150
>gi|163757089|ref|ZP_02164194.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1]
gi|161322989|gb|EDP94333.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1]
Length = 188
Score = 87.1 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 14/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
W+++ EKKA L++ E+ +P + + + + +K + F
Sbjct: 27 RNWFVLYTAPRAEKKAK---------LELEYRGYEVFLPMTKSLRIWKNRQKKLIDSVLF 77
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ +K ++ I K+ ++ G P V+ IE I + + V +
Sbjct: 78 PSYIFVKTD--ERYLAEICRINKIATYIHCGGKPCKVSPECIEAIKCMLSMDQEISVGN- 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
F GE V + +GP A +NG V + K++ + + +V +E+ + +EK
Sbjct: 135 DFIEGESVRIVEGPLAGYNG-VLVQQKSKTKFGIHLKEINQVASIEICTSALEK 187
>gi|152972825|ref|YP_001337971.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238892438|ref|YP_002917172.1| transcriptional activator RfaH [Klebsiella pneumoniae NTUH-K2044]
gi|262040850|ref|ZP_06014076.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329997403|ref|ZP_08302765.1| transcriptional activator RfaH [Klebsiella sp. MS 92-3]
gi|150957674|gb|ABR79704.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238544754|dbj|BAH61105.1| transcriptional activator [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259041739|gb|EEW42784.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328539090|gb|EGF65127.1| transcriptional activator RfaH [Klebsiella sp. MS 92-3]
Length = 162
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + +P+ + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLMPTIALEKIIRGKRTMVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ +V H TI T V F+ G P+ V + I + + P +
Sbjct: 55 LFIEFDP--EVIHTTTISATRGVNNFVRFGALPAIVPSAVIHQLSIYKPEGITDPET--- 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++DG F I D E +R + + + + + +KI
Sbjct: 110 PHEGDSVLITDGAFEGLEAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTDFQKI 162
>gi|242241150|ref|YP_002989331.1| transcriptional activator RfaH [Dickeya dadantii Ech703]
gi|242133207|gb|ACS87509.1| transcriptional acivator RfaH [Dickeya dadantii Ech703]
Length = 162
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQ---------FVTCLSPMITLEKIVRGKRTEVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ T+ T V F+ G P+ V IE + + + P + +
Sbjct: 55 LFVEFDPERIHTTTVNSTRGVSHFVRFGAMPAIVPSQVIEDLQSHQTEKIIDPDT---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+RV +++G F+ I + E +R + + + + L Q K+
Sbjct: 112 PGDRVVITEGVFSGLQAIYAEPNGE-ARSMLLLNLLNKQVRQCLDNRQFRKM 162
>gi|320088389|emb|CBY98149.1| Transcription antitermination protein nusG [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 186
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ + FP Y
Sbjct: 28 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 78
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I + V P +
Sbjct: 79 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPY- 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E R + + + +
Sbjct: 136 --PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEV 174
>gi|222148453|ref|YP_002549410.1| Transcription antiterminator protein [Agrobacterium vitis S4]
gi|221735441|gb|ACM36404.1| Transcription antiterminator protein [Agrobacterium vitis S4]
Length = 218
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRK-VNSERRF 60
RW + S E ++ R LD E P ER R+G++ V +R
Sbjct: 48 ARWVVASCKSGME---------QVIRDSLDQQGIECWCPCERHKWPPRRGKQAVEIQRAL 98
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
F GY+ +K + ++ + + K+ G +G P + + + +M + A ++
Sbjct: 99 FRGYLFVKVIPDNEAFVGLMLASKLRGLMGKDGKPHLMPEPLMRQLMLSAKKAERKHMDV 158
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V + +G++V + GPFA F V+ V ++ +V V+V +FG ++ + + +
Sbjct: 159 GDVPPMPDVLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEITMGID 214
>gi|161505515|ref|YP_001572627.1| transcriptional activator RfaH [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160866862|gb|ABX23485.1| hypothetical protein SARI_03680 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 186
Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ + FP Y
Sbjct: 28 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 78
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I + V P +
Sbjct: 79 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPY- 135
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E R + + + +
Sbjct: 136 --PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEV 174
>gi|283787486|ref|YP_003367351.1| transcriptional activator [Citrobacter rodentium ICC168]
gi|282950940|emb|CBG90617.1| transcriptional activator [Citrobacter rodentium ICC168]
Length = 162
Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKMVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + + P +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPATVPSAVIHQLSVYKPEGIVDPETPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E R + + + +
Sbjct: 112 --PGDSVIITEGAFEGLQAIFTEPDGET-RSMLLLNLLNKEV 150
>gi|237727954|ref|ZP_04558435.1| transcriptional activator RfaH [Citrobacter sp. 30_2]
gi|226910403|gb|EEH96321.1| transcriptional activator RfaH [Citrobacter sp. 30_2]
Length = 162
Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKIVRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G P+ V I + + P +
Sbjct: 55 MFVEFDP--EVIHTTTINATRGVSHFVRFGATPATVPSPVIHQLSIYKPEGIVDPQT--- 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ G+ V +++G F I D E +R + + + +
Sbjct: 110 PQPGDSVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKEV 150
>gi|256424177|ref|YP_003124830.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256039085|gb|ACU62629.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 170
Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + EKK + RLS + + P R++ RK E FP Y
Sbjct: 8 WYALYTMPRHEKK----LHTRLSELNVTSFL-----PMTRMLRTWHDRKKYVEMPLFPSY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + Y+ + +T + ++ TG S +++ I +I E + +S+ +F
Sbjct: 59 IFVYLN-NIEHYYNVLNTNGALYYVKTGNELSRISEQIIHYIRIVSEQSTGIELSADYFP 117
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
G+ + +S GP A F+ V + + ++ V V + R
Sbjct: 118 PGKELLISSGPLAGFSCEVVSY-KNSEKILVRVSLLQRS 155
>gi|157368505|ref|YP_001476494.1| transcriptional activator RfaH [Serratia proteamaculans 568]
gi|157320269|gb|ABV39366.1| transcriptional acivator RfaH [Serratia proteamaculans 568]
Length = 162
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G+++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAQEHLERQEVN---------CLSPIITLEKIVRGKRIAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ + IE + P + +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSHFVRFGSTPTTIPQKVIEELQTHTCETYVDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + DG F I D E +R + + + + + Q +K+
Sbjct: 112 PGDSVLIVDGVFEGLQAIYTEPDGE-ARSMLLLNLINKQVSQSVDNRQFQKL 162
>gi|226943708|ref|YP_002798781.1| transcriptional activator RfaH [Azotobacter vinelandii DJ]
gi|226718635|gb|ACO77806.1| transcriptional activator RfaH [Azotobacter vinelandii DJ]
Length = 153
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
Q +++A +++ R G ++ + ER++ G FPGY+ I+
Sbjct: 2 QCKPRQDERAEDNL----KRQGYEYFRPQCL--RERLM---HGALRVQSESLFPGYLFIR 52
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
D + ++ T V + G+ P V+D + + ++E++ + G+R
Sbjct: 53 LA-ADANWAPLRSTRGVSRLVSFGDMPLSVSDELVAELQRRIESS-----PEPALKPGDR 106
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V + G F + I +D E RV + + + R + L + K
Sbjct: 107 VRIIAGSFTELDAIFLALDGE-ERVTLLMRLLHREHRLSLPLADIRK 152
>gi|322834842|ref|YP_004214869.1| transcriptional acivator RfaH [Rahnella sp. Y9602]
gi|321170043|gb|ADW75742.1| transcriptional acivator RfaH [Rahnella sp. Y9602]
Length = 179
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +GR+ FP Y
Sbjct: 21 WYLLYCKRGQLLRAKEHLERQNVN---------CLTPMITLEKLVRGRRTAVSEPLFPNY 71
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ TI T V F+ G + V I+ +M ++ +E
Sbjct: 72 MFIEFDPERIHTTTINATRGVSHFIRFGAKLATVQPDVIKQLMEP--PTIEIRDPDTPYE 129
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V ++DG FA I D E + + + + + + +KI
Sbjct: 130 -GDQVVITDGIFAGIEAIYTEPDGEARSL-LMLNLINQPVRQSIENTHFQKI 179
>gi|169839653|ref|ZP_02872841.1| Transcription antitermination protein nusG [candidate division TM7
single-cell isolate TM7a]
Length = 104
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKA--------- 69
+ R+ L V I +P E V+ ++G+ V R+ FP YV+I+
Sbjct: 2 AADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLFPSYVMIEMLSVREENEL 61
Query: 70 ----VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
+ ++ I++T V GF+G G +P P++D E +++
Sbjct: 62 GLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEATDLLS 104
>gi|194334318|ref|YP_002016178.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
gi|194312136|gb|ACF46531.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 172
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 55/151 (36%), Gaps = 11/151 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V V S EKK L +P RK F GY
Sbjct: 9 WYAVYVRSRFEKKV---------HLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGY 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ + + DT V+ F+G G S + D +IE I R
Sbjct: 60 VFVRIHYRQD-HPFVLDTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLP 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G++V V GPF G+V+ D +S++ V
Sbjct: 119 PGKQVKVIAGPFVGLEGVVRK-DGRESKLVV 148
>gi|254039053|ref|ZP_04873104.1| transcriptional activator [Escherichia sp. 1_1_43]
gi|226838744|gb|EEH70772.1| transcriptional activator [Escherichia sp. 1_1_43]
Length = 162
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|227327314|ref|ZP_03831338.1| transcriptional activator RfaH [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 162
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQDVN---------CVSPMITLDKIVRGKRTEVCEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ + I+ + + + P + +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPIQGITDP---LTPQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V ++DG F+ I D E +R + + + +
Sbjct: 112 PGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQV 150
>gi|255530460|ref|YP_003090832.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366]
gi|255343444|gb|ACU02770.1| NGN domain protein [Pedobacter heparinus DSM 2366]
Length = 168
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+V Y N E+KA+ ++ ++ + +P ++V RK E F
Sbjct: 7 EKNWYVVVTYPNLERKALLNLLK-------NNFI--AFLPLQKVQRKWSDRKKTIEIPLF 57
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ I D+ D V ++ G P+ +++++I +I VE+ S
Sbjct: 58 PNYLFININEKDRFEAL--DIYGVKRYVTFGGRPAFISETDILNIKRIVESVDLYIEHS- 114
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + GPF GI+ ++R + V + +E+ + + K+
Sbjct: 115 -LVKGDAVKIIGGPFKDMIGILFKKSG-QARFGIRVESMNQTLSIEICHTLIRKV 167
>gi|206576966|ref|YP_002241095.1| transcriptional activator RfaH [Klebsiella pneumoniae 342]
gi|288937740|ref|YP_003441799.1| transcriptional acivator RfaH [Klebsiella variicola At-22]
gi|290513135|ref|ZP_06552497.1| transcriptional activator RfaH [Klebsiella sp. 1_1_55]
gi|206566024|gb|ACI07800.1| transcriptional activator RfaH [Klebsiella pneumoniae 342]
gi|288892449|gb|ADC60767.1| transcriptional acivator RfaH [Klebsiella variicola At-22]
gi|289774346|gb|EFD82352.1| transcriptional activator RfaH [Klebsiella sp. 1_1_55]
Length = 162
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + +P+ + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLMPTIALEKIIRGKRTMVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ +V H TI T V F+ G P+ V + I + + P +
Sbjct: 55 LFIEFDP--EVIHTTTISATRGVNNFVRFGALPAVVPSAVIHQLSIYKPEGITDPET--- 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++DG F I D E +R + + + + + +KI
Sbjct: 110 PHEGDSVLITDGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTDFQKI 162
>gi|317046423|ref|YP_004114071.1| NusG antitermination factor [Pantoea sp. At-9b]
gi|316948040|gb|ADU67515.1| NusG antitermination factor [Pantoea sp. At-9b]
Length = 162
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 13/171 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQAVN---------CLSPMIALEKIVRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ TI T V F+ G P+ V IE + + P + +
Sbjct: 55 LFIEFDPEAIHTTTISSTRGVSHFVRFGTMPATVPYEVIEALQCDAPQILIDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG+ V +++G F I D E R + + + + + Q K
Sbjct: 112 VGDEVIITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRK 161
>gi|227888546|ref|ZP_04006351.1| transcriptional activator RfaH [Escherichia coli 83972]
gi|227834385|gb|EEJ44851.1| transcriptional activator RfaH [Escherichia coli 83972]
gi|307555988|gb|ADN48763.1| transcriptional activator RfaH [Escherichia coli ABU 83972]
Length = 162
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V S
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPSTP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|198242878|ref|YP_002217904.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197937394|gb|ACH74727.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 162
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I + V P +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E R + + + +
Sbjct: 112 --PGDSVIITEGAFEGLKAIFTEPDGET-RSILLLNLLNKEV 150
>gi|170744011|ref|YP_001772666.1| NusG antitermination factor [Methylobacterium sp. 4-46]
gi|168198285|gb|ACA20232.1| NusG antitermination factor [Methylobacterium sp. 4-46]
Length = 225
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 15/174 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
W + + + V + + GL E V V G +
Sbjct: 52 WLVARTRPRWAPRVVRDL----AALGLCAFEAR-----EEVERVGPDGARRRVAVPLLHR 102
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIMNQVEAAVQRPVS 119
V + + + P V+ L P+P+ + + + + V
Sbjct: 103 LVFLGLRDDADLARA-EAHPGVLRVLFREGRAVTIPAPILQAFADALAGRAGEGEDEAVE 161
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+V +G+ V V+ GP A+ G ++ VD + R V + +FGR T V+LA +V
Sbjct: 162 AVLLALGDAVRVTRGPLAALRGTIEAVDPARRRYRVALGLFGRATRVDLAAEEV 215
>gi|157144469|ref|YP_001451788.1| transcriptional activator RfaH [Citrobacter koseri ATCC BAA-895]
gi|157081674|gb|ABV11352.1| hypothetical protein CKO_00183 [Citrobacter koseri ATCC BAA-895]
Length = 162
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKMVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V P +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPATVPSNVIHQLSVYKPEGVVDPETPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E +R + + + +
Sbjct: 112 --PGDSVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKEV 150
>gi|26250608|ref|NP_756648.1| transcriptional activator RfaH [Escherichia coli CFT073]
gi|91213389|ref|YP_543375.1| transcriptional activator RfaH [Escherichia coli UTI89]
gi|110644186|ref|YP_671916.1| transcriptional activator RfaH [Escherichia coli 536]
gi|117626120|ref|YP_859443.1| transcriptional activator RfaH [Escherichia coli APEC O1]
gi|191173932|ref|ZP_03035451.1| transcriptional activator RfaH [Escherichia coli F11]
gi|215489181|ref|YP_002331612.1| transcriptional activator RfaH [Escherichia coli O127:H6 str.
E2348/69]
gi|218560923|ref|YP_002393836.1| transcriptional activator RfaH [Escherichia coli S88]
gi|218692134|ref|YP_002400346.1| transcriptional activator RfaH [Escherichia coli ED1a]
gi|237702875|ref|ZP_04533356.1| transcriptional activator RfaH [Escherichia sp. 3_2_53FAA]
gi|300939921|ref|ZP_07154551.1| transcriptional activator RfaH [Escherichia coli MS 21-1]
gi|300979538|ref|ZP_07174603.1| transcriptional activator RfaH [Escherichia coli MS 200-1]
gi|300985617|ref|ZP_07177504.1| transcriptional activator RfaH [Escherichia coli MS 45-1]
gi|301047251|ref|ZP_07194338.1| transcriptional activator RfaH [Escherichia coli MS 185-1]
gi|306815099|ref|ZP_07449252.1| transcriptional activator RfaH [Escherichia coli NC101]
gi|331649687|ref|ZP_08350769.1| transcriptional activator RfaH [Escherichia coli M605]
gi|331660205|ref|ZP_08361141.1| transcriptional activator RfaH [Escherichia coli TA206]
gi|9965392|gb|AAG10071.1|AF294318_1 transcriptional activator RfaH [Escherichia coli]
gi|26111039|gb|AAN83222.1|AE016770_22 Transcriptional activator rfaH [Escherichia coli CFT073]
gi|91074963|gb|ABE09844.1| transcriptional activator RfaH [Escherichia coli UTI89]
gi|110345778|gb|ABG72015.1| transcriptional activator RfaH [Escherichia coli 536]
gi|115515244|gb|ABJ03319.1| transcriptional activator RfaH [Escherichia coli APEC O1]
gi|190905799|gb|EDV65419.1| transcriptional activator RfaH [Escherichia coli F11]
gi|215267253|emb|CAS11702.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O127:H6 str. E2348/69]
gi|218367692|emb|CAR05481.1| DNA-binding transcriptional antiterminator [Escherichia coli S88]
gi|218429698|emb|CAR10658.2| DNA-binding transcriptional antiterminator [Escherichia coli ED1a]
gi|222035560|emb|CAP78305.1| Transcriptional activator rfaH [Escherichia coli LF82]
gi|226903046|gb|EEH89305.1| transcriptional activator RfaH [Escherichia sp. 3_2_53FAA]
gi|281180909|dbj|BAI57239.1| transcriptional activator [Escherichia coli SE15]
gi|294492287|gb|ADE91043.1| transcriptional activator RfaH [Escherichia coli IHE3034]
gi|300300841|gb|EFJ57226.1| transcriptional activator RfaH [Escherichia coli MS 185-1]
gi|300307979|gb|EFJ62499.1| transcriptional activator RfaH [Escherichia coli MS 200-1]
gi|300408001|gb|EFJ91539.1| transcriptional activator RfaH [Escherichia coli MS 45-1]
gi|300455231|gb|EFK18724.1| transcriptional activator RfaH [Escherichia coli MS 21-1]
gi|305851468|gb|EFM51922.1| transcriptional activator RfaH [Escherichia coli NC101]
gi|307628923|gb|ADN73227.1| transcriptional activator RfaH [Escherichia coli UM146]
gi|312948416|gb|ADR29243.1| transcriptional activator RfaH [Escherichia coli O83:H1 str. NRG
857C]
gi|315284781|gb|EFU44226.1| transcriptional activator RfaH [Escherichia coli MS 110-3]
gi|315293213|gb|EFU52565.1| transcriptional activator RfaH [Escherichia coli MS 153-1]
gi|315300809|gb|EFU60034.1| transcriptional activator RfaH [Escherichia coli MS 16-3]
gi|320197665|gb|EFW72277.1| Transcriptional activator RfaH [Escherichia coli WV_060327]
gi|323189730|gb|EFZ75009.1| transcriptional activator RfaH [Escherichia coli RN587/1]
gi|323949255|gb|EGB45145.1| transcriptional activator RfaH [Escherichia coli H252]
gi|323954070|gb|EGB49868.1| transcriptional activator RfaH [Escherichia coli H263]
gi|324007531|gb|EGB76750.1| transcriptional activator RfaH [Escherichia coli MS 57-2]
gi|324014652|gb|EGB83871.1| transcriptional activator RfaH [Escherichia coli MS 60-1]
gi|330908164|gb|EGH36683.1| transcriptional activator RfaH [Escherichia coli AA86]
gi|331041557|gb|EGI13705.1| transcriptional activator RfaH [Escherichia coli M605]
gi|331052773|gb|EGI24808.1| transcriptional activator RfaH [Escherichia coli TA206]
Length = 162
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V S
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPSTP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|16767247|ref|NP_462862.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56415831|ref|YP_152906.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62182445|ref|YP_218862.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161617101|ref|YP_001591065.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167553387|ref|ZP_02347136.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167993917|ref|ZP_02575010.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168233912|ref|ZP_02658970.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238430|ref|ZP_02663488.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168244668|ref|ZP_02669600.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168263131|ref|ZP_02685104.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168467606|ref|ZP_02701443.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168822651|ref|ZP_02834651.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194442676|ref|YP_002043206.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194451271|ref|YP_002047987.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471723|ref|ZP_03077707.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194736748|ref|YP_002116903.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249659|ref|YP_002148903.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197261907|ref|ZP_03161981.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197364761|ref|YP_002144398.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|200389120|ref|ZP_03215732.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204930337|ref|ZP_03221314.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205354464|ref|YP_002228265.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207859177|ref|YP_002245828.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224585792|ref|YP_002639591.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238912981|ref|ZP_04656818.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|6960227|gb|AAF33417.1| 88% identity to E. coli transcriptional activator RFAH) (SW:P26614)
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16422542|gb|AAL22821.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56130088|gb|AAV79594.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62130078|gb|AAX67781.1| transcriptional activator affecting biosynthesis of
lipopolysaccharide core, F pilin, and haemolysin
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161366465|gb|ABX70233.1| hypothetical protein SPAB_04934 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401339|gb|ACF61561.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194409575|gb|ACF69794.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458087|gb|EDX46926.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194712250|gb|ACF91471.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195629956|gb|EDX48616.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197096238|emb|CAR61835.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213362|gb|ACH50759.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197240162|gb|EDY22782.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197288714|gb|EDY28089.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|199606218|gb|EDZ04763.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204320741|gb|EDZ05943.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205274245|emb|CAR39264.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322157|gb|EDZ09996.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205328150|gb|EDZ14914.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205332101|gb|EDZ18865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205336504|gb|EDZ23268.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205340955|gb|EDZ27719.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348234|gb|EDZ34865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206710980|emb|CAR35348.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224470320|gb|ACN48150.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261249100|emb|CBG26961.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996261|gb|ACY91146.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160492|emb|CBW20022.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915096|dbj|BAJ39070.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321225494|gb|EFX50551.1| Transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322613053|gb|EFY10004.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617359|gb|EFY14259.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625649|gb|EFY22471.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627072|gb|EFY23865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631212|gb|EFY27975.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638245|gb|EFY34944.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642819|gb|EFY39406.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646939|gb|EFY43441.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322650327|gb|EFY46740.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656383|gb|EFY52677.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657608|gb|EFY53878.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322666019|gb|EFY62200.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666758|gb|EFY62935.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670999|gb|EFY67129.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322679294|gb|EFY75346.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681698|gb|EFY77725.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685975|gb|EFY81963.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716939|gb|EFZ08510.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323132325|gb|ADX19755.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323192078|gb|EFZ77312.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196467|gb|EFZ81617.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203781|gb|EFZ88802.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323205344|gb|EFZ90318.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323210713|gb|EFZ95589.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215881|gb|EGA00614.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221374|gb|EGA05792.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227608|gb|EGA11764.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231793|gb|EGA15904.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236208|gb|EGA20285.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239555|gb|EGA23603.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244349|gb|EGA28357.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249554|gb|EGA33466.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250354|gb|EGA34240.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256561|gb|EGA40292.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259741|gb|EGA43374.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265149|gb|EGA48647.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268422|gb|EGA51894.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326629597|gb|EGE35940.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 162
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I + V P +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E R + + + +
Sbjct: 112 --PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEV 150
>gi|320639325|gb|EFX08947.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
G5101]
Length = 162
Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|146313585|ref|YP_001178659.1| transcriptional activator RfaH [Enterobacter sp. 638]
gi|145320461|gb|ABP62608.1| transcriptional acivator RfaH [Enterobacter sp. 638]
Length = 163
Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + +++G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPVITLEKIQRGKRTMVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G P+ V + I ++ +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGAQPATVPSTVIHQ-LSVYKQPDDITDPDTP 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
F G+ V +++G F I D E +R + + + +
Sbjct: 112 FC-GDDVVITEGAFEGLQAIFSEPDGE-ARSMLLLNLLNKQV 151
>gi|300714828|ref|YP_003739631.1| Transcriptional acivator RfaH [Erwinia billingiae Eb661]
gi|299060664|emb|CAX57771.1| Transcriptional acivator RfaH [Erwinia billingiae Eb661]
Length = 162
Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQSVH---------CLSPMIALEKLVRGKRTQVDEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ + H TI T V F+ G P+ V I + Q + + V
Sbjct: 55 LFIEFDP--EAIHTTTISATRGVSHFVRFGSLPASVPHDVIMAL--QTDTPITMVDPDVP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+RV ++ G F I D E +R + + + + L Q K+
Sbjct: 111 -QPGDRVLITCGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQITRSLDNKQFHKL 162
>gi|15804432|ref|NP_290472.1| transcriptional activator RfaH [Escherichia coli O157:H7 EDL933]
gi|15834024|ref|NP_312797.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
Sakai]
gi|16131688|ref|NP_418284.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
K-12 substr. MG1655]
gi|82546193|ref|YP_410140.1| transcriptional activator RfaH [Shigella boydii Sb227]
gi|82778980|ref|YP_405329.1| transcriptional activator RfaH [Shigella dysenteriae Sd197]
gi|89110180|ref|AP_003960.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
K-12 substr. W3110]
gi|157157494|ref|YP_001465326.1| transcriptional activator RfaH [Escherichia coli E24377A]
gi|157163316|ref|YP_001460634.1| transcriptional activator RfaH [Escherichia coli HS]
gi|168750342|ref|ZP_02775364.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4113]
gi|168753743|ref|ZP_02778750.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4401]
gi|168763971|ref|ZP_02788978.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4501]
gi|168768127|ref|ZP_02793134.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4486]
gi|168775603|ref|ZP_02800610.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4196]
gi|168780745|ref|ZP_02805752.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4076]
gi|168786684|ref|ZP_02811691.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC869]
gi|168801090|ref|ZP_02826097.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC508]
gi|170022138|ref|YP_001727092.1| transcriptional activator RfaH [Escherichia coli ATCC 8739]
gi|170083320|ref|YP_001732640.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
K-12 substr. DH10B]
gi|187730813|ref|YP_001882542.1| transcriptional activator RfaH [Shigella boydii CDC 3083-94]
gi|188496080|ref|ZP_03003350.1| transcriptional activator RfaH [Escherichia coli 53638]
gi|191166059|ref|ZP_03027894.1| transcriptional activator RfaH [Escherichia coli B7A]
gi|193065712|ref|ZP_03046777.1| transcriptional activator RfaH [Escherichia coli E22]
gi|193067980|ref|ZP_03048945.1| transcriptional activator RfaH [Escherichia coli E110019]
gi|194429216|ref|ZP_03061744.1| transcriptional activator RfaH [Escherichia coli B171]
gi|194438631|ref|ZP_03070719.1| transcriptional activator RfaH [Escherichia coli 101-1]
gi|195938132|ref|ZP_03083514.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4024]
gi|208806896|ref|ZP_03249233.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4206]
gi|208814326|ref|ZP_03255655.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4045]
gi|208821153|ref|ZP_03261473.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4042]
gi|209396563|ref|YP_002273359.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4115]
gi|209921319|ref|YP_002295403.1| transcriptional activator RfaH [Escherichia coli SE11]
gi|217324983|ref|ZP_03441067.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
TW14588]
gi|218556406|ref|YP_002389320.1| transcriptional activator RfaH [Escherichia coli IAI1]
gi|218697561|ref|YP_002405228.1| transcriptional activator RfaH [Escherichia coli 55989]
gi|218701455|ref|YP_002409084.1| transcriptional activator RfaH [Escherichia coli IAI39]
gi|218707473|ref|YP_002414992.1| transcriptional activator RfaH [Escherichia coli UMN026]
gi|238902915|ref|YP_002928711.1| DNA-binding transcriptional antiterminator [Escherichia coli
BW2952]
gi|253775519|ref|YP_003038350.1| transcriptional activator RfaH [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163799|ref|YP_003046907.1| transcriptional activator RfaH [Escherichia coli B str. REL606]
gi|254795838|ref|YP_003080675.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
TW14359]
gi|256021414|ref|ZP_05435279.1| transcriptional activator RfaH [Shigella sp. D9]
gi|256026187|ref|ZP_05440052.1| transcriptional activator RfaH [Escherichia sp. 4_1_40B]
gi|260846384|ref|YP_003224162.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O103:H2 str. 12009]
gi|260857754|ref|YP_003231645.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O26:H11 str. 11368]
gi|260870564|ref|YP_003236966.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O111:H- str. 11128]
gi|261225616|ref|ZP_05939897.1| DNA-binding transcriptional antiterminator [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255662|ref|ZP_05948195.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O157:H7 str. FRIK966]
gi|291285257|ref|YP_003502075.1| transcriptional activator RfaH [Escherichia coli O55:H7 str.
CB9615]
gi|293407466|ref|ZP_06651386.1| rfaH [Escherichia coli FVEC1412]
gi|293417307|ref|ZP_06659932.1| transcriptional activator RfaH [Escherichia coli B185]
gi|293468158|ref|ZP_06664570.1| transcriptional activator RfaH [Escherichia coli B088]
gi|297516232|ref|ZP_06934618.1| transcriptional activator RfaH [Escherichia coli OP50]
gi|298383208|ref|ZP_06992802.1| transcriptional activator rfaH [Escherichia coli FVEC1302]
gi|300818686|ref|ZP_07098893.1| transcriptional activator RfaH [Escherichia coli MS 107-1]
gi|300823380|ref|ZP_07103511.1| transcriptional activator RfaH [Escherichia coli MS 119-7]
gi|300900604|ref|ZP_07118766.1| transcriptional activator RfaH [Escherichia coli MS 198-1]
gi|300904096|ref|ZP_07121975.1| transcriptional activator RfaH [Escherichia coli MS 84-1]
gi|300919846|ref|ZP_07136316.1| transcriptional activator RfaH [Escherichia coli MS 115-1]
gi|300923346|ref|ZP_07139392.1| transcriptional activator RfaH [Escherichia coli MS 182-1]
gi|300929975|ref|ZP_07145409.1| transcriptional activator RfaH [Escherichia coli MS 187-1]
gi|300950394|ref|ZP_07164318.1| transcriptional activator RfaH [Escherichia coli MS 116-1]
gi|300955152|ref|ZP_07167551.1| transcriptional activator RfaH [Escherichia coli MS 175-1]
gi|301025679|ref|ZP_07189196.1| transcriptional activator RfaH [Escherichia coli MS 69-1]
gi|301029060|ref|ZP_07192211.1| transcriptional activator RfaH [Escherichia coli MS 196-1]
gi|301303737|ref|ZP_07209858.1| transcriptional activator RfaH [Escherichia coli MS 124-1]
gi|301328390|ref|ZP_07221479.1| transcriptional activator RfaH [Escherichia coli MS 78-1]
gi|301646091|ref|ZP_07245993.1| transcriptional activator RfaH [Escherichia coli MS 146-1]
gi|307140539|ref|ZP_07499895.1| transcriptional activator RfaH [Escherichia coli H736]
gi|307313585|ref|ZP_07593205.1| NusG antitermination factor [Escherichia coli W]
gi|309796212|ref|ZP_07690622.1| transcriptional activator RfaH [Escherichia coli MS 145-7]
gi|312971870|ref|ZP_07786044.1| transcriptional activator RfaH [Escherichia coli 1827-70]
gi|331644573|ref|ZP_08345693.1| transcriptional activator RfaH [Escherichia coli H736]
gi|331655526|ref|ZP_08356519.1| transcriptional activator RfaH [Escherichia coli M718]
gi|331665492|ref|ZP_08366391.1| transcriptional activator RfaH [Escherichia coli TA143]
gi|331670687|ref|ZP_08371524.1| transcriptional activator RfaH [Escherichia coli TA271]
gi|331675305|ref|ZP_08376056.1| transcriptional activator RfaH [Escherichia coli TA280]
gi|331679952|ref|ZP_08380615.1| transcriptional activator RfaH [Escherichia coli H591]
gi|331685581|ref|ZP_08386165.1| transcriptional activator RfaH [Escherichia coli H299]
gi|84027859|sp|P0AFW1|RFAH_ECO57 RecName: Full=Transcriptional activator rfaH
gi|84027860|sp|P0AFW0|RFAH_ECOLI RecName: Full=Transcriptional activator rfaH
gi|146386655|pdb|2OUG|A Chain A, Crystal Structure Of The Rfah Transcription Factor At 2.1a
Resolution
gi|146386656|pdb|2OUG|B Chain B, Crystal Structure Of The Rfah Transcription Factor At 2.1a
Resolution
gi|146386657|pdb|2OUG|C Chain C, Crystal Structure Of The Rfah Transcription Factor At 2.1a
Resolution
gi|146386658|pdb|2OUG|D Chain D, Crystal Structure Of The Rfah Transcription Factor At 2.1a
Resolution
gi|12518720|gb|AAG59036.1|AE005615_4 transcriptional activator affecting biosynthesis of
lipopolysaccharide core, F pilin, and haemolysin
[Escherichia coli O157:H7 str. EDL933]
gi|41729|emb|CAA46147.1| transcriptional activator of haemolysin synthesis and secretion
[Escherichia coli]
gi|148241|gb|AAA67638.1| also called sfrB, hlyT [Escherichia coli str. K-12 substr. MG1655]
gi|1209302|gb|AAA91060.1| RfaH [Escherichia coli]
gi|1790276|gb|AAC76845.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
K-12 substr. MG1655]
gi|13364246|dbj|BAB38193.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
Sakai]
gi|81243128|gb|ABB63838.1| transcriptional activator affecting biosynthesis of
lipopolysaccharide core, F pilin, and haemolysin
[Shigella dysenteriae Sd197]
gi|81247604|gb|ABB68312.1| RfaH [Shigella boydii Sb227]
gi|85676211|dbj|BAE77461.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
K12 substr. W3110]
gi|157068996|gb|ABV08251.1| transcriptional activator RfaH [Escherichia coli HS]
gi|157079524|gb|ABV19232.1| transcriptional activator RfaH [Escherichia coli E24377A]
gi|169757066|gb|ACA79765.1| transcriptional acivator RfaH [Escherichia coli ATCC 8739]
gi|169891155|gb|ACB04862.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
K-12 substr. DH10B]
gi|187427805|gb|ACD07079.1| transcriptional activator RfaH [Shigella boydii CDC 3083-94]
gi|187768834|gb|EDU32678.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4196]
gi|188015407|gb|EDU53529.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4113]
gi|188491279|gb|EDU66382.1| transcriptional activator RfaH [Escherichia coli 53638]
gi|189001465|gb|EDU70451.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4076]
gi|189358848|gb|EDU77267.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4401]
gi|189362555|gb|EDU80974.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4486]
gi|189365970|gb|EDU84386.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4501]
gi|189373233|gb|EDU91649.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC869]
gi|189376688|gb|EDU95104.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC508]
gi|190903835|gb|EDV63549.1| transcriptional activator RfaH [Escherichia coli B7A]
gi|192926679|gb|EDV81308.1| transcriptional activator RfaH [Escherichia coli E22]
gi|192958600|gb|EDV89038.1| transcriptional activator RfaH [Escherichia coli E110019]
gi|194412728|gb|EDX29022.1| transcriptional activator RfaH [Escherichia coli B171]
gi|194422435|gb|EDX38434.1| transcriptional activator RfaH [Escherichia coli 101-1]
gi|208726697|gb|EDZ76298.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4206]
gi|208735603|gb|EDZ84290.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4045]
gi|208741276|gb|EDZ88958.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4042]
gi|209157963|gb|ACI35396.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4115]
gi|209752998|gb|ACI74806.1| putative oxidoreductase [Escherichia coli]
gi|209753000|gb|ACI74807.1| putative oxidoreductase [Escherichia coli]
gi|209753002|gb|ACI74808.1| putative oxidoreductase [Escherichia coli]
gi|209753004|gb|ACI74809.1| putative oxidoreductase [Escherichia coli]
gi|209753006|gb|ACI74810.1| putative oxidoreductase [Escherichia coli]
gi|209914578|dbj|BAG79652.1| transcriptional activator [Escherichia coli SE11]
gi|217321204|gb|EEC29628.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
TW14588]
gi|218354293|emb|CAV00992.1| DNA-binding transcriptional antiterminator [Escherichia coli 55989]
gi|218363175|emb|CAR00816.1| DNA-binding transcriptional antiterminator [Escherichia coli IAI1]
gi|218371441|emb|CAR19274.1| DNA-binding transcriptional antiterminator [Escherichia coli IAI39]
gi|218434570|emb|CAR15499.1| DNA-binding transcriptional antiterminator [Escherichia coli
UMN026]
gi|238860913|gb|ACR62911.1| DNA-binding transcriptional antiterminator [Escherichia coli
BW2952]
gi|242379385|emb|CAQ34199.1| RfaH transcriptional antiterminator [Escherichia coli BL21(DE3)]
gi|253326563|gb|ACT31165.1| transcriptional acivator RfaH [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975700|gb|ACT41371.1| transcriptional activator RfaH [Escherichia coli B str. REL606]
gi|253979856|gb|ACT45526.1| transcriptional activator RfaH [Escherichia coli BL21(DE3)]
gi|254595238|gb|ACT74599.1| DNA-binding transcriptional antiterminator [Escherichia coli
O157:H7 str. TW14359]
gi|257756403|dbj|BAI27905.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O26:H11 str. 11368]
gi|257761531|dbj|BAI33028.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O103:H2 str. 12009]
gi|257766920|dbj|BAI38415.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
O111:H- str. 11128]
gi|260451317|gb|ACX41739.1| transcriptional acivator RfaH [Escherichia coli DH1]
gi|290765130|gb|ADD59091.1| transcriptional activator RfaH [Escherichia coli O55:H7 str.
CB9615]
gi|291321536|gb|EFE60974.1| transcriptional activator RfaH [Escherichia coli B088]
gi|291425577|gb|EFE98615.1| rfaH [Escherichia coli FVEC1412]
gi|291431075|gb|EFF04070.1| transcriptional activator RfaH [Escherichia coli B185]
gi|298276444|gb|EFI17963.1| transcriptional activator rfaH [Escherichia coli FVEC1302]
gi|299877982|gb|EFI86193.1| transcriptional activator RfaH [Escherichia coli MS 196-1]
gi|300317923|gb|EFJ67707.1| transcriptional activator RfaH [Escherichia coli MS 175-1]
gi|300355904|gb|EFJ71774.1| transcriptional activator RfaH [Escherichia coli MS 198-1]
gi|300395881|gb|EFJ79419.1| transcriptional activator RfaH [Escherichia coli MS 69-1]
gi|300403932|gb|EFJ87470.1| transcriptional activator RfaH [Escherichia coli MS 84-1]
gi|300413105|gb|EFJ96415.1| transcriptional activator RfaH [Escherichia coli MS 115-1]
gi|300420374|gb|EFK03685.1| transcriptional activator RfaH [Escherichia coli MS 182-1]
gi|300450270|gb|EFK13890.1| transcriptional activator RfaH [Escherichia coli MS 116-1]
gi|300462113|gb|EFK25606.1| transcriptional activator RfaH [Escherichia coli MS 187-1]
gi|300524166|gb|EFK45235.1| transcriptional activator RfaH [Escherichia coli MS 119-7]
gi|300528652|gb|EFK49714.1| transcriptional activator RfaH [Escherichia coli MS 107-1]
gi|300841037|gb|EFK68797.1| transcriptional activator RfaH [Escherichia coli MS 124-1]
gi|300845189|gb|EFK72949.1| transcriptional activator RfaH [Escherichia coli MS 78-1]
gi|301075670|gb|EFK90476.1| transcriptional activator RfaH [Escherichia coli MS 146-1]
gi|306906566|gb|EFN37078.1| NusG antitermination factor [Escherichia coli W]
gi|308120094|gb|EFO57356.1| transcriptional activator RfaH [Escherichia coli MS 145-7]
gi|309704273|emb|CBJ03622.1| transcriptional activator [Escherichia coli ETEC H10407]
gi|310334247|gb|EFQ00452.1| transcriptional activator RfaH [Escherichia coli 1827-70]
gi|315063132|gb|ADT77459.1| DNA-binding transcriptional antiterminator [Escherichia coli W]
gi|315138416|dbj|BAJ45575.1| transcriptional activator RfaH [Escherichia coli DH1]
gi|315254206|gb|EFU34174.1| transcriptional activator RfaH [Escherichia coli MS 85-1]
gi|315618714|gb|EFU99299.1| transcriptional activator RfaH [Escherichia coli 3431]
gi|320186230|gb|EFW60969.1| Transcriptional activator RfaH [Shigella flexneri CDC 796-83]
gi|320191065|gb|EFW65715.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC1212]
gi|320198453|gb|EFW73054.1| Transcriptional activator RfaH [Escherichia coli EC4100B]
gi|320644710|gb|EFX13760.1| transcriptional activator RfaH [Escherichia coli O157:H- str.
493-89]
gi|320650035|gb|EFX18538.1| transcriptional activator RfaH [Escherichia coli O157:H- str. H
2687]
gi|320655382|gb|EFX23324.1| transcriptional activator RfaH [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661007|gb|EFX28450.1| transcriptional activator RfaH [Escherichia coli O55:H7 str. USDA
5905]
gi|320666131|gb|EFX33145.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
LSU-61]
gi|323155249|gb|EFZ41433.1| transcriptional activator RfaH [Escherichia coli EPECa14]
gi|323161095|gb|EFZ47013.1| transcriptional activator RfaH [Escherichia coli E128010]
gi|323173460|gb|EFZ59089.1| transcriptional activator RfaH [Escherichia coli LT-68]
gi|323177853|gb|EFZ63437.1| transcriptional activator RfaH [Escherichia coli 1180]
gi|323182612|gb|EFZ68016.1| transcriptional activator RfaH [Escherichia coli 1357]
gi|323380804|gb|ADX53072.1| transcriptional acivator RfaH [Escherichia coli KO11]
gi|323934143|gb|EGB30578.1| transcriptional activator RfaH [Escherichia coli E1520]
gi|323938976|gb|EGB35195.1| transcriptional activator RfaH [Escherichia coli E482]
gi|323943842|gb|EGB39936.1| transcriptional activator RfaH [Escherichia coli H120]
gi|323959111|gb|EGB54780.1| transcriptional activator RfaH [Escherichia coli H489]
gi|323964092|gb|EGB59582.1| transcriptional activator RfaH [Escherichia coli M863]
gi|323969303|gb|EGB64602.1| transcriptional activator RfaH [Escherichia coli TA007]
gi|324016241|gb|EGB85460.1| transcriptional activator RfaH [Escherichia coli MS 117-3]
gi|324115697|gb|EGC09632.1| transcriptional activator RfaH [Escherichia coli E1167]
gi|326344298|gb|EGD68058.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. 1125]
gi|326347874|gb|EGD71588.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. 1044]
gi|327250701|gb|EGE62407.1| transcriptional activator RfaH [Escherichia coli STEC_7v]
gi|331036245|gb|EGI08480.1| transcriptional activator RfaH [Escherichia coli H736]
gi|331046847|gb|EGI18931.1| transcriptional activator RfaH [Escherichia coli M718]
gi|331057390|gb|EGI29379.1| transcriptional activator RfaH [Escherichia coli TA143]
gi|331062160|gb|EGI34082.1| transcriptional activator RfaH [Escherichia coli TA271]
gi|331067591|gb|EGI38995.1| transcriptional activator RfaH [Escherichia coli TA280]
gi|331072499|gb|EGI43831.1| transcriptional activator RfaH [Escherichia coli H591]
gi|331077282|gb|EGI48496.1| transcriptional activator RfaH [Escherichia coli H299]
gi|332088527|gb|EGI93643.1| transcriptional activator RfaH [Shigella boydii 3594-74]
gi|332105002|gb|EGJ08348.1| transcriptional activator RfaH [Shigella sp. D9]
Length = 162
Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|317052839|ref|YP_004119605.1| NusG antitermination factor [Pantoea sp. At-9b]
gi|316953579|gb|ADU73049.1| NusG antitermination factor [Pantoea sp. At-9b]
Length = 170
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 18/165 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR-KVNSERRFFPG 63
WY+ Q EK+A + + G+ +P V ++ G + +E+ FP
Sbjct: 4 WYVAQTKYAQEKRAQQQL----QSQGVT-----CLLPVFSEVRLQNGGIRRIAEQPLFPN 54
Query: 64 YVLIKAVMTDKVYHT--IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ +V HT IK T V + G PS V DS I + E+A P+++
Sbjct: 55 YIFVRFDP--EVVHTTAIKATRGVSTLISFGGLPSVVPDSVITRLNQGWESA---PLTTD 109
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
G+RV + DG F + D R + + + R PV
Sbjct: 110 APAHGDRVVIRDGVFEGLEAVWYEPDG-MKRAMLLLTLMNRQVPV 153
>gi|293413282|ref|ZP_06655944.1| transcriptional activator RfaH [Escherichia coli B354]
gi|284923948|emb|CBG37047.1| transcriptional activator [Escherichia coli 042]
gi|291468230|gb|EFF10727.1| transcriptional activator RfaH [Escherichia coli B354]
Length = 162
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKMVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|320179812|gb|EFW54759.1| Transcriptional activator RfaH [Shigella boydii ATCC 9905]
Length = 162
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H I T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTIISATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|329898901|ref|ZP_08272499.1| Transcriptional activator RfaH [gamma proteobacterium IMCC3088]
gi|328920709|gb|EGG28181.1| Transcriptional activator RfaH [gamma proteobacterium IMCC3088]
Length = 168
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 11/166 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +VQ E + L + +P + +G+ FP Y
Sbjct: 3 WLVVQTKPKQED---------AAELNLSRQGYRVFLPKLQQRKRVRGKWQLVVSPLFPRY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFF 123
+ I ++ T + + G++ PV D +E + Q + + S
Sbjct: 54 LFIDVDYGTDDLAPVRSTVGIFNLVRFGQDIIPVPDEVVEFLQVQQDPTLGAKNESDWPH 113
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G++V + GPFA G+ + +++ R ++ + + GR + + +
Sbjct: 114 KKGDKVEILQGPFAGLAGVFD-MSKDEERAYLFIELLGRASRIVVE 158
>gi|223985913|ref|ZP_03635949.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM
12042]
gi|223962100|gb|EEF66576.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM
12042]
Length = 171
Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V E+K I GL+ + P +VV ++G E+ FPGY
Sbjct: 3 WYVLFVRGGMEEK----IRDFFLSQGLNAFI-----PKMKVVFRKQGISELVEKIMFPGY 53
Query: 65 VLIKAVMTDKVYHT-IKDTP----KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ I++ + IK+ ++ L + +P SE + + ++ +
Sbjct: 54 LFIESELEQAAMDEQIKELRMQKTGIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVLEH 113
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S G +V +++GP F + +D K R +E+ + G+ V ++ V+KI
Sbjct: 114 STGLIQGNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQKI 170
>gi|194434034|ref|ZP_03066304.1| transcriptional activator RfaH [Shigella dysenteriae 1012]
gi|194417692|gb|EDX33791.1| transcriptional activator RfaH [Shigella dysenteriae 1012]
gi|332084383|gb|EGI89581.1| transcriptional activator RfaH [Shigella boydii 5216-82]
Length = 162
Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|218550914|ref|YP_002384705.1| transcriptional activator RfaH [Escherichia fergusonii ATCC 35469]
gi|218358455|emb|CAQ91102.1| DNA-binding transcriptional antiterminator [Escherichia fergusonii
ATCC 35469]
gi|324111070|gb|EGC05057.1| transcriptional activator RfaH [Escherichia fergusonii B253]
gi|325499185|gb|EGC97044.1| transcriptional activator RfaH [Escherichia fergusonii ECD227]
Length = 162
Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 17/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + + P +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSIYKPEGIVDPGTPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V +++G F F I D E +R + + + + + + KI
Sbjct: 112 --PGDQVIITEGAFEGFQAIFSEPDGE-ARSMLLLNLINKEVKHSVKNTEFRKI 162
>gi|300021969|ref|YP_003754580.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
gi|299523790|gb|ADJ22259.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
Length = 175
Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +V ++ E A ++ + EI P R + S FPGY
Sbjct: 15 WVVVNAQAHREFVAASNLKKQ---------GYEIYAPVIRKTTRHARISRESLTPLFPGY 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + D + I T + + G PS + + ++ + + + V S E
Sbjct: 66 LFARWTAPDMRWRPILSTVGIRSIVRNGNEPSRLDGAIVDALKAREKDGVIVRAESQR-E 124
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+G+ V + GPF + + +K R+ V + + R T V + +Q+
Sbjct: 125 IGQIVRFARGPFDGIAAEIVELC-DKDRLVVLMTLLNRPTKVTVLEDQL 172
>gi|295095157|emb|CBK84247.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 163
Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + +++GR+ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGRRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I ++ +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGAHPARVPSSVIHQ-LSVYQQPEDITDPETP 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ G+ V +++G F I D E +R + + + +
Sbjct: 112 YA-GDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKEV 151
>gi|195941210|ref|ZP_03086592.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
EC4024]
Length = 163
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + +++GR+ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGRRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I ++ +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGAHPARVPSSVIHQ-LSVYQQPDDITDPETP 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ G+ V +++G F I D E +R + + + +
Sbjct: 112 YA-GDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKEV 151
>gi|251791465|ref|YP_003006186.1| transcriptional activator RfaH [Dickeya zeae Ech1591]
gi|247540086|gb|ACT08707.1| transcriptional acivator RfaH [Dickeya zeae Ech1591]
Length = 162
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 13/171 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + +V P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLER-------QDVV--CLSPMIALEKIVRGKRTEVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ V I+ + Q +
Sbjct: 55 LFVEFDPEHIHTTTISATRGVSHFVRFGSLPALVPQQVIDDL--QNHQCTPHIAPETP-Q 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G F+ I D E +R + + + + + Q K
Sbjct: 112 PGDHVTITEGVFSGLQAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRK 161
>gi|84516255|ref|ZP_01003615.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53]
gi|84509951|gb|EAQ06408.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53]
Length = 171
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 3/147 (2%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
L+ P+E R + V + FPGYV ++ + T +
Sbjct: 25 RNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAASGGVRAVNSTRGITKL 84
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
+ G+ P+ V I + ++ A + F+ G+ V + DGPFA F V+
Sbjct: 85 VTLGQGPAIVPAGLIAAL--RIRFAPPDITPAPQFDQGDWVRILDGPFAEFVAQVEAT-P 141
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
RV++ + + GR T V + +++
Sbjct: 142 AAERVYLLIDLMGRATRVAVDARSLKR 168
>gi|116625224|ref|YP_827380.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116228386|gb|ABJ87095.1| NusG antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 193
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ + V +L L+H E P + R+ + + + FPG
Sbjct: 18 QWFALSVTPK---------LTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPG 68
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + + ++ + TP V G +G G P+PV D EI + ++ + S+ +
Sbjct: 69 YVFARIDVRFRLPVLV--TPGVRGIVGYGRQPAPVDDGEIFALRRVMQ-SQLPAKSAPYL 125
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+RV + +GP + G++ RV V+V + + V++ V +
Sbjct: 126 RTGDRVQLVEGPLSGLTGLLIQQKGAN-RVLVQVTLINQALAVDVESAWVRSL 177
>gi|227114329|ref|ZP_03827985.1| transcriptional activator RfaH [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 162
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQDVT---------CVSPMITLDKIVRGKRTEVCEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ + I+ + + + P + +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPVQGIIDP---LTPQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V ++DG F+ I D E +R + + + +
Sbjct: 112 PGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQV 150
>gi|170769857|ref|ZP_02904310.1| transcriptional activator RfaH [Escherichia albertii TW07627]
gi|170121295|gb|EDS90226.1| transcriptional activator RfaH [Escherichia albertii TW07627]
Length = 162
Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + + S
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGPSPAIVPSAVIHQL--SIYKPEDIVDPSTP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|326202988|ref|ZP_08192855.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782]
gi|325987065|gb|EGD47894.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782]
Length = 176
Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 11/181 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WYI+ V S E++ + + + + P + G +
Sbjct: 1 MGMYWYILFVKSGREQRVQQYMNKIADNETANPFI-----PLHEFLIKISGVVKRELKPL 55
Query: 61 FPGYVLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
FPGYV +++VM + I + ++ L + V +SE + ++ +
Sbjct: 56 FPGYVFVESVMPGDEFLKKLNSRIHSSSDIVKVLKYSDTEIEVRESE-KQMLLNLCNKRH 114
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
SS G+R+ V++GP I++ ++ K + +E+ G V +A VEK
Sbjct: 115 CIESSRGIIRGDRIYVTNGPLKGRESIIRKINRHKKQALIEMDFMGDKRIVNVALEIVEK 174
Query: 176 I 176
+
Sbjct: 175 V 175
>gi|323974428|gb|EGB69556.1| transcriptional activator RfaH [Escherichia coli TW10509]
Length = 162
Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKNIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|308188887|ref|YP_003933018.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
gi|308059397|gb|ADO11569.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
Length = 162
Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQEVH---------CLSPMIALEKIVRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ TI T V F+ G P+ V + IE + V + P + +
Sbjct: 55 LFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPSAVIEALETDVPQILIDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V +++G F I D E R + + + + + Q KI
Sbjct: 112 SGDEVVITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRKI 162
>gi|238755200|ref|ZP_04616545.1| Transcriptional activator rfaH [Yersinia ruckeri ATCC 29473]
gi|238706541|gb|EEP98913.1| Transcriptional activator rfaH [Yersinia ruckeri ATCC 29473]
Length = 162
Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI--TIPSERVVSVRKGRKVNSERRFFP 62
WY++ +A E + + ++ P+ + + +G++ S+ FP
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQ-----------QVVSFTPTAMMERIVRGKRQTSDVHLFP 52
Query: 63 GYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ +K + H TI T V F+ G P+ V+++ I +++ + + P
Sbjct: 53 NYLFVKFDP--ECIHTTTISATRGVSHFVRFGAGPTIVSENIINELISCSQKVIIDPAVP 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V G+ V + +G FA I D E +R + + I + L+ +Q +KI
Sbjct: 111 V---PGDIVRIKEGVFAGLEAIYNEPDGE-ARSMLLLNILNKPINQSLSNSQFDKI 162
>gi|170682425|ref|YP_001746174.1| transcriptional activator RfaH [Escherichia coli SMS-3-5]
gi|170520143|gb|ACB18321.1| transcriptional activator RfaH [Escherichia coli SMS-3-5]
Length = 162
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMISLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|311281482|ref|YP_003943713.1| transcriptional acivator RfaH [Enterobacter cloacae SCF1]
gi|308750677|gb|ADO50429.1| transcriptional acivator RfaH [Enterobacter cloacae SCF1]
Length = 162
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMIALEKIIRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + + P +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPALVPSTVIHQLSIYKPEGIIDPQT--- 109
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEE 149
G+ V +++G F I D E
Sbjct: 110 PHPGDSVVITEGAFEGLKAIFTEPDGE 136
>gi|284041134|ref|YP_003391064.1| NusG antitermination factor [Spirosoma linguale DSM 74]
gi|283820427|gb|ADB42265.1| NusG antitermination factor [Spirosoma linguale DSM 74]
Length = 160
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 13/164 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ S EK E + + E+ P + R E F Y
Sbjct: 3 WFVLYTKSRNEKIVAEKLRAK---------DIEVYCPMIKRSRQWSDRVKVVEEPLFRSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+K + ++ H + P ++ +L P+ V D+EI+ I + + +
Sbjct: 54 CFVK--LDERRRHEVFSVPGLVRYLFWEGKPAIVRDAEIDSIKSMLAEVDHDLIHIKPLH 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
G ++ + G F G V V ++ V V + V V+L
Sbjct: 112 PGTQLTIKSGSFRDSIGTV--VRQDGRIVTVVLESLQMVLKVDL 153
>gi|149910552|ref|ZP_01899191.1| putative transcriptional activator RfaH [Moritella sp. PE36]
gi|149806395|gb|EDM66368.1| putative transcriptional activator RfaH [Moritella sp. PE36]
Length = 174
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 10/172 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ E +A+ ++ G++ P+ V + + + E FP
Sbjct: 6 KDWYLLYCKGKEEPRALINL----KNQGIES-----FYPTMTVEKKLRNKLICQEIAIFP 56
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + +++I+ T VI F+ G N + V + + + +
Sbjct: 57 NYLFVAIDKNTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTV 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F GE V + DG F I + D R + + + T + +A +++
Sbjct: 117 FSEGETVIIQDGAFKGIEAIYQCKDG-LERSMLLINLINHSTTMSVANGEIK 167
>gi|24115136|ref|NP_709646.1| transcriptional activator RfaH [Shigella flexneri 2a str. 301]
gi|30064863|ref|NP_839034.1| transcriptional activator RfaH [Shigella flexneri 2a str. 2457T]
gi|110807468|ref|YP_690988.1| transcriptional activator RfaH [Shigella flexneri 5 str. 8401]
gi|24054408|gb|AAN45353.1| transcriptional activator [Shigella flexneri 2a str. 301]
gi|30043123|gb|AAP18845.1| transcriptional activator [Shigella flexneri 2a str. 2457T]
gi|110617016|gb|ABF05683.1| transcriptional activator [Shigella flexneri 5 str. 8401]
gi|281603235|gb|ADA76219.1| Transcriptional activator rfaH [Shigella flexneri 2002017]
gi|313647116|gb|EFS11571.1| transcriptional activator RfaH [Shigella flexneri 2a str. 2457T]
Length = 162
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + + P
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAPPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
G++V +++G F F I D E +R + + + +
Sbjct: 112 --PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|16762157|ref|NP_457774.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143646|ref|NP_806988.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213022004|ref|ZP_03336451.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213162212|ref|ZP_03347922.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213417412|ref|ZP_03350554.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213427336|ref|ZP_03360086.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213583371|ref|ZP_03365197.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213616391|ref|ZP_03372217.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646466|ref|ZP_03376519.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213854780|ref|ZP_03383020.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289803898|ref|ZP_06534527.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289828717|ref|ZP_06546512.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25512544|pir||AE0915 transcription activator STY3582 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16504460|emb|CAD07915.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139281|gb|AAO70848.1| transcriptional activator [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 162
Score = 84.0 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTFVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V S I + V P +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPY- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E R + + + +
Sbjct: 112 --PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEV 150
>gi|295132413|ref|YP_003583089.1| NusG antitermination factor [Zunongwangia profunda SM-A87]
gi|294980428|gb|ADF50893.1| NusG antitermination factor [Zunongwangia profunda SM-A87]
Length = 164
Score = 84.0 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 58/151 (38%), Gaps = 11/151 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ E K + + + E+ P + + RK F Y
Sbjct: 3 WYVIYTKPKSEIKTAQRLEK---------IGVEVFCPVKNEIRQWSDRKKKFTVPLFTSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ D+ + + P V +L P+ V D+EI+ I V + + +
Sbjct: 54 LFVRLEEKDRA--IVFEVPGVNNYLFWLGQPAIVRDNEIDIIKKWVNDDAVEDIQLMHLK 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G+R+ + G F +V+ + + + ++ +
Sbjct: 112 AGDRLIIKKGAFKDREAVVQKIGKRRCKLVL 142
>gi|220928294|ref|YP_002505203.1| NusG antitermination factor [Clostridium cellulolyticum H10]
gi|219998622|gb|ACL75223.1| NusG antitermination factor [Clostridium cellulolyticum H10]
Length = 173
Score = 84.0 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V + E+ + + R LD + +P + + G + FPGY
Sbjct: 3 WYVLFVRTGREENVKKLLSKR-----LDKDLFLPFVPLNERIFKKAGTVNKNMEILFPGY 57
Query: 65 VLIKAVMTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V I++ + + +K +I + + V +SE I+ + S
Sbjct: 58 VFIESKVASQEFVKMTNELMKSLQDIIRLVRYSDIEIAVRESE-RIILQSLYNNNNCIES 116
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S G+++ + DGP IV++++ K +E+ G + V ++ V+K+
Sbjct: 117 SSGIIKGDKIYIIDGPLRGRESIVRHINRHKREAKIEIEFMGNIRLVSVSLEIVQKL 173
>gi|304398184|ref|ZP_07380059.1| NusG antitermination factor [Pantoea sp. aB]
gi|304354470|gb|EFM18842.1| NusG antitermination factor [Pantoea sp. aB]
Length = 162
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQEVH---------CLSPMIALEKIVRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ TI T V F+ G P+ V + IE + V + P + +
Sbjct: 55 LFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPSAVIEALETDVPQILLDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V +++G F I D E R + + + + + Q K+
Sbjct: 112 SGDEVVITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRKL 162
>gi|296105280|ref|YP_003615426.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059739|gb|ADF64477.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 163
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + +++G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I ++ +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGAHPATVPSTVIHQ-LSVYQQPEDITDPETP 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ G+ V +++G F I D E +R + + + +
Sbjct: 112 YA-GDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKQV 151
>gi|253690409|ref|YP_003019599.1| transcriptional acivator RfaH [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756987|gb|ACT15063.1| transcriptional acivator RfaH [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 162
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLER-------QDV--TCVSPMITLDKIVRGKRTEVCEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ + I+ + + + P + +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPLQVITDP---LTPQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V ++DG F+ I D E +R + + + +
Sbjct: 112 PGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQV 150
>gi|255533773|ref|YP_003094145.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366]
gi|255346757|gb|ACU06083.1| NGN domain protein [Pedobacter heparinus DSM 2366]
Length = 176
Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 11/151 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY V S EKKA +++ G++ + P +R + RK E
Sbjct: 11 KKWYPVYTQSRAEKKAYQALL----SKGIEAYL-----PLQRQLRQWSDRKKWVEEPLIK 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + + T + F+ + + D +IE + + + + ++
Sbjct: 62 SYLFVHIARQQQT--EVLMTTGISRFIYFSGKIAAMPDRQIEELKLLLASPYELEITEER 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
GE++ + GP G + +K +
Sbjct: 120 LLPGEKIEIKAGPLKGIRGEIIEYRSQKQLL 150
>gi|292486707|ref|YP_003529577.1| transcriptional activator RfaH [Erwinia amylovora CFBP1430]
gi|292897941|ref|YP_003537310.1| transcriptional activator [Erwinia amylovora ATCC 49946]
gi|291197789|emb|CBJ44884.1| transcriptional activator [Erwinia amylovora ATCC 49946]
gi|291552124|emb|CBA19161.1| Transcriptional activator RfaH [Erwinia amylovora CFBP1430]
gi|312170771|emb|CBX79033.1| Transcriptional activator RfaH [Erwinia amylovora ATCC BAA-2158]
Length = 166
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G+ FP Y
Sbjct: 4 WYLLYCKRGQLLRAQEHLERQAVH---------CLSPMVALEKMVRGKPTQVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ ++ H TI T V F+ G P+ V I + QV + R +
Sbjct: 55 LFVEFDP--ELIHTTTISATRGVSHFVRFGNQPATVPQGVINAL--QVGPGLPRDGGQLP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E +R + + + +
Sbjct: 111 L-PGDTVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150
>gi|259906910|ref|YP_002647266.1| transcriptional activator RfaH [Erwinia pyrifoliae Ep1/96]
gi|224962532|emb|CAX53987.1| transcriptional activator [Erwinia pyrifoliae Ep1/96]
gi|283476703|emb|CAY72532.1| Transcriptional activator RfaH [Erwinia pyrifoliae DSM 12163]
gi|310766158|gb|ADP11108.1| transcriptional activator RfaH [Erwinia sp. Ejp617]
Length = 166
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G+ FP Y
Sbjct: 4 WYLLYCKRGQLLRAQEHLERQAVH---------CLSPMVALEKIVRGKPTQVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ V I + QV A+ + +
Sbjct: 55 LFVEFDPESIHTTTISATRGVSHFVRFGNQPATVPQGVINAL--QVGPALPLDDGELP-Q 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G+ V +++G F I D E +R + + + +
Sbjct: 112 PGDTVMITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150
>gi|108761995|ref|YP_632130.1| NusG-like protein [Myxococcus xanthus DK 1622]
gi|4164406|emb|CAA09920.1| NusG-like protein [Myxococcus xanthus]
gi|108465875|gb|ABF91060.1| NusG-like protein [Myxococcus xanthus DK 1622]
Length = 168
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + V N EK A +G G + + T P K V ++ FPGY
Sbjct: 11 WVALLVRVNHEKVAAAQLGK----HGYEFFLPTYTPP--------KSSGVKAKLPLFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + + I P VI LG P V E+E I ++ V +
Sbjct: 59 LFCRYQPLNP--YRIVRAPGVIRLLGGDAGPEAVPAQELEAIRRVADSGVSSN-PCDYLR 115
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+RV + +GP G + + + R V V + R VE++ Q+E I
Sbjct: 116 VGQRVRIIEGPLTGLEGSLV-TSKSQLRFIVSVGLLQRSVSVEVSAEQLEPI 166
>gi|167957244|ref|ZP_02544318.1| transcription antitermination factor [candidate division TM7
single-cell isolate TM7c]
Length = 75
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 104 EHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ I ++ V+ P + FE GE V V DGPF F+G + +D K ++ V V +FGR
Sbjct: 5 KKIKKRM--GVEEPKHQIDFEEGEVVSVIDGPFKGFDGTISEIDTVKGKIKVMVSMFGRD 62
Query: 164 TPVELAYNQVEKI 176
TPVEL QV+KI
Sbjct: 63 TPVELDALQVKKI 75
>gi|225440570|ref|XP_002276763.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297740266|emb|CBI30448.3| unnamed protein product [Vitis vinifera]
Length = 339
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 71/241 (29%)
Query: 1 MTPRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSE 57
+ P+W++V+V S E E + L+R + ++ +PS +V ++ G
Sbjct: 97 LGPQWWVVRVSRVSGQES--AERLARSLAR-NFPDIDFKVYVPSVQVKRKLKNGSISVKP 153
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQ 109
+ FPG V ++ V+ + + I++ + GF+G+ P PV+ +IE I Q
Sbjct: 154 KPLFPGCVFLRCVLNKETHDFIRECDGIGGFVGSKVGNTKRQINKPRPVSVDDIEAIFKQ 213
Query: 110 VEAAVQRP-------------------------------VSSVFFEVGERVCVSDGPFAS 138
+ ++ +S V + R + P A
Sbjct: 214 SKEEQEKADKAFEEEQQKEETINPEKLIIYPHLDSKDVTISVVDSKPKRRSRKASKPIAD 273
Query: 139 -------------------FNGIVKNV-------DEEKSRVHVEVVIFGRVTPVELAYNQ 172
+G D + + V +FG+ T V+L N+
Sbjct: 274 GASTAKHDKLLKPGSTVRVVSGTFTEFSGSLKKLDRKNGKATVGFTLFGKETLVDLDVNE 333
Query: 173 V 173
+
Sbjct: 334 I 334
>gi|261346527|ref|ZP_05974171.1| transcriptional activator RfaH [Providencia rustigianii DSM 4541]
gi|282565231|gb|EFB70766.1| transcriptional activator RfaH [Providencia rustigianii DSM 4541]
Length = 164
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ +A+E + + P + V +G++V FP
Sbjct: 3 KWYLLYCKRGQLDRAIEHLTRQYVT---------CMTPMTEMEKVVRGKRVIVTEALFPN 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K T++ T V F+ G+ P V + EI ++ Q +
Sbjct: 54 YLFVKFDHEKIHTTTVQSTRGVSHFIRFGKLPVEVPE-EIMELLQQAPIGHSKAPD--LP 110
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V ++DG FA I D E SR + + I + Q +K+
Sbjct: 111 AHGDSVIITDGIFAGVKAIFDEPDGE-SRSILLLNILNTNVVKVIDNTQFKKL 162
>gi|325103553|ref|YP_004273207.1| NGN domain-containing protein [Pedobacter saltans DSM 12145]
gi|324972401|gb|ADY51385.1| NGN domain-containing protein [Pedobacter saltans DSM 12145]
Length = 180
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
++ +W+++ + EKK + + G+D P ++V S R E
Sbjct: 17 LSKQWFVIYTRTRWEKKVDTLLKQK----GIDSY-----CPLKKVRSKWADRIKTVELPL 67
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
F YV + +++ ++ T VI F+ P+ V + EIE I + + + VSS
Sbjct: 68 FTSYVFVNINYKEEL--KVRQTHGVINFIYYMGKPAVVRNQEIEEIQDILVKNREIEVSS 125
Query: 121 V-FFEVGERVCVSDGPFASFNGIVKNV 146
+ +G+RV + +G + G + V
Sbjct: 126 IRDLNIGDRVLIKNGALFNQEGNIVQV 152
>gi|121606024|ref|YP_983353.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
gi|120594993|gb|ABM38432.1| transcription antitermination protein nusG [Polaromonas
naphthalenivorans CJ2]
Length = 182
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 12/171 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ E ++ L + +P + + FP Y
Sbjct: 21 WYLTYARPRLE---------TVALQNLQQQGFDAYLPLYKSLKKTDAGIKAIFVPMFPRY 71
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-FF 123
V ++ + ++ T V + G + + ++ I + V+ +
Sbjct: 72 VFVRPSHPAQSIAPVRSTRGVAQLVQFGNELATIRADALDAIRQFEQQRNAADVAELSSL 131
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G V + + G+VK+V RV V + GR V + ++Q++
Sbjct: 132 RPGHAVRFHNPALSGLEGLVKSVSS--LRVTVLLEFMGREQLVSVEHHQLK 180
>gi|291615750|ref|YP_003518492.1| RfaH [Pantoea ananatis LMG 20103]
gi|291150780|gb|ADD75364.1| RfaH [Pantoea ananatis LMG 20103]
gi|327396015|dbj|BAK13437.1| transcriptional activator RfaH [Pantoea ananatis AJ13355]
Length = 182
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 17/173 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + + P + + +G++ FP Y
Sbjct: 24 WYLLYCKRGQLLRAKEHLERQ---------EVKCLSPMIAMEKIVRGKRTTVSEPLFPNY 74
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ + H TI T V F+ G P+ V I+ + V + P +
Sbjct: 75 LFIEFDP--EAIHTTTISSTRGVSHFVRFGTTPATVPALVIDALQTDVPQTLLDPET--- 129
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ V +++G F I D E +R + + + + + Q K
Sbjct: 130 PQNGDEVIITEGTFEGLRAIFSEPDGE-ARSILLLNLLNKQVVRSVDNRQFRK 181
>gi|308069775|ref|YP_003871380.1| hypothetical protein PPE_03019 [Paenibacillus polymyxa E681]
gi|305859054|gb|ADM70842.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 173
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+ V + E++ + I LD V + IP + + G FP Y
Sbjct: 3 WYVFFVRTGREEQVKQLI-----NEWLDSEVYKPFIPLQERLFKVAGIVKKEWAPLFPSY 57
Query: 65 VLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V I++ + D I + +I L + + + DSE + ++ + S
Sbjct: 58 VFIESNLPDLQFVTSTNSMICTSSDIIRLLRYSKYEASMRDSE-KQMLESLCNDSYCIES 116
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
S G+ + + DGP IVK +D K + +++ G + V +A + K+
Sbjct: 117 STGIIEGDNIRILDGPLKGRGSIVKKIDRHKRQAVIQLEFMGDIRLVRVALEIISKV 173
>gi|320176774|gb|EFW51808.1| Transcriptional activator RfaH [Shigella dysenteriae CDC 74-1112]
Length = 162
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVCGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|50119164|ref|YP_048331.1| transcriptional activator RfaH [Pectobacterium atrosepticum
SCRI1043]
gi|49609690|emb|CAG73123.1| transcriptional activator [Pectobacterium atrosepticum SCRI1043]
Length = 162
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 15/161 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQEVT---------CVSPMIALDKIVRGKRTEVCEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ ++ TI T V F+ G P+ + I+ + + ++ +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPMQVIIDPLTP---- 110
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ G+ V ++DG F+ I D E +R + + + +
Sbjct: 111 QSGDSVVITDGIFSGLQAIYSEPDGE-ARSMLLLNMLNKQV 150
>gi|206890959|ref|YP_002248310.1| transcription termination factor NusG domain protein
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742897|gb|ACI21954.1| transcription termination factor NusG domain protein
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 169
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + V S E K + RL+++G++ + P+ + K RK + FPGY
Sbjct: 8 WYCIYVKSRHEFKVFD----RLTKAGIEAFL-----PAVERLRRWKDRKKLIKFPLFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + ++ + TP V+ F+ T E + + + + +
Sbjct: 59 LFVCIEKSYELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAIENGREIDPYPYLK 118
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+RV + GP A GI+K E++ + + I R V++ ++VE
Sbjct: 119 EGQRVKIKSGPLAGATGILKK-KEKQHFFIISIHILQRAVSVKIDASEVE 167
>gi|238899141|ref|YP_002924823.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466901|gb|ACQ68675.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 162
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 17/175 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ +A E + + P V +GR++ E FP
Sbjct: 2 KSWYLLYCKRGQVFRAQEHLERQKVSF---------LTPLVTVEKCLRGRRIQVEEPLFP 52
Query: 63 GYVLIKAVMTDKVYHT--IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ I ++ HT IK T V F+ G + V D + I +
Sbjct: 53 NYLFIHFDP--EMIHTTCIKATRGVRDFVRFGNQLAVVPDIVVTQIQQRTFDKSVDFRIP 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V ++DGPF I D E R + + + + +Q +K
Sbjct: 111 T---PGDLVSITDGPFVGLQAIYSQPDGE-MRSILLMNLLHQQVSKSFDNHQFQK 161
>gi|218901299|ref|YP_002449133.1| transcription antitermination protein NusG [Bacillus cereus AH820]
gi|229077392|ref|ZP_04210051.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-2]
gi|254724238|ref|ZP_05186023.1| transcription antitermination protein NusG [Bacillus anthracis str.
A1055]
gi|218536551|gb|ACK88949.1| transcription antitermination protein NusG [Bacillus cereus AH820]
gi|228705917|gb|EEL58244.1| Transcription antitermination protein nusG [Bacillus cereus
Rock4-2]
Length = 68
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL +
Sbjct: 3 HMGMDNEVVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDF 62
Query: 171 NQVEKI 176
+Q+EK+
Sbjct: 63 HQIEKL 68
>gi|47168441|pdb|1NZ9|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
C-Terminal (Ngc) Domain From Thermus Thermophilus
Length = 58
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++QV K
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57
>gi|300713325|ref|YP_003739364.1| transcriptional activator [Erwinia billingiae Eb661]
gi|299060396|emb|CAX53646.1| Transcriptional activator [Erwinia billingiae Eb661]
Length = 184
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ EK+A +++ G++ + IT+ V R G SE FP Y
Sbjct: 16 WYVLITKYAQEKRAQDNL----INQGVNCWLPRITV---HSVDARGGGG-GSEVLAFPRY 67
Query: 65 VLIKAVMTDKVYHT--IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ HT IK T + G + P+ + +E+ + ++EA S
Sbjct: 68 LFAHFD--AEIIHTTTIKATRGISGIVSFNNTPAIMDGAELAALRMRMEAGAALAGRSPD 125
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
E GE V + +G F I D K R + + +FGR+T ++
Sbjct: 126 PEHGETVTIENGAFDGLEAIWHQPDGAK-RAILLINLFGRLTEAKI 170
>gi|77361554|ref|YP_341129.1| transcriptional activator RfaH [Pseudoalteromonas haloplanktis
TAC125]
gi|76876465|emb|CAI87687.1| putative Transcriptional activator RfaH [Pseudoalteromonas
haloplanktis TAC125]
Length = 161
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 14/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V E++A ++ G+ P + KGR+ + FPGY
Sbjct: 4 WYLVVCKPRQEERAQVNL----KNQGIASFF-----PKLTTEKLVKGRRTVKQSALFPGY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + + + +K+T V GF+ G V I + + + + V
Sbjct: 55 VFVCLEAENGNFFAVKNTRGVSGFVTYGAAYQRVPVELINQLKAERSHSHESQVPKN--- 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V++ F + + I K D + R + + + + + ++ + KI
Sbjct: 112 -GDLVSVNNESFKNIDAIYKEPDGD-MRSILFINLLNKQIEISVSNQAISKI 161
>gi|256422413|ref|YP_003123066.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256037321|gb|ACU60865.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 174
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 14/166 (8%)
Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
M+ WY++ E + + + +I +P V R E
Sbjct: 1 MSKFNVGWYLLYTRPRQEARVAK---------EMADKNIQIYLPYTTVTRRWTDRIKVLE 51
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
FP YV + + Y+ + ++ G + V+D+ ++ + +A
Sbjct: 52 VPLFPSYVFVHLTNMHEFYYG-SNLESACSYVRFGNEVARVSDAAVDAVRTIAKAGNNLE 110
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
VSS F G+++ + +GP N V K ++ V V + R
Sbjct: 111 VSSERFTPGQQMMIKEGPLCGLNCEVIQYKG-KDKILVRVHMLQRS 155
>gi|238784377|ref|ZP_04628387.1| Transcriptional activator rfaH [Yersinia bercovieri ATCC 43970]
gi|238714669|gb|EEQ06671.1| Transcriptional activator rfaH [Yersinia bercovieri ATCC 43970]
Length = 162
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G++ FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQAVN---------CWTPLVIIEKIVRGKRTEVTEPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + D TI T V F+ G P+ + D I + + + P +
Sbjct: 53 NYLFVAFDAEDIHTTTISATRGVSHFVRFGAQPAVIPDIVITEMQSHTTDKIIAPEVPL- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G FA I D E +R + + + L Q EK
Sbjct: 112 --PGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVIQSLENRQFEK 161
>gi|92117920|ref|YP_577649.1| NusG antitermination factor [Nitrobacter hamburgensis X14]
gi|91800814|gb|ABE63189.1| transcription antitermination protein nusG [Nitrobacter
hamburgensis X14]
Length = 196
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 32/199 (16%)
Query: 1 MTPR--WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT--IPSERVVSVRKGRKVNS 56
MT + WY++Q E KA + R G D + +P+ R KGRK+
Sbjct: 1 MTGKSIWYVLQTRPAHEDKAARGLVAR----GFDPYAPVVYRRVPTGR--RDDKGRKLTR 54
Query: 57 E--RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAA 113
E R FPGY+ ++ D+ + ++ P + G+L P V D ++ I
Sbjct: 55 EIARPMFPGYIFVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEE 114
Query: 114 ------------------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+R F+ G+ V V G + + V D + RV +
Sbjct: 115 FGRYLDEEERARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVL 173
Query: 156 EVVIFGRVTPVELAYNQVE 174
IFGR T + +E
Sbjct: 174 LFHIFGRETKIHADQADLE 192
>gi|311747951|ref|ZP_07721736.1| NusG antitermination factor [Algoriphagus sp. PR1]
gi|126574924|gb|EAZ79282.1| NusG antitermination factor [Algoriphagus sp. PR1]
Length = 170
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 11/142 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+++ S EKK + + E+ +P + RK E+ F G
Sbjct: 5 KWFVMYTASRSEKKVAKRLRENGK---------EVYLPIIEEIRQWSDRKKKVEKPLFNG 55
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +K +++ ++ P + F+ + V D E+E I + V
Sbjct: 56 YVFVKTTRN-QLWECLQ-VPGAVKFVHFSGQHATVRDEELETIERIISTGVAVESDGSVI 113
Query: 124 EVGERVCVSDGPFASFNGIVKN 145
E GE+V V G G V
Sbjct: 114 EAGEKVEVIGGALQHMTGEVIE 135
>gi|294660581|ref|NP_853429.2| transcription termination factor NusG [Mycoplasma gallisepticum
str. R(low)]
gi|7109682|gb|AAF36753.1| transcription antitermination factor NusG [Mycoplasma
gallisepticum]
gi|284812244|gb|AAP56997.2| transcription termination factor NusG [Mycoplasma gallisepticum
str. R(low)]
gi|284930926|gb|ADC30865.1| transcription termination factor NusG [Mycoplasma gallisepticum
str. R(high)]
gi|284931682|gb|ADC31620.1| transcription termination factor NusG [Mycoplasma gallisepticum
str. F]
Length = 267
Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 92/265 (34%)
Query: 1 MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS--------- 47
M+ + WYI + E ++++ ++ + + + + R V
Sbjct: 1 MSKKSTAQWYIATTTNGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNNP 60
Query: 48 ------------------VRKG---RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVI 86
V G + ++ +PGY+ IK M + + +++T +
Sbjct: 61 THNIPATMRNSTYIKWVTVDNGVYKKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNIT 120
Query: 87 GFLGT---GENPSPVTDSEIEHIMNQV--------------------------------- 110
G +G+ G P P++ SE ++N
Sbjct: 121 GIVGSSGKGAKPIPISSSEELDLLNGESFDQNYRIVITPNAIIEMDRNLFNERGELILDE 180
Query: 111 -------------------EAAVQRPVSSVFFE--VGERVCVSDGPFASFNGIVKNVDEE 149
+ + ++ E VG V ++ G ++ +G + + +
Sbjct: 181 NAAKTIVHKKKSDSADKYGDMSTEKEQVDEAIELKVGHMVDINSGDYSGLSGQISRI-ID 239
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVE 174
V+V I G++ V+L Q++
Sbjct: 240 NDEYIVDVQILGKLVSVKLNKKQLK 264
>gi|212710331|ref|ZP_03318459.1| hypothetical protein PROVALCAL_01390 [Providencia alcalifaciens DSM
30120]
gi|212687138|gb|EEB46666.1| hypothetical protein PROVALCAL_01390 [Providencia alcalifaciens DSM
30120]
Length = 164
Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 17/176 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+WY++ + + + P + V +G++ FP
Sbjct: 3 KWYLLYCKRGQ-------LERAVEHLTRQDVA--CMTPMTEMEKVVRGKRTVVTEALFPN 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ +K TI+ T V F+ G P+ V + IE I + Q P
Sbjct: 54 YLFVKFDHEQIHTTTIQSTRGVSHFIRFGVLPAEVPEEIIELIQQTPISHTQSPDLPSH- 112
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE--LAYNQVEKIV 177
G+ V +++G FA N I + E SR + + I T VE + Q +K +
Sbjct: 113 --GDNVVITEGIFAGVNAIFNEPNGE-SRSILLLNILN--TTVEKVIDNTQFKKAI 163
>gi|332181380|gb|AEE17068.1| hypothetical protein Trebr_1645 [Treponema brennaborense DSM 12168]
Length = 175
Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 5/171 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y + V + E+K +S+ + G + ++ ++ + ++ GR FFPGYV
Sbjct: 4 YCISVRTGMEEKFRQSVLTFVE--GDERVLCGRLHILKKRMRLKSGR--EYFESFFPGYV 59
Query: 66 LIKAVMTDKVYHTIKDT-PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
++ +D + FL + P+ S+ E + ++ + V F+
Sbjct: 60 FLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIVPVTFD 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ + + PF F+G V V+ R+++E+ V V L Y +V K
Sbjct: 120 KGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170
>gi|261343102|ref|ZP_05970960.1| transcriptional activator RfaH [Enterobacter cancerogenus ATCC
35316]
gi|288314668|gb|EFC53606.1| transcriptional activator RfaH [Enterobacter cancerogenus ATCC
35316]
Length = 163
Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + +++G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGKRALVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G +P+ V + I ++ +
Sbjct: 55 LFVEFDP--EVIHTTTISATRGVSHFVRFGASPATVPSTVIHQ-LSVYQQPEGITDPETP 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
+ G+ V +++G F I D E +R + + + +
Sbjct: 112 YA-GDSVVITEGAFEGLQAIFSEPDGE-ARSMLLLNLLNKQV 151
>gi|294085518|ref|YP_003552278.1| hypothetical protein SAR116_1951 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665093|gb|ADE40194.1| hypothetical protein SAR116_1951 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 172
Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 3/151 (1%)
Query: 27 SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVI 86
++ LD P +R + ++ FPGY + + T +
Sbjct: 24 AQRNLDRQGFVYFCPMQRETVRSAAQFRQQTKQLFPGYCFVHMNPASGDVRKLNATHGIS 83
Query: 87 GFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
+ G S V I + N+ + + VG+ V + G FA F G V+
Sbjct: 84 RLVSFGAGQISKVPTQLIAALQNRCDETNCLIAPA-SLAVGDEVRILSGAFAEFVGTVET 142
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ + R+ + G+ + V++ +EK+
Sbjct: 143 IS-KSDRLRILFDFMGQKSHVDMPQQNLEKL 172
>gi|317053793|ref|YP_004118927.1| NusG antitermination factor [Pantoea sp. At-9b]
gi|316952898|gb|ADU72371.1| NusG antitermination factor [Pantoea sp. At-9b]
Length = 170
Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 20/168 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR-KVNSERRFFPG 63
WY+ Q EK+A + + + P V ++ G + +E+ FP
Sbjct: 4 WYVAQTKYAQEKRAQQQLLSQGVT---------CLFPVFSEVRLQNGGIRRIAEQPLFPN 54
Query: 64 YVLIKAVMTDKVYHT--IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
Y+ ++ +V HT IK T V + G PS V DS I + E A + V
Sbjct: 55 YIFVRFDP--EVVHTTAIKATRGVSSLISFGGLPSVVPDSVIIRLNQGWERAPLNTDAPV 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV--TPVE 167
G+RV + DG F + D K R + + + R PVE
Sbjct: 113 H---GDRVVIRDGAFEGLEAVWYEPDGLK-RAMLLLTLMNREVRVPVE 156
>gi|188532399|ref|YP_001906196.1| transcriptional activator RfaH [Erwinia tasmaniensis Et1/99]
gi|188027441|emb|CAO95288.1| Transcriptional activator [Erwinia tasmaniensis Et1/99]
Length = 166
Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E +G + P + +G+ FP Y
Sbjct: 4 WYLLYCKRGQLLRAQEHLGRQAVH---------CLSPMVSIEKTVRGKPTRVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ V I + ++ +
Sbjct: 55 LFVEFDPESIHTTTISATRGVSHFVRFGNQPATVPLDVINALQTHPALSIDDAE---LPQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
VG+ V +++G F I D E +R + + + +
Sbjct: 112 VGDTVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150
>gi|238798045|ref|ZP_04641534.1| Transcriptional activator rfaH [Yersinia mollaretii ATCC 43969]
gi|238718148|gb|EEQ09975.1| Transcriptional activator rfaH [Yersinia mollaretii ATCC 43969]
Length = 162
Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ +A E + + P + + +G++ FP
Sbjct: 2 KQWHLLYCKRGQLLRAKEHLERQAVN---------CWTPLVIIEKIVRGKRAEVTEPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ D TI T V F+ G P+ + I + Q A + V
Sbjct: 53 NYLFVEFNAEDIHTTTISATRGVSHFVRFGAQPAVIPAIVITEM--QSHTADKIIAPEVP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G FA I D E +R + + + L Q EK
Sbjct: 111 L-PGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVIQSLENRQFEK 161
>gi|332181956|gb|AEE17644.1| hypothetical protein Trebr_2235 [Treponema brennaborense DSM 12168]
Length = 175
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 5/171 (2%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y + V + E+K +S+ + G + ++ ++ + ++ GR FFPGYV
Sbjct: 4 YCISVRTGMEEKFRQSVLTFVE--GDERVLCGRLHILKKRMRLKSGR--EYFESFFPGYV 59
Query: 66 LIKAVMTDKVYHTIKDT-PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
++ +D + FL + P+ S+ E + ++ + V F+
Sbjct: 60 FLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIVPVTFD 119
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+R+ + + PF F+G V V+ R+++E+ V V L Y +V K
Sbjct: 120 KGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170
>gi|74314353|ref|YP_312772.1| transcriptional activator RfaH [Shigella sonnei Ss046]
gi|73857830|gb|AAZ90537.1| transcriptional activator affecting biosynthesis of
lipopolysaccharide core, F pilin, and haemolysin
[Shigella sonnei Ss046]
Length = 162
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ ++A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ ++ +V H TI T V F+ G + + V + I + V +
Sbjct: 55 LFVEFDP--EVIHTTTINATRGVSHFVRFGASLAIVPSAVIHQL--SVYKPKDIVDPATP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ G++V +++G F F I D E +R + + + +
Sbjct: 111 Y-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149
>gi|329298149|ref|ZP_08255485.1| transcriptional activator RfaH [Plautia stali symbiont]
Length = 162
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQEVN---------CLSPMIALEKIVRGKRTTVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ I+ TI T V F+ G P+ V IE + + P + +
Sbjct: 55 LFIEFDPEAIHTTTISSTRGVSHFVRFGAMPATVPYEVIEALQTDAPQILLDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++D F I D E R + + + + + Q K+
Sbjct: 112 VGDEVLITDSTFEGLRAIFAEPDGET-RSILRLNLLNKQVMRSVDNKQFRKV 162
>gi|270264322|ref|ZP_06192589.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270041971|gb|EFA15068.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 162
Score = 80.9 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + V +G+++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAQEHLVRQEVN---------CLSPIITLEKVVRGKRIAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TI T V F+ G P+ + IE + P + +
Sbjct: 55 LFVEFDPERIHTTTISATRGVSHFVRFGSLPTTIPQKVIEELQTHTCETYFDPET---PQ 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + DG F I D E +R + + + + + Q +K+
Sbjct: 112 PGDTVLIVDGMFEGLKAIYTEPDGE-ARSMLLLNLINKQVSQSVDNRQFQKL 162
>gi|94970525|ref|YP_592573.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
gi|94552575|gb|ABF42499.1| transcription antitermination protein nusG [Candidatus Koribacter
versatilis Ellin345]
Length = 194
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
W + Y EKK E + R G++ + P + + V FPG
Sbjct: 27 WSALFTYPRHEKKVAEQLLCR----GVESFL-----PLYAEKRTWKNRQTVTLTLPLFPG 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV + D+V + P V+ + S ++D IE + + RP
Sbjct: 78 YVFARFARRDRV--RVMSLPGVVSIVERAGAVSSISDHYIEKLRAGIRLGRVRPFREAIL 135
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G+RV ++ GP + G++ + E RV V + + G+ +E+ +++
Sbjct: 136 --GDRVQITSGPLSGLEGVLMHFRSE-FRVVVSIGMIGQSVSIEVLRDEI 182
>gi|313203456|ref|YP_004042113.1| ngn domaiN-containing protein [Paludibacter propionicigenes WB4]
gi|312442772|gb|ADQ79128.1| NGN domain-containing protein [Paludibacter propionicigenes WB4]
Length = 176
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E R S G++H + ++V R GY
Sbjct: 16 WYAVYTAPRAEKKVSE----RFSDVGIEHYLA-----LQKVKRRWSDRIKEVLIPVVNGY 66
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-FF 123
+ + DK + + I F+ G P + D +IE++ VE A + SV F
Sbjct: 67 IFVHIQ--DKDFEKVTKIYGAIAFVREGGRPVAIPDCQIENLRLMVEGADEPIEFSVEDF 124
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV-TPVELAYNQVEKIV 177
GE V ++ GP G + V K +V + + FG T V +++ +EK++
Sbjct: 125 ARGESVTITKGPLTGMMGELVEVKG-KHKVLIRLERFGSAITTVPVSF--IEKVL 176
>gi|222149506|ref|YP_002550463.1| transcription antitermination protein [Agrobacterium vitis S4]
gi|221736488|gb|ACM37451.1| transcription antitermination protein [Agrobacterium vitis S4]
Length = 220
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRF 60
RW + + S E ++ R L E P ER + RK + ER
Sbjct: 50 ARWVVARCKSGLE---------QVIRDALTEQGIECWCPCERRRLPPRRRKPAIVVERAL 100
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--- 117
F GY+ ++ + ++ Y + ++ +G P + ++ + + + A ++
Sbjct: 101 FRGYLFVRMIPDNEAYAGLLLASRLQSLMGRDGKPYLMPETLMRQLQLSAKTAERQHMDA 160
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
V + +G++V + GPFA F V+ V ++ +V V+V +FG ++ V + + +E
Sbjct: 161 CGVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTMGVDAIE 219
>gi|51594618|ref|YP_068809.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP
32953]
gi|153948031|ref|YP_001399276.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP
31758]
gi|186893619|ref|YP_001870731.1| transcriptional activator RfaH [Yersinia pseudotuberculosis PB1/+]
gi|51587900|emb|CAH19503.1| putative regulatory protein [Yersinia pseudotuberculosis IP 32953]
gi|152959526|gb|ABS46987.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP
31758]
gi|186696645|gb|ACC87274.1| transcriptional acivator RfaH [Yersinia pseudotuberculosis PB1/+]
Length = 162
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ +A E + + P + + +G+++ FP
Sbjct: 2 KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + T+ T V F+ G P+ + + I + Q A + V
Sbjct: 53 NYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADM--QAHAVDKIIAPEVP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ V + DG FA I D E +R + + + L Q EK
Sbjct: 111 -KPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161
>gi|170026148|ref|YP_001722653.1| transcriptional activator RfaH [Yersinia pseudotuberculosis YPIII]
gi|169752682|gb|ACA70200.1| transcriptional acivator RfaH [Yersinia pseudotuberculosis YPIII]
Length = 161
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ +A E + + P + + +G+++ FP
Sbjct: 2 KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + T+ T V F+ G P+ + + I + Q A + V
Sbjct: 53 NYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADM--QAHAVDKIIAPEVP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ V + DG FA I D E +R + + + L Q EK
Sbjct: 111 -KPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161
>gi|254490679|ref|ZP_05103864.1| KOW motif domain protein [Methylophaga thiooxidans DMS010]
gi|224464135|gb|EEF80399.1| KOW motif domain protein [Methylophaga thiooxydans DMS010]
Length = 56
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ FE GE V V+DGPF F G+V+ V+ EKS++ VEVVIFGR TPVEL ++QV K
Sbjct: 1 MLFEPGEVVRVTDGPFNDFTGVVEEVNYEKSKLRVEVVIFGRSTPVELEFSQVAK 55
>gi|150396868|ref|YP_001327335.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
gi|150028383|gb|ABR60500.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
Length = 219
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SERRFFP 62
W+ ++V++ EK +S+ RS +P + +R+ +V
Sbjct: 52 WFALRVWTGREKTVEKSLDIMAVRS---------LVPMRKGPDLRRRGRVIEGQMMPVIH 102
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + + + VI LG E P ++D E+ V
Sbjct: 103 GYVLVQMMALSEYLAGLLGVEHVIDVLGGCERPMRLSDKEVNRFNGLARNGNFDWERPVD 162
Query: 123 FEV--GERVCVSDGPFASFNGIVKNVDEE-KSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GE V ++ GPF V ++ + V V + G PV + ++K+
Sbjct: 163 LVVRAGEPVLITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALLKKL 219
>gi|223934754|ref|ZP_03626674.1| NusG antitermination factor [bacterium Ellin514]
gi|223896709|gb|EEF63150.1| NusG antitermination factor [bacterium Ellin514]
Length = 205
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 10/172 (5%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
P WY V+ E A ++ V E PS R + V F
Sbjct: 31 EPAWYCVRSKPKHEHIAAANLSKL--------QVVETFNPSLRSRKATRRGPVWMTESLF 82
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ + ++++ +K T V + G V IE + A + S V
Sbjct: 83 PNYIFARF-PFEQMFDEVKYTRGVSSLVHFGTGYPEVPADVIEELRRNFPANELKLSSEV 141
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G++V ++ G+V + RV V + + G+ + VEL N V
Sbjct: 142 P-TAGDQVTITSRALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192
>gi|121606088|ref|YP_983417.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
gi|120595057|gb|ABM38496.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
Length = 184
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++ E ++ L ++ +P + + F Y
Sbjct: 23 WFLAHTRPRLE---------TVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVFEPMFSRY 73
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-F 123
V + + ++ T V + G + + ++ I + V+ +
Sbjct: 74 VFFRTTSLAQSIAPVRSTRGVAQIVSFGSEFATIRPDMLDAIRQLEQLRNAADVAELSTL 133
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V + + G+VK+V RV V + I GR V + ++Q+
Sbjct: 134 RPGHLVRFCNSALSGLEGVVKSVSS--CRVAVLLEIMGRQQLVRVDHHQL 181
>gi|119469076|ref|ZP_01612060.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7]
gi|119447328|gb|EAW28596.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7]
Length = 161
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+V E++A ++ + G++ P + K R+ + FP Y
Sbjct: 4 WYLVICKPRQEERAKANL----NNQGIEA-----FYPILTTEKLVKSRRTVKQVALFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + + +K+T + GF+ G N V + IEH+ N V+ +
Sbjct: 55 LFVCLDSKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNHTSNTVESQLPKQ--- 111
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V VS+ F + + I K D + R + + + + + + +E
Sbjct: 112 -GDAVSVSNHSFKNIDAIYKEPDGD-MRSILLINLLNKQVEMSVDNTDIE 159
>gi|298385535|ref|ZP_06995093.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|298261676|gb|EFI04542.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 192
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E + G+++ + P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVSEYLDK----MGIENFI-----PLQQEMHQWSDRRKLIESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++V T + NP+ + D ++ ++ + + +SS
Sbjct: 75 PMMVFVHADPKERVEVLSLSTVSRYMVMRGESNPAVIPDEQMARFRFMLDYSKEAVCMSS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + +VD KS++ V + + G
Sbjct: 135 SPLARGEQVRVIKGPLSGLVGELVSVDG-KSKIAVRLNMLG 174
>gi|221134306|ref|ZP_03560611.1| transcriptional activator RfaH [Glaciecola sp. HTCC2999]
Length = 176
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ + E +AV L + + P + V +G++ E FP
Sbjct: 15 KVWYLLYCKAKEEGRAV---------MHLANQGIDAFYPKANITKVLRGKRQTVEEALFP 65
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + + +++ T VIGF+ G++ V+ + I+ V+ + S
Sbjct: 66 NYVFAQLDHDVHNFTSVRSTRGVIGFVKQGKDYQKVSQALIDVF---VQCDTVDKLDSAL 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V + + + I + E R + + + + + + +Q K
Sbjct: 123 PTKGDNVMLQHPQYQNIPAIYQEPKGEN-RAILLIHLLNKPVELVVDNSQFTK 174
>gi|139436873|ref|ZP_01771033.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC
25986]
gi|133776520|gb|EBA40340.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC
25986]
Length = 167
Score = 79.8 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 4/155 (2%)
Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
E I + S + L P + G V++ + FPGY++ V
Sbjct: 2 RERIERMVPASAMQELFY----PQYQTEIKVHGEWVSTTKPLFPGYLICDTADPRTVQQY 57
Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138
+ L P+ E + I + + S + G++V V+ GP
Sbjct: 58 LLRMDDFARVLSQDGQFVPLAKEETQLIGSFTNRGDRVVPMSEALKDGDQVVVTAGPLLG 117
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G++K ++ KS ++E+ + GR + +
Sbjct: 118 HEGLIKTINRRKSTAYLELDLCGRRVTTRVGLAVL 152
>gi|123440656|ref|YP_001004649.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087617|emb|CAL10398.1| putative regulatory protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 162
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G+++ + FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIMRGKRIETTEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ TI T V F+ G P+ + + I + + + P
Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPATVISEMQSHTTDKIIAPEIPT- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V + +G FA I D E +R + + + L Q EK
Sbjct: 112 --PGDTVIIKEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161
>gi|253567771|ref|ZP_04845182.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298388201|ref|ZP_06997734.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|251841844|gb|EES69924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298259039|gb|EFI01930.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 192
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 11/160 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+ V + EKK E +G G+ E +P ++ + R+ E P
Sbjct: 25 KRWYVAHVRIHHEKKVAEYLGK----MGI-----ETFVPVQQEIHQWSDRRKLVETVLLP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
V + A +++ T L P+ + D ++ ++ + + +
Sbjct: 76 MMVFVHADPKERMAALTLATVSRYMVLRGEGKPAVIPDDQMARFRFMLDYSEEAICMNYS 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
G++V V GP G + +D KS++ V + + G
Sbjct: 136 PLARGKKVRVIKGPLTGLVGELVALDG-KSKIAVRLDMLG 174
>gi|85058093|ref|YP_453795.1| transcriptional activator RfaH [Sodalis glossinidius str.
'morsitans']
gi|84778613|dbj|BAE73390.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
Length = 163
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 17/162 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ + FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQAVA---------CLTPMVTLEKIIRGKRTETCEPLFPNY 54
Query: 65 VLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+ I+ + H TI T V F+ G P + + I + V P + +
Sbjct: 55 LFIEFDP--ETIHTTTISATRGVSHFVRFGSLPVIIPSAVINDLREHSFDNVTDPETPLS 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
G++V ++ G F I D E +R + + + +
Sbjct: 113 ---GDKVLITTGVFEGLQAIYTEPDGE-ARSMLLLNLLNKQV 150
>gi|261823464|ref|YP_003261570.1| transcriptional activator RfaH [Pectobacterium wasabiae WPP163]
gi|261607477|gb|ACX89963.1| transcriptional acivator RfaH [Pectobacterium wasabiae WPP163]
Length = 162
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A E + + P + + +G++ FP Y
Sbjct: 4 WYLLYCKRGQLLRAKEHLERQDVT---------CVSPMITLDKIVRGKRTEVCEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI-MNQVEAAVQRPVSSVFF 123
+ ++ TI T V F+ G P+ + I+ + + ++ +
Sbjct: 55 LFVEFDPERIHTTTISATRGVNSFVRFGALPATIPQQVIDELSLRPIQKIIDPLTP---- 110
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEE 149
+ G+ V ++DG F+ I D E
Sbjct: 111 QPGDNVVITDGVFSGLQAIYTEPDGE 136
>gi|29345786|ref|NP_809289.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337679|gb|AAO75483.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
Length = 192
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 11/160 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+ V + EKK E +G G+ E +P ++ + R+ E P
Sbjct: 25 KRWYVAHVRIHHEKKVAEYLGK----MGI-----ETFVPVQQEIHQWSDRRKLVETVLLP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
V + A +++ T L P+ + D ++ ++ + + +
Sbjct: 76 MMVFVHADPKERMAALTLATVSRYMVLRGEGKPAVIPDDQMASFRFMLDYSEEAICMNYS 135
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
G++V V GP G + +D KS++ V + + G
Sbjct: 136 PLARGKKVRVIKGPLTGLVGELVALDG-KSKIAVRLDMLG 174
>gi|89071010|ref|ZP_01158230.1| transcriptional antitermination protein, putative [Oceanicola
granulosus HTCC2516]
gi|89043434|gb|EAR49650.1| transcriptional antitermination protein, putative [Oceanicola
granulosus HTCC2516]
Length = 162
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
RL+ L + P ++ +G+ + + FPGY+ + T
Sbjct: 10 RLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMRAASYTRG 69
Query: 85 VIGFLG-TGENPSPVTDSEIEHIMNQVE-AAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142
V + P V D+ IE + + + P + +VG+RV V+DGP A
Sbjct: 70 VARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGPLAGQVSR 129
Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ + E +R+ + + + GR T V + V +
Sbjct: 130 IIALAPE-ARIWLLLDLMGRQTRVAVKREAVRR 161
>gi|238759597|ref|ZP_04620758.1| Transcriptional activator rfaH [Yersinia aldovae ATCC 35236]
gi|238702140|gb|EEP94696.1| Transcriptional activator rfaH [Yersinia aldovae ATCC 35236]
Length = 162
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G+++ + FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQAVN---------CWTPIATIEKIVRGKRIKTTEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ TI T V F+ G P+ + I + + + P V
Sbjct: 53 NYLFVEFDSEHIHTTTISATRGVSHFVRFGAQPAVIPAIVITDMQSHAADKIIAPEVPVT 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G FA I D E +R + + + L Q EK
Sbjct: 113 ---GDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIMQSLDNRQFEK 161
>gi|294054417|ref|YP_003548075.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
45221]
gi|293613750|gb|ADE53905.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
45221]
Length = 186
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ + E ++ ++ ++ ++ ++ R G++ E FPGY
Sbjct: 24 WFCLRTQTKREH-IAAAMLQQIEA--VESFCPRVS----QLRRTRAGKRRFVE-AMFPGY 75
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + ++ K H + T V + G + + D+ IE + + + + E
Sbjct: 76 IFARFNLSQKHRH-VTHTQGVKYLVKHGNRLA-IPDTIIESLRASLPNDM-IEAPDLSIE 132
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G + + G NG V ++RV V + GR V ++ + V
Sbjct: 133 EGANIELISGSLQGLNGTVLAQLPAENRVQVLLDFLGREITVAVSADSV 181
>gi|160941421|ref|ZP_02088757.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC
BAA-613]
gi|158435631|gb|EDP13398.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC
BAA-613]
Length = 160
Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 14/166 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+VQV + EK + + + P E G E FPGY
Sbjct: 3 WYVVQVRTGEEKDIAAKL---------TDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ Y+ +K P ++ L +T E E I + ++ E
Sbjct: 54 VFLQMDYNAGNYYRLKAVPGIVKLLSGT-----LTYLEAEWIRLLAGQGGRPLEPTLMRE 108
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
E + + G +F + +D+ R +E+ I G V+L
Sbjct: 109 TEEGLEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLGI 154
>gi|318607561|emb|CBY29059.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 162
Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G+++ + FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQKVN---------CWTPIVTIEKIMRGKRIETTEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ TI T V F+ G P+ + I + + + P
Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVISEMQSYTTDKIIAPEIPT- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G FA I D E +R + + + L Q EK
Sbjct: 112 --PGDTVIITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161
>gi|237714660|ref|ZP_04545141.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406525|ref|ZP_06083074.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647458|ref|ZP_06725042.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294806943|ref|ZP_06765766.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|229445429|gb|EEO51220.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355228|gb|EEZ04319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637200|gb|EFF55634.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294445830|gb|EFG14474.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 188
Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+VCV GP G + VD +S++ V + + G
Sbjct: 134 APLARGEKVCVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173
>gi|291544741|emb|CBL17850.1| Transcription antiterminator [Ruminococcus sp. 18P13]
Length = 186
Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y++Q + AV + L P + R G +E FPGYV
Sbjct: 3 YVLQTKPGQDDNAVRDLER---------LGYRSYAPRRIALHRRGGTWWEAEYPVFPGYV 53
Query: 66 LIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ +TD YH I VI FLG G P P+ + E E+I S V
Sbjct: 54 FLDDLELTDVDYHRIMPCVGVIRFLGHGA-PEPLPEHEAEYIRWLHNGGKPIAPSEVRIR 112
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ G +S+ G V + + R + + I G++ + L
Sbjct: 113 PDGSMQYVSGLISSYAGRV-EHNSRQRRATIRISIAGKLHRITL 155
>gi|298481184|ref|ZP_06999378.1| transcriptional regulator [Bacteroides sp. D22]
gi|298272758|gb|EFI14325.1| transcriptional regulator [Bacteroides sp. D22]
Length = 188
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + +D +S++ V + + G
Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTIDG-RSKIAVRLNMLG 173
>gi|227821697|ref|YP_002825667.1| hypothetical protein NGR_c11290 [Sinorhizobium fredii NGR234]
gi|227340696|gb|ACP24914.1| hypothetical protein NGR_c11290 [Sinorhizobium fredii NGR234]
Length = 169
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 17/177 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSER-RFFP 62
WY+V+ + ++KA + + P R + +K + F
Sbjct: 4 WYVVRTRAGQQQKA---------TREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLFT 54
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV--S 119
GYV ++D + T+++ V+ L G P PV + +E I + E +
Sbjct: 55 GYVFAYLRISD--FGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRPP 112
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V DGP V N+ ++ + V IFG + VE+ + ++
Sbjct: 113 VRRLKAGDTVQVKDGPLTGHYAAVTNIVGRRA-IKAFVEIFGSLREVEIGLESIRRV 168
>gi|218458943|ref|ZP_03499034.1| transcription antitermination protein NusG [Rhizobium etli Kim 5]
Length = 51
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V VSDGPFASFNG V++V EE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 1 GEQVRVSDGPFASFNGTVQDVAEERSRLKVEVSIFGRATPVELEYAQVEKV 51
>gi|295084056|emb|CBK65579.1| Transcription antiterminator [Bacteroides xylanisolvens XB1A]
Length = 188
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + VD +S++ V + + G
Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173
>gi|291279733|ref|YP_003496568.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1]
gi|290754435|dbj|BAI80812.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1]
Length = 163
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M W V E K + L+ E P + G+ +
Sbjct: 1 MKYYWRCVYCKPR-EAKVAK--------FYLEKGGFETFYPLIKEKKRVAGKIKEIHKEL 51
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+ ++ + D Y T+K T V + G P+ V D IE I +++
Sbjct: 52 FPNYLFVRFSVED--YRTVKYTKGVSRVVLGDNGEPAVVDDEIIEAIKGRMQDGFVVLEE 109
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F+ GE+V + DGPF F + + + RV + + +E+ Y++++
Sbjct: 110 K-GFKKGEKVLIKDGPFKGFEAVFLKEIKPRDRVLILLKTITGELKLEIDYDKLK 163
>gi|116329514|ref|YP_799234.1| transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116329829|ref|YP_799547.1| transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116122258|gb|ABJ80301.1| Transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116123518|gb|ABJ74789.1| Transcription antiterminator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 179
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 13/168 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + EKK + R E +P R E +P Y
Sbjct: 10 WYALYTNPRAEKKLKRLLQERK---------IECFLPLISKKKKWSDRWKVVEEPMYPSY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-- 122
+ +K I P F+ P + D ++ I +E R +
Sbjct: 61 IFVKISFFQDRV-KILQLPGAHHFVFYSGKPYVIPDEDLNLIRIFLETYPDRIQVEIQER 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
G+++ + +GPFA F + EK + V+ +T V L
Sbjct: 120 LLPGKKILIQEGPFAGFKAEIIQRKNEKQ-IIVKFPGMNLMTSVTLDI 166
>gi|302038023|ref|YP_003798345.1| putative transcription termination/antitermination factor NusG
[Candidatus Nitrospira defluvii]
gi|300606087|emb|CBK42420.1| putative Transcription termination/antitermination factor NusG
[Candidatus Nitrospira defluvii]
Length = 187
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 14/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + S EK + RL+ G+ E +P + +S RKV +E F GY
Sbjct: 25 WYAISTRSRHEKLVRD----RLAGIGV-----EPFLPLVKKLSQWTDRKVWTESPLFSGY 75
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + + H + TP + +G+ P + D E+ I E+ +
Sbjct: 76 CFARFSLMNS--HAVLQTPGTVRIVGSL-IPESIPDEEVAAIQKLAESRRAFERHD-YLT 131
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V V GP G + + + + V + + V + ++V+ I
Sbjct: 132 EGAWVEVVRGPLTGLRGQLLR-KANQDCLVIRVHLIQQAATVHIDMSEVQPI 182
>gi|332159889|ref|YP_004296466.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325664119|gb|ADZ40763.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859156|emb|CBX69508.1| transcriptional activator rfaH [Yersinia enterocolitica W22703]
Length = 162
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G+++ + FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIMRGKRIETTEVLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ TI T V F+ G P+ + I + + + P +
Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVISEMQSYTTDKIIAPEIPM- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G FA I D E +R + + + L Q EK
Sbjct: 112 --PGDTVIITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161
>gi|313202886|ref|YP_004041543.1| nusg antitermination factor [Paludibacter propionicigenes WB4]
gi|312442202|gb|ADQ78558.1| NusG antitermination factor [Paludibacter propionicigenes WB4]
Length = 158
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 20/173 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ S EK RL G++ + P R E F Y
Sbjct: 3 WYLLYTASRAEKLV----EQRLKAEGVETYLPLHLSP-----RRWSDRVALVELPLFSSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TD++ + V+ + P+ + +EI+ I +E A + + F
Sbjct: 54 IFVRT--TDEILRGLVRVNGVLRIIFYNARPAIIKPTEIDSIKLFIEKAKGKICT---FG 108
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQVEKI 176
+ + V ++ GP + +G V V +E + + + IF V + NQV KI
Sbjct: 109 LNDEVQIACGPLKNIDGTVTKVGKEYIILQIAQIGIF-----VSVKLNQVVKI 156
>gi|325279693|ref|YP_004252235.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
gi|324311502|gb|ADY32055.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
Length = 207
Score = 77.8 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 16/174 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V + EKK E RL + G+++ + P V RK GY
Sbjct: 29 WYAVYTAARAEKKVKE----RLDQIGIENYL-----PLRTEYRVWSDRKKKVSVPLISGY 79
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--VSSVF 122
+ + ++ + + TP V+ FL + +IE + VE P +S
Sbjct: 80 IFVHIK--EETFVPVLTTPGVVTFLKEKGKAVAIPAEQIER-LRFVENQADEPLEISYED 136
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V V G A F G + + +K R+ + + G + +A + VEK+
Sbjct: 137 IPAGTLVEVVRGKLAGFQGEMVQI-RDKYRIVLRLEKLG-CALITVAASCVEKV 188
>gi|238793505|ref|ZP_04637129.1| Transcriptional activator rfaH [Yersinia intermedia ATCC 29909]
gi|238727095|gb|EEQ18625.1| Transcriptional activator rfaH [Yersinia intermedia ATCC 29909]
Length = 162
Score = 77.8 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G+++ + FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQTVN---------CWTPIVTIEKIVRGKRIEASEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ TI T V F+ G P+ + I + + + P V
Sbjct: 53 NYLFVEFDPEYIHTTTISATRGVSHFVRFGAQPAVIPAIVIAEMQSHTMDKIIAPEVPV- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V + +G FA I D E +R + + + L Q EK
Sbjct: 112 --PGDIVTIIEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVMQSLDNRQFEK 161
>gi|220923966|ref|YP_002499268.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219948573|gb|ACL58965.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 173
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 4/142 (2%)
Query: 31 LDHLVTEITIPSER-VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
L +PS VV K R FPGY + ++ + I P V +
Sbjct: 30 LQQAGFVTLVPSRTAVVRQASSGKRLVRRPVFPGYAFVG-KRPEQSWRDILRVPGVRALV 88
Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
TGE P+ + + ++ + VG++V + D + G V E
Sbjct: 89 TTGEAPTELPP-WMMKMLIAADEMAAYDRPRPQLAVGDKVRIRDELWQGLIGEVMR-APE 146
Query: 150 KSRVHVEVVIFGRVTPVELAYN 171
R+ V + FG+ + + +
Sbjct: 147 GRRIAVLLKAFGKKHVLSVDVD 168
>gi|160884473|ref|ZP_02065476.1| hypothetical protein BACOVA_02457 [Bacteroides ovatus ATCC 8483]
gi|293369767|ref|ZP_06616343.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|299145978|ref|ZP_07039046.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
gi|156110212|gb|EDO11957.1| hypothetical protein BACOVA_02457 [Bacteroides ovatus ATCC 8483]
gi|292635189|gb|EFF53705.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|298516469|gb|EFI40350.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
Length = 191
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + VD +S++ V + + G
Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173
>gi|218260979|ref|ZP_03476006.1| hypothetical protein PRABACTJOHN_01670 [Parabacteroides johnsonii
DSM 18315]
gi|218224271|gb|EEC96921.1| hypothetical protein PRABACTJOHN_01670 [Parabacteroides johnsonii
DSM 18315]
Length = 180
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 20/172 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ EK+ + R+ G++ +P R V R E F Y
Sbjct: 25 WYVLYTAPRAEKQVRD----RIDALGIE-----CWLPLHRTPRVWSDRVKIVELPLFNSY 75
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ ++ + I+ V + P+ V EI+ I ++ A +
Sbjct: 76 LFVRCT-DPELRNLIR-VYGVARIVYYNGKPAVVRQKEIDAIQEFLDQASEHA-----LC 128
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE V + G +G VK + +K+ + + + G V + + V ++
Sbjct: 129 PGEEVEILCGAMKHVSGKVKKI--KKNHLVLYLEQLG--ATVCVKLDDVARV 176
>gi|160887485|ref|ZP_02068488.1| hypothetical protein BACOVA_05504 [Bacteroides ovatus ATCC 8483]
gi|156107896|gb|EDO09641.1| hypothetical protein BACOVA_05504 [Bacteroides ovatus ATCC 8483]
Length = 193
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLGKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLSGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|149199619|ref|ZP_01876652.1| putative transcriptional activator [Lentisphaera araneosa HTCC2155]
gi|149137272|gb|EDM25692.1| putative transcriptional activator [Lentisphaera araneosa HTCC2155]
Length = 169
Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + E +S P V VR+G+ FP Y
Sbjct: 6 WYCLYTKPRQENLTAQSAL---------DAGFPTFNPKIEVRKVRRGKATYVHAALFPSY 56
Query: 65 VLIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V I+A ++ ++IGF G + +E + +E V +
Sbjct: 57 VFIQANEGNLDKARYLRGVNRIIGF-GRDGESLKIPAVILETLSTFLEDNVYKHDMH-EL 114
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G++V V DGP I K ++ R V +F ++ + K
Sbjct: 115 KDGDKVQVLDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIEDLIK 166
>gi|133872302|gb|ABO40221.1| transcription antitermination component [Candidatus Liberibacter
africanus]
Length = 49
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/49 (85%), Positives = 46/49 (93%)
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VCVSDGPFASFNGIVK+VDEE+SR+ VEV IFGR TPVELAYNQVEK+V
Sbjct: 1 VCVSDGPFASFNGIVKDVDEERSRLKVEVSIFGRATPVELAYNQVEKVV 49
>gi|310642839|ref|YP_003947597.1| nusg antitermination factor [Paenibacillus polymyxa SC2]
gi|309247790|gb|ADO57357.1| NusG antitermination factor [Paenibacillus polymyxa SC2]
Length = 173
Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V + E++ + V + IP + + G FP Y
Sbjct: 3 WYVLFVRTGREERVKQLFNKWFDSE-----VYKPFIPIQERLFKVAGTVKKELAPLFPSY 57
Query: 65 VLIKAVMTD-----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V I++ + D I + +I L + + + D E + + + S
Sbjct: 58 VFIESNLPDLQFVTSTNSMIYTSSDIIRLLRYSKLEASMRDCERQVLESLCNDRYCIECS 117
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ E G+ + + +GP + IVK +D K + +++ G + V +A + K+
Sbjct: 118 TGIIE-GDNIRIIEGPLKGRSSIVKKIDRHKRQAVIQLEFMGDIRLVNVALEIISKV 173
>gi|320540297|ref|ZP_08039949.1| DNA-binding transcriptional antiterminator [Serratia symbiotica
str. Tucson]
gi|320029617|gb|EFW11644.1| DNA-binding transcriptional antiterminator [Serratia symbiotica
str. Tucson]
Length = 158
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 17/172 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ +A + + + P + + +G+++ FP Y
Sbjct: 4 WYLLYCKRGQLSRAQKHLKWQAVN---------CFTPIITLEKIVRGKRIAVSEPLFPNY 54
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + T T+ T V F+ G P+ + IE + Q+ +
Sbjct: 55 LFVLFDHTT----TLSATRGVSHFVRFGALPATIPYRVIEEL--QIHVGETCVDPQTP-Q 107
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + +G F I D E R + + + + L Q +K+
Sbjct: 108 PGDTVLIVNGVFEGLCAIYTEPDGET-RSMLLLNLLHKQVSQSLDNRQFQKV 158
>gi|126734253|ref|ZP_01750000.1| transcriptional antitermination protein, putative [Roseobacter sp.
CCS2]
gi|126717119|gb|EBA13983.1| transcriptional antitermination protein, putative [Roseobacter sp.
CCS2]
Length = 172
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 12/172 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++Q+ N G L+R+ L +P V + + FPGY
Sbjct: 10 WFVLQLKPN---------GLSLARTHLARQGFLTLMPLREVSQHARYGLRTVRQPLFPGY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGF-LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
+ + +T V +GT P+ + ++ +
Sbjct: 61 LFFSVTARQINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDGMLGDVA-DL 119
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G++V V +GPFA + V + D R+ + V + GR T V +A +EK
Sbjct: 120 QTGDQVGVVNGPFAGWMAKVVSADT-PDRIQLLVDVMGRETAVNIAGRDLEK 170
>gi|222149046|ref|YP_002550003.1| transcription antitermination protein [Agrobacterium vitis S4]
gi|221736031|gb|ACM36994.1| transcription antitermination protein [Agrobacterium vitis S4]
Length = 220
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRF 60
RW + + S E ++ R L + P ER + RK ER
Sbjct: 50 ARWVVARCKSGLE---------QVIRDALAEQGIDCWCPCERRRLPPRRRKPALVVERPL 100
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
F GY+ ++ + ++ Y + ++ +G P + ++ + + +AA +R
Sbjct: 101 FRGYLFVRVIPDNEAYAGLLLASRLQSLMGQDGKPYLMPETLMRQLQLSAKAAERRHMDA 160
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V + +G++V + GPFA F V+ V ++ +V V+V +FG ++ V + +
Sbjct: 161 GDVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTVGVEAI 218
>gi|116783316|gb|ABK22888.1| unknown [Picea sitchensis]
Length = 379
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFFP 62
+W+++ V N E+ E + + + +P ++ G S++R FP
Sbjct: 80 QWWMLLVPRNSERLVAEDLSKAFPSE-FPDIEFQAYLPEIPSRRKLKNGSYSESKKRMFP 138
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--------NPSPVTDSEIEHIMNQVEAAV 114
GY+ I+ + +++ I++TP+V GF+G P PV +E+E +V+
Sbjct: 139 GYLFIRCPLNKEIHDFIRNTPRVRGFVGRKVGSMIRQMIKPKPVPIAEMEETFRKVKEEQ 198
Query: 115 QRPVSSV 121
+ +
Sbjct: 199 EAYDIEI 205
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
G V V G F F G +K +D + + + +++ G PV +
Sbjct: 310 GSPVRVISGAFTEFTGHLKEIDADAGKAKLMLMMSGHELPVNMEI 354
>gi|220922583|ref|YP_002497885.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219947190|gb|ACL57582.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 196
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
Query: 45 VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
VV K R FPGY + ++ + I P V + TGE P+ + +
Sbjct: 68 VVRQASSGKRLVRRPVFPGYAFVG-KRPEQSWRDILRVPGVRALVTTGEAPTELPP-WMM 125
Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
++ + VG++V + D + G V E R+ V + FG+
Sbjct: 126 KMLIAADEMGAYDRPRPQLAVGDKVRIRDELWQGLIGEVMR-APEGRRIAVLLKAFGKKH 184
Query: 165 PVELAYN 171
+ + +
Sbjct: 185 VLSVDVD 191
>gi|297833678|ref|XP_002884721.1| PTAC13 [Arabidopsis lyrata subsp. lyrata]
gi|297330561|gb|EFH60980.1| PTAC13 [Arabidopsis lyrata subsp. lyrata]
Length = 337
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 3 PRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV-SVRKGRKVNSERR 59
P+W++V+V E I R + + PS +V ++ G +
Sbjct: 96 PQWWVVRVSRLRGHET---AQILARALARQFPEMEFTVYAPSVQVKRKLKNGSISVKPKP 152
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111
FPG + I+ ++ +++ +I++ V GF+G+ P PV DS++E I Q +
Sbjct: 153 VFPGCIFIRCILNKEIHDSIREVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAK 212
Query: 112 AAVQRP 117
A ++
Sbjct: 213 EAQEKA 218
Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V G FA F G +K ++ + ++ V +FG+ T VE+ N++
Sbjct: 284 GSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINEL 331
>gi|160885742|ref|ZP_02066745.1| hypothetical protein BACOVA_03746 [Bacteroides ovatus ATCC 8483]
gi|293370261|ref|ZP_06616821.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|299146226|ref|ZP_07039294.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
gi|156108555|gb|EDO10300.1| hypothetical protein BACOVA_03746 [Bacteroides ovatus ATCC 8483]
gi|292634758|gb|EFF53287.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|298516717|gb|EFI40598.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
Length = 193
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + VD +S++ V + + G
Sbjct: 134 APLARGEKVRVVKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173
>gi|307310231|ref|ZP_07589880.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
gi|306899783|gb|EFN30408.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
Length = 219
Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 14/177 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SERRFFP 62
W+ ++V++ EK +S+ RS +P + +R+ +V
Sbjct: 52 WFALRVWTGREKIVEKSLDAMGVRS---------LVPMRKGPDLRRRGRVIEGQMMPVIH 102
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL++ + + + VI LG + P ++D+E+ V
Sbjct: 103 GYVLVQMMALSEYLAGLLGLEHVIDVLGGCDRPMRLSDNEVSRFNGLARNGNFDWERPVH 162
Query: 123 FEV--GERVCVSDGPFASFNGIVKNVDEE-KSRVHVEVVIFGRVTPVELAYNQVEKI 176
V GE V ++ GPF V ++ + V V + + G PV + ++K+
Sbjct: 163 LVVRAGEPVWITAGPFCGRKATVVTPSKKGRGDVVVSIDLMGGEVPVTVPLALLKKL 219
>gi|154492599|ref|ZP_02032225.1| hypothetical protein PARMER_02233 [Parabacteroides merdae ATCC
43184]
gi|154087824|gb|EDN86869.1| hypothetical protein PARMER_02233 [Parabacteroides merdae ATCC
43184]
Length = 180
Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 20/172 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ EK+ + R++ G++ +P R V R E F Y
Sbjct: 25 WYVLYTAPRAEKQVRD----RINALGVE-----CWLPLHRAPRVWSDRVKIVELPLFNSY 75
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ ++ TD + V + P+ V EI+ I + ++ A +
Sbjct: 76 LFVRC--TDPELRNLTRVYGVARIVYYNGKPAVVRQKEIDAIQDFLDQASEHA-----LC 128
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE V + G +G VK + +K+ + + + G V + + V ++
Sbjct: 129 PGEEVEILCGAMKHVSGKVKKI--KKNHLVLYLEQLG--ATVCVKLDDVARV 176
>gi|238763685|ref|ZP_04624645.1| Transcriptional activator rfaH [Yersinia kristensenii ATCC 33638]
gi|238698163|gb|EEP90920.1| Transcriptional activator rfaH [Yersinia kristensenii ATCC 33638]
Length = 162
Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + P + + +G++ FP
Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIARGKRTEMTEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ ++ TI T V F+ G P+ + I + + + P
Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVITEMQSHTADKIIDPGMPT- 111
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G F+ + I D E +R + + + L Q EK
Sbjct: 112 --PGDVVTITEGIFSGLHAIYTEPDGE-ARSMLLLNMLNSQVLQSLDNRQFEK 161
>gi|197287347|ref|YP_002153219.1| transcriptional activator RfaH [Proteus mirabilis HI4320]
gi|227356968|ref|ZP_03841340.1| transcriptional activator [Proteus mirabilis ATCC 29906]
gi|194684834|emb|CAR46935.1| transcriptional activator [Proteus mirabilis HI4320]
gi|227162846|gb|EEI47805.1| transcriptional activator [Proteus mirabilis ATCC 29906]
Length = 166
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 15/175 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A+E + ++ P + + + ++ FP
Sbjct: 2 KNWHLLYCKRGQIARAIEHLER-------QQVI--CFTPMVTIEKLIRNKRTLVTEPLFP 52
Query: 63 GYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
Y+ I+ +V H TI T V F+ G P V I+ + + ++V +
Sbjct: 53 NYLFIQFDP--EVIHTTTINSTRGVNAFVRFGRYPVTVPQEVIDTLQSPTPSSVIYSEEN 110
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
V G+ V +++G F I + D E R + + I + + +K
Sbjct: 111 VP-HSGDYVLITEGVFQGIKAIYQEPDGET-RSILLLKILNNEVKKSVDNKEFKK 163
>gi|261368740|ref|ZP_05981623.1| putative transcription termination factor NusG [Subdoligranulum
variabile DSM 15176]
gi|282569162|gb|EFB74697.1| putative transcription termination factor NusG [Subdoligranulum
variabile DSM 15176]
Length = 185
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER-R 59
M+ Y++QV + EK I GRL ++G+ V +R+G + +
Sbjct: 1 MSM--YVLQVITGREK----DICGRLRKAGIPAYCPRA------VRQIRRGGRWQEQTYT 48
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+P Y+ ++ VY+ ++ V+ +LG T P P++ E +I+ Q PV
Sbjct: 49 LYPAYIFVQCERVVDVYYAVRREDGVLYWLGATRGTPEPLSADEEANILWLAGDGPQ-PV 107
Query: 119 SSVFFEVGERVCVSDGP---FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
S + + GP A + ++V + R + + G+ + L++
Sbjct: 108 SKAVCRADGSLDFTSGPLKRLAELEAL-RSVFRRERRATAVLPLHGKEHKINLSFE 162
>gi|22124375|ref|NP_667798.1| transcriptional activator RfaH [Yersinia pestis KIM 10]
gi|45443029|ref|NP_994568.1| transcriptional activator RfaH [Yersinia pestis biovar Microtus
str. 91001]
gi|108809431|ref|YP_653347.1| transcriptional activator RfaH [Yersinia pestis Antiqua]
gi|108810360|ref|YP_646127.1| transcriptional activator RfaH [Yersinia pestis Nepal516]
gi|145600640|ref|YP_001164716.1| transcriptional activator RfaH [Yersinia pestis Pestoides F]
gi|153997171|ref|ZP_02022304.1| DNA-binding transcriptional antiterminator [Yersinia pestis
CA88-4125]
gi|162421310|ref|YP_001606389.1| transcriptional activator RfaH [Yersinia pestis Angola]
gi|165926271|ref|ZP_02222103.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939165|ref|ZP_02227716.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
str. IP275]
gi|166012151|ref|ZP_02233049.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213613|ref|ZP_02239648.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398803|ref|ZP_02304327.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420836|ref|ZP_02312589.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426298|ref|ZP_02318051.1| transcriptional activator RfaH [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167468668|ref|ZP_02333372.1| transcriptional activator RfaH [Yersinia pestis FV-1]
gi|218930774|ref|YP_002348649.1| transcriptional activator RfaH [Yersinia pestis CO92]
gi|229839454|ref|ZP_04459613.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896688|ref|ZP_04511854.1| DNA-binding transcriptional antiterminator [Yersinia pestis
Pestoides A]
gi|229900018|ref|ZP_04515155.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900535|ref|ZP_04515664.1| DNA-binding transcriptional antiterminator [Yersinia pestis
Nepal516]
gi|270488890|ref|ZP_06205964.1| transcriptional activator RfaH [Yersinia pestis KIM D27]
gi|294505437|ref|YP_003569499.1| transcriptional activator RfaH [Yersinia pestis Z176003]
gi|21957154|gb|AAM84049.1|AE013646_9 transcriptional activator [Yersinia pestis KIM 10]
gi|45437896|gb|AAS63445.1| putative regulatory protein [Yersinia pestis biovar Microtus str.
91001]
gi|108774008|gb|ABG16527.1| regulatory protein [Yersinia pestis Nepal516]
gi|108781344|gb|ABG15402.1| putative regulatory protein [Yersinia pestis Antiqua]
gi|115349385|emb|CAL22357.1| putative regulatory protein [Yersinia pestis CO92]
gi|145212336|gb|ABP41743.1| regulatory protein [Yersinia pestis Pestoides F]
gi|149289477|gb|EDM39555.1| DNA-binding transcriptional antiterminator [Yersinia pestis
CA88-4125]
gi|162354125|gb|ABX88073.1| transcriptional activator RfaH [Yersinia pestis Angola]
gi|165912938|gb|EDR31564.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921795|gb|EDR38992.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165988952|gb|EDR41253.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205286|gb|EDR49766.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960965|gb|EDR56986.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167051307|gb|EDR62715.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054817|gb|EDR64621.1| transcriptional activator RfaH [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682554|gb|EEO78641.1| DNA-binding transcriptional antiterminator [Yersinia pestis
Nepal516]
gi|229686798|gb|EEO78877.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695820|gb|EEO85867.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700331|gb|EEO88364.1| DNA-binding transcriptional antiterminator [Yersinia pestis
Pestoides A]
gi|262363502|gb|ACY60223.1| transcriptional activator RfaH [Yersinia pestis D106004]
gi|262367431|gb|ACY63988.1| transcriptional activator RfaH [Yersinia pestis D182038]
gi|270337394|gb|EFA48171.1| transcriptional activator RfaH [Yersinia pestis KIM D27]
gi|294355896|gb|ADE66237.1| transcriptional activator RfaH [Yersinia pestis Z176003]
gi|320013633|gb|ADV97204.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 162
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ +A E + + P + + +G+++ FP
Sbjct: 2 KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + T+ T F+ G P+ + + I + Q A + V
Sbjct: 53 NYLFAEFDPENIHTTTVSATRGGSHFVRFGTQPAVIPATVIADM--QAHAVDKIIAPEVP 110
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ G+ V + DG FA I D E +R + + + L Q EK
Sbjct: 111 -KPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161
>gi|260174672|ref|ZP_05761084.1| putative transcriptional regulator [Bacteroides sp. D2]
gi|315922935|ref|ZP_07919175.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696810|gb|EFS33645.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 188
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKIGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + VD +S++ V + + G
Sbjct: 134 APLARGEKVRVVKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173
>gi|260170846|ref|ZP_05757258.1| putative transcriptional regulator [Bacteroides sp. D2]
gi|315919178|ref|ZP_07915418.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693053|gb|EFS29888.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 192
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKIVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|83814623|ref|YP_444769.1| putative transcriptional regulator [Salinibacter ruber DSM 13855]
gi|294506613|ref|YP_003570671.1| transcription antitermination protein nusG [Salinibacter ruber M8]
gi|83756017|gb|ABC44130.1| putative transcriptional regulator [Salinibacter ruber DSM 13855]
gi|294342941|emb|CBH23719.1| Transcription antitermination protein nusG [Salinibacter ruber M8]
Length = 229
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + + EKKA + + R E+ +P + + RK F Y
Sbjct: 61 WRVFYTRARAEKKAEQRLEDRR---------IEVLVPKKTEMRQWSDRKKEVTEPLFRNY 111
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + D++ + T ++ + P+ + + + + + + + +
Sbjct: 112 LFARVGEKDRI--RVLRTNGIVRCVHFDGEPAQLREDTAQRLKKIQAVPDRLSTADLRPQ 169
Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
VG V ++DGP G V ++ V + V + VE+ VE+
Sbjct: 170 VGSTVTITDGPERLRGLTGEVLE-HRGRTYVLLRVKAVRQAVKVEVNAKWVEE 221
>gi|224023977|ref|ZP_03642343.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM
18228]
gi|224017199|gb|EEF75211.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM
18228]
Length = 175
Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M WY + V + EKK E +G G++H + P + VV R+ +
Sbjct: 1 MEKENWYAMYVRMHHEKKVAEKLGQ----MGVEHYL-----PVQEVVRQWSDRRKKLQVV 51
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQ-R 116
P + I+A +++ P V G L P+ + D E++ ++ + +
Sbjct: 52 VIPMMIFIRAS-EQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAV 110
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G+++ V GP A +G + +D KS+V V + G VE+ VE
Sbjct: 111 HFINTPLAPGQKIRVIKGPLAGLDGELTEIDG-KSQVMVRIEQLG-YASVEMPVGYVE 166
>gi|298484134|ref|ZP_07002301.1| transcriptional regulator [Bacteroides sp. D22]
gi|299149121|ref|ZP_07042182.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
gi|298269724|gb|EFI11318.1| transcriptional regulator [Bacteroides sp. D22]
gi|298512788|gb|EFI36676.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
Length = 192
Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|304413123|ref|ZP_07394596.1| Transcription antiterminator [Candidatus Regiella insecticola LSR1]
gi|304283966|gb|EFL92359.1| Transcription antiterminator [Candidatus Regiella insecticola LSR1]
Length = 163
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 13/175 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY++ +A E + R G+ P + + +GR+V FP
Sbjct: 2 KAWYLLYCKRAQLLRAQEHLE----RQGV-----VCLTPIVAIKKMWRGRRVTLHEPLFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + TIK + V F+ G P + I+ I + + +V
Sbjct: 53 NYLFTEFNPENIHTTTIKASRGVSHFVRFGLYPVIIPQMVIDDIKSHTIKTISDSTVAVS 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+ V V++G F+ I D E+ R + + I L EK+V
Sbjct: 113 ---GDTVRVTEGIFSGLQAIYTEPDGER-RSMILLNILNSQVSKSLDNRHFEKVV 163
>gi|238750752|ref|ZP_04612251.1| Transcriptional activator rfaH [Yersinia rohdei ATCC 43380]
gi|238711142|gb|EEQ03361.1| Transcriptional activator rfaH [Yersinia rohdei ATCC 43380]
Length = 163
Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+++ +A E + + + P + + +G+++ + FP
Sbjct: 2 KYWHLLYCKRGQLLRAKEHLERQ---------EVKCWTPIVTIEKIVRGKRIATTEALFP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ I TI T V F+ G P+ + I + + + P V
Sbjct: 53 NYLFIAFDPEQIHTTTISATRGVSHFVRFGVQPAVIPAVVIAEMQSHTADKIIDPEVPVA 112
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V +++G F+ I D E +R + + + L Q EK
Sbjct: 113 ---GDVVTITEGIFSGLQAIYTEPDGE-ARSMLLLNMLNSQVLQSLDNRQFEK 161
>gi|160883751|ref|ZP_02064754.1| hypothetical protein BACOVA_01723 [Bacteroides ovatus ATCC 8483]
gi|156110836|gb|EDO12581.1| hypothetical protein BACOVA_01723 [Bacteroides ovatus ATCC 8483]
Length = 192
Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|29347066|ref|NP_810569.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338964|gb|AAO76763.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
Length = 192
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E + G+++ +P ++ + R+
Sbjct: 24 SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQELHQWSDRRKLVTSVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
P V + A +++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD +S++ V + + G
Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-RSKIAVRLNMLG 174
>gi|302813571|ref|XP_002988471.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii]
gi|300143873|gb|EFJ10561.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii]
Length = 311
Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 47/218 (21%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M +WY ++V++N E +++E++ L E+ P SV +G+ + +
Sbjct: 85 MGMQWYTLRVFTNNEAESMEALRSTLEAE-FPDAKFEVWSPIIPTESVVRGKSRFAMKAM 143
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--------------------TGENPSPVTD 100
G++ ++ V+ VY + V F+G P+PV
Sbjct: 144 LRGHIFLRCVLEAPVYRHAMNERSVFCFVGAFPYKMKAGYDTKMMKGGYPDARIPAPVPS 203
Query: 101 SEIEHI-------------------------MNQVEAAVQRPVSSVFFEVGERVCVSDGP 135
+IE + + +V+ VG+ V V G
Sbjct: 204 YQIEALREEAATREREFKLEQQKKKASEDQVLLEVKEVDDLEQRQGDLRVGDMVAVISGA 263
Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ +F G + +V + + +FG T +E+ + +
Sbjct: 264 YQNFQGTILEFLP-AGKVKIVLPVFGTDTEIEVDMDAL 300
>gi|298387614|ref|ZP_06997166.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|298259821|gb|EFI02693.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 192
Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E + G+++ +P ++ R+
Sbjct: 24 SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQEFHQWSDRRKLVTSVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
P V + +++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVDPRERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + +VD KS++ V + + G
Sbjct: 135 APLARGEKVRVIKGPLTGLVGELVHVDG-KSKIAVRLNMLG 174
>gi|255692527|ref|ZP_05416202.1| putative transcriptional regulator [Bacteroides finegoldii DSM
17565]
gi|260621806|gb|EEX44677.1| putative transcriptional regulator [Bacteroides finegoldii DSM
17565]
Length = 190
Score = 74.0 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVAMVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKKVEAVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD K+++ V + + G
Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-KTKIAVRLNLLG 174
>gi|237716030|ref|ZP_04546511.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|237722185|ref|ZP_04552666.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262407644|ref|ZP_06084192.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294808414|ref|ZP_06767167.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|229443677|gb|EEO49468.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229447995|gb|EEO53786.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262354452|gb|EEZ03544.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294444342|gb|EFG13056.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 192
Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKIGIEN-----FVPVQQEIHQWSDRRKMVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVNPKERKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|284037545|ref|YP_003387475.1| NusG antitermination factor [Spirosoma linguale DSM 74]
gi|283816838|gb|ADB38676.1| NusG antitermination factor [Spirosoma linguale DSM 74]
Length = 161
Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 5 WYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ EK + + ++ E+ P R R E FP
Sbjct: 3 WYVLCTKPRKEKFLAKLLAEKQI----------EVYCPLIRRKRRWSDRIKTVEEPLFPC 52
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y + +++ + TP ++ +L P+ V D EI+ I + + F
Sbjct: 53 YCFVNVKESERA--DVFVTPGIVRYLYWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESF 110
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
++V ++ G F G V N + + V +
Sbjct: 111 NPKDKVVINSGSFMGQGGTVVN----QQGIKVLI 140
>gi|29347135|ref|NP_810638.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339034|gb|AAO76832.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
Length = 192
Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E + G+++ +P ++ R+
Sbjct: 24 SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQEFHQWSDRRKLVTSVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
P V + +++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|149277513|ref|ZP_01883654.1| hypothetical protein PBAL39_04978 [Pedobacter sp. BAL39]
gi|149231746|gb|EDM37124.1| hypothetical protein PBAL39_04978 [Pedobacter sp. BAL39]
Length = 170
Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY V S EKKA + + S +P +R + RK E
Sbjct: 9 KKWYPVCTQSRAEKKAYSELTRKNITS---------YLPLQRQMKQWSDRKKWVEEPLIR 59
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y+ + + + T + F+ + + + + +IE + + + ++
Sbjct: 60 SYLFVHISRQQQA--EVLMTSGIARFIYFSGHIASMPEQQIEQLKLLTASPYELEITENN 117
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
GE++ + GP +G V +K + V +
Sbjct: 118 LLEGEKITIKAGPLQGMSGEVVAYRSQK---KLLVRM 151
>gi|313639750|gb|EFS04503.1| transcription antitermination protein NusG [Listeria seeligeri
FSL S4-171]
Length = 47
Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
M WY+V YS E K ++ R+ G+ + + +P E +
Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEEM 46
>gi|29346006|ref|NP_809509.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|253568593|ref|ZP_04846004.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29337900|gb|AAO75703.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|251842666|gb|EES70746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 192
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVSEYLNK----VGIEN-----FVPVQKEIHQWSDRRKLVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A +++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHADPKERMEVLNFTTVSRYMVMRGESSPAVIPDDQMARFRFMLDYSDETVCMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVQVIKGPLQGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|309379174|emb|CBX22305.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 47
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 36/46 (78%)
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 1 MNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 46
>gi|298388205|ref|ZP_06997737.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|298259035|gb|EFI01927.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 192
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E + G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVSEYLNK----VGIEN-----FVPVQKEIHQWSDRRKLVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A +++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHADPKERMEVLNFTTVSRYMVMRGESSPAVIPDDQMARFRFMLDYSDETICMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEKVQVIKGPLQGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|24212747|ref|NP_710228.1| transcription antiterminator [Leptospira interrogans serovar Lai
str. 56601]
gi|45655955|ref|YP_000041.1| transcription activator or transcription antitermination factor
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|24193386|gb|AAN47246.1| transcription antiterminator [Leptospira interrogans serovar Lai
str. 56601]
gi|45599188|gb|AAS68678.1| transcription activator or transcription antitermination factor
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 179
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ EKK R E +P R E +P Y
Sbjct: 10 WYVLYTNPRSEKKLKRLFQERK---------IECFLPLISKKKKWSDRWKVIEEPMYPSY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--F 122
+ +K I P F+ P + + +++ + +E + +
Sbjct: 61 IFVKISFFKDRVR-ILQLPGAHHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEK 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
G++V + +GPFA F + E+ V V+ VT V L
Sbjct: 120 LLPGKKVLIQEGPFAGFKAEIIQRKNEEQIV-VKFPGMNLVTSVTLDI 166
>gi|83816408|ref|YP_446838.1| hypothetical protein SRU_2746 [Salinibacter ruber DSM 13855]
gi|83757802|gb|ABC45915.1| hypothetical protein SRU_2746 [Salinibacter ruber DSM 13855]
Length = 280
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + + EKK + R ++ +P + V R F Y
Sbjct: 116 WRVFYTRARAEKKCETRLDERR---------IDVMVPKKTEVRQWSDRTKEITEPLFRNY 166
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + D++ + T ++ + P+ + + ++ + + + +
Sbjct: 167 LFARVDEKDRL--RVLRTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPA 224
Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VGE V ++ GP G V + + V+V + +E+A + V+
Sbjct: 225 VGETVTITGGPERLQGLTGKVLQHRGQTYLL-VQVRAVRQAVKIEVAADWVQ 275
>gi|290953568|ref|ZP_06558189.1| transcription antitermination protein nusG [Francisella
tularensis subsp. holarctica URFT1]
gi|295313122|ref|ZP_06803811.1| transcription antitermination protein nusG [Francisella
tularensis subsp. holarctica URFT1]
Length = 57
Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER+
Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERK 57
>gi|302794226|ref|XP_002978877.1| hypothetical protein SELMODRAFT_418636 [Selaginella moellendorffii]
gi|300153195|gb|EFJ19834.1| hypothetical protein SELMODRAFT_418636 [Selaginella moellendorffii]
Length = 332
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 63/232 (27%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT--------------IPSERVV 46
M +WY ++V++N E +++E++ L D + IP+E VV
Sbjct: 85 MGMQWYTLRVFTNNEAESMEALRSTLEAEFPDAKFEGVVNGFLLPRCKVWSPIIPTESVV 144
Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG---------------- 90
+G+ + + G++ ++ V+ VY + + V F+G
Sbjct: 145 ---RGKSRFAMKAMLRGHIFLRCVLEAPVYRHVMNERSVFCFVGAFPYKMKAGYDTKMMK 201
Query: 91 ----TGENPSPVTDSEIEHI-------------------------MNQVEAAVQRPVSSV 121
P+PV +IE + + +V+
Sbjct: 202 GGYPDAHIPAPVPSYQIEALREEAATREREFKLEQQKKKASEDQVLLEVKEVDDLEQRQG 261
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
VG+ V V G + +F G + +V + + +FG T +E+ + +
Sbjct: 262 HLRVGDMVAVISGAYQNFQGTILEFLP-AGKVKIVLPVFGTDTEIEVDMDAL 312
>gi|12044904|ref|NP_072714.1| transcription antitermination protein NusG, putative [Mycoplasma
genitalium G37]
gi|255660180|ref|ZP_05405589.1| transcription antitermination protein NusG, putative [Mycoplasma
genitalium G37]
gi|1351469|sp|P47300|Y054_MYCGE RecName: Full=Uncharacterized protein MG054
gi|1045727|gb|AAC71270.1| transcription antitermination protein NusG, putative [Mycoplasma
genitalium G37]
gi|166079031|gb|ABY79649.1| transcription antitermination protein NusG, putative [synthetic
Mycoplasma genitalium JCVI-1.0]
Length = 316
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 62/154 (40%), Gaps = 32/154 (20%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-----RVVSVRKGRK-- 53
+TP+WY+ V S ++ V+++ ++ G +H + ++ + E V S++ G+
Sbjct: 6 LTPKWYVAPV-SIKDEAVVKNLKAKIQALGFNHEIVDVKVLKEREVHEEVYSLKSGKLPR 64
Query: 54 ---------------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
SE+ Y+ IK + ++ + +++ P + G +G+
Sbjct: 65 SLKNTTFNKWFVLDDYRYLRVKISEKNLLGRYIYIKMIYSEDAWRIVRNFPGITGIVGSS 124
Query: 93 EN---PSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
P P+ + + ++ ++ P +
Sbjct: 125 GRGALPIPLDEKDANNLEQMLKGISINPSKRIML 158
>gi|295106883|emb|CBL04426.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
Length = 172
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 6/168 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++QV E+ E R+S L+ E S +++ +KG FPGY
Sbjct: 7 WHVLQVAPGQERSMAE----RVSSLAGPDLLRECFPLSYQLLKKQKGTWRLVTEVMFPGY 62
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V + D V +K + LG G+ +T E + A +S E
Sbjct: 63 VFLSTGDIDAVRERLKLSTSFARLLGAGDAIFSLTSEEAAFVSEFGGADHVVGMSQGVIE 122
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV-TPVELAYN 171
G V V GP G+V+ +D K +++V + + V L
Sbjct: 123 DGRTV-VRSGPLRGREGLVRKIDRHKRVAYLDVGLLDQARVRVGLEIT 169
>gi|13507806|ref|NP_109755.1| transcription antitermination factor [Mycoplasma pneumoniae M129]
gi|2499341|sp|P75049|Y067_MYCPN RecName: Full=Protein MG054 homolog
gi|1673742|gb|AAB95735.1| transcription antitermination factor [Mycoplasma pneumoniae M129]
Length = 320
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 32/150 (21%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-----RVVSVRKGRK---- 53
P+WY+ V E V ++ ++ G D+ + ++ + E V S++ G+
Sbjct: 8 PQWYVAPVSVKDEA-VVRNLKAKVKALGFDNEILDVRVLKEREVIEEVFSLKSGKLPRSL 66
Query: 54 -------------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
SE+ Y+ IK + ++ + I++ P + G +G+
Sbjct: 67 KNTAFTKWFVLDEDRYLKVKISEKNLLGRYIYIKMIYSEDAWRIIRNFPGITGIVGSSGR 126
Query: 95 ---PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P+P+ ++ +++ ++ P V
Sbjct: 127 GALPTPLDQADADNLEQMLKGISVNPKKRV 156
>gi|298387543|ref|ZP_06997095.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|298259750|gb|EFI02622.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 192
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ + P ++ + R+
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLDKMGIENFI-----PVQQELHQWSDRRKMITSVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + +P+ + D ++ ++ + + ++S
Sbjct: 75 PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSAESVSMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + NVD KS++ V + + G
Sbjct: 135 SPLARGEQVRVIKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174
>gi|301633679|gb|ADK87233.1| NusG family protein [Mycoplasma pneumoniae FH]
Length = 320
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 32/190 (16%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-----RVVSVRKGRK---- 53
P+WY+ V E V ++ ++ G D+ + ++ + E V S++ G+
Sbjct: 8 PQWYVAPVSVKDEA-VVRNLKAKVKALGFDNEILDVRVLKEREVIEEVFSLKSGKLPRSL 66
Query: 54 -------------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
SE+ Y+ IK + ++ + I++ P + G +G+
Sbjct: 67 KNTAFTKWFVLDEDRYLKVKISEKNLLGRYIYIKMIYSEDAWRIIRNFPGITGIVGSSGR 126
Query: 95 ---PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
P+P+ ++ +++ ++ P V V + F + + K
Sbjct: 127 GALPTPLDQADADNLEQMLKGISVNPKKRVLVTNTAIVEMDADKFDEKFQYILKHKQVKP 186
Query: 152 RVHVEVVIFG 161
+V G
Sbjct: 187 EAIAQVNESG 196
>gi|157704379|gb|ABV68878.1| NusG [Candidatus Liberibacter asiaticus]
Length = 49
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 1 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 49
>gi|150004924|ref|YP_001299668.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|254884346|ref|ZP_05257056.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294775805|ref|ZP_06741307.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|319642114|ref|ZP_07996778.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
gi|149933348|gb|ABR40046.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|254837139|gb|EET17448.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294450391|gb|EFG18889.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|317386250|gb|EFV67165.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
Length = 216
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY+ V + EK + + RL E+ +P ++ +S+R G++ +R F
Sbjct: 27 KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 86
Query: 62 PGYVLIKAVMTDKVYHTI------KDTPKVIGFLGTGENPSP-VTDSEIEHIMNQVEAAV 114
P V I+ + + + + + G P + D ++ +M V A
Sbjct: 87 PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 146
Query: 115 QRP-VSSVFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFG 161
+ + S +G+RV V+ G G + + +D S + V++ I G
Sbjct: 147 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILG 194
>gi|153806452|ref|ZP_01959120.1| hypothetical protein BACCAC_00716 [Bacteroides caccae ATCC 43185]
gi|149131129|gb|EDM22335.1| hypothetical protein BACCAC_00716 [Bacteroides caccae ATCC 43185]
Length = 190
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL++ G+++ +P ++ + R+ E
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLNKMGIEN-----FVPVQQELHQWSDRRKMVESVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
P V + ++ T + +P+ + D ++ ++ + ++S
Sbjct: 75 PMMVFVHVDAKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSKYVISMNS 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP G + VD KS++ V + + G
Sbjct: 135 APLARGEKVRVIKGPLTGLVGELVTVDG-KSKIAVRLNMLG 174
>gi|237710185|ref|ZP_04540666.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237727683|ref|ZP_04558164.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265750988|ref|ZP_06087051.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229434539|gb|EEO44616.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229455647|gb|EEO61368.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263237884|gb|EEZ23334.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 216
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY+ V + EK + + RL E+ +P ++ +S+R G++ +R F
Sbjct: 27 KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 86
Query: 62 PGYVLIKAVMTDKVYHTI------KDTPKVIGFLGTGENPSP-VTDSEIEHIMNQVEAAV 114
P V I+ + + + + + G P + D ++ +M V A
Sbjct: 87 PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 146
Query: 115 QRP-VSSVFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFG 161
+ + S +G+RV V+ G G + + +D S + V++ I G
Sbjct: 147 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILG 194
>gi|212694317|ref|ZP_03302445.1| hypothetical protein BACDOR_03843 [Bacteroides dorei DSM 17855]
gi|212662818|gb|EEB23392.1| hypothetical protein BACDOR_03843 [Bacteroides dorei DSM 17855]
Length = 226
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 9/168 (5%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY+ V + EK + + RL E+ +P ++ +S+R G++ +R F
Sbjct: 37 KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 96
Query: 62 PGYVLIKAVMTDKVYHTI------KDTPKVIGFLGTGENPSP-VTDSEIEHIMNQVEAAV 114
P V I+ + + + + + G P + D ++ +M V A
Sbjct: 97 PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 156
Query: 115 QRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + S +G+RV V+ G G + + + + V++ I G
Sbjct: 157 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTSLVVKIDILG 204
>gi|220926439|ref|YP_002501741.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060]
gi|219951046|gb|ACL61438.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060]
Length = 171
Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 16/176 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V+ + +A++++ + + + +P V R+GR + F
Sbjct: 7 WHLVRTAPSMMGRALDTLK--------EQGIPTV-VPRTVAVGHREGRPYLRRAQMFHRT 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN----PSPVTDSEIEHIMNQVEAAVQRPVSS 120
V + + + V L P ++ ++ + + +
Sbjct: 58 VFVGVEGAADLDGKVPTARGVTRVLRNPTRADMAPMTISGPDMAAFVAAI--GITEKRKP 115
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+RV V GPFASF +V+ V R+ V V IFGR TP E + V I
Sbjct: 116 AGIAAGDRVVVQAGPFASFPAMVEEVLP-NERLKVAVQIFGRATPFECGHADVRPI 170
>gi|160882250|ref|ZP_02063253.1| hypothetical protein BACOVA_00196 [Bacteroides ovatus ATCC 8483]
gi|237715183|ref|ZP_04545664.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408864|ref|ZP_06085409.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294810721|ref|ZP_06769369.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|156112339|gb|EDO14084.1| hypothetical protein BACOVA_00196 [Bacteroides ovatus ATCC 8483]
gi|229445016|gb|EEO50807.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262353075|gb|EEZ02170.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294442054|gb|EFG10873.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 198
Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLNMLG 174
>gi|294809330|ref|ZP_06768040.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|294443422|gb|EFG12179.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 198
Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLNMLG 174
>gi|307694396|ref|ZP_07636633.1| NusG antitermination factor [Ruminococcaceae bacterium D16]
Length = 165
Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 14/164 (8%)
Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
QV + E +++ G+ +P E G PGYV +
Sbjct: 2 QVTTGQETGVRDAL----QTLGI-----RAAVPREERAIRSGGGWTTKVYTLLPGYVFLA 52
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+ + Y+ +K P V+ FLG +PS +T E+E + S V
Sbjct: 53 LEYSAENYYRVKAIPHVLRFLGPNGLSPSYLTHLEVEWLRLLDNGGEVLKPSRVETLPEG 112
Query: 128 RVCVSDGPFASFNGIVKNVDEEK--SRVHVEVVIFGRVTPVELA 169
V + +G F V +D +K R VE+ + G + + L+
Sbjct: 113 GVRIVEGVLRHFP--VSRIDLDKRARRAKVEISLCGELKTLTLS 154
>gi|260175490|ref|ZP_05761902.1| putative transcriptional regulator [Bacteroides sp. D2]
gi|315923722|ref|ZP_07919962.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697597|gb|EFS34432.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 186
Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLNMLG 174
>gi|296447007|ref|ZP_06888941.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
gi|296255450|gb|EFH02543.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
Length = 210
Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKG---RKVNSERRF 60
WY+++ Y + + I P +++ + +R+G +
Sbjct: 3 WYVIECYPGQDFDVCRKLAQ-------ADY--NIWRPMKKITTTLREGPMRGRRCRSVPR 53
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV 118
F Y+ + +T I V GFL P+ V D + +M
Sbjct: 54 FGRYLFLDCELTPGRRFAISTETGVRGFLKRAGVDEPAIVPDEWMNFLMF---GKAIEDR 110
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ F G RV V+ GP G+V++VD+ V + FG
Sbjct: 111 RGIVFAPGTRVTVNAGPLRGREGVVRSVDD--GTAKVILDAFG 151
>gi|29348295|ref|NP_811798.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|253569339|ref|ZP_04846749.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29340198|gb|AAO77992.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841358|gb|EES69439.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 168
Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W +V V SN EKK E + L E +P + R +R P
Sbjct: 7 WLVVCVQSNREKKTYERL---------SALGFESFLPLQEETRRWSDRSKKVQRVVIPMV 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
V + ++++ ++ P V F L P+ + D+++E ++ + + S
Sbjct: 58 VFARIAPSERI--SVLRLPSVSRFMVLRGESAPAIIPDAQMERFRFMLDYSEEAVEMCSE 115
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE+V V GP G + +D KS+V V + + G VE+ VE+I
Sbjct: 116 RIQPGEQVKVIKGPLTGLTGELITMDG-KSKVAVRINMLG-AAMVEVPVGFVERI 168
>gi|312113215|ref|YP_004010811.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
gi|311218344|gb|ADP69712.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
Length = 172
Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 13/167 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK-VNSERRFFP 62
+W ++ + + E AVE++ P V VR R+ ++ R FP
Sbjct: 11 KWVVLTTHPHRENFAVENLAR-------QD--FTAYCPM-TVKHVRHARRAYDAPRPLFP 60
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++ + I T V L G++P+ + IE + + E
Sbjct: 61 GYVFVEHQSAFQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAR-EMDGVISKPEAP 119
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G+ V +S GPF G + E+ RV + + + + T V++
Sbjct: 120 LKAGQTVTISGGPFDGLVGQILEF-RERDRVLLLLDLLNQQTRVQVE 165
>gi|89514493|gb|ABD75121.1| transcription antiterminator NusG [Sinorhizobium saheli]
Length = 129
Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
Query: 50 KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
+ + +F Y+ + + + + I T V + + P PV +E ++
Sbjct: 4 RAQHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSEHAPLPVPHGVVESLLAA 63
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ E G+++ V++GPF G + V V + + I R P+ +
Sbjct: 64 TDD-EGFLHPKELLEPGQKIRVTNGPFTDQLGTLDYVGR-SGAVRILIDIMNRAVPIYID 121
Query: 170 YN 171
+
Sbjct: 122 RD 123
>gi|255007890|ref|ZP_05280016.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
Length = 172
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V +N E+K + L + + +P + V R+G+++ ER P
Sbjct: 8 KHWYVVLTRTNSERKVRDYFQ-------LQEV--DTFLPVQNRVIEREGKRIERERLLLP 58
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
V + + + ++ T V FL + P+ + D+++ ++ + + + +
Sbjct: 59 RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 116
Query: 121 VF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G RV V+ G G + + K + V + +FG V + + V K
Sbjct: 117 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFG-SAMVTIPASYVRK 170
>gi|313145599|ref|ZP_07807792.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134366|gb|EFR51726.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 181
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V +N E+K + L + + +P + V R+G+++ ER P
Sbjct: 17 KHWYVVLTRTNSERKVRDYFQ-------LQEV--DTFLPVQNRVIEREGKRIERERLLLP 67
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
V + + + ++ T V FL + P+ + D+++ ++ + + + +
Sbjct: 68 RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 125
Query: 121 VF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G RV V+ G G + + K + V + +FG V + + V K
Sbjct: 126 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFG-SAMVTIPASYVRK 179
>gi|299149025|ref|ZP_07042087.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
gi|298513786|gb|EFI37673.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
Length = 198
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDGQMARFRFMLDYSEEAVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLNMLG 174
>gi|312969413|ref|ZP_07783615.1| transcriptional activator RfaH [Escherichia coli 2362-75]
gi|312285960|gb|EFR13878.1| transcriptional activator RfaH [Escherichia coli 2362-75]
Length = 137
Score = 70.5 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENP 95
P + + +G++ FP Y+ ++ +V H TI T V F+ G +P
Sbjct: 3 CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP--EVIHTTTINATRGVSHFVRFGASP 60
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ V + I + V S + G++V +++G F F I D E +R +
Sbjct: 61 AIVPSAVIHQL--SVYKPKDIVDPSTPY-PGDKVIITEGAFEGFQAIFTEPDGE-ARSML 116
Query: 156 EVVIFGRV 163
+ + +
Sbjct: 117 LLNLINKE 124
>gi|153009640|ref|YP_001370855.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
gi|151561528|gb|ABS15026.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
Length = 217
Score = 70.5 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 13/176 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKV-NSERRFFP 62
W ++QV S E E++G E+ +P + +R+ GR++ ++
Sbjct: 51 WLVLQVMSGRELSVREALGKEN---------IEVLVPMKMGPKIRRQGREIPAKKQPVMN 101
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYVL + +++++ + V+ LG E P V+ ++ + E
Sbjct: 102 GYVLARCMISNECLAGLLSFENVVSILGGYETPFLVSAEKVFVFRAKAEDGQYDYEHFHR 161
Query: 123 FEVGERV-CVSDGPFASFNGI-VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+G + V+DGPFA V + V +EV I GR + + +E +
Sbjct: 162 KFIGVKWARVADGPFAGCRAELVSGGTKGNGLVVIEVSIMGRPVAMTVPIAILEPL 217
>gi|309784559|ref|ZP_07679197.1| transcriptional activator RfaH [Shigella dysenteriae 1617]
gi|308927665|gb|EFP73134.1| transcriptional activator RfaH [Shigella dysenteriae 1617]
Length = 137
Score = 70.5 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENP 95
P + + +G++ FP Y+ ++ +V H TI T V F+ G +P
Sbjct: 3 CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP--EVIHTTTINATRGVSHFVRFGASP 60
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ V + I + V + + G++V +++G F F I D E +R +
Sbjct: 61 AIVPSAVIHQL--SVYKPKDIVDPATPY-PGDKVIITEGAFEGFQAIFTEPDGE-ARSML 116
Query: 156 EVVIFGRV 163
+ + +
Sbjct: 117 LLNLINKE 124
>gi|257458183|ref|ZP_05623337.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
gi|257444477|gb|EEV19566.1| transcription antitermination protein NusG [Treponema vincentii
ATCC 35580]
Length = 55
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
FE G++V + +GPF +F G V+ V E++++ V V IFGR TPVE+ QVE I
Sbjct: 2 FEPGQQVKIIEGPFDTFTGTVEEVMAERNKLRVMVAIFGRTTPVEVDMLQVELI 55
>gi|60680552|ref|YP_210696.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|60491986|emb|CAH06747.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|301162089|emb|CBW21633.1| putative transcriptional regulator [Bacteroides fragilis 638R]
Length = 172
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+V +N E+K + L + + +P + V R+G+++ ER P
Sbjct: 8 KHWYVVLTRTNSERKVRDYFQ-------LQEV--DTFLPVQNRVIEREGKRIERERLLLP 58
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
V + + + ++ T V FL + P+ + D+++ ++ + + + +
Sbjct: 59 RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 116
Query: 121 VF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G RV V+ G G + + K + V + +FG V + + V K
Sbjct: 117 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFG-SAMVTIPASYVRK 170
>gi|284006544|emb|CBA71805.1| transcriptional activator [Arsenophonus nasoniae]
Length = 126
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 48 VRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
+ +G+++ FP Y+ +K + TI+ T V F+ G P V D+ I+
Sbjct: 1 MVRGKRITVTEALFPNYLFVKFDPEEIHTTTIRSTRGVSHFIRFGLYPVIVPDNIIDEFK 60
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ A+ V++ G+ V +++G F I D E V +
Sbjct: 61 S---ASKPEIVAAKTPVSGDTVIITEGIFEGLKAIFSEPDGENRSVILL 106
>gi|237713545|ref|ZP_04544026.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407330|ref|ZP_06083878.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|229446527|gb|EEO52318.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354138|gb|EEZ03230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 198
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDETVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLNMLG 174
>gi|294508771|ref|YP_003572830.1| transcriptional regulator NusG/RfaH family [Salinibacter ruber M8]
gi|294345100|emb|CBH25878.1| putative transcriptional regulator NusG/RfaH family [Salinibacter
ruber M8]
Length = 175
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + + EKK + R ++ +P + V R F Y
Sbjct: 11 WRVFYTRARAEKKCETRLDERR---------IDVMVPKKTEVRQWSDRTKEVTEPLFRNY 61
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+ + D++ + T ++ + P+ + + ++ + + + +
Sbjct: 62 LFARVDEKDRL--RVLRTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPA 119
Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
VGE V ++ GP G V + + V+V + +E+A + V+
Sbjct: 120 VGETVTITGGPERLQGLTGKVLQHRGQTYLL-VQVRAVRQAVKIEVAADWVQ 170
>gi|255008491|ref|ZP_05280617.1| putative LPS-related regulatory protein [Bacteroides fragilis
3_1_12]
gi|313146220|ref|ZP_07808413.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134987|gb|EFR52347.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 177
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 12/150 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E + G+D+ + P + V+ + RK PG
Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGIDNYL-----PLQPVIRMWNNRKKKIFIPVVPGC 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-VFF 123
+ + + + I V L + + ++E +E + + + F
Sbjct: 66 LFVYI--SSEEIAQITSIHGVAFLLKEKGQYVSIPEVQMETFRTMIERSHELVEFAPTDF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
G V V G + +
Sbjct: 124 VPGSTVQVIRGQLQGLVAELVECQGNNKLL 153
>gi|126662220|ref|ZP_01733219.1| putative transcriptional regulator [Flavobacteria bacterium BAL38]
gi|126625599|gb|EAZ96288.1| putative transcriptional regulator [Flavobacteria bacterium BAL38]
Length = 154
Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 20/154 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + E+K + + L P RK P Y
Sbjct: 3 WYALYTKPRNEQKVAQKL---------QALGIIAYCPLVLSSKQWSDRKKKVLVPLLPSY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++ ++ + V+ ++ P+ + +EIE + Q+++++ V FE
Sbjct: 54 VFVQIE--EQNRKDVFQVGGVVQYVFWLGKPAIIKPNEIEALKQQLDSSI----PVVHFE 107
Query: 125 V-----GERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ E + +++G F + IV + K R+
Sbjct: 108 MTTWRSNETIQITEGVFKGQDAIVDKISTNKVRL 141
>gi|168333282|ref|ZP_02691566.1| transcription antitermination protein NusG [Epulopiscium sp.
'N.t. morphotype B']
Length = 55
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
+WY+V YS E K +I + + L+ ++ IP + G
Sbjct: 3 EAKWYVVHTYSGYENKVKVNIEKAIKNRNMQELIQKVEIPMHNEEEEKNG 52
>gi|149276430|ref|ZP_01882574.1| Transcription antiterminator [Pedobacter sp. BAL39]
gi|149232950|gb|EDM38325.1| Transcription antiterminator [Pedobacter sp. BAL39]
Length = 173
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 12/153 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ V EKK + + + P +V S R E F
Sbjct: 13 KWFAVYTRPRWEKKVEQQLKMQGIT---------CYCPLRKVQSQWADRIKVVELPLFSS 63
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-F 122
YV + +++ ++ V+ F+ + + + S IE I + +E + S+
Sbjct: 64 YVFVCIHPREELN--VRLNIGVVNFVYYMGHLAEIRHSVIEEIKSNLEKYPDAEIVSMRD 121
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
EVG+RV + G G V V + + +
Sbjct: 122 LEVGDRVRIKAGLMGEQEGKVLQVRGKNVLLVI 154
>gi|91217294|ref|ZP_01254255.1| transcription activator or transcription antitermination factor
[Psychroflexus torquis ATCC 700755]
gi|91184637|gb|EAS71019.1| transcription activator or transcription antitermination factor
[Psychroflexus torquis ATCC 700755]
Length = 159
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+++ EKK + +L+RSG++ P+ V V RK E P
Sbjct: 7 KKWFVLYTKPRGEKK----LSEQLNRSGIEAY-----CPTRTEVRVWSDRKKKVEMPVLP 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
+L+K + ++P I +L PS VT E++ + + + +
Sbjct: 58 SMLLVKIENKQRAKAL--ESPLAIRYLFWNGKPSVVTQVEVDTLRSILGDSKFESHELDQ 115
Query: 123 FEVGERVCVSDGPFASFNGIVKNVD 147
G+++ +++ F + G V+ V+
Sbjct: 116 LRPGQKLDMTELGFENIEGTVQYVN 140
>gi|153806198|ref|ZP_01958866.1| hypothetical protein BACCAC_00453 [Bacteroides caccae ATCC 43185]
gi|149130875|gb|EDM22081.1| hypothetical protein BACCAC_00453 [Bacteroides caccae ATCC 43185]
Length = 197
Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKLVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVTPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V KS++ V + + G
Sbjct: 135 SPLARGEKVRVIKGPLSGLVGELVTVGS-KSKIAVRLNMLG 174
>gi|153808243|ref|ZP_01960911.1| hypothetical protein BACCAC_02531 [Bacteroides caccae ATCC 43185]
gi|149129146|gb|EDM20362.1| hypothetical protein BACCAC_02531 [Bacteroides caccae ATCC 43185]
Length = 197
Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKLVDTVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + +++ T + P+ + D ++ ++ + + ++
Sbjct: 75 PMMVFVHVTPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMND 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP + G + V +S++ V + + G
Sbjct: 135 SPLARGEKVRVIKGPLSGLVGELVTVGG-RSKIAVRLNMLG 174
>gi|253563030|ref|ZP_04840487.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251946806|gb|EES87088.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 176
Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E + G+++ + P + VV + RK PG
Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYL-----PLQPVVRLWNNRKKKIFIPVVPGC 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-VFF 123
+ + ++++ H + V L + + ++E +E + + + F
Sbjct: 66 LFVHIS-SEEIAH-VAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
G V V G + +++ + V G
Sbjct: 124 VPGTVVRVISGQLQGLEAELVECQG-NNKLLLRVEGLG 160
>gi|265763089|ref|ZP_06091657.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255697|gb|EEZ27043.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 176
Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E + G+++ + P + VV + RK PG
Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYL-----PLQPVVRLWNNRKKKIFIPVVPGC 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-VFF 123
+ + ++++ H + V L + + ++E +E + + + F
Sbjct: 66 LFVHIS-SEEIAH-VAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
G V V G + +++ + V G
Sbjct: 124 VPGTIVRVISGQLQGLEAELVECQG-NNKLLLRVEGLG 160
>gi|163752772|ref|ZP_02159896.1| NusG antitermination factor [Kordia algicida OT-1]
gi|161326504|gb|EDP97829.1| NusG antitermination factor [Kordia algicida OT-1]
Length = 170
Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 13/175 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ V S EKK S+ + + +P + V RK FP Y
Sbjct: 7 WHVLYVKSRWEKKVHNSLEN---------ISIKSFLPKTKTVQQWSDRKKTILTPLFPSY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122
V + + +H ++ G+ + VT+ EI I V+ + ++ F
Sbjct: 58 VFVYIE-SPLDFHKALSVDGACCYIRFGKEYARVTEKEINQIKLLVDSKEIEEIELNPTF 116
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
++GE + GP + + + E +++ V + + + N +K V
Sbjct: 117 PKIGEMKKIEQGPLSGLDCEIIE-AENYNKIIVRISSLRQNILATIPLNSFKKAV 170
>gi|60681203|ref|YP_211347.1| putative LPS-related regulatory protein [Bacteroides fragilis NCTC
9343]
gi|60492637|emb|CAH07409.1| putative LPS-related regulatory protein [Bacteroides fragilis NCTC
9343]
Length = 176
Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E + G+++ + P + VV + RK PG
Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYL-----PLQPVVRLWNNRKKKIFIPVVPGC 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-VFF 123
+ + ++++ H + V L + + ++E +E + + + F
Sbjct: 66 LFVHIS-SEEIAH-VAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
G V V G + +++ + V G
Sbjct: 124 VPGTVVRVISGQLQGLEAELVECQG-NNKLLLRVEGLG 160
>gi|260773239|ref|ZP_05882155.1| transcriptional activator RfaH [Vibrio metschnikovii CIP 69.14]
gi|260612378|gb|EEX37581.1| transcriptional activator RfaH [Vibrio metschnikovii CIP 69.14]
Length = 137
Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 44 RVVSVRKGRKVNSERRFFPGYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
V + +G++ + FP Y+ + + T++ T V+ F+ G P ++++
Sbjct: 2 EVEKILRGKRKKVQEPVFPSYIFVCFDYKQGPTFTTVRSTRGVVDFVRFGPEPKELSEAL 61
Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
I + ++E + EVG+ + V G F + + D E +R + V + +
Sbjct: 62 ITE-LKKLEYLPDHEQLGLP-EVGQEIEVKGGQFCGIRALYQEPDGE-ARSMMLVQMINQ 118
Query: 163 VTPVELA 169
+ +
Sbjct: 119 PVVISID 125
>gi|238790596|ref|ZP_04634362.1| Transcriptional activator rfaH [Yersinia frederiksenii ATCC 33641]
gi|238721325|gb|EEQ12999.1| Transcriptional activator rfaH [Yersinia frederiksenii ATCC 33641]
Length = 130
Score = 67.8 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 44 RVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI 103
+ + +G++ + FP Y+ ++ + TI T V F+ G P+ + I
Sbjct: 2 TIEKIVRGKRAETTEALFPNYLFVEFDPENIHTTTISATRGVSHFVRFGVQPAVIPALVI 61
Query: 104 EHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ + + P + G+ V +++G F+ I D E +R + + +
Sbjct: 62 AEMQSHTADKIIAPEVPI---PGDVVTITEGIFSGLQAIYTEPDGE-ARSMLLLNMLNSQ 117
Query: 164 TPVELAYNQVEK 175
L Q EK
Sbjct: 118 VLQSLDNRQFEK 129
>gi|261886300|ref|ZP_06010339.1| transcription antitermination protein NusG [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 50
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
V+ G FA+FNG V+ D ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 4 VTKGRFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 50
>gi|257791628|ref|YP_003182234.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
gi|257475525|gb|ACV55845.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
Length = 173
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 6/170 (3%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y++QV E+ E R+ LV + S ++ +G FPGY+
Sbjct: 9 YVLQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLLTETMFPGYL 64
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+ + + TIK + LG + E + + + S +
Sbjct: 65 FVASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDN 124
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G + +GP +K +D K ++++ + + V + V K
Sbjct: 125 GRTIID-EGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 172
>gi|301162692|emb|CBW22239.1| putative LPS-related regulatory protein [Bacteroides fragilis 638R]
Length = 176
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 13/154 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E + G+++ + P + VV + RK PG
Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYL-----PLQPVVRLWNNRKKKIFIPVVPGC 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-VFF 123
+ + ++++ H + V L + + ++E +E + + + F
Sbjct: 66 LFVHIS-SEEIAH-VAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123
Query: 124 EVGERVCVSDGPFASFNGI-VKNVDEEKSRVHVE 156
G V V G V K + VE
Sbjct: 124 VPGTVVRVISGQLQGLEAELVDCQGNNKLLLRVE 157
>gi|229525600|ref|ZP_04415005.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426]
gi|229339181|gb|EEO04198.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426]
Length = 106
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ + ++ L++ E P V + +G++ + FP
Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI 103
Y+ ++ + T++ T V+ F+ G +P + +
Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLV 94
>gi|53712992|ref|YP_098984.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
gi|52215857|dbj|BAD48450.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
Length = 176
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 13/154 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V EKK E + G+++ + P + VV + RK PG
Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYL-----PLQPVVRLWNNRKKKIFIPVVPGC 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-VFF 123
+ + ++++ H + V L + + ++E +E + + + F
Sbjct: 66 LFVHIS-SEEIAH-VAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123
Query: 124 EVGERVCVSDGPFASFNGI-VKNVDEEKSRVHVE 156
G V V G V K + VE
Sbjct: 124 VPGTIVRVISGQLQGLEAELVDCQGNNKLLLRVE 157
>gi|300021678|ref|YP_003754289.1| hypothetical protein Hden_0141 [Hyphomicrobium denitrificans ATCC
51888]
gi|300023083|ref|YP_003755694.1| hypothetical protein Hden_1561 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523499|gb|ADJ21968.1| hypothetical protein Hden_0141 [Hyphomicrobium denitrificans ATCC
51888]
gi|299524904|gb|ADJ23373.1| hypothetical protein Hden_1561 [Hyphomicrobium denitrificans ATCC
51888]
Length = 184
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 30/193 (15%)
Query: 1 MTPRWYIVQVYSNCE----KKAVESIGGR---LSRSGLDHLVTEITIPSERVVS--VRKG 51
MT WY ++ E + E+ R L + G D ++ P+E ++KG
Sbjct: 1 MT--WYAIRTNPQREFLLAGRYDENGEWRPGVLEKKGYD----QVFCPTETKFRKTIKKG 54
Query: 52 RKVNSER--RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIE 104
R+V+ F GY+ + + + + + +G + P+P++D E+
Sbjct: 55 RRVSIPVLYPMFCGYIFVGGRFS---WLELMAENYITAAVGFPDEFGRRRPAPISDYEMA 111
Query: 105 HIMNQVEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ ++ + SV F VGE ++ GPFA + + K+RV + +
Sbjct: 112 K-LREMSGGLIPHRRSVNTHRAFRVGEMAAIAAGPFAHQVAQIAGLHGTKARVFLNLFNG 170
Query: 161 GRVTPVELAYNQV 173
R V+L V
Sbjct: 171 TREVEVDLDMLDV 183
>gi|317487904|ref|ZP_07946496.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
gi|316913030|gb|EFV34547.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
Length = 171
Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y++QV E+ E R+ LV + S R++ +G FPGY+
Sbjct: 7 YVLQVVPGRERAMAE----RVKALAGPELVRDCFALSYRILKKNQGVWRLLTETMFPGYL 62
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+ + + TIK + LG + E + + + S +
Sbjct: 63 FVASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDN 122
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G + +GP +K +D K ++++ + + V + V K
Sbjct: 123 GRTIID-EGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 170
>gi|283797664|ref|ZP_06346817.1| putative transcription termination factor NusG [Clostridium sp.
M62/1]
gi|291074670|gb|EFE12034.1| putative transcription termination factor NusG [Clostridium sp.
M62/1]
Length = 176
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E E + G + R+ L ++ GR FP Y
Sbjct: 2 WYVIQTTTGKE----EELAGIVRRNVSHALYGSCFSMKRELLKRLGGRWTAVTETMFPSY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIE--HIMNQVEAAVQRP-VSS 120
V ++ +++++ +K P+ LG E P+ E +I+ + E +++
Sbjct: 58 VFLETEQPERLFYELKRLPEYTRLLGDNEGCFIPIEKEEENFLNILRRNEKETCVAGLTT 117
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ + + +DGP F + ++ K VE+ + G+
Sbjct: 118 LDLDEDGGIRKADGPLQFFLDKIVKLNLRKRFAVVELKVAGKE 160
>gi|260642278|ref|ZP_05415223.2| putative transcriptional regulator [Bacteroides finegoldii DSM
17565]
gi|260622942|gb|EEX45813.1| putative transcriptional regulator [Bacteroides finegoldii DSM
17565]
Length = 196
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RW + V EKK E RL++ G+++ + P ++ V R+ +R
Sbjct: 24 SKRWLVAVVRIYHEKKTSE----RLTKMGIENFL-----PIQQEVHKWSDRRKVVDRVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P + + ++ L P+ + D ++ ++ + + S
Sbjct: 75 PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134
Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE+V V GP A G + NVD KS+V V + + G
Sbjct: 135 SPLAPGEKVRVIKGPLAGLEGELVNVDG-KSKVAVRLTMLG 174
>gi|323167597|gb|EFZ53303.1| transcriptional activator RfaH [Shigella sonnei 53G]
Length = 137
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENP 95
P + + +G++ FP Y+ ++ +V H TI T V F+ G +
Sbjct: 3 CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP--EVIHTTTINATRGVSHFVRFGASL 60
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ V + I + V + + G++V +++G F F I D E +R +
Sbjct: 61 AIVPSAVIHQL--SVYKPKDIVDPATPY-PGDKVIITEGAFEGFQAIFTEPDGE-ARSML 116
Query: 156 EVVIFGRV 163
+ + +
Sbjct: 117 LLNLINKE 124
>gi|262172003|ref|ZP_06039681.1| transcriptional activator RfaH [Vibrio mimicus MB-451]
gi|261893079|gb|EEY39065.1| transcriptional activator RfaH [Vibrio mimicus MB-451]
Length = 121
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 56 SERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
+ FP Y+ ++ D + T++ T V+ F+ G +P + I + Q++
Sbjct: 2 VQEPLFPSYMFVRFDFEDGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQ 60
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ + E G+ V V+ G FA I + D + R + V + + P+ +
Sbjct: 61 LKGSARQLPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPMSIE 114
>gi|160882085|ref|ZP_02063088.1| hypothetical protein BACOVA_00023 [Bacteroides ovatus ATCC 8483]
gi|156112520|gb|EDO14265.1| hypothetical protein BACOVA_00023 [Bacteroides ovatus ATCC 8483]
Length = 152
Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RL + G+++ +P ++ V R+ E
Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P V + A ++ T + +P+ + D ++ ++ + + ++S
Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133
Query: 121 VFFEVGERVCVSDGPFASF 139
GE+V V GP
Sbjct: 134 APLARGEKVRVIKGPLTDL 152
>gi|237727428|ref|ZP_04557909.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434284|gb|EEO44361.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 170
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 12/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK ER P
Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GE + V GP G + VD K++V V + + G V++ VEKI+
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKII 166
>gi|323486156|ref|ZP_08091485.1| hypothetical protein HMPREF9474_03236 [Clostridium symbiosum
WAL-14163]
gi|323693006|ref|ZP_08107226.1| hypothetical protein HMPREF9475_02089 [Clostridium symbiosum
WAL-14673]
gi|323400482|gb|EGA92851.1| hypothetical protein HMPREF9474_03236 [Clostridium symbiosum
WAL-14163]
gi|323502887|gb|EGB18729.1| hypothetical protein HMPREF9475_02089 [Clostridium symbiosum
WAL-14673]
Length = 172
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 5/153 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ S E+ + S LS+ LD S + G R FP Y
Sbjct: 6 WYVLHCKSGQEETIIRSCKHHLSKPALDDAFQ----FSYERMKKYLGEWHVDTYRMFPDY 61
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V +++ + + +K + L + PV E I +S
Sbjct: 62 VFLQSSRPELLLKELKQYRDITDVLAQEDMLLPVQPEEEAMIRTLCGERHHMGLSRGLVR 121
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G +GP A +++ +D K + +
Sbjct: 122 NG-SFRAVNGPLAGKEALIRKLDLHKRIAVLNL 153
>gi|94266952|ref|ZP_01290603.1| NGN [delta proteobacterium MLMS-1]
gi|93452357|gb|EAT02982.1| NGN [delta proteobacterium MLMS-1]
Length = 176
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 27/179 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ + E ++R + + +P RVV R+ R FPGY
Sbjct: 10 WYAIRTKPHKE---------EMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGY 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPVSSV 121
+ ++ + I T IG L GE+ PV D IE + + +
Sbjct: 61 LFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQKE 120
Query: 122 FFEVGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V+ G F SF G K V + + I R + ++V
Sbjct: 121 KLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDRV 171
>gi|294777312|ref|ZP_06742765.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|294448841|gb|EFG17388.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
Length = 188
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK +R P
Sbjct: 24 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIKRVVIP 74
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 75 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE + V GP G + VD K++V V + + G V++ VEK+
Sbjct: 135 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKM 187
>gi|326799431|ref|YP_004317250.1| NGN domain-containing protein [Sphingobacterium sp. 21]
gi|326550195|gb|ADZ78580.1| NGN domain-containing protein [Sphingobacterium sp. 21]
Length = 169
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 18/158 (11%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + EKK L E P + RK E F
Sbjct: 5 KQWIAIYTRPKWEKKV---------NQFLVQQGIESFCPLIKTKRQWADRKKIVEIPLFS 55
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + +++ + ++ V+G + P+ +T++EI I + + S+
Sbjct: 56 SYVFAEVNHSEQ--YQVEQAAGVVGVVYHCGKPAIITEAEINRIKTLLREDYPE-LESIS 112
Query: 123 FE---VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
F+ +G R+ V G + + G V V K + V V
Sbjct: 113 FDQIGLGHRIKVKTGVLSDWQGEVIMV---KGKSVVMV 147
>gi|326625693|gb|EGE32038.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 131
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVT 99
+ + +G++ + FP Y+ ++ +V H TI T V F+ G +P+ V
Sbjct: 1 MITLEKMVRGKRTSVSEPLFPNYLFVEFDP--EVIHTTTINATRGVSHFVRFGAHPAIVP 58
Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
S I + V P + G+ V +++G F I D E R + + +
Sbjct: 59 SSVIHQLSIYKPEGVVDPETPY---PGDSVIITEGAFEGLKAIFTEPDGET-RSILLLNL 114
Query: 160 FGRVT 164
+
Sbjct: 115 LNKEV 119
>gi|220915023|ref|YP_002490331.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219952774|gb|ACL63164.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 118
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
R FPGY + ++ + I P V + TGE P+ + + ++ +
Sbjct: 2 RRPVFPGYAFVG-KRPEQSWRDILRVPGVRALVTTGEAPTELPP-WMMKMLIAADEMAAY 59
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
VG++V + D + G V E R+ V + FG+ + + +
Sbjct: 60 DRPRPQLAVGDKVQIRDELWEGLIGEVMR-APEGRRIAVLLKAFGKKHVLSVDVD 113
>gi|94265144|ref|ZP_01288908.1| NGN [delta proteobacterium MLMS-1]
gi|93454383|gb|EAT04684.1| NGN [delta proteobacterium MLMS-1]
Length = 169
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 27/179 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ + E ++R + + +P RVV R+ R FPGY
Sbjct: 3 WYVIRAKPHKE---------EMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPVSSV 121
+ ++ + I T IG L GE+ PV D IE + + +
Sbjct: 54 LFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQKE 113
Query: 122 FFEVGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V+ G F SF G K V + + I R + ++V
Sbjct: 114 KLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDRV 164
>gi|403978|gb|AAB01022.1| unknown [Mycoplasma genitalium]
Length = 214
Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 51/137 (37%), Gaps = 31/137 (22%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSE-----RVVSVRKGRK------------------- 53
V+++ ++ G +H + ++ + E V S++ G+
Sbjct: 7 VVKNLKAKIQALGFNHEIVDVKVLKEREVHEEVYSLKSGKLPRSLKNTTFNKWFVLDDYR 66
Query: 54 ----VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSEIEHI 106
SE+ Y+ IK + ++ + +++ P + G +G+ P P+ + + ++
Sbjct: 67 YLRVKISEKNLLGRYIYIKMIYSEDAWRIVRNFPGITGIVGSSGRGALPIPLDEKDANNL 126
Query: 107 MNQVEAAVQRPVSSVFF 123
++ P +
Sbjct: 127 EQMLKGISINPSKRIML 143
>gi|332085009|gb|EGI90191.1| transcriptional activator RfaH [Shigella dysenteriae 155-74]
Length = 131
Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVT 99
+ + +G++ FP Y+ ++ +V H TI T V F+ G +P+ V
Sbjct: 1 MITLEKIVRGKRTAVSEPLFPNYLFVEFDP--EVIHTTTISATRGVSHFVRFGASPAIVP 58
Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ I + V + + G++V +++G F F I D E +R + + +
Sbjct: 59 SAVIHQL--SVYKPKDIVDPATPY-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNL 114
Query: 160 FGRV 163
+
Sbjct: 115 INKE 118
>gi|319642711|ref|ZP_07997355.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
gi|317385646|gb|EFV66581.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
Length = 188
Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK +R P
Sbjct: 24 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIKRVVIP 74
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 75 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTE 134
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE + V GP G + VD K++V V + + G V++ VEK+
Sbjct: 135 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKM 187
>gi|265750655|ref|ZP_06086718.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263237551|gb|EEZ23001.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 172
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 12/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK ER P
Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GE + V GP G + VD K++V V + + G V++ VEK++
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKML 166
>gi|94267031|ref|ZP_01290674.1| NGN [delta proteobacterium MLMS-1]
gi|93452265|gb|EAT02911.1| NGN [delta proteobacterium MLMS-1]
Length = 169
Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 27/179 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ + E+ A R + + +P RVV R+ R FPGY
Sbjct: 3 WYVIRAKPHKEETA---------RQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGY 53
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPVSSV 121
+ ++ + I T IG L GE+ PV D IE + + +
Sbjct: 54 LFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQKE 113
Query: 122 FFEVGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V+ G F SF G K V + + I R + ++V
Sbjct: 114 KLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDRV 164
>gi|319902765|ref|YP_004162493.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319417796|gb|ADV44907.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
Length = 217
Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 13/170 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WY+ V ++ EK + + R+ D E+ + ++ + V G++ ER F
Sbjct: 35 KHWYVAIVNNHSEKLIADELVKRIKNQKEDEKDYEVYVAVQKEMRVLCNGKRKQVERIIF 94
Query: 62 PGYVLIKAVMTDKVYHT-IKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAA 113
P + I TD V I P + F+ G P V + ++
Sbjct: 95 PALIFIYC--TDLVRRKEIAYLPYIKRFMVNIAGAQQNGHRPVAVIPERQMIQLKRMVND 152
Query: 114 VQRPVS--SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ PV S +G+RV V+ G G + + + + + I G
Sbjct: 153 AENPVVFDSRPLHLGKRVRVNGGKLMGLEGHILQCSDGSINLVIMIDILG 202
>gi|260174451|ref|ZP_05760863.1| putative transcriptional regulator [Bacteroides sp. D2]
gi|315922718|ref|ZP_07918958.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696593|gb|EFS33428.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 189
Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RW + V EKK G RL++ G+++ + P ++ V R+ +R
Sbjct: 24 SKRWLVAIVRICHEKKT----GERLTKMGIENFL-----PIQQEVHQWSDRRKIVDRVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P + + + ++ + L P+ + D ++ ++ + + S
Sbjct: 75 PMMIFVHVDLQEQKEVLTLSSISRYLVLRGESTPAIIPDQQMSRFKFMLDYSDETISLST 134
Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE++ V GP A G + +V+ KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174
>gi|307942421|ref|ZP_07657772.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
gi|307774707|gb|EFO33917.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
Length = 206
Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV--RKGRKVNSERRFFP 62
W +V CE++A + + + L P ER+ V R + + + F
Sbjct: 41 WGVVYANPQCERRAFAGLINQGVVAHL---------PEERIERVQPRSKKTIVVNKPMFT 91
Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
Y+ + + T+++ V G L + +P + E+ ++ Q++ +R
Sbjct: 92 RYLFAGIDRQAGQDWSTVRECDGVEGVLSLDSAGSPYLIAAHEMVALIKQLDTG-ERIAD 150
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
F +VG+ + + G FA F V + V+ E +FGR T +
Sbjct: 151 GTFIKVGQSLLLPKGVFAKFKMTVTAYKPDAETVYGEFSLFGRKTRI 197
>gi|160885686|ref|ZP_02066689.1| hypothetical protein BACOVA_03690 [Bacteroides ovatus ATCC 8483]
gi|237719467|ref|ZP_04549948.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293370208|ref|ZP_06616768.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|298482878|ref|ZP_07001061.1| transcriptional regulator [Bacteroides sp. D22]
gi|299146176|ref|ZP_07039244.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
gi|156108499|gb|EDO10244.1| hypothetical protein BACOVA_03690 [Bacteroides ovatus ATCC 8483]
gi|229451327|gb|EEO57118.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292634705|gb|EFF53234.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|298271078|gb|EFI12656.1| transcriptional regulator [Bacteroides sp. D22]
gi|298516667|gb|EFI40548.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
Length = 196
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RW + V EKK G RL++ G+++ + P ++ V R+ +R
Sbjct: 24 SKRWLVAIVRICHEKKT----GERLTKMGIENFL-----PIQQEVHQWSDRRKIVDRVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P + + + ++ + L P+ + D ++ ++ + + S
Sbjct: 75 PMMIFVHVDLQEQKEVLTLSSISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134
Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE++ V GP A G + +V+ KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174
>gi|295083926|emb|CBK65449.1| transcription antitermination protein nusG [Bacteroides
xylanisolvens XB1A]
Length = 196
Score = 64.3 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RW + V EKK E RL++ G+++ + P ++ V R+ +R
Sbjct: 24 SKRWLVAIVRICHEKKTSE----RLTKMGIENFL-----PIQQEVHQWSDRRKVVDRVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P + + ++ L P+ + D ++ ++ + + S
Sbjct: 75 PMMIFVHVDPREQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134
Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE++ V GP A G + NV+ KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVNVNG-KSKVVVRLTMLG 174
>gi|254885039|ref|ZP_05257749.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254837832|gb|EET18141.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 166
Score = 64.3 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK ER P
Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE + V GP G + VD K++V V + + G V++ VEK+
Sbjct: 113 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKM 165
>gi|329954627|ref|ZP_08295687.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|328527168|gb|EGF54172.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 187
Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V S EKK + RL+ G++ +P + + R+ +R P
Sbjct: 16 RQWLVAYVQSCLEKKTAQ----RLAAMGIE-----CYLPVQSEIRQWSDRRKRVDRLVIP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + ++ V L P+ + D ++ ++ + +
Sbjct: 67 MMIFVHVTPQERP--LPLSLQAVSRYMVLRGESTPAVIPDEQMAQFRFMLDYSPEAVEMC 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
SV G+ V V GP A G + V+ KS+V V + + G V++ VEK
Sbjct: 125 SVPLAPGDAVKVIKGPLAGLEGELITVNG-KSKVAVRLDMLG-CAHVDIPIGFVEK 178
>gi|53714067|ref|YP_100059.1| putative transcriptional regulator UpxY-like protein [Bacteroides
fragilis YCH46]
gi|60682261|ref|YP_212405.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|253564711|ref|ZP_04842167.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265766312|ref|ZP_06094353.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|52216932|dbj|BAD49525.1| putative transcriptional regulator UpxY homolog [Bacteroides
fragilis YCH46]
gi|60493695|emb|CAH08484.1| putative transcriptional regulator (pseudogene) [Bacteroides
fragilis NCTC 9343]
gi|251946176|gb|EES86553.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263253980|gb|EEZ25445.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163738|emb|CBW23292.1| putative transcriptional regulator (pseudogene) [Bacteroides
fragilis 638R]
Length = 172
Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 15/162 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W V EKK + RL+ G++ + P + + R+ ER P
Sbjct: 2 KSWLAAYVRLYHEKKTRD----RLTAMGIESFL-----PVQEEIHQWSDRRKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
+ + ++ + V L P+ + D ++E ++ + + V
Sbjct: 53 MMIFVHVDPAERA--EVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVC 110
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S GE+V V GP A G + +D KS+V V + + G
Sbjct: 111 SSPLAPGEQVRVIKGPLAGLEGELVTIDG-KSKVAVRLDMLG 151
>gi|315180818|gb|ADT87732.1| transcriptional activator RfaH [Vibrio furnissii NCTC 11218]
Length = 122
Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
Query: 56 SERRFFPGYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
+ FP Y+ ++ + T++ T V F+ G P + I + Q+ +
Sbjct: 2 VKEPLFPSYMFVRFDFNQGPTFTTVRSTRGVTDFIRFGAEPKELQGDLIYE-LKQLSTHL 60
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G+ V V G F I + D E R + V + + P+ +
Sbjct: 61 DDVSDAKMPVRGQEVEVKSGQFCGLKAIYQQPDGET-RSIMLVKMLSQSVPMSIE 114
>gi|255010372|ref|ZP_05282498.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
gi|313148171|ref|ZP_07810364.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136938|gb|EFR54298.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 172
Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 15/162 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W V EKK + RL+ G++ + P + + R+ ER P
Sbjct: 2 KSWLAAYVRLYHEKKTRD----RLTAMGIESFL-----PVQEEIHQWSDRRKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
+ + ++ + V L P+ + D ++E ++ + + V
Sbjct: 53 MMIFVHVDPAERA--EVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVC 110
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S GE+V V GP A G + ++ KS+V V + + G
Sbjct: 111 SSPLAPGEQVRVIKGPLAGLEGELVTING-KSKVAVRLDMLG 151
>gi|126738215|ref|ZP_01753936.1| hypothetical protein RSK20926_06762 [Roseobacter sp. SK209-2-6]
gi|126720712|gb|EBA17417.1| hypothetical protein RSK20926_06762 [Roseobacter sp. SK209-2-6]
Length = 202
Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 20/182 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KG--RKVNSERRF 60
RW++++V E + + V E +P+ + + +G RK+ ++
Sbjct: 32 RWFVLKVQPMKEFEVETWLAH-------QEGVLEAWLPTNKAWRNQARGHRRKIQYRQKI 84
Query: 61 FPGYVLIKAVMTDKVYHTI--KDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQ 115
PGYV V + + + KV+G +G P PV ++ + V+
Sbjct: 85 APGYVF-GCVERRVAWDLLKRRSNGKVLGVVGHNGRPLPVPKEQMRAMKKLPKIVQKIYA 143
Query: 116 RPVSSVFFEVGERVCVS-DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
S+ G++ + DGP + V V+ + V + G +++ Q+E
Sbjct: 144 DAQSAKLVRPGDKARILDDGPMCDWVVDVTEVNG--GIAKILVPLLG-EREAQISMEQLE 200
Query: 175 KI 176
++
Sbjct: 201 RL 202
>gi|150005199|ref|YP_001299943.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|149933623|gb|ABR40321.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
Length = 166
Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK +R P
Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIKRVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE + V GP G + VD K++V V + + G V++ VEK+
Sbjct: 113 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKM 165
>gi|149003855|ref|ZP_01828683.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS69]
gi|147758189|gb|EDK65192.1| transcription antitermination protein NusG [Streptococcus
pneumoniae SP14-BS69]
Length = 63
Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
W+++Q YS E K E++ R + + + IP++ V + R+
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKMEREKK 63
>gi|237714513|ref|ZP_04544994.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406377|ref|ZP_06082926.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294643258|ref|ZP_06721084.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294806451|ref|ZP_06765292.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
gi|229445282|gb|EEO51073.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355080|gb|EEZ04171.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292641381|gb|EFF59573.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CC 2a]
gi|294446314|gb|EFG14940.1| transcription termination/antitermination factor NusG [Bacteroides
xylanisolvens SD CC 1b]
Length = 196
Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RW + V EKK E RL++ G+++ + P ++ V R+ +R
Sbjct: 24 SKRWLVAIVRICHEKKTSE----RLTKMGIENFL-----PIQQEVHQWSDRRKVVDRVLL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P + + ++ L P+ V D ++ ++ + + S
Sbjct: 75 PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVVPDQQMLRFKFMLDYSDETISMST 134
Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GER+ V GP A G + +V+ KS+V V + + G
Sbjct: 135 SPLAPGERIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174
>gi|5739314|gb|AAD50428.1|AF161701_1 HnusG [Streptococcus pneumoniae]
Length = 74
Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
+ EI I+ + VQ E+G+ V + DG FA + G + +D ++V + + +
Sbjct: 2 EQEIRDILVSMGQTVQEF--DFDVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISM 57
Query: 160 FGRVTPVELAYNQVEKI 176
FG T E+ NQ+ ++
Sbjct: 58 FGNDTVAEVNLNQIAEL 74
>gi|260769077|ref|ZP_05878011.1| transcriptional activator RfaH [Vibrio furnissii CIP 102972]
gi|260617107|gb|EEX42292.1| transcriptional activator RfaH [Vibrio furnissii CIP 102972]
Length = 122
Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
Query: 56 SERRFFPGYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
+ FP Y+ ++ + T++ T V F+ G P + I + Q+ +
Sbjct: 2 VKEPLFPSYMFVRFDFNQGPTFTTVRSTRGVTDFIRFGAEPKELQGDLIYE-LKQLSTHL 60
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G+ + V G F I + D E R + V + + P+ +
Sbjct: 61 DDVSDAKMPVRGQEIEVKSGQFCGLKAIYQQPDGET-RSIMLVKMLSQSVPMSIE 114
>gi|212694663|ref|ZP_03302791.1| hypothetical protein BACDOR_04194 [Bacteroides dorei DSM 17855]
gi|212663164|gb|EEB23738.1| hypothetical protein BACDOR_04194 [Bacteroides dorei DSM 17855]
Length = 166
Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 12/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK ER P
Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + + ++ L P+ + D ++E ++ + + +
Sbjct: 53 MMIFVHVDVAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE + V GP G + VD K++V V + + G V++ VEK+
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKM 165
>gi|237711067|ref|ZP_04541548.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229454911|gb|EEO60632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 166
Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V + EKK E RL+ +++ + P + + RK ER P
Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIENFL-----PVQEEIRQWTYRKKKIERVVIP 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SV 121
+ + ++ L P+ + D ++E ++ + + +
Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE + V GP G + VD K++V V + + G V++ VEK+
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLG-CAGVDMPVGFVEKM 165
>gi|153806651|ref|ZP_01959319.1| hypothetical protein BACCAC_00921 [Bacteroides caccae ATCC 43185]
gi|149131328|gb|EDM22534.1| hypothetical protein BACCAC_00921 [Bacteroides caccae ATCC 43185]
Length = 188
Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RW + V + EKK E RL++ G+++ + P ++ V R+ +R
Sbjct: 24 SKRWLVAIVRIHHEKKTSE----RLTKMGVENFL-----PIQQEVHNWSDRRKVVDRVIL 74
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
P + + ++ L P+ + D ++ ++ + + +S+
Sbjct: 75 PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETICMST 134
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GE++ V GP A G + +++ KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVDMNG-KSKVAVRLTMLG 174
>gi|295116148|emb|CBL36995.1| Transcription antiterminator [butyrate-producing bacterium SM4/1]
Length = 201
Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 30/185 (16%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E E I + + L + G+ ++ FPGY
Sbjct: 2 WYVIQTETGKE----EEILLFMRNMIPEELCRHCFLIWAEWPRRAGGQWNIVKKNMFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAV--------- 114
+ + ++++ +K P + LG P+ E E +
Sbjct: 58 IFAETEEPEELFQRLKKVPGLTKLLGGDRCEFIPLGAEE-ERFFCMIGEKEGNCTGENRA 116
Query: 115 ---------------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
S+V + ++ + +G SF + V+ K V V +
Sbjct: 117 AKGRAGTNKRKWDCLSVRPSTVRVDEEGKLEILNGALRSFKEEIVRVNLHKRYAVVRVRM 176
Query: 160 FGRVT 164
G T
Sbjct: 177 LGEKT 181
>gi|317131095|ref|YP_004090409.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
gi|315469074|gb|ADU25678.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
Length = 164
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 21/141 (14%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ Y++QV S EK ++ P E G
Sbjct: 1 MSM--YVLQVLSGAEKDVCAALL---------DQGIPAYTPEENRQIRSGGLWRARPYLL 49
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQR 116
F GYV + Y+ I+ P V+ +L G +P + I + Q+ +
Sbjct: 50 FRGYVFVVVRDVRASYYQIRRIPGVLRWLELHAGQATALTPGEEDRIRRMGGQLLESHVL 109
Query: 117 PVSSVFFEVGERVCVSDGPFA 137
++ FE DGP
Sbjct: 110 QLADDLFEP------VDGPLK 124
>gi|325295631|ref|YP_004282145.1| NGN domain-containing protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325066079|gb|ADY74086.1| NGN domain-containing protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 168
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 20/169 (11%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
TP+W++V + E+ + R G+ ++ + V+KG + F
Sbjct: 6 TPKWHVVYIKPRKEEVVKVQLE----RIGIKTFYPKVKV-------VKKG--IEKVEPMF 52
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P Y+ K + ++ + V + G +++ IE++ + ++ +
Sbjct: 53 PLYMFAKFSVVKDFFN-VHFARGVKRVVKFGNQVPSLSEEFIEYLRSVNGCLIEN---KL 108
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR---VTPVE 167
+ + V + DGPF +F G V + + RV V + PVE
Sbjct: 109 GIKESDCVKIVDGPFRNFTGKVLKMKRGEERVVVLLKAMNSLTLEVPVE 157
>gi|167763647|ref|ZP_02435774.1| hypothetical protein BACSTE_02022 [Bacteroides stercoris ATCC
43183]
gi|167698941|gb|EDS15520.1| hypothetical protein BACSTE_02022 [Bacteroides stercoris ATCC
43183]
Length = 206
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V S EKK + RL+ G++ +P + + R+ +R P
Sbjct: 16 RQWLVAYVQSCLEKKTAQ----RLAAMGIE-----CYLPVQSEIRQWSDRRKRVDRLVIP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + ++ V L P+ + D +++ ++ + +
Sbjct: 67 MMIFVHVTPQERP--LPLSLQAVSRYMVLRGESTPAVIPDEQMDRFRFMLDYSPEAVEMC 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S G+ V V GP A G + V+ KS+V V + + G V++ VEK
Sbjct: 125 SAPLAPGDAVKVIKGPLAGLEGELITVNG-KSKVAVRLDMLG-CAHVDVPIGFVEK 178
>gi|325833254|ref|ZP_08165760.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
gi|325485636|gb|EGC88104.1| transcription termination/antitermination factor NusG [Eggerthella
sp. HGA1]
Length = 164
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 6/169 (3%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
++QV E+ E R+ LV + S ++ +G FPGY+
Sbjct: 1 MLQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLLTETMFPGYLF 56
Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
+ + + TIK + LG + E + + + S + G
Sbjct: 57 VASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDNG 116
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ +GP +K +D K ++++ + + V + V K
Sbjct: 117 RTIID-EGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 163
>gi|126737096|ref|ZP_01752831.1| transcription antitermination protein NusG [Roseobacter sp.
SK209-2-6]
gi|126721681|gb|EBA18384.1| transcription antitermination protein NusG [Roseobacter sp.
SK209-2-6]
Length = 204
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 20/181 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KG--RKVNSERRFF 61
W++++V E + + G V E +P+ + + +G RKV ++
Sbjct: 33 WFVLKVQPMKEFEVEMWL-------GQQEGVLEAWLPTNKAWRNQARGHRRKVQYRQKIA 85
Query: 62 PGYVLIKAVMTDKVYHTI--KDTPKVIGFLGTGENPSPVTDSEIEHIM---NQVEAAVQR 116
PGYV + + + KV+G +G P PV + ++ + V+
Sbjct: 86 PGYVFACVE-RRIAWDLLQRRSNGKVLGVVGYNGRPLPVPEEQMRAMKKLPKIVQKIYAE 144
Query: 117 PVSSVFFEVGERVCVS-DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S G++ + DGP + V V+ + V + G +++ Q+E+
Sbjct: 145 AQSVKLVRPGDKARILDDGPMCDWVVDVTEVNG--GIAKILVPLLG-EREAQISMEQLER 201
Query: 176 I 176
I
Sbjct: 202 I 202
>gi|32471651|ref|NP_864644.1| NusG-like protein- transcription activator [Rhodopirellula baltica
SH 1]
gi|32397022|emb|CAD72325.1| probable NusG-like protein-putative transcription activator
[Rhodopirellula baltica SH 1]
gi|327539892|gb|EGF26494.1| NusG antitermination factor [Rhodopirellula baltica WH47]
Length = 184
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 18/174 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+++ S EK + + +G+ H + + GR S F Y
Sbjct: 26 WWLLYTKSRQEKAVIRKLRD----AGVPHYAPMVK----QRFRSPAGRMRESFVPLFSTY 77
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSSVF 122
V ++ Y I G + V D +++ I + + V + S
Sbjct: 78 VFLRGD-DQARYEAI-----CTGSVLKASEIVQVPDLIEDLQQIRSLIVMGVPLTIES-Q 130
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ GE V V +G FA + G V + E R+ V V + V+L Q+EKI
Sbjct: 131 LQPGEHVRVKNGTFAGYEGTVIRRENET-RLLVFVRFMEQGVSVKLEDCQLEKI 183
>gi|125588461|gb|EAZ29125.1| hypothetical protein OsJ_13188 [Oryza sativa Japonica Group]
Length = 390
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 40 IPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT 99
IP E V S+ + K ER D+ + +++ G + + P V
Sbjct: 267 IPVEEVESIIREEKEEQER-------------VDREFEEMEN----GGIVESFNKP--VE 307
Query: 100 DSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
DSE+ +MN+++ ++P+S F G V V GPF F G + V+ + +
Sbjct: 308 DSEL-MLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKAT 366
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
+++ +FG+ + V+L ++Q+E +
Sbjct: 367 LQLTLFGKESFVDLDFDQIEAV 388
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+W++V+V V+ + +SR + IP E V S+ + K ER
Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRRKRQIKKPK-PIPVEEVESIIREEKEEQER---- 158
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
D+ + +++ G + + P V DSE+ +MN+++ ++P+S
Sbjct: 159 ---------VDREFEEMEN----GGIVESFNKP--VEDSEL-MLMNKIKRQFKKPISKGG 202
Query: 121 ---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
F G V V GPF F G + V+ + +V + +
Sbjct: 203 SNHNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKVRLMI 242
>gi|51247052|ref|YP_066935.1| related to transcriptional activators [Desulfotalea psychrophila
LSv54]
gi|50878089|emb|CAG37945.1| related to transcriptional activators [Desulfotalea psychrophila
LSv54]
Length = 193
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ + E +++ + +P R FFPGY
Sbjct: 29 WYAIRTKNKKE---------EVAKFNYQRQGYTVYLPLLRKTVHHARSTTEKLVAFFPGY 79
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPVSSV 121
+ + ++ + I T +G L G++ + I + + + + + +
Sbjct: 80 LFLNLAPAEQNWTAIASTRGSLGALCFGDSYIEIPGWVISDLKAREDKGLSILAKDLIKE 139
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G V V+ S +V ++ ++ V V + I R ++ ++++
Sbjct: 140 NLTPGSVVTVNIPGLESVEAVVYSIRGSEN-VDVLLNILSRQVKTTVSLDRIK 191
>gi|253578793|ref|ZP_04856064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849736|gb|EES77695.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 101
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138
++ + +GTG+ P+ EI+ +M +SS E +RV + GP
Sbjct: 5 LRKVIGLTKLIGTGDEIVPLVQEEIDLLMKIGTDKQLVEMSSGIIE-NDRVQILAGPLMG 63
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G ++ +D K ++E+ +FGR ++ + K
Sbjct: 64 MEGNIRRIDRHKRTAYLEIEMFGRTVEMKGGLEIIRK 100
>gi|323483811|ref|ZP_08089190.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum
WAL-14163]
gi|323402896|gb|EGA95215.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum
WAL-14163]
Length = 187
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E++ + I L R + + + + G R FPGY
Sbjct: 2 WYVIQTVTGKEEELMLFIRNILCRERYES----CFVIYAQWMKRLGGEWQIQVRPLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V I +++Y +K PK LGTG + PV E E + +
Sbjct: 58 VFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEE-EKFLRMITGGSGEMADEPAI 116
Query: 124 E 124
E
Sbjct: 117 E 117
>gi|323692775|ref|ZP_08107003.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum
WAL-14673]
gi|323503217|gb|EGB19051.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum
WAL-14673]
Length = 187
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E++ + I L R + + + + G R FPGY
Sbjct: 2 WYVIQTVTGKEEELMLFIRNILCRERYES----CFVIYAQWMKRLGGEWQIQVRPLFPGY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V I +++Y +K PK LGTG + PV E E + +
Sbjct: 58 VFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEE-EKFLRMITGGSGEMADEPAI 116
Query: 124 E 124
E
Sbjct: 117 E 117
>gi|317480580|ref|ZP_07939669.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|316903273|gb|EFV25138.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 244
Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 23/166 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ EKKA + I + + P+ V + G++ E P
Sbjct: 70 WYALRTTYGREKKAYDYIISKGGTA---------FYPTLSTVKLVDGKRKTVEESRIPNL 120
Query: 65 VLIKAVMTDKVYHTIKDTPKV--IGF------LGTGENPSPVTDSEIEHIMNQVEAAVQR 116
+++ + D + + F +G P + D++IE + +A
Sbjct: 121 FFAYGT-EEEIKSFVYDNVNLHYLRFYYRHFHIGNKIEPLIIPDNQIESLRIICKADADD 179
Query: 117 PVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ S F+ G+ V + +G F GIV + RV + +
Sbjct: 180 IIVSTDEVQKFQKGQAVRIVEGKFKGVTGIVARYQG-QQRVGIVID 224
>gi|255691805|ref|ZP_05415480.1| putative transcriptional regulator [Bacteroides finegoldii DSM
17565]
gi|260622523|gb|EEX45394.1| putative transcriptional regulator [Bacteroides finegoldii DSM
17565]
Length = 191
Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 75/176 (42%), Gaps = 12/176 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW + QV EKK E RL++ G+++ +P +R + R+ + P
Sbjct: 27 KRWLVAQVRIYHEKKTSE----RLTKMGIENY-----VPVQRKTHLWSDRRKQIDHIVIP 77
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
+ ++ ++ + L P+ + D+++E ++ + + +S+
Sbjct: 78 MKIFVRVDAQEQKDVLMLSAVSRYMVLHGESAPAVIPDTQMEKFKFMLDYSEEAVNMSNT 137
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
GE+V V GP G + ++ K+++ V + + G V++ +E++V
Sbjct: 138 PLSPGEKVRVIKGPLRGLEGELVTLNG-KTKIAVRLDMLG-CASVDMPVGYIERVV 191
>gi|160889704|ref|ZP_02070707.1| hypothetical protein BACUNI_02131 [Bacteroides uniformis ATCC 8492]
gi|317478746|ref|ZP_07937899.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|156860696|gb|EDO54127.1| hypothetical protein BACUNI_02131 [Bacteroides uniformis ATCC 8492]
gi|316905081|gb|EFV26882.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 179
Score = 61.3 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 14/176 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V S EKK E RL G+++ + P + + R+ +R P
Sbjct: 14 RQWLVAYVQSCLEKKTAE----RLKAMGVEYYL-----PIQSEIRQWSDRRKKVDRLVIP 64
Query: 63 GYVLIKAVMTDK-VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
+ + ++ + T++ + + L P+ + + ++E ++ + + S
Sbjct: 65 MMIFVHVTPQERPLPLTLQAISRYM-VLRGESRPAVIPEEQMERFRFMLDYSPEAVEICS 123
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V GP A G + + KS+V V + + G V++ VE+I
Sbjct: 124 TPLAAGDAVKVIKGPLAGLEGELVMIGG-KSKVAVRLDMLG-CAHVDMPIGYVERI 177
>gi|169837422|ref|ZP_02870610.1| transcription antitermination protein NusG [candidate division
TM7 single-cell isolate TM7a]
Length = 91
Score = 61.3 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT 36
+WYI+ YS EKK + R+ L
Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDRAF 49
>gi|297200225|ref|ZP_06917622.1| transcription antitermination protein [Streptomyces sviceus ATCC
29083]
gi|197713321|gb|EDY57355.1| transcription antitermination protein [Streptomyces sviceus ATCC
29083]
Length = 158
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ VG V ++DGPFA+ V +D +V + +FGR PVEL++
Sbjct: 2 PAPDIAVGASVTITDGPFATLRATVTEIDTPSQKVKGVIELFGRHAPVELSFT 54
>gi|218512771|ref|ZP_03509611.1| transcription antitermination protein NusG [Rhizobium etli 8C-3]
Length = 40
Score = 60.9 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI 40
M RWYIV YSN EKK E I + + GL+HL +I +
Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILV 40
>gi|323693007|ref|ZP_08107227.1| hypothetical protein HMPREF9475_02090 [Clostridium symbiosum
WAL-14673]
gi|323502888|gb|EGB18730.1| hypothetical protein HMPREF9475_02090 [Clostridium symbiosum
WAL-14673]
Length = 181
Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E++ VE + L ++ +++ G + FP Y
Sbjct: 2 WYVIQTITGKEQELVELVYKMLPKTVYKECFF----LKRQLLKRLGGEWLEVTETLFPAY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V + D+V++ +K P+ LG P+ + E + + ++ A + PV +
Sbjct: 58 VFLDLTNADEVFYELKRIPEFSKLLGDNLGEFIPLEEEERKFL--ELLCANESPVDNADK 115
Query: 124 EVGERVCVSDGPFASFNGIVKNVDE 148
G + + + G ++ +D
Sbjct: 116 GAGYYLVRNTKVYLDAQGEIERLDG 140
>gi|183222752|ref|YP_001840748.1| putative transcription antitermination protein NusG [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189912784|ref|YP_001964339.1| transcription antiterminator [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167777460|gb|ABZ95761.1| Transcription antiterminator [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167781174|gb|ABZ99472.1| Putative transcription antitermination protein nusG [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 179
Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 12/144 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIV EKK E + +++ + P + R P Y
Sbjct: 13 WYIVYTKPRAEKKLSELLRK----YHIENYL-----PIRKERKKWTDRFKWIHVPVLPSY 63
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
+ ++ V + + P + F+ P+ V ++++ + ++ + + +
Sbjct: 64 IFVRIVFWRD-KNKVLQLPGSVQFVFHKGQPAIVEQNDLDVLEKGLQEYAESLKMNPELL 122
Query: 123 FEVGERVCVSDGPFASFNGIVKNV 146
+ G+ V + DG F + V
Sbjct: 123 LQKGKLVRIIDGSFVGKTMEIIKV 146
>gi|29346768|ref|NP_810271.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|253572224|ref|ZP_04849627.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29338665|gb|AAO76465.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|251837999|gb|EES66087.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 190
Score = 60.5 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW + V + EKK E RLS+ G+++ + P ++ V R+ ER P
Sbjct: 25 KRWLVALVRISHEKKTSE----RLSKMGIENFL-----PVQQEVHQWSDRRKVVERVLLP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
+ + M ++ + + L P+ + D ++ ++ + + +S
Sbjct: 76 MMIFVHVDMYEQ--KEVLTLGSISRYMVLRGESTPAVIPDEQMHRFKFMLDYSDEAINMS 133
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G ++ V GP + G + V+ KS+V V + + G
Sbjct: 134 TTPLSPGTKIKVIKGPLSGLQGELVTVNG-KSKVAVRLTMLG 174
>gi|254477058|ref|ZP_05090444.1| hypothetical protein RR11_2897 [Ruegeria sp. R11]
gi|214031301|gb|EEB72136.1| hypothetical protein RR11_2897 [Ruegeria sp. R11]
Length = 218
Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 11/153 (7%)
Query: 26 LSRSGLDHLVTEITIPSERVVSVRK---GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
+ L E+ +P ++ S + R G++ + +H +
Sbjct: 60 VPELVLQKAGFEVFLPIKKEWSRVNRYSSEQKLKCRPAMEGWLFVGWAAGQARFHELMAL 119
Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS------VFFEVGERVCVSDGPF 136
V G +G G P ++D+++ +M + R +S V F VG+ V V GPF
Sbjct: 120 DVVSGVMGAGGQPVRISDAKVRFLMRKFGGGRLRRKASNVEAEPVRFSVGDLVRVDAGPF 179
Query: 137 ASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
V +D + + G+ V+L
Sbjct: 180 EGQ--TVSLLDVSGGSARAVMTLLGKDVEVDLE 210
>gi|153930622|ref|YP_001393253.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758]
gi|152958166|gb|ABS45629.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758]
Length = 159
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK--GRKVNSERRF 60
WY++ + + GLD L PS +V VR G
Sbjct: 2 KNWYLLSYKYGQVNRV---------QFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPM 52
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
FP Y+ ++ + TI T V F+ G P P+ S I +MN+ E + QR
Sbjct: 53 FPTYLFVEFDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLMNRSECSSQRNEE 111
>gi|293370096|ref|ZP_06616661.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|292634824|gb|EFF53348.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
Length = 159
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EKK E RL + G+++ +P ++ + R+ E P V + +
Sbjct: 3 HEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLLPMMVFVHVNPKE 53
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVS 132
+ T + +P+ + D ++ ++ + + ++S GE+V V
Sbjct: 54 RKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVV 113
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GP G + NVD KS++ V + + G
Sbjct: 114 KGPLTGLVGELVNVDG-KSKIAVRLNMLG 141
>gi|323486157|ref|ZP_08091486.1| hypothetical protein HMPREF9474_03237 [Clostridium symbiosum
WAL-14163]
gi|323400483|gb|EGA92852.1| hypothetical protein HMPREF9474_03237 [Clostridium symbiosum
WAL-14163]
Length = 181
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E++ V+ + L ++ +++ G + FP Y
Sbjct: 2 WYVIQTITGKEQELVDLVYKMLPKTVYKECFF----LKRQLLKRLGGEWLEVTETLFPAY 57
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V + D+V++ +K P+ LG P+ + E + + ++ A + PV +
Sbjct: 58 VFLDLTNADEVFYELKRIPEFSKLLGDNLGEFIPLEEEERKFL--ELLCANESPVDNADK 115
Query: 124 EVGERVCVSDGPFASFNGIVKNVDE 148
G + + + G ++ +D
Sbjct: 116 GAGYYLVRNTKVYLDAQGEIERLDG 140
>gi|198275335|ref|ZP_03207866.1| hypothetical protein BACPLE_01496 [Bacteroides plebeius DSM 17135]
gi|198271918|gb|EDY96188.1| hypothetical protein BACPLE_01496 [Bacteroides plebeius DSM 17135]
Length = 171
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 15/175 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V + EKK E + +P + V+ RK ++ P
Sbjct: 9 WYAFYVRMHHEKKTAEKLEMLKVVH---------FLPIQEVIRQWSDRKKKIKQVVIPML 59
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
+ I ++ +++ P + G L P+ + + E+E ++ + + S
Sbjct: 60 IFICTDEKGRIE-LLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSDETIRFQSE 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
GE+V V G G + + E+ S+V + + G T VE+ V+K+
Sbjct: 119 PLAPGEKVEVIKGSLKGLQGELVEL-EDHSQVMIRIEHLGYAT-VEIPVGYVKKL 171
>gi|302348744|ref|YP_003816382.1| Putative transcription antitermination protein nusG [Acidilobus
saccharovorans 345-15]
gi|302329156|gb|ADL19351.1| Putative transcription antitermination protein nusG [Acidilobus
saccharovorans 345-15]
Length = 172
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 33/173 (19%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R+Y + V E++ V +G R LD + G
Sbjct: 21 RFYAIYVTGGYEERVVAVLGERARTLQLD-------------------VRSIVYSPDLKG 61
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V ++ +Y+ I+ + P+ V+ +I + V+ P ++
Sbjct: 62 VVFVEVGDVKDLYYLIRGVRNIKR-----RRPTMVSVDDILKL-------VKPPAAAEPI 109
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ + V GPF G + V K V V ++ V + +QV+ +
Sbjct: 110 AKGDVIQVIGGPFKGMRGRIIEV--RKGEVDVNLLEGDSKIIVTIPIDQVKPV 160
>gi|329964892|ref|ZP_08301900.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328524533|gb|EGF51601.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 181
Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
T WY +V+ K E I L + G++ + P E V+ R K + +
Sbjct: 7 TLHWYAFKVF--Y-NKVFE-IEELLKKDGIETFI-----PCETVIVERGEVKKSICKPVI 57
Query: 62 PGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+ ++ ++ ++ +G + P + + E+ M + Q
Sbjct: 58 ASLLFFRSTEQQALHQQQCLLERVILYTRLVGWQKLPFAIPEREMNLFMLVATSGEQGLE 117
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
S + +G+ V V DGPF G + + + R+ V +
Sbjct: 118 YLCDSPRDYRIGQHVSVIDGPFKGAEGYIHRIKGNR-RLIVAIE 160
>gi|71737973|ref|YP_273246.1| transcriptional activator RfaH [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558526|gb|AAZ37737.1| transcriptional activator RfaH [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 192
Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY+VQ S + +A E++ + G + P+ S + FP
Sbjct: 42 KEWYLVQCKSGQDSRAEENLTAQ----GYANFR-----PTINASSESRSVNTKHNSPLFP 92
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
GY+ I +D + ++ T ++ + G V + I+ I + E
Sbjct: 93 GYLFIHLSASDN-WAPVRSTKGILTIVKFGGRAHAVRNEIIQDIKTRAE 140
>gi|46446232|ref|YP_007597.1| putative transcription antitermination factor NusG [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399873|emb|CAF23322.1| putative transcription antitermination factor NusG [Candidatus
Protochlamydia amoebophila UWE25]
Length = 67
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
+WY+VQV S EKK +++ L G+ + +I +P+E V V+K
Sbjct: 3 KWYVVQVLSTHEKKVKKALEEHLELKGMSGEIEQILLPTENVSEVKK 49
>gi|262275258|ref|ZP_06053068.1| hypothetical protein VHA_002240 [Grimontia hollisae CIP 101886]
gi|262220503|gb|EEY71818.1| hypothetical protein VHA_002240 [Grimontia hollisae CIP 101886]
Length = 171
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 12/170 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY V + N E+K + L G E+ +P ++ R+ + F
Sbjct: 5 RWYAVYTHFN-EEKV---LRDELLAKG-----YEVYLPERKLWETLGNRRRVTYEPLFKC 55
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
++ ++ T + +K + G+ + +++S I I + S
Sbjct: 56 HLFVRT--TPEGLKNVKQAQGFSHLVRYGKYVATISESHIIKIKTILYYYEDATSVSNSN 113
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
G V V +GP G++ + E+ +E+ G V + + +
Sbjct: 114 VEGLAVAVVNGPLKGMIGVLPAGEGERPIA-MEIGQLGYSVNVTVPMDTI 162
>gi|302382487|ref|YP_003818310.1| NGN domain protein [Brevundimonas subvibrioides ATCC 15264]
gi|302193115|gb|ADL00687.1| NGN domain protein [Brevundimonas subvibrioides ATCC 15264]
Length = 188
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 22/170 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V + N EK A + + H V +P +R G S R P Y
Sbjct: 15 WFVVITHVNQEKLAKYQLERQ------GHAVYMPMVPPSPRARMRNGVP-PSVRPMIPRY 67
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQV--------EA 112
+ ++ + + I T V + G G P + IE I + EA
Sbjct: 68 LFVQVDLDQPGWPAIYSTFGVSEVISSGTGEGRRPRAIPTRFIEEIRAREVNGLVILPEA 127
Query: 113 AVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
P + F+ G+++ GP A + +V + +R V + G
Sbjct: 128 RKAGPAPVACRFKKGDKLR-WHGPTADYE-VVFQQMVDGNRAEVVFTLMG 175
>gi|223933545|ref|ZP_03625527.1| NusG antitermination factor [Streptococcus suis 89/1591]
gi|223897805|gb|EEF64184.1| NusG antitermination factor [Streptococcus suis 89/1591]
Length = 63
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
+ +VG+ V + DG F + G + +D ++V + + +FG T E+ +
Sbjct: 1 MGQTVQEFDIDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLS 58
Query: 172 QVEKI 176
Q+ ++
Sbjct: 59 QIAEL 63
>gi|217073910|gb|ACJ85315.1| unknown [Medicago truncatula]
Length = 329
Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 1 MTPRWYIVQVYSNCEKKAV-----ESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKV 54
+ P+W+ V+V + E++ L++ + ++ P ++ G
Sbjct: 89 LGPQWWGVRV-----SRVKGQYTAEALARSLAKF-FPDIEFKVCAPAIHEKKRLKSGSIS 142
Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHI 106
+ FPG + ++ + ++ IK+ V GF+G+ P PV + ++E I
Sbjct: 143 VKSKPLFPGCIFLRCELNKPLHDYIKEYEGVGGFIGSKVGNTKKQINKPRPVAEDDMEAI 202
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
Q + + + E + S P V
Sbjct: 203 FKQAKVEQENADKAFEEEEKKAAVNSGNPNKELESDVSK 241
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ G V + G F F G +K ++ + V +FG+ V+L
Sbjct: 261 ITEEASSAKKKPKLVTGSTVQIISGSFLGFAGTLKKLNSKTKMATVHFTMFGKENIVDLD 320
Query: 170 YNQV 173
+++
Sbjct: 321 VSEI 324
>gi|156936529|ref|YP_001440444.1| hypothetical protein ESA_pESA2p06575 [Cronobacter sakazakii ATCC
BAA-894]
gi|156534783|gb|ABU79608.1| hypothetical protein ESA_pESA2p06575 [Cronobacter sakazakii ATCC
BAA-894]
Length = 149
Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFF 61
+WY++ S + I R+SR + L E+ P V+ R + E+ F
Sbjct: 3 KWYVLYCNS-------QDI-QRISRRT-EDLGVEVFCPRYIKVTPRTDCRAVRQEEKPLF 53
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
P Y+ ++ + TI P GF+ G P V +S I I
Sbjct: 54 PSYLFLRFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 98
>gi|260585154|ref|YP_003212728.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
gi|260219336|emb|CBA34689.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
Length = 156
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFF 61
+WY++ S + I R+SR + + E+ P V+ R + E+ F
Sbjct: 10 KWYVLYCNS-------QDI-QRISRRA-EDIGVEVFCPRYIKVTPRTDCRAVRQEEKPLF 60
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
P Y+ ++ + TI P GF+ G P V +S I I
Sbjct: 61 PSYLFLRFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 105
>gi|317131504|ref|YP_004090818.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
gi|315469483|gb|ADU26087.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
Length = 164
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 23/161 (14%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ Y++QV S EK ++ P E G
Sbjct: 1 MSM--YVLQVLSGAEKDVRAALL---------DQGIPAYAPEENRQIRSGGIWQTRPYLL 49
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSE--IEHIMNQVEAAVQR 116
F GYV + +Y+ I+ P V+ + L G+ + + D E I I +Q + R
Sbjct: 50 FGGYVFVVVGNVCAMYYRIRRVPGVLRWLELHAGDATALLPDEEALIRRIGSQTFESHVR 109
Query: 117 PVSSVFFEVGERVCVSDGPFASF--NGIVKNVDEEKSRVHV 155
++ FE DGP + G+ + + R V
Sbjct: 110 QLAGDTFEP------VDGPLKEYADAGVRILYNRRQRRAFV 144
>gi|295085179|emb|CBK66702.1| Transcription termination factor nusG. [Bacteroides xylanisolvens
XB1A]
Length = 159
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EKK E RL + G+++ +P ++ + R+ E P V + +
Sbjct: 3 HEKKVAE----RLDKIGIEN-----FVPVQQEIHQWSDRRKMVESVLLPMMVFVHVNPKE 53
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVS 132
+ T + +P+ + D ++ ++ + + ++S GE+V V
Sbjct: 54 RKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVV 113
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GP G + NVD KS++ V + + G
Sbjct: 114 KGPLTGLVGELVNVDG-KSKIAVRLNMLG 141
>gi|325299826|ref|YP_004259743.1| putative transcriptional regulator UpxY-like protein [Bacteroides
salanitronis DSM 18170]
gi|324319379|gb|ADY37270.1| putative transcriptional regulator UpxY-like protein [Bacteroides
salanitronis DSM 18170]
Length = 355
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 12/165 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + S+ A R R V + PS V KG+ V ++
Sbjct: 20 RWYVMLLPSSHRGLATGLKEERERRMKYGEPVFDYFAPSYVEVKKIKGKFVKTDCPLLYN 79
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV I+A D+++H ++ P+ FL G E+ P ++D +E++ ++
Sbjct: 80 YVFIRAT-VDEIFHLKRNLPQ-YNFLPKVKGEKEDYYPYLSDRAMENLKWVADSYSNVLP 137
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
V G+RV +++G F V + + V +
Sbjct: 138 VYVPKSETLVKGDRVRITEGQFKGAEATVV-IQPGAGMKDIMVSV 181
>gi|283798124|ref|ZP_06347277.1| putative transcription termination factor NusG [Clostridium sp.
M62/1]
gi|291074102|gb|EFE11466.1| putative transcription termination factor NusG [Clostridium sp.
M62/1]
gi|295091729|emb|CBK77836.1| Transcription antiterminator [Clostridium cf. saccharolyticum K10]
Length = 176
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 6/163 (3%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ E + +ES+ RL + L + + + ER+ G + FPG
Sbjct: 3 WYVLYCRPGQETEIIESLKQRLPKDALSEAFLFQC----ERLWRAGGGNWKLIRKEMFPG 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV +++ ++ + ++ ++ + PV E E + S +
Sbjct: 59 YVFLESEDSEYLSEKLEAYRGIVRVMEEPGYLIPVYREEEERLRRLCGP-EHILRLSYGY 117
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
V +GP + D + +E + G+ T +
Sbjct: 118 RENGVNHVVEGPLKGMERQIVKADWHRRFAQIETAVGGKRTVI 160
>gi|329964369|ref|ZP_08301450.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328525418|gb|EGF52466.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 180
Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 14/175 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V S EKK + RL+ G++ +P + + R+ ER P
Sbjct: 15 RQWLVAYVQSCLEKKTAQ----RLTAMGIE-----CYLPVQNEIHQWSDRRKKVERLVIP 65
Query: 63 GYVLIKAVMTDK-VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
+ + ++ + T++ + + L P+ + + ++E ++ + + S
Sbjct: 66 MMIFVHVSPQERPLPLTLQAVSRYM-VLRGESTPAIIPEEQMERFRFMLDYSPEVVEICS 124
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G+ V V GP A G + ++ KS+V + + + G V++ VEK
Sbjct: 125 TPLAQGDAVKVIKGPLAGLEGELVTLNG-KSKVAIRLDMLG-CAHVDMPIGFVEK 177
>gi|169350049|ref|ZP_02866987.1| hypothetical protein CLOSPI_00789 [Clostridium spiroforme DSM 1552]
gi|169293262|gb|EDS75395.1| hypothetical protein CLOSPI_00789 [Clostridium spiroforme DSM 1552]
Length = 165
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 17/169 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ S + + V ++ R E +P + K + F GY
Sbjct: 3 WYVLNTLSYKKNQVVFNLNKR--------KCIEAFVPQYEYYHRKT--KEYLIKPMFTGY 52
Query: 65 VLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +K + ++++ ++ VIG L + + EI ++A +S
Sbjct: 53 VFVKTELNQLEFNSLLYKMAEEKNGVIGQL-VNKETLALRKEEIRMFELLLDAYHVVRMS 111
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
+ + G+ V + +GP SF + VD ++++ R V L
Sbjct: 112 QAYLQDGKAV-IIEGPLKSFENNIVKVDRHNQYAYLDLSFMDRRIKVGL 159
>gi|325281625|ref|YP_004254167.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
gi|325281646|ref|YP_004254188.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
gi|324313434|gb|ADY33987.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
gi|324313455|gb|ADY34008.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
Length = 176
Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 16/175 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ V S EKK + + L E +P + V+ RK G
Sbjct: 13 WHAVFTASRAEKKVRDRLE---------ELGVECFLPVQTVLRQWTYRKSRVVVPVIAGL 63
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
V ++ ++V + T V+ F L + + D ++E ++ + + +++
Sbjct: 64 VFVRVGRQEQV--KVLQTKGVVAFLRLKGEAGAAVIPDKQMEDFRFLLDFSEEAVEMTNE 121
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ G+ V V G G + +V V + + G V + + VEK+
Sbjct: 122 NIKAGDLVRVVKGSLRGMEGELIRHKGVT-KVLVRIDMLG-CAMVNIPASFVEKL 174
>gi|298386585|ref|ZP_06996141.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|298260962|gb|EFI03830.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 190
Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RW + V + EKK E RLS+ G+++ + P ++ V R+ ER P
Sbjct: 25 KRWLVALVRISHEKKTSE----RLSKMGIENFL-----PVQQEVHQWSDRRKVVERVLLP 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
+ + + ++ + + L P+ + D ++ ++ + + +S
Sbjct: 76 MMIFVHVDIYEQ--KEVLTLGSISRYMVLRGESTPAVIPDEQMHRFKFMLDYSDEAINMS 133
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G ++ V GP + G + V+ KS+V V + + G
Sbjct: 134 TTPLSPGTKIKVIKGPLSGLQGELVTVNG-KSKVAVRLTMLG 174
>gi|301309061|ref|ZP_07215006.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300833087|gb|EFK63712.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 370
Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ K +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDKISPSKGLDAELSRRERRG--ETLFEYFAPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMN-QV 110
+R YV I A ++ ++K T + FL G++ P ++D E+E + V
Sbjct: 84 KRPLLYNYVFIHA--SENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMETLRWVAV 141
Query: 111 EAAVQRPVSSVF---FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ + PV G+RV ++ GPFA V V V V I
Sbjct: 142 SYSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193
>gi|293373743|ref|ZP_06620090.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|292631398|gb|EFF50029.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
Length = 243
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 26/157 (16%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+P WY ++ EKKA + + P+ V + KG++
Sbjct: 65 SPHWYALRTTYGREKKAYDY---------MTAKGITAFYPTTDTVKLIKGKRKIVTESRL 115
Query: 62 PGYVLI---KAVMTDKVYHTIKDTPKVIGF----LGTGEN----PSPVTDSEIEHIMNQV 110
P + + VY + + P + F + G P V D +++ +
Sbjct: 116 PNIFFAYGTEEQLKSFVYDNV-NLP-FLRFYYRHVHVGRRIEKIPMIVPDYQMDSLKIIC 173
Query: 111 EAAVQRPVSSV----FFEVGERVCVSDGPFASFNGIV 143
A + S+ FE G+ V V+DG F G V
Sbjct: 174 AADADNTIVSLVEVPKFEKGQLVRVTDGAFKGVIGRV 210
>gi|99080639|ref|YP_612793.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
gi|99036919|gb|ABF63531.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
Length = 193
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 47/203 (23%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y + E + + G++ V + + S V R V + + P +
Sbjct: 5 YAINTTRGKEFAVRDDLKA----MGVNPWVP-VRLGSRYVKEKRSA--VWYDAAYVPKLM 57
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF--- 122
AV+ ++ + + VIG P ++ +IE I V+ + V V
Sbjct: 58 F--AVIPAIIWRDVLEHKHVIG------KPVALSRLDIEGIPGHVKKSTGAVVPPVPGLN 109
Query: 123 -------------------------FEVGERVCVSDGPFASFNGIVKNV----DEEKSRV 153
F+ G+ + + P+ F+ V ++ +++
Sbjct: 110 DFRRAVEAEYADAERARANSEYQCQFKPGQALELLCPPWEGFSATFAKVIKHAHDDYAKL 169
Query: 154 HVEVVIFGRVTPVELAYNQVEKI 176
VE+ IFGRVTP+++ ++V+ +
Sbjct: 170 RVELEIFGRVTPLDVDPDRVKGV 192
>gi|301310806|ref|ZP_07216740.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300831206|gb|EFK61842.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 370
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVE 111
+R YV + A ++ ++K T + FL G + P ++D E++ +
Sbjct: 84 KRPLLYNYVFVHA--SEDEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAA 141
Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ V G+RV ++ GPF V V V V I
Sbjct: 142 SYSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193
>gi|224540681|ref|ZP_03681220.1| hypothetical protein BACCELL_05595 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517705|gb|EEF86810.1| hypothetical protein BACCELL_05595 [Bacteroides cellulosilyticus
DSM 14838]
Length = 178
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 17/162 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY +V+ K E I L+R ++ + P ER++ R G K +
Sbjct: 8 MHWYAFKVFY---NKVFE-IEDSLNRDKIETYI-----PCERILVERGGVKKYVRKPIIS 58
Query: 63 GYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115
+ + + K T +V + + P + + E++ M + +
Sbjct: 59 SLLFFYSTEKQALALQQKLTDRVLLYTRLVNWQKLPIAIPEREMKIFMLVTSSGEKGLDY 118
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ + GERV V+DGPF G + + + R+ V +
Sbjct: 119 FGDVPMEYSTGERVLVTDGPFKGAEGCIHRIKGNR-RLIVAI 159
>gi|323483812|ref|ZP_08089191.1| transcription antiterminator [Clostridium symbiosum WAL-14163]
gi|323692776|ref|ZP_08107004.1| hypothetical protein HMPREF9475_01867 [Clostridium symbiosum
WAL-14673]
gi|323402897|gb|EGA95216.1| transcription antiterminator [Clostridium symbiosum WAL-14163]
gi|323503218|gb|EGB19052.1| hypothetical protein HMPREF9475_01867 [Clostridium symbiosum
WAL-14673]
Length = 192
Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 7/164 (4%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++Q + E + + S +S + E+ + G E+ FPGY
Sbjct: 3 WYVLQCRTGREGEIIRSCRQHISA----DALKEVFSFRCERLWRTDGVWKLVEKEMFPGY 58
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V +++ DK+ ++ K++ + V + E E + ++ S ++
Sbjct: 59 VFLESSRPDKLSEELEAYRKILRVMEEPGYLISVYEEE-EEYLRKLCGERHYLKMSFGYK 117
Query: 125 VGERVC--VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
E+ +++GP + D + + + + + V
Sbjct: 118 DKEKGRSFITEGPLKGLENQIAKYDWHRRFAQLRIPVSRKEVVV 161
>gi|309797734|ref|ZP_07692119.1| transcription termination factor NusG [Escherichia coli MS 145-7]
gi|308118654|gb|EFO55916.1| transcription termination factor NusG [Escherichia coli MS 145-7]
Length = 169
Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-- 59
WY++Q + ++ L R P E R + ++ R
Sbjct: 1 MEWYVLQFTTTRF-----AAVFAHLERLN-----FSYFCPMETERYRRPDKIISYRERRL 50
Query: 60 -FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
FPGY+ I+A + TI P V F+ G P PV + + ++ +
Sbjct: 51 PLFPGYLFIQADFEEVHSTTITAIPYVQRFISFGGEPLPVPEDVMAELLYR 101
>gi|260428101|ref|ZP_05782080.1| putative NusG antitermination factor [Citreicella sp. SE45]
gi|260422593|gb|EEX15844.1| putative NusG antitermination factor [Citreicella sp. SE45]
Length = 222
Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 24/175 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY + E+ A + R + P + +G+ ERR+ PGY
Sbjct: 45 WYALLCRPQQERHAESWLAARGVYA---------FHPVTSRRTRVRGKLREYERRYLPGY 95
Query: 65 VLIKAVMTDKVYHTIKDTPKVIG----------FLGTGENPSPVTDSEIEHIMNQVEAAV 114
V + + H + +P + G LG + + + + + + E
Sbjct: 96 VFARFDGIP-IPHRVLTSPFLTGALCRSDGQWGVLGP-KRLAALHEMRARDLRQEDERQE 153
Query: 115 QRPVSSVFFEVGERV--CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
Q+ ++ V GPF + V +D V V +FGR V
Sbjct: 154 QKRRAAAARRVRAGERAMFRAGPFEGMSCEVVEIDAAGG-VKVRFDLFGRENSVT 207
>gi|160891065|ref|ZP_02072068.1| hypothetical protein BACUNI_03512 [Bacteroides uniformis ATCC 8492]
gi|156859286|gb|EDO52717.1| hypothetical protein BACUNI_03512 [Bacteroides uniformis ATCC 8492]
Length = 243
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 26/157 (16%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+P WY ++ EKKA + + P+ V + KG++
Sbjct: 65 SPHWYALRTTYGREKKAYDY---------MTAKGITAFYPTTDTVKLIKGKRKIVTESRL 115
Query: 62 PGYVLI---KAVMTDKVYHTIKDTPKVIGF----LGTGEN----PSPVTDSEIEHIMNQV 110
P + + VY + + P + F + G P V D ++E +
Sbjct: 116 PNIFFAYGTEEQLKTFVYDNV-NLP-FLRFYYRHVHVGRRIEKIPMIVPDYQMESLKIIC 173
Query: 111 EAAVQRPVSSV----FFEVGERVCVSDGPFASFNGIV 143
A + S+ FE G+ V V DG F G V
Sbjct: 174 AADADNTIVSLIEVPKFEKGQLVRVIDGAFKGVIGRV 210
>gi|11498148|ref|NP_069373.1| transcription antitermination protein NusG [Archaeoglobus fulgidus
DSM 4304]
gi|2650084|gb|AAB90698.1| LSU ribosomal protein L24A (rpl24A) [Archaeoglobus fulgidus DSM
4304]
Length = 150
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 31/154 (20%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R++ V+ +N E+ + + L V I P E G
Sbjct: 3 RFFAVKTTANQERVVANLMDMAARKHNL--KVYSILAPKE-----------------LKG 43
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y++++A D + I+ P V G + ++ SEIEH + +AA Q
Sbjct: 44 YIIVEAETPDDLLKAIRGLPHVKGVVKGE-----ISFSEIEHFLTPKKAAEQ-------I 91
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G++V + GPF IVK VDE K+ + VE+
Sbjct: 92 REGDKVEIVSGPFKGEMAIVKRVDEAKNEITVEL 125
>gi|240140460|ref|YP_002964939.1| hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens
AM1]
gi|240010436|gb|ACS41662.1| Hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens
AM1]
Length = 187
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
+ VQ V ++ F VG+ V +S+G FA+F ++ VD ++ R V V +FGR P E
Sbjct: 120 KKAGKGVQDFVETL-FSVGDEVRISNGAFATFMAKIEGVDVKRGRYTVAVDVFGRPVPFE 178
Query: 168 LAYNQVE 174
+A +E
Sbjct: 179 IAEESLE 185
>gi|237722567|ref|ZP_04553048.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448377|gb|EEO54168.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 165
Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EKK E RLS+ G+D +P ++ + R+ + P V + +
Sbjct: 3 HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVS 132
++ T + P+ + D ++ ++ + + ++ GE+V V
Sbjct: 54 RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVI 113
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GP + G + V KS++ V + + G
Sbjct: 114 KGPLSGLVGELVTVGG-KSKIAVRLNMLG 141
>gi|237718366|ref|ZP_04548847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229452299|gb|EEO58090.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 165
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EKK E RLS+ G+D +P ++ + R+ + P V + +
Sbjct: 3 HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVS 132
++ T + P+ + D ++ ++ + + ++ GE+V V
Sbjct: 54 RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLAHGEKVRVI 113
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GP + G + V KS++ V + + G
Sbjct: 114 KGPLSGLVGELVTVGG-KSKIAVRLNMLG 141
>gi|298375194|ref|ZP_06985151.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298267694|gb|EFI09350.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 370
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVE 111
+R YV + A ++ ++K T + FL G + P ++D E++ +
Sbjct: 84 KRPLLYNYVFVHA--SEDEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAA 141
Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ V G+RV ++ GPF V V V V I
Sbjct: 142 SYSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193
>gi|293372803|ref|ZP_06619183.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
gi|292632228|gb|EFF50826.1| transcription termination/antitermination factor NusG [Bacteroides
ovatus SD CMC 3f]
Length = 165
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
EKK E RLS+ G+D +P ++ + R+ + P V + +
Sbjct: 3 HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVS 132
++ T + P+ + D ++ ++ + + ++ GE+V V
Sbjct: 54 RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVI 113
Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
GP + G + V KS++ V + + G
Sbjct: 114 KGPLSGLVGELVTVGG-KSKIAVRLNMLG 141
>gi|309777816|ref|ZP_07672762.1| transcription termination/antitermination factor NusG
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914377|gb|EFP60171.1| transcription termination/antitermination factor NusG
[Erysipelotrichaceae bacterium 3_1_53]
Length = 88
Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+VQV S EKK E +S+ +++E IP G+ + F
Sbjct: 26 MKWYVVQVRSGHEKKIAEKCRTMISK----DILSECFIPEYIHKKKYMGKWHDVRDILFK 81
Query: 63 GYVL 66
GY+
Sbjct: 82 GYIF 85
>gi|13476620|ref|NP_108190.1| hypothetical protein mlr7998 [Mesorhizobium loti MAFF303099]
gi|14027382|dbj|BAB53651.1| mlr7998 [Mesorhizobium loti MAFF303099]
Length = 201
Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 30/176 (17%)
Query: 26 LSRSGLDHLVTEITIPS--ERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTP 83
++ + E P + ++ R ++ F GY+ + + +KD
Sbjct: 22 VAERSIRDAGFECYYPRMRKEIIHHRTNVRIVRRFPLFTGYIFV--ALPSANGEYLKDCD 79
Query: 84 KVIGFL---GTGENPSPVTDSEIE-----------------HIMNQVEAAVQRPVSSVFF 123
+ L G P V +E I ++E +R ++ F
Sbjct: 80 GLGRLLSYDGEFGKPWQVPTGAVESYMRAEADLEFDDTKESRIKRKLEGKTRRETIAMTF 139
Query: 124 EVGERVCVSDG-----PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ + V A F+G V +V + V + +FGR+ E + +E
Sbjct: 140 PEGQAIRVKQDWQHKHMLAGFHGEVVSV-TGRGTVKSMIELFGRLVAAEFDADDIE 194
>gi|218130761|ref|ZP_03459565.1| hypothetical protein BACEGG_02352 [Bacteroides eggerthii DSM 20697]
gi|217987105|gb|EEC53436.1| hypothetical protein BACEGG_02352 [Bacteroides eggerthii DSM 20697]
Length = 187
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 16/176 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V S EK+ RL+ G++ +P + + R+ +R P
Sbjct: 16 RQWLVAYVQSCLEKRTAR----RLAAMGIE-----CYLPIQSEIHQWSDRRKRVDRLIIP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + ++ V L P+ + D ++ ++ + +
Sbjct: 67 MMIFVHVTPQERA--LPLSLQAVNRYMVLRGESAPAVIPDEQMAQFRFMLDYSQEAVEMC 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S G+ V V GP A G + + KS+V V + G V++ VEK
Sbjct: 125 SAPLAPGDAVKVIKGPLAGLEGELV-ILNGKSKVAVRLDKLGYAH-VDMPVGFVEK 178
>gi|168698398|ref|ZP_02730675.1| transcription antitermination protein nusG [Gemmata obscuriglobus
UQM 2246]
Length = 177
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 15/176 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW ++ + EK E + + +G+ + +P VS K + ++ FPG
Sbjct: 12 RWAALRTAARWEKAVTEQL----AAAGVP-----VFLPLLTRVSRTKSKTQTAQLPVFPG 62
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS--EIEHIMNQVEAAVQRPVSSV 121
YV K+I L +P + D + ++ + +R V
Sbjct: 63 YVFCGEREYRDSTRVPPSCRKLIAQLLRAPDPDQLKDELRSVADLLANRQLLQER----V 118
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
+ +G+ V + GP A G + + RV +EV G + +EK V
Sbjct: 119 YGVIGDTVRIVGGPLAGSLGTILRLKPGTRRVLIEVSFLGARMEATVEERLLEKAV 174
>gi|325298353|ref|YP_004258270.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
gi|324317906|gb|ADY35797.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
Length = 500
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 23/168 (13%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V+ + E K VE + + +++ + EI P+ V+V + + ++ F G
Sbjct: 11 RWYVVRTKRHQESKLVELLEKQKAQTK---NILEIYAPTHTTVNVHQDSD-DKQKPLFAG 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAV-- 114
V + A D + + +K+ G G + +S++ + E
Sbjct: 67 IVFVLAT-QDALMNFMKEHSLDAGMQYERKNEKGERTRMCVIPESQMRAFRDYNENYADK 125
Query: 115 ----QRPVSSVFF-----EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ P S F E E V V DGP A G + EK V
Sbjct: 126 VIVLEHPYSDYAFNTKTGEPNEIVRVIDGPLAGCEGYICRFRHEKRLV 173
>gi|298378114|ref|ZP_06988049.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298264982|gb|EFI06660.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 232
Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ K +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDKINPSKGLDAELSRRERRG--ETLFEYFAPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVE 111
+R YV I A ++ ++K T + FL G++ P ++D E++ +
Sbjct: 84 KRPLLYNYVFIHA--SENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMDTLRWVAA 141
Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ V G+RV ++ GPFA V V V V I
Sbjct: 142 SYSNELPVYVPDSGRLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193
>gi|150010377|ref|YP_001305120.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149938801|gb|ABR45498.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 351
Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
RWY++ + K + + R+ L + PS + R+G V + R
Sbjct: 17 RWYVLSLPACHKGPAKGLKKELDRRVR---LGEPTFDFFAPSFVEMRRREGHLVETHRPL 73
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEA-AVQ 115
YV I++ +++ +D P + FL G G P V+D E+E++ + + +
Sbjct: 74 LYNYVFIRSS-VYEIFRLKRDFP-LYNFLPSVDGRGSYPF-VSDREMENLRWVARSYSDE 130
Query: 116 RPV---SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVV 158
PV + + G+R+ ++DG F +V + V V V
Sbjct: 131 LPVYVPEAGYLRKGDRIRITDGRFKGVEASVVIQPGVGEREVMVCVD 177
>gi|255012360|ref|ZP_05284486.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
Length = 351
Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
RWY++ + K + + R+ L + PS + R+G V + R
Sbjct: 17 RWYVLSLPACHKGPAKGLKKELDRRVR---LGEPTFDFFAPSFVEMRRREGHLVETHRPL 73
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEA-AVQ 115
YV I++ +++ +D P + FL G G P V+D E+E++ + + +
Sbjct: 74 LYNYVFIRSS-VYEIFRLKRDFP-LYNFLPSVDGRGSYPF-VSDREMENLRWVARSYSDE 130
Query: 116 RPV---SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVV 158
PV + + G+R+ ++DG F +V + V V V
Sbjct: 131 LPVYVPEAGYLRKGDRIRITDGRFKGVEASVVIQPGVGEREVMVCVD 177
>gi|150006795|ref|YP_001301538.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|150008233|ref|YP_001302976.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149935219|gb|ABR41916.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149936657|gb|ABR43354.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 370
Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVE 111
+R YV + A ++ ++K T + FL G + P ++D E++ +
Sbjct: 84 KRPLLYNYVFVHA--SENEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAA 141
Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ V G+RV ++ GPF V V V V I
Sbjct: 142 SYSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193
>gi|150007203|ref|YP_001301946.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149935627|gb|ABR42324.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 367
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVE 111
+ YV + A ++ +K T + FL G + P ++D E++ +
Sbjct: 84 RQPLLYNYVFVHA--SEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAA 141
Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ V G+RV ++ GPF V V V V I
Sbjct: 142 SYSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193
>gi|237734244|ref|ZP_04564725.1| nusG antitermination factor [Mollicutes bacterium D7]
gi|229382804|gb|EEO32895.1| nusG antitermination factor [Coprobacillus sp. D7]
Length = 166
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 20/176 (11%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ E K + L R GLD + +I R+ K N+ +
Sbjct: 1 MKDNWYVLFALVAKENK----LCSVLRRKGLDAFIPKIEY-------YRRDIKGNTLKML 49
Query: 61 FPGYVLIKAVMT----DKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
FPGY+ +++ M D + + + + G + + + + D EIE + N++ +
Sbjct: 50 FPGYIFVRSEMKQSDFDNLLYELGEQRD--GLIKQLKDDGVTALRDEEIE-MFNKLLNSE 106
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
S F + V GP + + +D+ +++ R L
Sbjct: 107 GILEMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAILDIEFLNRHILAGLEI 162
>gi|307943758|ref|ZP_07659102.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
gi|307773388|gb|EFO32605.1| putative transcription termination factor NusG [Roseibium sp.
TrichSKD4]
Length = 200
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 52 RKVNSERRFFPGYVLIKAVM-TDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMN 108
+ +++ + GY+ + T V I V G L + P V + + I++
Sbjct: 71 KMIDNSQPLIRGYLFVCTDFSTGSVVDEILSCGCVSGLLSFRADKYPHRVPSARVVDIID 130
Query: 109 QVEAAVQ--RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
E +P ++ F++G +V + GP F+ +V D K+RV EV
Sbjct: 131 HCEQLQTGGKPQKAIGFDIGSKVRLIAGPMEGFSAVVTGYDLAKARVQAEV 181
>gi|313157678|gb|EFR57089.1| transcription termination/antitermination factor NusG [Alistipes
sp. HGB5]
Length = 180
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 4 RWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY ++ YS E A + G++ +P G++
Sbjct: 12 QWYAIRVTYSR-EMAAKSYLD----SIGIESY-----VPMHFAERTYGGKRRKVWEPLIH 61
Query: 63 GYVLIKAVMTDKVYHTIKDTPKV-IGFL--GTGENPSPVTDSEIEHIMN----QVEAAVQ 115
+ I+ + IK T + I ++ ++P+ + + +++ M Q E
Sbjct: 62 NLLFIRT--SADRLREIKATTTLPIRYIMDRESKSPTVIPERQMQDFMAVVATQNEHVEI 119
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
V E G+ V V++G FA G K V V I
Sbjct: 120 VAPQDVDLEKGDPVRVTEGIFAGIEGRYI---RHKGHSKVAVAI 160
>gi|167753455|ref|ZP_02425582.1| hypothetical protein ALIPUT_01729 [Alistipes putredinis DSM 17216]
gi|167658080|gb|EDS02210.1| hypothetical protein ALIPUT_01729 [Alistipes putredinis DSM 17216]
Length = 181
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++V+ + E + +LS+ G+ + P +V +K+ +
Sbjct: 10 WYALKVF--Y-NRVFE-LEKQLSQEGVRSYI-----PLLHEDTVAGDKKIRKRKPAVSSL 60
Query: 65 VLIK------AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
+ I+ + D++ P + F + P+ + D E+E M A
Sbjct: 61 MFIRQSEHYLLELQDRMKA---SCPFMAYFDRETKKPAVIPDREMELFMQITSADTSDLE 117
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
++ + G++V V+ GPF G +K + R+ V +
Sbjct: 118 YFSDEAIDYRSGDKVRVTGGPFKGAEGYIKRI-RGNRRLVVALE 160
>gi|218961752|ref|YP_001741527.1| hypothetical protein CLOAM1470 [Candidatus Cloacamonas
acidaminovorans]
gi|167730409|emb|CAO81321.1| hypothetical protein CLOAM1470 [Candidatus Cloacamonas
acidaminovorans]
Length = 191
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 15/174 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W +V CEKK + +P V + RKV+ + FP
Sbjct: 23 RKWVVVHTKPRCEKKLADYAKQHQITY---------YLPQYTSKRVYQRRKVDVNKVLFP 73
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV + K I + FL + E++ I + VQ ++
Sbjct: 74 SYVFVGIDFKGKQELLISG--YTVNFLKVNAQKELI--DELQAIYYGRQKNVQME-PGLW 128
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
E G V + +GP G+V++ + V ++V I + V++ ++ I
Sbjct: 129 LEKGLEVEIVNGPLKGIRGVVEDQSKLTE-VRLQVNILKQAVLVKVRTQDIKII 181
>gi|325297257|ref|YP_004257174.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
gi|324316810|gb|ADY34701.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
Length = 525
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 56/169 (33%), Gaps = 25/169 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++V+ E + I + + E+ P+ V VR G F G
Sbjct: 12 RWFLVRTKPGHEPELCARIEREKDKL---RNILEVYYPTHTKVYVRLG-DNEQRLPLFDG 67
Query: 64 YVLIKAVMTDKVYHT--------IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV- 114
YV + A + V I+ K P + +S++ + E
Sbjct: 68 YVFVLATQSALVEFLRDNCSDAYIRYNRKRTE--EEKATPCTIPESQMRAFRDYNENYAD 125
Query: 115 -----QRPVSSVFF-----EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+RP S F E E V V DGP A G + +K V
Sbjct: 126 KVIVLERPYSDYAFNAKEGEANEIVRVVDGPLAGQEGYICRFHRKKGLV 174
>gi|167755356|ref|ZP_02427483.1| hypothetical protein CLORAM_00870 [Clostridium ramosum DSM 1402]
gi|167704295|gb|EDS18874.1| hypothetical protein CLORAM_00870 [Clostridium ramosum DSM 1402]
Length = 166
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 20/176 (11%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M WY++ E K + L R GLD + +I R+ K N+ +
Sbjct: 1 MKDNWYVLFALVAKENK----LCSVLRRKGLDAFIPKIEY-------YRRDIKGNTLKML 49
Query: 61 FPGYVLIKAVMT----DKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
FPGY+ +++ M D + + + + G + + + + D EIE + N++ +
Sbjct: 50 FPGYIFVRSEMKQSDFDNLLYELGEQRD--GLIKQLKDDGVTALRDEEIE-MFNKLLNSE 106
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
S F + V GP + + +D+ +++ R L
Sbjct: 107 GILEMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAVLDIEFLNRHILAGLEI 162
>gi|150007078|ref|YP_001301821.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|255015297|ref|ZP_05287423.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
gi|256840235|ref|ZP_05545743.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262381072|ref|ZP_06074210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298377498|ref|ZP_06987450.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
gi|301311259|ref|ZP_07217187.1| putative transcription termination factor NusG [Bacteroides sp.
20_3]
gi|149935502|gb|ABR42199.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|256737507|gb|EEU50833.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262296249|gb|EEY84179.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298265517|gb|EFI07178.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
gi|300830833|gb|EFK61475.1| putative transcription termination factor NusG [Bacteroides sp.
20_3]
Length = 220
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 13/170 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
WYI V + EK + + R++ E+ I S++ + + G++ +R F
Sbjct: 39 KHWYIAIVNNKSEKLCRDKLEKRIASQPEGEKDYEVYIASQKEMCLLPSGKRKQVDRIVF 98
Query: 62 PGYVLIKAVMTDKVYHT-IKDTPKVIGFL-------GTGENPSP-VTDSEIEHIMNQVEA 112
V I+ TD + I P + F+ G P + D ++ + ++
Sbjct: 99 RSIVFIRC--TDVLRRKEIVHLPYIKRFMVNIAGERSGGIRPVAFIPDEQMVKLRRMLDD 156
Query: 113 AVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + + +G RV ++ G G V V++ + V + G
Sbjct: 157 SEEPVIIDPRPLPLGARVRINGGKLHGLEGNVLEVEDGNLNFVIRVDLLG 206
>gi|254509729|ref|ZP_05121796.1| hypothetical protein RKLH11_261 [Rhodobacteraceae bacterium KLH11]
gi|221533440|gb|EEE36428.1| hypothetical protein RKLH11_261 [Rhodobacteraceae bacterium KLH11]
Length = 222
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 14 CEKKAVESIGGRLSRSG----LDHLV-----TEITIPSERVVSVRKG---RKVNSERRFF 61
+A + R++ +G L + E+ +P ++V+ + K +
Sbjct: 37 YRDRAGRACKRRVNGTGDRVFLPEYILRRAGFEVFLPIKKVLRRKNRYTPEKALISQPLL 96
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV------Q 115
++ + + + +H + + + G +GTG +P + + +M Q +
Sbjct: 97 VDWLFVGWPVGESRWHDLMELDVISGVMGTGGHPIEFPAARVMSLMRQWGGGHLSSECRR 156
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ F VG+ V GP + V+ VD V + + G E+ + +E
Sbjct: 157 YLKTGSEFAVGDTARVIAGPLDGVH--VRVVDVSGPTVKAALGMLGSEVVTEIRGDLLEV 214
Query: 176 I 176
I
Sbjct: 215 I 215
>gi|92118806|ref|YP_578535.1| NusG antitermination factor [Nitrobacter hamburgensis X14]
gi|91801700|gb|ABE64075.1| transcription antitermination protein nusG [Nitrobacter
hamburgensis X14]
Length = 140
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M R W + ++ E I + +P+ + G+ +ER
Sbjct: 1 MAERYWGACRTFTGREHLVRAKIEEMDRGA---------FLPTFVRSWIAGGKLSVAERP 51
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
PGYV +A D + ++D VIG L G +++ ++ +
Sbjct: 52 AVPGYVFFRASQDD--WSPVQDIDGVIGVLANGGRAMRISNDDMASL 96
>gi|303244500|ref|ZP_07330835.1| NusG antitermination factor [Methanothermococcus okinawensis IH1]
gi|302485198|gb|EFL48127.1| NusG antitermination factor [Methanothermococcus okinawensis IH1]
Length = 146
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 32/172 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ + EK E + R + +D + I GY+
Sbjct: 3 FAIRTTTGQEKNVAEFLASRAEKEKID--IYSIL-----------------ATEDLKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A V ++ T KV G + P ++ E+EH+++ +
Sbjct: 44 LVEAPNKGAVEDLVRKTFKVKGIV-----PGEISIDELEHLLSPTKIIESIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+ V + GPF IV VD+ K + +E++ P+ + QV KIV
Sbjct: 92 GDVVELVAGPFKGEKAIVTRVDKHKEEITLELMEAAVPIPITVGIEQV-KIV 142
>gi|256840830|ref|ZP_05546338.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738102|gb|EEU51428.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 371
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ---VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + +++ R R G + E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSRGLDAELSRRERRG--ETLFEYFAPSYVEVRKVDGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSP--VTDSEIEHIMNQV 110
+ R YV I++ ++++ +K T + F + +G P ++DSE+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFR-MKQTLPLYNFLPRVSSGGTPHFPYLSDSEMGNLRWVA 143
Query: 111 EAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
E+ V G+RV ++ G FA V
Sbjct: 144 ESYSNELPVYVPDSGRLLKGDRVRITSGYFAGMEAEV 180
>gi|256842699|ref|ZP_05548189.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256735699|gb|EEU49043.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 210
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 21/173 (12%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + +++ R R G + E PS G+ VN+
Sbjct: 31 RWYVLTLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVNT 88
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVE 111
+R YV + A ++ +K T + FL G + P ++D E++ +
Sbjct: 89 KRPLLYNYVFVHA--SEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAA 146
Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ V G+RV ++ GPF V V V V I
Sbjct: 147 SYSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 198
>gi|256839226|ref|ZP_05544736.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256740145|gb|EEU53469.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 354
Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ C K + + L R L + PS + R+GR V + R
Sbjct: 17 RWYVLS-LPACHKGPAKGLEKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEA-AVQRP 117
YV I++ +++ +D P + FL G G P V+D E+E++ + + + P
Sbjct: 76 NYVFIRSS-VYEIFRLKRDFP-LYNFLPSVDGRGSYPF-VSDREMENLRWVARSYSDELP 132
Query: 118 V---SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVV 158
V + + G+R+ ++DG F +V + V V V
Sbjct: 133 VYVPEAGYLRKGDRIRITDGRFKGVEASVVIQPGVGEREVMVCVD 177
>gi|46204856|ref|ZP_00209587.1| COG0250: Transcription antiterminator [Magnetospirillum
magnetotacticum MS-1]
Length = 63
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
F +G+ V ++DG FA+F V+ VD ++ R V V +FGR P E+A +E
Sbjct: 6 VETLFAIGDEVRITDGGFATFMAKVEKVDVKRGRYTVAVDVFGRPVPFEIAEESLE 61
>gi|262382326|ref|ZP_06075463.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295204|gb|EEY83135.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 354
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
RWY++ + K + + R+ L + PS + R+GR V + R
Sbjct: 17 RWYVLSLPACHKGPAKGLRKELDRRVR---LGEPTFDFFAPSFVEMHRREGRLVETHRPL 73
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEA-AVQ 115
YV I++ +++ +D P + FL G G P V+D E+E++ + + +
Sbjct: 74 LYNYVFIRSS-VYEIFRLKRDFP-LYNFLPSVDGRGSYPF-VSDREMENLRWVARSYSDE 130
Query: 116 RPV---SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVV 158
PV + + G+R+ ++DG F +V + V V V
Sbjct: 131 LPVYVPEAGYLRKGDRIRITDGRFKGVEASVVIQPGVGEREVMVCVD 177
>gi|169350273|ref|ZP_02867211.1| hypothetical protein CLOSPI_01017 [Clostridium spiroforme DSM 1552]
gi|169293056|gb|EDS75189.1| hypothetical protein CLOSPI_01017 [Clostridium spiroforme DSM 1552]
Length = 165
Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ S+ ++ + ++ + E IPS V K + + F Y
Sbjct: 3 WYVLYTLSHRTQRILGNLNKKKE--------LEAFIPSYEVCHRYT--KEITIKPMFNNY 52
Query: 65 VLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ IK ++ + ++T+ +D +I L + S +T EIE N V +
Sbjct: 53 IFIKTMLNQEEFNTLLFNMKEDNNGLIRQLKNADT-SALTKKEIE-FFNLVLDSKHVVRL 110
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
S ++ V GP ++ + VD+ ++++ F R ++L + + K
Sbjct: 111 SHGYQENGITRVISGPLVAYENHIVKVDKHNCCAFLDLIFFDR--RIKLGIDILGK 164
>gi|317474286|ref|ZP_07933562.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
gi|316909596|gb|EFV31274.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
Length = 187
Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 15/162 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W + V S EK+ RL+ G++ +P + + R+ +R P
Sbjct: 16 RQWLVAYVQSCLEKRTAR----RLAAMGIE-----CYLPIQSEIHQWSDRRKRVDRLIIP 66
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG--FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + ++ V L P+ + D ++ ++ + +
Sbjct: 67 MMIFVHVTPQERA--LPLSLQAVNRYMVLRGESAPAVIPDEQMAQFRFMLDYSQEAVEMC 124
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S G+ V V GP G + + KS+V V + G
Sbjct: 125 SAPLAPGDAVKVIKGPLTGLEGELV-ILNGKSKVAVRLDKLG 165
>gi|301308465|ref|ZP_07214419.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300833935|gb|EFK64551.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 354
Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
RWY++ + K + + R+ L + PS + R+GR V + R
Sbjct: 17 RWYVLSLPACHKGPAKGLRKELDRRVR---LGEPTFDFFAPSFVEMHRREGRLVETHRPL 73
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEA-AVQ 115
YV I++ +++ +D P + FL G G P V+D E+E++ + + +
Sbjct: 74 LYNYVFIRSS-VYEIFRLKRDFP-LYNFLPSVDGRGSYPF-VSDREMENLRWVARSYSDE 130
Query: 116 RPV---SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVV 158
PV + + G+R+ ++DG F +V + V V V
Sbjct: 131 LPVYVPEAGYLRKGDRIRITDGRFKGVEASVVIQPGVGEREVMVCVD 177
>gi|160891859|ref|ZP_02072862.1| hypothetical protein BACUNI_04316 [Bacteroides uniformis ATCC 8492]
gi|317480339|ref|ZP_07939440.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|156858337|gb|EDO51768.1| hypothetical protein BACUNI_04316 [Bacteroides uniformis ATCC 8492]
gi|316903514|gb|EFV25367.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 200
Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 14/164 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-TEITIPSERVVSVRKGRKVNSERRFF 61
W+ + S E R+ L+ + E +P+ V+S K R+ S
Sbjct: 28 KYWFAARTLSKQEFAVK----KRIENLNLEEGIDVECYLPTRTVISQLKYRRKRSVVPVA 83
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
G + I A T + I + V F + + V D +++ M ++ +
Sbjct: 84 RGLIFIHA--TKQSACDIHNVYGVQVFYMKDFSTHSMLVVPDKQMQDFMFVMDLNPEGVC 141
Query: 119 SSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
VG++V V G F+ G + E ++ +V + I G
Sbjct: 142 FDNEPLTVGKKVTVVKGEFSGIEG---EIATEANKTYVVIRITG 182
>gi|325298850|ref|YP_004258767.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
gi|324318403|gb|ADY36294.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
Length = 519
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 31/172 (18%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWYIV+ E+K E + ++S + E+ P+ V++R + F G
Sbjct: 11 RWYIVRTRPRQERKLAELLEQYKAKSV---NILEVYAPTHTTVNIRH-EGSERQAPLFVG 66
Query: 64 YVLIKAV-------MTDKVYHTI----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
+ + A M + + I + K G + + ++ + E
Sbjct: 67 TIFVLATQKALTDFMEEHSLNGILQYERKNGK-----GEKTRLRVIPEEQMRAFRDYNEN 121
Query: 113 AV------QRPVSSVFF-----EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+RP + F E E V V DGP A G + +K V
Sbjct: 122 YADRVIVLERPYTDYAFNAKSDEPNEIVRVIDGPLAGRKGYICRFRRDKRLV 173
>gi|2447002|dbj|BAA22443.1| NusG-like protein [Streptomyces griseus]
Length = 38
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
+ ++ + +V V IFGR TPVEL+++Q++K
Sbjct: 1 MQATINEINADSKKVKGLVEIFGRETPVELSFDQIQK 37
>gi|262382524|ref|ZP_06075661.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295402|gb|EEY83333.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 365
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 25/175 (14%)
Query: 4 RWYIVQ---VYSNCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + K +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAVGGYDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDT-------PKVIGFLGTGENPSPVTDSEIEHIMNQ 109
+ YV I A ++ +K P+V +G ++D E+E +
Sbjct: 84 RKPLLYNYVFIHA--SENEIFRLKRIMPLYNLLPRVS--VGEHSYFPYLSDHEMETLRWM 139
Query: 110 VEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
E+ V G+RV ++ G F V V V V I
Sbjct: 140 AESYSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193
>gi|301310514|ref|ZP_07216453.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300832088|gb|EFK62719.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 196
Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 17/171 (9%)
Query: 4 RWYIVQ--VYSNCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
RWY++ K R + E PS G+ VN++R
Sbjct: 26 RWYVLTLPTAGGGRDKISPSKGLDVELSRRERRGEALFEYFSPSYVEARKVGGKMVNTKR 85
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMNQVEAA 113
YV I A ++ ++K T + FL G++ P ++D E+E + +
Sbjct: 86 PLLYNYVFIHA--SENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMETLRWVAASY 143
Query: 114 VQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
V G+RV ++ GPFA V V V V I
Sbjct: 144 SNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193
>gi|282164804|ref|YP_003357189.1| putative ribosomal protein L26e [Methanocella paludicola SANAE]
gi|282157118|dbj|BAI62206.1| putative ribosomal protein L26e [Methanocella paludicola SANAE]
Length = 162
Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ +N E+ I + G D + I +P E GYV
Sbjct: 17 FAVKTTANQERSVANLIAMVARKEGYD--IRSILVPEE-----------------LKGYV 57
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L+++ M + V HTI++ P + + +E++H +
Sbjct: 58 LVESPMHEIVEHTIQNIPHAKAVVKGAS-----SIAEVQHFLAP-------KPVVTGISE 105
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
G+ V + GPF VK VDE K + VE+
Sbjct: 106 GDIVELISGPFKGERARVKRVDETKEEITVELS 138
>gi|45476503|ref|NP_995418.1| transcription antiterminator [Yersinia pestis biovar Microtus str.
91001]
gi|45357214|gb|AAS58609.1| transcription antiterminator [Yersinia pestis biovar Microtus str.
91001]
Length = 151
Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVSVRKGRKVNSERR-FFP 62
WY++ C + VE I R+ ++ + P +V + R V E + FP
Sbjct: 4 WYVLY----CNNQDVERITRRVEGLNVE-----VFCPRYIKVTPRKDCRAVRQEEKVLFP 54
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
Y+ + + TI P GF+ G P V S I I
Sbjct: 55 NYLFLCFDVNITHTSTITSIPGAHGFVSFGSTPCTVPKSVITAI 98
>gi|218884416|ref|YP_002428798.1| Putative transcription antitermination protein nusG
[Desulfurococcus kamchatkensis 1221n]
gi|218766032|gb|ACL11431.1| Putative transcription antitermination protein nusG
[Desulfurococcus kamchatkensis 1221n]
Length = 163
Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 32/174 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
Y V+ E IG R+ G + + I IP
Sbjct: 15 YAVKTTLGRELDTALIIGMRIDEMRARGEETSIGSIIIP-----------------PNVR 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV I+ ++Y I D + P V+ E E ++ +
Sbjct: 58 GYVFIEVERLGELYKVISDIRYI-----KAGRPIKVSYEEFEKLLKPKPVIEE------- 105
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
VG+ V ++ GPF + +D K+ + V ++ P+ + + V+KI
Sbjct: 106 LNVGDEVEITRGPFRGMRARIAGIDRNKNMLTVNILEAAFTIPITIPGDYVKKI 159
>gi|254501341|ref|ZP_05113492.1| hypothetical protein SADFL11_1378 [Labrenzia alexandrii DFL-11]
gi|222437412|gb|EEE44091.1| hypothetical protein SADFL11_1378 [Labrenzia alexandrii DFL-11]
Length = 202
Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 18/180 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN---SERRFF 61
W +V+ NCE +A ES+ S +GL + P V+ + R N R
Sbjct: 31 WIVVRSNPNCESRAAESL----SAAGLIAWL-----PMLPVLR-KNSRTRNEFDKSRPLC 80
Query: 62 PGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQV-EAAVQRP 117
Y+ + + + V L E P V +++ I+ Q A +
Sbjct: 81 TRYLFVALDRYKGQSTSEVVVCDGVEKVLSFDEENRPHIVPKAQMRVIVEQCWNAITEGN 140
Query: 118 VSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+S V F++G + F G V DE K V V +FGR V++A ++V+ +
Sbjct: 141 LSKVKHFDIGAVFGLLADEFDGVTGTVTGYDEAKGIVEGLVPMFGREMAVKVAVDKVKAV 200
>gi|146304396|ref|YP_001191712.1| transcription antitermination protein NusG [Metallosphaera sedula
DSM 5348]
gi|145702646|gb|ABP95788.1| LSU ribosomal protein L24A [Metallosphaera sedula DSM 5348]
Length = 153
Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+V E + R+ +G+ V I +P GYV
Sbjct: 10 YAVKVTGGQEISVAIMLEERIKTNGIGD-VYSIIVP-----------------PGLKGYV 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++++ V I V G P V +I ++++ + +
Sbjct: 52 IVESSGPHVVKFIIAGIRHVRGV-----APGLVPKDDIMKMVSKKQTGP-------SIKT 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V GPF V + + ++ V + ++ V + +Q+ +
Sbjct: 100 GDMVEVVSGPFRGMQAQVMSYNADRGEVVLNILESAFPLQVTIPVDQIRPV 150
>gi|118431766|ref|NP_148437.2| transcription antitermination protein NusG [Aeropyrum pernix K1]
gi|152031650|sp|Q9Y9W3|NUSG_AERPE RecName: Full=Putative transcription antitermination protein nusG
gi|116063088|dbj|BAA81187.2| putative transcription antitermination protein NusG [Aeropyrum
pernix K1]
Length = 151
Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 35/176 (19%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
R+Y + V S E I R GLD + I +P
Sbjct: 7 ARFYAILVTSGAEVNVATIIAERARALGLD--IRSIIVP-----------------PRIK 47
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV+++A VY + V P + E+ + V+ V
Sbjct: 48 GYVILEAHDPGDVYDATRGLRHVKR-----RRPLILKFEEVMKL-------VKPEVEIPA 95
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVEKI 176
+ G+ V + G F V +V++ K +V V + +F R T + ++V +
Sbjct: 96 LKPGQVVEIVAGAFKGMKARVIDVNQSKGQVTVSLLEPLF-RAT-ATIPIDEVRPV 149
>gi|297184778|gb|ADI20888.1| hypothetical protein [uncultured gamma proteobacterium
EB080_L93H08]
Length = 48
Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV 35
M +WY++QVYSN EKK +++ R+ GL +
Sbjct: 1 MEHQWYVLQVYSNYEKKVQKTLEERIKIKGLSSSI 35
>gi|298374772|ref|ZP_06984730.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298269140|gb|EFI10795.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 354
Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ C K + + L R L + PS + R+GR V + R
Sbjct: 17 RWYVLS-LPACHKGPAKGLEKELDRRVRLGGPTFDFFAPSFVEMHRREGRLVETHRPLLY 75
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEA-AVQRP 117
YV I++ +++ +D P + FL G G P V+D E+E++ + + + P
Sbjct: 76 NYVFIRSS-VYEIFRLKRDFP-LYNFLPSVDGRGSYPF-VSDREMENLRWVARSYSDELP 132
Query: 118 V---SSVFFEVGERVCVSDGPFASFNG-IVKNVDEEKSRVHVEVV 158
V + + G+R+ ++DG F +V + V V V
Sbjct: 133 VYVPEAGYLRKGDRIRITDGRFKGVEASVVIQPGVGEREVMVCVD 177
>gi|298378121|ref|ZP_06988051.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298264975|gb|EFI06658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 231
Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 24 GRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTP 83
R R G + E PS G+ VN++R YV + A ++ +K T
Sbjct: 6 SRRERRG--EALFEYFSPSYVEARKVGGKMVNTKRPLLYNYVFVHA--SEDEIFRLKRTL 61
Query: 84 KVIGFL----GTGENPSP-VTDSEIEHIMNQVEAAVQRPVSSVF----FEVGERVCVSDG 134
+ FL G + P ++D E++ + + V G+RV ++ G
Sbjct: 62 PLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAASYSNELPVYVPDSGRLLKGDRVRITSG 121
Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIF 160
PF V V V V I
Sbjct: 122 PFTDMEAEVV-VQPGGGHKDVMVRIL 146
>gi|189009166|ref|YP_001928048.1| transcription antiterminator [Klebsiella pneumoniae]
gi|171850707|gb|ACB55446.1| transcription antiterminator [Klebsiella pneumoniae]
Length = 151
Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVSVRKGRKVNSERR-FFP 62
WY++ C + VE I R+ ++ + P +V + R V E + FP
Sbjct: 4 WYVLY----CNNQDVERITRRVEGLDVE-----VFCPRYIKVTPRKDCRAVRQEEKVLFP 54
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
Y+ + + TI P GF+ G P V S I I
Sbjct: 55 NYLFLCFDVNITHTSTITSIPGAHGFVSFGSTPCTVPKSVITAI 98
>gi|262384780|ref|ZP_06077912.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262293496|gb|EEY81432.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 370
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 17/155 (10%)
Query: 4 RWYIV---QVYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ K +S+ SR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPSTGVARRDKISPAKSLDAEFSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV ++A + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRA--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|320101303|ref|YP_004176895.1| 50S ribosomal protein L24A [Desulfurococcus mucosus DSM 2162]
gi|319753655|gb|ADV65413.1| LSU ribosomal protein L24A [Desulfurococcus mucosus DSM 2162]
Length = 163
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 39 TIPSERVVSVR-KGRKVNSERRFFP----GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
I S RV + KG + + P GYV ++ ++Y + D V
Sbjct: 29 FIISMRVEEKKAKGEETSVRSIIIPPDIKGYVFLEVEKLSELYRVVSDIRYV-----KAG 83
Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
P + E+E ++ + +VG+ V ++ GPF + VD K+ +
Sbjct: 84 RPMKIAYEELEKLLKPKPVIEE-------LDVGDIVEITRGPFKGMRAKITGVDRNKNML 136
Query: 154 HVEV 157
V +
Sbjct: 137 TVNI 140
>gi|330995495|ref|ZP_08319400.1| hypothetical protein HMPREF9442_00460 [Paraprevotella xylaniphila
YIT 11841]
gi|329575563|gb|EGG57101.1| hypothetical protein HMPREF9442_00460 [Paraprevotella xylaniphila
YIT 11841]
Length = 355
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 11/150 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWYI+ + ++ RS D + E P V + G V +ER
Sbjct: 17 RWYILVLPVRHRGDPARALRMEADRSVKRDEAMLEYFAPKYIEVKRKGGEFVPTERPLLY 76
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
YV I++ ++Y + FL G + ++D+E+ ++ EA
Sbjct: 77 NYVFIRST-EAEIYRRQRSALHAYSFLPRVHSGGESHYPYLSDAEMRNLRWVAEAYRGEL 135
Query: 118 VSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV +++G F +V
Sbjct: 136 PVYVPESGRLVKGDRVRITEGEFKGVEAVV 165
>gi|297620007|ref|YP_003708112.1| NusG antitermination factor [Methanococcus voltae A3]
gi|297378984|gb|ADI37139.1| NusG antitermination factor [Methanococcus voltae A3]
Length = 147
Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + E+ E++ R R L+ V I GY+
Sbjct: 3 FAVRTTTGQEQNVAEALASRAERENLE--VFSIL-----------------ATEDLKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + ++ KV G + + E+EH++ +
Sbjct: 44 LVEATNKGAIEELVRQNFKVKGIVPGES-----SVKELEHLLTPTKIIESIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + GPF V VD+ K + +E++ P+ + QV+ I
Sbjct: 92 GDVVELVGGPFKGEKARVTRVDKNKEEITLELMEAAVAIPITVGIEQVKII 142
>gi|317476604|ref|ZP_07935849.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
gi|316907200|gb|EFV28909.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
Length = 167
Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 15/146 (10%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M R WY V V N E + + EI +P + V G+++ +
Sbjct: 1 MVHRHWYAVYVRHNTEFRVESWLR---------EQGIEIYLPVQDVYREHAGKRIKVTKP 51
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV--TDSEIEHIMNQVEAAVQRP 117
G + + ++ ++ P V F +P+ D ++ V+ +
Sbjct: 52 VISGMLFV--CLSRPELTIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSI 109
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGI 142
+ + G V V+ G G
Sbjct: 110 LMVNEPIAPGTMVTVAKGSMQGIRGE 135
>gi|147918706|ref|YP_687571.1| transcription antitermination protein NusG [uncultured methanogenic
archaeon RC-I]
gi|110622967|emb|CAJ38245.1| 50S ribosomal protein L26E [uncultured methanogenic archaeon RC-I]
Length = 164
Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ +N E+ I + LD + + +P E GYV
Sbjct: 16 FAVKTTANQERSVANLIAMVTRKENLD--IRSVLVPEE-----------------LKGYV 56
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L+++ M + V IK+ P + + + E++H + +
Sbjct: 57 LVESPMAEIVEDCIKNIPHAKAVVRGASSIT-----EVQHFLAP-------KPTVTGISE 104
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
G+ V ++ GPF VK +DE K + VE+
Sbjct: 105 GDIVELTAGPFKGEKARVKRIDEAKEEITVELS 137
>gi|254476170|ref|ZP_05089556.1| hypothetical protein RR11_2008 [Ruegeria sp. R11]
gi|214030413|gb|EEB71248.1| hypothetical protein RR11_2008 [Ruegeria sp. R11]
Length = 216
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Query: 26 LSRSGLDHLVTEITIPSERVVSVR---KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
+ L E+ +P +R + K R G++ + +H +
Sbjct: 60 VPELVLQKAGFEVFLPVKREWQRISRFRPEKELRSRPAMEGWLFVGWPAGQARFHELMAL 119
Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS----VFFEVGERVCVSDGPFAS 138
V G +G G P ++D+++ +M + R SS F G+ V V GP
Sbjct: 120 DVVAGVMGAGGRPVRISDAKVRFLMRKFGGGRLRRRSSDVDQPRFAAGDLVRVEAGPLEG 179
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ +V +R + + G+ VEL
Sbjct: 180 QQFALLDVTGGSARAVM--TLLGKDVEVELE 208
>gi|15921653|ref|NP_377322.1| transcription antitermination protein NusG [Sulfolobus tokodaii
str. 7]
gi|15622440|dbj|BAB66431.1| 152aa long hypothetical transcription termination-antitermination
factor [Sulfolobus tokodaii str. 7]
Length = 152
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 30/171 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+V E I R+ + + V I +P GYV
Sbjct: 10 YAVRVTGGQEINVALMIEERIKTNNIKE-VYSIIVP-----------------PNVKGYV 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V + V GF V +I +++ + ++V
Sbjct: 52 ILEATGPHVVKLVSQGIRHVRGFAQGL-----VQKDDIIKFISKT-------TIAPAYKV 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V+ GPF V +D K+ V + ++ V + +QV+ +
Sbjct: 100 GDMVEVTSGPFRGMQAQVVRIDSAKNEVVLNILESSFPLQVTVPIDQVKPV 150
>gi|254474575|ref|ZP_05087961.1| hypothetical protein RR11_410 [Ruegeria sp. R11]
gi|214028818|gb|EEB69653.1| hypothetical protein RR11_410 [Ruegeria sp. R11]
Length = 216
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 26 LSRSGLDHLVTEITIPSERV---VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
+ L E+ +P +R +S + K R G++ + +H +
Sbjct: 60 VPELVLQKAGFEVFLPVKREWQRISRFRPEKELRSRPAMEGWLFVGWPAGQARFHELMAL 119
Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS----VFFEVGERVCVSDGPFAS 138
V G +G G P ++D+++ +M + +R SS F G+ V V GP
Sbjct: 120 DVVAGVMGAGGQPVRISDAKVRFLMRKFGGGRKRRRSSDVDQPRFAAGDLVRVEAGPLEG 179
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
+ +V +R + + G+ VEL
Sbjct: 180 QQFALLDVTGGSARAVM--TLLGKDVEVELE 208
>gi|307108796|gb|EFN57035.1| hypothetical protein CHLNCDRAFT_51331 [Chlorella variabilis]
Length = 1295
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
F+ G++V V+ G F F G V V + R+ E+ IFG+ T VEL+ + V
Sbjct: 759 FQPGQQVAVTQGNFRDFEGTV--VAAQGGRLTAELDIFGKRTRVELSPSDV 807
Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRS--GLD---------HLVTEITIPSE--RVVSVRKG 51
W+ ++V + EK+ E++ + L+ E +P + RV S + G
Sbjct: 129 WWALRVKAGREKQVAEALERLVVELLPPLEAAEEGGAPRQRTIETWVPKKSLRVWSPKTG 188
Query: 52 R---KVNSERRFFP---------GYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
+ KV +P G+VL + V+ ++Y +K P I ++
Sbjct: 189 KMGSKVLRYPATYPAVLASGDNGGWVLARTVLDSELYSRVKANPSFIAWVH 239
>gi|253563579|ref|ZP_04841036.1| UpcY [Bacteroides sp. 3_2_5]
gi|251947355|gb|EES87637.1| UpcY [Bacteroides sp. 3_2_5]
Length = 144
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGEN 94
+ +P + V R+G+++ ER P V + + + ++ T V FL +
Sbjct: 5 DTFLPVQNRVIEREGKRIERERLLLPRMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGA 62
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
P+ + D+++ ++ + + + + G RV V+ G G + + K +
Sbjct: 63 PTCIPDAQMADFRYMLDYSQDQVILTGESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHI 121
Query: 154 HVEVVIFGRVTPVELAYNQVEK 175
V + +FG V + + V K
Sbjct: 122 LVRIDMFG-SAMVTIPASYVRK 142
>gi|45358997|ref|NP_988554.1| transcription antitermination protein NusG [Methanococcus
maripaludis S2]
gi|45047872|emb|CAF30990.1| LSU ribosomal protein L24A [Methanococcus maripaludis S2]
Length = 146
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + EK ES+ R + L+ V I +E GY+
Sbjct: 3 FAVRTTTGQEKNVAESLASRAEKENLE--VFSILA-TED----------------LKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
LI+A + ++ + KV G + P + +E++H++ +
Sbjct: 44 LIEAANKGALDELVRKSFKVKGIV-----PGETSVNELDHLLTPTKIIEHIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + GPF V VD+ K + +E++ P+ + QV+ I
Sbjct: 92 GDVVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGIEQVKII 142
>gi|255011104|ref|ZP_05283230.1| putative transcriptional regulator UpxY-like protein [Bacteroides
fragilis 3_1_12]
Length = 208
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 25/167 (14%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY V+ YS S+ L +++ + P V+ R+V
Sbjct: 38 WYAVRVTYSR-----ELSLKTYLDSESIENFI-----PMRYEYIVKNERRVRKLVPAVHN 87
Query: 64 YVLIKAVMTDKVYHTIKDTPKV---IGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V +++ + IK+ V I ++ P V DS++ M + Q+ V
Sbjct: 88 LVFVRS--CRERIDRIKEEMGVSLPIRYIMDRESRQPIVVPDSQMRSFMAVAGSYEQQLV 145
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S+V F G+RV V+ G FA G V ++ V V I G
Sbjct: 146 YLEPSAVAFRKGQRVRVTGGLFAGVEGEFIRVKNDR---RVMVSIQG 189
>gi|330834457|ref|YP_004409185.1| transcription antitermination protein NusG [Metallosphaera cuprina
Ar-4]
gi|329566596|gb|AEB94701.1| transcription antitermination protein NusG [Metallosphaera cuprina
Ar-4]
Length = 153
Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 34/173 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++V E + R+ +G++ V I +P GY+
Sbjct: 10 YAIKVTGGQEMSVAIMLEERIKTNGINE-VFSIIVP-----------------PALKGYL 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++++ V I V G P V ++I +++++ +
Sbjct: 52 IVESSGPHVVKLIISGIRHVRGI-----APGLVPKTDIMNMVSKKPTGPA-------IKT 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVEKI 176
G+ V V GPF V + E+ V + + F V + +QV +
Sbjct: 100 GDMVEVVSGPFRGMQAQVMGYNAERGEVVLNILESAF--PLQVTIPVDQVRTV 150
>gi|150402603|ref|YP_001329897.1| transcription antitermination protein NusG [Methanococcus
maripaludis C7]
gi|150033633|gb|ABR65746.1| NusG antitermination factor [Methanococcus maripaludis C7]
Length = 146
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 32/172 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + EK ES+ + + L+ V I +E GY+
Sbjct: 3 FAVRTTTGQEKNVAESLASKAEKENLE--VFSILA-TED----------------LKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
LI+A + ++ + KV G + P + SE++H++ +
Sbjct: 44 LIEAANKGALDDLVRKSFKVKGIV-----PGETSVSELDHLLTPTKIIEHIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+ V + GPF V VD+ K V +E++ P+ + QV KIV
Sbjct: 92 GDIVELVGGPFKGERARVTRVDKHKEEVTLELIDAAVPIPITVGVEQV-KIV 142
>gi|301308235|ref|ZP_07214189.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300833705|gb|EFK64321.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 365
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 4 RWYIVQ--VYSN-----CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ K +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAVGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDT-------PKVIGFLGTGENPSPVTDSEIEHIMNQ 109
+ YV I A ++ +K P+V +G ++D E+E +
Sbjct: 84 RKPLLYNYVFIHA--SENEIFRLKRIMPLYNLLPRVS--VGEHSYFPYLSDHEMETLRWM 139
Query: 110 VEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
E+ V G+RV ++ G F V V V V I
Sbjct: 140 AESYSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193
>gi|218528321|ref|YP_002419137.1| hypothetical protein Mchl_0271 [Methylobacterium chloromethanicum
CM4]
gi|218520624|gb|ACK81209.1| hypothetical protein Mchl_0271 [Methylobacterium chloromethanicum
CM4]
Length = 237
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 19/192 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI-TIPSE-----RVVSVRKGRKVNSE 57
RWY+ + E A SI + R + I +P E V S + + +
Sbjct: 45 RWYVCTTAPSRELSAAASIRRAMVRGVREDETPFIPYVPCEYLWRRSVRSNLRVPRREQQ 104
Query: 58 RRFFPGYVLI-------KAVMTDKVYHTI--KDTPKVIGFLGTGEN-PSPVTDSEIEHIM 107
R Y+ + + I ++ + G LG+ P + S + +
Sbjct: 105 RPVMRSYLFVGVLGGLCNVTLAALRERDIEGRNVHGLTGILGSTNRGPLAMNPSGLRWLR 164
Query: 108 NQVEA---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
E +GE V G F+ F G + + + + + G
Sbjct: 165 QLGEDELAGRTNLTPLAGMPLGEEVRAGSGLFSGFIGKFVGTSDGGAVGVISLEVMGAPF 224
Query: 165 PVELAYNQVEKI 176
L ++++
Sbjct: 225 DYRLPIEDIQRV 236
>gi|124028448|ref|YP_001013768.1| transcription antitermination protein NusG [Hyperthermus butylicus
DSM 5456]
gi|123979142|gb|ABM81423.1| transcription antiterminator [Hyperthermus butylicus DSM 5456]
Length = 172
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 31/157 (19%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
+ PR Y V+ + E + R + + I +P
Sbjct: 21 LQPRLYAVRTVAGREIDVALIMEQRARDQNMP--IYAIIVP-----------------PQ 61
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYV+++ + I+ G + P + ++E ++
Sbjct: 62 IKGYVIVETPAAFYATNAIQGIRYAKGVV-----PGVLRYEDVERLLKP-------KAVI 109
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+ V + GPF G V V K+ V + V
Sbjct: 110 ETLKPGDIVEIISGPFRGMKGQVVRVSPSKNEVVLNV 146
>gi|218130112|ref|ZP_03458916.1| hypothetical protein BACEGG_01699 [Bacteroides eggerthii DSM 20697]
gi|217987616|gb|EEC53944.1| hypothetical protein BACEGG_01699 [Bacteroides eggerthii DSM 20697]
Length = 171
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 14/143 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY V V N E + + EI +P + V G+++ +
Sbjct: 8 RHWYAVYVRHNTEFRVESWLR---------EQGIEIYLPVQDVYREHAGKRIKVTKPVIS 58
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV--TDSEIEHIMNQVEAAVQRP-VS 119
G + + ++ ++ P V F +P+ D ++ V+ + +
Sbjct: 59 GMLFV--CLSRPELTIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILMV 116
Query: 120 SVFFEVGERVCVSDGPFASFNGI 142
+ G V V+ G G
Sbjct: 117 NEPIAPGTMVTVAKGSMQGIRGE 139
>gi|255012551|ref|ZP_05284677.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
gi|256839010|ref|ZP_05544520.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298374562|ref|ZP_06984520.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|256739929|gb|EEU53253.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298268930|gb|EFI10585.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 365
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 4 RWYIVQ--VYSN-----CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ K +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAVGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDT-------PKVIGFLGTGENPSPVTDSEIEHIMNQ 109
+ YV I A ++ +K P+V +G ++D E+E +
Sbjct: 84 RKPLLYNYVFIHA--SENEIFRLKRIMPLYNLLPRVS--VGEHSYFPYLSDHEMETLRWM 139
Query: 110 VEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
E+ V G+RV ++ G F V V V V I
Sbjct: 140 AESYSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193
>gi|330997594|ref|ZP_08321440.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
gi|329570305|gb|EGG52040.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
Length = 247
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 33/168 (19%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+++ E++A + + R + +P R + + KG K E P
Sbjct: 55 RWYVLRATYGREREAEDLLKKRGVL---------VYVPKRRTLKMVKGEKKKVEESLLPN 105
Query: 64 YVLIKAV-----------MTDKVYHTIKDTPKVIGFL--------GTGENPSPVTDSEIE 104
V + + + P + F+ + + E+
Sbjct: 106 LVFVFTDECTARRLVSFPLKSESRRK-DKMPVSLHFMYDHTSLNENGLNDVVVIPHKEMV 164
Query: 105 HIMNQVEAAVQ--RPVSSVFF--EVGERVCVSDGPFASFNGIVKNVDE 148
+ + + R VS F + ++V +++G F G V +D
Sbjct: 165 NFIRFTIGGSESIRAVSPADFRIKKDQQVVITEGDFKGVVGRVARIDR 212
>gi|223935505|ref|ZP_03627422.1| NusG antitermination factor [bacterium Ellin514]
gi|223895915|gb|EEF62359.1| NusG antitermination factor [bacterium Ellin514]
Length = 120
Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+P WY + E A ++ + E+ P RV + + F
Sbjct: 5 SPAWYCARTKPKHEHIAAANLLRHAN--------VEVFNPRLRVEKATRRGVIRVSEPLF 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
P Y+ ++ V ++ + I+ + + ++DS + + + + V
Sbjct: 57 PCYIFVRCV-IEEKLNDIRYANGISTIVHFANRIPHISDSVVVELQEHFKEMREAIV 112
>gi|237734243|ref|ZP_04564724.1| nusG antitermination factor [Mollicutes bacterium D7]
gi|229382803|gb|EEO32894.1| nusG antitermination factor [Coprobacillus sp. D7]
Length = 169
Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 14/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ + K + + + + +P + + G+KV +E FP Y
Sbjct: 4 WYLIFA---NDNKINDLLLYFNNHPEMTA-----FVPKIEKLMKKDGKKVFAEVPMFPNY 55
Query: 65 VLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ I++ + ++ I KD + + + E + + ++ + +
Sbjct: 56 IFIESEFNSQEFYQIIESLEKDMDSTMRIMQSDEQKVLSLANNEKELLESLFNDDHLIIR 115
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
S+ V ++ V DGP ++K +D K + +FG+ V L
Sbjct: 116 SIGVIVDSKLIVQDGPLVGKEEMIKKIDRHKRVAFIG-DVFGKTMKVPLE 164
>gi|154491588|ref|ZP_02031214.1| hypothetical protein PARMER_01199 [Parabacteroides merdae ATCC
43184]
gi|160890142|ref|ZP_02071145.1| hypothetical protein BACUNI_02582 [Bacteroides uniformis ATCC 8492]
gi|167764617|ref|ZP_02436738.1| hypothetical protein BACSTE_03007 [Bacteroides stercoris ATCC
43183]
gi|294775939|ref|ZP_06741435.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|154088389|gb|EDN87434.1| hypothetical protein PARMER_01199 [Parabacteroides merdae ATCC
43184]
gi|156860530|gb|EDO53961.1| hypothetical protein BACUNI_02582 [Bacteroides uniformis ATCC 8492]
gi|167697286|gb|EDS13865.1| hypothetical protein BACSTE_03007 [Bacteroides stercoris ATCC
43183]
gi|294450077|gb|EFG18581.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 182
Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 17/160 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++V+ K E I L + ++ + P E + R G K R
Sbjct: 11 WFALKVFY---NKVFE-IEDILKKDKIETYI-----PCEETLMERNGIKKKLRRPVINSL 61
Query: 65 VLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--- 118
+ ++ + + + T KV G P + D E+ M + Q
Sbjct: 62 MFFRSTVCRALEVQRQFTNKVILYTRQKGLKRLPLAIPDREMNIFMLVTSSGEQGMEYFG 121
Query: 119 -SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ F+ GERV V DG F G++ + + R+ V V
Sbjct: 122 EDNSKFQQGERVRVIDGKFKGAEGVICRI-RKNRRLVVTV 160
>gi|139437029|ref|ZP_01771189.1| Hypothetical protein COLAER_00163 [Collinsella aerofaciens ATCC
25986]
gi|133776676|gb|EBA40496.1| Hypothetical protein COLAER_00163 [Collinsella aerofaciens ATCC
25986]
Length = 196
Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 6/155 (3%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+V + E++ E + + + + + + R G + +
Sbjct: 28 RWYLVHTPNGKERETCEKVRCIIPHNLMQDAF----VMQKEFWFKRDGAWSLQTKPMYKE 83
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
Y + + + G+ E P+ D + + ++ S
Sbjct: 84 YFFVATHDAAALDRALAQLSFGCRIAGSRERAYMPMPDDAQDWYRSVLDEDGVVRNSVAR 143
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
E G + + GP V +D K V+V
Sbjct: 144 IEDG-VLHIEQGPLVGQEARVHKIDRRKRWCLVDV 177
>gi|163782751|ref|ZP_02177747.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
gi|159881872|gb|EDP75380.1| transcription antitermination protein NusG [Hydrogenivirga sp.
128-5-R1-1]
Length = 198
Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 52/184 (28%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNS------- 56
WY+++V S E+ E +G E+ PS + ++V G+K S
Sbjct: 2 WYVLKVRSGKEEALKELLGRD----------FEVLYPSRKKLNVYVNGKKRYSFSLSKDK 51
Query: 57 -------------------------------ERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
GY+ +K + + ++ V
Sbjct: 52 DISVRGVNIRIRDGEVFTDNNHPDVRVVISDGESPLRGYLFVKGRY-EDILSKTENLLDV 110
Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
+GFL G +TD E+ + +VE + + E G RV V G + G+++
Sbjct: 111 VGFLIMGGKVRTLTDEEVSDLQKRVEKGERLKT--LLPERGMRVKVVSGEWTGAEGVIEE 168
Query: 146 VDEE 149
V E+
Sbjct: 169 VYED 172
>gi|134045190|ref|YP_001096676.1| transcription antitermination protein NusG [Methanococcus
maripaludis C5]
gi|132662815|gb|ABO34461.1| LSU ribosomal protein L24A [Methanococcus maripaludis C5]
Length = 146
Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 32/172 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + EK ES+ + + L+ V I +E GY+
Sbjct: 3 FAVRTTTGQEKNVAESLASKAEKENLE--VFSILA-TED----------------LKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
LI+A + ++ + KV G + P + SE++H++ +
Sbjct: 44 LIEAANKGALDDLVRKSFKVKGIV-----PGETSVSELDHLLTPTKIIEHIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+ V + GPF V VD+ K + +E++ P+ + QV KIV
Sbjct: 92 GDIVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGVEQV-KIV 142
>gi|110667210|ref|YP_657021.1| transcription antitermination protein NusG [Haloquadratum walsbyi
DSM 16790]
gi|109624957|emb|CAJ51370.1| transcription antitermination protein homolog [Haloquadratum
walsbyi DSM 16790]
Length = 150
Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV++++ + +++ P G + +G T +E+EH ++
Sbjct: 39 SYVMVESDSNAAISRVLEEIPHARGLVKSGGQAGKSTIAEVEHFLSPTPDVE-------G 91
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 92 IAEGDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143
>gi|313148912|ref|ZP_07811105.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137679|gb|EFR55039.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 179
Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 25/167 (14%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY V+ YS S+ L +++ + P V+ R+V
Sbjct: 9 WYAVRVTYSR-----ELSLKTYLDSESIENFI-----PMRYEYIVKNERRVRKLVPAVHN 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKV---IGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V +++ + IK+ V I ++ P V DS++ M + Q+ V
Sbjct: 59 LVFVRS--CRERIDRIKEEMGVSLPIRYIMDRESRQPIVVPDSQMRSFMAVAGSYEQQLV 116
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S+V F G+RV V+ G FA G V ++ V V I G
Sbjct: 117 YLEPSAVAFRKGQRVRVTGGLFAGVEGEFIRVKNDR---RVMVSIQG 160
>gi|269986702|gb|EEZ92982.1| NusG antitermination factor [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 158
Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 50 KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
G + GY++++A + + + I + + G + ++ E
Sbjct: 37 NGIYSIVKPYSLKGYIIVEADSRESISNLIYNIKHIRGIMNKE-----LSKDEALK---- 87
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+++ ++ +G+ V V GPF VK V++EK + V
Sbjct: 88 ---TIEKKKQNIDINIGDVVKVLSGPFKGETATVKAVNKEKEELTVM 131
>gi|38257068|ref|NP_940722.1| Orf37 [Pseudomonas syringae pv. syringae]
gi|37723845|gb|AAR02171.1| Orf37 [Pseudomonas syringae pv. syringae]
Length = 175
Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR---KGRKVNSE 57
M+ WY++ N KAV+ I R+ G + + P+ ++ R G + SE
Sbjct: 1 MS-NWYLI----NHNPKAVQGIIFRIRALGAED----VYSPANLKITKRLDCNGVR-TSE 50
Query: 58 RRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
+ FPGY+ +K + +V H + V F+ G + ++D IE I + + V
Sbjct: 51 TQLFPGYLFVK--LNPEVLHTSIVLQVSGVKKFVSFGGVLATISDCLIEAIKSSLLVRVD 108
Query: 116 RPVSSVF 122
+ V+ +
Sbjct: 109 KKVTQIE 115
>gi|313127228|ref|YP_004037498.1| LSU ribosomal protein l24a [Halogeometricum borinquense DSM 11551]
gi|312293593|gb|ADQ68053.1| LSU ribosomal protein L24A [Halogeometricum borinquense DSM 11551]
Length = 151
Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + E+ + I R + + P YV
Sbjct: 7 FAVKTTARQEQTVADMIATREEAE-----IHAVLAP-----------------DSLTSYV 44
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A + +++ P G +G G+ S + +E+EH ++
Sbjct: 45 MVEADNNAVINRVLEEIPHARGLVGDGQATS--SMAEVEHFLSPTPDVE-------GIAE 95
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 96 GDIVELVAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 144
>gi|317491663|ref|ZP_07950098.1| transcription termination factor nusG [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920097|gb|EFV41421.1| transcription termination factor nusG [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 153
Score = 50.5 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK--GRKVNSERRFFP 62
WY+V I + L L P R+ RK G F
Sbjct: 3 WYLVCCKRGK-------IEQAKTTLSL--LGVRTFCPMMRIEKKRKDSGGVRVKIEPMFQ 53
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
Y+ ++ + ++ +P V F+ G+ P + + I+ +M Q
Sbjct: 54 PYLFVEFDPLEVNISSVNSSPGVSYFVRYGDEPRALPKALIDALMIQT 101
>gi|150007996|ref|YP_001302739.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149936420|gb|ABR43117.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 369
Score = 50.5 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ K +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDKISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV I++ + + +K T + FL G + ++DSE+ ++ E+
Sbjct: 87 RPLLFNYVFIRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDSEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSNRLLKGDRVRITSGYFTGMEAEV 179
>gi|150401434|ref|YP_001325200.1| transcription antitermination protein NusG [Methanococcus aeolicus
Nankai-3]
gi|150014137|gb|ABR56588.1| NusG antitermination factor [Methanococcus aeolicus Nankai-3]
Length = 146
Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++ + E E + + + ++ + I +E GY+
Sbjct: 3 YAIRTTTGQELNVAEFLAAKAEKEDIE--IYSILA-TED----------------LKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + I+ T KV G + + E+EH++ +
Sbjct: 44 LVEAPNMGALEDLIRKTFKVKGIVQGET-----SVDELEHLLTPTKIIETIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + GPF V VD+ K + +E++ P+ + QV+ I
Sbjct: 92 GDTVELVAGPFKGERARVIRVDKHKEEITLELMDAAVPIPITVGIEQVKII 142
>gi|329954527|ref|ZP_08295618.1| transcription termination/antitermination factor NusG
[Bacteroides clarus YIT 12056]
gi|328527495|gb|EGF54492.1| transcription termination/antitermination factor NusG
[Bacteroides clarus YIT 12056]
Length = 107
Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 22/89 (24%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RW + E+K + RL+ +G P + V KG+
Sbjct: 7 MS-RWCALHTAPKSERK----LMQRLNAAGYTA-----FCPMQIVFKKWKGQTKEVFAPL 56
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
FPG V ++ +T V F+
Sbjct: 57 FPGCVFVE------------ETTGVASFV 73
>gi|12053565|emb|CAC20137.1| Actx protein [Escherichia coli]
gi|324110940|gb|EGC04930.1| transcription termination proteinusG [Escherichia fergusonii B253]
Length = 163
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60
+WY++Q + ++ L R + P R ++++ R
Sbjct: 1 MKWYVLQFTTTRF-----AAVFKHLERLNFSYY-----CPMATEKYRRPDKQLSYRERLT 50
Query: 61 --FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI 103
FPGY+ I+A + TI P F+ G P V D E+
Sbjct: 51 PLFPGYLFIQADFDEVHTTTITGLPHTQRFIAFGGEPLAVPDDEV 95
>gi|262384907|ref|ZP_06078036.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262293459|gb|EEY81398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 370
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRERRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV +++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|223992663|ref|XP_002286015.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977330|gb|EED95656.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 738
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 37/189 (19%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGG-RLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
P+WY++ + E ++ + RL V +I +P ER + +K + +
Sbjct: 77 EPQWYLINCVAGIE---LDLLAQARLVTKDFPPTDVEKIVVPVERHLRSHGDKKKVVDVK 133
Query: 60 -FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---------PSPVTDSEIEHIMN- 108
+PGYV K +T+ VY T+++ ++GT P P+ D E++
Sbjct: 134 VRYPGYVFCKIRLTEDVYETLQELELARSWMGTVNRKGHKKLPPAPLPLPDEEVKKFKGL 193
Query: 109 -----------------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
+ ++ +EVG+ V V G F +G V+ + + +
Sbjct: 194 EEKQELFEDMFGDDFSGRTDSGEDLLAQYAGYEVGQMVKVLSGNFEGEDGTVRRLKDGQ- 252
Query: 152 RVHVEVVIF 160
+ V +F
Sbjct: 253 ---ICVRMF 258
>gi|20094259|ref|NP_614106.1| transcription antitermination protein NusG [Methanopyrus kandleri
AV19]
gi|19887296|gb|AAM02036.1| Transcription antiterminator NusG [Methanopyrus kandleri AV19]
Length = 163
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 34/157 (21%)
Query: 6 YIVQVYSNCEKKAVESI----GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
Y V+V + E+ + + ++ G++ + + P E
Sbjct: 10 YAVRVQAGREEATADMLVMRARRKVKEEGIETGLKAVIAPEE-----------------L 52
Query: 62 PGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYV+I+ +TD++ I D P G + P+ EIEH AV+
Sbjct: 53 RGYVIIEVEELTDELRDLIHDLPDTRGIV-----EKPMDFEEIEHYFAPKPEAVE----- 102
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G+ V + GPF V +VDE + + VE+
Sbjct: 103 --ISEGDVVEILSGPFKGEKARVVSVDESRREITVEL 137
>gi|237732781|ref|ZP_04563262.1| nusG antitermination factor [Mollicutes bacterium D7]
gi|229384151|gb|EEO34242.1| nusG antitermination factor [Coprobacillus sp. D7]
Length = 163
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE---RRFF 61
WY+ + + KK V ++ ++ ++ + + SER GR +E + +
Sbjct: 3 WYVARCKTGRTKKLVSTLNKQV---NMNAFIPK----SERCF----GRGETAEFIVKEIY 51
Query: 62 PGYVLIKAVMTDKVYHT-----IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
P YV IK+ + + + K ++ L + P+T E + ++ ++
Sbjct: 52 PDYVFIKSDLDQEAFDEQFKEYFKTINGLVDLLEYKDTY-PLTSEE-QSLLEKLLDNTDT 109
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V R +DGP ++K VD+ + ++ IF V + Y
Sbjct: 110 IKHTKGVIVDRRFVPTDGPLVGLEDMIKKVDKYRRFATLDTEIFTGKLLVAIDY 163
>gi|253577028|ref|ZP_04854351.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843638|gb|EES71663.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 277
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 6 YIVQVYSNCEKKAVESIG-GRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFFP 62
+ +QV + E + + + + + + + K +R P
Sbjct: 5 FAIQVMTGKENNVKKLMEWAFARNESAQNWIKAVHTFTTTTRRLLGQGKLGKEIKRAIMP 64
Query: 63 GYVLIKAV-----------MTDKVYHTIKDTPKVIG-FLGTGENPSPVTDSEIEHIMNQV 110
GY+ I+ + V+H IK P VI F G+G+ + E + ++
Sbjct: 65 GYIFIEMNYSVDENNCSAHLPADVWHLIKSIPGVIKQFTGSGQ---VIGAEEFQKMLGLE 121
Query: 111 EAAVQRPV 118
Q V
Sbjct: 122 PEEQQVEV 129
>gi|298376654|ref|ZP_06986609.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|301309917|ref|ZP_07215856.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|298266532|gb|EFI08190.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|300831491|gb|EFK62122.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 370
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV +++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|281422967|ref|ZP_06253966.1| putative transcription termination factor NusG [Prevotella copri
DSM 18205]
gi|281402970|gb|EFB33650.1| putative transcription termination factor NusG [Prevotella copri
DSM 18205]
Length = 223
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV--SVRKGRKVNSERRFFP 62
WY+ V NCE + +SI +H+ + IP +VV R ++ E+ F
Sbjct: 50 WYVAVVRVNCETRIADSIR---INLNHNHVWFDYWIPKVKVVYIDKRSNKRKVKEKLFLS 106
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
++ + + I+ V L + D + + VE + ++
Sbjct: 107 TFIFCNV--SPRQLDKIRFRSDVYKMLTMPGQRKIYQIPDQVVANYRYFVENDEEPVTAA 164
Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
V + G +V V G V++ + +K
Sbjct: 165 PVPLKKGIKVRVVAGSMKGVEAYVQSYNGKK 195
>gi|159905622|ref|YP_001549284.1| transcription antitermination protein NusG [Methanococcus
maripaludis C6]
gi|159887115|gb|ABX02052.1| NusG antitermination factor [Methanococcus maripaludis C6]
Length = 146
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 32/172 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + EK ES+ + + L+ V I +E GY+
Sbjct: 3 FAVRTTTGQEKNVAESLASKAEKENLE--VFSILA-TED----------------LKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
LI+A + ++ + KV G + P + SE++H++ +
Sbjct: 44 LIEAANKGALDELVRKSFKVKGIV-----PGETSVSELDHLLTPTKIIEHIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+ V + GPF V VD+ K + +E++ P+ + QV KIV
Sbjct: 92 GDIVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGVEQV-KIV 142
>gi|150008057|ref|YP_001302800.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149936481|gb|ABR43178.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 370
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV +++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|301309846|ref|ZP_07215785.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300831420|gb|EFK62051.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 367
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRERRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV I++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFIRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|150003289|ref|YP_001298033.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
gi|150004094|ref|YP_001298838.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
gi|149931713|gb|ABR38411.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
gi|149932518|gb|ABR39216.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
Length = 155
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGE 93
E IP E + R G K R + ++ + + + T KV G
Sbjct: 7 ETYIPCEETLMERNGIKKKLRRPVINSLMFFRSTVCRALEVQRQFTNKVILYTRQKGLKR 66
Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
P + D E+ M + Q + F+ GERV V DG F G++ + +
Sbjct: 67 LPLAIPDREMNIFMLVTSSGEQGMEYFGEDNSKFQQGERVRVIDGKFKGAEGVICRI-RK 125
Query: 150 KSRVHVEV 157
R+ V V
Sbjct: 126 NRRLVVTV 133
>gi|290558848|gb|EFD92240.1| KOW domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 158
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 32/151 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+IV+V E +A+E + +L R KG + GY+
Sbjct: 13 FIVRVTIGREMQALERLESQLLR--------------------VKGIYSIIKPYSLKGYI 52
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+I+A + V I + + G + ++ E +++ + V
Sbjct: 53 IIEADSKNSVSDLIYNIKHLRGIINKE-----LSKEEALK-------TIEKKQQKIDVNV 100
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
G+ V V GPF VK V++EK + V
Sbjct: 101 GDVVKVLSGPFKGETATVKGVNKEKQELTVM 131
>gi|37518411|emb|CAD58560.1| hypothetical protein [Yersinia enterocolitica]
Length = 178
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK--GRKVNSERRFFP 62
WY++ + K I R++ G+ + P VS R E+ FP
Sbjct: 31 WYVLYCKAQDVGK----ITKRVNGLGVS-----VFCPRYVRVSHRTDCNSVRIEEKVLFP 81
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
Y+ + + TI P +GF+ G + V I I
Sbjct: 82 NYLFLSFDINKIHTSTISSIPGAVGFIRFGSDACTVPQKVISAI 125
>gi|298481737|ref|ZP_06999927.1| transcriptional regulator [Bacteroides sp. D22]
gi|298271959|gb|EFI13530.1| transcriptional regulator [Bacteroides sp. D22]
Length = 146
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 40 IPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT 99
+P ++ + R+ + P V + +++ T + P+ +
Sbjct: 1 VPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIP 60
Query: 100 DSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
D ++ ++ + + ++ GE+V V GP + G + V KS++ V +
Sbjct: 61 DEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLN 119
Query: 159 IFG 161
+ G
Sbjct: 120 MLG 122
>gi|255081736|ref|XP_002508090.1| predicted protein [Micromonas sp. RCC299]
gi|226523366|gb|ACO69348.1| predicted protein [Micromonas sp. RCC299]
Length = 591
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 63/197 (31%), Gaps = 81/197 (41%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG------------ENPSPVT--------- 99
FPGYVL+ ++ +++++ V GF +G E P PV
Sbjct: 395 FPGYVLVHMKLSQTTLNSLEEIYGVKGFASSGVTKYGSTRRQTGERPRPVPAMQLETMMK 454
Query: 100 --------DSEIEHI---MNQVEAAVQRPV------------------------SSVFFE 124
D+E I + + A ++ S+
Sbjct: 455 MCDVRVVSDAEHAKITEALKRRREAEEKAAAMGTIPAADDGDVQTHKSADPTADSNAEPI 514
Query: 125 VGE-----------------------RVCVSDGPFASFNGIVKNVDEEK--SRVHVEVVI 159
VGE + V GPF F G V + D+ + V ++VI
Sbjct: 515 VGEEAMALRDAAIRPGAATATGAGAASIEVVAGPFKGFKGYVTSADKPRGDGAVDAKLVI 574
Query: 160 FGRVTPVELAYNQVEKI 176
FGR T V L + E +
Sbjct: 575 FGRETDVTLEAGEFETL 591
>gi|218130699|ref|ZP_03459503.1| hypothetical protein BACEGG_02290 [Bacteroides eggerthii DSM 20697]
gi|217987043|gb|EEC53374.1| hypothetical protein BACEGG_02290 [Bacteroides eggerthii DSM 20697]
Length = 107
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW + E+K + RL+ +G P + V G+ FPG
Sbjct: 9 RWCALYTAPRSERK----LMQRLNEAGYAA-----FCPMQIVFRKWNGKTKEVFTPLFPG 59
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
++ ++ +T V F+ +N + + D+E + + E A
Sbjct: 60 FLFVE------------ETADVASFV-ASQNVALLVDAEGKRLSVCAEKAE 97
>gi|256840763|ref|ZP_05546271.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738035|gb|EEU51361.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 370
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV +++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|329963040|ref|ZP_08300820.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328529081|gb|EGF56011.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 178
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + G +P + +S++KG+KV +
Sbjct: 10 WYAMRATYRREPDAMRLLEK--EHLG-------CFVPMQYKISIKKGKKVRALVPVIHNL 60
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
+ + A +D +V + + +GE + D+E++ +
Sbjct: 61 LFVHARPSDLKRVKSQVAYLQYITD-TRSGEKII-IPDNEMQRFIAVAGTYNDHLLYFQP 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V V+ G F G+ V + R V V I G
Sbjct: 119 EELNLSKGTKVRVTGGDFEGQEGVFLKVKGARDR-RVIVAIQG 160
>gi|224539462|ref|ZP_03680001.1| hypothetical protein BACCELL_04367 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518920|gb|EEF88025.1| hypothetical protein BACCELL_04367 [Bacteroides cellulosilyticus
DSM 14838]
Length = 179
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 26/170 (15%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
TP WY ++ E A+ + + G +P + +S++KG+KV
Sbjct: 7 TPIWYAMRATYRREPDAMRLLEK--EKLG-------CFVPMQYKISIKKGKKVRVLVPVI 57
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL------GTGENPSPVTDSEIEHIMNQVEAAVQ 115
+ + A ++ +K + +L +G+ ++DSE++ +
Sbjct: 58 HNLLFVHACPSE-----VKRIKSQVTYLQYITDTRSGQKII-ISDSEMQRFIAVAGTYND 111
Query: 116 R----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F GI V + R V V I G
Sbjct: 112 HLMYFQPDELNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVVAIQG 160
>gi|255016016|ref|ZP_05288142.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
Length = 373
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ--VYSNCEK------KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + + K ++ R R G + E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSKGLDVELSRRERRG--EALFEYFAPSYVEVRKVGGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQV 110
+ R YV I++ ++++ + P + FL G+ + D E+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFRMKQALP-LYNFLPRVSSGSTTYFPHLLDQEMANLRWVA 143
Query: 111 EA-AVQRPV---SSVFFEVGERVCVSDGPFASFNGIV 143
EA + + PV S G+RV ++ G F V
Sbjct: 144 EAYSNELPVYVPESTRLLKGDRVRITSGYFTGMEAEV 180
>gi|160889802|ref|ZP_02070805.1| hypothetical protein BACUNI_02233 [Bacteroides uniformis ATCC 8492]
gi|156860794|gb|EDO54225.1| hypothetical protein BACUNI_02233 [Bacteroides uniformis ATCC 8492]
Length = 206
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E AV + G +P + VS+RKG+KV +
Sbjct: 38 WHAMRATYRRELDAVHLLEK--ENLG-------CFVPMQYKVSIRKGKKVRTLVPVIRNL 88
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
V + A +D +V I + +G+ + D E++ +
Sbjct: 89 VFVHARPSDVQRVKSQITYLQYITD-TRSGQKII-IPDHEMQRFIAVAGTYNDHLLYFQP 146
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G RV ++ G FA GI V + R V + I G
Sbjct: 147 EELNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 188
>gi|317474236|ref|ZP_07933512.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
gi|316909546|gb|EFV31224.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
Length = 115
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW + E+K + RL+ +G P + V G+ FPG
Sbjct: 17 RWCALYTAPRSERK----LMQRLNEAGYAA-----FCPMQIVFRKWNGKTKEVFTPLFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
++ ++ +T V F+ +N + + D+E + + E A
Sbjct: 68 FLFVE------------ETADVASFV-ASQNVALLVDAEGKRLSVCAEKAE 105
>gi|254442726|ref|ZP_05056202.1| hypothetical protein VDG1235_960 [Verrucomicrobiae bacterium
DG1235]
gi|198257034|gb|EDY81342.1| hypothetical protein VDG1235_960 [Verrucomicrobiae bacterium
DG1235]
Length = 83
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V D ++ I E + P F+ GE V V +GPF G V E SRV + +
Sbjct: 3 VEDEVVDLIKENSEDLMLSPAVDDSFQCGENVEVLEGPFQGMMGTVLQNLNEGSRVAILL 62
Query: 158 VIFGRVTPVELAYNQV 173
+ T V ++ + +
Sbjct: 63 TLLTSETKVTISRSHL 78
>gi|150010187|ref|YP_001304930.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149938611|gb|ABR45308.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 365
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 4 RWYIVQ---VYSNCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY + + K +++ R R G + E PS G+ VN+
Sbjct: 26 RWYALTLPTAIGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDT-------PKVIGFLGTGENPSPVTDSEIEHIMNQ 109
+ YV I A ++ +K P+V +G ++D E+E +
Sbjct: 84 RKPLLYNYVFIHA--SENEIFRLKRIMPLYNLLPRVS--VGEHSYFPYLSDHEMETLRWM 139
Query: 110 VEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
E+ V G+RV ++ G F V V V V I
Sbjct: 140 AESYSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193
>gi|301308790|ref|ZP_07214742.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300833314|gb|EFK63932.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 373
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ--VYSNCEK------KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + + K ++ R R G + E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSKGLDVELSRRERRG--EALFEYFAPSYVEVRKVGGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQV 110
+ R YV I++ ++++ + P + FL G+ + D E+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFRMKQALP-LYNFLPRVSSGSTTYFPHLLDQEMANLRWVA 143
Query: 111 EA-AVQRPV---SSVFFEVGERVCVSDGPFASFNGIV 143
EA + + PV S G+RV ++ G F V
Sbjct: 144 EAYSNELPVYVPESTRLLKGDRVRITSGYFTGMEAEV 180
>gi|270294077|ref|ZP_06200279.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275544|gb|EFA21404.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 178
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E AV + G +P + VS+RKG+KV +
Sbjct: 10 WHAMRATYRRELDAVHLLEK--ESLG-------CFVPMQYKVSIRKGKKVRTLVPVIRNL 60
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
V + A +D +V I + +G+ + D E++ +
Sbjct: 61 VFVHARPSDVQRVKSQITYLQYITD-TRSGQKII-IPDHEMQRFIAVAGTYNDHLLYFQP 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G RV ++ G FA GI V + R V + I G
Sbjct: 119 EELNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 160
>gi|169350274|ref|ZP_02867212.1| hypothetical protein CLOSPI_01018 [Clostridium spiroforme DSM 1552]
gi|169293057|gb|EDS75190.1| hypothetical protein CLOSPI_01018 [Clostridium spiroforme DSM 1552]
Length = 165
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 15/171 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI V + K V S+ + + + E +P + + ++ + +P Y
Sbjct: 3 WYIAHVKAGQASKLVGSLNKQ------EDI--EAFVPKKEQWYRARDKRTYVIKELYPDY 54
Query: 65 VLIKAVMTDKVYH-----TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V IK+ + + + +I L + P+T E + + ++
Sbjct: 55 VFIKSKLNKDKFDEKFKVFFRTIEGLIELLDYKDVY-PLTLDE-QSFLERLFDGGYVIKH 112
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
++ + R GP + ++ V ++ IF V +
Sbjct: 113 TLGNIINSRFNAIKGPLIGLEDRIIKLNRHDRFVTLDCKIFNGKFNVAIEM 163
>gi|262384292|ref|ZP_06077427.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262293995|gb|EEY81928.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 373
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ--VYSNCEK------KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + + K ++ R R G V E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSKGLDVELSRRERRG--ETVFEYFAPSYVEVRKVGGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQV 110
+ R YV I++ ++++ + P + FL G+ + D E+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFRMKQALP-LYNFLPRVSSGSTTYFPHLLDQEMANLRWVA 143
Query: 111 EA-AVQRPV---SSVFFEVGERVCVSDGPFASFNGIV 143
EA + + PV S G+RV ++ G F V
Sbjct: 144 EAYSNELPVYVPESTRLLKGDRVRITSGYFTGMEAEV 180
>gi|256842037|ref|ZP_05547542.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256736353|gb|EEU49682.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 373
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ--VYSNCEK------KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + + K ++ R R G + E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSKGLDVELSRRERRG--ETLFEYFAPSYVEVRKVGGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQV 110
+ R YV I++ ++++ + P + FL G+ + D E+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFRMKQALP-LYNFLPRVSSGSTTYFPHLLDQEMANLRWVA 143
Query: 111 EA-AVQRPV---SSVFFEVGERVCVSDGPFASFNGIV 143
EA + + PV S G+RV ++ G F V
Sbjct: 144 EAYSNELPVYVPESTRLLKGDRVRITSGYFTGMEAEV 180
>gi|85716580|ref|ZP_01047550.1| hypothetical protein NB311A_12027 [Nitrobacter sp. Nb-311A]
gi|85696581|gb|EAQ34469.1| hypothetical protein NB311A_12027 [Nitrobacter sp. Nb-311A]
Length = 140
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M + W + ++ E I + +P+ V GR +SER
Sbjct: 1 MAEQFWAACRTFTGREHVVRAKIEELDRGA---------FLPTYVRSWVSGGRLSSSERA 51
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
PGYV ++ D + ++ VIG L G+ +++ E+ +
Sbjct: 52 AVPGYVFFRSSRDD--WPPVQGVDGVIGVLLDGDRAMRISNDEMARL 96
>gi|298377389|ref|ZP_06987342.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298265803|gb|EFI07463.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 373
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ--VYSNCEK------KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + + K ++ R R G + E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSKGLDVELSRRERRG--ETLFEYFAPSYVEVRKVGGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQV 110
+ R YV I++ ++++ + P + FL G+ + D E+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFRMKQALP-LYNFLPRVSSGSTTYFPHLLDQEMANLRWVA 143
Query: 111 EA-AVQRPV---SSVFFEVGERVCVSDGPFASFNGIV 143
EA + + PV S G+RV ++ G F V
Sbjct: 144 EAYSNELPVYVPESTRLLKGDRVRITSGYFTGMEAEV 180
>gi|150006961|ref|YP_001301704.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149935385|gb|ABR42082.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 373
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 4 RWYIVQ--VYSNCEK------KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ + + K ++ R R G + E PS V G+ VN
Sbjct: 28 RWYVLTLPTAAGGRRDRISPSKGLDVELSRRERRG--EALFEYFAPSYVEVRKVGGKLVN 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQV 110
+ R YV I++ ++++ + P + FL G+ + D E+ ++
Sbjct: 86 TRRPLLFNYVFIRSS-VEEIFRMKQALP-LYNFLPRVSSGSTTYFPHLLDQEMANLRWVA 143
Query: 111 EA-AVQRPV---SSVFFEVGERVCVSDGPFASFNGIV 143
EA + + PV S G+RV ++ G F V
Sbjct: 144 EAYSNELPVYVPESARLLKGDRVRITSGYFTGMEAEV 180
>gi|18656144|emb|CAD23070.2| putative termination transcription factor [Haloferax mediterranei]
Length = 150
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV+++A V +++ P G + +G + +E+EH ++
Sbjct: 39 SYVMVEADDDGIVSRVLEEIPHARGLVESGGMVGTSSMAEVEHFLSPTPDVE-------G 91
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 92 IAEGDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143
>gi|317478832|ref|ZP_07937983.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|316905008|gb|EFV26811.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 178
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E AV + G +P + VS+RKG+KV +
Sbjct: 10 WHAMRATYRRELDAVHLLEK--ENLG-------CFVPMQYKVSIRKGKKVRTLVPVIRNL 60
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
V + A +D +V I + +G+ + D E++ +
Sbjct: 61 VFVHARPSDVQRVKSQITYLQYITD-TRSGQKII-IPDHEMQRFIAVAGTYNDHLLYFQP 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G RV ++ G FA GI V + R V + I G
Sbjct: 119 EELNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 160
>gi|119719322|ref|YP_919817.1| NusG antitermination factor [Thermofilum pendens Hrk 5]
gi|119524442|gb|ABL77814.1| NusG antitermination factor [Thermofilum pendens Hrk 5]
Length = 157
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 37/176 (21%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R+Y ++V S E + + R + V I + G
Sbjct: 10 RFYALRVTSGQEYNVAQLLYRRAASGKY--KVYSILV-----------------VPGLKG 50
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
V +++ + V G + V+ E+E ++ P V
Sbjct: 51 MVFVESDALYEAQRLAYGLKHVRGVVRGA-----VSLQEMEGLLK--------PKPLVDQ 97
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVEKI 176
VG+ V + GPF G + +D+ ++ V VE+ +F V PV + + ++ I
Sbjct: 98 LNVGDFVEIIRGPFTGMRGRIVGIDKSRNEVKVELAEAVF--VLPVTINADDIKVI 151
>gi|15668548|ref|NP_247346.1| transcription antitermination protein NusG [Methanocaldococcus
jannaschii DSM 2661]
gi|2499343|sp|Q57818|NUSG_METJA RecName: Full=Putative transcription antitermination protein nusG
gi|1591079|gb|AAB98361.1| LSU ribosomal protein L24A [Methanocaldococcus jannaschii DSM 2661]
Length = 147
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 31/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ EK + R + LD GYV
Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLDVY-------------------SILASESLKGYV 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A V IK P+V G + P + EIE ++ E
Sbjct: 44 LVEAETKGDVEELIKGMPRVRGIV-----PGTIAIEEIEPLLTP-------KKIIENIEK 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
G+ V + GPF V VD+ K V +E+
Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKHKEEVTLELE 124
>gi|284161993|ref|YP_003400616.1| NusG antitermination factor [Archaeoglobus profundus DSM 5631]
gi|284011990|gb|ADB57943.1| NusG antitermination factor [Archaeoglobus profundus DSM 5631]
Length = 148
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 31/154 (20%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+++ V+ N E+ + + + L+ V I P E G
Sbjct: 3 KFFAVKTTVNQERIVANLMELAVKKYNLE--VYSILAPKE-----------------LRG 43
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YVL++A V I P G L + E+EH + A Q
Sbjct: 44 YVLVEAKDIQNVRRAITGIPHARGILSGE-----IPFKEVEHFLTPKRAVEQ-------I 91
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G +V + GPF IV+ VD K+ + VE+
Sbjct: 92 KEGYKVEIIAGPFKGEQAIVRRVDPSKNEITVEL 125
>gi|320321601|gb|EFW77708.1| transcriptional regulator [Pseudomonas syringae pv. glycinea str.
B076]
Length = 175
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR---KGRKVNSE 57
M+ WY++ N KAV+ I R+ G + + P+ ++ R G + SE
Sbjct: 1 MS-NWYLI----NHNPKAVQGIIFRIRALGAED----VYSPANLKITKRLDCNGVR-TSE 50
Query: 58 RRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
+ FPGY+ +K + +V H + V F+ G + V+D IE I + + V
Sbjct: 51 TQLFPGYLFVK--LNPEVLHTSIVLQVSGVKEFVSFGGVLATVSDCLIEAIKSSLLVRVD 108
Query: 116 RPVSSVF 122
+ V+ +
Sbjct: 109 KKVTQIE 115
>gi|49188541|ref|YP_025639.1| transcriptional regulator [Pseudomonas syringae pv. maculicola]
gi|47525124|gb|AAT35138.1| transcriptional regulator [Pseudomonas syringae pv. maculicola]
gi|330962560|gb|EGH62820.1| transcriptional regulator [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 175
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR---KGRKVNSE 57
M+ WY++ N KAV+ I R+ G + + P+ ++ R G + SE
Sbjct: 1 MS-NWYLI----NHNPKAVQGIIFRIRALGAED----VYSPANLKITKRLDCNGVR-TSE 50
Query: 58 RRFFPGYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
+ FPGY+ +K + +V H + V F+ G + V+D IE I + + V
Sbjct: 51 TQLFPGYLFVK--LNPEVLHTSIVLQVSGVKEFVRFGGVLATVSDCLIEAIKSSLLVRVD 108
Query: 116 RPVSSVF 122
+ V+ +
Sbjct: 109 KKVTQIE 115
>gi|237708360|ref|ZP_04538841.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229457581|gb|EEO63302.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 183
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++V+ K E I L + ++ + P E + R G K R
Sbjct: 11 WFALKVFY---NKVFE-IEDILKKDKIETYI-----PCEETLMERNGIKKKLRRPVINSL 61
Query: 65 VLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--- 118
+ ++ + + + T KV G + P + + E++ M + Q
Sbjct: 62 MFFRSTVCRALEVQRQFTNKVILYTRQEGLRKLPLAIPEREMDVFMLVTSSGEQGMEYFG 121
Query: 119 -SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ F GERV V DG F G++ + + SR+ V V
Sbjct: 122 EDNPKFYKGERVRVIDGKFKGAEGVICRI-RKNSRLVVTV 160
>gi|288931718|ref|YP_003435778.1| NusG antitermination factor [Ferroglobus placidus DSM 10642]
gi|288893966|gb|ADC65503.1| NusG antitermination factor [Ferroglobus placidus DSM 10642]
Length = 151
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R+++V+ +N E+ ++ +++ V I P E G
Sbjct: 3 RFFVVKTTANQERLVA-NMMSMVAKKN-KANVYSILAPKE-----------------LKG 43
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+++A T+ + +I+ P V G + V+ +EIEH + +AA Q
Sbjct: 44 YVIVEAESTEDLVKSIRGVPHVKGLVRGE-----VSFNEIEHFLTPRKAAEQ-------I 91
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G V + GPF +VK VDE ++ + VE+
Sbjct: 92 KEGYTVEIISGPFKGELAVVKRVDEARNEITVEL 125
>gi|325300526|ref|YP_004260443.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
gi|324320079|gb|ADY37970.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
Length = 500
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 33/172 (19%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++V E + I G + E+ P+ V VR+G ++ FF GY
Sbjct: 12 WFLVCTKPGHEPELCLLIERE---KGKIRNILEVYCPTHTKVYVRRG-DNEQQQPFFNGY 67
Query: 65 VLIKAV-------MTDK-----VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
V + A + D +++ K TP + +S++ + E
Sbjct: 68 VFVLATQDALVEFLRDNNSDAYIWYNRKCTPD------EKATVCTIPESQMRAFRDYNEN 121
Query: 113 AVQR----PVSSVFF-------EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ + E E V V DGP A G + ++K V
Sbjct: 122 YADKVIVLERPYTDYAVNAKTDEPNEIVRVVDGPLAGCEGYICRFHKKKGLV 173
>gi|222479330|ref|YP_002565567.1| NusG antitermination factor [Halorubrum lacusprofundi ATCC 49239]
gi|222452232|gb|ACM56497.1| NusG antitermination factor [Halorubrum lacusprofundi ATCC 49239]
Length = 150
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV+++A + + P G + E P+ SE+EH ++
Sbjct: 39 SYVMVEATDGSVFARILDEIPHARGVIQGSEGPAESPFSEVEHFLSPTPDVE-------G 91
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 92 IAEGDIVELIAGPFKGEKARVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 143
>gi|218672066|ref|ZP_03521735.1| transcription antitermination protein NusG [Rhizobium etli GR56]
Length = 31
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+DEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 1 MDEERSRLKVEVSIFGRATPVELEYAQVEKV 31
>gi|150006689|ref|YP_001301432.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|298377654|ref|ZP_06987605.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
gi|149935113|gb|ABR41810.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|298265357|gb|EFI07019.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
Length = 179
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++V+ K E I L + +D P E V +R G + +
Sbjct: 11 WFALKVFY---NKVFE-IEESLKKDDIDCYF-----PCEDAVVMRNGVRKIIRKPIISSI 61
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP-- 117
+ + + + T KVI L T + P + D E+ M + +
Sbjct: 62 LFFHSTTLRAMEIQRQFTDKVI--LYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEY 119
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
S F GERV V DG F G + + ++ SR+ V +
Sbjct: 120 LGADSTKFCRGERVRVIDGKFKGAEGYICRI-KKNSRLVVAI 160
>gi|182415449|ref|YP_001820515.1| NusG antitermination factor [Opitutus terrae PB90-1]
gi|177842663|gb|ACB76915.1| NusG antitermination factor [Opitutus terrae PB90-1]
Length = 180
Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 49/187 (26%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W + CEKK + E +P V + + + FPGY
Sbjct: 23 WLVCHTKPRCEKKFAAL---------MAAERFEHYLPLVDSVRKYRQQTKRFTKPLFPGY 73
Query: 65 VL-----------------IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
V +A+ D ++ V + +G + +
Sbjct: 74 VFACVPNEKRARIFQQDLLARAIDVDDERRFLRQLDDVRAIVASGYELTVLP-------- 125
Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
G RV + GP G V + + V + V + + V+
Sbjct: 126 --------------LLTRGRRVKIVGGPLHGLEGFVDDPSNPRG-VVLSVDVLQQGLLVK 170
Query: 168 LAYNQVE 174
L ++
Sbjct: 171 LPAENLQ 177
>gi|256811382|ref|YP_003128751.1| NusG antitermination factor [Methanocaldococcus fervens AG86]
gi|256794582|gb|ACV25251.1| NusG antitermination factor [Methanocaldococcus fervens AG86]
Length = 147
Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ EK + R + LD GYV
Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLDVY-------------------SILASESLKGYV 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A V IK P+V G + P V EIE ++ E
Sbjct: 44 LVEAESKGDVEELIKGMPRVRGIV-----PGTVAIEEIEPLLTP-------KKIIENIEK 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V + GPF V VD+ K V +E+ P+ L+ V+ I
Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKNKEEVTLELENATVPIPITLSVEGVKII 142
>gi|329965206|ref|ZP_08302137.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328523569|gb|EGF50666.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 206
Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 22/167 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ Y N E A + + + E IP ++V+ KG+KV
Sbjct: 28 WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 79
Query: 65 VLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115
V + A + D ++ D V G V D ++ + + + A +
Sbjct: 80 VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 139
Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ + E G+RV V GPF G V +++ R V +
Sbjct: 140 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 186
>gi|327401544|ref|YP_004342383.1| NusG antitermination factor [Archaeoglobus veneficus SNP6]
gi|327317052|gb|AEA47668.1| NusG antitermination factor [Archaeoglobus veneficus SNP6]
Length = 151
Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 31/154 (20%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
R++ ++ +N E+ + + + L V I P E G
Sbjct: 3 RFFAIKTTANQERVVANLMEMAVKKYELG--VYSILAPKE-----------------LKG 43
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
YV+++A + + I+ P V G + V SEIEH + +AA Q
Sbjct: 44 YVIVEAEKMEDLLKAIRGLPHVKGVVKGE-----VNFSEIEHFLTPRKAAEQ-------I 91
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G V + GPF +VK VDE K+ + VE+
Sbjct: 92 KEGFTVEIISGPFKGELAVVKRVDEAKNEITVEL 125
>gi|289192633|ref|YP_003458574.1| NusG antitermination factor [Methanocaldococcus sp. FS406-22]
gi|288939083|gb|ADC69838.1| NusG antitermination factor [Methanocaldococcus sp. FS406-22]
Length = 147
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 31/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ EK + R + L+ GYV
Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLNVY-------------------SILASESLKGYV 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A V IK P+V G + P + EIE ++ E
Sbjct: 44 LVEAETKGDVEELIKGMPRVRGIV-----PGTIAIEEIEPLLTP-------KKIIENIEK 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
G+ V + GPF V VD+ K V +E+
Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKNKEEVTLELE 124
>gi|253567525|ref|ZP_04844959.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251943661|gb|EES84247.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 279
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV +++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|452791|emb|CAA51490.1| nusG protein [Synechocystis sp. PCC 6803]
Length = 29
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
E+S++ + IFGR TPVEL + QVEK
Sbjct: 1 ERSKLKALLSIFGRETPVELEFTQVEK 27
>gi|255014894|ref|ZP_05287020.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
Length = 186
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ K +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDKISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV +++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFVRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEV 179
>gi|326634532|pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP
CLAMP DOMAIN
Length = 163
Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 37/158 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M + + V+V E+ + I ++ L + I PS
Sbjct: 1 MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR----------------- 41
Query: 61 FPGYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
GY+ ++A + D+ I+ V+ P V EIEH + +
Sbjct: 42 VKGYIFVEAPNKGVVDEAIRGIRHARGVL--------PGEVPFKEIEHFL-------EEK 86
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ E G+ V V GPF V +DE K V V
Sbjct: 87 PAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124
>gi|237732782|ref|ZP_04563263.1| predicted protein [Mollicutes bacterium D7]
gi|229384152|gb|EEO34243.1| predicted protein [Coprobacillus sp. D7]
Length = 165
Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 17/164 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V+SN K + ++ R IP V + K + + F Y
Sbjct: 3 WYVLYVFSNKTNKILSNLNQRKE--------LTAFIPKTEVFHRQA--KKKTTKDMFDNY 52
Query: 65 VLIKAVMTDKVYHTIK-----DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ +K+ + ++ + +I L S + + EIE N ++ VS
Sbjct: 53 IFVKSDLKQNDFNDLLLSMKDKNDGLIKQL-ENAEVSALREKEIEFFNNILDKDNVARVS 111
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
+ E G+ + +++GP + + V + +++ F R
Sbjct: 112 VGYQEEGKTI-ITEGPLLHYQDHIVRVMKHHCTAQLDLPFFDRK 154
>gi|319901978|ref|YP_004161706.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319417009|gb|ADV44120.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
Length = 178
Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 14/164 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-TEITIPSERVVSVRKGRKVNSERRFF 61
W+ + S E R+ + L+ + E +P+ VV+ K R+ S
Sbjct: 6 KYWFAARTLSKQEFAVQ----KRIEKLNLEEKMDVECYLPTRTVVTQLKYRRKRSVVPVA 61
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPV 118
G + I A T + I + V F + + V D +++ M ++
Sbjct: 62 RGLIFIHA--TKQSACDIPNIYGVQVFYMKDLSTHSMLVVPDKQMQDFMFVMDLNPDGVS 119
Query: 119 SSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+G +V V G F+ G + E ++ +V + I G
Sbjct: 120 FDNEPLTIGRKVTVVKGEFSGIEG---EIATEANKTYVVIRITG 160
>gi|330998517|ref|ZP_08322339.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
gi|329568281|gb|EGG50093.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
Length = 502
Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 37/175 (21%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++++ + E+K + + L ++ + E P+ + + + ++ F G
Sbjct: 15 RWFVIRTLPHQERKLTDLLSAHLPQA---PNILEAYCPTHTTADI-GSKGRDVQQPLFAG 70
Query: 64 YVLIKAVMTDKVYHTI--------------KDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
YV + + V I KD GFL + + +I +
Sbjct: 71 YVFV-LSTQEAVADFIGKYYPDGTLLYERKKDDRHKAGFL-------TIPEEQIRFFKDF 122
Query: 110 VEAAV------QRPVSSVFF-----EVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
E ++P S F E E V V DGP G + E+ V
Sbjct: 123 NENYAEHVIVLEKPYSDYAFNPKTNEPNEIVKVLDGPLKGREGYLTRFHRERRLV 177
>gi|297527348|ref|YP_003669372.1| NusG antitermination factor [Staphylothermus hellenicus DSM 12710]
gi|297256264|gb|ADI32473.1| NusG antitermination factor [Staphylothermus hellenicus DSM 12710]
Length = 159
Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 32/155 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHL---VTEITIPSERVVSVRKGRKVNSERRFFP 62
Y ++ E I R+ + V I +P
Sbjct: 10 YALRTTMGREIDVALVIESRIKDLKKQNRDPGVKAIFVP-----------------PGVR 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++ +Y I + V P V+ E+E ++ +PV +
Sbjct: 53 GYVFLETSRLASIYRLISEVKYV-----KSGQPIKVSLEEVERLVKP------KPVIEM- 100
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+ V + GPF V ++D K+ V + +
Sbjct: 101 IKEGDIVEIVRGPFRGMKAQVISIDRNKNMVVLSI 135
>gi|292654882|ref|YP_003534779.1| transcription antitermination protein NusG-like protein [Haloferax
volcanii DS2]
gi|291370778|gb|ADE03005.1| transcription antitermination protein NusG homolog [Haloferax
volcanii DS2]
Length = 150
Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV+++A V +++ P G + +G + +E+EH ++
Sbjct: 39 SYVMVEADDDGIVTRVLEEIPHARGLVESGGAVGTSSMAEVEHFLSPTPDVE-------G 91
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 92 IAEGDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143
>gi|18978362|ref|NP_579719.1| transcription antitermination protein NusG [Pyrococcus furiosus DSM
3638]
gi|320089854|pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus
Transcription Elongation Factor Spt45
gi|320089856|pdb|3P8B|D Chain D, X-Ray Crystal Structure Of Pyrococcus Furiosus
Transcription Elongation Factor Spt45
gi|18894196|gb|AAL82114.1| transcription antitermination protein nusG [Pyrococcus furiosus DSM
3638]
Length = 152
Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 37/158 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M + + V+V E+ + I ++ L + I PS
Sbjct: 1 MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR----------------- 41
Query: 61 FPGYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
GY+ ++A + D+ I+ V+ P V EIEH + +
Sbjct: 42 VKGYIFVEAPNKGVVDEAIRGIRHARGVL--------PGEVPFKEIEHFL-------EEK 86
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ E G+ V V GPF V +DE K V V
Sbjct: 87 PAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124
>gi|212694234|ref|ZP_03302362.1| hypothetical protein BACDOR_03760 [Bacteroides dorei DSM 17855]
gi|212663221|gb|EEB23795.1| hypothetical protein BACDOR_03760 [Bacteroides dorei DSM 17855]
Length = 190
Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 22/167 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++VY N E A + + + E IP ++V+ KG+KV
Sbjct: 12 WYVMRVYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 63
Query: 65 VLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115
V + A + D ++ D V G V D ++ + + + A +
Sbjct: 64 VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 123
Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ + E G+RV V GPF G V +++ R V +
Sbjct: 124 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 170
>gi|289806726|ref|ZP_06537355.1| transcription antitermination protein NusG [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 38
Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL 34
RWY+VQ +S E + S+ + ++ L
Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEEL 38
>gi|14010731|ref|NP_114217.1| hypothetical protein pFKN_p27 [Pseudomonas syringae pv. maculicola
str. M6]
gi|13926148|gb|AAK49559.1|AF359557_24 unknown [Pseudomonas syringae pv. maculicola str. M6]
Length = 188
Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRF 60
WY++ +S+ + R + E+ P+ R R + E R
Sbjct: 20 KNWYVLM----HNSAVYQSLITLIERLDV-----EVYSPTRTTSRKRTDRPSSIEKEVRL 70
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ TI GF+ G + D +E + RP+
Sbjct: 71 FPGYLLLRFDPEVTHTTTITALNGAHGFVQFGGRTCVMQDCTVEKLKETALVRANRPLDC 130
Query: 121 VFF 123
+ F
Sbjct: 131 IEF 133
>gi|301310600|ref|ZP_07216539.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 20_3]
gi|300832174|gb|EFK62805.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 20_3]
Length = 190
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 25/167 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++++ Y N EK A + + + E IP V G K P
Sbjct: 19 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSKKLVPVIPS 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAVQR 116
+ + A + I + K FL TG V D +++ + +
Sbjct: 71 LLFVHA-----SHSQITEFKKRYNFLQFAMWEKSTGAEYITVPDDQMDSFIKIASHYEED 125
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158
V + + G RVC+ G F + G+ V ++ RV V +
Sbjct: 126 TVYYRPEEIDLKRGMRVCIHGGKFDNVKGMFVRVQGKRNRRVVVLLE 172
>gi|255022915|ref|ZP_05294901.1| transcription antitermination protein NusG [Listeria monocytogenes
FSL J1-208]
Length = 27
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
K + V V +FGR TPVE+ +NQ+EK+
Sbjct: 1 KGKAKVMVNMFGRETPVEVDFNQIEKL 27
>gi|76801059|ref|YP_326067.1| transcription antitermination protein NusG [Natronomonas pharaonis
DSM 2160]
gi|76556924|emb|CAI48498.1| transcription antitermination protein homolog [Natronomonas
pharaonis DSM 2160]
Length = 146
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV+++A T + ++D P + E PSP + E+EH ++ P V
Sbjct: 39 SYVMVEADDTAAISRALEDIPHARTLV--SEQPSPFS--EVEHFLS--------PKPDVE 86
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 87 GIAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 139
>gi|261403043|ref|YP_003247267.1| NusG antitermination factor [Methanocaldococcus vulcanius M7]
gi|261370036|gb|ACX72785.1| NusG antitermination factor [Methanocaldococcus vulcanius M7]
Length = 147
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 50/153 (32%), Gaps = 31/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ EK + R + LD GYV
Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLDVH-------------------SILASESLKGYV 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A V IK P++ G + P ++ EIE ++ E
Sbjct: 44 LVEAETKGDVEELIKGMPRIRGIV-----PGTISIEEIEPLLTP-------KKIIENIEK 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
G+ V + GPF V VD+ K V +E+
Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKHKEEVTLELE 124
>gi|53714952|ref|YP_100944.1| putative transcriptional regulator UpxY-like protein [Bacteroides
fragilis YCH46]
gi|52217817|dbj|BAD50410.1| putative transcriptional regulator UpxY homolog [Bacteroides
fragilis YCH46]
gi|301164392|emb|CBW23950.1| putative LPS biosynthesis related transcriptional regulatory
protein [Bacteroides fragilis 638R]
Length = 208
Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 25/167 (14%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY V+ YS E E + G + IP V+ R+V
Sbjct: 38 WYAVRVTYSR-ELALKEYLDGECIEN---------FIPMHYEYIVKNERRVRKLVPAVHN 87
Query: 64 YVLIKAVMTDKVYHTIKDTPKVI---GFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V I++ + + IKD + ++ P V S++ M + Q+ V
Sbjct: 88 LVFIRS--SRERIDRIKDEMGMTLPIRYIMDRESRQPIVVPTSQMRSFMAVAGSYDQQLV 145
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S+V F G+RV V+ G FA G V ++ V V I G
Sbjct: 146 YLEPSAVAFRKGQRVRVTGGIFAGVEGEFIRVKNDR---RVMVSIQG 189
>gi|317480623|ref|ZP_07939711.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|316903249|gb|EFV25115.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 190
Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 22/167 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++ Y N E A + + + E IP ++V+ KG+KV
Sbjct: 12 WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 63
Query: 65 VLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115
V + A + D ++ D V G V D ++ + + + A +
Sbjct: 64 VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 123
Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ + E G+RV V GPF G V +++ R V +
Sbjct: 124 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 170
>gi|296110023|ref|YP_003616972.1| NusG antitermination factor [Methanocaldococcus infernus ME]
gi|295434837|gb|ADG14008.1| NusG antitermination factor [Methanocaldococcus infernus ME]
Length = 146
Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GY+ ++A +++ IK PKV G++ + EIE +++ + +
Sbjct: 39 LKGYIFVEADNEEELKTLIKGVPKVKGYVRG-----VIPLEEIEPLLSPKKIVEE----- 88
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
E G+ V + GPF V VD+ K + +E+
Sbjct: 89 --IEKGDVVEIVAGPFKGERAKVIRVDKNKEEITLEL 123
>gi|167755355|ref|ZP_02427482.1| hypothetical protein CLORAM_00869 [Clostridium ramosum DSM 1402]
gi|167704294|gb|EDS18873.1| hypothetical protein CLORAM_00869 [Clostridium ramosum DSM 1402]
Length = 232
Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 14/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYI+ + K + + + + +P + + G+KV +E FP Y
Sbjct: 67 WYIIFA---NDNKINDLLLYFNNHPEMTA-----FVPKIEKLMKKDGKKVFAEVPMFPNY 118
Query: 65 VLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ I++ + ++ I KD + + + E + + ++ +
Sbjct: 119 IFIESEFNSQEFYQIIESLEKDMDSTMRIMQSDEQKVLSLANNEKELLESLFNDDHLITR 178
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
S+ ++ V GP ++K +D K + +FG+ V L
Sbjct: 179 SMGTITDSKLIVQKGPLVGKEEMIKKIDRHKRVAFIG-DVFGKTMKVPLE 227
>gi|301629057|ref|XP_002943665.1| PREDICTED: 50S ribosomal protein L1-like [Xenopus (Silurana)
tropicalis]
Length = 196
Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-------------GLDHLVTEIT 39
RWYIV YS EK +I R+ R+ G+D L ++
Sbjct: 22 RWYIVHAYSGMEKAVERNITERIMRAKAEEAKAAGADIVGMDDLAAQVK 70
>gi|167754736|ref|ZP_02426863.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402]
gi|167705568|gb|EDS20147.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402]
Length = 169
Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 17/164 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V+SN K + ++ R IP V + K + + F Y
Sbjct: 7 WYVLYVFSNKTNKILSNLNQRKE--------LTAFIPKTEVFHRQA--KKKTTKDMFDNY 56
Query: 65 VLIKAVMTDKVYHTIK-----DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ +K+ + ++ + +I L S + + EIE N V
Sbjct: 57 IFVKSDLKQNDFNDLLLSMKDKNDGLIKQL-ENAEVSALREKEIE-FFNNVLDKDNVARV 114
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
SV ++ + +++GP + + V + +++ F R
Sbjct: 115 SVGYQEEGKTIITEGPLLHYQDYIVRVMKHHCTAQLDLPFFDRK 158
>gi|255013307|ref|ZP_05285433.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
Length = 186
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 4 RWYIVQ---VYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
RWY++ + +S+ LSR + E PS V G+ VN++
Sbjct: 27 RWYVLTLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL-----GTGENPSPVTDSEIEHIMNQVEA 112
R YV I++ + + +K T + FL G + ++D E+ ++ E+
Sbjct: 87 RPLLFNYVFIRS--SVEEIFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144
Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIV 143
V G+RV ++ G F V
Sbjct: 145 YSNELPVYVPDSNRLLKGDRVRITSGYFTGMEAEV 179
>gi|256842209|ref|ZP_05547713.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|301308961|ref|ZP_07214906.1| putative transcription termination factor NusG [Bacteroides sp.
20_3]
gi|256736093|gb|EEU49423.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|300832987|gb|EFK63612.1| putative transcription termination factor NusG [Bacteroides sp.
20_3]
Length = 179
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++V+ K E I L + +D P E V +R G + +
Sbjct: 11 WFALKVFY---NKVFE-IEESLKKDDIDCYF-----PCEYAVVMRNGVRKIIRKPIISSI 61
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP-- 117
+ + + + T KVI L T + P + D E+ M + +
Sbjct: 62 LFFHSTTLRAMEIQRQFTDKVI--LYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEY 119
Query: 118 --VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
S F GERV V DG F G + + ++ SR+ V +
Sbjct: 120 LGADSTKFCRGERVRVIDGKFKGAEGYICRI-KKNSRLVVAI 160
>gi|49206933|ref|YP_026130.1| AnfA1 [Serratia entomophila]
gi|48995180|gb|AAT48331.1| AnfA1 [Serratia entomophila]
Length = 148
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGR-LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
M +WY+++ +G + L G++ P+E V + +
Sbjct: 1 MKKKWYLIRC-----NYGKIDLGQKSLEAMGVECFCPR-LSPAELKVLFDNKKNFSKGWC 54
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
FP Y+ ++ + I+ V GF+ G + + D I IM
Sbjct: 55 IFPPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGINSIPDIVIGKIMK 103
>gi|189466124|ref|ZP_03014909.1| hypothetical protein BACINT_02494 [Bacteroides intestinalis DSM
17393]
gi|189434388|gb|EDV03373.1| hypothetical protein BACINT_02494 [Bacteroides intestinalis DSM
17393]
Length = 178
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 26/167 (15%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + + G IP + +SV+KG+KV
Sbjct: 10 WYAMRATYRRELDAMRLLEK--EKLG-------CFIPMQYKISVKKGKKVRVLMPVIHNL 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL------GTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
V + A ++ +K I +L +G+ + D++++ +
Sbjct: 61 VFVHACPSE-----VKRVKSQINYLQYITDTRSGQKII-IPDNDMQRFIAVAGTYNDHLL 114
Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G RV + G F G+ V + R V + I G
Sbjct: 115 YFQPDELNLSKGTRVRIIGGDFEGQEGLFLKVKGARDR-RVVIEIQG 160
>gi|150399496|ref|YP_001323263.1| transcription antitermination protein NusG [Methanococcus vannielii
SB]
gi|150012199|gb|ABR54651.1| NusG antitermination factor [Methanococcus vannielii SB]
Length = 146
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 32/172 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + EK E++ + + L+ V I GY+
Sbjct: 3 FAVRTTNGQEKNVAEALATKAEKENLE--VFSIL-----------------ATEDLKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + ++ + KV G + P T +E++H++ +
Sbjct: 44 LVEAANKGALDELVRKSFKVKGIV-----PGETTVNELDHLLTPTKIIENIDK------- 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
G+ V + GPF V VD+ K + +E++ P+ + QV KIV
Sbjct: 92 GDVVELVGGPFKGERARVTRVDKNKEEITLELIDAAVPIPITVGVEQV-KIV 142
>gi|2499342|sp|Q46494|NUSG_ACIAM RecName: Full=Putative transcription antitermination protein nusG
gi|1217623|emb|CAA65235.1| nusG protein [Acidianus ambivalens]
Length = 152
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 30/171 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+V E + R + + + I +P GYV
Sbjct: 9 YAVKVTGGQEVSVGLMLEERAKTNNIPE-IYSIIVP-----------------PGLKGYV 50
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V I V G V I + V + V+ +
Sbjct: 51 IVEASGPHVVKLLIAGIRHVRGIAQGL-----VPKDHIVKM-------VSKKVTGPTIKE 98
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V GPF V V E K V + ++ V + +QV+ +
Sbjct: 99 GDLVEVVSGPFRGMQAQVVKVTEGKGEVVLNILESAFPLQVTIPVDQVKPV 149
>gi|84498526|ref|ZP_00997296.1| putative secreted protein [Janibacter sp. HTCC2649]
gi|84381269|gb|EAP97153.1| putative secreted protein [Janibacter sp. HTCC2649]
Length = 438
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P P+ I + V F G+ V ++ G + + V VD K+ V
Sbjct: 361 PVPLP-----KITATPLPSTTVAVDPDPFSPGDTVKITAGQYLGLSAKVLKVDTVKNTVT 415
Query: 155 VEVVIFGRVTPVELAYNQV 173
VEVV+ G PV L Y+ V
Sbjct: 416 VEVVVLGIKLPVVLPYSSV 434
>gi|319901939|ref|YP_004161667.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319902283|ref|YP_004162011.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319902419|ref|YP_004162147.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319416970|gb|ADV44081.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319417314|gb|ADV44425.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319417450|gb|ADV44561.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
Length = 178
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 24/166 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + + +P + VS+R+GRKV +
Sbjct: 10 WYAMRATYRREPDAMRLLEK--------EQIG-CFVPMQYKVSLRRGRKVRALVPVVHNL 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-----GENPSPVTDSEIEHIMNQVEAAVQR--- 116
+ + A+ + +K + +L + D E++ +
Sbjct: 61 LFVHALPS-----ALKRVKSQVSYLQYITDTRSGRKIIIPDHEMQRFIAVAGTYNDHLLY 115
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V V+ G F GI V + R V V I G
Sbjct: 116 FRPEDLNLSKGTKVRVTGGDFEGQEGIFLKVKGARDR-RVVVQIQG 160
>gi|48477517|ref|YP_023223.1| transcription antitermination protein NusG [Picrophilus torridus
DSM 9790]
gi|48430165|gb|AAT43030.1| hypothetical transcription antitermination protein NusG
[Picrophilus torridus DSM 9790]
Length = 285
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 32/162 (19%)
Query: 17 KAVESIGGR-LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75
KA + R +S + + I P E GY+ I+ + D+V
Sbjct: 151 KAETDLKERLISNKNARNEILSIMSPYE-----------------IKGYIFIETMHVDRV 193
Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FEVGERVCVSDG 134
+ + G + V+ EIEH + P +V +G+ V + G
Sbjct: 194 EYLARTLRNFKGIISGT-----VSMDEIEHYL--------TPKPAVSGLSLGDLVEIVGG 240
Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
PF + ++D K V V++ PV + + +
Sbjct: 241 PFKGERAKIMSIDASKEEVTVQLTESMVPIPVTVKAESIRPL 282
>gi|304314031|ref|YP_003849178.1| transcription antitermination protein NusG [Methanothermobacter
marburgensis str. Marburg]
gi|302587490|gb|ADL57865.1| predicted transcription antitermination protein NusG
[Methanothermobacter marburgensis str. Marburg]
Length = 159
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 27/172 (15%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++ EK + ++ SG++ + I +P GY+
Sbjct: 9 YALKTSVGQEKNVARMLARKVRDSGIE--INAILVPE-----------------SLRGYI 49
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
L+++ + + P + G + G E S + E++ + +
Sbjct: 50 LVESSSKIDMRNPAIRVPHLRGVVEGKTEGESKIEFEEVKRFLKPEPIIS-------SIK 102
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V + GPF V +DE + V +E++ PV + +Q+ I
Sbjct: 103 KGSIVELISGPFKGERAKVIRIDESREEVVLELIEAAVPIPVTVKGDQIRII 154
>gi|153808766|ref|ZP_01961434.1| hypothetical protein BACCAC_03066 [Bacteroides caccae ATCC 43185]
gi|149128592|gb|EDM19810.1| hypothetical protein BACCAC_03066 [Bacteroides caccae ATCC 43185]
Length = 182
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV-IG 87
L E+ P + + ++ G+++ E F + I + + ++ P +
Sbjct: 29 KQLSDEHLEVFTPMQWRLKLKNGKRIREEVPFMQDLLFIH-DTREVLDLFVRKIPTLQYR 87
Query: 88 FLGTGE--NPSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNG 141
+ G P V D ++E + V + P G + + GPF + G
Sbjct: 88 YQKGGGYCQPMMVADLDMERFIRAVRGSENPKYYLPEEISDTMYGRMIRIIGGPFEGYEG 147
Query: 142 IVKNVDEEK-SRVHVEV-VIFGRVTPVELAYNQVEKI 176
+ K R+ VE+ F VE+ + +E I
Sbjct: 148 RLLTTRGSKVKRLLVELPNFF--SVGVEVNPDLIEII 182
>gi|319902061|ref|YP_004161789.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319417092|gb|ADV44203.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
Length = 177
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 12/161 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + E S+ + LD + +P+ V++ K R+ SE
Sbjct: 6 KYWFAARTRDKQEFAIRNSLEKLKAEENLD---IDCYLPTRSVITQLKYRRKRSEVPVIR 62
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ + A T ++ I + V F + V + ++E M ++
Sbjct: 63 NLIFVHA--TKQIACDISNVYGVQLFYMKDLFSHSMLVVPNKQMEDFMFVMDLNPNGVSF 120
Query: 120 SVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
VG +V V G F G V E ++ +V + I
Sbjct: 121 DNDSLAVGNKVKVIKGDFCGIEG---EVATEANKTYVIIRI 158
>gi|329955864|ref|ZP_08296667.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|328525244|gb|EGF52294.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 171
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 14/143 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ V V N E K + E+ +P + V G++V +
Sbjct: 8 KHWHAVYVRHNTEFKVETWLR---------EQGVEVYLPVQDVFLEYAGKRVKVTKPVIT 58
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV--TDSEIEHIMNQVEAAVQRP-VS 119
G V + ++ ++ P V F +P+ D ++ V+ + +
Sbjct: 59 GMVFV--CLSRSELSVVEQAPNVHHFFSKRGTNAPLVIPDQQMADFRFMVDLSDTSILMV 116
Query: 120 SVFFEVGERVCVSDGPFASFNGI 142
+ G V V+ G G
Sbjct: 117 NEPITPGTMVTVAKGSMQGVRGE 139
>gi|308805116|ref|XP_003079870.1| unnamed protein product [Ostreococcus tauri]
gi|116058327|emb|CAL53516.1| unnamed protein product [Ostreococcus tauri]
Length = 417
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 78/229 (34%), Gaps = 67/229 (29%)
Query: 5 WYIVQVYSNCEKKAVESIGG-------RLSRSGLDHLVTEI----TIPSERVVSVRK--- 50
W++++ N E++A E I R R L V + +E +
Sbjct: 183 WFMLETAENREERAREMILALNGTKLTREQREPLVAWVPRVPRDNFYLTEEDAEGKSELE 242
Query: 51 -----GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN----------P 95
G + +E PGYVL++ +T + D V GF G +
Sbjct: 243 LCQMVGEEDMAEM-IQPGYVLVRCTLTQTLTDAFNDLWSVRGFATGGSSRFGKKSYEKLN 301
Query: 96 SPVT-DSEIEHIMNQV-------------------------------EAAVQRPVSSVFF 123
P++ D +I ++ + E +
Sbjct: 302 QPLSMDDQIPRMIRKCVPVVKTDEQVKADEARVEVQEVARAGRQERDENDGDDLRPTSSS 361
Query: 124 EVG----ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
EVG +R+ V DGPF F G + + +++ V + IFGR T V L
Sbjct: 362 EVGAATYDRIEVHDGPFKGFKGFIVSENDD-GSVEATLAIFGRDTNVTL 409
>gi|60682927|ref|YP_213071.1| putative LPS biosynthesis related transcriptional regulatory
protein [Bacteroides fragilis NCTC 9343]
gi|253566058|ref|ZP_04843512.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265766805|ref|ZP_06094634.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|60494361|emb|CAH09157.1| putative LPS biosynthesis related transcriptional regulatory
protein [Bacteroides fragilis NCTC 9343]
gi|251945162|gb|EES85600.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263253182|gb|EEZ24658.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 179
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 25/167 (14%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY V+ YS E E + G + IP V+ R+V
Sbjct: 9 WYAVRVTYSR-ELALKEYLDGECIEN---------FIPMHYEYIVKNERRVRKLVPAVHN 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVI---GFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V I++ + + IKD + ++ P V S++ M + Q+ V
Sbjct: 59 LVFIRS--SRERIDRIKDEMGMTLPIRYIMDRESRQPIVVPTSQMRSFMAVAGSYDQQLV 116
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
S+V F G+RV V+ G FA G V ++ V V I G
Sbjct: 117 YLEPSAVAFRKGQRVRVTGGIFAGVEGEFIRVKNDR---RVMVSIQG 160
>gi|60680713|ref|YP_210857.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|253563454|ref|ZP_04840911.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|60492147|emb|CAH06910.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|251947230|gb|EES87512.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301162257|emb|CBW21802.1| putative transcriptional regulator [Bacteroides fragilis 638R]
Length = 174
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 26/183 (14%)
Query: 1 MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
MT + WY+ S E++ + + R R+ +P ++ +GR +
Sbjct: 9 MTEKQSCHWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRSREA 59
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEH---IMNQVEA 112
VLI ++D I+ + G + V + ++E + +Q++
Sbjct: 60 LCPQIARCVLIWTSLSD-----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDT 114
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
AV+ E V V+ GP G + D R+ + G V +
Sbjct: 115 AVEW--IPDCLESATMVRVTGGPLTGLVGELDTSDTG-FRIRIRFHSMG-CFRVAVPEEW 170
Query: 173 VEK 175
+EK
Sbjct: 171 IEK 173
>gi|319901772|ref|YP_004161500.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319416803|gb|ADV43914.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
Length = 178
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 24/166 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + + +P + VS+R+GRKV +
Sbjct: 10 WYAMRATYRREPDAMRLLEK--------EQIG-CFVPMQYKVSLRRGRKVRALVPVVHNL 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-----GENPSPVTDSEIEHIMNQVEAAVQR--- 116
+ + A+ ++ +K + +L + D E+ +
Sbjct: 61 LFVHALPSE-----LKRVKSQVSYLQYITDTRSGRKIIIPDHEMRRFIAVAGTYNDHLLY 115
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V V+ G F GI V + R V V I G
Sbjct: 116 FRPEDLNLSKGTKVRVTGGDFEGQEGIFLKVKGARDR-RVVVQIQG 160
>gi|294674459|ref|YP_003575075.1| hypothetical protein PRU_1784 [Prevotella ruminicola 23]
gi|294472582|gb|ADE81971.1| conserved domain protein [Prevotella ruminicola 23]
Length = 321
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 72/185 (38%), Gaps = 24/185 (12%)
Query: 4 RWYIVQVYS-NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY++ S + E+K +++ RS +P + V + ++ +
Sbjct: 10 KWYVLGCLSVHHEEKVRDALRKAGFRSH---------VPMKYEVKTVRRQEQRTMVPAIT 60
Query: 63 GYVLIKAV---MTDKVYHTIKD---TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
G + ++A + + + H ++ K ++ V D +E + ++
Sbjct: 61 GLIFVRATEEALKEYIRHKSRESIYMRKST--FSNKQDYLTVPDYAMERFIEFTNIRQEK 118
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR-VTPVELAYN 171
+ + GE++ + G + + G + ++++ H+ V I G + VEL
Sbjct: 119 ITYFKPEELNLKEGEKIRIKGGIYDGYEGTILRFKGKRNK-HLVVQIPGVIIAAVELEPE 177
Query: 172 QVEKI 176
VE +
Sbjct: 178 LVEPL 182
>gi|329964950|ref|ZP_08301958.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328524591|gb|EGF51659.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 178
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + S E + I +D E +P+ VV+ K R+ S
Sbjct: 6 KYWFAARTLSKQEFAVQKRIEKLKLEEKMD---VECYLPTRTVVTQLKYRRKRSIVPVAR 62
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
G + I A T + I + V F + + V D +++ M ++
Sbjct: 63 GLIFIHA--TKQCACDIPNIYGVQVFYMKDLSTHSMLVVPDKQMQDFMFVMDLNPDGVSF 120
Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+G++V V G F+ G + E ++ +V + I G
Sbjct: 121 DNEPLTIGKKVTVIKGEFSGIEG---EIATEANKTYVVIRITG 160
>gi|84490055|ref|YP_448287.1| transcription antitermination protein NusG [Methanosphaera
stadtmanae DSM 3091]
gi|84373374|gb|ABC57644.1| putative transcription antiterminator [Methanosphaera stadtmanae
DSM 3091]
Length = 147
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++V EK + + ++ I P GY+
Sbjct: 3 YAMRVLIGQEKNVASLLAQSVKHEDTG--ISAILSPE-----------------SMKGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++ T + H P + G + V E++ ++ S V E
Sbjct: 44 FVESDKTLDMRHPALKVPNLRGLVEGD-----VDFDELKSFLSP-------DQSIVNIEK 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V ++ GPF V +DE K V +E++ PV + +Q+ I
Sbjct: 92 GSIVELTSGPFKDEKAKVVRIDEAKEDVVLELIEAAVPIPVTVKGDQIRLI 142
>gi|331660394|ref|ZP_08361329.1| putative transcription termination factor NusG [Escherichia coli
TA206]
gi|331052661|gb|EGI24697.1| putative transcription termination factor NusG [Escherichia coli
TA206]
Length = 178
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTD 100
+R+ K+ + R FPGY +K + ++ I+ I F+ GTG P PV+D
Sbjct: 47 RIRRTDKIRAYRTRVQAVFPGYFFLKVNLAEQSAAGIRRHSGFIDFVTFGTGSEPVPVSD 106
Query: 101 SEIEHIMN 108
+ +MN
Sbjct: 107 CLVRSLMN 114
>gi|253566342|ref|ZP_04843796.1| UpdY [Bacteroides sp. 3_2_5]
gi|251945446|gb|EES85884.1| UpdY [Bacteroides sp. 3_2_5]
Length = 179
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY ++ YS E E + R R+ +P R RK+
Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQV-------E 111
V + A ++ +K T I ++ E P+T E+ + + + E
Sbjct: 57 HNLVFVYATRSEV--DEMKSTVGASLPIRYIMDRETRQPITIPEV-QMRSFIAVAGNYDE 113
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V S V + G+RV V+ G F G + ++ V V I G
Sbjct: 114 QVVYLDPSVVSMKRGDRVRVTGGIFEGVEGEFVRIKGDR---RVVVSIQG 160
>gi|265762678|ref|ZP_06091246.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255286|gb|EEZ26632.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 174
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 26/183 (14%)
Query: 1 MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
MT + WY+ S E++ + + R R+ +P ++ +GR +
Sbjct: 9 MTEKQSCHWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRSREA 59
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEH---IMNQVEA 112
VLI ++D I+ + G + V + ++E + +Q++
Sbjct: 60 LWPQIARCVLIWTSLSD-----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDT 114
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
AV+ E V V+ GP G + D R+ + G V +
Sbjct: 115 AVEW--IPDCLESATMVRVTGGPLTGLVGELDTSDTG-FRIRIRFHSMG-CFRVAVPEEW 170
Query: 173 VEK 175
+EK
Sbjct: 171 IEK 173
>gi|312136370|ref|YP_004003707.1| lsu ribosomal protein l24a [Methanothermus fervidus DSM 2088]
gi|311224089|gb|ADP76945.1| LSU ribosomal protein L24A [Methanothermus fervidus DSM 2088]
Length = 150
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 31/174 (17%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M + Y ++ + EK + ++ S +D ++ I +
Sbjct: 1 MKSKIYALKTSAGQEKNVARMLTKKVKNSDID--ISAILV-----------------SES 41
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GY+L+++ + + I P + G + V EIE +
Sbjct: 42 LKGYILVESSSKLDMRNPIFRMPHLRGIVEGS-----VKFKEIEKFLKP-------EPIV 89
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ G V + GPF V VDE K V +E++ PV + +QV
Sbjct: 90 TSIKRGSIVELIAGPFKGERAKVIRVDESKEEVVLELIEAAVPIPVTVKADQVR 143
>gi|268323264|emb|CBH36852.1| putative transcription antitermination protein nusG [uncultured
archaeon]
Length = 155
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 30/153 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKGRKVNSERRFFPGY 64
Y V+ N E + G L G+ + I +P E GY
Sbjct: 5 YAVKTTVNQELAVATMVEGALGEEGVKDHGIKAIMVPEE-----------------LKGY 47
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+L++A + + I+ P G + + E+EH + S
Sbjct: 48 LLVEASFPEALEQIIQSIPHARGLVKG-----VMGLEEVEHFLTP-------KPSVTGIL 95
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + + GPF VK VDE + +E+
Sbjct: 96 EGSIIEIVSGPFKGERARVKKVDEAHEEITIEL 128
>gi|255010638|ref|ZP_05282764.1| putative transcriptional regulator Updx-like protein [Bacteroides
fragilis 3_1_12]
gi|313148449|ref|ZP_07810642.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137216|gb|EFR54576.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 179
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 25/169 (14%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY ++ YS E E + R ++ +P R RK+
Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVKN---------FLPMRYEYVFRGERKIRKLVPVV 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQR 116
V + A ++ +K T I ++ E P + + ++ + ++
Sbjct: 57 HNLVFVYATRSEV--DEMKSTVGASLPIRYIMDRESCQPITIPEVQMRSFIAVAGNYDEQ 114
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V S+V + G+RV V+ G F G + ++ V V I G
Sbjct: 115 VVYLDPSAVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR---RVVVSIQG 160
>gi|163803075|ref|ZP_02196960.1| hypothetical protein 1103602000564_AND4_05414 [Vibrio sp. AND4]
gi|159173153|gb|EDP57983.1| hypothetical protein AND4_05414 [Vibrio sp. AND4]
Length = 152
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK---GRKVNSERR 59
WY+V S + L+ E+ P RK G+ +
Sbjct: 2 KNWYLVYC------NVKNS-RRDVLIRFLNSFGVEVFNPIMTYYKARKDRPGKFRKQTKS 54
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
F Y+ I+ T + + + FL + + + + IE++
Sbjct: 55 LFSNYMFIQFDCTKFSFSKFDNIEGISYFLRSSGQIATIPEPLIENLR 102
>gi|154494124|ref|ZP_02033444.1| hypothetical protein PARMER_03469 [Parabacteroides merdae ATCC
43184]
gi|154086384|gb|EDN85429.1| hypothetical protein PARMER_03469 [Parabacteroides merdae ATCC
43184]
Length = 190
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 25/167 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++++ Y N EK A + + + E IP V G K P
Sbjct: 19 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSKKLVPVIPS 70
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAVQR 116
+ + A + I + K FL TG V D +++ + +
Sbjct: 71 LLFVHA-----SHSQITEFKKRYNFLQFAMWEKSTGVEYITVPDDQMDSFIKIASHYEED 125
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158
V + + G RVC+ G F + G+ V ++ RV V +
Sbjct: 126 TVYYRPEEIDLKRGMRVCIHGGKFDNVKGMFVRVQGKRNRRVVVLLE 172
>gi|53715209|ref|YP_101201.1| putative transcriptional regulator Updx-like protein [Bacteroides
fragilis YCH46]
gi|265767038|ref|ZP_06094867.1| UpdY [Bacteroides sp. 2_1_16]
gi|52218074|dbj|BAD50667.1| putative transcriptional regulator Updx homolog [Bacteroides
fragilis YCH46]
gi|263253415|gb|EEZ24891.1| UpdY [Bacteroides sp. 2_1_16]
Length = 179
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY ++ YS E E + R R+ +P R RK+
Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQV-------E 111
V + A ++ +K T I ++ E P+T E+ + + + E
Sbjct: 57 HNLVFVYATRSEV--DEMKSTVGASLPIRYIMDRETRQPITIPEV-QMRSFIAVAGNYDE 113
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V S V + G+RV V+ G F G + ++ V V I G
Sbjct: 114 QVVYLDPSVVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR---RVVVSIQG 160
>gi|60683145|ref|YP_213289.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|18462480|gb|AAL72272.1|AF366394_2 UpdY [Bacteroides fragilis 638R]
gi|60494579|emb|CAH09380.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|301164665|emb|CBW24224.1| putative transcriptional regulator [Bacteroides fragilis 638R]
Length = 179
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY ++ YS E E + R R+ +P R RK+
Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQV-------E 111
V + A ++ +K T I ++ E P+T E+ + + + E
Sbjct: 57 HNLVFVYATRSEV--DEMKSTVGASLPIRYIMDRETRQPITIPEV-QMRSFIAVAGNYDE 113
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V S V + G+RV V+ G F G + ++ V V I G
Sbjct: 114 QVVYLDPSVVSMKRGDRVRVTGGIFEGVEGEFVRIKGDR---RVVVSIQG 160
>gi|212691398|ref|ZP_03299526.1| hypothetical protein BACDOR_00890 [Bacteroides dorei DSM 17855]
gi|212666008|gb|EEB26580.1| hypothetical protein BACDOR_00890 [Bacteroides dorei DSM 17855]
Length = 383
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 49 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 108
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 109 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 166
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+R+ +++G F V + R V V
Sbjct: 167 VYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 208
>gi|223984605|ref|ZP_03634732.1| hypothetical protein HOLDEFILI_02028 [Holdemania filiformis DSM
12042]
gi|223963452|gb|EEF67837.1| hypothetical protein HOLDEFILI_02028 [Holdemania filiformis DSM
12042]
Length = 170
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 14/173 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY V+V + E+ +E + E +P ++ ++ ER FP
Sbjct: 1 MRWYFVEVEKHHEEDVLEL---------MKSSPFEAFLPKKQRYFKKQVLVTWVERLLFP 51
Query: 63 GYVLI-----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
G ++I +A T + + + ++ E + +N +
Sbjct: 52 GTIMITSDFPQAEFTKQFNEWLSQHSDISQWIHLEEKEYFSLQEDERLFLNSLMNEQHVI 111
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
S F +++ V GP +K +D + V I G++ + L
Sbjct: 112 PISTGFLNEKQLIVESGPLQGLESRIKKIDRHQRTAQVRFQICGQMMLLNLGL 164
>gi|169350050|ref|ZP_02866988.1| hypothetical protein CLOSPI_00790 [Clostridium spiroforme DSM 1552]
gi|169293263|gb|EDS75396.1| hypothetical protein CLOSPI_00790 [Clostridium spiroforme DSM 1552]
Length = 171
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 15/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ K G ++ + + IP K K + +P Y
Sbjct: 7 WYVIHA------KVDR--GSKIVKFFNSQKGVDAFIPKIEKWHNVKSVKDYVIKDLYPDY 58
Query: 65 VLIKAVMTDKVYH-----TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +K+ M ++ ++ + L + + D+E + +M ++
Sbjct: 59 VFVKSDMDNEAFNKKFKEFFESIEGFGELLEYEGVYA-LKDTE-QDLMEKLFNGGHIIKR 116
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
S+ V +++ V GP + +V ++ ++ F + V L
Sbjct: 117 SIGNIVDKKLIVDTGPLLGLDDLVVKINRHHRVATLQTEFFDKKIMVPLE 166
>gi|296242675|ref|YP_003650162.1| 50S ribosomal protein L24A [Thermosphaera aggregans DSM 11486]
gi|296095259|gb|ADG91210.1| LSU ribosomal protein L24A [Thermosphaera aggregans DSM 11486]
Length = 162
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 47/156 (30%), Gaps = 34/156 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+ V+ E I R G D ++ I IP
Sbjct: 14 FAVRTTMGRELDVALVIARRAEELIAKGEDPGISSIVIP-----------------PNVR 56
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV + +Y + V P V+ E+E ++ P V
Sbjct: 57 GYVFFEVEKLASLYRLASEVKYV-----KASRPVKVSPEELEKLI--------MPKPVVE 103
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
VG+ V + GPF V +D K+ + V +
Sbjct: 104 SISVGDVVEIIRGPFRGMKAQVTGIDRNKNMLTVNI 139
>gi|265751851|ref|ZP_06087644.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263236643|gb|EEZ22113.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 365
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 31 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 91 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 148
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V G+R+ +++G F V + R V V
Sbjct: 149 VYVPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190
>gi|237726307|ref|ZP_04556788.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434833|gb|EEO44910.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 365
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 31 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 91 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 148
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+R+ +++G F V + R V V
Sbjct: 149 VYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190
>gi|224535786|ref|ZP_03676325.1| hypothetical protein BACCELL_00650 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522509|gb|EEF91614.1| hypothetical protein BACCELL_00650 [Bacteroides cellulosilyticus
DSM 14838]
Length = 206
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 12/163 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + E +S+ S LD + +P+ V+S K R+ SE
Sbjct: 35 KHWFAARTRDKQEFAVRKSLDKLKSEEKLD---LDYYLPTRIVISQLKYRRKRSEVPVIR 91
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ I A T + I + V F + V D ++E M ++
Sbjct: 92 NLIFICA--TKQTACDISNVYNVQLFYMKDLFTHSMLVVPDKQMEDFMFVMDLNPDGVNF 149
Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
F +G++V V G F+ G V E ++ +V + I G
Sbjct: 150 DNEPFAIGDKVKVVKGDFSGIEG---EVATEANKTYVVIRIKG 189
>gi|262384300|ref|ZP_06077435.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294003|gb|EEY81936.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 179
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGEN 94
E IP +G+K + + A+ + +V +K ++ + +GE
Sbjct: 21 ECFIPMRYETREIRGKKKRELTPVVQNLMFVHAIPSVIQEVKSRVKYLQYIVN-VRSGEK 79
Query: 95 PSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
V + ++ + ++ V G RV ++ G F G+ V +
Sbjct: 80 II-VPEDQMRRFIAVTGTYDEQLLWFKPEEVNLAKGTRVRITGGVFEGEEGVFVKVRGAR 138
Query: 151 SRVHVEVVIFG 161
R V V I G
Sbjct: 139 ER-RVVVEIQG 148
>gi|237712159|ref|ZP_04542640.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229453480|gb|EEO59201.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 351
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 17 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 76
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 77 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 134
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+R+ +++G F V + R V V
Sbjct: 135 VYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 176
>gi|255011343|ref|ZP_05283469.1| putative transcriptional regulator Updx-like protein [Bacteroides
fragilis 3_1_12]
gi|313149155|ref|ZP_07811348.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137922|gb|EFR55282.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 179
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 27/170 (15%)
Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY ++ YS E E + R ++ +P R RK+
Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVKN---------FLPMRYEYVFRGERKIRKLVPVV 56
Query: 62 PGYVLIKAVMTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQV-------E 111
V + A ++ +K T I ++ E P+T E+ + + + E
Sbjct: 57 HNLVFVYATRSEV--DEMKSTVGASLPIRYIMDRETRQPITIPEV-QMRSFIAVAGNYDE 113
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V S+V + G+RV V+ G F G + ++ V V I G
Sbjct: 114 QVVYLDPSTVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR---RVVVSIQG 160
>gi|254881672|ref|ZP_05254382.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254834465|gb|EET14774.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 365
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 31 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 91 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 148
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+R+ +++G F V + R V V
Sbjct: 149 VYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190
>gi|150006413|ref|YP_001301157.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|149934837|gb|ABR41535.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
Length = 365
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 31 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 91 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 148
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+R+ +++G F V + R V V
Sbjct: 149 VYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190
>gi|294777067|ref|ZP_06742525.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294449125|gb|EFG17667.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 365
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY++ + + R PS + V G+ VN++R
Sbjct: 31 RWYVLSLPDCHRGGVRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPLLFN 90
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSP-VTDSEIEHIMNQVEAAVQRPV 118
YV ++A D V+ ++ P V+ FL P ++D+ +E++ +
Sbjct: 91 YVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTLP 148
Query: 119 SSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+R+ +++G F V + R V V
Sbjct: 149 VYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190
>gi|15897281|ref|NP_341886.1| transcription antitermination protein NusG [Sulfolobus solfataricus
P2]
gi|13813488|gb|AAK40676.1| Transcription termination antitermination factor (nusG) [Sulfolobus
solfataricus P2]
Length = 157
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 34/171 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++V E + R+ + + + I +P GYV
Sbjct: 15 YAIKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP-----------------PNLKGYV 56
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V I G + EI I+++ +
Sbjct: 57 VLEAEGLHIVKPLIAGIRNARGLAQGL-----LPRDEILKIVSR-------KTVGPTVKP 104
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVE 174
G+ V V GPF V V+E K V + + F V + +Q++
Sbjct: 105 GDVVEVISGPFRGTQAQVIRVEEAKGEVVLNILESAF--PLQVTVPLDQIK 153
>gi|255573929|ref|XP_002527883.1| hypothetical protein RCOM_0085990 [Ricinus communis]
gi|223532734|gb|EEF34514.1| hypothetical protein RCOM_0085990 [Ricinus communis]
Length = 127
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
R +S G V V G FA F G +K ++ + + V +FG+ T +EL ++
Sbjct: 65 RKKTSKLPTAGSTVRVVSGTFAEFVGTLKKLNRKTGKATVGFTLFGKETLIELDRREI 122
>gi|218529585|ref|YP_002420401.1| hypothetical protein Mchl_1609 [Methylobacterium chloromethanicum
CM4]
gi|218521888|gb|ACK82473.1| hypothetical protein Mchl_1609 [Methylobacterium chloromethanicum
CM4]
Length = 238
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 64/195 (32%), Gaps = 27/195 (13%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGG---RLSRSGLDHLVTEITIPSE--RVVSVRKGRKV-- 54
+WY+ + E A S+ R R G +P E ++R +V
Sbjct: 44 ALKWYVCTTAPSRELSAAASVRQATLRGRREG--ETPFAAYVPCEFFWHRAIRSNLRVPR 101
Query: 55 -NSERRFFPGYVLIKA--VMTDKVYHTIK-------DTPKVIGFLG-TGENPSPVTDSEI 103
+R Y+L+ + D+ ++ + + G LG G P + +
Sbjct: 102 REIQRPILRHYILVGVLGGLCDETLAALRDRDREGRNVHGLAGILGAPGIGPLAMNGEGL 161
Query: 104 EHIMNQVEA---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ Q E +S + GE V G F+ F G E V V + +
Sbjct: 162 RWLRAQGEDEIAGATNRSASGTIQPGEDVRAGSGVFSGFLGKFI-GTAEGGTVGV-IALD 219
Query: 161 GRVTP--VELAYNQV 173
R T V L V
Sbjct: 220 MRSTSCEVRLPIEDV 234
>gi|70607204|ref|YP_256074.1| transcription antitermination protein NusG [Sulfolobus
acidocaldarius DSM 639]
gi|140606|sp|P27341|NUSG_SULAC RecName: Full=Putative transcription antitermination protein nusG
gi|99272|pir||S16484 hypothetical protein 3 - Sulfolobus solfataricus
gi|48885|emb|CAA41431.1| unnamed protein product [Sulfolobus solfataricus]
gi|453445|emb|CAA54645.1| unnamed protein product [Sulfolobus acidocaldarius]
gi|68567852|gb|AAY80781.1| NusG [Sulfolobus acidocaldarius DSM 639]
gi|1095513|prf||2109236H ORF
Length = 152
Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y+++V E + R+ + ++ + + +P GYV
Sbjct: 10 YVLRVTGGQEINVALILEERIKTNNINE-IFSVVVP-----------------PNIKGYV 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V V G + ++ V + V+ +
Sbjct: 52 ILEATGPHVVKLISSGIRHVKGVAHGL-----IQKEDVTKF-------VSKSVALPAVKE 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G+ V V GPF V V+ K+ V + ++ V + QV+ +
Sbjct: 100 GDLVEVISGPFRGMQAQVVRVESTKNEVVLNILESSYPVQVTVPLEQVKPV 150
>gi|220923747|ref|YP_002499049.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219948354|gb|ACL58746.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 212
Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V++ SN E+K GL+ +P+ + R+GR R P
Sbjct: 38 RRWYVVRIDSNRERKI---------SEGLEAAGFATCVPASSTLVERRGRIREVRHRAAP 88
Query: 63 GYVLIKAVMTDK 74
GY+ +
Sbjct: 89 GYLFVGVDPGTD 100
>gi|145348039|ref|XP_001418465.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578694|gb|ABO96758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 262
Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 81/232 (34%), Gaps = 65/232 (28%)
Query: 5 WYIVQVYSNCEKKAVESIGG---RLSRSGLDHLVTEI--------TIPSERVV---SVRK 50
WY+++V E +A +I G +V + + E V +
Sbjct: 28 WYMLEVPETRENQAKAAILALNGTKLTRGQGEVVAWVPRVPADGFYVAEEDAVGKSELEL 87
Query: 51 GRKVNSE---RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN----------PSP 97
+ V E PGYVL++ +T ++ D V GF G + +P
Sbjct: 88 CQMVEEEDMIEMLQPGYVLVRCALTQELMDAFDDLRSVRGFATGGSSRFGKKKYEKLNTP 147
Query: 98 VT-DSEIEHIMNQ------------VEAAVQRPVSSVFFEVG------------------ 126
+T D +I ++ + E A ++ + E G
Sbjct: 148 LTMDDQIPRMIERCLPVVKTEADIEAEKAREQAKEVMRAERGDEADEADAGDMRPVASRE 207
Query: 127 ------ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+RV V GPF F G + +++ V + IFGR T V LA ++
Sbjct: 208 EASGSVDRVEVHTGPFKGFKGHIVARNDD-GSVEATLAIFGRDTNVSLAADE 258
>gi|298483361|ref|ZP_07001539.1| transcriptional regulator [Bacteroides sp. D22]
gi|298270490|gb|EFI12073.1| transcriptional regulator [Bacteroides sp. D22]
Length = 140
Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
R+ + P V + +++ T + P+ + D ++ ++
Sbjct: 7 RRKMVDTVLLPMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLD 66
Query: 112 AAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ + ++ GE+V V GP + G + V KS++ V + + G
Sbjct: 67 YSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTVGG-KSKIAVRLNMLG 116
>gi|317478955|ref|ZP_07938101.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|316904864|gb|EFV26672.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 178
Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + G IP + + ++KG+KV +
Sbjct: 10 WYAMRATYRREPDAMHLLKK--ENLG-------CFIPMQYKICIKKGKKVRALVPVVHNL 60
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
+ + A +D +V + + +G+ V DS+++ +
Sbjct: 61 LFVHARPSDVQRVKSQVTYLQYITD-TRSGQKII-VPDSQMQRFIAVSGTYDDHLLYFQP 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F G+ V + R V + I G
Sbjct: 119 DELNLSKGTKVRITGGEFEGQEGVFLKVKGARDR-RVVIEIQG 160
>gi|291515005|emb|CBK64215.1| Transcription antiterminator [Alistipes shahii WAL 8301]
Length = 374
Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 23/171 (13%)
Query: 4 RWYIV--------QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
RWY++ Y +A+ R +R+G V E PS V + G V
Sbjct: 29 RWYVLALPTSRQGH-YQGNPARALRMELERRTRNG--EPVFEYFAPSYVEVRKQHGELVR 85
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVE 111
+ YV I A ++Y + P+ FL + P E + V
Sbjct: 86 TNHPLLYNYVFIHAS-EAEIYRMKRFLPQ-YNFLPRVREKDDAYYPYLSDEAMENLKWVA 143
Query: 112 AAVQRPVSSVF-----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
A+ + G+R+ +++G F V + R V V
Sbjct: 144 ASYSDVLPVYTPGPERLMKGDRIRITEGQFKGVEASVI-IQPGGGRKEVMV 193
>gi|302829843|ref|XP_002946488.1| hypothetical protein VOLCADRAFT_86836 [Volvox carteri f.
nagariensis]
gi|300268234|gb|EFJ52415.1| hypothetical protein VOLCADRAFT_86836 [Volvox carteri f.
nagariensis]
Length = 1143
Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 42/191 (21%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSG--LDH------------LVTEITIPSERV 45
M + WY + V S E+K E + +L+ S + +V + + + V
Sbjct: 298 MGRKMWYAIGVSSGMERKWAEQLHRKLATSDSTMVDPETGDMVPASSLIVPWVPVRRDWV 357
Query: 46 VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-------------LGTG 92
++ + G + E G+V + A + ++V ++ + GF +G
Sbjct: 358 MAKKTGNVIQREVVHKEGWVYVNAPLDEQV---VRMVEECYGFQQWRGEQDYFLDDVGAV 414
Query: 93 ENPSPVTDSEIEHIM--------NQVEAAVQRPVSSVFF-EVGERVCVSDGPFASFNGIV 143
+ +P+++ + I ++++ A ++ ++ F E G V G
Sbjct: 415 KLIAPLSEEAVAEIRSWEATPVADEMDEAKKQELARSMFGEAGGDVLGRSERLEEREG-A 473
Query: 144 KNVDEEKSRVH 154
+D E RV
Sbjct: 474 TELD-ENGRVV 483
>gi|15679672|ref|NP_276789.1| transcription antitermination protein NusG [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622808|gb|AAB86150.1| transcription termination factor NusG [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 169
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++ EK + ++ SG++ + I +P GY+
Sbjct: 19 YALKTSVGQEKNVARMLARKVRDSGIE--INAILVPE-----------------SLRGYI 59
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
L+++ + + P + G + E + + E++ + +
Sbjct: 60 LVESSSKIDMRNPAIRVPHLRGVVESKTEGEAEIDFEEVKRFLKPEPIIS-------SIK 112
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V + GPF V +DE + V +E++ PV + +Q+ I
Sbjct: 113 KGSIVELISGPFKGERAKVIRIDESREEVVLELIEAAVPIPVTVKGDQIRII 164
>gi|307322274|ref|ZP_07601640.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306892091|gb|EFN22911.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 205
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 22/118 (18%)
Query: 4 RWYIVQVYSNC-----------EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR 52
RWY ++V E + +ESI R R +I +PS +R R
Sbjct: 5 RWYAIRVAPGYQRMAAVDERLPENRPMESIIERNRRKD----GFDIFMPSF-YTELRHHR 59
Query: 53 KVNSERRFFP---GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHI 106
++ FP GY + + + ++ V+ FL G P D IE +
Sbjct: 60 TKQILQKRFPFLVGYASVN--LPRLNFEELRRVDGVVCFLRGANYGPLEFPDGTIEAL 115
>gi|41615322|ref|NP_963820.1| transcription antitermination protein NusG [Nanoarchaeum equitans
Kin4-M]
gi|40069046|gb|AAR39381.1| NEQ540 [Nanoarchaeum equitans Kin4-M]
Length = 175
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 31/151 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+IV+ E+ + I + + G + GY+
Sbjct: 18 WIVKTAGGKEEIVADLIEAKAKKLGANVY-------------------SIVIAPGIKGYI 58
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++A D V + D V L P P+ +IE + + V+ V V
Sbjct: 59 FVEADKYDTVNELVHDIKHVRKVL-----PKPIEVKDIEKFIK-----AEPLVTKVN--V 106
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
G+ V V GP G V +E V +E
Sbjct: 107 GDIVEVIAGPLKGSRGKVVAFNENTGEVTIE 137
>gi|218281061|ref|ZP_03487628.1| hypothetical protein EUBIFOR_00187 [Eubacterium biforme DSM 3989]
gi|218217683|gb|EEC91221.1| hypothetical protein EUBIFOR_00187 [Eubacterium biforme DSM 3989]
Length = 166
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 15/162 (9%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ + E++ + + + + P K +R F GY
Sbjct: 6 WYVLLTIRSKEEEVCKYLNE-------NDGIY-AFSPKMEFYHRVS--KQIQQRSLFGGY 55
Query: 65 VLIKAVMTDKVYHTI-KDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
V + + ++ I K P F+ E S +TD EI I+N + + S
Sbjct: 56 VFVVSKLSQVEVDAIFKKFPLQSVFIHELKYEEEVSALTDEEI-RILNMLLDDEKVLRMS 114
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
V ++ V+ GP + + + D+ + + +
Sbjct: 115 YGELVNNKIHVTQGPLKNMDDYIVKYDKHNRLATLNLSFLNQ 156
>gi|237710980|ref|ZP_04541461.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237727277|ref|ZP_04557758.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265750569|ref|ZP_06086632.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229434133|gb|EEO44210.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454824|gb|EEO60545.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263237465|gb|EEZ22915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 181
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
W+ ++V+ N E + + + IP E V ++ G K N +
Sbjct: 9 KHWFALKVFYNKVFAIEELLLKKK---------IKCYIPCETVKVLKQDGTKKNVRKPVI 59
Query: 62 PGYVLIKAV--MTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQVEAAVQ- 115
+ + + ++ + T KV + + P + + E+ M + +
Sbjct: 60 NSLLFFHSETYIAKEIQKIL--TDKVILYTRQIDFKKIPLAIPEREMNIFMLVTSSGEKG 117
Query: 116 ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ F G+ V V DG F G + + + R+ + V
Sbjct: 118 LEYFDTDNPKFYQGDHVKVIDGTFKGAEGYICRIKKNH-RLIITV 161
>gi|284174530|ref|ZP_06388499.1| transcription antitermination protein NusG [Sulfolobus solfataricus
98/2]
gi|3914185|sp|P96036|NUSG_SULSO RecName: Full=Putative transcription antitermination protein nusG
gi|1814426|gb|AAB99523.1| transcription termination-antitermination factor [Sulfolobus
solfataricus]
gi|261601951|gb|ACX91554.1| NusG antitermination factor [Sulfolobus solfataricus 98/2]
Length = 152
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 34/171 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++V E + R+ + + + I +P GYV
Sbjct: 10 YAIKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP-----------------PNLKGYV 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V I G + EI I+++ +
Sbjct: 52 VLEAEGLHIVKPLIAGIRNARGLAQGL-----LPRDEILKIVSR-------KTVGPTVKP 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVE 174
G+ V V GPF V V+E K V + + F V + +Q++
Sbjct: 100 GDVVEVISGPFRGTQAQVIRVEEAKGEVVLNILESAF--PLQVTVPLDQIK 148
>gi|126465988|ref|YP_001041097.1| 50S ribosomal protein L24A [Staphylothermus marinus F1]
gi|126014811|gb|ABN70189.1| LSU ribosomal protein L24A [Staphylothermus marinus F1]
Length = 159
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 32/155 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHL---VTEITIPSERVVSVRKGRKVNSERRFFP 62
Y ++ E I R+ + V + +P
Sbjct: 10 YAIRTTMGREIDVALVIESRIMDLVKQNRDPGVKAVFVP-----------------PGVR 52
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++ +Y I + V P V+ E+ ++ +PV +
Sbjct: 53 GYVFLETSRLASIYRLISELKYV-----KSGQPIKVSLDEVGRLVKP------KPVIEM- 100
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G+ V + GPF V ++D K+ V + +
Sbjct: 101 IKEGDIVEIVRGPFRGMKAQVISIDRNKNMVVLSI 135
>gi|55377551|ref|YP_135401.1| transcription antitermination protein NusG [Haloarcula marismortui
ATCC 43049]
gi|55230276|gb|AAV45695.1| transcription antitermination protein NusG [Haloarcula marismortui
ATCC 43049]
Length = 145
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 36/170 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+ ++ E+ + I R + + P YV
Sbjct: 4 YAVKTTASQERTVADMIISRE-----EDEIHAALAP-----------------DSLTSYV 41
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FE 124
+++A + + + P G + + +E+EH ++ P V
Sbjct: 42 MVEADDHNVFDRILDEIPHANGVVQGES-----SMAEVEHFLS--------PKPDVEGIA 88
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 89 EGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|53712096|ref|YP_098088.1| putative transcriptional regulator UpxY-like protein [Bacteroides
fragilis YCH46]
gi|60680287|ref|YP_210431.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|253563867|ref|ZP_04841324.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265765431|ref|ZP_06093706.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|52214961|dbj|BAD47554.1| putative transcriptional regulator UpxY homolog [Bacteroides
fragilis YCH46]
gi|60491721|emb|CAH06477.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|251947643|gb|EES87925.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263254815|gb|EEZ26249.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301161815|emb|CBW21356.1| putative transcriptional regulator [Bacteroides fragilis 638R]
Length = 178
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 24/166 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E A+ + G +P + +S++KG+KV
Sbjct: 10 WFAMRATYRRETDAMRLLAK--ENLG-------CFVPMQYKISIKKGKKVRVLVPIIHNL 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-----GENPSPVTDSEIEHIMNQVEAAVQR--- 116
+ I A ++ +K ++ +L + D+E++ +
Sbjct: 61 IFIHACPSE-----VKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLY 115
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F G+ V + R V + I G
Sbjct: 116 FQPDELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 160
>gi|227828023|ref|YP_002829803.1| transcription antitermination protein NusG [Sulfolobus islandicus
M.14.25]
gi|229585292|ref|YP_002843794.1| transcription antitermination protein NusG [Sulfolobus islandicus
M.16.27]
gi|238620252|ref|YP_002915078.1| transcription antitermination protein NusG [Sulfolobus islandicus
M.16.4]
gi|227459819|gb|ACP38505.1| NusG antitermination factor [Sulfolobus islandicus M.14.25]
gi|228020342|gb|ACP55749.1| NusG antitermination factor [Sulfolobus islandicus M.16.27]
gi|238381322|gb|ACR42410.1| NusG antitermination factor [Sulfolobus islandicus M.16.4]
gi|323475114|gb|ADX85720.1| NusG antitermination factor [Sulfolobus islandicus REY15A]
gi|323477845|gb|ADX83083.1| NusG antitermination factor [Sulfolobus islandicus HVE10/4]
Length = 152
Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 34/171 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+V E + R+ + + + I +P GYV
Sbjct: 10 YAVKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP-----------------PNLKGYV 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V I G + EI I V + +
Sbjct: 52 VLEAEGLHIVKPLIAGIRNARGLAQGL-----LPRDEILKI-------VSKKTIGPTVKP 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVE 174
G+ V V GPF V V+E K V + + F V + +Q++
Sbjct: 100 GDVVEVISGPFRGTQAQVVRVEEAKGEVVLNILESAF--PLQVTVPLDQIK 148
>gi|254168964|ref|ZP_04875803.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
gi|197622070|gb|EDY34646.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
Length = 277
Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 30/151 (19%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
V+ E K IG + G + + P GYV
Sbjct: 133 AVKTTIGQEVKVARDIGMKAKIHGWKE-IFSVLAPY-----------------NLKGYVF 174
Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
++ DKV I+ G + + EI+H + + VG
Sbjct: 175 VETSRPDKVLSLIRGIKDAKGVVRGE-----MHLEEIKHYLTPTPTIHR-------ISVG 222
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ V + +GPF + V +DE K + VE+
Sbjct: 223 DIVELVEGPFKGEHAKVIQIDEAKDEITVEL 253
>gi|237723749|ref|ZP_04554230.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229437764|gb|EEO47841.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 185
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 21/168 (12%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+++ Y N EKKA E++ G+ GL++ + P V V G K P
Sbjct: 15 RWFVMSAYKN-EKKAEEALKGK---DGLEYFI-----PKHYAVRVYHGMKSKRLVPVIPN 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQRPV- 118
V + A + K K + F+ TG+ V D +++ + + V
Sbjct: 66 LVFVHA--SRKQITDFKKNHNFLQFVMWEKSTGQEYIVVPDEQMDSFIKIASQYEETTVY 123
Query: 119 ---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV-IFG 161
+ G RVC+ G G+ V ++ RV V + I G
Sbjct: 124 YKPEEIDVRKGTRVCIHGGKLDGVKGVFMRVKGKRNRRVVVMLEGIMG 171
>gi|224540035|ref|ZP_03680574.1| hypothetical protein BACCELL_04948 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518351|gb|EEF87456.1| hypothetical protein BACCELL_04948 [Bacteroides cellulosilyticus
DSM 14838]
Length = 115
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ WY++ E+K + L+ +G P + + G+ FF
Sbjct: 14 SRSWYVLYTAPRLERK----LMQHLTVAGYKTY-----CPMQTIYVNWNGKTKEIIVPFF 64
Query: 62 PGYVLIKAVMTD 73
G V ++ + D
Sbjct: 65 SGCVFVEGDLKD 76
>gi|167763526|ref|ZP_02435653.1| hypothetical protein BACSTE_01901 [Bacteroides stercoris ATCC
43183]
gi|167698820|gb|EDS15399.1| hypothetical protein BACSTE_01901 [Bacteroides stercoris ATCC
43183]
Length = 113
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ RW ++ + E+K + RL +G P + V KG+
Sbjct: 7 MS-RWCVLYTAAKSERK----LVQRLHAAGYMA-----FCPMQIVFKKWKGQTKEVFAPL 56
Query: 61 FPGYVLIK 68
FPG V ++
Sbjct: 57 FPGCVFVE 64
>gi|254166694|ref|ZP_04873548.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
gi|289596539|ref|YP_003483235.1| NusG antitermination factor [Aciduliprofundum boonei T469]
gi|197624304|gb|EDY36865.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
gi|289534326|gb|ADD08673.1| NusG antitermination factor [Aciduliprofundum boonei T469]
Length = 277
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 30/151 (19%)
Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
V+ E K IG + G + + P GYV
Sbjct: 133 AVKTTIGQEVKVARDIGMKAKIHGWKE-IFSVLAPY-----------------NLKGYVF 174
Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
++ DKV I+ G + + EI+H + + VG
Sbjct: 175 VETSRPDKVLSLIRGIKDAKGVVRGE-----MHLEEIKHYLTPTPTIHR-------ISVG 222
Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ V + +GPF + V +DE K + VE+
Sbjct: 223 DIVELVEGPFKGEHAKVIQIDEAKDEITVEL 253
>gi|160888139|ref|ZP_02069142.1| hypothetical protein BACUNI_00547 [Bacteroides uniformis ATCC 8492]
gi|160890547|ref|ZP_02071550.1| hypothetical protein BACUNI_02989 [Bacteroides uniformis ATCC 8492]
gi|156860279|gb|EDO53710.1| hypothetical protein BACUNI_02989 [Bacteroides uniformis ATCC 8492]
gi|156862274|gb|EDO55705.1| hypothetical protein BACUNI_00547 [Bacteroides uniformis ATCC 8492]
Length = 178
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + G IP + + ++KG+KV +
Sbjct: 10 WYAMRATYRREPDAMHLLKK--ENLG-------CFIPMQYKICIKKGKKVRALVPVVHNL 60
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
+ + A +D +V + + +G+ V D +++ +
Sbjct: 61 LFVHARPSDVQRVKSQVTYLQYITD-TRSGQKII-VPDGQMQRFIAVSGTYDDHLLYFQP 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F G+ V + R V + I G
Sbjct: 119 DELNLSKGTKVRITGGEFEGQEGVFLKVKGARDR-RVVIEIQG 160
>gi|255007624|ref|ZP_05279750.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
gi|313145317|ref|ZP_07807510.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134084|gb|EFR51444.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 178
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 24/166 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E A+ + G +P + +S++KG+KV
Sbjct: 10 WFAMRATYRRETDAMRLLAK--ENLG-------CFVPMQYKISIKKGKKVRVLVPVIHNL 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGT-----GENPSPVTDSEIEHIMNQVEAAVQR--- 116
+ I A ++ +K ++ +L + D+E++ +
Sbjct: 61 IFIHACPSE-----VKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLY 115
Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F G+ V + R V + I G
Sbjct: 116 FQPDELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 160
>gi|14520220|ref|NP_125694.1| transcription antitermination protein NusG [Pyrococcus abyssi GE5]
gi|5457435|emb|CAB48926.1| nusG transcription antitermination protein [Pyrococcus abyssi GE5]
Length = 152
Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 37/160 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M + + V+V E+ I ++ L + I PS+
Sbjct: 1 MGGKIFAVRVTQGQEENTARLIYSKVRTYNLP--IYAILAPSK----------------- 41
Query: 61 FPGYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
GY+ I+A + D+ I+ V+ P + SEIEH + +
Sbjct: 42 VKGYIFIEAPEKSVVDEAIRGIRHARGVL--------PREIPFSEIEHFL-------EEK 86
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ E G+ V + GPF V VDE K + VE+
Sbjct: 87 PAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVVEL 126
>gi|322371074|ref|ZP_08045626.1| NusG antitermination factor [Haladaptatus paucihalophilus DX253]
gi|320549064|gb|EFW90726.1| NusG antitermination factor [Haladaptatus paucihalophilus DX253]
Length = 145
Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 34/169 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+ ++ E+ + I R + + P YV
Sbjct: 4 YAVKTTASQERTVADMIINREEPE-----IHAVLAP-----------------DSLTSYV 41
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A + +++ P + N S E+EH ++
Sbjct: 42 MVEADDHRVINRVLEEIPHARSMVPGESNIS-----EVEHFLSPTPDVE-------GIAE 89
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|227830760|ref|YP_002832540.1| transcription antitermination protein NusG [Sulfolobus islandicus
L.S.2.15]
gi|229579655|ref|YP_002838054.1| transcription antitermination protein NusG [Sulfolobus islandicus
Y.G.57.14]
gi|229581679|ref|YP_002840078.1| transcription antitermination protein NusG [Sulfolobus islandicus
Y.N.15.51]
gi|284998274|ref|YP_003420042.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5]
gi|227457208|gb|ACP35895.1| ribosomal protein L24 [Sulfolobus islandicus L.S.2.15]
gi|228010370|gb|ACP46132.1| NusG antitermination factor [Sulfolobus islandicus Y.G.57.14]
gi|228012395|gb|ACP48156.1| NusG antitermination factor [Sulfolobus islandicus Y.N.15.51]
gi|284446170|gb|ADB87672.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5]
Length = 152
Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 30/169 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+V E + R+ + + + I +P GYV
Sbjct: 10 YAVKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP-----------------PNLKGYV 51
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A V I G + E+ I V + +
Sbjct: 52 VLEAEGLHIVKPLIAGIRNARGLAQGL-----LPRDEVLKI-------VSKKTIGPTVKP 99
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V V GPF V V+E K V + ++ V + +Q++
Sbjct: 100 GDVVEVISGPFRGTQAQVVRVEEAKGEVVLNILESAFPLQVTVPLDQIK 148
>gi|323948703|gb|EGB44607.1| transcription termination proteinusG [Escherichia coli H252]
Length = 159
Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE-ITI-PSERVVSVRKGRKVNSERRFFP 62
WY++ C ++ I R + I I P + +VRK KV FP
Sbjct: 14 WYLLY----CNNNDLDRIAYRCKTMNVVAFCPRYIKITPRKDCNAVRKEEKV-----LFP 64
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
Y+ + + I P IGF+ G V + + I
Sbjct: 65 NYLFLHFDVNVTHTSAITSIPGAIGFVSFGSTICTVPEKVVIAIK 109
>gi|212694747|ref|ZP_03302875.1| hypothetical protein BACDOR_04279 [Bacteroides dorei DSM 17855]
gi|212662726|gb|EEB23300.1| hypothetical protein BACDOR_04279 [Bacteroides dorei DSM 17855]
Length = 198
Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFF 61
W+ ++V+ N E + + + IP E V ++ G K N +
Sbjct: 26 KHWFALKVFYNKVFAIEELLLKKK---------IKCYIPCETVKVLKQDGTKKNVRKPVI 76
Query: 62 PGYVLIKAV--MTDKVYHTIKDTPKV---IGFLGTGENPSPVTDSEIEHIMNQVEAAVQ- 115
+ + + ++ + T KV + + P + + E+ M + +
Sbjct: 77 NSLLFFHSETYIAKEIQKIL--TDKVILYTRQIDFKKIPLAIPEREMNIFMLVTSSGEKG 134
Query: 116 ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ F G+ V V DG F G + + + R+ + V
Sbjct: 135 LEYFDTDNPKFYQGDHVKVIDGTFKGAEGYICRIKKNH-RLIITV 178
>gi|14589965|ref|NP_142025.1| transcription antitermination protein NusG [Pyrococcus horikoshii
OT3]
gi|3256387|dbj|BAA29070.1| 155aa long hypothetical transcription termination-antitermination
factor [Pyrococcus horikoshii OT3]
Length = 155
Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 37/160 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M + + V+V E+ I ++ L + I PS+
Sbjct: 4 MGGKIFAVRVTQGQEENTARLIYSKVKTYNLP--IYAILAPSK----------------- 44
Query: 61 FPGYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
GY+ I+A + D+ I+ V+ P + SEIEH + +
Sbjct: 45 VKGYIFIEAPEKSVVDEAIRGIRHARGVL--------PGEIPFSEIEHFL-------EEK 89
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ E G+ V + GPF V VDE K + VE+
Sbjct: 90 PAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVVEL 129
>gi|257388977|ref|YP_003178750.1| NusG antitermination factor [Halomicrobium mukohataei DSM 12286]
gi|257171284|gb|ACV49043.1| NusG antitermination factor [Halomicrobium mukohataei DSM 12286]
Length = 145
Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 36/170 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V+ ++ E+ + I R + + P YV
Sbjct: 4 YAVKTTASQERTVADMIISRE-----EESIHAALAP-----------------DSLTSYV 41
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FE 124
+++A + + P G + + SE+EH ++ P V
Sbjct: 42 MVEADDASVFERILDEIPHANGVVPGES-----SMSEVEHFLS--------PKPDVEGIA 88
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 89 EGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|255513719|gb|EET89984.1| NusG antitermination factor [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 150
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++V+V S E +I G D + I + GY+
Sbjct: 3 FVVKVTSGQEN-IAANILQSKLSKG-DAPIYSIIVIE-----------------GLRGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A + I + G + P P+ +++E ++ ++
Sbjct: 44 IVEAQDELACRNFITKERSIKGII-----PKPMDPADVEKLIA-------TKSTAQDISR 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ V + GPF + V VDE KS + VE+
Sbjct: 92 NDIVEFTSGPFKGYKAKVLKVDELKSDITVEL 123
>gi|223985895|ref|ZP_03635932.1| hypothetical protein HOLDEFILI_03238 [Holdemania filiformis DSM
12042]
gi|223962136|gb|EEF66611.1| hypothetical protein HOLDEFILI_03238 [Holdemania filiformis DSM
12042]
Length = 171
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY ++ E++ E++ + P + + + + R
Sbjct: 1 MS--WYFIETERFQEEQVKETLLN---------SQFDAFAPKKEMYFKKGDLTTLTLRFL 49
Query: 61 FPGYVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
FPG VLI + + ++ P G + + E E + Q+
Sbjct: 50 FPGTVLIHDPASPPQFAKKLNAWLD-RNQPGSEGIHREADAYFSLASDEKET-LEQLLNE 107
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+ S + + V GP ++ + + + + + G+ P+ L +
Sbjct: 108 KKILQFSTGIIRNKELHVLKGPLQGHEKEIQKIKRHQRLATLPIKLCGQTIPLILGLEVI 167
Query: 174 EK 175
EK
Sbjct: 168 EK 169
>gi|238898528|ref|YP_002924209.1| putative NusG-type transcription antiterminator [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466287|gb|ACQ68061.1| putative NusG-type transcription antiterminator [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 154
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 1 MTPRWYIVQVYSNCEK--KAVESIGGRLSRSGLDHLVTEITIPSERVVSVR--KGRKVNS 56
M +WY+ S C KA +++ + L PS + R + K
Sbjct: 1 MEKKWYLTCHKSGCSNLYKAQQALIQ-IEVHSLS--------PSIQTWRQRLDRKNKRAV 51
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
F GY+ I+ + + P+ ++ ++ IM
Sbjct: 52 IEPLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMR 103
>gi|207110632|ref|ZP_03244794.1| transcription antitermination protein NusG [Helicobacter pylori
HPKX_438_CA4C1]
Length = 30
Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGL 31
WY +Q YS E+ ++I + +
Sbjct: 3 WYAIQTYSGSEQSVKKAIENLANDHNI 29
>gi|224539260|ref|ZP_03679799.1| hypothetical protein BACCELL_04162 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519109|gb|EEF88214.1| hypothetical protein BACCELL_04162 [Bacteroides cellulosilyticus
DSM 14838]
Length = 190
Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 21/163 (12%)
Query: 5 WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
W+ V+V YS ++ L + ++ + P + ++ G++V
Sbjct: 19 WFAVRVSYSR-----ELTLKSILDKENIESFI-----PMCYGMVMKGGKRVRRLVPAIHN 68
Query: 64 YVLIKAVM--TDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQ---- 115
V + + D + ++ T I F+ E P + D ++ + + +
Sbjct: 69 LVFVHSTRKRIDALKDELEGT-MPIRFIMNREHCRPVVIPDVQMRSFILVAGSHDEPILY 127
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ + G++V ++DG F G + ++ RV V +
Sbjct: 128 MEAAELNLVKGQKVRITDGVFKGVIGEFVRIRHDR-RVVVNIE 169
>gi|170290957|ref|YP_001737773.1| NusG antitermination factor [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175037|gb|ACB08090.1| NusG antitermination factor [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 159
Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 31/146 (21%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+V S E + + R+S +G + + I +P F Y+ +
Sbjct: 11 VRVISGKEINIMRLLVSRVSSTG-AKVRSIIFVPK------------------FKNYLFV 51
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A +V I K+ + SPV EIE I++ A ++ E G+
Sbjct: 52 EAEREYEVRKLIAGLSKLR-----LASSSPVPPQEIEDILSSETAGME-------IEPGD 99
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRV 153
V + G F + +V E KS++
Sbjct: 100 IVKIIKGNFKGYRAVVIATPEGKSKM 125
>gi|161527894|ref|YP_001581720.1| NusG antitermination factor [Nitrosopumilus maritimus SCM1]
gi|160339195|gb|ABX12282.1| NusG antitermination factor [Nitrosopumilus maritimus SCM1]
Length = 152
Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 31/150 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ EK + + + + + ++ + + GYV
Sbjct: 10 FAIRTTGGQEKVVMRLLEAKANANQIN--IQSVF-----------------WVNDLKGYV 50
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+I+A+ Y ++ + G L + E + I E + + + V
Sbjct: 51 VIEAINPSDAYMAVEGVRHIRGQLRG--------ELEFKDI----EGYLVKKSTVSTLAV 98
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V ++ GPF + +D +K V
Sbjct: 99 DNVVEITGGPFKGMKATITRIDSDKEEATV 128
>gi|148230569|ref|NP_001084514.1| G patch domain and KOW motifs-containing protein [Xenopus laevis]
gi|82185478|sp|Q6NU07|GPKOW_XENLA RecName: Full=G patch domain and KOW motifs-containing protein
gi|46250332|gb|AAH68795.1| MGC81356 protein [Xenopus laevis]
Length = 487
Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
LG G + S + E + ++ + S G V + G + G V+ +D
Sbjct: 193 LGLGADRSALKHLEPQKPRKPLKPGEEPEEESKGLGTGSAVQIQSGAYKDMYGKVEGIDP 252
Query: 149 EKSRVHVEVVIFGRVTPVEL 168
+ SR + + I G+V V L
Sbjct: 253 DNSRAMITLAIGGKVVTVSL 272
>gi|212540742|ref|XP_002150526.1| transcription initiation protein spt5 [Penicillium marneffei ATCC
18224]
gi|210067825|gb|EEA21917.1| transcription initiation protein spt5 [Penicillium marneffei ATCC
18224]
Length = 1021
Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 30/151 (19%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS---ERRFFPGY 64
V+ E+ V +I R+ + R G K+ S + GY
Sbjct: 213 VRCKPGKERDVVLNIQKRIEQRPPG---------------TRHGLKIISAFERGKTMTGY 257
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V I+A +V + V V E+ ++ R S
Sbjct: 258 VYIEARRQAEVMEALDGLLDVY----PKTKMVLVPVKEMPDLL--------RVKKSEELN 305
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G+ V + G + ++ V+ V V
Sbjct: 306 PGDWVRIKRGKYQGDLAQIEEVETNGLEVTV 336
>gi|57641354|ref|YP_183832.1| transcription antitermination protein NusG [Thermococcus
kodakarensis KOD1]
gi|57159678|dbj|BAD85608.1| transcription antitermination protein [Thermococcus kodakarensis
KOD1]
Length = 152
Score = 43.2 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GY+ I+A V I+ L P + SEIEH + + +
Sbjct: 43 VKGYIFIEAPNKSAVEEAIRGIRHAKRVL-----PGEIPFSEIEHFL-------EEKPAV 90
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
FE G+ V + GPF V VDE K + VE+
Sbjct: 91 SGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 127
>gi|289580819|ref|YP_003479285.1| NusG antitermination factor [Natrialba magadii ATCC 43099]
gi|289530372|gb|ADD04723.1| NusG antitermination factor [Natrialba magadii ATCC 43099]
Length = 145
Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV+++A + ++D P + + S E+EH ++ P V
Sbjct: 39 SYVMVEAEGNAVLNRVLEDIPHARSIVPGESDIS-----EVEHFLS--------PKPDVE 85
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 86 GIAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|238755352|ref|ZP_04616694.1| Transcription antitermination factor (TraB) [Yersinia ruckeri ATCC
29473]
gi|238706387|gb|EEP98762.1| Transcription antitermination factor (TraB) [Yersinia ruckeri ATCC
29473]
Length = 169
Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 44 RVVSVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT 99
V ++R+ K+N R+ FPGY +KA + + I+ GF+ G +P+
Sbjct: 42 TVRTIRRTDKINCIRKRISPLFPGYFFLKANLATQTVDNIRRHSAFCGFVMNGPQIAPLR 101
Query: 100 DSEIEHIMNQ 109
+E +M
Sbjct: 102 PLIVEGLMKC 111
>gi|291515004|emb|CBK64214.1| hypothetical protein AL1_18470 [Alistipes shahii WAL 8301]
Length = 370
Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 45/182 (24%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY++ VY + E + L R + + E P GR V + R
Sbjct: 33 RWYVM-VYPTSSRAMTEELDRELTRRRRDNEPLFEYFAPVLVEARKMNGRLVTTRRSLLY 91
Query: 63 GYVLIKA---------------------VMTDKVYHTIKDTPKVIG----FLGTGENPSP 97
Y+ + A + + YH T K + + P P
Sbjct: 92 NYLFVHASECEIYRIKQRLPQYNLLPRVKDSKESYHYPYLTDKAMRDLQWIARSYAEPIP 151
Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ ++ ++ G+R+ +++G FA V + + + V
Sbjct: 152 ICTADPAWLVK-----------------GDRIRITEGRFAGIEAKVVTNTPTRHK-EILV 193
Query: 158 VI 159
I
Sbjct: 194 SI 195
>gi|257076134|ref|ZP_05570495.1| transcription antitermination protein NusG [Ferroplasma acidarmanus
fer1]
Length = 298
Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 43 ERVVSVRKGRKVNSERRFFP----GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV 98
E +++ K + P GY I+ + D+V K GF+ +
Sbjct: 170 EERMAMNKNARNEVMAVMSPYEIKGYFFIETMHADRVDVLSKSIRGFRGFVSGD-----I 224
Query: 99 TDSEIEHIMNQVEAAVQRPVSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
SEIE + P +V E+G V + +GPF + +D K V V
Sbjct: 225 DISEIEKYL--------TPKPAVTGLEMGSLVEIVEGPFKGERAKITAIDAAKEEVTV 274
>gi|85059190|ref|YP_454892.1| hypothetical protein SG1212 [Sodalis glossinidius str. 'morsitans']
gi|84779710|dbj|BAE74487.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
Length = 147
Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WY++ + ++ + L P R + +R
Sbjct: 9 MS--WYLL--------RFKATLFNMVFNH-LAASGVYYFCPMIETQYRRPDSVASFRKRL 57
Query: 61 ---FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
FPGY+ + + + G + G+ PSP+ D+ I+ +M +
Sbjct: 58 SPVFPGYLFVNLDFDHCHPQKLSAHRHIYGLINFGQGPSPIDDAVIDLLMAK 109
>gi|325110731|ref|YP_004271799.1| NGN domain-containing protein [Planctomyces brasiliensis DSM 5305]
gi|324970999|gb|ADY61777.1| NGN domain-containing protein [Planctomyces brasiliensis DSM 5305]
Length = 190
Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 22/174 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK----GRKVNSERRF 60
WY S EK + + R P +V+ + GR S
Sbjct: 33 WYAFYTTSRQEKAFMRKLIDRQVSF---------YCP---IVANKNRSPKGRVRTSHLPL 80
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
F YV + ++ +T + L ++ + +++ I ++ +
Sbjct: 81 FSNYVFVFGDFESRIQAF--ETNCISRCLEVEDSAA--LHEQLKAIETLIQCG-EPVTIE 135
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G V + G G V +R+ V V + + VEL +VE
Sbjct: 136 SRLMPGVPVRIKSGSLKGLTGTV-FQRRGTNRLLVGVQLLQQGASVELNDWEVE 188
>gi|224538119|ref|ZP_03678658.1| hypothetical protein BACCELL_03010 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520247|gb|EEF89352.1| hypothetical protein BACCELL_03010 [Bacteroides cellulosilyticus
DSM 14838]
Length = 177
Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 9/145 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + E +S+ + GLD + +P+ VVS K R+ +E
Sbjct: 6 KYWFAARTRDKQEFAVRKSLDKFKAEEGLD---LDYYLPTRTVVSQLKYRRKRTEVPVIR 62
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ I A T + + + V + + V + ++E + ++
Sbjct: 63 NLIFIYA--TKQTACDLSNVYGVRLYYMKDLFTHSMLVVPNKQMEDFIFIMDLNPDGVSF 120
Query: 120 -SVFFEVGERVCVSDGPFASFNGIV 143
S F +G +V V G F+ G +
Sbjct: 121 DSEPFAIGNKVKVIKGDFSGIEGEI 145
>gi|167754737|ref|ZP_02426864.1| hypothetical protein CLORAM_00241 [Clostridium ramosum DSM 1402]
gi|167705569|gb|EDS20148.1| hypothetical protein CLORAM_00241 [Clostridium ramosum DSM 1402]
Length = 170
Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE---RRFF 61
WY+ + + KK V ++ ++ ++ + + SER GR +E + +
Sbjct: 10 WYVARFKTGRTKKLVSTLNKQV---NMNAFIPK----SERCF----GRGETAEFIVKEIY 58
Query: 62 PGYVLIKAVMTDKVYHT-----IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
P YV IK+ + + + K ++ L + P+T E + ++ ++
Sbjct: 59 PDYVFIKSDLDQEAFDEQFKEYFKTINGLVDLLEYKDTY-PLTSEE-QSLLVKLLDNTDT 116
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ V R +DGP ++K VD+ + ++ I V + Y
Sbjct: 117 IKHTKGVIVDRRFVPTDGPLVGLEDMIKKVDKYRRFATLDTEILTGKLLVAIDY 170
>gi|189466308|ref|ZP_03015093.1| hypothetical protein BACINT_02682 [Bacteroides intestinalis DSM
17393]
gi|189434572|gb|EDV03557.1| hypothetical protein BACINT_02682 [Bacteroides intestinalis DSM
17393]
Length = 190
Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 23/164 (14%)
Query: 5 WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
W+ V+V YS ++ LD E IP + ++ G++V
Sbjct: 19 WFAVRVSYS----------RELALKAILDEENIESFIPMRYGIVMKGGKRVRKLVPAIHN 68
Query: 64 YVLIKAVM--TDKVYHTIK-DTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQR-- 116
V I + D + ++ P I F+ E P + D+++ + + +
Sbjct: 69 LVFIHSTRKRIDALKDELEGKMP--IRFIMNREYCRPVVIPDAQMRSFILVAGSYDEAVL 126
Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ + G++V ++DG F G + ++ RV V +
Sbjct: 127 YIESTELNLVKGQKVRITDGVFKGVIGEFVRIRHDR-RVVVNIE 169
>gi|325959969|ref|YP_004291435.1| NusG antitermination factor [Methanobacterium sp. AL-21]
gi|325331401|gb|ADZ10463.1| NusG antitermination factor [Methanobacterium sp. AL-21]
Length = 147
Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++ EK IG + SG++ V I +P GY+
Sbjct: 3 YAIRTLVGQEKNVARIIGRNVKNSGIE--VHSILVPE-----------------SLRGYI 43
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L+++ + + P + G + + E++ +N +
Sbjct: 44 LVESSTKIDMQNPAFKVPHMKGAIEGE-----IPYEEVKSFLNP-------EPILASVQK 91
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V + GPF V +DE K V +E++ PV + +Q+ I
Sbjct: 92 GSIVELISGPFKGEKAKVVRIDESKEDVVLELIEAAVPIPVTVKGDQIRLI 142
>gi|238899397|ref|YP_002925080.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229467159|gb|ACQ68932.1| transcriptional activator affecting biosynthesis, assembly and
export of lipopolysaccharide core, F pilin, and
hemolysin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 149
Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 1 MTPRWYIVQVYSNCEK--KAVESIGGRLSRSGLDHLVTEITIPSERVVSVR--KGRKVNS 56
M +WY+ S C KA +++ + L PS + R + K
Sbjct: 1 MEKKWYLTCHKSGCSNLYKAQQALIQ-IEVHSLS--------PSIQTWRQRLDRKNKRAV 51
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
F GY+ I+ + + P+ ++ ++ IM
Sbjct: 52 IEPLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMR 103
>gi|58332632|ref|NP_001011390.1| G patch domain and KOW motifs [Xenopus (Silurana) tropicalis]
gi|56788865|gb|AAH88579.1| G patch domain and KOW motifs [Xenopus (Silurana) tropicalis]
Length = 306
Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
LG G + S + D E + ++ + S G V + G G V+ VD
Sbjct: 195 LGLGADRSALKDLEPQKPRKPLKPGEKLEEESRGLGKGSSVQIQSGAHKDLYGKVEGVDP 254
Query: 149 EKSRVHVEVVIFGRVTPVEL 168
+ SR +++ I G+V V L
Sbjct: 255 DNSRAMIKLAIGGKVVTVSL 274
>gi|329766365|ref|ZP_08257911.1| NusG antitermination factor [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137134|gb|EGG41424.1| NusG antitermination factor [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 152
Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 31/150 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ EK + + + + + L+ + + + GYV
Sbjct: 10 FAIRTTGGQEKIVMRLLEAKANTNKLN--IQSVLL-----------------VDNLKGYV 50
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+I+A+ Y ++ + G L + E + I E + + + V
Sbjct: 51 VIEAINPSDAYMAVEGVRHIRGQLRG--------ELEFKDI----EGYLVKKSTVSQLGV 98
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ + ++ GPF + +D +K V
Sbjct: 99 DDVIEITGGPFKGMKATITRIDVDKEEATV 128
>gi|189466345|ref|ZP_03015130.1| hypothetical protein BACINT_02719 [Bacteroides intestinalis DSM
17393]
gi|189434609|gb|EDV03594.1| hypothetical protein BACINT_02719 [Bacteroides intestinalis DSM
17393]
Length = 115
Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WYIV E+K + L+ +G + P + + G+ FF G
Sbjct: 17 WYIVYTAPRLERK----LMQHLNVAG-----YKTFCPMQTIYVNWDGKMKEIIVPFFSGC 67
Query: 65 VLIKAVMTD 73
V ++ + D
Sbjct: 68 VFVEGDLKD 76
>gi|242398372|ref|YP_002993796.1| NusG transcription antitermination protein [Thermococcus sibiricus
MM 739]
gi|242264765|gb|ACS89447.1| NusG transcription antitermination protein [Thermococcus sibiricus
MM 739]
Length = 155
Score = 42.4 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+V E+ + I + L + I PS+ GY+
Sbjct: 10 FAVRVTVGQEENTAKLIYSKAKTYSLP--IMAILSPSK-----------------VRGYI 50
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++A V I+ G L P P++ EIEH + + + FE
Sbjct: 51 FVEATEKAAVDEVIRGIRHAKGTL-----PGPISFIEIEHFL-------EEKPAVSGFEP 98
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G+ V + GPF V VDE K + VE+
Sbjct: 99 GDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 130
>gi|116754720|ref|YP_843838.1| transcription antitermination protein NusG [Methanosaeta
thermophila PT]
gi|116666171|gb|ABK15198.1| LSU ribosomal protein L24A [Methanosaeta thermophila PT]
Length = 153
Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y+V+ +N E+ + + LD + I +P GYV
Sbjct: 7 YVVKTTANQERAVANLVAQVARKEKLD--IRAILVP-----------------DVLKGYV 47
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + V I+ P + + +EIEH + + V
Sbjct: 48 LVEASAPEIVEQAIQGVPHARSVIKGAS-----SFAEIEHFLTP-------KPAVVGISE 95
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G V + GPF VK VD K + VE+
Sbjct: 96 GAIVELISGPFKGEMARVKRVDIAKEEITVEL 127
>gi|330998566|ref|ZP_08322385.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
gi|329568113|gb|EGG49934.1| transcription termination/antitermination factor NusG
[Paraprevotella xylaniphila YIT 11841]
Length = 184
Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 23/165 (13%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W++++ S + L + + P VV++ +G++V F
Sbjct: 15 WFVLR-------DLKRSNARHPAYRQLAEMGLRVFTPMHEVVTLVRGQRVRKNVPFLHDL 67
Query: 65 VLIKAVMTDKVYHTIKDTPKV-----IGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQR-- 116
+ ++ + Y ++ + ++ G +P V E+E + VE+ +
Sbjct: 68 LFVR-----ERYSALRSVVERDPTLQFRYVRGGYCSPMTVRTVEMERFIRAVESTFRPRY 122
Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158
P +G +V + GP + G + ++ + R+ +++
Sbjct: 123 YLPGEISPSMIGRQVLIVGGPLNGYEGHLLSIRGSRVKRLFIDLS 167
>gi|332158453|ref|YP_004423732.1| transcription antitermination protein NusG [Pyrococcus sp. NA2]
gi|331033916|gb|AEC51728.1| transcription antitermination protein NusG [Pyrococcus sp. NA2]
Length = 152
Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 37/160 (23%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M + + V+V E+ I ++ L V I PS+
Sbjct: 1 MGGKIFAVRVTQGQEENTARLIYSKVRTYNLP--VYAILAPSK----------------- 41
Query: 61 FPGYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
GY+ ++A + D+ I+ V+ P V SEIEH + +
Sbjct: 42 VKGYIFVEAPEKSVVDEAIRGIRHARGVL--------PREVPFSEIEHFL-------EEK 86
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ E G+ V + GPF V VDE K + VE+
Sbjct: 87 PAVSGLEPGDIVELISGPFKGEKAKVVRVDEAKDEIVVEL 126
>gi|254500965|ref|ZP_05113116.1| Transcription termination factor nusG domain protein [Labrenzia
alexandrii DFL-11]
gi|222437036|gb|EEE43715.1| Transcription termination factor nusG domain protein [Labrenzia
alexandrii DFL-11]
Length = 215
Score = 42.4 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 28/172 (16%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE------- 57
W ++ CE +A + + G + +P E+ + R GR +
Sbjct: 29 WVVIHTNPKCETRARDGLLGAGLLA---------FLPMEQ-IERRHGRGRKVKPAQTYTV 78
Query: 58 -RRFFPGYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAA 113
R FP Y+ + + I+ V G L + + V S++ I+
Sbjct: 79 IRPMFPRYLFAGMDVKKGQSVDQIRACDGVKGVLSFDKTGAVARVAVSDLIKILELSHGT 138
Query: 114 VQ-------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ + + G V + G + + V D K RV E+
Sbjct: 139 FEGRPVADGQMADVARLKEGAVVKLVKGSWCGQDLTVTGYDAAKERVIGELT 190
>gi|323498594|ref|ZP_08103586.1| transcriptional activator RfaH [Vibrio sinaloensis DSM 21326]
gi|323316292|gb|EGA69311.1| transcriptional activator RfaH [Vibrio sinaloensis DSM 21326]
Length = 73
Score = 42.4 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ +E A Q E G+ V V++G FA I + D E+ R + V + + V
Sbjct: 4 LKGIEQAQQCLKQGCLPEKGDTVKVANGQFAGIEAIYQQADGER-RSILLVNMLSKQVEV 62
Query: 167 ELAYNQVE 174
+ +E
Sbjct: 63 TVDNQDLE 70
>gi|330997477|ref|ZP_08321327.1| hypothetical protein HMPREF9442_02426 [Paraprevotella xylaniphila
YIT 11841]
gi|329570593|gb|EGG52314.1| hypothetical protein HMPREF9442_02426 [Paraprevotella xylaniphila
YIT 11841]
Length = 183
Score = 42.4 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 16/138 (11%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK-----AVMTDKVYHTIKDTPKV 85
L E+ P +SV+ GR+ E F + + + Y+T++
Sbjct: 33 FKDLGMEVFTPMVWKLSVKHGRRCREEVPFIQDLLFVNGTRLAVDPIVEKYNTVQ----- 87
Query: 86 IGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQ----RPVSSVFFEVGERVCVSDGPFASFN 140
+L G P V +S+++ ++ V+++ P +G +V + GP +
Sbjct: 88 YRYLRGGYKIPMTVRESDMQRFIHAVQSSENPRYYTPEEISSDMIGRKVRIVGGPLDGYE 147
Query: 141 GIVKNVDEEK-SRVHVEV 157
G ++ + R+ VE+
Sbjct: 148 GNLQKIQGAHVKRLFVEL 165
>gi|16082397|ref|NP_394879.1| transcription antitermination protein NusG [Thermoplasma
acidophilum DSM 1728]
gi|10640767|emb|CAC12545.1| probable transcription termination-antitermination factor related
protein [Thermoplasma acidophilum]
Length = 299
Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ ++ + D++ + +D G + + EI H + P +V
Sbjct: 197 GYIFVETMHPDRISYLARDIRGYKGMVSGK-----IDLEEIAHYL--------TPKPAVS 243
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
E+G V + +GPF + ++D K V V
Sbjct: 244 GLELGSLVELVEGPFKGEKAKIISIDSVKEEVTV 277
>gi|242800831|ref|XP_002483662.1| transcription initiation protein spt5 [Talaromyces stipitatus ATCC
10500]
gi|218717007|gb|EED16428.1| transcription initiation protein spt5 [Talaromyces stipitatus ATCC
10500]
Length = 1024
Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 30/151 (19%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS---ERRFFPGY 64
V+ E+ V +I R+ + R G K+ S + GY
Sbjct: 214 VRCKPGKERDVVLNIQKRIEQRPPG---------------TRHGLKIISAFERGKTMTGY 258
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V I++ +V + V V E+ ++ R S
Sbjct: 259 VYIESRRQAEVMEALDGLLDVY----PKTKMVLVPVKEMPDLL--------RVKKSAELN 306
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
G+ V + G + ++ V+ V V
Sbjct: 307 PGDWVRIKRGKYQGDLAQIEEVETNGLEVTV 337
>gi|160889471|ref|ZP_02070474.1| hypothetical protein BACUNI_01895 [Bacteroides uniformis ATCC 8492]
gi|156860988|gb|EDO54419.1| hypothetical protein BACUNI_01895 [Bacteroides uniformis ATCC 8492]
Length = 176
Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E +A+ + + G IP + +S+R+GRKV +
Sbjct: 8 WFAMRATYRRELEAMHLLEK--ANLG-------CFIPMQYKISIRRGRKVRALVPVIRNL 58
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
V + A ++ + I + +G+ + D +++ +
Sbjct: 59 VFVHARPSEVQRFKSQITYLQYITD-TRSGQKIV-IPDHDMQRFIAVAGTYNDHLLYFQP 116
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F G+ V + R V + I G
Sbjct: 117 EELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158
>gi|255014229|ref|ZP_05286355.1| putative transcriptional regulator UpxY-like protein [Bacteroides
sp. 2_1_7]
Length = 186
Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 26/171 (15%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++++ Y N EK A + + + E IP V G K P
Sbjct: 15 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVKTYHGMKSTRLVPVIPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAVQR 116
V + A + I + K FL TG V D +++ + +
Sbjct: 67 LVFVHA-----SHSQITEFKKRYNFLQFAMWKKSTGMEYITVPDDQMDSFIQIASLYEKD 121
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV-IFG 161
+ G RVC+ G G+ V ++ RV V + I G
Sbjct: 122 TAYYKPDEIDVRKGTRVCIHGGKLDGVKGVFMRVKGKRNRRVVVMLEGIMG 172
>gi|317479971|ref|ZP_07939086.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|316903916|gb|EFV25755.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 176
Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E +A+ + + G IP + +S+R+GRKV +
Sbjct: 8 WFAMRATYRRELEAMHLLEK--ANLG-------CFIPMQYKISIRRGRKVRALVPVIRNL 58
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
V + A ++ + I + +G+ + D +++ +
Sbjct: 59 VFVHARPSEVQRFKSQITYLQYITD-TRSGQKII-IPDHDMQRFIAVAGTYNDHLLYFQP 116
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F G+ V + R V + I G
Sbjct: 117 EELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158
>gi|167762938|ref|ZP_02435065.1| hypothetical protein BACSTE_01302 [Bacteroides stercoris ATCC
43183]
gi|167699278|gb|EDS15857.1| hypothetical protein BACSTE_01302 [Bacteroides stercoris ATCC
43183]
Length = 183
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 16/145 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V+ ++ E K + + R +P V ++G+
Sbjct: 16 WYAVRTFNCQELKISDFLKERKKVH---------FVPMTYVEKEKEGKTRKMLVPVVHNL 66
Query: 65 VLIKAVMT-DKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPV--- 118
V ++ + +K+ L ++P + D ++ + + +
Sbjct: 67 VFLQKNESRKATLAMLKECNVPFSVLCDKETKHPCEIPDKQMTEFRILCDPDFKDTLYIT 126
Query: 119 -SSVFFEVGERVCVSDGPFASFNGI 142
+ G+ V + GPFA G
Sbjct: 127 HEEAEAKPGKNVRIIHGPFAGITGK 151
>gi|329955184|ref|ZP_08296141.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|328526183|gb|EGF53202.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 199
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 23/164 (14%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY V+ YS E + + +++ + P +R R+V
Sbjct: 28 WYAVRVTYSR-ELSLKDYLDK----ENIENFI-----PMHYEYIIRNERRVRKLVPAIHN 77
Query: 64 YVLIKAVMTDKVYHTIKDTPKV---IGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV 118
V +++ T IK+ P + + ++ E P + D+++ + + V
Sbjct: 78 LVFVRS--TRACIDEIKNNPALNIPVRYIMNRETRQPVIIPDAQMRSFILVAGTYDEAVV 135
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ G +V ++ G F G + ++ RV V +
Sbjct: 136 YVEPEELKLVKGTKVRITGGVFEGAVGEFVRLRHDR-RVVVNIE 178
>gi|257051976|ref|YP_003129809.1| transcription antitermination protein NusG [Halorhabdus utahensis
DSM 12940]
gi|256690739|gb|ACV11076.1| NusG antitermination factor [Halorhabdus utahensis DSM 12940]
Length = 145
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV+++A + + P G + + E+EH ++
Sbjct: 39 SYVMVEAEDASVFERILDEIPHANGVVQGKS-----SIKEVEHFLSPTPDVE-------G 86
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 87 IAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|73668161|ref|YP_304176.1| transcription antitermination protein NusG [Methanosarcina barkeri
str. Fusaro]
gi|72395323|gb|AAZ69596.1| LSU ribosomal protein L24A [Methanosarcina barkeri str. Fusaro]
Length = 152
Score = 42.0 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++++ +N E+ ++ + LD + I P E GYV
Sbjct: 8 FVIKTTANQERSVATALARVSKKEKLD--IRAILAPDE-----------------LKGYV 48
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + V I+ P + + +EIEH + + +
Sbjct: 49 LVEAPKSGIVELAIQTIPHARALVKGSS-----SIAEIEHFLKP-------KPTVTGIKE 96
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + V+ GPF VK VDE + VE+
Sbjct: 97 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128
>gi|150008836|ref|YP_001303579.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149937260|gb|ABR43957.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 186
Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 26/171 (15%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++++ Y N EK A + + + E IP V G K P
Sbjct: 15 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSTRLVPVIPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAVQR 116
V + A + I + K FL TG V D +++ + +
Sbjct: 67 LVFVHA-----SHSQITEFKKRYNFLQFAMWEKSTGMEYITVPDDQMDSFIQIASLHEKD 121
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV-IFG 161
+ G RVC+ G G+ V ++ RV V + I G
Sbjct: 122 TAYYKPDEIDVRKGTRVCIHGGKLDGVKGVFMRVKGKRNRRVVVMLEGIMG 172
>gi|315229956|ref|YP_004070392.1| NusG-like transcription antitermination protein [Thermococcus
barophilus MP]
gi|315182984|gb|ADT83169.1| NusG-like transcription antitermination protein [Thermococcus
barophilus MP]
Length = 152
Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 53/152 (34%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+V E+ + + L + I PS+ GY+
Sbjct: 7 FAVRVTVGQEETTARLVYSKAKTYNLP--IYAILTPSK-----------------VKGYI 47
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
I+A V I+ G L P V SEIEH + + + FE
Sbjct: 48 FIEAPSKSAVDEAIRGIRHARGTL-----PGEVAFSEIEHFL-------EEKPAVSGFEP 95
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G+ V + GPF V VDE K + VE+
Sbjct: 96 GDIVELIAGPFKGEKAKVIRVDEAKDEIVVEL 127
>gi|325297433|ref|YP_004257350.1| putative transcriptional regulator Updx-like protein [Bacteroides
salanitronis DSM 18170]
gi|324316986|gb|ADY34877.1| putative transcriptional regulator Updx-like protein [Bacteroides
salanitronis DSM 18170]
Length = 203
Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIK-----AVMTDKVYHTIKDTPKVIGFLGT 91
++ P + R G++ E F + + + Y T++ ++
Sbjct: 59 QVFTPMVWKLVTRNGKRYREEVPFMQDLLFVHDTRLAVDPIVEKYDTVQ-----YRYVRG 113
Query: 92 GEN-PSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
G P V ++++E ++ VE+ P +G +V + GP + G ++ +
Sbjct: 114 GYKIPMTVREADMERFIHAVESTENTRYYAPEEISSDMIGRKVRIVGGPLDGYEGNLQKM 173
Query: 147 DEEKSR 152
+++
Sbjct: 174 QGARTK 179
>gi|284165911|ref|YP_003404190.1| NusG antitermination factor [Haloterrigena turkmenica DSM 5511]
gi|284015566|gb|ADB61517.1| NusG antitermination factor [Haloterrigena turkmenica DSM 5511]
Length = 145
Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV++++ + ++D P + + S E+EH ++ P V
Sbjct: 39 SYVMVESEGDAVLNRVLEDIPHARSIVPGKSDIS-----EVEHFLS--------PKPDVE 85
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 86 GIAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|189467016|ref|ZP_03015801.1| hypothetical protein BACINT_03398 [Bacteroides intestinalis DSM
17393]
gi|189435280|gb|EDV04265.1| hypothetical protein BACINT_03398 [Bacteroides intestinalis DSM
17393]
Length = 178
Score = 41.6 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 22/161 (13%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY ++ YS ++ L +++ + P VR K+
Sbjct: 10 WYPLRITYSR-----ELALKNYLDSKQIENFI-----PMRYEYIVRNECKIRKLVPAIHN 59
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG-----TGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V +++ T K IK+ I + + P + D ++ + Q+ V
Sbjct: 60 LVFVRS--TRKQLEEIKEAKGAILPIRYIMDCETQQPITIPDVQMRSFIAVAGNCDQQVV 117
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+++ + G+RV ++ G F G + +++ V V
Sbjct: 118 YLDPTTINLKRGQRVRITGGVFEGVEGEFVRIKDDRRVVVV 158
>gi|167044190|gb|ABZ08872.1| putative KOW motif protein [uncultured marine crenarchaeote
HF4000_APKG5E24]
gi|167044468|gb|ABZ09143.1| putative KOW motif protein [uncultured marine crenarchaeote
HF4000_APKG6J21]
Length = 222
Score = 41.6 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 31/166 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ EK + + R+ ++ + + + S GYV
Sbjct: 81 FAVRTTGGQEKIVMRLLEARIKMEKIN--IQSVLLLS-----------------DLKGYV 121
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A ++ I+ + G L +T EI+ + + + V +
Sbjct: 122 VVEARDVSAMFDAIQGIRHIRGQLRGE-----LTYKEIDKYLIKKSTVSELAVEN----- 171
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
V + GPF + ++ EK V ++ PV + N
Sbjct: 172 --TVEIIGGPFKGMKATITRLELEKEEATVILLDATYELPVTVDAN 215
>gi|150009827|ref|YP_001304570.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149938251|gb|ABR44948.1| putative transcriptional regulator UpxY-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 186
Score = 41.6 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 26/171 (15%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW++++ Y N EK A + + + E IP V G K P
Sbjct: 15 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVKTYHGVKSTRLVPVIPS 66
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAVQR 116
V + A + I + K FL TG V D +++ + +
Sbjct: 67 LVFVHA-----SHSQITEFKKRYNFLQFAMWKKSTGMEYITVPDDQMDSFIQIASLYEKD 121
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV-IFG 161
+ G RVC+ G G+ V ++ RV V + I G
Sbjct: 122 TAYYKPDEIDVRKGTRVCIHGGKLDGVKGVFMRVKGKRNRRVVVMLEGIMG 172
>gi|156937967|ref|YP_001435763.1| transcription antitermination protein NusG [Ignicoccus hospitalis
KIN4/I]
gi|156566951|gb|ABU82356.1| NGN domain protein [Ignicoccus hospitalis KIN4/I]
Length = 147
Score = 41.6 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 31/150 (20%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ S E I R LD V + +P G+V++
Sbjct: 8 VRTVSGREIDVALLIEERARAKNLD--VKSVIVP-----------------PRIKGFVIV 48
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
++ V ++ V G G G+ ++ E+ ++ V EVG+
Sbjct: 49 ESPAHFVVAEAVRGIKYVRG--GPGKK---ISLEEVLKMIKPVPIIE-------TVEVGD 96
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + G F V+ EK+ + + +
Sbjct: 97 IVELVAGVFKGVKARVEAKIPEKNELVLSI 126
>gi|13542274|ref|NP_111962.1| transcription antitermination protein NusG [Thermoplasma volcanium
GSS1]
gi|14325707|dbj|BAB60610.1| transcription termination-antitermination factor [nusG]
[Thermoplasma volcanium GSS1]
Length = 288
Score = 41.6 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 40/159 (25%)
Query: 7 IVQVYSNCEKKAVESIGGRLSR---------SGLDHLVTEITIPSERVVSVRKGRKVNSE 57
++ E + + + R V I P E
Sbjct: 138 ALKTTVGSEVQVATDLNNKAERDRDERSQGGEKQPSEVFAIMAPYE-------------- 183
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
GY+ ++ + D++ + KD G + + EI H + P
Sbjct: 184 ---IKGYIFVETMHPDRISYLAKDIRGYKGMVSGK-----IDLEEIAHYL--------TP 227
Query: 118 VSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+V E+G V + +GPF + ++D K V V
Sbjct: 228 KPAVSGLELGSLVELVEGPFKGEKAKIISIDSVKEEVTV 266
>gi|167043318|gb|ABZ08023.1| putative KOW motif protein [uncultured marine crenarchaeote
HF4000_ANIW141M18]
Length = 228
Score = 41.6 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 31/171 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ EK + + R+ ++ + + + S GYV
Sbjct: 87 FAVRTTGGQEKIVMRLLEARIKMEKIN--IQSVLLLS-----------------DLKGYV 127
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++A ++ I+ + G L +T EI+ + + + V +
Sbjct: 128 VVEARDVSAMFDAIQGIRHIRGQLRGE-----LTYKEIDKYLIKKSTVSELAVEN----- 177
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V + GPF + ++ EK V ++ PV + N ++ +
Sbjct: 178 --TVEIIGGPFKGMKATITRLELEKEEATVILLDATYELPVTVDANYLKLV 226
>gi|20093062|ref|NP_619137.1| transcription antitermination protein NusG [Methanosarcina
acetivorans C2A]
gi|19918386|gb|AAM07617.1| transcription antitermination protein NusG [Methanosarcina
acetivorans C2A]
Length = 156
Score = 41.6 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++++ +N E+ ++ + LD + I P E GYV
Sbjct: 12 FVIKTTANQERSVAMALARIAKKEKLD--IRAILAPDE-----------------LKGYV 52
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + V I+ P + + +EIEH + +
Sbjct: 53 LVEAPKSGIVELAIQTIPHARALVKGSS-----SIAEIEHFLKP-------KPIVTGIKE 100
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + V+ GPF VK VDE + VE+
Sbjct: 101 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 132
>gi|281357169|ref|ZP_06243658.1| hypothetical protein Vvad_PD2261 [Victivallis vadensis ATCC
BAA-548]
gi|281316200|gb|EFB00225.1| hypothetical protein Vvad_PD2261 [Victivallis vadensis ATCC
BAA-548]
Length = 154
Score = 41.6 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 1/125 (0%)
Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
KV +E FPGY+ + + I++ V L E + E+ +
Sbjct: 28 KVITEVPMFPGYLFLCLGRFEAADLKIREKKIVKIDLQFDEGREALLIDELHTLQRCEAL 87
Query: 113 AVQRPV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
A P+ + G++V ++ G A V D+ + V V + G+ L
Sbjct: 88 AKTEPILINPGIRHGDKVLITSGSLAGLVTEVVRRDDAHDAIIVNVTLLGQHIEYRLPAE 147
Query: 172 QVEKI 176
+++K+
Sbjct: 148 KLKKL 152
>gi|257485766|ref|ZP_05639807.1| hypothetical protein PsyrptA_21036 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 170
Score = 41.6 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRF 60
W+++ +S+ + R + E+ P R R + E R
Sbjct: 2 KNWHVLM----HNSAVYQSLMTLIERLDV-----EVYSPVRITSRKRTDRPSSIEKEVRL 52
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ TI GF+ G + DS +E + R +
Sbjct: 53 FPGYLLLRFDPEVTHTTTITALNGAHGFVQFGGRTCVLQDSTVEELKAAALIRSNRSLDC 112
Query: 121 VFF 123
+ F
Sbjct: 113 IEF 115
>gi|91773883|ref|YP_566575.1| transcription antitermination protein NusG [Methanococcoides
burtonii DSM 6242]
gi|91712898|gb|ABE52825.1| LSU ribosomal protein L26e [Methanococcoides burtonii DSM 6242]
Length = 154
Score = 41.2 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 33/153 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++V+ +N E+ + + LD + I P E GYV
Sbjct: 8 FVVKTTANQERSVAAMLAQVAKKENLD--IRSIIAPDE-----------------LKGYV 48
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FE 124
L+++ + V I+ P + T +EIEH + P +V
Sbjct: 49 LLESSDSGAVEQAIQTVPHARTVVKGQS-----TIAEIEHFL--------TPKPTVTGIV 95
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + V+ GPF VK VDE + VE+
Sbjct: 96 EGAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128
>gi|134045214|ref|YP_001096700.1| 50S ribosomal protein L24P [Methanococcus maripaludis C5]
gi|150402579|ref|YP_001329873.1| 50S ribosomal protein L24P [Methanococcus maripaludis C7]
gi|166222070|sp|A4FWB0|RL24_METM5 RecName: Full=50S ribosomal protein L24P
gi|166222071|sp|A6VGZ6|RL24_METM7 RecName: Full=50S ribosomal protein L24P
gi|132662839|gb|ABO34485.1| LSU ribosomal protein L24P [Methanococcus maripaludis C5]
gi|150033609|gb|ABR65722.1| ribosomal protein L24 [Methanococcus maripaludis C7]
Length = 119
Score = 41.2 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + +S + ++++ E + +S+ + G+ V V G F G V VD ++
Sbjct: 20 PLHLRNSVMAAMLSK-ELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKII 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|302130288|ref|ZP_07256278.1| hypothetical protein PsyrptN_02770 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|331012862|gb|EGH92918.1| hypothetical protein PSYTB_25009 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 194
Score = 41.2 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRF 60
W+++ +S+ + R ++ + P R R + E R
Sbjct: 26 KNWHVLM----HNSAVYQSLMTLIERLDVE-----VYSPVRITSRKRTDRPSSIEKEVRL 76
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
FPGY+L++ TI GF+ G + DS +E + R +
Sbjct: 77 FPGYLLLRFDPEVTHTTTITALNGAHGFVQFGGRTCVLQDSTVEELKAAALIRSNRSLDC 136
Query: 121 VFF 123
+ F
Sbjct: 137 IEF 139
>gi|319643638|ref|ZP_07998257.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
gi|317384737|gb|EFV65697.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
Length = 321
Score = 41.2 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 41 PSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPS 96
PS + V G+ VN++R YV ++A D V+ ++ P V+ FL
Sbjct: 24 PSYQEVRRIDGKFVNTQRPLLFNYVFVRASERD-VFQLMQRFP-VLSFLPRVRERKREYF 81
Query: 97 P-VTDSEIEHIMNQVEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKS 151
P ++D+ +E++ + + G+R+ +++G F V +
Sbjct: 82 PYLSDAAMENLQWVARSYSNTLPVYIPQPDGLRKGDRIRITEGRFKGVEATVV-IQPGAG 140
Query: 152 RVHVEV 157
R V V
Sbjct: 141 RKDVMV 146
>gi|256841520|ref|ZP_05547027.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298376269|ref|ZP_06986225.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
gi|256737363|gb|EEU50690.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298267306|gb|EFI08963.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
Length = 178
Score = 41.2 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 33/173 (19%)
Query: 1 MTPRWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
+T W++++ N R + L+ E+ P + RKG+++ E
Sbjct: 5 LTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRIREEV 55
Query: 59 RFFPGYVLIK-----AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEA 112
+ + T++ +L G P V +E+ + V +
Sbjct: 56 PLLHDLLFAHTTCACMDPIVEEISTLQ-----YRYLRGGYRKPMTVGHAEMNRFIRAVHS 110
Query: 113 A-------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
V+ +++ G + + GP + G + ++ + R+ VE+
Sbjct: 111 DDSPRYFLVEELTPAMY---GRMIRIEGGPLDGYEGRLLSIRGARVKRLIVEI 160
>gi|238491498|ref|XP_002376986.1| transcription initiation protein spt5 [Aspergillus flavus NRRL3357]
gi|220697399|gb|EED53740.1| transcription initiation protein spt5 [Aspergillus flavus NRRL3357]
Length = 895
Score = 41.2 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 50/148 (33%), Gaps = 24/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ E++ + +I R+ + P + + + +G GY+ +
Sbjct: 83 VRCKPGKEREVIFAIQKRIEERPMGSR-----NPMKIISAFERGG-------AMSGYIYV 130
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V ++D V V E+ ++ +V+ + + G
Sbjct: 131 EARRQADVMDALQDMSNVY----PRTKMILVPVREMPDLL-RVQKSEE-------LLPGG 178
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + G + + ++ V+ V V
Sbjct: 179 WVRIKRGKYQNDLAQIEEVETNGLAVTV 206
>gi|21227112|ref|NP_633034.1| transcription antitermination protein NusG [Methanosarcina mazei
Go1]
gi|20905441|gb|AAM30706.1| putative transcription antitermination protein nusG [Methanosarcina
mazei Go1]
Length = 156
Score = 41.2 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++++ +N E+ ++ + LD + I P E GYV
Sbjct: 12 FVIKTTANQERSVAMTLARVAKKEKLD--IRAILAPDE-----------------LKGYV 52
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A + V I+ P + + SEIEH + +
Sbjct: 53 LVEAPKSGIVELAIQTIPHARALVKGSS-----SISEIEHFLKP-------KPVVTGIKE 100
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + V+ GPF VK VDE + VE+
Sbjct: 101 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 132
>gi|169773511|ref|XP_001821224.1| transcription elongation factor SPT5 [Aspergillus oryzae RIB40]
gi|110826533|sp|Q2UGU3|SPT5_ASPOR RecName: Full=Transcription elongation factor spt5; AltName:
Full=Chromatin elongation factor spt5
gi|83769085|dbj|BAE59222.1| unnamed protein product [Aspergillus oryzae]
Length = 1026
Score = 41.2 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 50/148 (33%), Gaps = 24/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ E++ + +I R+ + P + + + +G GY+ +
Sbjct: 214 VRCKPGKEREVIFAIQKRIEERPMGSR-----NPMKIISAFERGG-------AMSGYIYV 261
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V ++D V V E+ ++ +V+ + + G
Sbjct: 262 EARRQADVMDALQDMSNVY----PRTKMILVPVREMPDLL-RVQKSEE-------LLPGG 309
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + G + + ++ V+ V V
Sbjct: 310 WVRIKRGKYQNDLAQIEEVETNGLAVTV 337
>gi|45358973|ref|NP_988530.1| 50S ribosomal protein L24P [Methanococcus maripaludis S2]
gi|74579566|sp|Q6LXE2|RL24_METMP RecName: Full=50S ribosomal protein L24P
gi|45047839|emb|CAF30966.1| LSU ribosomal protein L24P [Methanococcus maripaludis S2]
Length = 119
Score = 41.2 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + +S + ++ + E + +S+ + G+ V V G F G V VD ++
Sbjct: 20 PLHLRNSVMSAMLAK-ELKEKYAKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKII 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|316933853|ref|YP_004108835.1| hypothetical protein Rpdx1_2511 [Rhodopseudomonas palustris DX-1]
gi|315601567|gb|ADU44102.1| hypothetical protein Rpdx1_2511 [Rhodopseudomonas palustris DX-1]
Length = 188
Score = 41.2 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 39 TIPSE-RVVSVRKGRKVNSERRFFPGYVLI-KA-VMTDKVYHTIKDTPKVIGFLGTGEN- 94
+P E + V+ +GR+ + GY+L+ +A + Y + T V G L +
Sbjct: 37 YLPMEWKSVAAGRGRRREVQVPLLIGYLLLPEAGGLAHGRYGDVLATRGVRGLLHYAGSQ 96
Query: 95 -PSPVTDSEIEHIMNQVEAAVQRPVSSV------FFEVGERVCVSDGPFASFNGIVKNVD 147
P+ ++D+ +E + + AA + + ++ G+ V P S +
Sbjct: 97 APARLSDATVERLRAEERAADNKRQMRLLAAGRGEWQPGDEVWAEILPGRSLLARISAEK 156
Query: 148 EEKSRVHVEV--VIFGRVTPVELAYNQVEKI 176
+ R+ + + + GR + Q++++
Sbjct: 157 APRGRIAILLGEEVLGRRAFA-VEPKQLQRV 186
>gi|255014262|ref|ZP_05286388.1| putative transcriptional regulator Updx-like protein [Bacteroides
sp. 2_1_7]
Length = 177
Score = 41.2 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 28/170 (16%)
Query: 1 MTPRWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
+T W++++ N R + L+ EI P + RKG+++ E
Sbjct: 5 LTDNWFVLRDLTRPN----------KRPAYRLLEEKGIEIFTPMRWRLVERKGKRIREEV 54
Query: 59 RFFPGYVLIK-----AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEA 112
+ + T++ +L G P V +E+ + V +
Sbjct: 55 PLLHDLLFAHTTCACMDPIVEEISTLQ-----YRYLRGGYRKPMTVGHAEMNRFIRAVHS 109
Query: 113 AVQRP----VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
G + + GP + G + ++ + R+ VE+
Sbjct: 110 DDSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 159
>gi|301309360|ref|ZP_07215302.1| putative transcription termination factor NusG [Bacteroides sp.
20_3]
gi|300832449|gb|EFK63077.1| putative transcription termination factor NusG [Bacteroides sp.
20_3]
Length = 178
Score = 41.2 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
Query: 1 MTPRWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
+T W++++ N R + L+ E+ P + RKG+++ E
Sbjct: 5 LTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRIREEV 55
Query: 59 RFFPGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
+ T D + I T + G P V +E+ + V +
Sbjct: 56 PLLHDLLFAHTTRTCMDPIVEEI-STLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSDDSP 114
Query: 117 PVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
V G + + GP + G + ++ + R+ VE+
Sbjct: 115 RYFLVEELTSAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 160
>gi|262383310|ref|ZP_06076446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294208|gb|EEY82140.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 178
Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 27/170 (15%)
Query: 1 MTPRWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
+T W++++ N R + L+ E+ P + RKG+++ E
Sbjct: 5 LTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRIREEV 55
Query: 59 RFFPGYVLIK-----AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEA 112
+ + T++ +L G P V +E+ + V +
Sbjct: 56 PLLHDLLFAHTTCACMDPIVEEISTLQ-----YRYLRGGYRKPMTVGHAEMNRFIRAVHS 110
Query: 113 AVQRP----VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
G + + GP + G + ++ + R+ VE+
Sbjct: 111 DDSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 160
>gi|237725565|ref|ZP_04556046.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229436252|gb|EEO46329.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 182
Score = 41.2 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ ++ + + + IP V +R GRK
Sbjct: 7 MQWFAMRATYRRGMQVKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + AV + ++ P + G+ V D ++ + + +
Sbjct: 58 DLIFVHAVQS-ELQKVKFKLPYFQYMIDIRNGQKII-VPDDQMRQFIAVAGTYDEHLIFF 115
Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V G +V ++ G F + G+ V + R V + + G
Sbjct: 116 SPDEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159
>gi|159905646|ref|YP_001549308.1| 50S ribosomal protein L24P [Methanococcus maripaludis C6]
gi|159887139|gb|ABX02076.1| ribosomal protein L24 [Methanococcus maripaludis C6]
Length = 119
Score = 41.2 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + +S + ++++ E + +S+ + G+ V V G F G V VD ++
Sbjct: 20 PLHLRNSVMAAMLSK-ELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKII 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|301115069|ref|XP_002999304.1| transcription elongation factor SPT5, putative [Phytophthora
infestans T30-4]
gi|262111398|gb|EEY69450.1| transcription elongation factor SPT5, putative [Phytophthora
infestans T30-4]
Length = 1142
Score = 40.8 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE-----EKSR 152
++D E++ + VGE V V +GPF+ +G VK++ +R
Sbjct: 561 ISDQEVQRKIVSSRTTAALDKKHNHVSVGEMVNVVEGPFSGHSGTVKHIYRTYLFIHNNR 620
Query: 153 VHVEVVIF 160
V +F
Sbjct: 621 VTTNSGMF 628
Score = 34.7 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
+ T+ V ++ + + G + E ++ VEA + V G+
Sbjct: 358 MLTTEDVNPSLDEINRFSSVAGEDG------EHTAEEMLASVEA--DDWKNKVDLTKGDT 409
Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVE---VVIFGRVTPVELAYNQVEKIV 177
V V +G + G+V + + V V I + T ++ Q+ K V
Sbjct: 410 VRVIEGDLINLMGVVLSTNTANDTVRVMPLHEEI--KDTILDFQLKQLMKYV 459
Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 56 SERRFFPGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI---MNQVE 111
+ + + Y+ I +T + VI G+ +++S + + M Q
Sbjct: 605 TVKHIYRTYLFIHNNRVTTNSGMFVTRARGVI-LSGSKARSDMISNSTVPRMDAGMRQQN 663
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
R +G+ V V G + + GIV VDE +V VE+
Sbjct: 664 QRGGRNQRESEL-IGQTVKVKKGRWKGYIGIV--VDESDQKVKVEI 706
>gi|169351143|ref|ZP_02868081.1| hypothetical protein CLOSPI_01922 [Clostridium spiroforme DSM 1552]
gi|169292205|gb|EDS74338.1| hypothetical protein CLOSPI_01922 [Clostridium spiroforme DSM 1552]
Length = 163
Score = 40.8 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 15/170 (8%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY++ V S E + L++ + + E +P R+ K + F GY
Sbjct: 3 WYVLYVLSYK----KEQLIKYLNK--YEDV--EAFVPKYEY--YRRVTKDYEIKPMFNGY 52
Query: 65 VLIKAVMTD-KVYHTIKDTPKVI-GFLGTGENP--SPVTDSEIEHIMNQVEAAVQRPVSS 120
+ +K+ M + + K G L P S + EIE + +++ S
Sbjct: 53 IFVKSTMNQLEFNSLLMKMSKEKDGLLKQLVYPDTSALKKEEIE-MFDRLLDENYVVKMS 111
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
+ +R + +GP F ++ VD+ ++ ++ R L
Sbjct: 112 QAYLQDKRAIIINGPLKYFENDIRKVDKYNKVAYLNLLFMNREIKAGLEI 161
>gi|148642684|ref|YP_001273197.1| transcription antitermination protein NusG [Methanobrevibacter
smithii ATCC 35061]
gi|222445819|ref|ZP_03608334.1| hypothetical protein METSMIALI_01463 [Methanobrevibacter smithii
DSM 2375]
gi|261349636|ref|ZP_05975053.1| ribosomal protein L24 [Methanobrevibacter smithii DSM 2374]
gi|148551701|gb|ABQ86829.1| transcription antiterminator, NusG [Methanobrevibacter smithii ATCC
35061]
gi|222435384|gb|EEE42549.1| hypothetical protein METSMIALI_01463 [Methanobrevibacter smithii
DSM 2375]
gi|288861594|gb|EFC93892.1| ribosomal protein L24 [Methanobrevibacter smithii DSM 2374]
Length = 156
Score = 40.8 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 30/172 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGR-LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
Y ++ + E+ + + +S G+ ++ I +P GY
Sbjct: 9 YALKTSAGQERNVARLLAHKAISVEGIG--ISAILVPE-----------------SLKGY 49
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
+L+++ + + P + G + +T E + + +
Sbjct: 50 ILVESSTKIDLRNPDLKVPHLRGVVEGKHG---ITFEEAKRFLKP-------EPIISSIQ 99
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V + GPF V +DE + V +E++ PV + +Q+ I
Sbjct: 100 KGSVVELISGPFKGERAKVVRIDESREEVVLELIEAAVPIPVTVKADQIRII 151
>gi|329960547|ref|ZP_08298914.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328532611|gb|EGF59401.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 177
Score = 40.8 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 23/164 (14%)
Query: 5 WYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
W+ V+V E + ++ IP R G+++
Sbjct: 7 WFAVRVTYGRELVLKAMLDEEKIES----------FIPMRYEYVSRNGKRMRKLVPAIHN 56
Query: 64 YVLI-----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V I K +++ P P + D ++ + + +
Sbjct: 57 LVFIHCTRKKMDEIKELFGA--KVPIRYIMDRETRQPIVIPDEQMRSFILVSGNYDEAVL 114
Query: 119 SSVFFEV----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
E+ G++V ++DG F G + ++ RV V +
Sbjct: 115 YLEPMELALVKGQKVRITDGIFKGVIGEFVRIRHDR-RVVVSIE 157
>gi|325968428|ref|YP_004244620.1| NusG antitermination factor [Vulcanisaeta moutnovskia 768-28]
gi|323707631|gb|ADY01118.1| NusG antitermination factor [Vulcanisaeta moutnovskia 768-28]
Length = 148
Score = 40.8 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 33/177 (18%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKGRKVNSERR 59
M+ R Y ++ N E + R GLD + ++ I +
Sbjct: 1 MSCRAYALRAVGNQEYNVAFMLKARAEHKGLDKVRISAIVV-----------------LP 43
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
G+V ++ M ++ G + ++ EI + +
Sbjct: 44 TLKGFVFVEGSMPYEIQDLATGIKHYRGMVRG-----VMSIDEIVSSLAKP--------- 89
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V VG+ V + PF + G V ++D ++ +V++E++ P+ + V K+
Sbjct: 90 -VEINVGDVVEIIVEPFKGYRGKVVDIDRQRGQVYLELLDSSSTMPIIVNIKGVRKV 145
>gi|218129971|ref|ZP_03458775.1| hypothetical protein BACEGG_01554 [Bacteroides eggerthii DSM 20697]
gi|317476812|ref|ZP_07936055.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
gi|217987829|gb|EEC54155.1| hypothetical protein BACEGG_01554 [Bacteroides eggerthii DSM 20697]
gi|316906987|gb|EFV28698.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
Length = 172
Score = 40.8 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 29/167 (17%)
Query: 5 WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
W+ ++V YS ++ L +++ + P ++ G++V
Sbjct: 3 WFAIRVSYSR-----ELALKAILDAEKIENFI-----PMRYEYVIKSGKRVRRLLPAIHN 52
Query: 64 YVLIKAV------MTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIM----NQVE 111
V + + + D++ P I F+ E P + D+++ + + E
Sbjct: 53 LVFVHSTRKRIDALKDELES---SMP--IRFIMNREFCRPVVIPDAQMRSFILVAGSHEE 107
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
A + + + G++V ++ G F G + ++ RV V +
Sbjct: 108 AILYVEPAELHLAKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 153
>gi|254171978|ref|ZP_04878654.1| ribosomal protein L24 [Thermococcus sp. AM4]
gi|214033874|gb|EEB74700.1| ribosomal protein L24 [Thermococcus sp. AM4]
Length = 152
Score = 40.8 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 31/150 (20%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+V E+ + I ++ L V I PS+ GY+ +
Sbjct: 9 VRVTVGQEETTAKLIYSKVKTYNLP--VYAILAPSK-----------------VKGYIFV 49
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V IK G L P V EIEH + + + FE G+
Sbjct: 50 EAPSKSAVDEAIKGIRHARGTL-----PGEVRFEEIEHFL-------EEKPAVSGFEPGD 97
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + GPF V VDE K + VE+
Sbjct: 98 IVELISGPFKGEKAKVVRVDESKDEIVVEL 127
>gi|329954481|ref|ZP_08295572.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|328527449|gb|EGF54446.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 200
Score = 40.8 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 23/164 (14%)
Query: 5 WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
W+ ++V YS ++ L +++ + P ++ G++V
Sbjct: 30 WFAIRVSYSR-----ELALKAILDAENIENFI-----PMRYEYIMKSGKRVRKLLPAIHN 79
Query: 64 YVLIKAV--MTDKVYHTIK-DTPKVIGFLGTGE--NPSPVTDSEIEHIM----NQVEAAV 114
V + + D + ++ P I F+ E P + ++++ + N EA +
Sbjct: 80 LVFVYSTRKRIDALKDKLEPSMP--IRFIMNREHCRPVVIPEAQMRSFILVAGNCDEAVL 137
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ + G++V ++ G F G + ++ RV V +
Sbjct: 138 YVEPAELHLVKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 180
>gi|150397106|ref|YP_001327573.1| hypothetical protein Smed_1904 [Sinorhizobium medicae WSM419]
gi|150028621|gb|ABR60738.1| hypothetical protein Smed_1904 [Sinorhizobium medicae WSM419]
Length = 205
Score = 40.8 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--------TEITIPSERVVSVRKG 51
M+ RWY ++ ++ ++ ++ +I +PS ++
Sbjct: 1 MSRSRWYAIRTAPGY-QRMAAVDERLPESRRMESIIERNCRKDGFDIFMPSF-YKELKHH 58
Query: 52 RKVNSERRFFP---GYVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHI 106
R + FP GY + + + ++ + FL G P + IE +
Sbjct: 59 RTNEIIEKRFPFLVGYAFVN--LPRLNFEELRRVDGAVCFLRGANYGPLEFPSATIEAL 115
>gi|270296427|ref|ZP_06202627.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273831|gb|EFA19693.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 177
Score = 40.5 bits (94), Expect = 0.086, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 12/150 (8%)
Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
MT + W+ + E +S+ S L+ + +P+ V+S K R+ SE
Sbjct: 1 MTEQQKYWFAARTRDKQEFTVRKSLDRLKSEEHLE---LDYYLPTRFVISQLKYRRKRSE 57
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAV 114
V + + T + I + V F + V D ++E M ++
Sbjct: 58 VPVIRNLVFVHS--TKQTACDISNIYNVPLFYMKDLATHSMLVVPDKQMEDFMFVMDLNP 115
Query: 115 QRPVSSVFF-EVGERVCVSDGPFASFNGIV 143
VG +V V G + G V
Sbjct: 116 DSVSLDSEILTVGHKVKVIKGELSGIEGEV 145
>gi|212223324|ref|YP_002306560.1| transcription antitermination protein NusG [Thermococcus onnurineus
NA1]
gi|212008281|gb|ACJ15663.1| transcription antitermination protein [Thermococcus onnurineus NA1]
Length = 152
Score = 40.5 bits (94), Expect = 0.086, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 31/150 (20%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+V E+ + I ++ L V I PS+ GY+ +
Sbjct: 9 VRVTVGQEETTAKLIYSKIKTYNLP--VYAILAPSK-----------------VKGYIFV 49
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V IK G L P V EIEH + + + FE G+
Sbjct: 50 EAPSKSAVDEAIKGIRHAKGTL-----PGEVRFEEIEHFL-------EEKPAVSGFEPGD 97
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + GPF V VDE K + VE+
Sbjct: 98 IVELIAGPFKGEKAKVVRVDEAKDEIVVEL 127
>gi|150008463|ref|YP_001303206.1| putative transcriptional regulator Updx-like protein
[Parabacteroides distasonis ATCC 8503]
gi|149936887|gb|ABR43584.1| putative transcriptional regulator Updx-like protein
[Parabacteroides distasonis ATCC 8503]
Length = 178
Score = 40.5 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 19/162 (11%)
Query: 5 WYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W++++ N R + L+ EI P + RKG+++ E
Sbjct: 9 WFVLRDLTRPN---------AKRPAYRLLEEKGIEIFTPMRWRLVERKGKRIREEVPLLH 59
Query: 63 GYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--- 117
+ T D + I T + G P V +E+ + V +
Sbjct: 60 DLLFAHTTRTCMDPIVEEI-STLQYRYLRGGYRKPMTVGHAEMNRFICAVHSDDSPRYFL 118
Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
G + + GP + G + ++ + R+ VE+
Sbjct: 119 VEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGTRVKRLIVEI 160
>gi|300711886|ref|YP_003737700.1| NusG antitermination factor [Halalkalicoccus jeotgali B3]
gi|299125569|gb|ADJ15908.1| NusG antitermination factor [Halalkalicoccus jeotgali B3]
Length = 145
Score = 40.5 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV++++ + + + P + + + E+EH ++ P V
Sbjct: 39 SYVMVESDDHAIIERVLDEIPHARSIVPGQSSIT-----EVEHFLS--------PKPDVE 85
Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 86 GIAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|295885458|gb|ADG57711.1| Spa3 [Serratia proteamaculans]
Length = 160
Score = 40.5 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 4 RWYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+ C K +++ +++ ++ + + + R S R G+ + FP
Sbjct: 3 RWYL-----ACHKAGKDNVFKAQMTLERMNIMAFSPVMRAYRPRSDRPGKLRPVMEQMFP 57
Query: 63 GYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
GY+ I +++H I+ P + + +P+ D+ ++ +M
Sbjct: 58 GYLFIFFD--TEIHHSSKIELCPGISHLVRFAGEIAPIRDAVVDDVMQ 103
>gi|327294527|ref|XP_003231959.1| hypothetical protein TERG_07577 [Trichophyton rubrum CBS 118892]
gi|326465904|gb|EGD91357.1| hypothetical protein TERG_07577 [Trichophyton rubrum CBS 118892]
Length = 356
Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFG---- 161
+ + + V V F G+RVC+ G G + VDEE V VE V +F
Sbjct: 86 LRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKILQVDEESQSVTVEGVNMFDVEFP 145
Query: 162 -------------RVTPVELAYNQVEKIV 177
R PV ++++ V +V
Sbjct: 146 AFALAEDSDKRPYRSYPVPISFDDVRLVV 174
>gi|240102542|ref|YP_002958851.1| transcription antitermination protein NusG [Thermococcus
gammatolerans EJ3]
gi|239910096|gb|ACS32987.1| Ribosomal protein L26E (rpl26E) [Thermococcus gammatolerans EJ3]
Length = 152
Score = 40.1 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 31/150 (20%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+V E+ + I ++ L V I PS+ GY+ +
Sbjct: 9 VRVTVGQEETTAKLIYSKVKTYNLP--VYAILAPSK-----------------VKGYIFV 49
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V IK G L P V EIEH + + + FE G+
Sbjct: 50 EAPSKSAVDEAIKGIRHARGTL-----PGEVKFEEIEHFL-------EEKPAVSGFEPGD 97
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + GPF V VDE K + VE+
Sbjct: 98 IVELISGPFKGEKAKVVRVDESKDEIVVEL 127
>gi|15789631|ref|NP_279455.1| transcription antitermination protein NusG [Halobacterium sp.
NRC-1]
gi|169235344|ref|YP_001688544.1| transcription antitermination protein NusG [Halobacterium salinarum
R1]
gi|10579991|gb|AAG18935.1| transcription termination-antitermination factor [Halobacterium sp.
NRC-1]
gi|167726410|emb|CAP13193.1| transcription antitermination protein homolog [Halobacterium
salinarum R1]
Length = 145
Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 36/170 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ ++ E+ I R + + + P YV
Sbjct: 4 FAVKTTASQEQTVASMIANRE-----EDTIHAVLAP-----------------DALTSYV 41
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FE 124
+++A T + T+ + P + S E+EH ++ P V
Sbjct: 42 MVEAEDTAAIERTMDEIPHARSLVPGESGIS-----EVEHFLS--------PKPDVEGIA 88
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ V + GPF V+ +DE K +V VE+ PV + +Q+
Sbjct: 89 ENDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138
>gi|38201740|ref|NP_938107.1| putative NusG-type transcription antiterminator [Serratia
entomophila]
gi|38176563|gb|AAR13129.1| putative NusG-type transcription antiterminator [Serratia
entomophila]
Length = 160
Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 4 RWYIVQVYSNCEKKAVESI-GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+ C K +++ +++ ++ + + + R S R G+ + FP
Sbjct: 3 RWYL-----ACHKAGKDNVFKAQMTLERMNIMAFSPVMRAYRPRSDRPGQLRPVMEQMFP 57
Query: 63 GYVLIKAVMTDKVYH--TIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
GY+ I +++H I+ P + + +P+ D+ ++ +M
Sbjct: 58 GYLFIFFD--TEIHHSSKIELCPGISHLVRFAGEITPIRDAVVDDVMQ 103
>gi|294643754|ref|ZP_06721552.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|292640843|gb|EFF59063.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
Length = 93
Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
+P+ + D ++ ++ + + ++S GE+V V GP G + NVD
Sbjct: 5 GESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVVKGPLTGLVGELVNVDG- 63
Query: 150 KSRVHVEVVIFG 161
KS++ V + + G
Sbjct: 64 KSKIAVRLNMLG 75
>gi|305663812|ref|YP_003860100.1| NusG antitermination factor [Ignisphaera aggregans DSM 17230]
gi|304378381|gb|ADM28220.1| NusG antitermination factor [Ignisphaera aggregans DSM 17230]
Length = 166
Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ + E I R S L + I GY+
Sbjct: 23 FAIRTTAGQETNVALMIEVRAKTSNLP--IYSIL-----------------SLPNLKGYI 63
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+++ VY I+ V G+ + ++E ++ +V
Sbjct: 64 VLETPGLHIVYEAIRGLKHV-----KGKTSGTLRWEDLEALIKPRSLIE-------LIQV 111
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
GE V V GPF + +D+ ++ V + V
Sbjct: 112 GEEVEVVAGPFRGMKAKIIAIDKTRNEVSLNV 143
>gi|253571872|ref|ZP_04849277.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251838469|gb|EES66555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 105
Score = 39.7 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
+P+ + D ++ ++ + + ++S GE+V V GP G + NVD
Sbjct: 17 GESSPAVIPDEQMARFRFMLDYSEESISMNSSPLARGEKVRVIKGPLTGLVGELVNVDG- 75
Query: 150 KSRVHVEVVIFG 161
KS++ V + + G
Sbjct: 76 KSKIAVRLNMLG 87
>gi|237709842|ref|ZP_04540323.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229455935|gb|EEO61656.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 176
Score = 39.7 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ ++ + + + IP V +R GRK
Sbjct: 1 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 51
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + AV + ++ P + G+ V D ++ + + +
Sbjct: 52 DLIFVHAVQS-ELQKVKFKLPYFQYMIDIRNGQKII-VPDDQMRQFIAVAGTYDEHLIFF 109
Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V G +V ++ G F + G+ V + R V + + G
Sbjct: 110 SPDEVNLRKGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 153
>gi|224538594|ref|ZP_03679133.1| hypothetical protein BACCELL_03488 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519778|gb|EEF88883.1| hypothetical protein BACCELL_03488 [Bacteroides cellulosilyticus
DSM 14838]
Length = 185
Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 5 WYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY ++ YS + L ++ +++ + P RK +++
Sbjct: 14 WYALRITYSR-----ELVLKEFLDKNNIENFI-----PMRYEYVTRKEQRIRKLVPAIHN 63
Query: 64 YVLI-----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
V I K + + ++ + P V + ++ H + + Q+
Sbjct: 64 LVFIYSTRKKIDEIKEENAVLLPLRYIMD--RETKQPIIVPEIQMRHFIAIAGSYDQQVI 121
Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
P + + G+RV ++ G F GI V ++ V V I G
Sbjct: 122 YLPPTEYSMQKGDRVRITGGVFEGVEGIFVRVKGDR---RVVVSIQG 165
>gi|307565910|ref|ZP_07628369.1| transcription termination/antitermination factor NusG [Prevotella
amnii CRIS 21A-A]
gi|307345338|gb|EFN90716.1| transcription termination/antitermination factor NusG [Prevotella
amnii CRIS 21A-A]
Length = 191
Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFPG 63
WY +++++ + E +P E V ++ +G + +
Sbjct: 19 WYAIRLFTKSLQDVKAYFES---------FGYECFVPMEYVEIMKPEGGVGHILKPVIRN 69
Query: 64 YVLIKAVMTDKVYHTIKDTPK------VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
++ +K M + + K VI + + + ++ +
Sbjct: 70 FLFVKQTMDNDTFK--KSVLNAKFKISVIRKIDDNSQFALIPSKQMYDFRLMCNPEITLR 127
Query: 118 V----SSVFFEVGERVCVSDGPFASFNG 141
+VG +V V GP G
Sbjct: 128 KFLTEKEAQLKVGNKVFVKYGPMKGMTG 155
>gi|303285514|ref|XP_003062047.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456458|gb|EEH53759.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 468
Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
+ V +GPF F G + + V ++IFGR T V LA ++
Sbjct: 421 SIEVQEGPFKGFKGYITGNNT-NGSVEARLLIFGRETSVTLAADE 464
>gi|167763480|ref|ZP_02435607.1| hypothetical protein BACSTE_01854 [Bacteroides stercoris ATCC
43183]
gi|167698774|gb|EDS15353.1| hypothetical protein BACSTE_01854 [Bacteroides stercoris ATCC
43183]
Length = 183
Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 23/164 (14%)
Query: 5 WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
W+ ++V YS ++ L +++ + P ++ G++V
Sbjct: 13 WFAIRVSYSR-----ELALKAILDAENIENFI-----PMRYEYIMKSGKRVRKLLPAIHN 62
Query: 64 YVLIKAV--MTDKVYHTI-KDTPKVIGFLGTGE--NPSPVTDSEIEHIM----NQVEAAV 114
V + + D + + P I F+ E P + +S++ + N EA +
Sbjct: 63 LVFVYSTRKRIDTLKDRLESSMP--IRFIMNREHCRPVVIPESQMRSFILVAGNCDEAVL 120
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
+ + G++V ++ G F G + ++ RV V +
Sbjct: 121 YVEPAELHLVKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 163
>gi|320326982|gb|EFW82999.1| transcriptional regulator [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330882667|gb|EGH16816.1| transcriptional regulator [Pseudomonas syringae pv. glycinea str.
race 4]
Length = 170
Score = 39.7 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFFPGYVLIKAVMTDKV 75
+S+ + + ++ + P R R V ++ R FPGY+L++
Sbjct: 13 VHQSLITLIEQLDVE-----VYSPESTTYRKRPDRPSSVETKVRLFPGYLLLRFDPEVTH 67
Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
TI GF+ G + DS +E + RP+ + F
Sbjct: 68 TTTITALNGAHGFVQFGGRTCVMQDSTVEELKAVAMVRSNRPLDCIEF 115
>gi|307205686|gb|EFN83948.1| Translation initiation factor IF-2, mitochondrial [Harpegnathos
saltator]
Length = 623
Score = 39.7 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH 77
E I RL + ++ E + E ++ +K + + G +K + +
Sbjct: 502 VKEEINKRLPSLDAEEVIGEANVLQEFEITEKKKKVKVA------GCRCVKGNLKKAAMY 555
Query: 78 TIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
+ +V+ + + +EIE I VE ++ ++ F+ G+ V
Sbjct: 556 RVIREQEVL----YTGKLTSMKHMKNEIEMIKTNVECGLRFEDPTISFKPGDVV 605
>gi|298378134|ref|ZP_06988058.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298264962|gb|EFI06651.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 149
Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 4 RWYIVQ--VYSNCEKKA-----VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
RWY++ + +++ R R G + E PS G+ VN+
Sbjct: 26 RWYVLTLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVNT 83
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSP-VTDSEIEHIMN 108
+R YV + A ++ +K T + FL G + P ++D E++ +
Sbjct: 84 KRPLLYNYVFVHA--SEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRW 138
>gi|121707137|ref|XP_001271743.1| transcription initiation protein spt5 [Aspergillus clavatus NRRL 1]
gi|119399891|gb|EAW10317.1| transcription initiation protein spt5 [Aspergillus clavatus NRRL 1]
Length = 1045
Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ + E++ V SI R+ P + + + +G GY+ +
Sbjct: 237 VRCKAGKEREVVFSIQKRIEERPPGSR-----KPMKIISAFERGG-------AMSGYIYV 284
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V ++D V V E+ ++ +V+ + + G
Sbjct: 285 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL-RVQKSEE-------LNPGG 332
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + G + ++ VD V V
Sbjct: 333 WVRIKRGKYQGDLAQIEEVDTNGLEVTV 360
>gi|330508664|ref|YP_004385092.1| 50S ribosomal protein L24 [Methanosaeta concilii GP-6]
gi|328929472|gb|AEB69274.1| ribosomal protein L24 [Methanosaeta concilii GP-6]
Length = 151
Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y+V+ +N E+ I + D + + +P GYV
Sbjct: 7 YVVKTTANQERSVANMIAQIARKEKYD--IRALLVP-----------------DVLKGYV 47
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L+++ + V I+ P + N E+EH + + +
Sbjct: 48 LVESPAPEIVDQAIQGIPHARSVIKGASNI-----GEVEHFLTP-------KPAVIGINE 95
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G V + GPF VK VD K + VE+
Sbjct: 96 GAIVELISGPFKGEKARVKRVDLAKEEITVEL 127
>gi|288559740|ref|YP_003423226.1| ribosomal protein L24 family [Methanobrevibacter ruminantium M1]
gi|288542450|gb|ADC46334.1| ribosomal protein L24 family [Methanobrevibacter ruminantium M1]
Length = 163
Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 21/171 (12%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ + E+ +G + + G+D + I +P GY+
Sbjct: 9 FALKTSAGQERTVARLLGMKADKPGVD--IKAIVVPE-----------------SLKGYI 49
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++++ + + + G +G + + S+I + +V+ ++ +
Sbjct: 50 IVESATNLDMKNPDMKVRHLRGIVGAKRDGTIDPSSQIT--LEEVKKFLKPQPIISSIQK 107
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G V + GPF V +DE + V +E++ PV + +Q+ I
Sbjct: 108 GSIVELVSGPFKGEKSKVVRLDESREEVVLELIEAAVPIPVTVKADQIRII 158
>gi|29345872|ref|NP_809375.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337765|gb|AAO75569.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
VPI-5482]
Length = 184
Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY VQ + E E +G L + G+++ + I G+K
Sbjct: 14 KAWYAVQTFYCKE----EHLGKYLEKKGVNYFIPMRYI----EHETLDGKKHRKLTPAVH 65
Query: 63 GYVLIKAVMTD-KVYHTIKD--TPKVIGFLGTGENPS----PVTDSEIEHIMNQVEAAVQ 115
+ I+ T+ ++ +KD P FL + + + D E+ + +
Sbjct: 66 NLLFIEKEFTEKELLERVKDCTIP----FLLVRDRSTRRCYEIPDCEMLEFRAVCDPNYK 121
Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGI 142
+ G+ V V GPFA G
Sbjct: 122 GTLYVDTVTAEARPGQAVRVIRGPFAGLEGK 152
>gi|321309525|ref|YP_004191854.1| transcription antitermination protein [Mycoplasma haemofelis str.
Langford 1]
gi|319801369|emb|CBY92015.1| transcription antitermination protein [Mycoplasma haemofelis str.
Langford 1]
Length = 294
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
F G+++ ++ E+ + V V +FGR PV ++V +I
Sbjct: 256 GFKGVIQEINFEEGTLVVGVQMFGRRQPVACKISEVSEI 294
Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 36/147 (24%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSE-RVVS-----------VRKGR 52
WY ++ N E K I +S L + E+ E +VV ++G
Sbjct: 11 WYTLRSLVN-EDKLTSLISDYVSHHKLGDRILEVKFFQEFKVVEGEEISSDSDLLPKRGF 69
Query: 53 K------------------VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
K ERR F G + IK ++ + F+G N
Sbjct: 70 KSSPTSVWVKLANGNYKRLKVVERRPFKGMIFIKMEHDHDLFRLARVWDPNSQFMGYP-N 128
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSV 121
P P+TD + M + E ++ + V +
Sbjct: 129 PIPITDVQ----MKKTEESIDKSVPDI 151
>gi|212693036|ref|ZP_03301164.1| hypothetical protein BACDOR_02543 [Bacteroides dorei DSM 17855]
gi|212664403|gb|EEB24975.1| hypothetical protein BACDOR_02543 [Bacteroides dorei DSM 17855]
Length = 184
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ ++ + + + IP V +R GRK
Sbjct: 9 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 59
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + AV + ++ P + G+ V D ++ + + +
Sbjct: 60 DLIFVHAVQS-ELQKVKFKLPYFQYMIDIRNGQKII-VPDDQMRQFIAVAGTYDEHLIFF 117
Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V G +V ++ G F + G+ V + R V + + G
Sbjct: 118 SPDEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 161
>gi|288560120|ref|YP_003423606.1| ribosomal protein L24P Rpl24p [Methanobrevibacter ruminantium M1]
gi|288542830|gb|ADC46714.1| ribosomal protein L24P Rpl24p [Methanobrevibacter ruminantium M1]
Length = 113
Score = 39.3 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E S+ +VG++V V G F G V+++D ++ +V
Sbjct: 16 PLHIRRKIMSANLSK-ELRADIGKRSLPIKVGDKVQVVRGDFKGHEGKVESIDAKRYKVT 74
Query: 155 VE 156
VE
Sbjct: 75 VE 76
>gi|150399472|ref|YP_001323239.1| 50S ribosomal protein L24P [Methanococcus vannielii SB]
gi|132817|sp|P14034|RL24_METVA RecName: Full=50S ribosomal protein L24P
gi|166222074|sp|A6UQ55|RL24_METVS RecName: Full=50S ribosomal protein L24P
gi|44759|emb|CAA34691.1| unnamed protein product [Methanococcus vannielii]
gi|150012175|gb|ABR54627.1| ribosomal protein L24 [Methanococcus vannielii SB]
Length = 119
Score = 39.3 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + +S + ++++ + +++ + G+ V V G F G V V+ ++
Sbjct: 20 PLHLRNSVMSAMLSKA-LKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKII 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|294934182|ref|XP_002781020.1| hypothetical protein Pmar_PMAR018070 [Perkinsus marinus ATCC 50983]
gi|239891191|gb|EER12815.1| hypothetical protein Pmar_PMAR018070 [Perkinsus marinus ATCC 50983]
Length = 1259
Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGE-RVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ D I ++ R VGE V + NG ++ + +E + V
Sbjct: 877 MKDVPINRLIRLALHGGNRSDDDAPLAVGEAEVDLKSMALVELNGRIEEIRKEPPKCAVM 936
Query: 157 VVIFGRVTPV 166
+ I+ R T
Sbjct: 937 IDIWSRSTTA 946
>gi|320585909|gb|EFW98588.1| kow motif domain containing protein [Grosmannia clavigera kw1407]
Length = 391
Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
+ + SP+T E + VG+RV V++GP G VK +
Sbjct: 111 IRNESSASPITPREAAARCAWAGTP-----KRLCLAVGDRVVVTEGPLKGAIGAVKELRP 165
Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
E V + GR T + +A + V++
Sbjct: 166 EHG--TVTLDGVGR-TNITVAESLVQE 189
>gi|220925610|ref|YP_002500912.1| hypothetical protein Mnod_5780 [Methylobacterium nodulans ORS 2060]
gi|219950217|gb|ACL60609.1| hypothetical protein Mnod_5780 [Methylobacterium nodulans ORS 2060]
Length = 204
Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RW+ + CE K +++ R + +P R +R ++ +ER
Sbjct: 56 RWHAAVTFPGCEVKVRDAMQLRR---------IDTVLPMVRFWRIRSRKRFVAERPLLAR 106
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
V+ + I+ +V+ G + + + ++ + + +
Sbjct: 107 TVIFGLDHACQDIAGIEGLERVVR--GASVGWADLPEQDVYDLRLSILRGEFDATLRQDY 164
>gi|256842180|ref|ZP_05547685.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298374955|ref|ZP_06984912.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|256736496|gb|EEU49825.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298267455|gb|EFI09111.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length = 178
Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 31/173 (17%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ C K + + L ++ +P + + ++KG+KV +
Sbjct: 7 AQWYVMRDLKRCNAK-------KPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQ 59
Query: 63 GYVLI---KAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
+ + + + V Y +++T + P V+D E++ M V +
Sbjct: 60 DLLFVYDSRQHLDSIVERTKTLQYRWLRNTFR---------EPMTVSDLEMDRFMQAVSS 110
Query: 113 AVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ P G ++ + G + G + + K + + V + G
Sbjct: 111 SDSPKYYLPEEITPQMCGRKIRIIGGSLNGYEGCLLKIRGSKIK-RLLVELKG 162
>gi|253567873|ref|ZP_04845284.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298384765|ref|ZP_06994325.1| transcriptional regulator [Bacteroides sp. 1_1_14]
gi|251841946|gb|EES70026.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298263044|gb|EFI05908.1| transcriptional regulator [Bacteroides sp. 1_1_14]
Length = 181
Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
WY VQ + E E +G L + G+++ + I G+K
Sbjct: 11 KAWYAVQTFYCKE----EHLGKYLEKKGVNYFIPMRYI----EHETLDGKKHRKLTPAVH 62
Query: 63 GYVLIKAVMTD-KVYHTIKD--TPKVIGFLGTGENPS----PVTDSEIEHIMNQVEAAVQ 115
+ I+ T+ ++ +KD P FL + + + D E+ + +
Sbjct: 63 NLLFIEKEFTEKELLERVKDCTIP----FLLVRDRSTRRCYEIPDCEMLEFRAVCDPNYK 118
Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGI 142
+ G+ V V GPFA G
Sbjct: 119 GTLYVDTVTAEARPGQAVRVIRGPFAGLEGK 149
>gi|150401817|ref|YP_001325583.1| 50S ribosomal protein L24P [Methanococcus aeolicus Nankai-3]
gi|166222068|sp|A6UWU9|RL24_META3 RecName: Full=50S ribosomal protein L24P
gi|150014520|gb|ABR56971.1| ribosomal protein L24 [Methanococcus aeolicus Nankai-3]
Length = 119
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + ++++ + + +++ + G+ V + G F G V VD + +++
Sbjct: 20 PLHARNKLMSAMLSK-DLKEKYNKNALPVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIY 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|254882990|ref|ZP_05255700.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319641831|ref|ZP_07996509.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_40A]
gi|254835783|gb|EET16092.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317386558|gb|EFV67459.1| transcription termination/antitermination factor NusG [Bacteroides
sp. 3_1_40A]
Length = 203
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 37/148 (25%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP-- 62
WY ++ EKKA + I ++ + V + G++ E P
Sbjct: 70 WYALRTTYGREKKAYDYIKVKVELLSI--------------VRLVDGKRKTVEESRLPNI 115
Query: 63 -----------GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
+V + + Y+ K + P V++++IE +
Sbjct: 116 FFAYGTEEEIKSFVYDNVNLPYLRFYYRYFHISK-----KVEKEPLIVSNNQIESLRIIC 170
Query: 111 EAAVQRPVSSVF----FEVGERVCVSDG 134
+A + S+ F+ G+ V + G
Sbjct: 171 KADADDIIVSIDEVQKFQKGQAVRILKG 198
>gi|198445322|gb|ACH88387.1| NusG [Candidatus Liberibacter asiaticus]
Length = 25
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 25/25 (100%), Positives = 25/25 (100%)
Query: 153 VHVEVVIFGRVTPVELAYNQVEKIV 177
VHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 1 VHVEVVIFGRVTPVELAYNQVEKIV 25
>gi|329963112|ref|ZP_08300892.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
gi|328529153|gb|EGF56083.1| transcription termination/antitermination factor NusG [Bacteroides
fluxus YIT 12057]
Length = 204
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ Y+ E K + + R + H + + R+G+
Sbjct: 33 WYALRTYNCQEIKISDFLTDR----QMVHFIPMTYV----ERKNREGKVKRVLVPVVHNL 84
Query: 65 VLIKAVMTDKVYHTIKDTPK-------VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
+ ++ DK I V+ G+G+ + DS++ + +
Sbjct: 85 IFLR---KDKSQKEILSILGECMTPISVLRKEGSGDCY-EIPDSQMVEFRALCDPDFEDK 140
Query: 118 VS----SVFFEVGERVCVSDGPFASFNGIVKNVD 147
+ G+ V + G FA G + V+
Sbjct: 141 QFITHDEADAKPGKEVRIVHGQFAGMTGKLHRVN 174
>gi|294646634|ref|ZP_06724264.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|292638024|gb|EFF56412.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
Length = 99
Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
P+ + D ++ ++ + + ++ GE+V V GP + G + V
Sbjct: 5 GESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTVGG- 63
Query: 150 KSRVHVEVVIFG 161
KS++ V + + G
Sbjct: 64 KSKIAVRLNMLG 75
>gi|218534697|ref|YP_002424459.1| similar to transcriptional activator [Yersinia pseudotuberculosis]
gi|218473166|emb|CAQ76594.1| similar to transcriptional activator [Yersinia pseudotuberculosis]
Length = 152
Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFFP 62
WY+ E + LSR +D P R+ R R F
Sbjct: 4 WYLACHQPGKETLYKAQLE--LSRLHIDS-----FCPLIRLSRPRPDRPSGRLIIEPLFS 56
Query: 63 GYVLIKAVMTDKVYHTIKDT--PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GY+ I+ ++ HT K T V F+ G + P+ + IE +M ++ V +
Sbjct: 57 GYIFIQFDP--EITHTTKLTALSSVSHFVKFGCDIRPIPKTVIESLMKLPLCPTEQDVIA 114
Query: 121 VFFEV 125
F+
Sbjct: 115 GRFKE 119
>gi|255008330|ref|ZP_05280456.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
Length = 212
Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ L+ G+++ + P +++ R+V
Sbjct: 41 WYALRITYGRE----LALQEYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 91
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 92 VFVRS--SRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDS---QMRNFMAVSANYDES 146
Query: 120 SVFFEV-------GERVCVSDGPFASFNGIV 143
++FE G RV ++ G F G
Sbjct: 147 LLYFEPSELNIRKGTRVRITGGLFEGVEGEF 177
>gi|218132117|ref|ZP_03460921.1| hypothetical protein BACEGG_03745 [Bacteroides eggerthii DSM 20697]
gi|317477643|ref|ZP_07936857.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
gi|217985686|gb|EEC52027.1| hypothetical protein BACEGG_03745 [Bacteroides eggerthii DSM 20697]
gi|316906191|gb|EFV27931.1| transcription termination factor nusG [Bacteroides eggerthii
1_2_48FAA]
Length = 177
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 11/146 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + E +S+ RL +HL + +P+ VVS K R+ SE
Sbjct: 6 KYWFAARTRDKQEFAICKSL-SRLKSE--EHLDVDYYLPTRIVVSQLKYRRKRSEVPVIR 62
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF----LGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
V I+ T + + + V F L T V D ++ M ++
Sbjct: 63 NLVFIRT--TKQTACDLSNVYGVRLFYMKDLFTRSMLV-VPDKQMSDFMFVMDLNPDGVS 119
Query: 119 SSV-FFEVGERVCVSDGPFASFNGIV 143
VG+RV V G G V
Sbjct: 120 FDNGSLVVGDRVRVVKGDLTGVEGEV 145
>gi|270297042|ref|ZP_06203241.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273029|gb|EFA18892.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 178
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 18/163 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY ++ E A+ + G IP + + ++K +KV +
Sbjct: 10 WYAMRATYRREPDAMHLLKK--ENLG-------CFIPMQYKICIKKRKKVRALVPVVHNL 60
Query: 65 VLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
+ + A ++ +V + + +G+ V D +++ +
Sbjct: 61 LFVHARPSNVQRVKSQVTYLQYITD-TRSGQKII-VPDGQMQRFIAVSGTYDDHLLYFQP 118
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G +V ++ G F GI V + R V + I G
Sbjct: 119 DELNLSKGTKVRITGGEFEGQEGIFLKVKGARDR-RVVIEIQG 160
>gi|150005956|ref|YP_001300700.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|254881848|ref|ZP_05254558.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319641132|ref|ZP_07995835.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
gi|149934380|gb|ABR41078.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|254834641|gb|EET14950.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317387263|gb|EFV68139.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
Length = 182
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ ++ + + + IP V +R GRK
Sbjct: 7 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + +V + ++ P + G+ V D ++ + + +
Sbjct: 58 DLIFVHSVQS-ELQKVKFKLPYFQYMIDIRNGQKII-VPDDQMRQFIAVAGTYDEHLIFF 115
Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V G +V ++ G F + G+ V + R V + + G
Sbjct: 116 SPDEVNLRKGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159
>gi|145347649|ref|XP_001418275.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578504|gb|ABO96568.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 938
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + AV + + F G++V + +G + G+V+ +D + RV V
Sbjct: 303 LAALSKAVGTRKTDLKFMPGDQVIIVEGDLRNLEGVVERIDPD-GRVVVN 351
>gi|307594170|ref|YP_003900487.1| NusG antitermination factor [Vulcanisaeta distributa DSM 14429]
gi|307549371|gb|ADN49436.1| NusG antitermination factor [Vulcanisaeta distributa DSM 14429]
Length = 156
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 31/176 (17%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ R Y ++ N E + R GLD ++ +
Sbjct: 8 MSCRVYALRAVGNQEYNVAFMLKARTEHKGLD----KVKV------------TAIVVLPA 51
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
G+V ++ + ++ G + + V+ V
Sbjct: 52 LKGFVFVEGSLPYEIQDLATGIKHYRGMVRG---------------VMSVDEIVSSLAKP 96
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V VG+ V + PF + G V ++D ++ +V++E++ P+ + V KI
Sbjct: 97 VEINVGDVVEIIVEPFKGYRGKVVDIDRQRGQVYLELLDSSSTMPIIVNIRGVRKI 152
>gi|255015010|ref|ZP_05287136.1| putative transcriptional regulator Updx-like protein [Bacteroides
sp. 2_1_7]
Length = 178
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 31/173 (17%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ C K + + L ++ +P + + ++KG+KV +
Sbjct: 7 AQWYVMRDLKRCNAK-------KPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQ 59
Query: 63 GYVLI---KAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
+ + + + V Y +++T + P V+D E++ + V +
Sbjct: 60 DLLFVYDSRQHLDSIVERTKTLQYRWLRNTFR---------EPMTVSDLEMDRFIQAVSS 110
Query: 113 AVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ P G ++ + G + G + + K + + V + G
Sbjct: 111 SDSPKYYLPEEITPQMCGHKIRIIGGALNGYEGCLLKIRGSKIK-RLLVELKG 162
>gi|124486398|ref|YP_001031014.1| 50S ribosomal protein L24A [Methanocorpusculum labreanum Z]
gi|124363939|gb|ABN07747.1| LSU ribosomal protein L24A [Methanocorpusculum labreanum Z]
Length = 158
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 32/154 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
YI++ S E+ ++I + + +V + E + GYV
Sbjct: 11 YILKTTSKHERTVADNIREAIEN-NMTDVVVTAVVVPEDIK----------------GYV 53
Query: 66 LIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-F 123
+++ ++ ++ L + EI+H + P +V
Sbjct: 54 FVESPEEHARIEELVESIAHARIVLKNET-----SLEEIKHFL--------VPKPAVSGI 100
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G V + GPF +VK VD K + VE+
Sbjct: 101 DEGTIVELIAGPFKGEKAVVKRVDHTKEEITVEL 134
>gi|295087699|emb|CBK69222.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 99
Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
P+ + D ++ ++ + + ++ GE+V V GP + G + V
Sbjct: 5 GESTPAVIPDEQMARFRFMLDYSDEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTVGG- 63
Query: 150 KSRVHVEVVIFG 161
KS++ V + + G
Sbjct: 64 KSKIAVRLNMLG 75
>gi|294644643|ref|ZP_06722394.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|292640015|gb|EFF58282.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
Length = 99
Score = 38.5 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
P+ + D ++ ++ + + ++ GE+V V GP + G + V
Sbjct: 5 GESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTVGG- 63
Query: 150 KSRVHVEVVIFG 161
KS++ V + + G
Sbjct: 64 KSKIAVRLNMLG 75
>gi|329954411|ref|ZP_08295503.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
gi|328527679|gb|EGF54672.1| transcription termination/antitermination factor NusG [Bacteroides
clarus YIT 12056]
Length = 161
Score = 38.5 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 25/152 (16%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ ++ E +A + + + +P V + +K
Sbjct: 10 WFAMRAPFCKELEAKRLLDKQAIEN---------FVPMCYKVFEKNNKKRKELVPAVHNL 60
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-------TGENPSPVTDSEIEHIMNQVEAAVQRP 117
+ ++ I++T + + FL +P V D ++ ++ +R
Sbjct: 61 IFVRT-----TRRIIRETKRTVPFLQYITMPDAGKNSPIIVPDIRMQQFISVSRLHNERL 115
Query: 118 V----SSVFFEVGERVCVSDGPFASFNGIVKN 145
+ + G RV V GPF G+
Sbjct: 116 IYLTPEEINLAKGTRVRVLGGPFDGVEGVFVK 147
>gi|237711903|ref|ZP_04542384.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|317474958|ref|ZP_07934227.1| glycogen synthase [Bacteroides eggerthii 1_2_48FAA]
gi|229454598|gb|EEO60319.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|316908861|gb|EFV30546.1| glycogen synthase [Bacteroides eggerthii 1_2_48FAA]
Length = 182
Score = 38.5 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 9/133 (6%)
Query: 36 TEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV-IGFLGTGE- 93
E+ P + +SV G++ E F + + + + ++ P + F G
Sbjct: 36 FEVFTPMKEQLSVHGGKRTREEVPFIQDLLFVH-DTQEAIDPFVEKYPTIQYRFQKGGGY 94
Query: 94 -NPSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
NP V D+++E ++ V + P G + + GP + G + V
Sbjct: 95 KNPMTVADADMERFIHAVSVSKNPKYYLPGELTPSMCGRHIRIVGGPLDGYEGKLLTVRG 154
Query: 149 EK-SRVHVEVVIF 160
K R+ VE+ F
Sbjct: 155 SKTKRLLVELPEF 167
>gi|313146053|ref|ZP_07808246.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134820|gb|EFR52180.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 186
Score = 38.5 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ L+ G+++ + P +++ R+V
Sbjct: 15 WYALRITYGRE----LALQEYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 66 VFVRS--SRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDS---QMRNFMAVSANYDES 120
Query: 120 SVFFEV-------GERVCVSDGPFASFNGIV 143
++FE G RV ++ G F G
Sbjct: 121 LLYFEPSELNIRKGTRVRITGGLFEGVEGEF 151
>gi|294775545|ref|ZP_06741055.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
gi|294450595|gb|EFG19085.1| transcription termination/antitermination factor NusG [Bacteroides
vulgatus PC510]
Length = 182
Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+W+ ++ + + + IP V +R GRK
Sbjct: 7 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
+ + +V + ++ P + G+ V D ++ + + +
Sbjct: 58 DLIFVHSVQS-ELQKVKFKLPYFQYMIDIRNGQKII-VPDDQMRQFIAVAGTYDEHLIFF 115
Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
V G +V ++ G F + G+ V + R V + + G
Sbjct: 116 SPDEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159
>gi|53712820|ref|YP_098812.1| putative transcriptional regulator UpxY-like protein [Bacteroides
fragilis YCH46]
gi|52215685|dbj|BAD48278.1| putative transcriptional regulator UpxY homolog [Bacteroides
fragilis YCH46]
Length = 186
Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ L+ G+++ + P +++ R+V
Sbjct: 15 WYALRITYGRE----LALQEYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 66 VFVRS--SRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDS---QMRNFMAVSANYDES 120
Query: 120 SVFFEV-------GERVCVSDGPFASFNGIV 143
++FE G RV ++ G F G
Sbjct: 121 LLYFEPSELNIRKGTRVRITGGLFEGVEGEF 151
>gi|261402345|ref|YP_003246569.1| ribosomal protein L24 [Methanocaldococcus vulcanius M7]
gi|261369338|gb|ACX72087.1| ribosomal protein L24 [Methanocaldococcus vulcanius M7]
Length = 120
Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + ++++ E + +++ G+ V + G F G V VD ++ R+H
Sbjct: 20 PLHLRKKVMSAMLSK-ELKEKLGKNAIPVRKGDVVRIMRGNFKGLEGEVVKVDLKRYRIH 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|237719412|ref|ZP_04549893.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229451272|gb|EEO57063.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 95
Score = 38.5 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
+P+ + D ++ ++ + + ++S GE+V V GP G + VD
Sbjct: 5 GESSPTIIPDEQMARFRFMLDYSEEAICMNSAPLARGEKVRVVKGPLTGLVGELVTVDG- 63
Query: 150 KSRVHVEVVIFG 161
+S++ V + + G
Sbjct: 64 RSKIAVRLNMLG 75
>gi|229525603|ref|ZP_04415008.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426]
gi|229339184|gb|EEO04201.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426]
Length = 130
Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
+ Q++ + + E G+ V V+ G FA I D + R + V + + P+
Sbjct: 62 LKQLDCEQLKHATKQLPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPM 120
Query: 167 ELA 169
+
Sbjct: 121 SIE 123
>gi|189465956|ref|ZP_03014741.1| hypothetical protein BACINT_02319 [Bacteroides intestinalis DSM
17393]
gi|189434220|gb|EDV03205.1| hypothetical protein BACINT_02319 [Bacteroides intestinalis DSM
17393]
Length = 177
Score = 38.2 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 12/163 (7%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + E + + S LD + +P++ V+S K R+ S
Sbjct: 6 KYWFAARTRDKQEFAIGKFLEKLKSNENLD---IDYYLPTKIVISQLKHRRKRSVVPVIR 62
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
+ + A T + I + V F + V D +++ M ++
Sbjct: 63 NLIFVCA--TKQTACDISNVYGVQLFYMKDLFTHSMLVVPDKQMKDFMFVMDLNPDGVSF 120
Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+G +V V G F G + E ++ +V + I G
Sbjct: 121 DNEPLTIGNKVKVVKGDFRGIEG---EIATEANKTYVVIRING 160
>gi|219850845|ref|YP_002465277.1| NusG antitermination factor [Methanosphaerula palustris E1-9c]
gi|219545104|gb|ACL15554.1| NusG antitermination factor [Methanosphaerula palustris E1-9c]
Length = 162
Score = 38.2 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 32/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ S E+ ++I + ++ + V + P E GYV
Sbjct: 16 FAIKTTSKQERTVADNIKKAVDQTDI--KVYSVMAPKE-----------------LQGYV 56
Query: 66 LIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
L++ +++ I+ P L +E+ H + V +PV S E
Sbjct: 57 LVETPEKLNRMEQLIERVPHARAILRGET-----ALAEVAHFL------VPKPVVSGIVE 105
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + + GPF IVK VD K + VE+
Sbjct: 106 -GTIIELIAGPFKGEKAIVKRVDSGKEEITVEL 137
>gi|307319523|ref|ZP_07598950.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306894895|gb|EFN25654.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 206
Score = 38.2 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--------TEITIPSERVVSVRKGRKVN 55
RWY ++ ++ + ++ ++ +I +PS ++ R
Sbjct: 5 RWYAIRTAPGY-QRMAAADERLPETRRMESIIERNCRKDGFDIFMPSF-YKELKHHRTNE 62
Query: 56 SERRFFP---GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV 98
++ FP GY + + + ++ +I L P+
Sbjct: 63 IIQKRFPFLVGYAFVN--LPRLNFEDLRRVDGIICLLRGSIGYGPL 106
>gi|256810635|ref|YP_003128004.1| ribosomal protein L24 [Methanocaldococcus fervens AG86]
gi|256793835|gb|ACV24504.1| ribosomal protein L24 [Methanocaldococcus fervens AG86]
Length = 120
Score = 38.2 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + ++++ E + +++ G+ V + G F G V VD ++ R++
Sbjct: 20 PLHLRKKVMSAMLSK-ELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVTKVDLKRYRIY 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|265762924|ref|ZP_06091492.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255532|gb|EEZ26878.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 186
Score = 38.2 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ L+ G+++ + P +++ R+V
Sbjct: 15 WYALRITYGRE----LALQEYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 66 VFVRS--SRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDS---QMCNFMAVSANYDES 120
Query: 120 SVFFEV-------GERVCVSDGPFASFNGIV 143
++FE G RV ++ G F G
Sbjct: 121 LLYFEPSELNIRKGTRVRITGGLFEGVEGEF 151
>gi|330974039|gb|EGH74105.1| hypothetical protein PSYAR_26494 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 177
Score = 38.2 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFFPGYVLIKAVMTDKV 75
+S+ + R ++ + P+ + R R + E R FPGY+L++
Sbjct: 13 VHQSLITSIERLDVE-----VYSPTRKTSRKRTDRPSSIEKEVRLFPGYLLLRFDPQVTH 67
Query: 76 YHTIKDTPKVIGFLGTGEN 94
TI GF+ G
Sbjct: 68 TTTITALNGAHGFVQFGGQ 86
>gi|67482217|ref|XP_656458.1| transcription initiation factor SPT5 [Entamoeba histolytica
HM-1:IMSS]
gi|56473661|gb|EAL51076.1| transcription initiation factor SPT5, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 774
Score = 38.2 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 31/150 (20%)
Query: 27 SRSGLDHLVTEITIPS-ERVVSVRKGR--------KVNSERRFFPGYVLIKAVMTDKVYH 77
+ LV +P+ E V +G + ER + G ++I + V
Sbjct: 330 KTYKMSQLVFNDIVPTQEEAVQFAQGEEMPAKGKLRYEKERNYKEGDLVIIINPDEHVQ- 388
Query: 78 TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--QRPVSSVFFEVGERVCVSDGP 135
G + +I + N+++ + + S++F VG+RV V+DG
Sbjct: 389 ------------GKKTKIVHIDGDKIIVMGNELDTPITLSKEDVSIYFNVGDRVKVTDGM 436
Query: 136 FASFNGIVKNVD-------EEKSRVHVEVV 158
+A+ GI++ + +K + + V
Sbjct: 437 YANETGIIEAIKGDEVFVFTDKKKSSICVS 466
>gi|255007990|ref|ZP_05280116.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
gi|313145706|ref|ZP_07807899.1| predicted protein [Bacteroides fragilis 3_1_12]
gi|313134473|gb|EFR51833.1| predicted protein [Bacteroides fragilis 3_1_12]
Length = 174
Score = 38.2 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 27/165 (16%)
Query: 1 MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
M + WY+ S E++ + + R R+ +P ++ +GR +
Sbjct: 9 MAEKQSCHWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRPKET 59
Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEH---IMNQVEA 112
+LI+A +D + + G + + + ++ + + ++
Sbjct: 60 LLPQITRCILIRASESD-----VLQLSGIQGLIIPQNIWEYRIPEWQVNSYQLLFSHIDT 114
Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
AV+ V V+ G G +D ++ + + +
Sbjct: 115 AVEWIPDCPELAP--MVRVTGGSLNGLVG---ELDTSETEMRIMI 154
>gi|223935506|ref|ZP_03627423.1| hypothetical protein Cflav_PD4995 [bacterium Ellin514]
gi|223895916|gb|EEF62360.1| hypothetical protein Cflav_PD4995 [bacterium Ellin514]
Length = 69
Score = 38.2 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
V K RV V + GR TPVE+ N V
Sbjct: 1 MRASVLEFLPAKQRVRVLLDFLGRPTPVEVDRNSV 35
>gi|159463654|ref|XP_001690057.1| global transcription factor [Chlamydomonas reinhardtii]
gi|158284045|gb|EDP09795.1| global transcription factor [Chlamydomonas reinhardtii]
Length = 1188
Score = 38.2 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRVTPVELAYNQVE 174
+ F G+ V + G + V V + ++V I FG VE +++
Sbjct: 423 AATKGTFMKGDTVRIVKGDLENLTARVTGVSADGTKVTAVPDIKGFGEE--VEFDMDELA 480
Query: 175 KI 176
K+
Sbjct: 481 KV 482
>gi|301162527|emb|CBW22073.1| putative transcriptional regulator [Bacteroides fragilis 638R]
Length = 212
Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ L+ G+++ + P +++ R+V
Sbjct: 41 WYALRITYGRE----LALQEYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 91
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 92 VFVRS--SRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDS---QMRNFMAVSANYDES 146
Query: 120 SVFFEVGE-------RVCVSDGPFASFNGIV 143
++FE E RV ++ G F G
Sbjct: 147 LLYFEPSELNIRKGIRVRITGGLFEGVEGEF 177
>gi|327313449|ref|YP_004328886.1| transcription termination/antitermination factor NusG [Prevotella
denticola F0289]
gi|326944178|gb|AEA20063.1| transcription termination/antitermination factor NusG [Prevotella
denticola F0289]
Length = 190
Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 16/145 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V++++ +E + GL+ + E I + GR R
Sbjct: 18 WYAVRLFTLR----LEDVRTFFREQGLECFIPEKYID----IEGHNGRPRQVLRPVVRNL 69
Query: 65 VLIKAVMTDKVYHTIKDTPK----VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-- 118
+ +K + +K++ I T V+ + + + ++ +
Sbjct: 70 IFVKQLADEKLFRKIIQTANYKISVLRKSKDSQEYALIPHGQMYEFRLMCNPEITMRKFL 129
Query: 119 --SSVFFEVGERVCVSDGPFASFNG 141
+ G+ V V GP +G
Sbjct: 130 SSEEARMKAGDEVYVRFGPLKGLSG 154
>gi|325856668|ref|ZP_08172306.1| transcription termination/antitermination factor NusG [Prevotella
denticola CRIS 18C-A]
gi|325483382|gb|EGC86357.1| transcription termination/antitermination factor NusG [Prevotella
denticola CRIS 18C-A]
Length = 190
Score = 38.2 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 16/145 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY V++++ +E + GL+ + E I + GR R
Sbjct: 18 WYAVRLFTLR----LEDVRTFFREQGLECFIPEKYID----IEGHNGRPRQVLRPVVRNL 69
Query: 65 VLIKAVMTDKVYHTIKDTPK----VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-- 118
+ +K + +K++ I T V+ + + + ++ +
Sbjct: 70 IFVKQLADEKLFRKIIQTANYKISVLRKSKDSQEYALIPHGQMYEFRLMCNPEITMRKFL 129
Query: 119 --SSVFFEVGERVCVSDGPFASFNG 141
+ G+ V V GP +G
Sbjct: 130 SSEEARMKAGDEVYVRFGPLKGLSG 154
>gi|294494867|ref|YP_003541360.1| 50S ribosomal protein L24A [Methanohalophilus mahii DSM 5219]
gi|292665866|gb|ADE35715.1| LSU ribosomal protein L24A [Methanohalophilus mahii DSM 5219]
Length = 152
Score = 38.2 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 35/162 (21%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++++ +N E+ + + LD + + P E GYV
Sbjct: 8 FVIKTTANQERSVAGMLAKVAKKENLD--IRALLAPDE-----------------LKGYV 48
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FE 124
L ++ +V I+ P + + EI H + P +V
Sbjct: 49 LAESSNPGEVEQAIQTVPHARALVKGQS-----SMEEIMHFL--------TPKPTVTGIT 95
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
G + V+ GPF VK VDE + V +F V P+
Sbjct: 96 EGAIIEVTSGPFKGEKARVKRVDEGHE--EITVELFDAVVPI 135
>gi|330904859|gb|EGH35431.1| hypothetical protein PSYJA_43039 [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 40
Score = 38.2 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 75 VYHTIKDTPKVIGFLGTGENPS 96
+H +KDTP+V+GF+G +P
Sbjct: 1 TWHLVKDTPRVMGFIGGTASPV 22
>gi|145612057|ref|XP_001411770.1| hypothetical protein MGG_12268 [Magnaporthe oryzae 70-15]
gi|145019303|gb|EDK03531.1| hypothetical protein MGG_12268 [Magnaporthe oryzae 70-15]
Length = 1026
Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 32/169 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
+ V+ E++ V SI R+ R G ++ +S+ + GY
Sbjct: 206 WAVRCKEGKEREVVWSIMKRIEQRMG-----------TKEELSITSAFERGGTASVMKGY 254
Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
V ++A + + + V P T + I + + + +
Sbjct: 255 VYVEANRSTDIMVALDGLLNVY----------PRTKMLLVEIKDMPDLLRVQKTPE--LK 302
Query: 125 VGERVCVSDGP-FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
VG+ V + P +A +V+NV E + V+V R L Y Q
Sbjct: 303 VGDHVRLKRPPRYAGDLAVVRNVTENG--LEVQVAFLPR-----LDYGQ 344
>gi|3355884|dbj|BAA31975.1| NusG-like protein [Streptomyces lavendulae]
Length = 19
Score = 38.2 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 158 VIFGRVTPVELAYNQVEK 175
IFGR TPVEL+++Q++K
Sbjct: 1 EIFGRETPVELSFDQIQK 18
>gi|15668644|ref|NP_247442.1| 50S ribosomal protein L24P [Methanocaldococcus jannaschii DSM 2661]
gi|1710522|sp|P54038|RL24_METJA RecName: Full=50S ribosomal protein L24P
gi|1591169|gb|AAB98456.1| LSU ribosomal protein L24P (rplX) [Methanocaldococcus jannaschii
DSM 2661]
Length = 120
Score = 37.8 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + ++++ E + +++ G+ V + G F G V VD ++ R++
Sbjct: 20 PLHLRRKVMSAMLSK-ELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIY 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|60681050|ref|YP_211194.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
gi|60492484|emb|CAH07254.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
Length = 199
Score = 37.8 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ L+ G+++ + P +++ R+V
Sbjct: 28 WYALRITYGRE----LALQEYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 78
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 79 VFVRS--SRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDS---QMRNFMAVSANYDES 133
Query: 120 SVFFEV-------GERVCVSDGPFASFNGIV 143
++FE G RV ++ G F G
Sbjct: 134 LLYFEPSELNIRKGTRVRITGGLFEGVEGEF 164
>gi|319902599|ref|YP_004162327.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
gi|319417630|gb|ADV44741.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
Length = 108
Score = 37.8 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + E K ++ + + +G P + V G+K F G
Sbjct: 10 WHALYTPPKSEHKLMQYL----NAAGYATY-----CPMQVVFVKWNGKKKEIVTPLFSGC 60
Query: 65 VLI 67
+ +
Sbjct: 61 LFV 63
>gi|150004276|ref|YP_001299020.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
gi|149932700|gb|ABR39398.1| putative transcriptional regulator UpxY-like protein [Bacteroides
vulgatus ATCC 8482]
Length = 185
Score = 37.8 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 9/129 (6%)
Query: 39 TIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPS 96
IP + ++ G + V + + ++ P + GE
Sbjct: 34 FIPMRYEIHLKNGHRRRELVPVIRDIVFVHTTQS-ELQRIKYGIPYFQYMMDIRNGEKII 92
Query: 97 PVTDSEIEHIMNQVEAAVQRPVS----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
V D ++ + ++ + V G +V ++ G F + G+ V + R
Sbjct: 93 -VPDEQMRRFIAVAGTYDEQIIFFSPDEVNLRKGTKVRITGGQFEGYEGVFVKVKGSRDR 151
Query: 153 VHVEVVIFG 161
V + + G
Sbjct: 152 -RVVISLQG 159
>gi|99081515|ref|YP_613669.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040]
gi|99037795|gb|ABF64407.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040]
Length = 189
Score = 37.8 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 60/210 (28%)
Query: 1 MTPRWYIVQVYSNC-------EK-KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR 52
MT WY+ + + EK + ++ +L G++ R+ R G+
Sbjct: 1 MT--WYLGRTTTRHIAPEPGAEKERGEFAVERQLRALGIEAHAPR------RIEFKRVGK 52
Query: 53 KVNSE---RRFFPGYVLIK--------------------AVMTDKVYHTIK-DTPKVIGF 88
K ++E + PGY+ + AV +V H +K KV
Sbjct: 53 KRHAEPITSAYLPGYIFAEIPASMFTRAIQCRGLSASLMAVPAQEVLHHVKPFIAKVKS- 111
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS----FNGIVK 144
+++ E I+ + A F+ GE + V GPFA F +V+
Sbjct: 112 ----------ENADAERIIESRDRAAMCQ-----FQPGEALDVLAGPFAERLVKFTRMVE 156
Query: 145 NVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ + ++ I GR+T V++ V
Sbjct: 157 AAHDSYPMIEAQIEILGRLTRVKIDPLDVR 186
>gi|289193203|ref|YP_003459144.1| ribosomal protein L24 [Methanocaldococcus sp. FS406-22]
gi|288939653|gb|ADC70408.1| ribosomal protein L24 [Methanocaldococcus sp. FS406-22]
Length = 120
Score = 37.8 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + ++++ E + +++ G+ V + G F G V VD ++ R++
Sbjct: 20 PLHLRRKVMSAMLSK-ELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIY 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|296109309|ref|YP_003616258.1| ribosomal protein L24 [Methanocaldococcus infernus ME]
gi|295434123|gb|ADG13294.1| ribosomal protein L24 [Methanocaldococcus infernus ME]
Length = 121
Score = 37.8 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + ++++ E + +++ G+ V + G F G V VD ++ R++
Sbjct: 20 PLHLRRKVMSAMLSK-ELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVTKVDLKRYRIY 78
Query: 155 V 155
V
Sbjct: 79 V 79
>gi|298483360|ref|ZP_07001538.1| transcriptional regulator [Bacteroides sp. D22]
gi|298270489|gb|EFI12072.1| transcriptional regulator [Bacteroides sp. D22]
Length = 76
Score = 37.8 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74
Query: 62 P 62
P
Sbjct: 75 P 75
>gi|260592185|ref|ZP_05857643.1| putative UpdY protein [Prevotella veroralis F0319]
gi|260535819|gb|EEX18436.1| putative UpdY protein [Prevotella veroralis F0319]
Length = 188
Score = 37.8 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 16/145 (11%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++++ + + GL+ + E + + R G+ R
Sbjct: 18 WYAIKLFTVRQGEVRTYFEE----EGLECFIPEQYV----TIEGRDGKPREILRPVVRNL 69
Query: 65 VLIKAVMTDKVYHTIKDTP----KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-- 118
+ +K ++DK + I VI + S + +++ V
Sbjct: 70 IFVKQSISDKQFRKIVQEADYKISVIRKSRDSQEYSLIPHNQMYEFRLMCNPEVTMRKFV 129
Query: 119 --SSVFFEVGERVCVSDGPFASFNG 141
+ G+ V V GP G
Sbjct: 130 SSEEAHLKAGDEVLVKFGPMKGMTG 154
>gi|119180397|ref|XP_001241674.1| hypothetical protein CIMG_08837 [Coccidioides immitis RS]
Length = 1048
Score = 37.8 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 32/155 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS---ERRFFP 62
+ V+ E++ V +I R+ ER + R ++ S
Sbjct: 229 WAVKCRPGKEREIVFNIMKRIE---------------ERHSASRNPIRITSAFERGGTMS 273
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++A V + + V F+ + + ++ E+ ++ +V+ + +
Sbjct: 274 GYVYVEARKQADVMDALDNLSNV--FIRS--KLTLISVKEMPDLL-RVQKSEE------- 321
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G V + G + ++ V E + + V V
Sbjct: 322 LQPGGWVRIKRGKYQGDLAQIEEV--ETNGLEVTV 354
>gi|1041015|gb|AAC44461.1| AnfA1 [Serratia entomophila]
Length = 154
Score = 37.8 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGR-LSRSGLDHLVTEI-TIPSERVVSVRKGRKVNSER 58
M +WY+++ +G + L GL PS +G + ++
Sbjct: 1 MKKKWYLIRC-----NYGKIDLGQKSLETYGLFEGFPAPNLKPSLEF----EGFYLTFQK 51
Query: 59 RFF--------PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
FF P Y+ ++ + I+ V GF+ G + D I IM
Sbjct: 52 NFFRKGMVYFSPPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGIKSIPDIVIGKIMK 109
>gi|270296612|ref|ZP_06202811.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272599|gb|EFA18462.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 176
Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%)
Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD--KVYHTIKDTPKVIGFLGTGENP 95
IP + +S+ +GRKV + V + A ++ + I + +G+
Sbjct: 32 CFIPMQYKISICRGRKVRALVPVIRNLVFVHARPSEVQRFKSQITYLQYITD-TRSGQKI 90
Query: 96 SPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
+ D +++ + + G +V ++ G F G+ V +
Sbjct: 91 I-IPDHDMQRFIAVAGTYNDHLLYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARD 149
Query: 152 RVHVEVVIFG 161
R V + I G
Sbjct: 150 R-RVVIAIQG 158
>gi|119500830|ref|XP_001267172.1| transcription initiation protein spt5 [Neosartorya fischeri NRRL
181]
gi|119415337|gb|EAW25275.1| transcription initiation protein spt5 [Neosartorya fischeri NRRL
181]
Length = 1050
Score = 37.8 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ + E++ V +I R+ P + + + +G GY+ +
Sbjct: 238 VRCKAGKEREVVFAIQKRIEERPPGSR-----KPIKIISAFERGG-------AMSGYIYV 285
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V ++D V V E+ ++ +V+ + + G
Sbjct: 286 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL-RVQKSEE-------LNPGG 333
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + G + ++ VD V V
Sbjct: 334 WVRIKRGKYQGDLAQIEEVDTNGLEVTV 361
>gi|288803665|ref|ZP_06409095.1| putative UpdY [Prevotella melaninogenica D18]
gi|288333905|gb|EFC72350.1| putative UpdY [Prevotella melaninogenica D18]
Length = 189
Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 9/115 (7%)
Query: 36 TEITIPSERV-VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK----VIGFLG 90
E +P + V V R G+ + R + +K D + I V+
Sbjct: 40 LECFVPEQYVDVEGRDGKPHSVLRPVVRNLIFVKMPGEDISFQKIVQEANYKISVVKKAK 99
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRPVS----SVFFEVGERVCVSDGPFASFNG 141
+ + + ++ + + G+ V V GP G
Sbjct: 100 DSQEYALIPHDQMYEFRLMCNPEIMMRKFLSSDEAQMKAGDEVLVKFGPLKGMTG 154
>gi|253563192|ref|ZP_04840649.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251946968|gb|EES87250.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 186
Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 26/151 (17%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY +++ E ++ G L+ G+++ + P +++ R+V
Sbjct: 15 WYALRITYGRE----LALQGYLNSEGIENFI-----PMHYEYTIKNERRVRKLVPAVHNL 65
Query: 65 VLIKAVMTDKVYHTIKDTPKVI---GFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVS 119
V +++ + IK++ ++ E P V DS + N + + S
Sbjct: 66 VFVRS--SRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDS---QMRNFMAVSANYDES 120
Query: 120 SVFFEV-------GERVCVSDGPFASFNGIV 143
++FE G RV ++ G F G
Sbjct: 121 LLYFEPSELNIRKGTRVRITGGLFEGVEGEF 151
>gi|320164915|gb|EFW41814.1| hypothetical protein CAOG_06946 [Capsaspora owczarzaki ATCC 30864]
Length = 287
Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
+ +++ V G++V + GP G V ++ R+ V V + R
Sbjct: 38 IKKLDLLTPHLVPKPKLRKGDKVQIVGGPHIGQRGEVVSIYRRSGRITVAGVNMVNRTLK 97
Query: 166 VE 167
E
Sbjct: 98 TE 99
>gi|297619577|ref|YP_003707682.1| ribosomal protein L24 [Methanococcus voltae A3]
gi|297378554|gb|ADI36709.1| ribosomal protein L24 [Methanococcus voltae A3]
Length = 119
Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + ++ + ++++ E + +S+ + G+ V V G F G V +V+ + V
Sbjct: 20 PLHLRNNLMSAMLSK-ELKEKLNKNSIPLKKGDLVKVMRGNFKGVEGEVTSVNYKNYNVV 78
Query: 155 V 155
V
Sbjct: 79 V 79
>gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822]
gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822]
Length = 1006
Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
S++ F+ G+RV DG + G +K++ + V + + V PV+L
Sbjct: 953 SAIKFKPGDRVID-DGGWK---GTIKSIHPNGKKAQVYLDLMESVHPVDLD 999
>gi|300709995|ref|YP_003735809.1| pyruvate phosphate dikinase PEP/pyruvate-binding protein
[Halalkalicoccus jeotgali B3]
gi|299123678|gb|ADJ14017.1| pyruvate phosphate dikinase PEP/pyruvate-binding protein
[Halalkalicoccus jeotgali B3]
Length = 902
Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 22 IGGRLSRSGLDHLVTEITIPSERVVS---VRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
+ R + L++E++ P + R+G + +ER + + + +T+ +
Sbjct: 396 LRIDALRDDVPELLSEVSEPMGAAIEDLLARRGDEFRTERSA-RDVLGVLSPLTNTAWAV 454
Query: 79 IKDTPKVI----GFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
++ P V GF+G P+P TD E I EAA Q ERV
Sbjct: 455 VRGLPFVRGMMGGFVGAFVGTPNPPTDEEALWIEWGREAAAQITGRETLV---ERVKAPF 511
Query: 134 GPFASFNGI 142
G F + + +
Sbjct: 512 GLFETVDAV 520
>gi|189460908|ref|ZP_03009693.1| hypothetical protein BACCOP_01555 [Bacteroides coprocola DSM 17136]
gi|265768148|ref|ZP_06095530.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|319643827|ref|ZP_07998420.1| hypothetical protein HMPREF9011_04023 [Bacteroides sp. 3_1_40A]
gi|189432247|gb|EDV01232.1| hypothetical protein BACCOP_01555 [Bacteroides coprocola DSM 17136]
gi|263252399|gb|EEZ23935.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|317384568|gb|EFV65533.1| hypothetical protein HMPREF9011_04023 [Bacteroides sp. 3_1_40A]
Length = 192
Score = 37.8 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 25/151 (16%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ + Y N EKKA E + G+ GL++ + P V V G K P
Sbjct: 15 QWFAMSAYKN-EKKAEEMLKGK---DGLEYFI-----PKHYAVRVYHGVKSKRLVPVIPN 65
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-------GTGENPSPVTDSEIEHIMNQVEAAVQR 116
V + A I D K FL TG V D ++E + +
Sbjct: 66 LVFVHA-----SRKQITDFKKKYNFLQFMMWEKSTGLKYIVVPDKQMESFIKIASQYEEN 120
Query: 117 PV----SSVFFEVGERVCVSDGPFASFNGIV 143
+ + G +C+ G F G+
Sbjct: 121 TIYYKPEEIDIRKGTHICIYGGKFNGVKGVF 151
>gi|290982037|ref|XP_002673737.1| predicted protein [Naegleria gruberi]
gi|284087323|gb|EFC40993.1| predicted protein [Naegleria gruberi]
Length = 963
Score = 37.4 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE---VVIFGRVTPVELAYNQVEK 175
+F+ G+ V V G G + N+DEE + + I TP++ NQ++K
Sbjct: 351 KTYFKRGDNVRVIKGELRGMVGQITNIDEESQVITMLPKSNDI---NTPLQFTSNQLQK 406
>gi|326479052|gb|EGE03062.1| KOW domain-containing protein [Trichophyton equinum CBS 127.97]
Length = 356
Score = 37.4 bits (86), Expect = 0.74, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
+ + + V V F G+RVC+ G G V VDEE V VE V +F P
Sbjct: 86 LRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEESQSVTVEGVNMFDVEFP 145
Query: 166 V 166
Sbjct: 146 A 146
>gi|326469829|gb|EGD93838.1| hypothetical protein TESG_01370 [Trichophyton tonsurans CBS 112818]
Length = 356
Score = 37.4 bits (86), Expect = 0.74, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
+ + + V V F G+RVC+ G G V VDEE V VE V +F P
Sbjct: 86 LRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEESQSVTVEGVNMFDVEFP 145
Query: 166 V 166
Sbjct: 146 A 146
>gi|329964017|ref|ZP_08301271.1| transcription termination/antitermination factor NusG
[Bacteroides fluxus YIT 12057]
gi|328526440|gb|EGF53454.1| transcription termination/antitermination factor NusG
[Bacteroides fluxus YIT 12057]
Length = 114
Score = 37.4 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
W+ + E K + RL+ +G P + + KG+ F G
Sbjct: 16 WHALHTAPKSEHK----LMQRLNAAGYT-----TFCPMQAMFVKWKGQAKEVIVPLFSGC 66
Query: 65 VLI 67
+ +
Sbjct: 67 LFV 69
>gi|160890364|ref|ZP_02071367.1| hypothetical protein BACUNI_02805 [Bacteroides uniformis ATCC 8492]
gi|156860096|gb|EDO53527.1| hypothetical protein BACUNI_02805 [Bacteroides uniformis ATCC 8492]
Length = 183
Score = 37.4 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 22/150 (14%)
Query: 2 TPRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
WY V+ YS E E + +G+++ + P VRK R++
Sbjct: 6 EMHWYAVRVTYSR-ELFFKEYLDA----AGIENYI-----PMRYEYVVRKERRLRKLVPA 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQ 115
V +++ T + IK+ P I ++ E P + DS++ + Q
Sbjct: 56 VHNLVFVRS--TRERMDEIKNEPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQ 113
Query: 116 R----PVSSVFFEVGERVCVSDGPFASFNG 141
+ + G RV ++ G F G
Sbjct: 114 AVLYLEPTELNLSQGTRVRITGGIFEGVEG 143
>gi|282859692|ref|ZP_06268793.1| transcription termination/antitermination factor NusG [Prevotella
bivia JCVIHMP010]
gi|282587503|gb|EFB92707.1| transcription termination/antitermination factor NusG [Prevotella
bivia JCVIHMP010]
Length = 191
Score = 37.4 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 32/153 (20%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFFPG 63
WY V++++ K+ L E +P + V + +G + R
Sbjct: 19 WYAVRLFTLRLKEVKAYFEA---------LDYECFVPMQYVDIEKPEGGVKHELRPVTHN 69
Query: 64 YVLIKAVMTDKVY-----------HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
++ +K M++ + + I+ V F + + ++
Sbjct: 70 FIFVKQTMSEASFKKAVFGANFKINVIRKVDDVTQF-------ALIPSKQMYDFRMMCNP 122
Query: 113 AVQRPV----SSVFFEVGERVCVSDGPFASFNG 141
+ + G+ V V G G
Sbjct: 123 EITLRKFLSEREAQMKAGDPVLVKYGAMKGMTG 155
>gi|258578061|ref|XP_002543212.1| Spt5p protein [Uncinocarpus reesii 1704]
gi|237903478|gb|EEP77879.1| Spt5p protein [Uncinocarpus reesii 1704]
Length = 1052
Score = 37.4 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 26/152 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ E++ V +I R ++ P + +G GY+
Sbjct: 231 WAVKCRPGKEREIVFNIMKR-----MEERHPGSRNPLRITSAFERGG-------TMSGYI 278
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++A V +++ V F+ + + ++ E+ ++ +V+ + + +
Sbjct: 279 YVEARKQADVMDALENLSNV--FIRS--KLTLISVKEMPDLL-RVQKSEE-------LQP 326
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G V + G + ++ V E + + V V
Sbjct: 327 GGWVRIKRGKYQGDLAQIEEV--ETNGLEVTV 356
>gi|159125111|gb|EDP50228.1| transcription initiation protein spt5 [Aspergillus fumigatus A1163]
Length = 1058
Score = 37.4 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 24/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ + E++ V +I R+ P + + +G GY+ +
Sbjct: 246 VRCKAGKEREVVFAIQKRIEERPPGSR-----KPIRIISAFERGG-------AMSGYIYV 293
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V ++D V V E+ ++ +V+ + + G
Sbjct: 294 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL-RVQKSEE-------LNPGG 341
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + G + ++ VD V V
Sbjct: 342 WVRIKRGKYQGDLAQIEEVDTNGLDVTV 369
>gi|126178361|ref|YP_001046326.1| ribosomal protein L24 [Methanoculleus marisnigri JR1]
gi|125861155|gb|ABN56344.1| LSU ribosomal protein L24A [Methanoculleus marisnigri JR1]
Length = 157
Score = 37.4 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 31/153 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++ + E+ ++I +SR D V + +P E GYV
Sbjct: 9 YAIKTTAKQERTVADNIEK-VSREQKDIHVMAVMVPEE-----------------LKGYV 50
Query: 66 LIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
L+++ ++ ++ P + SE+EH + V +PV S
Sbjct: 51 LVESPDSIARIEQLVELIPHARAVVQGST-----ALSEVEHFL------VPKPVVS-GIT 98
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G V + GPF +VK +D K + VE+
Sbjct: 99 EGTIVEIIAGPFKGEKAVVKRIDTGKEEITVEL 131
>gi|70994272|ref|XP_751976.1| transcription initiation protein spt5 [Aspergillus fumigatus Af293]
gi|74671343|sp|Q4WP96|SPT5_ASPFU RecName: Full=Transcription elongation factor spt5; AltName:
Full=Chromatin elongation factor spt5
gi|66849610|gb|EAL89938.1| transcription initiation protein spt5 [Aspergillus fumigatus Af293]
Length = 1058
Score = 37.4 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 24/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ + E++ V +I R+ P + + +G GY+ +
Sbjct: 246 VRCKAGKEREVVFAIQKRIEERPPGSR-----KPIRIISAFERGG-------AMSGYIYV 293
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V ++D V V E+ ++ +V+ + + G
Sbjct: 294 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL-RVQKSEE-------LNPGG 341
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + G + ++ VD V V
Sbjct: 342 WVRIKRGKYQGDLAQIEEVDTNGLDVTV 369
>gi|1663764|gb|AAB18640.1| T54 protein [Homo sapiens]
Length = 378
Score = 37.0 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 107 MNQVEAAVQRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
M + + ++ G V V GP G V+ +D + R V + ++ RV
Sbjct: 221 MPRPDEEQEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVWSRVV 280
Query: 165 PV 166
V
Sbjct: 281 TV 282
>gi|88601955|ref|YP_502133.1| NusG antitermination factor [Methanospirillum hungatei JF-1]
gi|88187417|gb|ABD40414.1| LSU ribosomal protein L24A [Methanospirillum hungatei JF-1]
Length = 160
Score = 37.0 bits (85), Expect = 1.00, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 32/154 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ + E+ ++I + + D V + +P E GYV
Sbjct: 11 FAVKTTNRAERSVADNIDKAVRDADNDIRVMSVIVPDE-----------------LKGYV 53
Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-F 123
L++ +V ++ P L P T E+ H + P +V
Sbjct: 54 LVETDEPIARVQELMEHVPSARTVL-----PGVTTLEEVGHYL--------IPKPAVSGI 100
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G V + +GPF +VK VD K + VE+
Sbjct: 101 DEGTIVELINGPFKGEKAVVKRVDASKEEITVEL 134
>gi|303321271|ref|XP_003070630.1| KOW motif containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110326|gb|EER28485.1| KOW motif containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 1051
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 30/153 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS---ERRFFP 62
+ V+ E++ V +I R+ ER + R ++ S
Sbjct: 232 WAVKCRPGKEREIVFNIMKRIE---------------ERHPASRNPIRITSAFERGGTMS 276
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV I+A V + + V F+ + + ++ E+ ++ +V+ + +
Sbjct: 277 GYVYIEARKQADVMDALDNLSNV--FIRS--KLTLISVKEMPDLL-RVQKSEE------- 324
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ G V + G + ++ V+ V V
Sbjct: 325 LQPGGWVRIKRGKYQGDLAQIEEVETNGLEVTV 357
>gi|189466915|ref|ZP_03015700.1| hypothetical protein BACINT_03297 [Bacteroides intestinalis DSM
17393]
gi|189435179|gb|EDV04164.1| hypothetical protein BACINT_03297 [Bacteroides intestinalis DSM
17393]
Length = 155
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
WY+++VY N E A + + + E IP ++V+ KG+KV
Sbjct: 28 WYVMRVYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 79
Query: 65 VLIKA 69
V + A
Sbjct: 80 VFVHA 84
>gi|320035888|gb|EFW17828.1| transcription elongation factor spt5 [Coccidioides posadasii str.
Silveira]
Length = 1051
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 30/153 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS---ERRFFP 62
+ V+ E++ V +I R+ ER + R ++ S
Sbjct: 232 WAVKCRPGKEREIVFNIMKRIE---------------ERHPASRNPIRITSAFERGGTMS 276
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV I+A V + + V F+ + + ++ E+ ++ +V+ + +
Sbjct: 277 GYVYIEARKQADVMDALDNLSNV--FIRS--KLTLISVKEMPDLL-RVQKSEE------- 324
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ G V + G + ++ V+ V V
Sbjct: 325 LQPGGWVRIKRGKYQGDLAQIEEVETNGLEVTV 357
>gi|258404824|ref|YP_003197566.1| lysine 2,3-aminomutase YodO family protein [Desulfohalobium
retbaense DSM 5692]
gi|257797051|gb|ACV67988.1| lysine 2,3-aminomutase YodO family protein [Desulfohalobium
retbaense DSM 5692]
Length = 440
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
I++TP+V L +G +P + D +I+ ++ Q+ + V +
Sbjct: 167 IRNTPQVRDVLLSGGDPFMLPDHQIDWLLGQLRSIEHVEVIRI 209
>gi|53713877|ref|YP_099869.1| putative transcriptional regulatory protein UpxY-like protein
[Bacteroides fragilis YCH46]
gi|60682085|ref|YP_212229.1| putative transcriptional regulatory protein [Bacteroides fragilis
NCTC 9343]
gi|253567131|ref|ZP_04844582.1| UpaY [Bacteroides sp. 3_2_5]
gi|255009543|ref|ZP_05281669.1| putative transcriptional regulatory protein [Bacteroides fragilis
3_1_12]
gi|265764220|ref|ZP_06092788.1| UpaY [Bacteroides sp. 2_1_16]
gi|313147318|ref|ZP_07809511.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|52216742|dbj|BAD49335.1| putative transcriptional regulatory protein UpxY homolog
[Bacteroides fragilis YCH46]
gi|60493519|emb|CAH08306.1| putative transcriptional regulatory protein [Bacteroides fragilis
NCTC 9343]
gi|251944255|gb|EES84764.1| UpaY [Bacteroides sp. 3_2_5]
gi|263256828|gb|EEZ28174.1| UpaY [Bacteroides sp. 2_1_16]
gi|301163555|emb|CBW23106.1| putative transcriptional regulatory protein [Bacteroides fragilis
638R]
gi|313136085|gb|EFR53445.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 172
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
M+ + W+ + + E +++ + E +P++ V+ K R+ E
Sbjct: 1 MSQQQEYWFAARTRKDQELTTRDALEK---------IGVEYFLPTQFVIRQLKYRRRRVE 51
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAV 114
+ + A T + I + V F ++ V D +++ M +
Sbjct: 52 VPVIRNLIFVHA--TKEFACAIANEYGVRLFYMRDFDTKSMLIVPDKQMKDFMFVMNLDP 109
Query: 115 QRPVSSVF-FEVGERVCVSDGPFASFNGI 142
+ + F VG +V V G F G
Sbjct: 110 AAVILNDDCFAVGTKVQVIKGDFCGVEGE 138
>gi|317494933|ref|ZP_07953342.1| NusG protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917075|gb|EFV38425.1| NusG protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 100
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
FP Y+ + + TI P +GF+ G + V I I
Sbjct: 1 MFPNYLFLSFDINKIHTSTISSIPGAVGFIRFGSDACTVPQKVISAI 47
>gi|75099912|sp|O80770|SPT52_ARATH RecName: Full=Putative transcription elongation factor SPT5 homolog
2
gi|3337352|gb|AAC27397.1| putative transcription elongation factor [Arabidopsis thaliana]
Length = 990
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+ ++V+ E++ + ++ G + + +
Sbjct: 169 PKLWLVKCAIGREREVAVCLMQKIVDRGSEFKI-----------------RSAIALDHLQ 211
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV I+A M V IK + + V E+ +++ ++
Sbjct: 212 NYVYIEADMEAHVKEAIKGMRNIY----ANQKILLVPIKEMTAVLS-------VESKAID 260
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + G + V +VD + RV V++
Sbjct: 261 LSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKL 295
>gi|315425500|dbj|BAJ47162.1| hypothetical protein HGMM_F42C08C15 [Candidatus Caldiarchaeum
subterraneum]
gi|315427493|dbj|BAJ49097.1| hypothetical protein HGMM_F32H09C36 [Candidatus Caldiarchaeum
subterraneum]
gi|315427511|dbj|BAJ49114.1| hypothetical protein HGMM_F43G04C15 [Candidatus Caldiarchaeum
subterraneum]
Length = 302
Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
GYV ++A + + +++ V P PV I + V++P+
Sbjct: 194 PALKGYVFVEATSKEVIADALQNVRHV-----KARPPMPVKLETIASHL------VEKPL 242
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
V G+ V + GP G V V++ + V +E+ P+ ++ + V +
Sbjct: 243 IEV-LAAGQMVEIVSGPLKGIVGKVIRVEKSRREVTLELKEAAFQLPISVSIDAVRPL 299
>gi|78187430|ref|YP_375473.1| hypothetical protein Plut_1576 [Chlorobium luteolum DSM 273]
gi|78167332|gb|ABB24430.1| L-lysine 2,3-aminomutase [Chlorobium luteolum DSM 273]
Length = 438
Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
++ +R PG I + I+ TP+V L +G +P ++D ++ I+ +++
Sbjct: 144 KRKVGDRDTIPGRSAI-----SEGIDYIRRTPQVRDVLLSGGDPFLLSDDYLDWILGELQ 198
Query: 112 AAVQRPVSSV 121
A V +
Sbjct: 199 AIEHVEVIRI 208
>gi|270296925|ref|ZP_06203124.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272912|gb|EFA18775.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 180
Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 22/150 (14%)
Query: 2 TPRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
WY V+ YS E E + +G+++ + P VRK R++
Sbjct: 6 EMHWYAVRVTYSR-ELFFKEYLDA----AGIENYI-----PMRYEYVVRKERRLRKLVPA 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQ 115
V +++ T + IK+ P I ++ E P + DS++ + Q
Sbjct: 56 VHNLVFVRS--TRERMDEIKNEPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQ 113
Query: 116 R----PVSSVFFEVGERVCVSDGPFASFNG 141
+ + G RV ++ G F G
Sbjct: 114 AVLYLEPTELNLSQGTRVRITGGIFEGVEG 143
>gi|330891951|gb|EGH24612.1| hypothetical protein PSYMO_25429 [Pseudomonas syringae pv. mori
str. 301020]
Length = 170
Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFFPGYVLIKAVMTDKV 75
+S+ + R ++ + P R R ++E+ R FPGY+L++
Sbjct: 13 VYQSLITSIERLDVE-----VYSPESITYRKRPDRPSSTEKVVRLFPGYLLLRFDPQVTH 67
Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
TI GF+ G + DS +E + R + + F
Sbjct: 68 TTTITALNGARGFVQFGGQACVMQDSTVEGLKAAALVRSNRALDCIEF 115
>gi|209550021|ref|YP_002281938.1| hypothetical protein Rleg2_2438 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209535777|gb|ACI55712.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 227
Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 5 WYIVQVYSNCEKKAVESIG--------GRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
WY ++ ++ + + L + + +P+ S+ +
Sbjct: 29 WYAIRAAPGT-QRMARHVEGAPIHRVGESIIERNLRNEGISVYMPAFWYESIHHRTRKVI 87
Query: 57 ERRF--FPGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
+RR GY + M + ++D VI FL + P + ++ I
Sbjct: 88 QRRLPLLVGYAFVNLENMNFE---QVRDVDGVICFLRSEFGPIRFSGDDLSVI 137
>gi|220921977|ref|YP_002497278.1| NGN domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219946583|gb|ACL56975.1| NGN domain protein [Methylobacterium nodulans ORS 2060]
Length = 214
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
RWY+V++ + E+K E GL+ I P+ V +GR R P
Sbjct: 38 RRWYVVRIDGSRERKIRE---------GLETAGFAICAPASSAVIEHRGRFREVRHRAVP 88
Query: 63 GYVLIKAV 70
GY+ +
Sbjct: 89 GYLFVGVD 96
>gi|242280776|ref|YP_002992905.1| lysine 2,3-aminomutase YodO family protein [Desulfovibrio
salexigens DSM 2638]
gi|242123670|gb|ACS81366.1| lysine 2,3-aminomutase YodO family protein [Desulfovibrio
salexigens DSM 2638]
Length = 437
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
I++TP+V L +G +P ++D +++ I+ ++ V +
Sbjct: 167 IRNTPQVRDVLLSGGDPFMLSDEKLDWILTKIGEIEHVEVVRI 209
>gi|301386541|ref|ZP_07234959.1| hypothetical protein PsyrptM_28094 [Pseudomonas syringae pv. tomato
Max13]
Length = 170
Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFFPGYVLIKAVMTDKV 75
+S+ + R ++ + P R R ++E+ R FPGY+L++
Sbjct: 13 VYQSLITSIERLDVE-----VYSPESITYRKRPDRPSSTEKVVRLFPGYLLLRFDPQVTH 67
Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
TI GF+ G + DS +E + R + + F
Sbjct: 68 TTTITALNGARGFVQFGGQACVMQDSTVEGLKAAALVRSNRALDCIEF 115
>gi|167045425|gb|ABZ10080.1| putative KOW motif protein [uncultured marine crenarchaeote
HF4000_APKG10F15]
Length = 129
Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYV+++A ++ I+ + G L +T +EI+ + + + V +
Sbjct: 24 LKGYVVVEAQDVSAMFDAIQGIRHIRGQLRGE-----LTYNEIDKYLIKKSTVSELAVEN 78
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V + GPF + +++EK V
Sbjct: 79 -------TVEIIAGPFKGMKATITRLEKEKEEATV 106
>gi|154492979|ref|ZP_02032605.1| hypothetical protein PARMER_02621 [Parabacteroides merdae ATCC
43184]
gi|154087284|gb|EDN86329.1| hypothetical protein PARMER_02621 [Parabacteroides merdae ATCC
43184]
Length = 178
Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 31/173 (17%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ C K + + L ++ +P + + ++KG+KV +
Sbjct: 7 AQWYVMRDLKRCNAK-------KPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQ 59
Query: 63 GYVLI---KAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
+ + + + V Y +++T + P V+D E++ + V +
Sbjct: 60 DLLFVYDSRQHLDSIVERTKTLQYRWLRNTFR---------EPMTVSDLEMDRFIQAVSS 110
Query: 113 AVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ P G ++ + G + G + + K + + V + G
Sbjct: 111 SDSPQYYLPEEITPQMCGRKIQIIGGSLNGYEGCLLKIRGSKIK-RLLVELKG 162
>gi|303243490|ref|ZP_07329832.1| ribosomal protein L24 [Methanothermococcus okinawensis IH1]
gi|302486051|gb|EFL48973.1| ribosomal protein L24 [Methanothermococcus okinawensis IH1]
Length = 120
Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + + +++ E + +++ G+ V + G F + G V VD + +++
Sbjct: 20 PHHLRNRLMSSTLSK-ELKEKYNKNALPVRKGDVVKIMRGNFKNIEGEVSKVDYKSYKIY 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|186505223|ref|NP_180968.2| structural constituent of ribosome / transcription elongation
regulator/ transcription initiation factor [Arabidopsis
thaliana]
gi|330253842|gb|AEC08936.1| Transcription elongation factor Spt5 [Arabidopsis thaliana]
Length = 989
Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+ ++V+ E++ + ++ G + + +
Sbjct: 169 PKLWLVKCAIGREREVAVCLMQKIVDRGSEFKI-----------------RSAIALDHLQ 211
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV I+A M V IK + + V E+ +++ ++
Sbjct: 212 NYVYIEADMEAHVKEAIKGMRNIY----ANQKILLVPIKEMTAVLS-------VESKAID 260
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + G + V +VD + RV V++
Sbjct: 261 LSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKL 295
>gi|154151802|ref|YP_001405420.1| ribosomal protein L24 [Candidatus Methanoregula boonei 6A8]
gi|154000354|gb|ABS56777.1| ribosomal protein L24 [Methanoregula boonei 6A8]
Length = 174
Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 30/153 (19%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ ++ S E+ ++I + D VT I +P+E GYV
Sbjct: 26 FAIKTTSKQERTVADNILKAIETKATDIKVTSIIVPNE-----------------LQGYV 68
Query: 66 LIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
L++ +++ ++ T +E+ H + + +PV S +
Sbjct: 69 LVETPEERNRIEQLVEMIAHARAVAKGQT-----TLAEVGHFL------IPKPVVS-GID 116
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G V + GPF +VK VD K + VE+
Sbjct: 117 EGTIVELIAGPFKGEKAVVKRVDSAKEEITVEL 149
>gi|53712384|ref|YP_098376.1| putative transcriptional regulator UpxY-like protein [Bacteroides
fragilis YCH46]
gi|265762576|ref|ZP_06091144.1| UpcY [Bacteroides sp. 2_1_16]
gi|5199109|gb|AAD40707.1|AF048749_3 UpcY [Bacteroides fragilis]
gi|5931967|gb|AAD56728.1|AF125164_1 UpcY [Bacteroides fragilis 638R]
gi|52215249|dbj|BAD47842.1| putative transcriptional regulator UpxY homolog [Bacteroides
fragilis YCH46]
gi|263255184|gb|EEZ26530.1| UpcY [Bacteroides sp. 2_1_16]
Length = 113
Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 79 IKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF-FEVGERVCVSDGP 135
++ T V FL + P+ + D+++ ++ + + + + G RV V+ G
Sbjct: 14 VRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILTGESIPKGTRVVVAKGD 73
Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
G + + K + V + +FG V + + V K
Sbjct: 74 LQGLRGELVRYN-NKYHILVRIDMFG-SAMVTIPASYVRK 111
>gi|322500301|emb|CBZ35379.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 700
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 26/156 (16%)
Query: 39 TIPSERVVSVRKGRKVNSERRFF-------------PGYVLIKAVMTDKVYHTIKDTPKV 85
+P E V + F YV + + +K
Sbjct: 306 VVPREDFVQKPFNKATKRLEPRFFTPRQAVGAREMENSYVWGDLHFDREG-YLLKTVS-- 362
Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-------FFEVGERVCVSDGPFAS 138
+ +G + E+ N V+R + + +G+ V V+ G +
Sbjct: 363 TRMVVSGAQMEQPSTEELARFYNDQREKVERALKAAEAAAQVPNISIGDSVRVTTGQLRN 422
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+V+NV + + + GRV P+++ QVE
Sbjct: 423 TIGVVENVFTNTNTAVLTCTMPGRVQPIKV---QVE 455
>gi|317479098|ref|ZP_07938239.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
gi|316904754|gb|EFV26567.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
Length = 180
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 22/150 (14%)
Query: 2 TPRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
WY V+ YS E + + G+++ + P VRK R++
Sbjct: 6 EMHWYAVRVTYSR-ELFFKDYLDA----EGIENYI-----PMRYEYVVRKERRLRKLVPA 55
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQ 115
V +++ T + IK+ P I ++ E P + DS++ + Q
Sbjct: 56 VHNLVFVRS--TRERMDEIKNKPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQ 113
Query: 116 R----PVSSVFFEVGERVCVSDGPFASFNG 141
+ + G RV ++ G F G
Sbjct: 114 AVLYLEPTELNLSQGTRVRITGGIFEGVEG 143
>gi|146091153|ref|XP_001466459.1| transcription elongation regulator-like protein [Leishmania
infantum JPCM5]
gi|134070821|emb|CAM69179.1| transcription elongation regulator-like protein [Leishmania
infantum JPCM5]
Length = 700
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 26/156 (16%)
Query: 39 TIPSERVVSVRKGRKVNSERRFF-------------PGYVLIKAVMTDKVYHTIKDTPKV 85
+P E V + F YV + + +K
Sbjct: 306 VVPREDFVQKPFNKATKRLEPRFFTPRQAVGAREMENSYVWGDLHFDREG-YLLKTVS-- 362
Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-------FFEVGERVCVSDGPFAS 138
+ +G + E+ N V+R + + +G+ V V+ G +
Sbjct: 363 TRMVVSGAQMEQPSTEELARFYNDQREKVERALKAAEAAAQVPNISIGDSVRVTTGQLRN 422
Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+V+NV + + + GRV P+++ QVE
Sbjct: 423 TIGVVENVFTNTNTAVLTCTMPGRVQPIKV---QVE 455
>gi|297623285|ref|YP_003704719.1| 50S ribosomal protein L24 [Truepera radiovictrix DSM 17093]
gi|297164465|gb|ADI14176.1| ribosomal protein L24 [Truepera radiovictrix DSM 17093]
Length = 111
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
A + + + + G+RV V G G++ EK+RV VE
Sbjct: 1 MATKPKRTRIRLKKGDRVRVIAGAHKGAEGVIIATLPEKNRVVVE 45
>gi|282880290|ref|ZP_06289004.1| transcription termination/antitermination factor NusG [Prevotella
timonensis CRIS 5C-B1]
gi|281305792|gb|EFA97838.1| transcription termination/antitermination factor NusG [Prevotella
timonensis CRIS 5C-B1]
Length = 204
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 18/146 (12%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFFPG 63
WY +++++ ++ ++ + + IP E V V RK R R
Sbjct: 33 WYALRLFTLKTQQVIDYLEEHH---------LDYFIPMEYVDVEDRKHRVQQKLRPVVRN 83
Query: 64 YVLIKAVMTDKVYHTIK-DTP---KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV- 118
+ IK M++ I + P VI + ++ +
Sbjct: 84 LIFIKRTMSELSIRKILTEAPFKGSVIRKSREDSQYYEIPSRQMFEFQAMCNPEIVMRQY 143
Query: 119 ---SSVFFEVGERVCVSDGPFASFNG 141
+ +VG V V GP +G
Sbjct: 144 LSEAQAKLKVGTPVYVKYGPLKGLSG 169
>gi|317133339|ref|YP_004092653.1| hypothetical protein Ethha_2426 [Ethanoligenens harbinense YUAN-3]
gi|315471318|gb|ADU27922.1| hypothetical protein Ethha_2426 [Ethanoligenens harbinense YUAN-3]
Length = 279
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 20/166 (12%)
Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
M+ WYI+ + + + L R + P+ + + E+
Sbjct: 1 MSKAWYII------ASRKQDELELLLDRKDI-DYFN----PTCLQARTTRQKLQLQEQNI 49
Query: 61 FPGYVLIKAVMTDKVYHTIKDT---PKVIGFLGTGENPS-PVTDSEIEHIMNQVEAAVQR 116
GYV ++ + Y+ + VI LG + V + E+ Q+ AAV
Sbjct: 50 MGGYVFAYLDLSQEYYYLKHNEMFYGNVIAILGMDNGIAGTVDEDEVVEW-RQLAAAVSV 108
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
P + F G+ + G + + + K +E+++ G+
Sbjct: 109 P-LRLRFTKGKYRITNKGLH---SARIVHYYRRKLSASIEIMVAGK 150
>gi|325181255|emb|CCA15669.1| transcription elongation factor SPT5 putative [Albugo laibachii
Nc14]
gi|325181812|emb|CCA16267.1| transcription elongation factor SPT5 putative [Albugo laibachii
Nc14]
Length = 1095
Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 92 GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE--- 148
G+ V+D EI+ + AA + + VGE V V +G A G VK++
Sbjct: 555 GDQVCQVSDQEIQRKLASSRAAALDQKHN-YVSVGEMVNVLEGSHAGHAGTVKHIHRCFL 613
Query: 149 --EKSRVHVEVVIF 160
+RV +F
Sbjct: 614 FLHNNRVMTNAGMF 627
Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
+G+ V + G + + GIV VDE +V VE+ + T V++ +V
Sbjct: 673 IGKTVKMKKGRWKGYIGIV--VDESDQKVKVEIHC--KATTVDVDRQEV 717
>gi|313159096|gb|EFR58471.1| transcription termination/antitermination factor NusG [Alistipes
sp. HGB5]
Length = 182
Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 66/185 (35%), Gaps = 20/185 (10%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
WY+++V E E + +++ V KG+ +
Sbjct: 8 AAEWYVLRVTYQRELSTKEYLDK----LNIENFVPV----RVVRRRNSKGQFFRACEVAV 59
Query: 62 PGYVLIKA--VMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
Y+ I++ + D++ + + V+ V + ++ + + ++ +
Sbjct: 60 HNYIFIRSTREVIDELKTYKLPMLRYVMHPQNGENQIMIVPEEQMRNFIAVAGNEDEQVL 119
Query: 119 ----SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV---ELAYN 171
V G++V ++ G F G++ V + + V V I G +T V +
Sbjct: 120 FMSPEEVALSKGDKVRITGGVFEGVEGLLMRVKNSRGK-RVVVKIDG-ITAVATASIPSA 177
Query: 172 QVEKI 176
VEKI
Sbjct: 178 LVEKI 182
>gi|332158012|ref|YP_004423291.1| 50S ribosomal protein L24P [Pyrococcus sp. NA2]
gi|331033475|gb|AEC51287.1| 50S ribosomal protein L24P [Pyrococcus sp. NA2]
Length = 121
Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E + V ++ VG++V + G F G V VD ++ R++
Sbjct: 19 PLHLRQKMMSAPLSR-ELREKYKVRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIY 77
Query: 155 VE 156
VE
Sbjct: 78 VE 79
>gi|319937052|ref|ZP_08011461.1| hypothetical protein HMPREF9488_02295 [Coprobacillus sp. 29_1]
gi|319807830|gb|EFW04415.1| hypothetical protein HMPREF9488_02295 [Coprobacillus sp. 29_1]
Length = 364
Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 69 AVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+ D ++ G +G G + ++ E++ ++ + ++ + G+
Sbjct: 168 MTLNDDTREAMERVYG--GLIGNNGGTVTTLSKEEMDKLLKSLPEGTSELRKNIVLQAGD 225
Query: 128 RV 129
V
Sbjct: 226 AV 227
>gi|253743835|gb|EET00128.1| Pyruvate kinase [Giardia intestinalis ATCC 50581]
Length = 652
Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 84 KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF----------EVGERVCVSD 133
+V F + + + SEI + ++ A + V + F E+G+ V +
Sbjct: 109 RVTRFRNSTNSITVQEGSEISIMFSR---AAECDVPNAVFVNESEIFTVIEIGDEVVFKN 165
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVV 158
GP V +V +K+ V V
Sbjct: 166 GP---LIAKVTHVSPDKTNVKAVVT 187
>gi|298207738|ref|YP_003715917.1| ribosomal protein L24 [Croceibacter atlanticus HTCC2559]
gi|83850376|gb|EAP88244.1| ribosomal protein L24 [Croceibacter atlanticus HTCC2559]
Length = 104
Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + +VG+ V V G G ++ V EK++ VE
Sbjct: 1 MATKLKIKVGDTVRVIAGASKGQEGKIQKVLVEKNKAIVE 40
>gi|209867662|gb|ACI90350.1| T54 protein-like protein [Philodina roseola]
Length = 384
Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+ + ++ + E G V + GP+A G ++ ++E+ SR+ V + I
Sbjct: 222 ESVNQLKKNLKRDGINEKDDLCMEKGAFVLIEKGPYADQYGTIECIEEDVSRLTVALAIS 281
Query: 161 G 161
G
Sbjct: 282 G 282
>gi|14520546|ref|NP_126021.1| 50S ribosomal protein L24P [Pyrococcus abyssi GE5]
gi|13124478|sp|Q9V1U7|RL24_PYRAB RecName: Full=50S ribosomal protein L24P
gi|5457762|emb|CAB49252.1| rpl24P LSU ribosomal protein L24P [Pyrococcus abyssi GE5]
Length = 121
Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E + + ++ VG++V + G F G V VD ++ R++
Sbjct: 19 PLHLRQKMMAAPLSK-ELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIY 77
Query: 155 VE 156
VE
Sbjct: 78 VE 79
>gi|284040610|ref|YP_003390540.1| ribosomal protein L24 [Spirosoma linguale DSM 74]
gi|283819903|gb|ADB41741.1| ribosomal protein L24 [Spirosoma linguale DSM 74]
Length = 118
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+E + P + G+ V V G G+V V EK R VE
Sbjct: 1 MEKKITLPKHKFHIKTGDTVVVIGGNSKGQRGVVTEVIVEKDRARVE 47
>gi|254457475|ref|ZP_05070903.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
gi|207086267|gb|EDZ63551.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
Length = 369
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 85 VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV--GERVCVSDGPFASFNGI 142
+ +G P+ + + I N + A ++ V F++ G++V V G F
Sbjct: 286 FVRVIGADGKPA-MPWAAKTDIKNTMIKANEKRVVKYDFKILKGDKVDVVLGWFLVNPKA 344
Query: 143 VKNVDEEKSRVHVEVVIF 160
VK + E +V E IF
Sbjct: 345 VKKLGLENEKVATEFNIF 362
>gi|320006731|gb|ADW01581.1| amino acid adenylation domain protein [Streptomyces flavogriseus ATCC
33331]
Length = 2645
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 22 IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKD 81
+ R+ + L+ + +P ER+V V + + S+ F V+I+ D
Sbjct: 1343 LLRRVRDTDLEAFAHQ-DVPFERIVEVLRPERSLSQNPLFQ--VMIQVQPADTT------ 1393
Query: 82 TPKVIGFLGTGENPSPVT 99
TP GF G P+PV+
Sbjct: 1394 TP---GFAGLKAEPAPVS 1408
>gi|320581144|gb|EFW95366.1| Transcription elongation factor spt5 [Pichia angusta DL-1]
Length = 933
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 29/150 (19%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
++V + EK+ V+ I R+ + + +R F GYV I
Sbjct: 187 IRVRNGLEKELVKQIYARMLNKRYTDVFSAF------------------QRDNFSGYVYI 228
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A D V I+ P + N V E ++ + V + G
Sbjct: 229 EARRLDAVNQIIQGLPGMY-----ANNKVLVPIEEYPDLLRPGRSNE------VQLQPGS 277
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + G + GIV N+ E V V++
Sbjct: 278 YVRIKVGKYKGDLGIVDNLAENDLEVRVKL 307
>gi|157960162|ref|YP_001500196.1| KAP P-loop domain-containing protein [Shewanella pealeana ATCC
700345]
gi|157845162|gb|ABV85661.1| KAP P-loop domain protein [Shewanella pealeana ATCC 700345]
Length = 571
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 18 AVESIGGR-LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK-------- 68
I +++L + E V+ + + + RR FP ++ +
Sbjct: 199 VKHLIDEHDAKAKSIENLKVHVKEWVEAVIGLDNAKHKDVNRRLFPAFIFVDELDRCRPS 258
Query: 69 --AVMTDKVYHTIKDTPKVIGFLGTG 92
M + + H I D P V+ +GT
Sbjct: 259 YAVEMLETIKH-IFDIPGVVFVVGTD 283
>gi|134112225|ref|XP_775088.1| hypothetical protein CNBE3620 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257740|gb|EAL20441.1| hypothetical protein CNBE3620 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1473
Score = 35.8 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 20/54 (37%)
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P V F VGE+V V V+EE + V + F T L +
Sbjct: 926 PDLKVDFPVGEKVLFLGDMHYGLAAQVSAVNEEAQTLSVILAYFEEETEETLRF 979
>gi|281421910|ref|ZP_06252909.1| hypothetical protein PREVCOP_05813 [Prevotella copri DSM 18205]
gi|281404026|gb|EFB34706.1| hypothetical protein PREVCOP_05813 [Prevotella copri DSM 18205]
Length = 135
Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV--SVRKGRKVNSERRFFP 62
WY+ V NCE + +SI L+R +H+ + IP +VV R ++ E+ F
Sbjct: 50 WYVAVVRVNCETRIADSIRINLNR---NHVWFDYWIPKVKVVYIDKRSNKRRVKEKLFLS 106
Query: 63 GYVLIKAVMT 72
++ +
Sbjct: 107 TFIFCNVSPS 116
>gi|254882595|ref|ZP_05255305.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319642064|ref|ZP_07996730.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
gi|254835388|gb|EET15697.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317386330|gb|EFV67243.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
3_1_40A]
Length = 182
Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
+W+ ++V E + + S IP V+ + K RKV
Sbjct: 8 QWFAMRVTYRRELDVKNLLDQQGVSS---------FIPMHYVIRMAKKRKVRELVPVVHN 58
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL--GTGENPSPVTDSEIEHIMNQVEAAVQR----P 117
+ I TD KD P + +GE V D ++ + +
Sbjct: 59 LIFIHITQTDMKELK-KDIPYLQYMTDSRSGEKII-VPDGQMRDFIAVAGTYDEHLLFFK 116
Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ G RV + G FA + GI V + R V + I G
Sbjct: 117 PEEINPAKGTRVRIIGGDFAGYEGIFIKVKGARDR-RVVICIQG 159
>gi|58267550|ref|XP_570931.1| Exonuclease II [Cryptococcus neoformans var. neoformans JEC21]
gi|57227165|gb|AAW43624.1| Exonuclease II, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 1457
Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 20/54 (37%)
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
P V F VGE+V V V+EE + V + F T L +
Sbjct: 926 PDLKVDFPVGEKVLFLGDMHYGLAAQVSAVNEEAQTLSVILAYFEEETEETLRF 979
>gi|145591807|ref|YP_001153809.1| transcription antitermination protein NusG [Pyrobaculum arsenaticum
DSM 13514]
gi|145283575|gb|ABP51157.1| LSU ribosomal protein L24A [Pyrobaculum arsenaticum DSM 13514]
Length = 153
Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 35/173 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y + V + E V ++ R+ S + V I +P E G +
Sbjct: 9 YTISVVARQEYNVVITLKMRVESSKIP--VYSIVVPPESF-----------------GVM 49
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++ V + V G + N E+ I+ V +V
Sbjct: 50 FVEGESLPAVNRAVYGVKHVKGVMRGVSN-----VEEVMKILKP-------ARPMVELDV 97
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVEKI 176
+ V + G V VD+EK V VE+ F P++L ++V+ +
Sbjct: 98 NDEVEIVADVLKGSRGRVTYVDKEKGIVRVELLDSAF--PMPLDLKISEVKLV 148
>gi|327311562|ref|YP_004338459.1| transcription antitermination protein NusG [Thermoproteus
uzoniensis 768-20]
gi|326948041|gb|AEA13147.1| transcription antitermination protein NusG [Thermoproteus
uzoniensis 768-20]
Length = 153
Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 31/169 (18%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y V V E + R V I +P E G +
Sbjct: 9 YSVSVVGRQEYNVTMVLKLRSESGKQP--VYSILVPKEPF-----------------GVI 49
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
I+A VY + V G L + + ++ V+ + +V
Sbjct: 50 FIEAESLAVVYRVVSGVKHVKGVLKGKTS------------LEEIVKYVEPKKPVIDIDV 97
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ V + G V +VD+EK V VE++ P++L ++V+
Sbjct: 98 NDEVEILADVLKGSRGRVISVDKEKGLVRVELLDSPFPMPLDLKASEVK 146
>gi|302877795|ref|YP_003846359.1| DNA-directed RNA polymerase, beta' subunit [Gallionella
capsiferriformans ES-2]
gi|302580584|gb|ADL54595.1| DNA-directed RNA polymerase, beta' subunit [Gallionella
capsiferriformans ES-2]
Length = 1415
Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV----LIK 68
E K + RL + ++ L +E IP E+ V V G+ V G +++
Sbjct: 1179 GKETKGKQ----RLVITDVEGLASEFLIPKEKHVLVHDGQMVTRGEMIVDGPADPHDILR 1234
Query: 69 AVMTDKVYHTIKD-TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFFEVG 126
+ ++ I D +V G + D IE I+ Q+ VQ + V F VG
Sbjct: 1235 LLGVAELARYITDEVQEVYRLQG-----VKINDKHIEVIVRQMLRRVQVKEVGDTRFIVG 1289
Query: 127 ERVCVSD 133
E+V +D
Sbjct: 1290 EQVERAD 1296
>gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus
nasoniae]
Length = 245
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P+P+ E I+ + A + VG+ + + DG + F G + +++ ++
Sbjct: 11 PNPL---ESGAIIQLSDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEANKKSVKIQ 67
Query: 155 V-EVVIFGRVTPVELAYNQV----EKI 176
+ I R +P++L QV EK+
Sbjct: 68 LGLATIANRESPLDLHLGQVISRGEKM 94
>gi|255320017|ref|ZP_05361213.1| inosine-5'-monophosphate dehydrogenase [Acinetobacter
radioresistens SK82]
gi|262380523|ref|ZP_06073677.1| inosine-5'-monophosphate dehydrogenase [Acinetobacter
radioresistens SH164]
gi|255302885|gb|EET82106.1| inosine-5'-monophosphate dehydrogenase [Acinetobacter
radioresistens SK82]
gi|262297969|gb|EEY85884.1| inosine-5'-monophosphate dehydrogenase [Acinetobacter
radioresistens SH164]
Length = 488
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 3/124 (2%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
L+ V+ I P ER+V+VR+G + + + I+ V+ H +K V F
Sbjct: 143 NLEQPVSNIMTPQERLVTVREGESKENIQALLQQH-RIEKVLVVDEQHALKGLITVTDFR 201
Query: 90 GTGENPSPVTDSEIE-HIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
P+ D + V + P E G V V D G+++ V
Sbjct: 202 KAELYPNSCKDDLGRLRVGAAVGTGAETPSRVEALVEAGVDVIVVDTAHGHSAGVIERVR 261
Query: 148 EEKS 151
K+
Sbjct: 262 WVKN 265
>gi|307354334|ref|YP_003895385.1| 50S ribosomal protein L24 [Methanoplanus petrolearius DSM 11571]
gi|307157567|gb|ADN36947.1| ribosomal protein L24 [Methanoplanus petrolearius DSM 11571]
Length = 121
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ S VG+ V V G F G+V VD EK V V
Sbjct: 38 EKYGKKSCRIVVGDTVKVQRGDFRGEEGVVDGVDTEKGTVIV 79
>gi|288926475|ref|ZP_06420395.1| putative UpdY [Prevotella buccae D17]
gi|315608651|ref|ZP_07883632.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|288336766|gb|EFC75132.1| putative UpdY [Prevotella buccae D17]
gi|315249690|gb|EFU29698.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 181
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 21/152 (13%)
Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSER 58
MT + WY V+++ +A I G IP G R
Sbjct: 4 MTDKPWYAVRLF-GMRARA---IEEAFKTEG-----FRTFIPMHYEDYEDANGHHKRRLR 54
Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPK----VIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
+ +++ +K + + +P+ VI T ++ + ++ E+ ++ +
Sbjct: 55 PVVSNLLFVESG-DEKKFKELVSSPRYKVSVIKPTPTSKSYAMISAKEMSEFISMCNPDM 113
Query: 115 QRPV-----SSVFFEVGERVCVSDGPFASFNG 141
+ + G+ V V GP +G
Sbjct: 114 EVERLIVSDEEARMKTGDHVVVHHGPLKGMHG 145
>gi|219685321|ref|ZP_03540140.1| MutS2 protein [Borrelia garinii Far04]
gi|219673094|gb|EED30114.1| MutS2 protein [Borrelia garinii Far04]
Length = 778
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 75/176 (42%), Gaps = 35/176 (19%)
Query: 7 IVQV---YSNCEKKAVESIGGRLSRSG--------LDHLVTEITIPSERVVSVRKGRKVN 55
+++ YS+ + + + + + + ++ + +I + E+ V +
Sbjct: 501 VIRANEIYSSQKTEVNKILERLVEKEKDLLSIKESMNKKLIQIEL-QEKEVENIYQNLLL 559
Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVI---------GFLGTGENPSPVTDSE--IE 104
E+ I+ + ++ +K++ KV+ G + +N + ++D E I+
Sbjct: 560 KEKN-------IETELLNEQNEFLKNSRKVLENLVREIKEGNVNVAKNKAFISDLEKNID 612
Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
+N+V + + +V F++G+RV + + ++ G + V K ++ V V F
Sbjct: 613 LKLNKVNSLNSKRNIAVDFKIGDRVRIVN---SNAKGKI--VGISKKKITVNVGAF 663
>gi|119719162|ref|YP_919657.1| 50S ribosomal protein L24P [Thermofilum pendens Hrk 5]
gi|218547077|sp|A1RWS4|RL24_THEPD RecName: Full=50S ribosomal protein L24P
gi|119524282|gb|ABL77654.1| LSU ribosomal protein L24P [Thermofilum pendens Hrk 5]
Length = 131
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 90 GTGENPSPVTDSEI---------EHIMNQVEAAVQRP--VSSVFFEVGERVCVSDGPFAS 138
GT P V E+ + I+ + A +Q+ + + G+RV + G F
Sbjct: 4 GTSSKPGKVRKREVYDAPLHIRSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKG 63
Query: 139 FNGIVKNVDEEKSRVHVE 156
G V +VD +K R+HVE
Sbjct: 64 HEGKVTSVDVKKGRIHVE 81
>gi|303390188|ref|XP_003073325.1| 60S ribosomal protein L26 [Encephalitozoon intestinalis ATCC 50506]
gi|303302471|gb|ADM11965.1| 60S ribosomal protein L26 [Encephalitozoon intestinalis ATCC 50506]
Length = 143
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + + + G+ V V G F G++ +++ E +V+VE
Sbjct: 38 ELRKEYGFRTFPLKSGDTVLVKGGKFDGKEGVITSINYEDYKVYVE 83
>gi|162448289|ref|YP_001610656.1| hypothetical protein sce0020 [Sorangium cellulosum 'So ce 56']
gi|161158871|emb|CAN90176.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 473
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
P E G RV V GPF G+V +D + V + + T +EL +E
Sbjct: 393 DPAKGGVLEKGSRVRVRRGPFGDKIGVVSELDG-RGGARVLLGLL--STRLELD--DLEL 447
Query: 176 IV 177
+V
Sbjct: 448 VV 449
>gi|326433915|gb|EGD79485.1| hypothetical protein PTSG_12984 [Salpingoeca sp. ATCC 50818]
Length = 1092
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 74 KVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
+ IK P + G L + P+ ++ E+ + P F VG+RV V
Sbjct: 412 ESGFLIKRIP-ISGVLTSAIKPTLEELSMFEMTEDAHVEMELPDEPSLQPAFAVGDRVEV 470
Query: 132 SDGPFASFNGIVKNVDEEKSRVHV 155
G + G + +++ +V +
Sbjct: 471 VGGDLKNLTGEILSINASSQQVEI 494
>gi|51980160|ref|YP_077227.1| hypothetical protein STSV1pORF34 [Sulfolobus virus STSV1]
gi|51890293|emb|CAH04217.1| hypothetical protein [Sulfolobus virus STSV1]
Length = 2308
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 92 GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
GE + +T +EIE I ++AA+++ ++ G V V G ++F + + E
Sbjct: 1347 GEKIASLT-AEIERIQQAIDAAIEKLKPAIRITKGGTVEVEGG--SNFAATIAKISNE-G 1402
Query: 152 RVHV 155
+V V
Sbjct: 1403 KVEV 1406
>gi|224011834|ref|XP_002294570.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969590|gb|EED87930.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 888
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 40 IPSERVVSVRKGRKVN----SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENP 95
+P + +++G + + R Y ++ V+ D G+ G+
Sbjct: 172 VPQKEETVMKRGSPSSLVDATVRVIGGKYEGVEGVVEDV---------NARGWFSIGDRK 222
Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFE---VGERVCVSDGPFASFNGIVKN 145
V D E+ A V+ V + +G V ++ GPF G +K
Sbjct: 223 FRVGDVEVISYPTTTTADGDATVAEVDAQDKYMGALVRITTGPFEGMEGTIKE 275
>gi|262165225|ref|ZP_06032962.1| transcriptional activator RfaH [Vibrio mimicus VM223]
gi|262024941|gb|EEY43609.1| transcriptional activator RfaH [Vibrio mimicus VM223]
Length = 69
Score = 35.5 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
M Q++ + + E G+ V V+ G FA I + D + R + V + + P+
Sbjct: 1 MKQLDCEQLKGSARQLPEKGQTVRVARGQFAGIEAIYQEPDGDT-RSIMLVKMISQQVPM 59
Query: 167 ELA 169
+
Sbjct: 60 SIE 62
>gi|118575540|ref|YP_875283.1| ribosomal protein L24A [Cenarchaeum symbiosum A]
gi|118194061|gb|ABK76979.1| ribosomal protein L24A [Cenarchaeum symbiosum A]
Length = 131
Score = 35.5 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
GYV+++A + Y T V G E++ +E + + +
Sbjct: 26 LKGYVVVEANDPNAAYQA---TDGVRHIKGQ-------LRGELD--FKDIEGYLVKKSTV 73
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA--YNQV 173
E + V ++ GPF + +D EK V ++ PV + Y QV
Sbjct: 74 TSLEKDQTVEITGGPFKGMKASITRIDHEKEEATVVLLDASYQLPVTVDANYLQV 128
>gi|68474556|ref|XP_718651.1| hypothetical protein CaO19.7494 [Candida albicans SC5314]
gi|46440430|gb|EAK99736.1| hypothetical protein CaO19.7494 [Candida albicans SC5314]
Length = 1704
Score = 35.5 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 48 VRKGRKVNSERRFFPGYV--LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP-VTDSEIE 104
++ ++ SER F G+V I +++YH + D P VI E P+P + E
Sbjct: 407 RKRTKRKISERDDFTGFVDDTITYDTNNELYHELYDQPIVI------EEPTPALNYPSFE 460
Query: 105 HIMNQVEAAV-QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ N E++ + + +E + P A G VDEE ++
Sbjct: 461 SVTNFSESSASEDEGEQMNYESDLDIFDVGPPQADITG----VDEETGKL 506
>gi|238879536|gb|EEQ43174.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1704
Score = 35.5 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 48 VRKGRKVNSERRFFPGYV--LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP-VTDSEIE 104
++ ++ SER F G+V I +++YH + D P VI E P+P + E
Sbjct: 407 RKRTKRKISERDDFTGFVDDTITYDTNNELYHELYDQPIVI------EEPTPALNYPSFE 460
Query: 105 HIMNQVEAAV-QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
+ N E++ + + +E + P A G VDEE ++
Sbjct: 461 SVTNFSESSASEDEGEQMNYESDLDIFDVGPPQADITG----VDEETGKL 506
>gi|57641465|ref|YP_183943.1| 50S ribosomal protein L24P [Thermococcus kodakarensis KOD1]
gi|73914096|sp|Q5JJF9|RL24_PYRKO RecName: Full=50S ribosomal protein L24P
gi|57159789|dbj|BAD85719.1| LSU ribosomal protein L24P [Thermococcus kodakarensis KOD1]
Length = 121
Score = 35.5 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + V ++ VG++V V G F G V VD + R+HVE
Sbjct: 34 ELREKYGVRNLPIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVE 79
>gi|302143191|emb|CBI20486.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 35.5 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
+ E P P+ + + + + +VG+ V + G G + +
Sbjct: 82 STEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIFRHN 141
Query: 151 SRVHV 155
S V V
Sbjct: 142 STVVV 146
>gi|308805314|ref|XP_003079969.1| probable transcription elongation factor (ISS) [Ostreococcus tauri]
gi|116058426|emb|CAL53615.1| probable transcription elongation factor (ISS) [Ostreococcus tauri]
Length = 926
Score = 35.5 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
AV + + F G++V + +G + G+V+ VD + RV V
Sbjct: 307 KAVGARKTDLKFMTGDQVLIVEGDLRNLEGVVERVDPD-GRVVVM 350
>gi|13124815|sp|O59429|RL24_PYRHO RecName: Full=50S ribosomal protein L24P
Length = 121
Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + V ++ VG++V + G F + G V VD ++ R++VE
Sbjct: 34 ELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVE 79
>gi|71411747|ref|XP_808109.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70872245|gb|EAN86258.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 1125
Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 14/146 (9%)
Query: 13 NCEKKAVES-IGGRLSRS-----GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
E E+ + + GL ++ E + + ++++ + +
Sbjct: 346 GREADVKENELAEEIQHEHDVLVGLGMREAQVL--DEEKEEMLRIKEISQREKLLRLGLG 403
Query: 67 I-KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
+ + D H ++ P+ +G +P + + + V+ + E
Sbjct: 404 VQEIENDDDTNHALR--PEAASKVGASLTIAP--PHGLANWFSAVDMRCEPGAVLALLEE 459
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKS 151
E G FA+ + IV+ +
Sbjct: 460 -EEWVSLGGFFANVDKIVQEFKAARQ 484
>gi|169831552|ref|YP_001717534.1| RecD/TraA family helicase [Candidatus Desulforudis audaxviator
MP104C]
gi|169638396|gb|ACA59902.1| helicase, RecD/TraA family [Candidatus Desulforudis audaxviator
MP104C]
Length = 719
Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 76 YHTIKD----TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
YH I+D TP G +G ++E+++++N + V F G++V
Sbjct: 537 YHPIRDIQVLTPMYRGLVGAAN-----LNAELQNLLNPGKDGV--VRGHRMFRTGDKVMQ 589
Query: 132 S-----DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
F G + V E+ ++ V+ GR V +++++++V
Sbjct: 590 VVNNYQKEVFNGDIGRITAVHLEQQQLKVDFD--GRA--VSYEFSELDELV 636
>gi|240104048|ref|YP_002960357.1| 50S ribosomal protein L24P [Thermococcus gammatolerans EJ3]
gi|239911602|gb|ACS34493.1| LSU ribosomal protein L24P (rpl24P) [Thermococcus gammatolerans
EJ3]
Length = 121
Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E + V ++ G++V V G F G V VD ++ R+H
Sbjct: 19 PLHLRQKIMAAPLSK-ELREKYGVRNLPIREGDKVRVMRGDFKGKEGKVLEVDLKRYRIH 77
Query: 155 VE 156
VE
Sbjct: 78 VE 79
>gi|255038100|ref|YP_003088721.1| 50S ribosomal protein L24 [Dyadobacter fermentans DSM 18053]
gi|254950856|gb|ACT95556.1| ribosomal protein L24 [Dyadobacter fermentans DSM 18053]
Length = 113
Score = 35.5 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
+E+ ++ + + G+ V V G G++ V EK R VE V +
Sbjct: 1 MESTNKKAPAKLHVRKGDTVKVISGNAKGETGVITKVLVEKQRATVEGVNM 51
>gi|226939180|ref|YP_002794251.1| DNA-directed RNA polymerase subunit beta' [Laribacter hongkongensis
HLHK9]
gi|226714104|gb|ACO73242.1| RpoC [Laribacter hongkongensis HLHK9]
Length = 1401
Score = 35.5 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV----LIKAVMTDKV-YH 77
RL + L+ + E IP E+ V V G+ VN G V +++ + + +
Sbjct: 1178 KQRLVITDLEGIAHETLIPKEKHVLVHDGQVVNRGELIVDGPVDPHDILRLQGIEALSRY 1237
Query: 78 TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFFEVGERV 129
+++ +V G + D IE I+ Q+ + + F VGE+V
Sbjct: 1238 IVQEVQEVYRLQG-----VKINDKHIEVIIRQMLRRVIINDAGNTDFIVGEQV 1285
>gi|169839652|ref|ZP_02872840.1| hypothetical protein cdivTM_21434 [candidate division TM7
single-cell isolate TM7a]
Length = 64
Score = 35.5 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
I ++ + P + F+VGE V V G F G +
Sbjct: 10 KIGIDIDGEEKAPRLDINFKVGEVVTVKGGSFDGQQGEISE 50
>gi|296423718|ref|XP_002841400.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637638|emb|CAZ85591.1| unnamed protein product [Tuber melanosporum]
Length = 1054
Score = 35.1 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 25/148 (16%)
Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
V+ E++ V SI + + P + ++ +G PGY+ +
Sbjct: 189 VKCKPGKEREIVFSILRK------QEELANTKAPLQITSALERG-------NTMPGYIYV 235
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A V H ++ V F+ V E+ ++ ++ G
Sbjct: 236 EAKKQADVMHALQ---GVS-FVYPMTKMILVPIKEMPDLLFVMK--------KAEITPGT 283
Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHV 155
V G + V+NV V +
Sbjct: 284 WVRFKRGKYQGDLAQVENVLASGLEVKI 311
>gi|14591523|ref|NP_143604.1| 50S ribosomal protein L24P [Pyrococcus horikoshii OT3]
gi|3258199|dbj|BAA30882.1| 124aa long hypothetical 50S ribosomal protein L24 [Pyrococcus
horikoshii OT3]
Length = 124
Score = 35.1 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + V ++ VG++V + G F + G V VD ++ R++VE
Sbjct: 37 ELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVE 82
>gi|329964860|ref|ZP_08301868.1| transcription termination/antitermination factor NusG
[Bacteroides fluxus YIT 12057]
gi|328524501|gb|EGF51569.1| transcription termination/antitermination factor NusG
[Bacteroides fluxus YIT 12057]
Length = 177
Score = 35.1 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
W+ + E S+ LD + +P+ V++ K R+ SE
Sbjct: 6 KYWFAARTRDKQEFAIRNSLEKLKVEENLD---IDCYLPTRSVITQLKYRRKRSEVPVIR 62
Query: 63 GYVLIKAVMTDKVYHTIKDTPKV 85
+ ++A T + + + V
Sbjct: 63 NLIFVRA--TKQTACDLSNVYGV 83
>gi|298675983|ref|YP_003727733.1| NusG antitermination factor [Methanohalobium evestigatum Z-7303]
gi|298288971|gb|ADI74937.1| NusG antitermination factor [Methanohalobium evestigatum Z-7303]
Length = 157
Score = 35.1 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 31/152 (20%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
++V+ +N E+ + + LD + + P E GYV
Sbjct: 12 FVVKTTANQERSVANMVAQVTRKDKLD--IRAVIAPDE-----------------LKGYV 52
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
L++A+ + V I+ P + + EI H + +
Sbjct: 53 LVEALDSATVEQAIQRVPHAKALVKGQS-----SIDEITHFLTP-------KPTVTGITE 100
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G + ++ GPF VK VDE + VE+
Sbjct: 101 GTIIEITSGPFKGEKARVKRVDEGHEEITVEL 132
>gi|297823203|ref|XP_002879484.1| KOW domain-containing transcription factor family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297325323|gb|EFH55743.1| KOW domain-containing transcription factor family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 978
Score = 35.1 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
P+ ++V+ E++ + ++ G + + +
Sbjct: 155 PKLWLVKCAIGREREVAVCLMQKIIDRGSEFKI-----------------RSAIALDHLQ 197
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YV I+A M V IK + + V E+ +++ ++
Sbjct: 198 NYVYIEADMEAHVKEAIKGMRNIY----ANQKILLVPIKEMTDVLS-------VESKAID 246
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
V + G + V +VD + RV V++
Sbjct: 247 LSRDTWVRMKLGIYKGDLAQVVDVDNVRKRVTVKL 281
>gi|254437257|ref|ZP_05050751.1| D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain,
putative [Octadecabacter antarcticus 307]
gi|198252703|gb|EDY77017.1| D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain,
putative [Octadecabacter antarcticus 307]
Length = 343
Score = 35.1 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 17 KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG--YVLIKAVMTDK 74
K ++I R G++ + + +P+E V+ + G ++ S+ Y+L++A MT +
Sbjct: 165 KIGQAIATRAQAFGVNIIAFDPFLPAE--VATQHGAELVSKEDLLARSDYILMQAPMTPE 222
Query: 75 VYHTIKDT------PKVIGFLGTGENPS 96
H + D P VI + TG P+
Sbjct: 223 TRHFLSDAEFAAMKPGVI-LVNTGRGPT 249
>gi|325989369|ref|YP_004249068.1| DnaJ domain-containing protein [Mycoplasma suis KI3806]
gi|323574454|emb|CBZ40104.1| DnaJ domain-containing protein [Mycoplasma suis]
Length = 341
Score = 35.1 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
RWY+ + Y E K +ES+ ++ + + V EI E V+
Sbjct: 76 RWYVARSYIANEDKLIESLWDKIRQHKMVDSVKEIVSFKETVI 118
>gi|325972876|ref|YP_004249940.1| transcription antitermination protein, NusG [Mycoplasma suis str.
Illinois]
gi|323651478|gb|ADX97560.1| putative transcription antitermination protein, NusG [Mycoplasma
suis str. Illinois]
Length = 341
Score = 35.1 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
RWY+ + Y E K +ES+ ++ + + V EI E V+
Sbjct: 76 RWYVARSYIANEDKLIESLWDKIRQHKMVDSVKEIVSFKETVI 118
>gi|330038743|ref|XP_003239687.1| 60S ribosomal protein L26 [Cryptomonas paramecium]
gi|327206611|gb|AEA38789.1| 60S ribosomal protein L26 [Cryptomonas paramecium]
Length = 87
Score = 35.1 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ S+ +VG+RV ++ G F +G + + +++ V++E
Sbjct: 26 KYNTKSILIKVGDRVRITKGSFKGHSGKIIEICTKRNFVYIE 67
>gi|307181001|gb|EFN68775.1| Brix domain-containing protein 1-like protein [Camponotus
floridanus]
Length = 202
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH-VEVVIFGRVT 164
+++ +E ++ F+V E+V + P FNG V + E R+ + V +F R
Sbjct: 65 LLDMIEFGIENYKGLKDFKV-EKVSLGIKPLLIFNGEVFESNYEYRRIKNLLVDMFQREV 123
>gi|305667888|ref|YP_003864362.1| conjugal transfer protein, transcription antitermination factor
[Escherichia coli]
gi|304655637|emb|CBM42307.1| conjugal transfer protein, transcription antitermination factor
[Escherichia coli]
Length = 213
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 90 KVRRTDKVCGYRRHIHAVFPGYFFLKADPESHSFTHLRRHSAFLDFVKMAGEIKTVREDI 149
Query: 103 IEHIMN 108
++ +M
Sbjct: 150 VQSLMK 155
>gi|300940190|ref|ZP_07154792.1| transcription termination factor NusG [Escherichia coli MS 21-1]
gi|300454987|gb|EFK18480.1| transcription termination factor NusG [Escherichia coli MS 21-1]
Length = 202
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 79 KVRRTDKVCGYRRHIHAVFPGYFFLKADPESHSFTHLRRHSAFLDFVKMAGEIKTVREDI 138
Query: 103 IEHIMN 108
++ +M
Sbjct: 139 VQSLMK 144
>gi|300993748|ref|ZP_07180525.1| transcription termination factor NusG [Escherichia coli MS 200-1]
gi|309783671|ref|ZP_07678321.1| transcription termination factor nusG family protein [Shigella
dysenteriae 1617]
gi|300305054|gb|EFJ59574.1| transcription termination factor NusG [Escherichia coli MS 200-1]
gi|308928567|gb|EFP74024.1| transcription termination factor nusG family protein [Shigella
dysenteriae 1617]
gi|323186614|gb|EFZ71948.1| transcription termination factor nusG family protein [Escherichia
coli 1357]
Length = 168
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 45 KVRRTDKVCGYRRHIHAVFPGYFFLKADPESHSFTHLRRHSAFLDFVKMAGEIKTVREDI 104
Query: 103 IEHIMN 108
++ +M
Sbjct: 105 VQSLMK 110
>gi|218711173|ref|YP_002418793.1| conjugal transfer protein B, putative Transcription antitermination
factor [Escherichia coli ED1a]
gi|218349956|emb|CAQ87367.1| conjugal transfer protein B, putative Transcription antitermination
factor [Escherichia coli ED1a]
Length = 213
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 90 KVRRTDKVCGYRRHIHAVFPGYFFLKADPESHSFTHLRRHSAFLDFVKMAGEIKTVREDI 149
Query: 103 IEHIMN 108
++ +M
Sbjct: 150 VQSLMK 155
>gi|168770534|ref|ZP_02795541.1| TraB [Escherichia coli O157:H7 str. EC4486]
gi|226201048|ref|YP_002756660.1| transcription antitermination factor [Escherichia coli]
gi|317054596|ref|YP_004119663.1| TraB [Escherichia coli]
gi|189360520|gb|EDU78939.1| TraB [Escherichia coli O157:H7 str. EC4486]
gi|219881677|gb|ACL52047.1| transcription antitermination factor [Escherichia coli]
gi|284433127|gb|ADB84866.1| TraB [Escherichia coli]
Length = 213
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 90 KVRRTDKVCGYRRHIHAVFPGYFFLKADPESHSFTHLRRHSAFLDFVKMAGEIKTVREDI 149
Query: 103 IEHIMN 108
++ +M
Sbjct: 150 VQSLMK 155
>gi|15678045|ref|NP_275159.1| 50S ribosomal protein L24P [Methanothermobacter thermautotrophicus
str. Delta H]
gi|3122709|sp|O26122|RL24_METTH RecName: Full=50S ribosomal protein L24P
gi|2621042|gb|AAB84515.1| ribosomal protein L26 (E.coli ) [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 117
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + S+ G++V + G F G V+ VD ++ RV+VE
Sbjct: 31 ELREEYGRRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVE 76
>gi|193213047|ref|YP_001999000.1| lysine 2,3-aminomutase YodO family protein [Chlorobaculum parvum
NCIB 8327]
gi|193086524|gb|ACF11800.1| lysine 2,3-aminomutase YodO family protein [Chlorobaculum parvum
NCIB 8327]
Length = 440
Score = 35.1 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
++ + P I+A + I++TP+V L +G +P ++D ++ I+ ++
Sbjct: 144 KRKVGDEDTIPNRAAIQAGID-----YIRNTPQVRDVLLSGGDPFLLSDEMLDWILTELR 198
Query: 112 AAVQRPVSSV 121
A + V
Sbjct: 199 AIEHVEIIRV 208
>gi|301094845|ref|XP_002896526.1| 5'-3' exoribonuclease 1, putative [Phytophthora infestans T30-4]
gi|262109022|gb|EEY67074.1| 5'-3' exoribonuclease 1, putative [Phytophthora infestans T30-4]
Length = 1480
Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P+ +T + + + + E P++ F V + ++ G + IV++ DEE+ V
Sbjct: 875 PAQLTVRDRKLLDARFEETETLPLNE-RFPVDSKALITRGQWLGCTAIVRSQDEEQHTVT 933
Query: 155 VEVVIFGRVTPVELAYNQVEKI 176
V + + P Y V+KI
Sbjct: 934 VHLNTIDQEPP--FGYVIVQKI 953
>gi|196006151|ref|XP_002112942.1| hypothetical protein TRIADDRAFT_56584 [Trichoplax adhaerens]
gi|190584983|gb|EDV25052.1| hypothetical protein TRIADDRAFT_56584 [Trichoplax adhaerens]
Length = 501
Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 91 TGENPSPVTD-----SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
P + E E + AA S+ F G V V GP A G V+
Sbjct: 209 NKNKPDKIRKPGEKYEEPERTSDVCFAAKMVTTISLGFARGVHVMVVAGPHADLYGKVEG 268
Query: 146 VDEEKSRVHVEVVI 159
+D + R+ V + I
Sbjct: 269 IDGDNGRIFVALAI 282
>gi|313673871|ref|YP_004051982.1| crispr-associated protein cas5 [Calditerrivibrio nitroreducens DSM
19672]
gi|312940627|gb|ADR19819.1| CRISPR-associated protein Cas5 [Calditerrivibrio nitroreducens DSM
19672]
Length = 224
Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+I+ + SN E K E I ++ L+ +I I + + SE + Y+
Sbjct: 95 HIIHIESNFENKINECIDKATRLGRMEDLINKIEIIT--SSEKKSNSCDLSEIKNLNYYI 152
Query: 66 LI 67
+
Sbjct: 153 YV 154
>gi|149248452|ref|XP_001528613.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448567|gb|EDK42955.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1058
Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 25/140 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
Y ++ EK+ V + + + +I +R F GYV
Sbjct: 276 YAIRCSPGKEKEIVRKLYEKKRTLERQNTPLDIL--------------TVFQRDSFRGYV 321
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
I+A D + ++ + T + V+ E ++ QV++ S V +
Sbjct: 322 YIEAKRPDAIDKALQGMVNIY----TRDKLL-VSVKEYPDLLKQVKS------SDVELKP 370
Query: 126 GERVCVSDGPFASFNGIVKN 145
G V ++ G + IV N
Sbjct: 371 GVYVRIARGKYKGDLAIVDN 390
>gi|295668190|ref|XP_002794644.1| transcription elongation factor spt5 [Paracoccidioides brasiliensis
Pb01]
gi|226286060|gb|EEH41626.1| transcription elongation factor spt5 [Paracoccidioides brasiliensis
Pb01]
Length = 1105
Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 26/152 (17%)
Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
+ V+ E++ V +I R+ + + P + + +G GY+
Sbjct: 245 WAVKCRPGKEREVVFNIMKRI-----EDRPPDSRRPIRIMSAFERGG-------TMSGYI 292
Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
++A V + D V T ++ E+ ++ R S
Sbjct: 293 YVEARRQADVIDALDDMSNVY----TKSKMILISVKEMPDLL--------RVTKSEELVP 340
Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
G V + G + +++V E + + V V
Sbjct: 341 GGWVRIKRGKYQGDLAQLEDV--ETNGLDVTV 370
>gi|260763819|ref|YP_003237858.1| transfer protein B [Escherichia coli O26:H11 str. 11368]
gi|257757244|dbj|BAI28745.1| transfer protein B [Escherichia coli O26:H11 str. 11368]
gi|323157077|gb|EFZ43204.1| transcription termination factor nusG family protein [Escherichia
coli EPECa14]
Length = 168
Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 45 KVRRTDKVCGYRRHIHAVFPGYFFLKADPERHSFTHLRRHSAFLNFVKMAGEIKTVREDI 104
Query: 103 IEHIMN 108
++ +M
Sbjct: 105 VQSLMK 110
>gi|226200993|ref|YP_002756602.1| transcription antitermination factor [Escherichia coli]
gi|284000158|ref|YP_003377845.1| transcription antitermination factor [Escherichia coli O26:H-]
gi|219881622|gb|ACL51992.1| transcription antitermination factor [Escherichia coli]
gi|283445098|gb|ADB20442.1| transcription antitermination factor [Escherichia coli O26:H-]
gi|325699467|gb|ADZ45198.1| transcription antitermination factor [Escherichia coli]
Length = 213
Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 47 SVRKGRKVNSERR----FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
VR+ KV RR FPGY +KA + ++ + F+ V +
Sbjct: 90 KVRRTDKVCGYRRHIHAVFPGYFFLKADPERHSFTHLRRHSAFLNFVKMAGEIKTVREDI 149
Query: 103 IEHIMN 108
++ +M
Sbjct: 150 VQSLMK 155
>gi|220936061|ref|YP_002514960.1| putative CheA signal transduction histidine kinase [Thioalkalivibrio
sp. HL-EbGR7]
gi|219997371|gb|ACL73973.1| putative CheA signal transduction histidine kinase [Thioalkalivibrio
sp. HL-EbGR7]
Length = 1974
Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 17 KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVY 76
+AV ++ G + + + E+ P ER V R + PG+ +
Sbjct: 1019 RAVHTLNGAARTAEVPE-IFEVCAPCERYVKARADTEAFVPGAALPGF-----------W 1066
Query: 77 HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
I+ VI LG GE+P P + E + ++ + R
Sbjct: 1067 SLIEHVSGVIEALGRGEDPLPSGERLAEDMQAMLDEELAR 1106
>gi|237710841|ref|ZP_04541322.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237725680|ref|ZP_04556161.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|298385281|ref|ZP_06994840.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|317474064|ref|ZP_07933343.1| hypothetical protein HMPREF1016_00322 [Bacteroides eggerthii
1_2_48FAA]
gi|229435488|gb|EEO45565.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229455563|gb|EEO61284.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|298262425|gb|EFI05290.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|316909906|gb|EFV31581.1| hypothetical protein HMPREF1016_00322 [Bacteroides eggerthii
1_2_48FAA]
Length = 183
Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV-IGF- 88
++L + P + V G++V+ E F + +K + + ++ TPK+ +
Sbjct: 32 FENLKVQCFTPMVHRLVVVGGKRVDQEVPFMQDLLFVK-DTREHLDAIVESTPKLQYRYK 90
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQ----RPVSSVFFEVGERVCVSDGPFASFNGI-V 143
LG P V +++E + VEA+ P ++ + G + G V
Sbjct: 91 LGVQHTPIIVPVADMERFIKAVEASDNPKFYSPDEVTPEMRNRKIRIIGGQLDGYTGTLV 150
Query: 144 KNVDEEKSRVHVEV-VIFGRVTPVELAYNQV 173
+ R+ VE+ + VE Y Q+
Sbjct: 151 TTRGSKTKRLLVELPTLLAASIEVEAEYIQL 181
>gi|255724010|ref|XP_002546934.1| hypothetical protein CTRG_01240 [Candida tropicalis MYA-3404]
gi|240134825|gb|EER34379.1| hypothetical protein CTRG_01240 [Candida tropicalis MYA-3404]
Length = 980
Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 31/143 (21%)
Query: 6 YIVQVYSNCEKKAVESI---GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
Y ++V EK+ V + L R G + + +R F
Sbjct: 197 YAIRVSPGKEKELVRKLYKKKRTLERQGTPLDILTVF-----------------QRDAFT 239
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GY+ I+A D + ++ V + D + + + Q + V
Sbjct: 240 GYIYIEAKRPDAIDRALEGMVNVF-----------MRDKLLVPVKEYPDLLKQVKTTDVE 288
Query: 123 FEVGERVCVSDGPFASFNGIVKN 145
G V + G + IV N
Sbjct: 289 VVPGIYVRIKRGAYKGDLAIVDN 311
>gi|167540091|ref|XP_001733557.1| suppressor of ty [Entamoeba dispar SAW760]
gi|165893855|gb|EDR21974.1| suppressor of ty, putative [Entamoeba dispar SAW760]
Length = 727
Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVD-------EEKSRVHVEVV 158
+ S++F VG+RV V+DG +A+ GI++ + +K + + V
Sbjct: 370 KEDVSIYFNVGDRVKVTDGMYANETGIIEAIKGDEVFVFTDKKKASICVS 419
>gi|156103269|ref|XP_001617327.1| 50S ribosomal protein L24 [Plasmodium vivax SaI-1]
gi|148806201|gb|EDL47600.1| 50S ribosomal protein L24, putative [Plasmodium vivax]
Length = 244
Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
+ +VG+ V V GP+ GIV N++ +++ V V
Sbjct: 54 LNIKVGDLVKVLYGPYKDKEGIVLNINTKRNTVIV 88
>gi|260906397|ref|ZP_05914719.1| hypothetical protein BlinB_13798 [Brevibacterium linens BL2]
Length = 56
Score = 34.7 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
F G+ V ++ P G V+ DEE+ + V V
Sbjct: 3 DFNTGDTVTITGEPMNGNTGKVEVFDEERGKYLVRVN 39
>gi|108763214|ref|YP_628693.1| acyl-CoA dehydrogenase [Myxococcus xanthus DK 1622]
gi|108467094|gb|ABF92279.1| acyl-CoA dehydrogenase [Myxococcus xanthus DK 1622]
Length = 604
Score = 34.7 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
+D V+ + V F+ G+ S ++++ I ++ + E A F V +
Sbjct: 187 SDDVW----EIEGVKRFITNGD--SDMSENIIHMVLARPEGAAPGTKGLSLFVVPKYWVN 240
Query: 132 SDGPFASFNGIVKNVDEEKSRVHVEVVI---FGRVTP 165
DG NG+V E+K + V FG P
Sbjct: 241 EDGSLGEANGVVCTKLEKKMGLKGSVTCEMTFGDGKP 277
>gi|254882519|ref|ZP_05255229.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254835312|gb|EET15621.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 252
Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
WY+++ Y N E A + + + E IP ++V+ KG+KV
Sbjct: 28 WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKV 69
>gi|304314265|ref|YP_003849412.1| 50S ribosomal protein L24P [Methanothermobacter marburgensis str.
Marburg]
gi|302587724|gb|ADL58099.1| 50S ribosomal protein L24P [Methanothermobacter marburgensis str.
Marburg]
Length = 117
Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + S+ G++V V G F G V+ VD ++ RV+VE
Sbjct: 31 ELREEYGRRSLPVRKGDKVEVLRGDFKGHEGKVEKVDLKRYRVYVE 76
>gi|242398291|ref|YP_002993715.1| 50S ribosomal protein L24P [Thermococcus sibiricus MM 739]
gi|242264684|gb|ACS89366.1| 50S ribosomal protein L24P [Thermococcus sibiricus MM 739]
Length = 120
Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
VE + + S+ G++V V G F G V VD ++ RVHVE
Sbjct: 33 VELRQKYGIRSLPIRSGDKVKVLRGDFKGHEGKVVEVDLKRYRVHVE 79
>gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease DCL2; Includes: RecName:
Full=ATP-dependent helicase DCL2
Length = 1485
Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 26 LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
+ G D + + +P + + + +G P D + +K PK
Sbjct: 874 IRSYGRDPYIYKSWVPVKPPLELVRGYWKAKPDEEEP--------PADAPWVVVKRLPKN 925
Query: 86 IGFLGTGENPSPVTDS 101
GF+ P +
Sbjct: 926 CGFVKNSRIPIELPKE 941
>gi|297201750|ref|ZP_06919147.1| adenylate kinase [Streptomyces sviceus ATCC 29083]
gi|197710875|gb|EDY54909.1| adenylate kinase [Streptomyces sviceus ATCC 29083]
Length = 220
Score = 34.7 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 19 VESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKV 54
ES+ L G+ V ++ +P E VV GR++
Sbjct: 93 AESLDEMLQHEGMKLDAVLDLEVPEEEVVKRIAGRRI 129
>gi|86141580|ref|ZP_01060126.1| DNA mismatch repair protein MutS [Leeuwenhoekiella blandensis
MED217]
gi|85832139|gb|EAQ50594.1| DNA mismatch repair protein MutS [Leeuwenhoekiella blandensis
MED217]
Length = 725
Score = 34.7 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE-LAY 170
V++ + +VG++V + DG G + + EK + V+ +F VE L +
Sbjct: 666 VEKEKPKITLQVGDQVRLPDG---RAVGSIDKI--EKGKATVDYGMFTTQVDVETLEF 718
>gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum]
Length = 307
Score = 34.7 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 49 RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-----DSEI 103
RKG + + ++ ++ + ++ ++ V LG+G + +T D EI
Sbjct: 203 RKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFHSREDREI 262
Query: 104 EHIMNQ 109
+H+ +
Sbjct: 263 KHLFRE 268
>gi|66806799|ref|XP_637122.1| transcription initiation factor Spt5 [Dictyostelium discoideum AX4]
gi|60465555|gb|EAL63639.1| transcription initiation factor Spt5 [Dictyostelium discoideum AX4]
Length = 1131
Score = 34.7 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
GYV ++A V IK + + +P+ D + + +V
Sbjct: 175 GYVYVEAEREVHVRQAIK---GMTSLVSFTPVITPLKD---------IIEVISANKKNVD 222
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
+ G V + G + + G + + D KSRV V++
Sbjct: 223 LQKGGWVRIRLGKYKADIGQIISYDPSKSRVTVKL 257
>gi|254172791|ref|ZP_04879465.1| ribosomal protein L24 [Thermococcus sp. AM4]
gi|214032947|gb|EEB73775.1| ribosomal protein L24 [Thermococcus sp. AM4]
Length = 121
Score = 34.7 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E + V ++ G++V V G F G V VD ++ R+H
Sbjct: 19 PLHLRQKIMSATLSE-ELREKYGVRNLPIREGDKVKVMRGDFKGKEGKVVEVDLKRYRIH 77
Query: 155 VE 156
VE
Sbjct: 78 VE 79
>gi|303285722|ref|XP_003062151.1| transcription elongation-nucleosome displacement protein Spt5
[Micromonas pusilla CCMP1545]
gi|226456562|gb|EEH53863.1| transcription elongation-nucleosome displacement protein Spt5
[Micromonas pusilla CCMP1545]
Length = 1290
Score = 34.7 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK--S 151
P + D + + +V A+ + E G V + DGP VK+++
Sbjct: 698 RPVKLHDMRRKLMDRRVTASDAGMET---IENGSMVRIVDGPGKGMRLTVKHINRGTLWG 754
Query: 152 RVHVEVVIFGRVTPV 166
+V +V FG + V
Sbjct: 755 KVRGDVADFGGIVAV 769
>gi|189423823|ref|YP_001951000.1| penicillin-binding protein, 1A family [Geobacter lovleyi SZ]
gi|189420082|gb|ACD94480.1| penicillin-binding protein, 1A family [Geobacter lovleyi SZ]
Length = 818
Score = 34.7 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 30/138 (21%)
Query: 28 RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG----YVLIKAVMTDKVYHTIKD-- 81
R ++ V + + G E + + G Y + A M Y ++
Sbjct: 271 RRVMNDRVAYFLEQMRIYLEEKYG-----EDQLYKGGLKIYTTMNATMQGAAYEAVRSGL 325
Query: 82 --TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139
K GF G + + +EIE ++VE + S +VGE +
Sbjct: 326 KAVDKRQGFRGAVKY---LQQAEIEQFCDKVEEGID----SAALKVGET----------Y 368
Query: 140 NGIVKNVDEEKSRVHVEV 157
G+V VD K V V
Sbjct: 369 PGVVTAVDPAKGTATVRV 386
>gi|325287059|ref|YP_004262849.1| 50S ribosomal protein L24 [Cellulophaga lytica DSM 7489]
gi|324322513|gb|ADY29978.1| ribosomal protein L24 [Cellulophaga lytica DSM 7489]
Length = 104
Score = 34.7 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + G+ V + G G V +VD EK++ VE
Sbjct: 3 KLKIKTGDTVRIIAGDHKGTEGKVVSVDREKNKAIVE 39
>gi|242036627|ref|XP_002465708.1| hypothetical protein SORBIDRAFT_01g044240 [Sorghum bicolor]
gi|241919562|gb|EER92706.1| hypothetical protein SORBIDRAFT_01g044240 [Sorghum bicolor]
Length = 513
Score = 34.7 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 30/108 (27%)
Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA-----SFN 140
IGF PSP E + + + +G V FA
Sbjct: 135 IGF-----KPSPEARDEARAVAADWKRGKR---------IGTEVMFKQETFAFLHLVGVF 180
Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVE------LAYNQ-----VEKIV 177
G+V++V + + V I GR VE L +Q ++K+V
Sbjct: 181 GLVEDVGGAGEVLDLVVSISGRERAVEAFLVLGLDLDQHMPILIQKMV 228
>gi|154340088|ref|XP_001566001.1| transcription elongation regulator-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063319|emb|CAM45525.1| transcription elongation regulator-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 693
Score = 34.7 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+G+ V V+ G + G+V+NV + + + GRV P+++ QVE
Sbjct: 399 PISIGDSVRVTTGQLRNTIGVVENVFTNTNTAVLTCTVPGRVQPIKV---QVE 448
>gi|315427719|dbj|BAJ49315.1| large subunit ribosomal protein L24 [Candidatus Caldiarchaeum
subterraneum]
Length = 122
Score = 34.7 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVI 159
E + +V G+ V V G F + G VK VD ++ +V V I
Sbjct: 35 ELRNKYGRRAVRLRQGDTVKVIKGTFKNIEGKVKRVDVKRQMAYVENVSI 84
>gi|315425861|dbj|BAJ47514.1| large subunit ribosomal protein L24 [Candidatus Caldiarchaeum
subterraneum]
Length = 119
Score = 34.7 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVI 159
E + +V G+ V V G F + G VK VD ++ +V V I
Sbjct: 32 ELRNKYGRRAVRLRQGDTVKVIKGTFKNIEGKVKRVDVKRQMAYVENVSI 81
>gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
Length = 1386
Score = 34.7 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 26 LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
+ G D + + +P + + + +G P D + +K PK
Sbjct: 775 IRSYGRDPYIYKSWVPVKPPLELVRGYWKAKPDEEEP--------PADAPWVVVKRLPKN 826
Query: 86 IGFLGTGENPSPVTDS 101
GF+ P +
Sbjct: 827 CGFVKNSRIPIELPKE 842
>gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
Length = 819
Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 26 LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
+ G D + + +P + + + +G P D + +K PK
Sbjct: 208 IRSYGRDPYIYKSWVPVKPPLELVRGYWKAKPDEEEP--------PADAPWVVVKRLPKN 259
Query: 86 IGFLGTGENPSPVTDS 101
GF+ P +
Sbjct: 260 CGFVKNSRIPIELPKE 275
>gi|91772095|ref|YP_564787.1| 30S ribosomal protein S4e [Methanococcoides burtonii DSM 6242]
gi|91711110|gb|ABE51037.1| SSU ribosomal protein S4E [Methanococcoides burtonii DSM 6242]
Length = 236
Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
++ V + +EVG + G A G +K ++ KS + V I G E+ + +
Sbjct: 160 DKKVVKHIKYEVGNLAMIVGGSHAGEVGSIKEINTVKSSKNNTVTISG-----EIEFETI 214
Query: 174 E 174
E
Sbjct: 215 E 215
>gi|312137087|ref|YP_004004424.1| lsu ribosomal protein l24p [Methanothermus fervidus DSM 2088]
gi|311224806|gb|ADP77662.1| LSU ribosomal protein L24P [Methanothermus fervidus DSM 2088]
Length = 123
Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E + +V G++V V G F G V+NVD ++ RV+
Sbjct: 20 PLHIRQKIMRSTLSK-ELRKKYKRRTVPIRRGDKVEVMRGDFKGHVGKVENVDLKRYRVY 78
Query: 155 VE 156
VE
Sbjct: 79 VE 80
>gi|307151609|ref|YP_003886993.1| Methylenetetrahydrofolate dehydrogenase (NADP(+)) [Cyanothece sp.
PCC 7822]
gi|306981837|gb|ADN13718.1| Methylenetetrahydrofolate dehydrogenase (NADP(+)) [Cyanothece sp.
PCC 7822]
Length = 293
Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV-DEEKSRVHVEVVIFG 161
+ I ++ +Q + G V + G V V ++EKS V + FG
Sbjct: 15 AQKIQRNLKEEIQTLQPKIGRPPGLAVLMVG----DNPGSVVYVRNKEKSCAKVGIASFG 70
Query: 162 RVTPVELAYNQVEKIV 177
R P + +++E+++
Sbjct: 71 RHFPTQTGADELEEVI 86
>gi|225011658|ref|ZP_03702096.1| ribosomal protein L24 [Flavobacteria bacterium MS024-2A]
gi|225004161|gb|EEG42133.1| ribosomal protein L24 [Flavobacteria bacterium MS024-2A]
Length = 104
Score = 34.7 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + + G+ V V G G V ++ EK+R VE
Sbjct: 1 MATKIKIKKGDTVRVIAGSEKGSEGTVVSISREKNRAIVE 40
>gi|66826067|ref|XP_646388.1| GlcNAc transferase [Dictyostelium discoideum AX4]
gi|60474363|gb|EAL72300.1| GlcNAc transferase [Dictyostelium discoideum AX4]
Length = 677
Score = 34.3 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 3 PRWYIVQVYSNCEKKAVES-IGGRLSRSGLDHLVTEITIPSE 43
+Y++ V +N + + + + + + +I IP +
Sbjct: 377 KHYYVIHVDANFKDRVKINQLKEYVKNLKNQNYKKDIFIPKK 418
>gi|116492662|ref|YP_804397.1| molecular chaperone DnaK [Pediococcus pentosaceus ATCC 25745]
gi|122265874|sp|Q03FR7|DNAK_PEDPA RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName:
Full=Heat shock 70 kDa protein; AltName: Full=Heat shock
protein 70
gi|116102812|gb|ABJ67955.1| Molecular chaperone [Pediococcus pentosaceus ATCC 25745]
Length = 619
Score = 34.3 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 98 VTDSEIEHIMNQV---EAAVQRPVSSVFF--EVGERVCVSDGPFASFNGIVKNVDEEKSR 152
++D EI+ +M + E A ++ V EV + + +D G V +E +
Sbjct: 480 LSDEEIDRMMKEAKENEEADKKRKEEVDLRNEVDQLIFTTDKTLKDLEGKVSE--DEIKK 537
Query: 153 VH 154
Sbjct: 538 AK 539
>gi|125974734|ref|YP_001038644.1| ATP-dependent RecD/TraA family DNA helicase [Clostridium
thermocellum ATCC 27405]
gi|125714959|gb|ABN53451.1| ATP-dependent DNA helicase, RecD/TraA family [Clostridium
thermocellum ATCC 27405]
Length = 746
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G F GI+ +D+E+ ++ V F VE Y ++++
Sbjct: 618 GVFNGDMGIIVEIDDEEQKIKVL---FDDEKLVEYDYTILDEL 657
>gi|225461164|ref|XP_002282889.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147860928|emb|CAN78749.1| hypothetical protein VITISV_002445 [Vitis vinifera]
Length = 191
Score = 34.3 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
+ E P P+ + + + + +VG+ V + G G + +
Sbjct: 37 STEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIFRHN 96
Query: 151 SRVHV 155
S V V
Sbjct: 97 STVVV 101
>gi|327398884|ref|YP_004339753.1| metal dependent phosphohydrolase [Hippea maritima DSM 10411]
gi|327181513|gb|AEA33694.1| metal dependent phosphohydrolase [Hippea maritima DSM 10411]
Length = 394
Score = 34.3 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 99 TDSEIEHIMNQVEAA-VQRPVSSVFFEV------GERVCVSDGPFASFNGIVKNVDEEKS 151
T + IM ++ + R V + FE+ G V +S G F ++ GIV ++E+
Sbjct: 299 TPDQAFFIMKRMAGTHINREVLKMMFEIIPAYPLGTTVIISTGRFKNYIGIVSKINEDNL 358
Query: 152 RVHVEVVIFG----RVTPVELAYN 171
V V+F R+ P E+ +
Sbjct: 359 SRPVIRVMFDDRRKRIEPFEIDLS 382
>gi|158521904|ref|YP_001529774.1| lysine 2,3-aminomutase YodO family protein [Desulfococcus
oleovorans Hxd3]
gi|158510730|gb|ABW67697.1| lysine 2,3-aminomutase YodO family protein [Desulfococcus
oleovorans Hxd3]
Length = 454
Score = 34.3 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
I++TP + L +G +P ++D++++ I+ ++ + + +V
Sbjct: 225 IRNTPTIRDVLLSGGDPLTLSDAKLDWILGRIREIPHVEIIRIGTKV 271
>gi|302664243|ref|XP_003023755.1| KOW motif domain protein [Trichophyton verrucosum HKI 0517]
gi|291187766|gb|EFE43137.1| KOW motif domain protein [Trichophyton verrucosum HKI 0517]
Length = 364
Score = 34.3 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIF 160
+ + + V V F G+RVC+ G G V VDEE V VE V +
Sbjct: 86 LRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEESQSVTVEGVNML 140
>gi|239830960|ref|ZP_04679289.1| sulfate ABC transporter, ATP-binding protein [Ochrobactrum
intermedium LMG 3301]
gi|239823227|gb|EEQ94795.1| sulfate ABC transporter, ATP-binding protein [Ochrobactrum
intermedium LMG 3301]
Length = 367
Score = 34.3 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 81 DTPKVIGFLGTGEN-PSPVTDSE---IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPF 136
++P V GF+G P V E ++ + V + +FF + V + DG
Sbjct: 246 NSPGVYGFIGESSTLPVRVEKGEVWLVDRNIGLTVDGVADGDAQLFFRPHD-VELLDGCG 304
Query: 137 ASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
G V + VE+ + G VE+
Sbjct: 305 GCIAGTVVASRRSGGKRRVELEVGGARERVEIEI 338
>gi|256005255|ref|ZP_05430222.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360]
gi|281418797|ref|ZP_06249816.1| helicase, RecD/TraA family [Clostridium thermocellum JW20]
gi|255990806|gb|EEU00921.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360]
gi|281407881|gb|EFB38140.1| helicase, RecD/TraA family [Clostridium thermocellum JW20]
gi|316941868|gb|ADU75902.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 1313]
Length = 743
Score = 34.3 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G F GI+ +D+E+ ++ V F VE Y ++++
Sbjct: 615 GVFNGDMGIIVEIDDEEQKIKVL---FDDEKLVEYDYTILDEL 654
>gi|29171586|ref|NP_808632.1| hypothetical protein PSPTO_B0046 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28856079|gb|AAO59135.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 177
Score = 34.3 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 18 AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFFPGYVLIKAVMTDKV 75
+S+ + R G++ + P R R ++E+ R FPGY+L++
Sbjct: 13 VYQSLITSIERLGVE-----VYSPESITYRKRPDRPSSTEKVVRLFPGYLLLRFDPQVTH 67
Query: 76 YHTIKDTPKVIGFLGTGEN 94
TI GF+ G
Sbjct: 68 TTTITALNGARGFVQFGGQ 86
>gi|312065458|ref|XP_003135800.1| hypothetical protein LOAG_00212 [Loa loa]
gi|307769021|gb|EFO28255.1| hypothetical protein LOAG_00212 [Loa loa]
Length = 1409
Score = 34.3 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
+ + ++ S F G+ V V DG + G V+NVD EK
Sbjct: 728 LKKELEGMKVKDLSYIFSPGDYVEVMDGELVNLRGRVQNVDGEK 771
>gi|47229182|emb|CAG03934.1| unnamed protein product [Tetraodon nigroviridis]
Length = 493
Score = 34.3 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
LG G + S + D E + +R + G V V GP G ++ V
Sbjct: 206 LGLGADRSLIKDLEPSKRKQPPKPGDERTQEEELVMAPGSCVLVESGPHKDKYGKIEGVY 265
Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
+ +RV V++ I G+ V+++ V +
Sbjct: 266 PDNARVVVKLAIGGK--TVDISQYIVRLV 292
>gi|269860187|ref|XP_002649816.1| transcription initiation protein SPT5 [Enterocytozoon bieneusi
H348]
gi|220066757|gb|EED44229.1| transcription initiation protein SPT5 [Enterocytozoon bieneusi
H348]
Length = 592
Score = 34.3 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 78 TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE------VGERVCV 131
+ LG + + S ++ + V +++P V F+ +G+ V +
Sbjct: 343 IVLKINGNTVVLGIRNMEAEMKVS-VDDLELPVSEKIEKPPVKVPFKKHINPLIGKSVKI 401
Query: 132 SDGPFASFNGIVKNVDE 148
+ G F G VK ++
Sbjct: 402 THGEFKGLIGTVKEINR 418
>gi|73544587|ref|XP_848188.1| transcription elongation regulator-like protein [Leishmania major
strain Friedlin]
gi|321438541|emb|CBZ12300.1| transcription elongation regulator-like protein [Leishmania major
strain Friedlin]
Length = 700
Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 24/155 (15%)
Query: 39 TIPSERVVSVRKGRKVNSERRFF---PGYVLIKAVMTDKVY---------HTIKDTPKVI 86
+P E V + F V ++ + ++ + +K
Sbjct: 306 VVPREDFVQKPFNKATKRLEPRFFTPRQAVGVREMENSYIWGDLHFDREGYLLKTVS--T 363
Query: 87 GFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-------FFEVGERVCVSDGPFASF 139
+ +G + E+ N V+R + + +G+ V V+ G +
Sbjct: 364 RMVISGAQLEQPSTEELARFYNDQREKVERALKAAEAAAQVPHISIGDSVRVTTGQLRNT 423
Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
G+V+NV + + + GRV P+++ QVE
Sbjct: 424 IGVVENVFTNTNTAVLTCTVPGRVQPIKV---QVE 455
>gi|50086461|ref|YP_047971.1| IMP dehydrogenase [Acinetobacter sp. ADP1]
gi|49532437|emb|CAG70149.1| IMP dehydrogenase [Acinetobacter sp. ADP1]
Length = 488
Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 30 GLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
L+ V+ I P +R+V+V++G S + + + K ++ D + H +K V F
Sbjct: 143 NLEQPVSNIMTPQDRLVTVKEGASKESIQALLQKHRIEKVLVVDDL-HALKGLITVTDFR 201
Query: 90 GTGENPSPVTDSEIE-HIMNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
P+ D + V + P E G V V D G+++ V
Sbjct: 202 KAELYPNACKDELGRLRVGAAVGTGAETPARVEALVEAGADVIVVDTAHGHSAGVIERVR 261
Query: 148 EEKS 151
K
Sbjct: 262 WVKQ 265
>gi|53712721|ref|YP_098713.1| putative transcriptional regulatory protein UpxY-like protein
[Bacteroides fragilis YCH46]
gi|60680881|ref|YP_211025.1| putative LPS biosynthesis related transcriptional regulatory
protein [Bacteroides fragilis NCTC 9343]
gi|253563291|ref|ZP_04840748.1| UpaY [Bacteroides sp. 3_2_5]
gi|265762815|ref|ZP_06091383.1| UpaY [Bacteroides sp. 2_1_16]
gi|14578623|gb|AAK68912.1|AF189282_2 UpaY [Bacteroides fragilis]
gi|52215586|dbj|BAD48179.1| putative transcriptional regulatory protein UpxY homolog
[Bacteroides fragilis YCH46]
gi|60492315|emb|CAH07080.1| putative LPS biosynthesis related transcriptional regulatory
protein [Bacteroides fragilis NCTC 9343]
gi|251947067|gb|EES87349.1| UpaY [Bacteroides sp. 3_2_5]
gi|263255423|gb|EEZ26769.1| UpaY [Bacteroides sp. 2_1_16]
Length = 172
Score = 34.3 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 16/148 (10%)
Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
M+ + W+ + + E ++ L E +P++ V+ K R+ E
Sbjct: 1 MSEQQEYWFAARTKKDQEFSVRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51
Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQ 115
+ ++ D+ + KD + ++ V + ++E ++ A +
Sbjct: 52 VPVIKNLIFVRTT-KDRAWSITKDDHVPLYYMKDLYTHTLLIVPNKQMEDFKFVMDLAPE 110
Query: 116 RPVS-SVFFEVGERVCVSDGPFASFNGI 142
+ VG +V V G F G
Sbjct: 111 NVTFDDLPLTVGTKVQVVKGEFCGIEGE 138
>gi|322370388|ref|ZP_08044947.1| putative PAS/PAC sensor protein [Haladaptatus paucihalophilus
DX253]
gi|320550096|gb|EFW91751.1| putative PAS/PAC sensor protein [Haladaptatus paucihalophilus
DX253]
Length = 561
Score = 34.3 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
+A + + + D P V + EI ++ V+ + + GE
Sbjct: 75 RAELLGEHASLLVDEPYVTRV-----------EDEIADLLANEPGGVRAMEAPIRNADGE 123
Query: 128 RV--------CVSDGPFASFNGIVKNVDEEKSR 152
RV +SDG F G+V+++ EK R
Sbjct: 124 RVPCELRFSVVLSDGEFEGTVGVVRDISWEKRR 156
>gi|38638167|ref|NP_943276.1| hypothetical protein pEU30p09 [Erwinia amylovora]
gi|37682065|gb|AAQ97951.1| ORF9 [Erwinia amylovora]
Length = 155
Score = 34.3 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 14/108 (12%)
Query: 3 PRWYIVQVYSNCEKKAVESIG-GRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60
WY++ SN + ++ E P R + + +
Sbjct: 2 KNWYVLAFTSNKFGAVERFLKLNKI----------EFLCPMHEHSYSRPDKSFSIRKSLV 51
Query: 61 --FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
FPGY+ + + + + G + P V + I+ I
Sbjct: 52 PTFPGYLFVYLDFNETHPEKLARFQYIYGLITFSNAPMAVPEVTIQVI 99
>gi|148652041|ref|YP_001279134.1| aromatic amino acid aminotransferase [Psychrobacter sp. PRwf-1]
gi|148571125|gb|ABQ93184.1| aromatic amino acid aminotransferase [Psychrobacter sp. PRwf-1]
Length = 398
Score = 34.3 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 21/109 (19%)
Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGY-----VLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
+ P+E G+ + RR + ++ VM D+ H + +V G
Sbjct: 260 VVCPTEEEAERVFGQLKFTVRRIYSSPPSHGGRVVDIVMNDEALHK-QWVDEVYGM---- 314
Query: 93 ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141
I+ + ++++ ++ V F + + +G F SF G
Sbjct: 315 -------RDRIKAMRLKLKSVLETKVPGRNF---DYLTTQNGMF-SFTG 352
>gi|324499705|gb|ADY39881.1| Transcription elongation factor SPT5 [Ascaris suum]
Length = 1223
Score = 34.3 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + + + F G+ V V+DG + G V++VD E +V V
Sbjct: 535 LKKELEGTRVKERAYTFAPGDYVEVADGELVNLRGRVQSVDGE--KVVVL 582
>gi|171462872|ref|YP_001796985.1| DNA-directed RNA polymerase, beta' subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|212288483|sp|B1XSP4|RPOC_POLNS RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP
subunit beta'; AltName: Full=RNA polymerase subunit
beta'; AltName: Full=Transcriptase subunit beta'
gi|171192410|gb|ACB43371.1| DNA-directed RNA polymerase, beta' subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 1420
Score = 34.3 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 15/123 (12%)
Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72
E K + RL + +D E IP E+ V V G+ VN G ++T
Sbjct: 1176 GKETKGKQ----RLVITDMDGEANEFLIPKEKQVLVHDGQVVNKGEMIVEGPADPHDILT 1231
Query: 73 -----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVG 126
+ + + + V G + D IE I+ Q+ VQ F G
Sbjct: 1232 LKGIEELAIYIVDEVQDVYRLQG-----VKINDKHIEVIVRQMLRRVQVTDPGDTSFITG 1286
Query: 127 ERV 129
E+V
Sbjct: 1287 EQV 1289
>gi|170110951|ref|XP_001886680.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638358|gb|EDR02636.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 91
Score = 34.3 bits (78), Expect = 7.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 17 KAVESIGGRLSRSGLDHLVTEI----TIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
K ++I R L+ VTE+ +P V S R+G K E F G++++
Sbjct: 36 KVQDAID----RLNLEDWVTELDGQDLLPVRDVASKRRGDKRMKEENFMEGHMMVH 87
>gi|156938196|ref|YP_001435992.1| 50S ribosomal protein L24P [Ignicoccus hospitalis KIN4/I]
gi|166222062|sp|A8ACD3|RL24_IGNH4 RecName: Full=50S ribosomal protein L24P
gi|156567180|gb|ABU82585.1| LSU ribosomal protein L24P [Ignicoccus hospitalis KIN4/I]
Length = 125
Score = 34.3 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
P + + +++ E + V + G+ V + G F G V VD +K+R++
Sbjct: 20 PLHLRHKFMNAPLSK-ELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIY 78
Query: 155 V 155
V
Sbjct: 79 V 79
>gi|324020963|gb|EGB90182.1| transcription termination factor NusG [Escherichia coli MS 117-3]
Length = 184
Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 41 PSERVVSVRKGRKVNSERRFF---PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97
P R + R F PGY I A + ++ I F+ G P
Sbjct: 47 PLITRKIRRADSRRCYRERIFAIFPGYFFILANFDIQPVSALRRHSAFIDFVKFGGEIKP 106
Query: 98 VTDSEIEHIMN 108
V ++ +M
Sbjct: 107 VNKDIVDGLMK 117
>gi|325958543|ref|YP_004290009.1| 50S ribosomal protein L24 [Methanobacterium sp. AL-21]
gi|325329975|gb|ADZ09037.1| ribosomal protein L24 [Methanobacterium sp. AL-21]
Length = 117
Score = 33.9 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E Q S+ + G+ + V G F G ++ VD + RV +E
Sbjct: 31 ELREQYKRRSLPVKKGDTIKVMRGDFKDHEGKIEKVDLKNYRVMIE 76
>gi|254478840|ref|ZP_05092205.1| helicase, RecD/TraA family [Carboxydibrachium pacificum DSM 12653]
gi|214035202|gb|EEB75911.1| helicase, RecD/TraA family [Carboxydibrachium pacificum DSM 12653]
Length = 735
Score = 33.9 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 111 EAAVQRPVSSVFFEVGERVCVS---------------DGPFASFNGIVKNVDEEKSRVHV 155
+ ++P+ F VG++V +G F GI++++DEE V V
Sbjct: 574 KDKAEKPMKEFTFRVGDKVMQIKNNYRMTWKRGDEEGEGVFNGDIGIIQSIDEELQEVTV 633
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
F V ++ ++++
Sbjct: 634 ---YFDDEKVVTYDFSDLDEL 651
>gi|296826944|ref|XP_002851055.1| KOW domain-containing protein domain-containing protein
[Arthroderma otae CBS 113480]
gi|238838609|gb|EEQ28271.1| KOW domain-containing protein domain-containing protein
[Arthroderma otae CBS 113480]
Length = 354
Score = 33.9 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
+ V V G+RVC+ G G V VDEE V VE V +F P
Sbjct: 93 ESKRVKYVTLAPGDRVCMVRGRDKGKIGKVLQVDEESQSVTVEGVNMFDVEFP 145
>gi|20806994|ref|NP_622165.1| exonuclease V subunit alpha [Thermoanaerobacter tengcongensis MB4]
gi|20515477|gb|AAM23769.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase
superfamily I member [Thermoanaerobacter tengcongensis
MB4]
Length = 765
Score = 33.9 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 111 EAAVQRPVSSVFFEVGERVCVS---------------DGPFASFNGIVKNVDEEKSRVHV 155
+ ++P+ F VG++V +G F GI++++DEE V V
Sbjct: 604 KDKAEKPMKEFTFRVGDKVMQIKNNYRMTWKRGHEEGEGVFNGDIGIIQSIDEELQEVTV 663
Query: 156 EVVIFGRVTPVELAYNQVEKI 176
F V ++ ++++
Sbjct: 664 ---YFDDEKVVTYDFSDLDEL 681
>gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 511
Score = 33.9 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFN 140
G P P++++E+ I V+ AV S G+ V + + PF
Sbjct: 349 GAEGKPGPLSEAELNRINALVKEAVGYTASR-----GDSVNILNSPFNGVE 394
>gi|9507547|ref|NP_052554.1| hypothetical protein ColIb-P9_p108 [Plasmid ColIb-P9]
gi|4512544|dbj|BAA75193.1| traB [Plasmid ColIb-P9]
gi|70610261|gb|AAZ05408.1| TraB [Salmonella enterica]
Length = 177
Score = 33.9 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 41 PSERVVSVRKGRKVNSERRFF---PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97
P R + R F PGY I A + ++ I F+ G P
Sbjct: 40 PLITRKIRRADSRRCYRERIFAIFPGYFFILANFDIQPVSALRRHSAFIDFVKFGGEIKP 99
Query: 98 VTDSEIEHIMN 108
V ++ +M
Sbjct: 100 VNKDIVDGLMK 110
>gi|320101355|ref|YP_004176947.1| 50S ribosomal protein L24P [Desulfurococcus mucosus DSM 2162]
gi|319753707|gb|ADV65465.1| LSU ribosomal protein L24P [Desulfurococcus mucosus DSM 2162]
Length = 133
Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
E + V + G+ V + G F G V VD ++ R+ VE
Sbjct: 35 ELREKLGVKRLPVRQGDTVRIMRGEFKGHEGKVVEVDLKRVRLFVE 80
>gi|319952185|ref|YP_004163452.1| lsu ribosomal protein l24p [Cellulophaga algicola DSM 14237]
gi|319420845|gb|ADV47954.1| LSU ribosomal protein L24P [Cellulophaga algicola DSM 14237]
Length = 104
Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ +VG+ V + G G + +D +K++ VE
Sbjct: 2 KKLKIKVGDIVRIVAGDHKGVEGKIMKIDFDKNKAIVE 39
>gi|153007468|ref|YP_001368683.1| sulfate ABC transporter ATPase subunit [Ochrobactrum anthropi ATCC
49188]
gi|151559356|gb|ABS12854.1| sulfate ABC transporter, ATPase subunit [Ochrobactrum anthropi ATCC
49188]
Length = 354
Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 81 DTPKVIGFLGTGEN-PSPVTDSEI---EHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPF 136
++P V GF+G P V EI + + V + +FF + V + DG
Sbjct: 229 NSPGVYGFIGESSTLPVRVEKGEIWLVDRNIGLTAQDVADGDAQLFFRPHD-VELLDGCG 287
Query: 137 ASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
G V + VE+ + G VE+
Sbjct: 288 GCIAGTVVASRRSGGKRRVELEVGGARERVEIEI 321
>gi|126178166|ref|YP_001046131.1| lysine 2,3-aminomutase YodO family protein [Methanoculleus
marisnigri JR1]
gi|125860960|gb|ABN56149.1| L-lysine 2,3-aminomutase [Methanoculleus marisnigri JR1]
Length = 437
Score = 33.9 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
+ I++ P + L +G +P + D ++ I+ +++ V +
Sbjct: 162 ESLDYIRENPGIRDVLLSGGDPFMLPDDRLDWILTELDDIEHVEVVRI 209
>gi|148244576|ref|YP_001219270.1| IMP dehydrogenase [Candidatus Vesicomyosocius okutanii HA]
gi|146326403|dbj|BAF61546.1| IMP dehydrogenase [Candidatus Vesicomyosocius okutanii HA]
Length = 486
Score = 33.9 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
L+ LV + P ++++V++G +N R + + + ++TD ++ +K V
Sbjct: 143 LNELVKNVMTPQNKLITVKEGTNINKVRSLLQKHRIERIIITDDTFN-LKGMINVSDIQK 201
Query: 91 TGENPSPVTDSE--IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
+ + P+ DSE + A E G V V D G++ V E
Sbjct: 202 STDFPNACKDSEERLRVGAAVGVGAGTSKRIDALIEAGVDVIVIDTAHGHSQGVLNRVAE 261
Query: 149 EKSR 152
K++
Sbjct: 262 TKNK 265
>gi|298481738|ref|ZP_06999928.1| transcriptional regulator [Bacteroides sp. D22]
gi|298271960|gb|EFI13531.1| transcriptional regulator [Bacteroides sp. D22]
Length = 72
Score = 33.9 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
+ RWY+ V + EKK E RLS+ G+D +P ++ + R+ +
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVD 70
>gi|86141151|ref|ZP_01059697.1| ribosomal protein L24 [Leeuwenhoekiella blandensis MED217]
gi|85831710|gb|EAQ50165.1| ribosomal protein L24 [Leeuwenhoekiella blandensis MED217]
Length = 103
Score = 33.9 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
+ + +VG+ V V G G V+ V ++K++ VE
Sbjct: 2 TKLKIKVGDNVKVIAGDHKGQEGKVQRVIKDKNKAIVE 39
>gi|301307918|ref|ZP_07213874.1| putative transcriptional regulator [Bacteroides sp. 20_3]
gi|300834261|gb|EFK64875.1| putative transcriptional regulator [Bacteroides sp. 20_3]
Length = 178
Score = 33.9 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 31/173 (17%)
Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
+WY+++ C K + + L ++ +P + + ++K +KV +
Sbjct: 7 AQWYVMRDLKRCNAK-------KPAYKQLQEAGVKVFVPLKWQIILQKDKKVREKVPVIQ 59
Query: 63 GYVLI---KAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
+ + + + V Y +++T + P V+D E++ + V +
Sbjct: 60 DLLFVYDSRRHLDSIVERTKTLQYRWLRNTFR---------EPMTVSDLEMDRFIQAVSS 110
Query: 113 AVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
+ P G ++ + G + G + + K + + V + G
Sbjct: 111 SDSPKYYLPEEITPQMCGRKIRIIGGSLNGYEGCLLKIRGSKIK-RLLVELKG 162
>gi|298208758|ref|YP_003716937.1| MutS2 family protein [Croceibacter atlanticus HTCC2559]
gi|83848685|gb|EAP86554.1| MutS2 family protein [Croceibacter atlanticus HTCC2559]
Length = 722
Score = 33.9 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
+ +VG++V + DG G + + EK R V IF +++ N++E
Sbjct: 671 PKISLKVGDKVRLQDG---KATGTIDKI--EKDRATVNYGIF----TTDVSLNELE 717
>gi|400989|sp|Q02764|RK24_TOBAC RecName: Full=50S ribosomal protein L24, chloroplastic; AltName:
Full=CL24; Flags: Precursor
gi|170273|gb|AAA34086.1| ribosomal protein L24 [Nicotiana tabacum]
gi|170324|gb|AAA34114.1| ribosomal protein L24 [Nicotiana tabacum]
Length = 187
Score = 33.9 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 9/68 (13%), Positives = 24/68 (35%)
Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
+ + E P + + + + + ++G+ V + G G + +
Sbjct: 29 LVKSTEGPCLIQAKLKRWERKECKPNSLPVLHKMHVKLGDTVKIISGHDKGKVGEITEII 88
Query: 148 EEKSRVHV 155
+ S+V V
Sbjct: 89 KHNSKVVV 96
>gi|256828026|ref|YP_003156754.1| lysine 2,3-aminomutase YodO family protein [Desulfomicrobium
baculatum DSM 4028]
gi|256577202|gb|ACU88338.1| lysine 2,3-aminomutase YodO family protein [Desulfomicrobium
baculatum DSM 4028]
Length = 437
Score = 33.9 bits (77), Expect = 9.7, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
++ +R P + + + + I++TP+V L +G +P ++D ++ ++ ++
Sbjct: 145 KRKVGDRDSIPS----REDLRQGIEY-IRNTPQVRDVLLSGGDPFLLSDDMLDWLLTEIG 199
Query: 112 AAVQRPVSSV 121
V +
Sbjct: 200 GIEHVEVVRI 209
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.312 0.171 0.545
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,139,393,442
Number of Sequences: 13984884
Number of extensions: 204578980
Number of successful extensions: 515561
Number of sequences better than 10.0: 3115
Number of HSP's better than 10.0 without gapping: 4278
Number of HSP's successfully gapped in prelim test: 889
Number of HSP's that attempted gapping in prelim test: 504854
Number of HSP's gapped (non-prelim): 5487
length of query: 177
length of database: 4,792,584,752
effective HSP length: 129
effective length of query: 48
effective length of database: 2,988,534,716
effective search space: 143449666368
effective search space used: 143449666368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 77 (33.9 bits)