BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780148|ref|YP_003064561.1| transcription antitermination
protein NusG [Candidatus Liberibacter asiaticus str. psy62]
         (177 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|317123109|ref|YP_004103112.1| transcription antitermination protein nusG [Thermaerobacter
           marianensis DSM 12885]
 gi|315593089|gb|ADU52385.1| transcription antitermination protein nusG [Thermaerobacter
           marianensis DSM 12885]
          Length = 234

 Score =  201 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 110/173 (63%), Gaps = 2/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  E K   +I  R+   G+   + E+ +P+E  + V+ G++   +R+ FPG
Sbjct: 64  QWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFPG 123

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++ +MTD  ++ +++TP V GF+G G  P+P+  SE+E I  Q+   +  P   + F
Sbjct: 124 YVLVEMIMTDDSWYVVRNTPGVTGFVGAGNKPTPLLPSEVEQIRRQMG--MDEPRPLIRF 181

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVGE V V+DGPF  F G V+++D +K ++ V V +FGR TPVEL + QVEKI
Sbjct: 182 EVGESVKVADGPFEGFIGQVESIDHQKGKLRVLVSMFGRETPVELDFTQVEKI 234


>gi|313903164|ref|ZP_07836558.1| transcription antitermination protein nusG [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466666|gb|EFR62186.1| transcription antitermination protein nusG [Thermaerobacter
           subterraneus DSM 13965]
          Length = 236

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 2/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  E K   +I  R+   G+   + E+ +P+E  + V+ G++   +R+ FPG
Sbjct: 66  QWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFPG 125

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+  +MTD  ++ +++TP V GF+G G  P+P+  SE+E I  Q+   V  P   + F
Sbjct: 126 YVLVDMIMTDDSWYVVRNTPGVTGFVGAGSKPTPLLPSEVEQIRRQMG--VDEPRPLIRF 183

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVGE V V+DGPF  F G V+ +D +K ++ V V +FGR TPVEL + QVEK+
Sbjct: 184 EVGESVKVADGPFEGFIGQVETIDHQKGKLRVLVSMFGRETPVELDFTQVEKL 236


>gi|217979960|ref|YP_002364107.1| NusG antitermination factor [Methylocella silvestris BL2]
 gi|217505336|gb|ACK52745.1| NusG antitermination factor [Methylocella silvestris BL2]
          Length = 176

 Score =  190 bits (482), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 102/176 (57%), Positives = 130/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  + ++ GL     EI +P+E+VV VR+GRK+NSER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIKEQAAQRGLSAKFEEILVPTEQVVEVRRGRKINSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  ++D +YH IK+TPKV GFLG  + P P++D+E + I  QV   V+RP +S
Sbjct: 61  FPGYVLVKCDLSDDIYHLIKNTPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE V V+DGPFASFNG V+ VDE +SRV V V IFGR TPVEL Y QVEK+
Sbjct: 121 ISFEIGETVRVADGPFASFNGTVEEVDESRSRVKVAVSIFGRATPVELEYAQVEKV 176


>gi|288957408|ref|YP_003447749.1| transcriptional antiterminator [Azospirillum sp. B510]
 gi|288909716|dbj|BAI71205.1| transcriptional antiterminator [Azospirillum sp. B510]
          Length = 176

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 127/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK  ++I  + ++ GL+    EI +P+E VV VR+G K+N+ER+F
Sbjct: 1   MAARWYVVHVYSGFEKKVSQAIREKAAQKGLEDKFEEILVPTEEVVEVRRGSKINTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +  +K+TPKV  FLG G  P P++  E E I++QV+   +RP  S
Sbjct: 61  FPGYVLVKMDLTDESWSLVKNTPKVTDFLGGGGKPQPISQREAERIIHQVQEGFERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FEVGE+V VSDGPF SFNG+V+ VDEEKSR+ V V IFGR TPVEL Y QVEKI
Sbjct: 121 ITFEVGEQVRVSDGPFTSFNGVVEEVDEEKSRLKVAVSIFGRSTPVELEYTQVEKI 176


>gi|115378476|ref|ZP_01465635.1| transcription termination/antitermination factor NusG [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822265|ref|YP_003954623.1| transcription antitermination protein NusG [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364538|gb|EAU63614.1| transcription termination/antitermination factor NusG [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395337|gb|ADO72796.1| Transcription antitermination protein NusG [Stigmatella aurantiaca
           DW4/3-1]
          Length = 180

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YSN E +A +S+  ++   GL     EI IP E+VV + KG K  S+R+F
Sbjct: 1   MAKKWYVVHTYSNFENQAKKSLEEKIRLEGLQDQFGEILIPMEQVVEMVKGEKKTSKRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPV 118
           FPGY+ ++  + D+ +H +K+TPK+ GF G  +N  P+P++D+E+  + +Q+     +P 
Sbjct: 61  FPGYIFVQMDLNDRTWHLVKNTPKITGFPGAAQNQQPTPISDAEVARLTSQISEGTLKPK 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             V FE G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK
Sbjct: 121 PKVQFEDGDTVRVIDGPFANFNGTVEEVNPEKGRVKVLVSIFGRATPVELDFMQVEK 177


>gi|154247287|ref|YP_001418245.1| NusG antitermination factor [Xanthobacter autotrophicus Py2]
 gi|154161372|gb|ABS68588.1| NusG antitermination factor [Xanthobacter autotrophicus Py2]
          Length = 176

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 100/176 (56%), Positives = 129/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  +SI  +  + GL  L  +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MAKRWYIVHAYSNFEKKVADSIREQADQRGLTDLFEQILVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P+++SE   I+ QV+  ++RP  S
Sbjct: 61  FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISESEAMRILQQVQEGIERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 ITFEVGETVKVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEFAQVEKV 176


>gi|158422506|ref|YP_001523798.1| transcription antitermination protein [Azorhizobium caulinodans ORS
           571]
 gi|158329395|dbj|BAF86880.1| transcription antitermination protein [Azorhizobium caulinodans ORS
           571]
          Length = 180

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 128/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  +SI  +  +  L  L  +I +P+E+VV VR+GRKV++ER+F
Sbjct: 5   MAKRWYIVHAYSNFEKKVADSIREQAEQRNLTDLFEQILVPTEKVVEVRRGRKVDTERKF 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I+ QV+  ++RP  S
Sbjct: 65  FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISENEAMRILQQVQEGIERPKPS 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +EVGE V VSDGPFA+FNGIV+ VDE +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 125 ISYEVGETVKVSDGPFATFNGIVEEVDESRSRLKVAVSIFGRATPVELEFGQVEKV 180


>gi|162146512|ref|YP_001600971.1| transcription antitermination protein NusG [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543489|ref|YP_002275718.1| transcription antitermination protein NusG [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785087|emb|CAP54631.1| transcription antitermination protein NusG [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531166|gb|ACI51103.1| NusG antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 176

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 128/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK  + I  + ++ GL     ++ +PSE VV VR+G+KV++ER+F
Sbjct: 1   MAKRWYVVHVYSGFEKKIAQHIKEQAAQKGLSDHFGDVLVPSEEVVEVRRGQKVSAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+   +TD+ +H +KDTPKV GFLG+   PSP++ +E + IM Q +  V+RP  S
Sbjct: 61  FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPISGAEADRIMKQAQEGVERPRPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPF SFNG ++ VDE+K+R+ V V IFGR TPV+L Y+QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFTSFNGTIEEVDEDKARLKVSVSIFGRSTPVDLEYSQVEKL 176


>gi|154253165|ref|YP_001413989.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1]
 gi|154157115|gb|ABS64332.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1]
          Length = 176

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 130/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ES+  +  + GL     EI +P+E VV VR+GRK+N+ER+F
Sbjct: 1   MAKRWYIVHAYSNFEKKVAESLREQAEQQGLSEQFEEILVPTEEVVEVRRGRKINAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ YH +K+TPKV GFLG    P P++ +E++ I++QV+  V+RP  S
Sbjct: 61  FPGYVLVKVDLTDEAYHLVKNTPKVTGFLGADNKPQPISQAEVDRILHQVQEGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVADGPFASFNGFVEEVDEEKARLKVAVSIFGRATPVELEYAQVEKL 176


>gi|182678325|ref|YP_001832471.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182634208|gb|ACB94982.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 176

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 105/176 (59%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  + ++ GL     EI +P+E+VV +R+GRK+NSER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQAAQRGLTEKFEEILVPTEQVVEIRRGRKINSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD++YH IK+TPKV GFLG  + P P++D+E + I  QV   V+RP +S
Sbjct: 61  FPGYVLVKCDLTDELYHLIKETPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKTS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEVGETVRVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEYGQVEKV 176


>gi|15965096|ref|NP_385449.1| transcription antitermination protein NusG [Sinorhizobium meliloti
           1021]
 gi|307314831|ref|ZP_07594424.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
 gi|307322130|ref|ZP_07601504.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
 gi|15074276|emb|CAC45922.1| Probable transcription antitermination protein [Sinorhizobium
           meliloti 1021]
 gi|306892215|gb|EFN23027.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
 gi|306898945|gb|EFN29592.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
          Length = 176

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 107/176 (60%), Positives = 134/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL HL  +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKAKQKGLTHLFEKILVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLGT   P P+ D E + I+ QV+  V+RP  S
Sbjct: 61  FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176


>gi|298291420|ref|YP_003693359.1| NusG antitermination factor [Starkeya novella DSM 506]
 gi|296927931|gb|ADH88740.1| NusG antitermination factor [Starkeya novella DSM 506]
          Length = 176

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 97/175 (55%), Positives = 128/175 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  +SI  + ++ GL  L  ++ +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVADSIKEQAAQRGLTDLFEQVLVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P+ + E   I+ QV+  ++RP  S
Sbjct: 61  FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPIAEKEAMRILQQVQEGIERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE V VSDGPFASFNGIV+ VD+ +SR+ V V IFGR TPVEL + QVEK
Sbjct: 121 ITFEVGETVKVSDGPFASFNGIVEEVDDARSRLKVAVSIFGRATPVELEFAQVEK 175


>gi|304391359|ref|ZP_07373301.1| transcription termination/antitermination factor NusG [Ahrensia sp.
           R2A130]
 gi|303295588|gb|EFL89946.1| transcription termination/antitermination factor NusG [Ahrensia sp.
           R2A130]
          Length = 176

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YSN EKK V+SI  +  + GL+ L  +I +P+E+VV VRKG+KV++ER+F
Sbjct: 1   MAMRWYIIHAYSNFEKKVVDSILEQARQKGLEDLFEQILVPTEKVVEVRKGKKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL +  MTD+ +H IK+TPKV GFLG+   P P+ D E + I+NQV+  V+RP  S
Sbjct: 61  FPGYVLARMNMTDQAFHLIKNTPKVTGFLGSDNKPMPIPDREADRILNQVQEGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASF+G V+ VDEE++R+ VEV IFGR TPV+L Y QVEK+
Sbjct: 121 VTFEIGESVRVSDGPFASFSGTVEEVDEERARLKVEVSIFGRATPVDLEYAQVEKV 176


>gi|150396194|ref|YP_001326661.1| transcription antitermination protein NusG [Sinorhizobium medicae
           WSM419]
 gi|150027709|gb|ABR59826.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
          Length = 176

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 106/176 (60%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL HL  +I +P+E+VV +R+GRKV++ER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKARQKGLTHLFEKILVPTEKVVEIRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLGT   P P+ D E + I+ QV+  V+RP  S
Sbjct: 61  FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ISFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176


>gi|254470483|ref|ZP_05083887.1| transcription termination/antitermination factor NusG [Pseudovibrio
           sp. JE062]
 gi|211960794|gb|EEA95990.1| transcription termination/antitermination factor NusG [Pseudovibrio
           sp. JE062]
          Length = 177

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 130/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN E+K  E+I  R  + GL+    E+ +P+E+ V VR+GRKV+SER+F
Sbjct: 1   MAKRWYIVHAYSNFERKVAEAIKERAQQQGLEDSFDEVLVPTEKFVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  M+D  YH I DTPKV GFLG  + P P++++E + I+NQV+  V+ P  S
Sbjct: 61  FPGYVLVKMEMSDDAYHLINDTPKVSGFLGNDKKPMPISEAEAQRILNQVQEGVETPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V VSDGPFASF+G+V+ VDEE++R+ V V IFGR TPVEL Y QV+K+
Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDEERARLKVTVSIFGRATPVELEYGQVDKV 176


>gi|148256408|ref|YP_001240993.1| transcription antitermination protein NusG [Bradyrhizobium sp.
           BTAi1]
 gi|146408581|gb|ABQ37087.1| transcription antitermination protein nusG [Bradyrhizobium sp.
           BTAi1]
          Length = 185

 Score =  187 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 98/175 (56%), Positives = 130/175 (74%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIV  YSN EKK  ESI  +  +  L+ L  ++ +P E+V  VR+GRK+++ER+FFP
Sbjct: 10  KRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPLEKVTEVRRGRKIDAERKFFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  +TD+ +H IK+TPKV GFLG    P P+++SE   I+NQ++  V+RP SSV 
Sbjct: 70  GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILNQMQEGVERPKSSVS 129

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL +NQVEKIV
Sbjct: 130 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFNQVEKIV 184


>gi|316933506|ref|YP_004108488.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
 gi|315601220|gb|ADU43755.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
          Length = 176

 Score =  187 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P+++SE   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|296447965|ref|ZP_06889872.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
 gi|296254532|gb|EFH01652.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
          Length = 176

 Score =  187 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 125/176 (71%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI    ++  L     EI +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREGAAQRSLSDKFEEILVPTEQVVEVRRGRKVSSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  ++D V+  IK+TPKV GFLG    P P++++E   I  QV   V+RP  +
Sbjct: 61  FPGYVLVKCDLSDAVFSLIKNTPKVTGFLGADNKPMPISEAEALRIKGQVAEGVERPKPT 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FEVGE V V+DGPFASFNG+V+ VD+ +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 ISFEVGETVRVADGPFASFNGVVEEVDDARSRLKVAVSIFGRPTPVELEFGQVEKV 176


>gi|39936337|ref|NP_948613.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris CGA009]
 gi|192292063|ref|YP_001992668.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris TIE-1]
 gi|39650192|emb|CAE28715.1| transcription antitermination protein, NusG [Rhodopseudomonas
           palustris CGA009]
 gi|192285812|gb|ACF02193.1| NusG antitermination factor [Rhodopseudomonas palustris TIE-1]
          Length = 176

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIKEQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P+++SE   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|222085663|ref|YP_002544193.1| transcription termination/antitermination factor NusG
           [Agrobacterium radiobacter K84]
 gi|221723111|gb|ACM26267.1| transcription termination/antitermination factor NusG
           [Agrobacterium radiobacter K84]
          Length = 176

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 107/176 (60%), Positives = 136/176 (77%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKAKQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLG+   P P+ D E + I+ QV+  V+RP +S
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176


>gi|209884793|ref|YP_002288650.1| transcription termination/antitermination factor NusG [Oligotropha
           carboxidovorans OM5]
 gi|209872989|gb|ACI92785.1| transcription termination/antitermination factor NusG [Oligotropha
           carboxidovorans OM5]
          Length = 176

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 131/176 (74%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  +  L+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|328543344|ref|YP_004303453.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1]
 gi|326413089|gb|ADZ70152.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1]
          Length = 176

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  +SI  + ++ GL  L  EI +P E+VV VR+GRKV++ER+F
Sbjct: 1   MAKRWYIVHAYSNFEKKVADSIREKAAQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MTD+ +H IK+TPKV GFLGT + P P+++SE + I++QV+  V+RP  S
Sbjct: 61  FPGYVLVKMEMTDEAFHLIKNTPKVTGFLGTDQKPMPISESEAQRILHQVQEGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+KI
Sbjct: 121 ISFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKI 176


>gi|146340039|ref|YP_001205087.1| transcription antitermination protein NusG [Bradyrhizobium sp.
           ORS278]
 gi|146192845|emb|CAL76850.1| component in transcription antitermination [Bradyrhizobium sp.
           ORS278]
          Length = 185

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 96/175 (54%), Positives = 128/175 (73%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIV  YSN EKK  ESI  +  +  L+ L  ++ +P E V  VR+GRK+N+ER+FFP
Sbjct: 10  KRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPIENVTEVRRGRKINAERKFFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  +TD+ +H IK+TPKV GFLG    P P+++ E   I+NQ++  V+RP SSV 
Sbjct: 70  GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEGEAMRILNQMQEGVERPKSSVS 129

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FE+GE V V+DGPFASF+G+V+ +DE +SR+ V V IFGR TPVEL +NQVEK+V
Sbjct: 130 FEIGENVRVADGPFASFSGVVEEIDEARSRLKVAVSIFGRATPVELEFNQVEKVV 184


>gi|325293351|ref|YP_004279215.1| Transcription antitermination protein nusG [Agrobacterium sp.
           H13-3]
 gi|325061204|gb|ADY64895.1| Transcription antitermination protein nusG [Agrobacterium sp.
           H13-3]
          Length = 176

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/176 (62%), Positives = 138/176 (78%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GLDHL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKARQKGLDHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLG+   P P+ D E + I+ QV+  V+RP SS
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 VSFEVGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176


>gi|90424962|ref|YP_533332.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris BisB18]
 gi|90106976|gb|ABD89013.1| transcription antitermination protein nusG [Rhodopseudomonas
           palustris BisB18]
          Length = 176

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 131/176 (74%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRK+++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKIDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P+++ E   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEPEAMRILHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|256821650|ref|YP_003145613.1| NusG antitermination factor [Kangiella koreensis DSM 16069]
 gi|256795189|gb|ACV25845.1| NusG antitermination factor [Kangiella koreensis DSM 16069]
          Length = 177

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ +S  E K    +  R+  +GL+    E+ +P+E VV +R G+K  SER+F
Sbjct: 1   MALRWYVVQAFSGYENKVKTMLEERIQLAGLEDKFGEVLVPTEEVVEMRAGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M ++ +  +++TP+V+GF+G   + P+P+++ E   I+N++E +  +P  
Sbjct: 61  FPGYVLVQMDMDEESWQVVRNTPRVMGFIGGTSDRPAPISEKEANAILNRIEDSGDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE GE V V+DGPFA FNG+V++V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEPGEMVRVTDGPFADFNGVVESVNYEKSRLQVSVSIFGRSTPVELEFSQVEK 176


>gi|323136001|ref|ZP_08071084.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
 gi|322399092|gb|EFY01611.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
          Length = 176

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/176 (55%), Positives = 125/176 (71%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI    ++ GL     EI +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREGAAQRGLTDAFEEILVPTEQVVEVRRGRKVSTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD V+  IK+TPKV GFLG    P P+++ E   I  QV   V+RP  +
Sbjct: 61  FPGYVLVKCNLTDPVFSLIKNTPKVTGFLGADNKPMPISEEEAMRIKGQVAEGVERPKPT 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 ISFEVGETVRVADGPFASFNGLVEEVDEARSRLKVAVSIFGRPTPVELEFGQVEKV 176


>gi|115525607|ref|YP_782518.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris BisA53]
 gi|115519554|gb|ABJ07538.1| transcription antitermination protein nusG [Rhodopseudomonas
           palustris BisA53]
          Length = 176

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQSKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|297182720|gb|ADI18876.1| transcription antiterminator [uncultured Pseudomonadales bacterium
           HF0010_05E14]
          Length = 177

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+V  YS  E K   +I  R+    L     EI +P+E VV ++ G+K  SER+F
Sbjct: 1   MSKQWYVVHAYSGYENKVATAIEERIKLHNLQDKFGEIMVPTEEVVEMKGGQKRTSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+   + D+ +H +KDTP+V+GF+G   E PSP+++ E + I+ +V+ + + P  
Sbjct: 61  FPGYVLVNMELDDESWHLVKDTPRVMGFIGGKREKPSPISEKEADIILRRVQDSGETPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPF  FNG V+ V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KTMFEAGEMVRVTDGPFNDFNGTVEEVNYEKSKLRVAVSIFGRSTPVELDFTQVEK 176


>gi|15889255|ref|NP_354936.1| transcription antitermination protein NusG [Agrobacterium
           tumefaciens str. C58]
 gi|15157085|gb|AAK87721.1| transcription antitermination protein NusG [Agrobacterium
           tumefaciens str. C58]
          Length = 176

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/176 (61%), Positives = 137/176 (77%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLG+   P P+ D E + I+ QV+  V+RP SS
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDSKPVPIPDYEADRILGQVQEGVERPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL YNQVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYNQVEKV 176


>gi|92117079|ref|YP_576808.1| transcription antitermination protein NusG [Nitrobacter
           hamburgensis X14]
 gi|91799973|gb|ABE62348.1| transcription antitermination protein nusG [Nitrobacter
           hamburgensis X14]
          Length = 176

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 133/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK +ESI  +  + GL+ L  ++ +P+E+V  +R+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVLESIREQAKQRGLEDLFEQVLVPTEKVTEIRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|227821742|ref|YP_002825712.1| transcription antitermination protein NusG [Sinorhizobium fredii
           NGR234]
 gi|227340741|gb|ACP24959.1| possible transcription antitermination protein NusG [Sinorhizobium
           fredii NGR234]
          Length = 176

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/176 (61%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL HL  +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLGT   P P+ D E E I+ QV+  V+RP  S
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEAERILGQVQDGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VSFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176


>gi|209964025|ref|YP_002296940.1| transcription antitermination protein NusG [Rhodospirillum centenum
           SW]
 gi|209957491|gb|ACI98127.1| Transcription antitermination protein NusG, putative
           [Rhodospirillum centenum SW]
          Length = 176

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/176 (53%), Positives = 126/176 (71%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK  ++I  +  + GL+    EI +P+E +V VR+G KVN+ER+F
Sbjct: 1   MAARWYVVHVYSGFEKKVAQAIREKAGQKGLEEKFEEILVPTEEIVEVRRGAKVNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  + D+ +H +K+TPKV GFLG G  P P+++ E   I+NQV+  ++RP  S
Sbjct: 61  FPGYVLVKMELQDETWHLVKNTPKVTGFLGGGGKPQPISEGEAMRILNQVKEGIERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FEVGE+V V+DGPF SF G V+ VDE+K+RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 IQFEVGEQVRVTDGPFTSFTGYVEEVDEDKARVKVAVSIFGRATPVELEYTQVEKV 176


>gi|91977669|ref|YP_570328.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris BisB5]
 gi|91684125|gb|ABE40427.1| transcription antitermination protein nusG [Rhodopseudomonas
           palustris BisB5]
          Length = 176

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 131/176 (74%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P+++SE   I++QV+  V+RP  S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|86749396|ref|YP_485892.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris HaA2]
 gi|86572424|gb|ABD06981.1| transcription antitermination protein nusG [Rhodopseudomonas
           palustris HaA2]
          Length = 176

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|114328705|ref|YP_745862.1| transcription antitermination protein NusG [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316879|gb|ABI62939.1| transcription antitermination protein nusG [Granulibacter
           bethesdensis CGDNIH1]
          Length = 176

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 127/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK  + I     ++GL     EI +PSE VV +R+G+KVN+ER+F
Sbjct: 1   MAKRWYVVHVYSGFEKKIAQQIRETAVQNGLIDHFDEILVPSEEVVELRRGQKVNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD  +H ++DTP+V GFLG+   PSP++++E + I+ Q +  V+RP  +
Sbjct: 61  FPGYVLVKMELTDDTWHLVRDTPRVTGFLGSRTRPSPISEAEADRILRQAQEGVERPRPA 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE++ V+DGPF SFNG+V+ VDEEK RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VLFEVGEQIRVADGPFTSFNGVVEEVDEEKGRVKVSVSIFGRSTPVELEYGQVEKV 176


>gi|90020566|ref|YP_526393.1| transcription antitermination protein nusG [Saccharophagus
           degradans 2-40]
 gi|89950166|gb|ABD80181.1| transcription antitermination protein nusG [Saccharophagus
           degradans 2-40]
          Length = 177

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/177 (44%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EKK   +I  R+  + +     ++ +P+E V+ +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKKVAAAIKERIELNNMQDSFGDVLVPTEEVIEIRAGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD  +H +K+TP+V+GF+G   + P+P+T+ E + I+ +V+ +  +P  
Sbjct: 61  FPGYVLVQMELTDDAWHLVKETPRVMGFIGGKADRPAPITEKEAQLILQRVDDSADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V+DGPF  FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK+
Sbjct: 121 KTLFEPGEMVRVTDGPFNDFNGVVEEVNYEKSKLQVAVLIFGRSTPVELEFGQVEKV 177


>gi|299135273|ref|ZP_07028464.1| NusG antitermination factor [Afipia sp. 1NLS2]
 gi|298590250|gb|EFI50454.1| NusG antitermination factor [Afipia sp. 1NLS2]
          Length = 176

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I++QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE V V+DGPFASF+G+V+ VD+ +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDDARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|190891342|ref|YP_001977884.1| transcription antitermination protein [Rhizobium etli CIAT 652]
 gi|190696621|gb|ACE90706.1| transcription antitermination protein [Rhizobium etli CIAT 652]
 gi|327194521|gb|EGE61379.1| transcription antitermination protein [Rhizobium etli CNPAF512]
          Length = 176

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/176 (60%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  E I  +  + GL+HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLG+   P P+ D E E I+ QV+  V+RP +S
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176


>gi|254785051|ref|YP_003072479.1| transcription termination/antitermination factor NusG
           [Teredinibacter turnerae T7901]
 gi|237686030|gb|ACR13294.1| transcription termination/antitermination factor NusG
           [Teredinibacter turnerae T7901]
          Length = 177

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EKK   ++  R+   G+     E+ +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKKVATALKERIELYGMQDSFGEVLVPTEEVVEMRGGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+TD E E I+ +V+ +  +P  
Sbjct: 61  FPGYVLVQMELNDDAWHLVKETPRVMGFIGGKADKPAPITDKEAELILQRVDDSADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176


>gi|83594032|ref|YP_427784.1| transcription antitermination protein NusG [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576946|gb|ABC23497.1| transcription antitermination protein nusG [Rhodospirillum rubrum
           ATCC 11170]
          Length = 176

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 93/176 (52%), Positives = 131/176 (74%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWY++ VYS  E K  +SI  +  + G+D  + E+ +P+E +V VR+G KVN+ER+F
Sbjct: 1   MTARWYVIHVYSGFENKVAQSIREQAIQKGMDSRIEEVLVPTEEIVEVRRGAKVNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  ++D+ +H +K+T KV GFLG    PSP++D E E I++QV+  ++RP  S
Sbjct: 61  FPGYVLVKMDLSDETWHLVKNTAKVTGFLGGRGRPSPISDREAERILHQVQEGIERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F+VGE+V V DGPF SFNG+V++VDEEK+R+ V V IFGR TPVEL Y+QVEK+
Sbjct: 121 ITFDVGEQVRVCDGPFTSFNGMVEDVDEEKARLKVSVSIFGRSTPVELEYSQVEKV 176


>gi|58039757|ref|YP_191721.1| transcription antitermination protein NusG [Gluconobacter oxydans
           621H]
 gi|58002171|gb|AAW61065.1| Transcription antitermination protein NusG [Gluconobacter oxydans
           621H]
          Length = 176

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 127/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK    I  + ++ GL     +I +PSE V  +R+GRKVN+ER+F
Sbjct: 1   MAKRWYVVHVYSGFEKKIASHIQEQAAQKGLSDHFEQILVPSEDVTEMRRGRKVNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H +KDTPKV GFLGT   P+P+T +E + IM Q +  V+RP SS
Sbjct: 61  FPGYVLVKMELTDEAWHLVKDTPKVTGFLGTRNRPTPITAAEADRIMKQAQEGVERPRSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V V+DGPF SF G++++VD+E+ R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 LSFEIGEQVRVADGPFTSFTGMIEDVDDERQRLKVSVSIFGRSTPVDLDFTQVEKL 176


>gi|86357292|ref|YP_469184.1| transcription antitermination protein NusG [Rhizobium etli CFN 42]
 gi|86281394|gb|ABC90457.1| transcription antitermination protein [Rhizobium etli CFN 42]
          Length = 176

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 107/176 (60%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  E I  +  + GL+HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+ YH IK+TPKV GFLG+   P P+ D E E I+ QV+  V+RP +S
Sbjct: 61  FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 VTFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176


>gi|222148352|ref|YP_002549309.1| transcription antitermination protein NusG [Agrobacterium vitis S4]
 gi|221735340|gb|ACM36303.1| transcription antitermination protein [Agrobacterium vitis S4]
          Length = 176

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 108/176 (61%), Positives = 138/176 (78%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEKARQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+VYH IK+TPKV GFLG+   P P+ D E + I+ QV+  V+RP SS
Sbjct: 61  FPGYVLVRANLTDEVYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+
Sbjct: 121 LSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176


>gi|163759401|ref|ZP_02166487.1| transcription antitermination protein NusG [Hoeflea phototrophica
           DFL-43]
 gi|162283805|gb|EDQ34090.1| transcription antitermination protein NusG [Hoeflea phototrophica
           DFL-43]
          Length = 176

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 105/176 (59%), Positives = 134/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  +SI  +  + GL HL  +I +P E+VV VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVADSIEEQARQKGLSHLFEKILVPVEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYV+++A +TD+ +H IK+TPKV GFLG+   P P+ DSE E I+ QV+  V+RP  S
Sbjct: 61  FPGYVMVRADLTDEAFHLIKNTPKVTGFLGSDSKPVPIPDSEAERILTQVQEGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 IAFEIGEQVRVSDGPFASFNGTVQEVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176


>gi|209548922|ref|YP_002280839.1| transcription antitermination protein NusG [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209534678|gb|ACI54613.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 176

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 105/176 (59%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  E I  +  + GL+HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYV+++A +TD+ YH IK+TPKV GFLG+   P P+ D E E I+ QV+  V+RP +S
Sbjct: 61  FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDHEAERILGQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176


>gi|85715149|ref|ZP_01046133.1| transcription antitermination protein NusG [Nitrobacter sp.
           Nb-311A]
 gi|85698064|gb|EAQ35937.1| transcription antitermination protein NusG [Nitrobacter sp.
           Nb-311A]
          Length = 176

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   IM+QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|116251526|ref|YP_767364.1| transcription antitermination protein NusG [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|218677875|ref|ZP_03525772.1| transcription antitermination protein NusG [Rhizobium etli CIAT
           894]
 gi|241204152|ref|YP_002975248.1| transcription antitermination protein NusG [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|115256174|emb|CAK07255.1| putative transcription antitermination protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240858042|gb|ACS55709.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 176

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 105/176 (59%), Positives = 135/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  E I  +  + GL+HL  +I +P+E+VV VR+GRKV+SER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYV+++A +TD+ YH IK+TPKV GFLG+   P P+ D E E I+ QV+  V+RP +S
Sbjct: 61  FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176


>gi|312115370|ref|YP_004012966.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
 gi|311220499|gb|ADP71867.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
          Length = 176

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 100/176 (56%), Positives = 128/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  +SI  R + +GLD    +I +P E VV VR+GRKV +ER+F
Sbjct: 1   MTKRWYIVHAYSNFEKKVADSIRERAAAAGLDECFEDIVVPMEEVVEVRRGRKVATERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  M D+ +  IK+TPKV GFLG    P P+++ E + I+NQV+  V+RP  S
Sbjct: 61  FPGYVLVKMDMNDRAFLLIKNTPKVTGFLGADNKPQPISEIEAQRILNQVKEGVERPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V V+DGPFASF+G V+ VDEE++R+ V V IFGR TPVEL Y QVEKI
Sbjct: 121 ISFEIGEQVRVADGPFASFSGHVEEVDEERARLKVAVSIFGRATPVELEYAQVEKI 176


>gi|192359543|ref|YP_001981196.1| transcription termination/antitermination factor NusG [Cellvibrio
           japonicus Ueda107]
 gi|190685708|gb|ACE83386.1| transcription termination/antitermination factor NusG [Cellvibrio
           japonicus Ueda107]
          Length = 177

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EKK   S+  R++  G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKKVAASLRERVALHGMEDSFGEILVPTEEVVEMRGGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +KDTP+V+GF+G   + P+P+T+ E E I+ +V+ ++++P  
Sbjct: 61  FPGYVLVQMELNDDTWHLVKDTPRVMGFIGGKADQPAPITEKEAEAILRRVDDSMEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ +K+R+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKNRLRVAVLIFGRSTPVELEFGQVEK 176


>gi|170750243|ref|YP_001756503.1| NusG antitermination factor [Methylobacterium radiotolerans JCM
           2831]
 gi|170656765|gb|ACB25820.1| NusG antitermination factor [Methylobacterium radiotolerans JCM
           2831]
          Length = 177

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 127/176 (72%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN E K  +SI  + ++ GL  L  E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+K  +TD+VYH IK+TPKV GFLG  +  P P+ D+E E I  QV   V RP  
Sbjct: 61  FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGVDRPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           S+ FE+GE V V+DGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK
Sbjct: 121 SISFEIGETVRVADGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYAQVEK 176


>gi|108758111|ref|YP_631275.1| transcription termination/antitermination factor NusG [Myxococcus
           xanthus DK 1622]
 gi|108461991|gb|ABF87176.1| transcription termination/antitermination factor NusG [Myxococcus
           xanthus DK 1622]
          Length = 180

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YSN E +A +S+  ++   GL     EI IP E+VV + KG K  S R+F
Sbjct: 1   MAMKWYVVHTYSNFENQAKKSLEEKVRLEGLQDQFGEILIPMEQVVEMVKGEKKTSRRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           FPGY+ ++  + D+  H +K+TPK+ GF GT   +NP P++D E+  + +Q+     +P 
Sbjct: 61  FPGYIFVQMELNDRTLHLVKNTPKITGFPGTVQNQNPLPISDQEVARLTSQISEGTLKPK 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             V F+ G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK
Sbjct: 121 PKVQFDDGDTVRVIDGPFANFNGTVEEVNAEKGRVKVLVSIFGRATPVELDFMQVEK 177


>gi|117924143|ref|YP_864760.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1]
 gi|117607899|gb|ABK43354.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1]
          Length = 176

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 91/176 (51%), Positives = 124/176 (70%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY++  YS  EK+   S+  ++  +G+     EI +PSE V+ +RKG KV SER+F
Sbjct: 1   MSKRWYVIHAYSGFEKRVKSSLEEKVRLTGMSKYFDEILVPSEEVIELRKGAKVTSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  + D+ +H +KD PKV GFLG G  P P++D E+E I+ QVE  +++P   
Sbjct: 61  FPGYVLVKMDLNDETWHLVKDIPKVAGFLGGGGRPQPLSDREVEKILQQVETGMEKPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V F VGE+V V+DGPF SFNG+V+ V+E+KSR+ V V IFGR TPVEL + QVEKI
Sbjct: 121 VSFAVGEQVRVTDGPFVSFNGVVEEVEEDKSRLKVSVSIFGRATPVELDFIQVEKI 176


>gi|147676640|ref|YP_001210855.1| transcription antiterminator [Pelotomaculum thermopropionicum SI]
 gi|146272737|dbj|BAF58486.1| transcription antiterminator [Pelotomaculum thermopropionicum SI]
          Length = 175

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K   ++  R+    ++  +  I +P E  V ++ G+K  S+R+ 
Sbjct: 1   MEKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ +MTD  ++ +++TP V GF+G+G  P P+ D+E   I+ Q+   V+ P + 
Sbjct: 61  FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQMG--VEEPRTR 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V F VGE + V  GPF +F G ++ ++ EKS+V V + +FGR TPVEL + QVEKI+
Sbjct: 119 VDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKII 175


>gi|75675537|ref|YP_317958.1| transcription antitermination protein NusG [Nitrobacter
           winogradskyi Nb-255]
 gi|74420407|gb|ABA04606.1| transcription antitermination protein nusG [Nitrobacter
           winogradskyi Nb-255]
          Length = 176

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 132/176 (75%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN EKK  ESI  +  + GL+ L  ++ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   IM+QV+  V+RP +S
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>gi|307946270|ref|ZP_07661605.1| transcription termination/antitermination factor NusG [Roseibium
           sp. TrichSKD4]
 gi|307769934|gb|EFO29160.1| transcription termination/antitermination factor NusG [Roseibium
           sp. TrichSKD4]
          Length = 177

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 100/176 (56%), Positives = 127/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL  L  EI +P E+V  VR+GRKV +ER+F
Sbjct: 1   MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVTEVRRGRKVEAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MT++ +H IKDTPKV GFLG  + P P+ + E   I+NQV+  V RP  S
Sbjct: 61  FPGYVLVKMDMTNEAFHLIKDTPKVTGFLGADQKPIPIPEREALQIINQVQEGVDRPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176


>gi|329114824|ref|ZP_08243581.1| Transcription antitermination protein NusG [Acetobacter pomorum
           DM001]
 gi|326695955|gb|EGE47639.1| Transcription antitermination protein NusG [Acetobacter pomorum
           DM001]
          Length = 188

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 128/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK  + I     + GL   + EI +PSE V+ VR+G+KVN+ER+F
Sbjct: 13  MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 72

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MTD+ +H +KDTPKV GFLGT   P+P++ +E E I+ Q E  VQ P S+
Sbjct: 73  FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 132

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 133 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 188


>gi|296131823|ref|YP_003639070.1| NusG antitermination factor [Thermincola sp. JR]
 gi|296030401|gb|ADG81169.1| NusG antitermination factor [Thermincola potens JR]
          Length = 174

 Score =  184 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 110/176 (62%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++  YS  E K   ++  R+    +   +  I +P E  V ++ G+K  ++R+ 
Sbjct: 1   MEKQWYVIHTYSGYENKVKANLEKRIESMNMGDKIFRILVPMEDEVEIKDGKKKVAKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ +MTD  ++ +++T  V GF+G+G  P P+ ++E+ HI+ Q+   V+ P + 
Sbjct: 61  FPGYVLVEMIMTDDSWYVVRNTSGVTGFVGSGSKPIPLHEAEVRHILRQMG--VEEPRAK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+G+ V V+ GPF +F G ++ +  +K ++ V V +FGR TPVEL Y QVE++
Sbjct: 119 IDFELGQNVRVTSGPFENFIGSIEEIYPDKGKIKVLVSMFGRETPVELEYGQVERL 174


>gi|163853396|ref|YP_001641439.1| transcription termination/antitermination factor NusG
           [Methylobacterium extorquens PA1]
 gi|188583667|ref|YP_001927112.1| NusG antitermination factor [Methylobacterium populi BJ001]
 gi|218532254|ref|YP_002423070.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240140814|ref|YP_002965294.1| transcription termination factor [Methylobacterium extorquens AM1]
 gi|254563324|ref|YP_003070419.1| transcription termination factor [Methylobacterium extorquens DM4]
 gi|163665001|gb|ABY32368.1| transcription termination/antitermination factor NusG
           [Methylobacterium extorquens PA1]
 gi|179347165|gb|ACB82577.1| NusG antitermination factor [Methylobacterium populi BJ001]
 gi|218524557|gb|ACK85142.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240010791|gb|ACS42017.1| transcription termination factor [Methylobacterium extorquens AM1]
 gi|254270602|emb|CAX26605.1| transcription termination factor [Methylobacterium extorquens DM4]
          Length = 177

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 99/177 (55%), Positives = 128/177 (72%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN E K  +SI  + ++ GL  L  E+ +P+E+V  VR+GRKV++ER+F
Sbjct: 1   MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+K  +TD+VYH IK+TPKV GFLG  +  P P+ D+E E I  QV+  V RP  
Sbjct: 61  FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKAKPVPIPDAEAERIKGQVQEGVDRPKH 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +V FE+GE V VSDGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 TVSFEIGETVRVSDGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYGQVEKV 177


>gi|254501154|ref|ZP_05113305.1| transcription termination/antitermination factor NusG [Labrenzia
           alexandrii DFL-11]
 gi|222437225|gb|EEE43904.1| transcription termination/antitermination factor NusG [Labrenzia
           alexandrii DFL-11]
          Length = 176

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 100/176 (56%), Positives = 129/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL  L  EI +P E+VV VR+GRKV++ER+F
Sbjct: 1   MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MT++ +H I+DTPKV GFLG  + P P+ + E   I+NQV+  V RP  S
Sbjct: 61  FPGYVLVKMDMTNEAFHLIRDTPKVTGFLGADQKPMPIPEKEALRIINQVQEGVDRPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176


>gi|258541216|ref|YP_003186649.1| transcription antitermination protein NusG [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632294|dbj|BAH98269.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256635351|dbj|BAI01320.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256638406|dbj|BAI04368.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256641460|dbj|BAI07415.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256644515|dbj|BAI10463.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256647570|dbj|BAI13511.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256650623|dbj|BAI16557.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256653614|dbj|BAI19541.1| transcription antitermination factor NusG [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 176

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 128/176 (72%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK  + I     + GL   + EI +PSE V+ VR+G+KVN+ER+F
Sbjct: 1   MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MTD+ +H +KDTPKV GFLGT   P+P++ +E E I+ Q E  VQ P S+
Sbjct: 61  FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 176


>gi|114319607|ref|YP_741290.1| transcription antitermination protein nusG [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226001|gb|ABI55800.1| transcription antitermination protein nusG [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 177

 Score =  183 bits (464), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 126/176 (71%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++  YS  EK+   S+  R+ R+G++    EI +P+E VV +R+G+K  SER+F
Sbjct: 1   MAKRWYVIHAYSGFEKQVKRSLEERIKRAGMEDKFGEILVPTEEVVEMREGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D+ +H +K+ P+V+GF+G   + P+P++D E E I+++V+   ++P  
Sbjct: 61  FPGYVLVQMELDDETWHLVKEVPRVMGFIGGRSDRPAPISDREAEQILDRVKEGAEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEMVRVTDGPFADFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFDQVEK 176


>gi|83858578|ref|ZP_00952100.1| transcription antitermination protein NusG [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853401|gb|EAP91253.1| transcription antitermination protein NusG [Oceanicaulis alexandrii
           HTCC2633]
          Length = 177

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 125/176 (71%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYIV  YSN EKK  E+I    +  GL+    E+ +P+E VV VR+GRKVN+ER++
Sbjct: 1   MAAKWYIVHAYSNFEKKVAEAIKAEAALQGLEDKFEEVLVPTEEVVEVRRGRKVNAERKY 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MTD+ YH +KDTP+V GFLG+G  P+PV ++E+  IM Q+E   +RP  +
Sbjct: 61  FPGYVLVKMDMTDEAYHLVKDTPRVTGFLGSGRRPTPVPEAEVRRIMGQMEEDAERPRPT 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V +EVGE V V DG F SFNG+V+ VD+EK  + V + IFGR TPVEL Y QVEKI
Sbjct: 121 VSYEVGETVRVIDGHFQSFNGLVEEVDDEKGVLKVAINIFGRATPVELEYAQVEKI 176


>gi|220921885|ref|YP_002497186.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219946491|gb|ACL56883.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 177

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/177 (57%), Positives = 129/177 (72%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN E K  +SI  + ++ GL     E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+K  +TD+VYH IK+TPKV GFLG  +  P P+ D+E E I  QV    +RP +
Sbjct: 61  FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGTERPKA 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ FEVGE V VSDGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 SISFEVGESVRVSDGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177


>gi|229592915|ref|YP_002875034.1| transcription antitermination protein NusG [Pseudomonas fluorescens
           SBW25]
 gi|312963379|ref|ZP_07777862.1| transcription termination/antitermination factor [Pseudomonas
           fluorescens WH6]
 gi|229364781|emb|CAY52786.1| transcription antitermination protein [Pseudomonas fluorescens
           SBW25]
 gi|311282459|gb|EFQ61057.1| transcription termination/antitermination factor [Pseudomonas
           fluorescens WH6]
          Length = 177

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177


>gi|296117260|ref|ZP_06835852.1| transcription antitermination protein NusG [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976213|gb|EFG82999.1| transcription antitermination protein NusG [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 176

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 124/176 (70%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++ VYS  EKK  + I  + ++ GL     EI +PSE V  VR+G+KVNSER+F
Sbjct: 1   MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEVRRGQKVNSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+   +TD+ +H +KDTPKV GFLG+   PSP+  +E E IM Q +  V+R   S
Sbjct: 61  FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTKPSPIPKAEAERIMKQAQEGVERVRPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE++ V+DGPF SFNG ++ VDEEK R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VTFEVGEQIRVADGPFTSFNGTIEEVDEEKGRLTVSVSIFGRSTPVDLEYNQVEKV 176


>gi|116625380|ref|YP_827536.1| transcription antitermination protein nusG [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228542|gb|ABJ87251.1| transcription antitermination protein nusG [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 239

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/175 (41%), Positives = 110/175 (62%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI+  YS  E K  ES+  R    G    + +I IP+E VV +R G+KV S+R  +
Sbjct: 65  AKKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKRLVY 124

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++  M D ++H +K+TP+V GF+G G +P P++  E+  I+ +  ++ +RP   +
Sbjct: 125 PGYVLVEMEMNDALWHEVKNTPRVTGFVGGGNSPVPLSADEVNSILYRQASSAERPRPKM 184

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE  + V + DGPFA+F+G V  V+ E+  + V V IFGR TPVEL + QVEK+
Sbjct: 185 TFEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239


>gi|224370702|ref|YP_002604866.1| NusG [Desulfobacterium autotrophicum HRM2]
 gi|223693419|gb|ACN16702.1| NusG [Desulfobacterium autotrophicum HRM2]
          Length = 176

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 111/176 (63%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+V VYS  E K   ++  +++ SG      EI +P+E VV +  G+K  S R+F
Sbjct: 1   MSLKWYVVHVYSGFEHKVKLALEDKVANSGCADSFDEILVPTEHVVELVNGKKRESSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY+L++  + D+ +H +  TPKV GFLG    P+P++D+E   I+ ++E    +P   
Sbjct: 61  YPGYILVRMSLNDETWHIVNSTPKVTGFLGGKNKPAPISDAEAAAIVERMEQGKNKPQPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +FE G+ V V+DGPF +FNG V+  + +K +V V V IFGR TPVEL + QV KI
Sbjct: 121 YYFEPGDDVRVTDGPFTNFNGTVEESNPDKGKVRVLVSIFGRATPVELDFVQVTKI 176


>gi|170738717|ref|YP_001767372.1| NusG antitermination factor [Methylobacterium sp. 4-46]
 gi|168192991|gb|ACA14938.1| NusG antitermination factor [Methylobacterium sp. 4-46]
          Length = 177

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/177 (56%), Positives = 130/177 (73%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYIV  YSN E K  +SI  + ++ GL     E+ +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+K  +TD+VYH IK+TPKV GFLG  +  P P+ D+E E I  QV+   +RP +
Sbjct: 61  FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVQEGTERPKA 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+
Sbjct: 121 SISFEVGESVRVADGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177


>gi|114704471|ref|ZP_01437379.1| transcription antitermination protein NusG [Fulvimarina pelagi
           HTCC2506]
 gi|114539256|gb|EAU42376.1| transcription antitermination protein NusG [Fulvimarina pelagi
           HTCC2506]
          Length = 176

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/176 (56%), Positives = 129/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL     +I +P+E VV VR+GRKVN+ER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTENVVEVRRGRKVNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KA +TDKV+  IK+TPKV GFLG    P P+TD E + I+N ++  V RP  +
Sbjct: 61  FPGYVLVKAELTDKVFSMIKNTPKVTGFLGPDNRPVPITDKEADQILNHIQEGVDRPKPT 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F++GE+V VSDGPFASFNGIV+ +D E+SR+ VEV IFGR TPV+L + QVEK+
Sbjct: 121 IMFDIGEQVRVSDGPFASFNGIVQEIDGERSRLKVEVSIFGRATPVDLEFGQVEKV 176


>gi|27380527|ref|NP_772056.1| transcription antitermination protein NusG [Bradyrhizobium
           japonicum USDA 110]
 gi|27353691|dbj|BAC50681.1| transcription antitermination protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 184

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 129/174 (74%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIV  YSN EKK  ESI  +  + GL+ L   + +P+E+V  VR+GRK+++ER+FFP
Sbjct: 11  KRWYIVHAYSNFEKKVAESIREQAKQRGLEELFELVLVPTEKVTEVRRGRKIDAERKFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  +TD+ +H IK+TPKV GFLG    P P++++E   I++QV+  V+RP +SV 
Sbjct: 71  GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVS 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+
Sbjct: 131 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 184


>gi|88704396|ref|ZP_01102110.1| Bacterial transcription antitermination protein NusG
           [Congregibacter litoralis KT71]
 gi|88701447|gb|EAQ98552.1| Bacterial transcription antitermination protein NusG
           [Congregibacter litoralis KT71]
          Length = 177

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EKK   ++  R+   G+     ++ +P+E VV +R G+K  SER+F
Sbjct: 1   MAMRWYVVHAYSGYEKKVATALQERIELHGMGDRFGDVLVPTEEVVEMRAGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+TD+E + I++++E   + P  
Sbjct: 61  FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176


>gi|114570357|ref|YP_757037.1| transcription antitermination protein nusG [Maricaulis maris MCS10]
 gi|114340819|gb|ABI66099.1| transcription antitermination protein nusG [Maricaulis maris MCS10]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 94/176 (53%), Positives = 126/176 (71%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WYIV  YSN EKK  ++I    S  GL+    EI +P+E VV VRKGRK+N+ER++
Sbjct: 1   MSAKWYIVHAYSNFEKKVADAIRIEASIKGLEDKFEEILVPTEDVVEVRKGRKINAERKY 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MTD+ YH +  TPKV GFLG+G+ P PV+++E++ I+ Q+E   +RP  +
Sbjct: 61  FPGYVLVKMDMTDQAYHLVTSTPKVTGFLGSGKKPIPVSENEVKRILGQMEEDAERPRPT 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V +E+GE V V DG F SFNG+V+ VD+E  R+ V + IFGR TPVEL Y QVEKI
Sbjct: 121 VSYEIGETVNVIDGHFQSFNGVVEEVDDENGRLKVAINIFGRATPVELEYAQVEKI 176


>gi|254483533|ref|ZP_05096759.1| transcription termination/antitermination factor NusG [marine gamma
           proteobacterium HTCC2148]
 gi|214036190|gb|EEB76871.1| transcription termination/antitermination factor NusG [marine gamma
           proteobacterium HTCC2148]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EKK   ++  R+   G+     E+ +P+E VV +R G+K  SER+F
Sbjct: 1   MAMRWYVVHAYSGYEKKVATALQERIELHGMQDRFGEVLVPTEEVVEMRGGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+T++E   I+ +VE  V+ P  
Sbjct: 61  FPGYVLVQMELGDDSWHLVKETPRVMGFIGGTADTPAPITEAEASAILQRVEQGVEAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176


>gi|16127435|ref|NP_421999.1| transcription antitermination protein NusG [Caulobacter crescentus
           CB15]
 gi|221236245|ref|YP_002518682.1| transcription antitermination protein NusG [Caulobacter crescentus
           NA1000]
 gi|295688156|ref|YP_003591849.1| NusG antitermination factor [Caulobacter segnis ATCC 21756]
 gi|13424883|gb|AAK25167.1| transcription antitermination protein NusG [Caulobacter crescentus
           CB15]
 gi|220965418|gb|ACL96774.1| transcription antitermination protein nusG [Caulobacter crescentus
           NA1000]
 gi|295430059|gb|ADG09231.1| NusG antitermination factor [Caulobacter segnis ATCC 21756]
          Length = 185

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 100/174 (57%), Positives = 128/174 (73%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  ESI  +    GL+   +EI +P+E VV +R+GRKVN+ER+FFP
Sbjct: 11  HKWYIVHAYSNFEKKVAESIREQAKNQGLEENFSEILVPTEDVVEIRRGRKVNAERKFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  ++D+ YH IK+TPKV GFLG+G  P PV++ E++ I+  +E  V  P + V 
Sbjct: 71  GYVLVKMNLSDEAYHLIKNTPKVTGFLGSGSKPMPVSEKEVQRIIGTIEEGVAAPKAVVL 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +EVGE V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL YNQVEKI
Sbjct: 131 YEVGENVRVTDGPFASFNGSVEYVDEEKARLRVTVSIFGRATPVELEYNQVEKI 184


>gi|288942084|ref|YP_003444324.1| NusG antitermination factor [Allochromatium vinosum DSM 180]
 gi|288897456|gb|ADC63292.1| NusG antitermination factor [Allochromatium vinosum DSM 180]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 124/177 (70%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY++  YS  E +   S+   + R+GLD L  +I +P+E VV +R G++  SER+F
Sbjct: 1   MSKRWYVIHAYSGFEGQVKRSLEDHVKRAGLDELFGQILVPTEEVVEMRGGQQRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+   +TD+ +H +K+ PKV+GF+G  G+ P+P+ DS+ + I+ +++   ++P  
Sbjct: 61  FPGYVLVHMELTDETWHLVKNVPKVMGFIGGTGDRPAPIPDSQADVILQRLQEGGEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V +E GE V V+DGPF  FNG+V++VD +KSRV V V+IFGR TPVEL + QVEK+
Sbjct: 121 KVLYEPGEVVRVTDGPFTDFNGVVEDVDYDKSRVKVSVLIFGRSTPVELEFAQVEKV 177


>gi|53804629|ref|YP_113536.1| transcription antitermination protein NusG [Methylococcus
           capsulatus str. Bath]
 gi|53758390|gb|AAU92681.1| transcription antitermination protein NusG [Methylococcus
           capsulatus str. Bath]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 126/176 (71%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++Q YSN E +   S+  R++R+GL+H   +I +P+E V+ +R+G++   ER+F
Sbjct: 1   MALRWYVIQAYSNFENRVKRSLEERIARAGLEHYFGKILVPTEEVLEMRQGQQRKGERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H ++D P+V+GF+G   ++P+P++D+E E I+ +VE  V++P  
Sbjct: 61  FPGYVLVQMELNDDTWHLVRDVPRVLGFVGGTPDHPAPISDAEAEAILARVEEGVKKPKH 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V +EVGE V V DGPF  FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLYEVGEVVRVIDGPFKDFNGVVEEVNYEKSKLRVSVLIFGRSTPVELEFGQVEK 176


>gi|220935504|ref|YP_002514403.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996814|gb|ACL73416.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E     S+  R+ R G+     EI +P+E VV +R G+K  SER+F
Sbjct: 1   MALRWYVVHAYSGFENHVKRSLEERIERYGMQDKFGEILVPTEEVVEMRDGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +KD PKV+GF+G + + P+P++D E ++I+ +++   ++P  
Sbjct: 61  FPGYVLVQMELDDDTWHLVKDVPKVLGFIGASADKPTPISDKEAQNILQRMQEGAEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE GE V V DGPF  FNG+V+ V+ +K+R+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEAGEVVRVIDGPFNDFNGVVEEVNYDKNRLLVAVQIFGRSTPVELEFHQVEK 176


>gi|218779773|ref|YP_002431091.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
 gi|218761157|gb|ACL03623.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
          Length = 176

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 112/176 (63%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V VYS  E K   ++  R++ S       ++ IP+E+VV + KG++  S+R+F
Sbjct: 1   MALKWYVVHVYSGFENKVKTALEERIASSRFSDKFGQVLIPTEQVVELVKGKRKTSQRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY+L++  + D+ +H + DT KV GFLG    PSP++D E   I++Q+EA   +P   
Sbjct: 61  YPGYILVQMHLDDETWHLVNDTAKVTGFLGGRNKPSPLSDEEASRIVDQIEAGKLKPQPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             FE G+ V V DGPF +FNG V+ V+ EK ++ V V IFGR TPVEL + QV K+
Sbjct: 121 YLFETGDEVRVIDGPFTNFNGSVEAVNPEKGKIKVMVSIFGRATPVELDFVQVTKL 176


>gi|88799206|ref|ZP_01114785.1| transcription antitermination protein NusG [Reinekea sp. MED297]
 gi|88777965|gb|EAR09161.1| transcription antitermination protein NusG [Reinekea sp. MED297]
          Length = 177

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK+   S+  ++    +     EI +P+E VV +R G+K  SER+F
Sbjct: 1   MSKRWYVVHAYSGYEKRVAGSLKEQVELQSMQDQFGEILVPTESVVEMRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D+ +H +KDTP+V+GF+G   E P+P+T  E E I+ +V+    +P  
Sbjct: 61  YPGYVLVEMEMNDETWHLVKDTPRVMGFIGGTAEKPAPLTTREAEAILQRVKDGADKPTQ 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              +E GE V V DGPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTIYEPGEVVRVIDGPFADFNGTVEKVNYEKSRLQVSVSIFGRATPVELEFVQVEK 176


>gi|77461312|ref|YP_350819.1| transcription antitermination protein NusG [Pseudomonas fluorescens
           Pf0-1]
 gi|77385315|gb|ABA76828.1| transcription antitermination protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 177

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGETVRVNDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177


>gi|302189265|ref|ZP_07265938.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. syringae 642]
          Length = 177

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E + I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEADAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176


>gi|70732893|ref|YP_262662.1| transcription antitermination protein NusG [Pseudomonas fluorescens
           Pf-5]
 gi|71734301|ref|YP_276718.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257483173|ref|ZP_05637214.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289623861|ref|ZP_06456815.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648954|ref|ZP_06480297.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298489108|ref|ZP_07007130.1| Transcription antitermination protein NusG [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|68347192|gb|AAY94798.1| transcription termination/antitermination factor NusG [Pseudomonas
           fluorescens Pf-5]
 gi|71554854|gb|AAZ34065.1| transcription termination/antitermination factor NusG [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298156420|gb|EFH97518.1| Transcription antitermination protein NusG [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320322334|gb|EFW78428.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331992|gb|EFW87928.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869443|gb|EGH04152.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330879351|gb|EGH13500.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330988294|gb|EGH86397.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331012400|gb|EGH92456.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 177

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176


>gi|319944817|ref|ZP_08019080.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lautropia mirabilis ATCC 51599]
 gi|319741931|gb|EFV94355.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lautropia mirabilis ATCC 51599]
          Length = 177

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK    +I  R+ R+G+  L  +I +P+E VV ++ G++  +ERRF
Sbjct: 1   MSKRWYVVHAYSGMEKSVGRAIRERVERAGMQDLFGQILVPTEEVVEMKNGQRSITERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D  +H +K+T KV GF+G  G  P+ ++ +E++ IMNQ+   V++P  
Sbjct: 61  FPGYVLVEMEMNDDTWHLVKNTNKVTGFVGGSGNRPAAISQAEVDKIMNQMAEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+GE V V +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 KTLFEIGEMVRVKEGPFADFNGNVEEVNYEKSRLTVSVTIFGRATPVELEFGQVEKL 177


>gi|254516893|ref|ZP_05128951.1| transcription termination/antitermination factor NusG [gamma
           proteobacterium NOR5-3]
 gi|219674398|gb|EED30766.1| transcription termination/antitermination factor NusG [gamma
           proteobacterium NOR5-3]
          Length = 177

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EKK   ++  R+   G+     ++ +P+E VV +R G+K  SER+F
Sbjct: 1   MAMRWYVVHAYSGYEKKVATALKERIELHGMTDRFGDVLVPTEEVVEMRGGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+TD+E + I++++E   + P  
Sbjct: 61  FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGEMVRVVDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176


>gi|95930698|ref|ZP_01313431.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684]
 gi|95133178|gb|EAT14844.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684]
          Length = 177

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 112/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY V  YS  E K   ++  R+   G + L  E+ +PSE VV ++ G +  S R+F
Sbjct: 1   MAMQWYGVHTYSGFENKVKLNLEERIKMLGAEDLFGEVLVPSEVVVELKNGERKTSTRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L++  + ++ +H +KDT KV GF+G G  P P+ D+E+E I  ++E   +RP   
Sbjct: 61  FPGYILVQMELNNETWHIVKDTAKVTGFVGGGTTPPPIPDAEVEKITARMEEGAERPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V +EVGE V V DGPF +F GIV++V  +K ++ V V IFGRVTPVEL + QVEK
Sbjct: 121 VQYEVGETVRVVDGPFLNFTGIVEDVKPDKGKLKVMVSIFGRVTPVELDFIQVEK 175


>gi|89893200|ref|YP_516687.1| hypothetical protein DSY0454 [Desulfitobacterium hafniense Y51]
 gi|219666473|ref|YP_002456908.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2]
 gi|89332648|dbj|BAE82243.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536733|gb|ACL18472.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2]
          Length = 175

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT  WY++  YS  E K   ++  R+    ++  +  + +P E  + ++ G+K  ++R+ 
Sbjct: 1   MTKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEIKNGKKKIAKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++  MTD  ++ +++TP V GF+GTG  P P+ D E++ I+ Q+   V+   + 
Sbjct: 61  FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGTGAKPIPLLDHEVQAILKQMG--VEEVRTR 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V + VG+ V V  GPF  F   V+ + E+K ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 VDYTVGQNVRVISGPFKDFIASVREILEDKGKLRVSVSMFGRETPVELDFAQVEKV 174


>gi|237797420|ref|ZP_04585881.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|330962537|gb|EGH62797.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. maculicola str. ES4326]
 gi|331020270|gb|EGI00327.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 177

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177


>gi|148260034|ref|YP_001234161.1| transcription antitermination protein NusG [Acidiphilium cryptum
           JF-5]
 gi|326403010|ref|YP_004283091.1| transcription antitermination protein NusG [Acidiphilium multivorum
           AIU301]
 gi|146401715|gb|ABQ30242.1| transcription antitermination protein nusG [Acidiphilium cryptum
           JF-5]
 gi|325049871|dbj|BAJ80209.1| transcription antitermination protein NusG [Acidiphilium multivorum
           AIU301]
          Length = 176

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 124/176 (70%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++ VYS  EKK    I    ++ GL   + ++ +P+E VV +R+ +KVN+ER+F
Sbjct: 1   MAKRWYVLHVYSGFEKKIATQIMETAAQKGLADQIEQVMVPAEEVVEIRRAQKVNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MTD  +H ++D PKV GFLGT   P+P++++E + ++ QV+   +    +
Sbjct: 61  FPGYVLVKMEMTDDAWHLVRDIPKVTGFLGTKLKPTPISEAEAQRMLQQVQEGTEHRRPA 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE+V V+DGPF SFNG+++++DE+K RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 VVFEIGEQVRVADGPFTSFNGVIEDIDEDKGRVKVSVSIFGRSTPVELEYGQVEKL 176


>gi|197104678|ref|YP_002130055.1| transcription antitermination protein NusG [Phenylobacterium
           zucineum HLK1]
 gi|196478098|gb|ACG77626.1| transcription antitermination protein NusG [Phenylobacterium
           zucineum HLK1]
          Length = 189

 Score =  181 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 102/174 (58%), Positives = 130/174 (74%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  ESI  +    GL+   +EI +P+E VV +R+GRKVNSER+FFP
Sbjct: 15  HKWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKFFP 74

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  MTD+ YH IK+TPKV GFLG+G  P PV++ E+E I+  +E  V+RP  ++ 
Sbjct: 75  GYVLVKMEMTDEAYHLIKNTPKVTGFLGSGSKPIPVSEKEVERIVGAIEEGVERPKPTIT 134

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FE+GE+V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y QVEKI
Sbjct: 135 FEIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEKI 188


>gi|28867842|ref|NP_790461.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|66047787|ref|YP_237628.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. syringae B728a]
 gi|213969202|ref|ZP_03397340.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato T1]
 gi|289675473|ref|ZP_06496363.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. syringae FF5]
 gi|301381709|ref|ZP_07230127.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato Max13]
 gi|302130768|ref|ZP_07256758.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28851078|gb|AAO54156.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|63258494|gb|AAY39590.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. syringae B728a]
 gi|213925880|gb|EEB59437.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato T1]
 gi|330879467|gb|EGH13616.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330899748|gb|EGH31167.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330940869|gb|EGH43828.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330966923|gb|EGH67183.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|330969834|gb|EGH69900.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. aceris str. M302273PT]
 gi|331018148|gb|EGH98204.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 177

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176


>gi|308272991|emb|CBX29595.1| Transcription antitermination protein nusG [uncultured
           Desulfobacterium sp.]
          Length = 176

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 115/176 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WYI+ VYS  E K   ++  +++          + +P+E+VV + KG++  S R+F
Sbjct: 1   MSLKWYILHVYSGFENKVKTALEEKIAAYNRPDKFGNVLVPTEQVVELVKGKRKTSTRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYVL++  + D+V+H + DT KV GFLG  E P+P++D E E I+N++EA   +P   
Sbjct: 61  YPGYVLVQMDLDDEVWHIVNDTAKVSGFLGGREKPTPISDDEAEQILNRMEAGKLKPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +FE G+ + V DGPF +FNG+V+ V+ EK ++ V V IFGR TPVEL + QV KI
Sbjct: 121 YYFETGDEIRVVDGPFTNFNGVVEEVNPEKGKIKVLVSIFGRSTPVELEFVQVTKI 176


>gi|330991780|ref|ZP_08315730.1| Transcription antitermination protein nusG [Gluconacetobacter sp.
           SXCC-1]
 gi|329761248|gb|EGG77742.1| Transcription antitermination protein nusG [Gluconacetobacter sp.
           SXCC-1]
          Length = 176

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/176 (52%), Positives = 123/176 (69%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++ VYS  EKK  + I  + ++ GL     EI +PSE V  +R+G+KVNSER+F
Sbjct: 1   MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEMRRGQKVNSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+   +TD+ +H +KDTPKV GFLG+   PSP+   E E IM Q +  V+R   S
Sbjct: 61  FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPIPKVEAERIMKQAQEGVERVRPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE++ V+DGPF SFNG ++ VDEE+ R+ V V IFGR TPV+L YNQVEK+
Sbjct: 121 VTFEIGEQIRVADGPFTSFNGTIEEVDEERGRLKVSVSIFGRSTPVDLEYNQVEKV 176


>gi|149376698|ref|ZP_01894457.1| transcription antitermination protein NusG [Marinobacter algicola
           DG893]
 gi|149359071|gb|EDM47536.1| transcription antitermination protein NusG [Marinobacter algicola
           DG893]
          Length = 177

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + ++  R++ +GL+    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKHVMRTLRERVALNGLEEKFGEILVPTEEVVEMRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K+TP+V+GF+G   + P+P+T+ E E I+ +VE+   +P  
Sbjct: 61  YPGYVLVQMEMDDGTWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V++GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEIVRVTEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176


>gi|118591199|ref|ZP_01548598.1| transcription antitermination protein NusG [Stappia aggregata IAM
           12614]
 gi|118436275|gb|EAV42917.1| transcription antitermination protein NusG [Stappia aggregata IAM
           12614]
          Length = 176

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 129/176 (73%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL  L  EI +P E+VV VR+GRKV++ER+F
Sbjct: 1   MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+K  MT++ +H IKDTPKV GFLG  + P P+ + E   I+NQV+  V RP  S
Sbjct: 61  FPGYVLVKMEMTNEAFHLIKDTPKVTGFLGADQKPMPIPEKEAMRIINQVQEGVDRPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+
Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176


>gi|15599471|ref|NP_252965.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           PAO1]
 gi|116052310|ref|YP_788844.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987944|ref|YP_001346211.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           PA7]
 gi|218889397|ref|YP_002438261.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           LESB58]
 gi|254237135|ref|ZP_04930458.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           C3719]
 gi|254242920|ref|ZP_04936242.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           2192]
 gi|296387168|ref|ZP_06876667.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           PAb1]
 gi|14423808|sp|Q9HWC4|NUSG_PSEAE RecName: Full=Transcription antitermination protein nusG
 gi|9950494|gb|AAG07663.1|AE004843_5 transcription antitermination protein NusG [Pseudomonas aeruginosa
           PAO1]
 gi|115587531|gb|ABJ13546.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169066|gb|EAZ54577.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           C3719]
 gi|126196298|gb|EAZ60361.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           2192]
 gi|150963102|gb|ABR85127.1| transcription termination/antitermination factor NusG [Pseudomonas
           aeruginosa PA7]
 gi|218769620|emb|CAW25380.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           LESB58]
          Length = 177

 Score =  180 bits (456), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E + I+ +V  +  +P  
Sbjct: 61  FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177


>gi|237749504|ref|ZP_04579984.1| transcription antiterminator [Oxalobacter formigenes OXCC13]
 gi|229380866|gb|EEO30957.1| transcription antiterminator [Oxalobacter formigenes OXCC13]
          Length = 195

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY+V VYS  EK    ++  R+ R G+     EI +P+E VV V+ G+K  +ERRFF
Sbjct: 20  TMRWYVVHVYSGMEKSVRRALMERIERMGMTDQFGEILVPTEEVVEVKGGQKSVTERRFF 79

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGY+L++  MTD+ +H ++DT KV GF+G     P+P+   E+E ++ Q++  V +P   
Sbjct: 80  PGYILVEMEMTDETWHLVRDTGKVTGFVGGKSNKPTPIPHREMEKLLQQMQDGVAKPRPK 139

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 ISYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195


>gi|167648397|ref|YP_001686060.1| transcription antitermination protein NusG [Caulobacter sp. K31]
 gi|167350827|gb|ABZ73562.1| NusG antitermination factor [Caulobacter sp. K31]
          Length = 185

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 98/174 (56%), Positives = 129/174 (74%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  ESI  +    GL+   +EI +P+E VV +R+GRKVN+ER+FFP
Sbjct: 11  HKWYIVHAYSNFEKKVAESIREQAKSHGLEDSFSEILVPTEDVVEIRRGRKVNAERKFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  ++D+ YH IK+TPKV GFLG+   P PV++ E++ I+  +E  V+RP + V 
Sbjct: 71  GYVLVKMHLSDEAYHLIKNTPKVTGFLGSASKPQPVSEKEVQRIVGAIEEGVERPKTVVL 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FE+GE V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y+QVEKI
Sbjct: 131 FEIGENVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYSQVEKI 184


>gi|152977734|ref|YP_001343363.1| transcription antitermination protein NusG [Actinobacillus
           succinogenes 130Z]
 gi|150839457|gb|ABR73428.1| NusG antitermination factor [Actinobacillus succinogenes 130Z]
          Length = 185

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +  + ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 9   KRWYVLQAFSGFEGRVAATLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +  ++  P+V+GF+G   + P P++  E + I+N+VE    +P    
Sbjct: 69  GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPLPISQREADAILNRVEQNADKPRPKN 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 129 VFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 182


>gi|83591289|ref|YP_431298.1| transcription antitermination protein nusG [Moorella thermoacetica
           ATCC 39073]
 gi|83574203|gb|ABC20755.1| transcription antitermination protein nusG [Moorella thermoacetica
           ATCC 39073]
          Length = 175

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 106/176 (60%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  R+    +   +  + +P E  V ++ G++   +R+ 
Sbjct: 1   MEKAWYVIHTYSGYENKVKANLEKRVESMNMGDKIFRVVVPMEDEVQIKDGKRKIVKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV+++ V+TD  ++ +++TP V GF+GTG  P P+ + E++ I+ Q+   V+ P   
Sbjct: 61  YPGYVMVEMVLTDASWYVVRNTPGVTGFVGTGNKPIPLREEEVDQILQQMG--VEEPRPR 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   VGE V V+ GPF +F G ++ +  +K ++ V V +FGR TP+EL +NQ+EKI
Sbjct: 119 IDVTVGENVRVTSGPFENFIGSIEEIMPDKGKLRVLVSMFGRETPIELDFNQIEKI 174


>gi|328953170|ref|YP_004370504.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328453494|gb|AEB09323.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 176

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  EKK  +++  R    G+  L+T++ +P+E+V  + KG++  S R+F
Sbjct: 1   MAQKWYVVHTYSGFEKKVKDALEERARSRGMQDLITQVLVPTEQVEEMIKGQRRISHRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYVL++  + D  +H ++DTPKV GF+G    P+ + D+E E ++NQ++    +P   
Sbjct: 61  YPGYVLVRMELNDDTWHLVQDTPKVTGFIGGRMEPAVIPDAEAEKVINQIKEGALKPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+G++V V DGPF +FNG+V  V  EK RV V + +FGR TPVEL ++QVEK
Sbjct: 121 IKFELGDKVRVIDGPFTNFNGVVDEVKGEKGRVRVMISVFGRPTPVELEFSQVEK 175


>gi|163796064|ref|ZP_02190026.1| Transcription antiterminator [alpha proteobacterium BAL199]
 gi|159178523|gb|EDP63063.1| Transcription antiterminator [alpha proteobacterium BAL199]
          Length = 176

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 86/176 (48%), Positives = 125/176 (71%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V VYS  EKK   ++  + +  G++ L+ E+ +P+E ++ VR+G KV++ER+F
Sbjct: 1   MAIRWYVVHVYSGFEKKVATAVREQAAAQGMEDLIEEVLVPTEEIIEVRRGAKVSAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+K  +TD+ +H +   PKV GFLG    P+P+T+ E   I+ QV   V RP  S
Sbjct: 61  FPGYILVKMQLTDETWHLVTSQPKVTGFLGGKGKPTPITEGEATRIIKQVSEGVDRPKPS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+GE+V V+DGPFA+FNG V++VDEEK+R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 ITFEIGEQVRVADGPFATFNGYVEDVDEEKARLKVAVSIFGRSTPVDLEFTQVEKV 176


>gi|330953210|gb|EGH53470.1| transcription antitermination protein NusG [Pseudomonas syringae
           Cit 7]
          Length = 177

 Score =  180 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDT +V+GF+G   + P+P+TD E E I  +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTSRVMGFIGGTADKPAPITDKEAEAIRRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176


>gi|304310004|ref|YP_003809602.1| Transcription antitermination protein [gamma proteobacterium HdN1]
 gi|301795737|emb|CBL43936.1| Transcription antitermination protein [gamma proteobacterium HdN1]
          Length = 177

 Score =  180 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK+   S+  R+ R GL+    E+ +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKQVKRSLEERVKRFGLEDKFGEVLVPTEEVVEIRGGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M ++ ++ +K+ PKV+GF+G   + P+P++D E   I+ +VE  V++P  
Sbjct: 61  FPGYVLVQMEMDEESWYLVKECPKVMGFIGGTLDKPAPISDVEANAILRRVEDGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176


>gi|329897158|ref|ZP_08271899.1| Transcription antitermination protein NusG [gamma proteobacterium
           IMCC3088]
 gi|328921375|gb|EGG28768.1| Transcription antitermination protein NusG [gamma proteobacterium
           IMCC3088]
          Length = 177

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EKK   ++  R+    +     ++ +P+E VV ++ G+K  SER+F
Sbjct: 1   MSMRWYVVHAYSGYEKKVATALKERIDLHAMGDRFGDVLVPTEEVVEMKNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+TD+E + I+ +VE   ++P  
Sbjct: 61  FPGYVLVQMELDDDTWHLVKETPRVMGFIGGKADAPAPITDAEAQAILRRVEDGTEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  F G+V+ V+ EKSR++V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEMVRVVDGPFNDFYGVVEEVNYEKSRLNVAVLIFGRSTPVELEFSQVEK 176


>gi|323703915|ref|ZP_08115547.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574]
 gi|323531131|gb|EGB21038.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574]
          Length = 175

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 112/176 (63%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+V  YS  E K   ++  R+    ++  +  I +P E  V ++ G+K  S+++ 
Sbjct: 1   MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ +MTD  ++ +++TP V GF+G+G  P P+ + E + I+ Q+   ++ P + 
Sbjct: 61  FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGTKPIPLNEDEAKAIIKQMG--MEEPRTR 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V + +GE V V+DGPF +F G+++ +  +K +V V V +FGR TP+EL + Q+EK+
Sbjct: 119 VDYSLGENVRVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKM 174


>gi|330891943|gb|EGH24604.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 177

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V  +DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEVVRATDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176


>gi|258591304|emb|CBE67603.1| component in transcription antitermination [NC10 bacterium 'Dutch
           sediment']
          Length = 176

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 118/176 (67%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++  YS  E K  ESI  R +  GL   ++++ IP+E VV ++KG++  S R+F
Sbjct: 1   MSQSWYVIHTYSGFENKVKESIEQRAAALGLSDKISKVMIPTEDVVELKKGKRTVSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVLIKA M++++++ +K+TPKV GF+G    P+PV + +++ I+ QVE   +RP   
Sbjct: 61  FPGYVLIKAEMSEQLWYLVKNTPKVTGFVGPATQPTPVPEEQVQTILQQVEEGAERPKHR 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V F  GE V V DGPFA+F G+V  V  EK R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 VMFLRGESVRVIDGPFANFTGLVDEVKPEKGRLKVMVSIFGRPTPVDLEFLQVEKV 176


>gi|225175687|ref|ZP_03729681.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1]
 gi|225169016|gb|EEG77816.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1]
          Length = 174

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+V  Y+  E K   ++  R+    +   +  + +P E+ + ++ G+K  + ++ 
Sbjct: 1   MSKNWYVVHTYAGYENKVKTNLEKRVESMEMQDKIFRVLVPMEKELEIKNGKKKETLKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ ++TD  ++ +++TP V GF+G G  P P++D+EI  I+ Q+     +P   
Sbjct: 61  FPGYVLVEMIVTDDSWYVVRNTPGVTGFVGPGSKPIPLSDAEISQILKQMGMGDSKP--K 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F VGE V V+DGPFA+F G V+ V E++ ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 IDFSVGENVRVTDGPFANFVGSVEEVLEDRRKIKVLVSMFGRETPVELEFYQVEKL 174


>gi|329890177|ref|ZP_08268520.1| transcription termination/antitermination factor NusG
           [Brevundimonas diminuta ATCC 11568]
 gi|328845478|gb|EGF95042.1| transcription termination/antitermination factor NusG
           [Brevundimonas diminuta ATCC 11568]
          Length = 191

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 130/176 (73%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  E +  +  + GL+   +EI +P+E V+ +R+G+KVN+ER+FFP
Sbjct: 14  HKWYIVHAYSNFEKKVAEQLRDQAKQQGLEDAFSEILVPTEDVIEIRRGKKVNAERKFFP 73

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           GYVL+K  MTD+ YH +K+TPKV GFLG   G  P PV++ E+++I+ QVE  V+RP  +
Sbjct: 74  GYVLVKMEMTDEAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPT 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F++GE V V DGPFASF+G V++VDEE +R+ V V IFGR TPVEL YNQVEK+
Sbjct: 134 IRFDIGENVKVIDGPFASFDGQVESVDEENARLRVAVSIFGRPTPVELEYNQVEKV 189


>gi|26987183|ref|NP_742608.1| transcription antitermination protein NusG [Pseudomonas putida
           KT2440]
 gi|148545727|ref|YP_001265829.1| transcription antitermination protein NusG [Pseudomonas putida F1]
 gi|167031488|ref|YP_001666719.1| transcription antitermination protein NusG [Pseudomonas putida
           GB-1]
 gi|325271153|ref|ZP_08137709.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51]
 gi|24981819|gb|AAN66072.1|AE016236_6 transcription antitermination protein NusG [Pseudomonas putida
           KT2440]
 gi|148509785|gb|ABQ76645.1| transcription antitermination protein nusG [Pseudomonas putida F1]
 gi|166857976|gb|ABY96383.1| NusG antitermination factor [Pseudomonas putida GB-1]
 gi|324103705|gb|EGC00996.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51]
          Length = 177

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177


>gi|104779743|ref|YP_606241.1| transcription antitermination protein NusG [Pseudomonas entomophila
           L48]
 gi|95108730|emb|CAK13424.1| transcription antitermination protein NusG [Pseudomonas entomophila
           L48]
          Length = 177

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177


>gi|83312245|ref|YP_422509.1| transcription antitermination protein NusG [Magnetospirillum
           magneticum AMB-1]
 gi|82947086|dbj|BAE51950.1| Transcription antiterminator [Magnetospirillum magneticum AMB-1]
          Length = 177

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/175 (56%), Positives = 127/175 (72%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY++ VYS  EKK  +SI  +  + G+     +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3   TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGAKVNAERKFF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K  +TD  +H +K+TPKV GFLG    P P+T+ E E I+ QV+  V+RP  S+
Sbjct: 63  PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V VSDGPF SFNG+V+ VDEEK+R+ V V IFGR TPVEL Y+QVEKI
Sbjct: 123 IFEVGEQVRVSDGPFTSFNGLVEEVDEEKARLKVAVSIFGRSTPVELEYSQVEKI 177


>gi|294085946|ref|YP_003552706.1| transcription antiterminator [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665521|gb|ADE40622.1| Transcription antiterminator [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 176

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 124/176 (70%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V V+S  EKK  ++I  +    GL+  + E+ +P+E VV +R+G +V SER+F
Sbjct: 1   MAKRWYVVHVFSGSEKKVAQAITEQAVTHGLEDQIDEVMVPTEEVVEMRRGVRVQSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+K  ++D+ +  +   P+V GFLG    P P+T+SE E ++ Q+   V+RP S+
Sbjct: 61  FPGYILVKLELSDEAWQLVTSQPRVTGFLGGKGKPIPITNSEAERLIKQMSEGVERPRST 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F++GE+V VSDGPFASFNG V+  D++K+R+ V V IFGR TPVEL Y+QVEK+
Sbjct: 121 ITFDIGEQVRVSDGPFASFNGYVEEADDDKARLKVTVSIFGRSTPVELEYSQVEKV 176


>gi|90417775|ref|ZP_01225687.1| transcription antitermination protein NusG [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337447|gb|EAS51098.1| transcription antitermination protein NusG [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 176

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/175 (57%), Positives = 133/175 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  ESI  +  + GL     +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KA +TD+V+  IK+TPKV GFLG    P+P+T+ E E I+ QV+  V+RP  +
Sbjct: 61  FPGYVLVKAELTDQVFSMIKNTPKVTGFLGAENRPTPITEKEAEQILAQVQDGVERPKPT 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V F++GE+V VSDGPFASFNGIV+ VD+E++R+ VEV IFGR TPV+L + QVEK
Sbjct: 121 VSFDIGEQVRVSDGPFASFNGIVQEVDQERARLKVEVSIFGRATPVDLEFGQVEK 175


>gi|88812769|ref|ZP_01128015.1| transcription antitermination protein NusG [Nitrococcus mobilis
           Nb-231]
 gi|88790007|gb|EAR21128.1| transcription antitermination protein NusG [Nitrococcus mobilis
           Nb-231]
          Length = 177

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E +   S+  R+ R G++    EI +P+E VV +R+G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFENQVKRSLEERIKREGVESKFGEILVPTEEVVEMREGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MT++ +H ++D P+V+ F+G   + P+P++D+E E I+N+V    +RP  
Sbjct: 61  FPGYVLVQMEMTEETWHLVRDVPRVMAFIGGTSDRPAPISDAEAEQILNRVREGAERPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V  GPF  FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEVVRVVSGPFTDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 176


>gi|326793546|ref|YP_004311366.1| NusG antitermination factor [Marinomonas mediterranea MMB-1]
 gi|326544310|gb|ADZ89530.1| NusG antitermination factor [Marinomonas mediterranea MMB-1]
          Length = 177

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ YS  EK  + ++  R+    +  L  EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVQAYSGYEKHVMRALTERVQLMSMQDLFGEILVPTEEVVEIRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K T +V+GF+G   + PSP+T  E + I+ +V   V +P  
Sbjct: 61  YPGYVLVQMDMNDDSWHLVKGTSRVLGFIGGTADKPSPITQREADAILQRVNEGVDKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEAGEVVRVNDGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176


>gi|302344368|ref|YP_003808897.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075]
 gi|301640981|gb|ADK86303.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075]
          Length = 177

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYIV  YS  E K  ES+  R+   GLD    +I +P E+VV + KG++  S R+F
Sbjct: 1   MAKKWYIVHTYSGFENKVRESLTERVRSHGLDDYFGQILVPMEKVVEMVKGQRRESSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGY++++  M D+ +H +KDT KV GF+G  E  P+P++D E + I++Q++   + P  
Sbjct: 61  YPGYIVVEMEMNDETWHLVKDTAKVTGFVGGSETDPTPISDEEAQRILSQMQEGTKAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE G+ V V DGPF +FNG V+ V+ EK ++ V + IFGR TPVEL + QV K+
Sbjct: 121 KFNFEEGDEVRVIDGPFNNFNGSVEEVNPEKGKLRVLISIFGRATPVELEFVQVTKV 177


>gi|170723918|ref|YP_001751606.1| transcription antitermination protein NusG [Pseudomonas putida
           W619]
 gi|169761921|gb|ACA75237.1| NusG antitermination factor [Pseudomonas putida W619]
          Length = 177

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGNVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177


>gi|120553640|ref|YP_957991.1| transcription antitermination protein NusG [Marinobacter aquaeolei
           VT8]
 gi|120323489|gb|ABM17804.1| transcription antitermination protein nusG [Marinobacter aquaeolei
           VT8]
          Length = 177

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + ++  R++  G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKHVMRTLKERVALEGMEDKFGEILVPTEEVVEMRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K+TP+V+GF+G   + P+P+T+ E E I+ +VE+   +P  
Sbjct: 61  YPGYVLVQMEMDDASWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V +GPFA FNG+V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEIVRVVEGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVELEFGQVEK 176


>gi|183597452|ref|ZP_02958945.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827]
 gi|188023201|gb|EDU61241.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827]
          Length = 181

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +   G++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLHGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181


>gi|149925890|ref|ZP_01914153.1| transcription antitermination protein NusG [Limnobacter sp. MED105]
 gi|149825178|gb|EDM84389.1| transcription antitermination protein NusG [Limnobacter sp. MED105]
          Length = 177

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK    ++  R+ RS    L  +I +PSE VV ++ G+K  SERRF
Sbjct: 1   MSKRWYVVHAYSGLEKSVQRALQERIDRSEFSDLFGQILVPSEEVVEIKGGQKSISERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MTD  +H +K+TPKV GF+G  G  P+P++  E++ IM Q++   ++P  
Sbjct: 61  FPGYVLVEMEMTDDSWHLVKNTPKVTGFVGGTGNRPTPISQKEVDKIMQQMQEGAEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V +EVGE V V +GPFA FNG V+ ++ EKS++ V V IFGR TPVEL ++QVEK+
Sbjct: 121 KVLYEVGEMVRVKEGPFADFNGNVEEINYEKSKLRVSVTIFGRATPVELDFHQVEKV 177


>gi|332091145|gb|EGI96235.1| transcription termination/antitermination factor NusG [Shigella
           dysenteriae 155-74]
          Length = 181

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|15804572|ref|NP_290613.1| transcription antitermination protein NusG [Escherichia coli
           O157:H7 EDL933]
 gi|15834159|ref|NP_312932.1| transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131812|ref|NP_418409.1| transcription termination factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|24115267|ref|NP_709777.1| transcription antitermination protein NusG [Shigella flexneri 2a
           str. 301]
 gi|30064735|ref|NP_838906.1| transcription antitermination protein NusG [Shigella flexneri 2a
           str. 2457T]
 gi|74314476|ref|YP_312895.1| transcription antitermination protein NusG [Shigella sonnei Ss046]
 gi|82546324|ref|YP_410271.1| transcription antitermination protein NusG [Shigella boydii Sb227]
 gi|82778843|ref|YP_405192.1| transcription antitermination protein NusG [Shigella dysenteriae
           Sd197]
 gi|89110057|ref|AP_003837.1| transcription termination factor [Escherichia coli str. K-12
           substr. W3110]
 gi|110807832|ref|YP_691352.1| transcription antitermination protein NusG [Shigella flexneri 5
           str. 8401]
 gi|157154871|ref|YP_001465473.1| transcription antitermination protein NusG [Escherichia coli
           E24377A]
 gi|157163450|ref|YP_001460768.1| transcription antitermination protein NusG [Escherichia coli HS]
 gi|168759202|ref|ZP_02784209.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4401]
 gi|168771452|ref|ZP_02796459.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4486]
 gi|168780365|ref|ZP_02805372.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4076]
 gi|168790340|ref|ZP_02815347.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC869]
 gi|170022015|ref|YP_001726969.1| transcription antitermination protein NusG [Escherichia coli ATCC
           8739]
 gi|170083442|ref|YP_001732762.1| transcription termination factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682823|ref|YP_001746366.1| transcription antitermination protein NusG [Escherichia coli
           SMS-3-5]
 gi|187730221|ref|YP_001882667.1| transcription antitermination protein NusG [Shigella boydii CDC
           3083-94]
 gi|188492529|ref|ZP_02999799.1| transcription termination/antitermination factor NusG [Escherichia
           coli 53638]
 gi|195939607|ref|ZP_03084989.1| transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. EC4024]
 gi|208812131|ref|ZP_03253460.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819832|ref|ZP_03260152.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4042]
 gi|209399471|ref|YP_002273498.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4115]
 gi|209921460|ref|YP_002295544.1| transcription antitermination protein NusG [Escherichia coli SE11]
 gi|217325434|ref|ZP_03441518.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. TW14588]
 gi|218551034|ref|YP_002384825.1| transcription antitermination protein NusG [Escherichia fergusonii
           ATCC 35469]
 gi|218556536|ref|YP_002389450.1| transcription antitermination protein NusG [Escherichia coli IAI1]
 gi|218697689|ref|YP_002405356.1| transcription antitermination protein NusG [Escherichia coli 55989]
 gi|218702612|ref|YP_002410241.1| transcription antitermination protein NusG [Escherichia coli IAI39]
 gi|218707600|ref|YP_002415119.1| transcription antitermination protein NusG [Escherichia coli
           UMN026]
 gi|238903038|ref|YP_002928834.1| transcription termination factor [Escherichia coli BW2952]
 gi|253775389|ref|YP_003038220.1| transcription antitermination protein NusG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039237|ref|ZP_04873286.1| transcription termination/antitermination factor NusG [Escherichia
           sp. 1_1_43]
 gi|254163923|ref|YP_003047031.1| transcription antitermination protein NusG [Escherichia coli B str.
           REL606]
 gi|254795980|ref|YP_003080817.1| transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021698|ref|ZP_05435563.1| transcription antitermination protein NusG [Shigella sp. D9]
 gi|256026297|ref|ZP_05440162.1| transcription antitermination protein NusG [Escherichia sp.
           4_1_40B]
 gi|260846782|ref|YP_003224560.1| transcription termination factor NusG [Escherichia coli O103:H2
           str. 12009]
 gi|260858091|ref|YP_003231982.1| transcription termination factor NusG [Escherichia coli O26:H11
           str. 11368]
 gi|260870693|ref|YP_003237095.1| transcription termination factor NusG [Escherichia coli O111:H-
           str. 11128]
 gi|261227307|ref|ZP_05941588.1| transcription termination factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257054|ref|ZP_05949587.1| transcription termination factor NusG [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285396|ref|YP_003502214.1| Transcription antitermination protein nusG [Escherichia coli O55:H7
           str. CB9615]
 gi|293407598|ref|ZP_06651516.1| nusG [Escherichia coli FVEC1412]
 gi|293413417|ref|ZP_06656077.1| transcription termination/antitermination factor NusG [Escherichia
           coli B354]
 gi|293417485|ref|ZP_06660108.1| transcription termination/antitermination factor NusG [Escherichia
           coli B185]
 gi|293474289|ref|ZP_06664698.1| transcription termination/antitermination factor NusG [Escherichia
           coli B088]
 gi|298383346|ref|ZP_06992938.1| transcription antitermination protein nusG [Escherichia coli
           FVEC1302]
 gi|300819792|ref|ZP_07099979.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 107-1]
 gi|300824639|ref|ZP_07104747.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 119-7]
 gi|300897605|ref|ZP_07116013.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 198-1]
 gi|300907533|ref|ZP_07125173.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 84-1]
 gi|300919397|ref|ZP_07135903.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 115-1]
 gi|300925847|ref|ZP_07141692.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 182-1]
 gi|300928799|ref|ZP_07144308.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 187-1]
 gi|300938794|ref|ZP_07153506.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 21-1]
 gi|300947415|ref|ZP_07161606.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 116-1]
 gi|300954789|ref|ZP_07167218.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 175-1]
 gi|301019394|ref|ZP_07183571.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 69-1]
 gi|301023348|ref|ZP_07187140.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 196-1]
 gi|301302207|ref|ZP_07208339.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 124-1]
 gi|301326087|ref|ZP_07219485.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 78-1]
 gi|301645764|ref|ZP_07245684.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 146-1]
 gi|307140673|ref|ZP_07500029.1| transcription antitermination protein NusG [Escherichia coli H736]
 gi|307315045|ref|ZP_07594631.1| NusG antitermination factor [Escherichia coli W]
 gi|309783933|ref|ZP_07678578.1| transcription termination/antitermination factor NusG [Shigella
           dysenteriae 1617]
 gi|309797685|ref|ZP_07692071.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 145-7]
 gi|312974232|ref|ZP_07788402.1| transcription termination/antitermination factor NusG [Escherichia
           coli 1827-70]
 gi|331644716|ref|ZP_08345834.1| transcription termination/antitermination factor NusG [Escherichia
           coli H736]
 gi|331655679|ref|ZP_08356669.1| transcription termination/antitermination factor NusG [Escherichia
           coli M718]
 gi|331665636|ref|ZP_08366532.1| transcription termination/antitermination factor NusG [Escherichia
           coli TA143]
 gi|331670834|ref|ZP_08371669.1| transcription termination/antitermination factor NusG [Escherichia
           coli TA271]
 gi|331680102|ref|ZP_08380763.1| transcription termination/antitermination factor NusG [Escherichia
           coli H591]
 gi|331685723|ref|ZP_08386305.1| transcription termination/antitermination factor NusG [Escherichia
           coli H299]
 gi|84028777|sp|P0AFG1|NUSG_ECO57 RecName: Full=Transcription antitermination protein nusG
 gi|84028778|sp|P0AFG0|NUSG_ECOLI RecName: Full=Transcription antitermination protein nusG
 gi|84028779|sp|P0AFG2|NUSG_SHIFL RecName: Full=Transcription antitermination protein nusG
 gi|209447284|pdb|2JVV|A Chain A, Solution Structure Of E. Coli Nusg Carboxyterminal Domain
 gi|12518904|gb|AAG59178.1|AE005629_7 component in transcription antitermination [Escherichia coli
           O157:H7 str. EDL933]
 gi|147801|gb|AAA24622.1| NusG protein [Escherichia coli]
 gi|396321|gb|AAC43080.1| ORF_o181 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790414|gb|AAC76956.1| transcription termination factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364381|dbj|BAB38328.1| component in transcription antitermination [Escherichia coli
           O157:H7 str. Sakai]
 gi|24054560|gb|AAN45484.1| component in transcription antitermination [Shigella flexneri 2a
           str. 301]
 gi|30042995|gb|AAP18717.1| component in transcription antitermination [Shigella flexneri 2a
           str. 2457T]
 gi|73857953|gb|AAZ90660.1| component in transcription antitermination [Shigella sonnei Ss046]
 gi|81242991|gb|ABB63701.1| component in transcription antitermination [Shigella dysenteriae
           Sd197]
 gi|81247735|gb|ABB68443.1| NusG [Shigella boydii Sb227]
 gi|85676088|dbj|BAE77338.1| transcription termination factor [Escherichia coli str. K12 substr.
           W3110]
 gi|110617380|gb|ABF06047.1| component in transcription antitermination [Shigella flexneri 5
           str. 8401]
 gi|157069130|gb|ABV08385.1| transcription termination/antitermination factor NusG [Escherichia
           coli HS]
 gi|157076901|gb|ABV16609.1| transcription termination/antitermination factor NusG [Escherichia
           coli E24377A]
 gi|169756943|gb|ACA79642.1| NusG antitermination factor [Escherichia coli ATCC 8739]
 gi|169891277|gb|ACB04984.1| transcription termination factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|170520541|gb|ACB18719.1| transcription termination/antitermination factor NusG [Escherichia
           coli SMS-3-5]
 gi|187427213|gb|ACD06487.1| transcription termination/antitermination factor NusG [Shigella
           boydii CDC 3083-94]
 gi|188487728|gb|EDU62831.1| transcription termination/antitermination factor NusG [Escherichia
           coli 53638]
 gi|189001643|gb|EDU70629.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4076]
 gi|189354220|gb|EDU72639.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4401]
 gi|189359775|gb|EDU78194.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4486]
 gi|189370168|gb|EDU88584.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC869]
 gi|208733408|gb|EDZ82095.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739955|gb|EDZ87637.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4042]
 gi|209160871|gb|ACI38304.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4115]
 gi|209751858|gb|ACI74236.1| 50S ribosomal subunit protein L11 [Escherichia coli]
 gi|209751860|gb|ACI74237.1| 50S ribosomal subunit protein L11 [Escherichia coli]
 gi|209751862|gb|ACI74238.1| 50S ribosomal subunit protein L11 [Escherichia coli]
 gi|209751864|gb|ACI74239.1| 50S ribosomal subunit protein L11 [Escherichia coli]
 gi|209751866|gb|ACI74240.1| 50S ribosomal subunit protein L11 [Escherichia coli]
 gi|209914719|dbj|BAG79793.1| transcription antitermination protein [Escherichia coli SE11]
 gi|217321655|gb|EEC30079.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. TW14588]
 gi|218354421|emb|CAV01219.1| transcription termination factor [Escherichia coli 55989]
 gi|218358575|emb|CAQ91223.1| transcription termination factor [Escherichia fergusonii ATCC
           35469]
 gi|218363305|emb|CAR00955.1| transcription termination factor [Escherichia coli IAI1]
 gi|218372598|emb|CAR20473.1| transcription termination factor [Escherichia coli IAI39]
 gi|218434697|emb|CAR15629.1| transcription termination factor [Escherichia coli UMN026]
 gi|226838472|gb|EEH70502.1| transcription termination/antitermination factor NusG [Escherichia
           sp. 1_1_43]
 gi|238863680|gb|ACR65678.1| transcription termination factor [Escherichia coli BW2952]
 gi|242379512|emb|CAQ34328.1| transcription termination factor NusG [Escherichia coli BL21(DE3)]
 gi|253326433|gb|ACT31035.1| NusG antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975824|gb|ACT41495.1| transcription antitermination protein NusG [Escherichia coli B str.
           REL606]
 gi|253979980|gb|ACT45650.1| transcription antitermination protein NusG [Escherichia coli
           BL21(DE3)]
 gi|254595380|gb|ACT74741.1| transcription termination factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756740|dbj|BAI28242.1| transcription termination factor NusG [Escherichia coli O26:H11
           str. 11368]
 gi|257761929|dbj|BAI33426.1| transcription termination factor NusG [Escherichia coli O103:H2
           str. 12009]
 gi|257767049|dbj|BAI38544.1| transcription termination factor NusG [Escherichia coli O111:H-
           str. 11128]
 gi|260451191|gb|ACX41613.1| NusG antitermination factor [Escherichia coli DH1]
 gi|281603368|gb|ADA76352.1| Transcription antitermination protein nusG [Shigella flexneri
           2002017]
 gi|284924074|emb|CBG37173.1| transcription antitermination protein [Escherichia coli 042]
 gi|290765269|gb|ADD59230.1| Transcription antitermination protein nusG [Escherichia coli O55:H7
           str. CB9615]
 gi|291321319|gb|EFE60760.1| transcription termination/antitermination factor NusG [Escherichia
           coli B088]
 gi|291425366|gb|EFE98406.1| nusG [Escherichia coli FVEC1412]
 gi|291430812|gb|EFF03809.1| transcription termination/antitermination factor NusG [Escherichia
           coli B185]
 gi|291468012|gb|EFF10511.1| transcription termination/antitermination factor NusG [Escherichia
           coli B354]
 gi|298276225|gb|EFI17746.1| transcription antitermination protein nusG [Escherichia coli
           FVEC1302]
 gi|299880908|gb|EFI89119.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 196-1]
 gi|300318258|gb|EFJ68042.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 175-1]
 gi|300358652|gb|EFJ74522.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 198-1]
 gi|300399278|gb|EFJ82816.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 69-1]
 gi|300400740|gb|EFJ84278.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 84-1]
 gi|300413532|gb|EFJ96842.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 115-1]
 gi|300418072|gb|EFK01383.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 182-1]
 gi|300452984|gb|EFK16604.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 116-1]
 gi|300456278|gb|EFK19771.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 21-1]
 gi|300463210|gb|EFK26703.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 187-1]
 gi|300522888|gb|EFK43957.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 119-7]
 gi|300527613|gb|EFK48675.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 107-1]
 gi|300842370|gb|EFK70130.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 124-1]
 gi|300847180|gb|EFK74940.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 78-1]
 gi|301075975|gb|EFK90781.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 146-1]
 gi|306905550|gb|EFN36083.1| NusG antitermination factor [Escherichia coli W]
 gi|308118697|gb|EFO55959.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 145-7]
 gi|308928304|gb|EFP73766.1| transcription termination/antitermination factor NusG [Shigella
           dysenteriae 1617]
 gi|309704397|emb|CBJ03746.1| transcription antitermination protein [Escherichia coli ETEC
           H10407]
 gi|310331399|gb|EFP98664.1| transcription termination/antitermination factor NusG [Escherichia
           coli 1827-70]
 gi|313648632|gb|EFS13072.1| transcription termination/antitermination factor NusG [Shigella
           flexneri 2a str. 2457T]
 gi|315063307|gb|ADT77634.1| transcription termination factor [Escherichia coli W]
 gi|315138538|dbj|BAJ45697.1| transcription antitermination protein nusG [Escherichia coli DH1]
 gi|315253054|gb|EFU33022.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 85-1]
 gi|315617345|gb|EFU97951.1| transcription termination/antitermination factor NusG [Escherichia
           coli 3431]
 gi|320172757|gb|EFW47991.1| Transcription antitermination protein NusG [Shigella dysenteriae
           CDC 74-1112]
 gi|320179557|gb|EFW54508.1| Transcription antitermination protein NusG [Shigella boydii ATCC
           9905]
 gi|320185980|gb|EFW60728.1| Transcription antitermination protein NusG [Shigella flexneri CDC
           796-83]
 gi|320190922|gb|EFW65572.1| Transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. EC1212]
 gi|320200179|gb|EFW74768.1| Transcription antitermination protein NusG [Escherichia coli
           EC4100B]
 gi|320639072|gb|EFX08712.1| transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. G5101]
 gi|320644466|gb|EFX13529.1| transcription antitermination protein NusG [Escherichia coli
           O157:H- str. 493-89]
 gi|320649785|gb|EFX18306.1| transcription antitermination protein NusG [Escherichia coli
           O157:H- str. H 2687]
 gi|320655118|gb|EFX23074.1| transcription antitermination protein NusG [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660762|gb|EFX28216.1| transcription antitermination protein NusG [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665880|gb|EFX32911.1| transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155526|gb|EFZ41704.1| transcription termination/antitermination factor NusG [Escherichia
           coli EPECa14]
 gi|323161296|gb|EFZ47206.1| transcription termination/antitermination factor NusG [Escherichia
           coli E128010]
 gi|323167452|gb|EFZ53160.1| transcription termination/antitermination factor NusG [Shigella
           sonnei 53G]
 gi|323174509|gb|EFZ60134.1| transcription termination/antitermination factor NusG [Escherichia
           coli LT-68]
 gi|323177535|gb|EFZ63120.1| transcription termination/antitermination factor NusG [Escherichia
           coli 1180]
 gi|323182079|gb|EFZ67489.1| transcription termination/antitermination factor NusG [Escherichia
           coli 1357]
 gi|323380629|gb|ADX52897.1| NusG antitermination factor [Escherichia coli KO11]
 gi|323933976|gb|EGB30450.1| transcription termination/antitermination protein NusG [Escherichia
           coli E1520]
 gi|323938901|gb|EGB35121.1| transcription termination/antitermination protein NusG [Escherichia
           coli E482]
 gi|323943601|gb|EGB39710.1| transcription termination/antitermination protein NusG [Escherichia
           coli H120]
 gi|323958908|gb|EGB54583.1| transcription termination/antitermination protein NusG [Escherichia
           coli H489]
 gi|323963800|gb|EGB59299.1| transcription termination/antitermination protein NusG [Escherichia
           coli M863]
 gi|323969055|gb|EGB64363.1| transcription termination/antitermination protein NusG [Escherichia
           coli TA007]
 gi|323974182|gb|EGB69314.1| transcription termination/antitermination protein NusG [Escherichia
           coli TW10509]
 gi|324017335|gb|EGB86554.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 117-3]
 gi|324110894|gb|EGC04886.1| transcription termination/antitermination protein NusG [Escherichia
           fergusonii B253]
 gi|324115413|gb|EGC09358.1| transcription termination/antitermination protein NusG [Escherichia
           coli E1167]
 gi|325499286|gb|EGC97145.1| transcription antitermination protein NusG [Escherichia fergusonii
           ECD227]
 gi|326347168|gb|EGD70898.1| Transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. 1125]
 gi|326347581|gb|EGD71303.1| Transcription antitermination protein NusG [Escherichia coli
           O157:H7 str. 1044]
 gi|327250452|gb|EGE62162.1| transcription termination/antitermination factor NusG [Escherichia
           coli STEC_7v]
 gi|331036016|gb|EGI08253.1| transcription termination/antitermination factor NusG [Escherichia
           coli H736]
 gi|331046604|gb|EGI18691.1| transcription termination/antitermination factor NusG [Escherichia
           coli M718]
 gi|331057154|gb|EGI29146.1| transcription termination/antitermination factor NusG [Escherichia
           coli TA143]
 gi|331061922|gb|EGI33846.1| transcription termination/antitermination factor NusG [Escherichia
           coli TA271]
 gi|331072257|gb|EGI43591.1| transcription termination/antitermination factor NusG [Escherichia
           coli H591]
 gi|331077033|gb|EGI48249.1| transcription termination/antitermination factor NusG [Escherichia
           coli H299]
 gi|332083870|gb|EGI89083.1| transcription termination/antitermination factor NusG [Shigella
           boydii 5216-82]
 gi|332092312|gb|EGI97387.1| transcription termination/antitermination factor NusG [Shigella
           boydii 3594-74]
 gi|332105293|gb|EGJ08639.1| transcription antitermination protein nusG [Shigella sp. D9]
          Length = 181

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|77918303|ref|YP_356118.1| transcription termination/antitermination factor NusG [Pelobacter
           carbinolicus DSM 2380]
 gi|77544386|gb|ABA87948.1| transcription antitermination protein nusG [Pelobacter carbinolicus
           DSM 2380]
          Length = 177

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  YS  E K   ++  R+ + G + L  E+ IPSE VV ++ G +  S R+F
Sbjct: 1   MSKKWYGVHTYSGFENKVKMTLEERIRQLGFEELFGEVLIPSETVVEMKNGERKTSTRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L++  + ++ +H +K+TPKV GF+G G  P P++D E+  I  ++E  V+RP   
Sbjct: 61  FPGYILVQMELNNETWHVVKNTPKVTGFVGGGSAPPPISDEEVAKITARMEEDVERPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F G+V++V  +K ++ V V IFGRVTPVEL + QVEK
Sbjct: 121 VAFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLKVMVSIFGRVTPVELEFIQVEK 175


>gi|262363486|gb|ACY60207.1| transcription antitermination protein [Yersinia pestis D106004]
          Length = 181

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ YS  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAYSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|331007102|ref|ZP_08330325.1| Transcription antitermination protein NusG [gamma proteobacterium
           IMCC1989]
 gi|330419097|gb|EGG93540.1| Transcription antitermination protein NusG [gamma proteobacterium
           IMCC1989]
          Length = 177

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EKK   ++  R+  + +  L  E+ +P+E VV +R G+K  SER+F
Sbjct: 1   MSKRWYVVHAYSGYEKKVSAALKERIELNDMQELFGEVLVPTEEVVEMRAGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD  +H +K+TP+V+GF+G   + P+P+T+ E + I+ +++ +V++P  
Sbjct: 61  FPGYVLVQMELTDASWHLVKETPRVMGFIGGKADEPAPITEKEADLILQRIDDSVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKSRLQVAVLIFGRSTPVELEFGQVEK 176


>gi|284009039|emb|CBA75992.1| transcription antitermination protein [Arsenophonus nasoniae]
          Length = 181

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++    E+ +P+E V+ +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEARVAQSLREHIKLHAMEDKFGEVMVPTEEVMEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMTMDDDSWHLVRSVPRVMGFIGGTPDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181


>gi|86739281|ref|YP_479681.1| transcription antitermination protein nusG [Frankia sp. CcI3]
 gi|86566143|gb|ABD09952.1| transcription antitermination protein nusG [Frankia sp. CcI3]
          Length = 277

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+S   ++  + +I +P+E V  V+ G++   +++ +PGY
Sbjct: 104 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 163

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122
           + ++  +TD+ +  +++TP V GF+G    PSP+   E+  I+  V    ++        
Sbjct: 164 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPVVPKEKKVETVRVQE 223

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVGE V V DGPFA+    +  ++ +  R+ V V IFGR TPVEL +NQV KI
Sbjct: 224 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 277


>gi|289209341|ref|YP_003461407.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix]
 gi|288944972|gb|ADC72671.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix]
          Length = 177

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ +S  E +   S+  R+ R G+     +I +P+E VV ++ G+K  SER+F
Sbjct: 1   MALRWYVVQAFSGFEAQVKRSLEERIERFGMQDHFGQILVPTEEVVEMKDGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D+ +H +K  P+V+GF+G   + P+P++D E + I+ +++   ++P  
Sbjct: 61  FPGYVLVQMDLNDEAWHLVKAVPRVLGFIGGTADRPAPISDKEADAILQRMQEGAEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V+DGPF  FNG+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEMVRVTDGPFNDFNGVVEEVNYEKSRLLVAVQIFGRSTPVELEFHQVEK 176


>gi|168777407|ref|ZP_02802414.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4196]
 gi|187767347|gb|EDU31191.1| transcription termination/antitermination factor NusG [Escherichia
           coli O157:H7 str. EC4196]
          Length = 181

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQHVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|146308935|ref|YP_001189400.1| transcription antitermination protein NusG [Pseudomonas mendocina
           ymp]
 gi|145577136|gb|ABP86668.1| transcription antitermination protein nusG [Pseudomonas mendocina
           ymp]
          Length = 177

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H IKDTP+V+GF+G   + P+P+T+ E E I+ +V  +  +P  
Sbjct: 61  FPGYVLVQMEMNEATWHLIKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPFA F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEPGEMVRVVDGPFADFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 176


>gi|242241132|ref|YP_002989313.1| transcription antitermination protein NusG [Dickeya dadantii
           Ech703]
 gi|251791448|ref|YP_003006169.1| transcription antitermination protein NusG [Dickeya zeae Ech1591]
 gi|242133189|gb|ACS87491.1| NusG antitermination factor [Dickeya dadantii Ech703]
 gi|247540069|gb|ACT08690.1| NusG antitermination factor [Dickeya zeae Ech1591]
          Length = 181

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|254449106|ref|ZP_05062558.1| transcription termination/antitermination factor NusG [gamma
           proteobacterium HTCC5015]
 gi|198261298|gb|EDY85591.1| transcription termination/antitermination factor NusG [gamma
           proteobacterium HTCC5015]
          Length = 175

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ YS  E K    +  R+ R GL     +I +PSE VV  R G+K  SER+FFP
Sbjct: 1   MRWYVVQAYSGFEAKVKALLEERIERLGLSECFGDILVPSEEVVENRDGKKRRSERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +KDTPKV+GF+G   E P+P+++ E + I+++V+ +V +P   V
Sbjct: 61  GYVLVQMEMDDETWHLVKDTPKVLGFIGGNKERPAPISEREAQQIIDRVQESVDKPRPKV 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPF  FNG+V+ VD EKSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 LFEAGESVRVIDGPFNDFNGVVEEVDFEKSRLKVSVLIFGRSTPVDLEFSQVEK 174


>gi|126666825|ref|ZP_01737802.1| transcription antitermination protein NusG [Marinobacter sp. ELB17]
 gi|126628870|gb|EAZ99490.1| transcription antitermination protein NusG [Marinobacter sp. ELB17]
          Length = 177

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + ++  R++ +GL+    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKHVMRTLKERVALNGLEEQFGEILVPTEEVVEMRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  + D  +H +K+TP+V+GF+G   E P+P+T+ E + I+ ++E+   +P  
Sbjct: 61  YPGYVLVQMELEDATWHLVKNTPRVLGFIGGTKEKPAPITEKEADAILRRLESGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V +GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFEPGEVVRVVEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176


>gi|269926929|ref|YP_003323552.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798]
 gi|269790589|gb|ACZ42730.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798]
          Length = 201

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  E K    +  R+   G+   + +I +P+   + +R+G++   +++ FPG
Sbjct: 29  QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  M D  ++ ++ TP V GF+G+G  P+P+ + E+E I+ ++    + P   +  
Sbjct: 89  YVLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRMSE--EPPKVKMSL 146

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            +GE V + DGPF  F G V  ++EEK +V V + IFGR TPVEL + QVEKIV
Sbjct: 147 RLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEKIV 200


>gi|253987827|ref|YP_003039183.1| transcription antitermination protein NusG [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779277|emb|CAQ82438.1| transcription antitermination protein [Photorhabdus asymbiotica]
          Length = 181

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181


>gi|146281158|ref|YP_001171311.1| transcription antitermination protein NusG [Pseudomonas stutzeri
           A1501]
 gi|145569363|gb|ABP78469.1| transcription antitermination protein NusG [Pseudomonas stutzeri
           A1501]
          Length = 177

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK  + S+  R+  +G++    EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P  
Sbjct: 61  FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 KTLFEPGEVVRVADGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177


>gi|134298080|ref|YP_001111576.1| NusG antitermination factor [Desulfotomaculum reducens MI-1]
 gi|134050780|gb|ABO48751.1| transcription antitermination protein nusG [Desulfotomaculum
           reducens MI-1]
          Length = 175

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 111/176 (63%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+V  YS  E K   ++  R+    ++  +  I +P E  V ++ G+K  S+++ 
Sbjct: 1   MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ +MTD  ++ +++TP V GF+GTG  P P+ + E + I+ Q+   ++ P + 
Sbjct: 61  FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGTGSKPIPLDEEEAKTIIKQMG--IEEPKAK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   +GE V V+DGPF +F G+++ +  +K +V V V +FGR TP+EL + Q+EK+
Sbjct: 119 IDVVLGENVKVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKL 174


>gi|121997661|ref|YP_001002448.1| NusG antitermination factor [Halorhodospira halophila SL1]
 gi|121589066|gb|ABM61646.1| transcription antitermination protein nusG [Halorhodospira
           halophila SL1]
          Length = 177

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++  YS  EK+   S+  R+ R+G++    EI +P+E VV +R+G+K  SER+F
Sbjct: 1   MALRWYVIHAYSGFEKQVQRSLQERIRRAGMEDKFGEILVPTEEVVEMREGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+ P+V+GF+G   + P+P++D E E I+++V    ++P  
Sbjct: 61  FPGYVLVQMELDDDTWHLVKEVPRVMGFIGGRPDRPAPISDREAEQILSRVREGAEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V+DGPF  FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KVLFEVGEIVRVTDGPFTDFNGAVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 176


>gi|325288565|ref|YP_004264746.1| transcription antitermination protein nusG [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963966|gb|ADY54745.1| transcription antitermination protein nusG [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 175

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++  YS  E K   ++  R+    ++  +  + +P E  + V+ G+K  S+R+ 
Sbjct: 1   MSKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEVKNGKKKISKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++  MTD  ++ +++TP V GF+G+G  P P+ + E+ +I+ Q+   +++    
Sbjct: 61  FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGSGSKPLPLLEHEVANILRQMG--LEKVRHK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   VG+ V V  GPF    G+++ + EEK++V V V +FGR TPVEL + QV+K+
Sbjct: 119 IDVNVGQSVKVISGPFKDTIGVIQEILEEKAKVRVSVSMFGRETPVELEFGQVQKL 174


>gi|86158012|ref|YP_464797.1| transcription antitermination protein nusG [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774523|gb|ABC81360.1| transcription antitermination protein nusG [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 179

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 105/178 (58%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K  +S+  R+ +  L     E+ IP E V  + KG K  S+R+F
Sbjct: 1   MAKKWYVVHTYSGFENKVKKSLDERIRQHALQDSFGEVLIPMEVVQEMVKGEKKTSKRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117
           FPGY+L+   M  + +H +K TPKV GF+G  + P  V    D E++ +  Q+     +P
Sbjct: 61  FPGYILVNMEMNLQTWHLVKGTPKVTGFVGNAKTPDQVPAVSDIEVQRLTTQISEGSLKP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              V FE G+ V V+DGPF++FNG V+ V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178


>gi|260913287|ref|ZP_05919769.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632874|gb|EEX51043.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
           dagmatis ATCC 43325]
          Length = 184

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/174 (39%), Positives = 112/174 (64%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 8   KRWYVLQAFSGFEGRVATTLREYIKLHHMEEQFGEVLVPTEEVVENVAGKRRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H ++  P+V+GF+G   + P+P++  E + I+N+++ + ++P    
Sbjct: 68  GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEVRVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181


>gi|300725138|ref|YP_003714466.1| transcription antitermination protein [Xenorhabdus nematophila ATCC
           19061]
 gi|297631683|emb|CBJ92396.1| component in transcription antitermination [Xenorhabdus nematophila
           ATCC 19061]
          Length = 181

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLQDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H +++ P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|328955955|ref|YP_004373288.1| transcription antitermination protein nusG [Coriobacterium
           glomerans PW2]
 gi|328456279|gb|AEB07473.1| transcription antitermination protein nusG [Coriobacterium
           glomerans PW2]
          Length = 178

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERR 59
           M+ RWY+V  YS  E +    +  R+   G+   + +I IP E V  +++G      + +
Sbjct: 1   MSKRWYVVHTYSGYENRVKSDLERRIESMGMQDRIFDIEIPIEHVTEIKEGGHRETKDAK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  M D  +  +++TP V GFLG    P+P++  E   +M +         +
Sbjct: 61  IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGANGKPAPLSRDEFNKMMRRSSKGEAPKRT 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +V  EVG  V V+ GP A F+G V  V+ E  +V V ++IFGR TPVEL+++QV  I
Sbjct: 121 AVGLEVGTTVRVTSGPLADFDGQVAEVNAEAGKVKVILLIFGRETPVELSFDQVAAI 177


>gi|91785478|ref|YP_560684.1| transcription antitermination protein NusG [Burkholderia xenovorans
           LB400]
 gi|187925629|ref|YP_001897271.1| transcription antitermination protein NusG [Burkholderia
           phytofirmans PsJN]
 gi|296163264|ref|ZP_06846028.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
 gi|307731268|ref|YP_003908492.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
 gi|323527615|ref|YP_004229768.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
 gi|91689432|gb|ABE32632.1| transcription antitermination protein nusG [Burkholderia xenovorans
           LB400]
 gi|187716823|gb|ACD18047.1| NusG antitermination factor [Burkholderia phytofirmans PsJN]
 gi|295886500|gb|EFG66354.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
 gi|307585803|gb|ADN59201.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
 gi|323384617|gb|ADX56708.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
          Length = 185

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDQFGQILVPTEEVVEVKGGHKSVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185


>gi|158317804|ref|YP_001510312.1| NusG antitermination factor [Frankia sp. EAN1pec]
 gi|158113209|gb|ABW15406.1| NusG antitermination factor [Frankia sp. EAN1pec]
          Length = 273

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+S   ++  + +I +P+E V  V+ G++   +++ +PGY
Sbjct: 100 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--F 122
           + ++  +TD+ +  +++TP V GF+G    PSP+   E+  I+       ++  +     
Sbjct: 160 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVSILAPAAPKEKKVETVKAQE 219

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVGE V V DGPFA+    +  ++ +  R+ V V IFGR TPVEL +NQV KI
Sbjct: 220 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 273


>gi|37524443|ref|NP_927787.1| transcription antitermination protein NusG [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36783867|emb|CAE12729.1| transcription antitermination factor [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 181

 Score =  177 bits (450), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|187930386|ref|YP_001900873.1| transcription antitermination protein NusG [Ralstonia pickettii
           12J]
 gi|309782812|ref|ZP_07677532.1| transcription termination/antitermination factor NusG [Ralstonia
           sp. 5_7_47FAA]
 gi|187727276|gb|ACD28441.1| NusG antitermination factor [Ralstonia pickettii 12J]
 gi|308918236|gb|EFP63913.1| transcription termination/antitermination factor NusG [Ralstonia
           sp. 5_7_47FAA]
          Length = 194

 Score =  177 bits (450), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R GL HL  +I +PSE V+  + GRK  +ERR FP
Sbjct: 20  KRWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYV ++  MTD+ +H +K+T KV GF+G  G  PSP++ SE++ IM Q++  V++P    
Sbjct: 80  GYVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKT 139

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194


>gi|15603609|ref|NP_246683.1| transcription antitermination protein NusG [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|18202810|sp|Q9CK84|NUSG_PASMU RecName: Full=Transcription antitermination protein nusG
 gi|12722159|gb|AAK03828.1| NusG [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 183

 Score =  177 bits (450), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 112/174 (64%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 8   KRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H ++  P+V+GF+G   + P+P++  E + I+N+++ + ++P    
Sbjct: 68  GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181


>gi|296533970|ref|ZP_06896488.1| transcription termination/antitermination factor NusG [Roseomonas
           cervicalis ATCC 49957]
 gi|296265701|gb|EFH11808.1| transcription termination/antitermination factor NusG [Roseomonas
           cervicalis ATCC 49957]
          Length = 178

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 94/178 (52%), Positives = 127/178 (71%), Gaps = 2/178 (1%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M   +WY+V VYS  EKK  + +  + ++ GL   + +I +PSE V  VR+G+K+NSER+
Sbjct: 1   MADMKWYVVHVYSGFEKKIAQQLKEQAAQKGLADQIGDILVPSEEVTEVRRGQKINSERK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-V 118
           FFPGYVL+K  MTD+ +H +KDTPKV GFLG    PSP++++E + I+ QV+  V +P  
Sbjct: 61  FFPGYVLVKMAMTDEAWHLVKDTPKVTGFLGARNRPSPISEAEAQRIVRQVQEGVDKPKR 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +V FEVGE+V V+DGPF SFNG ++ VDEE+ RV V V IFGR TPVEL Y QVEK+
Sbjct: 121 PAVVFEVGEQVRVADGPFTSFNGTIEEVDEERGRVKVSVSIFGRATPVELEYAQVEKV 178


>gi|300309442|ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072227|gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae
           SmR1]
          Length = 196

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R++R+G+     +I +P+E VV ++ G K  +ERRFFP
Sbjct: 22  KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     P+P+   E++ ++ Q++  V++P   V
Sbjct: 82  GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVGE V + +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + Q+EK+
Sbjct: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196


>gi|290477021|ref|YP_003469933.1| transcription antitermination protein [Xenorhabdus bovienii
           SS-2004]
 gi|289176366|emb|CBJ83171.1| component in transcription antitermination [Xenorhabdus bovienii
           SS-2004]
          Length = 181

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +   G++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLDGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IM++++    +P    
Sbjct: 67  GYVLVQMVMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMDRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|260893763|ref|YP_003239860.1| NusG antitermination factor [Ammonifex degensii KC4]
 gi|260865904|gb|ACX53010.1| NusG antitermination factor [Ammonifex degensii KC4]
          Length = 175

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 112/175 (64%), Gaps = 2/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E K   ++  R++   ++  +  I IP E V+ ++ G+K  ++RR F
Sbjct: 3   ERRWYVIHTYSGYENKVKANLEKRIASMNMEDKIFNIVIPEEDVIEIKDGKKKATKRRIF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+L++ ++TD+ ++ +++TP V GF+G+G  P P++D E+E I+ +     + P   +
Sbjct: 63  PGYILVEMILTDESWYVVRNTPGVTGFVGSGNKPVPLSDEEVEEILKRTRG--EAPRFRI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE+V V+ GPF +F G+V+ V+ EK+++ V + +FGR TP+EL Y QVEKI
Sbjct: 121 DISPGEKVRVTSGPFQNFIGVVEEVNTEKAKLRVMISMFGRETPIELDYTQVEKI 175


>gi|311109630|ref|YP_003982483.1| transcription termination/antitermination factor NusG
           [Achromobacter xylosoxidans A8]
 gi|310764319|gb|ADP19768.1| transcription termination/antitermination factor NusG
           [Achromobacter xylosoxidans A8]
 gi|317401591|gb|EFV82218.1| transcription antitermination protein NusG [Achromobacter
           xylosoxidans C54]
          Length = 177

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+GL      I +PSE VV V+ G+K  +ERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEVKGGQKSITERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I++Q+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176


>gi|139438532|ref|ZP_01772048.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC
           25986]
 gi|133776071|gb|EBA39891.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC
           25986]
          Length = 178

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+ RWY+V  YS  E +    +  R+   G+   + +I IP ERV  +++G ++   + +
Sbjct: 1   MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIEIPMERVTEIKEGGKRETKDSK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  M D  +  +++TP V GFLG    P+P++  E   +  +         +
Sbjct: 61  IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGNGKPAPLSRDEYNKMTRRPGKGDSPKRT 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           SV  +VG  V V+DGP   F+G V  V+ E  ++ V ++IFGR TPVEL +NQV
Sbjct: 121 SVDIQVGTSVRVTDGPLTDFDGKVSEVNTEAGKLKVTLMIFGRETPVELDFNQV 174


>gi|317046439|ref|YP_004114087.1| NusG antitermination factor [Pantoea sp. At-9b]
 gi|316948056|gb|ADU67531.1| NusG antitermination factor [Pantoea sp. At-9b]
          Length = 181

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|238798658|ref|ZP_04642132.1| Transcription antitermination protein nusG [Yersinia mollaretii
           ATCC 43969]
 gi|238717476|gb|EEQ09318.1| Transcription antitermination protein nusG [Yersinia mollaretii
           ATCC 43969]
          Length = 181

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|163859291|ref|YP_001633589.1| transcription antitermination protein NusG [Bordetella petrii DSM
           12804]
 gi|163263019|emb|CAP45322.1| transcription antitermination protein NusG [Bordetella petrii]
          Length = 177

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+GL      I +PSE VV ++ G+K  SERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEMKGGQKSISERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I++Q+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176


>gi|297180665|gb|ADI16874.1| transcription antiterminator [uncultured gamma proteobacterium
           HF0010_16J05]
          Length = 177

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+V  YS  EK    ++  R+  S    L  EI +P+E VV +R G+K  SER+F
Sbjct: 1   MSKNWYVVHAYSGFEKNVARALQERVDLSEHKDLFGEILVPTEEVVEMRGGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P++  E   I+++V A  ++   
Sbjct: 61  FPGYVLVEMELNDDTWHLVKETPRVMGFIGGKADQPAPLSPREAASILDRVAAGSEKATP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPF  FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLQVAVTIFGRSTPVELDFGQVEK 176


>gi|158520714|ref|YP_001528584.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3]
 gi|158509540|gb|ABW66507.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3]
          Length = 176

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 118/176 (67%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V VYS  E K  +S+  R++ SG      E+ +P+E+VV + KG+K  S R+F
Sbjct: 1   MALKWYVVHVYSGFENKVQKSLEDRIASSGCAEKFGEVIVPTEQVVELVKGKKKESSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY+L++  + D+ +H + +T KV GFLG    P+P+TD E + I+ ++EA   +P   
Sbjct: 61  YPGYILVQMELDDETWHVVANTAKVTGFLGGKNKPAPITDQEADKILERIEAGKLKPQPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             FEVG+ V V++GPFA+F+G+V+ V++EK ++ V V IFGR TPVEL + QV K+
Sbjct: 121 YSFEVGDEVRVTEGPFATFSGLVETVNQEKGKLRVLVSIFGRSTPVELDFMQVAKL 176


>gi|33591283|ref|NP_878927.1| transcription antitermination protein NusG [Bordetella pertussis
           Tohama I]
 gi|33599002|ref|NP_886562.1| transcription antitermination protein NusG [Bordetella
           bronchiseptica RB50]
 gi|33570925|emb|CAE40389.1| transcription antitermination protein NusG [Bordetella pertussis
           Tohama I]
 gi|33575048|emb|CAE30511.1| transcription antitermination protein NusG [Bordetella
           bronchiseptica RB50]
          Length = 177

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+ L      I +PSE VV V+ G+K  +ERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I+NQ+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILNQMEEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176


>gi|16762305|ref|NP_457922.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16767402|ref|NP_463017.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|26250751|ref|NP_756791.1| transcription antitermination protein NusG [Escherichia coli
           CFT073]
 gi|29143793|ref|NP_807135.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|62182602|ref|YP_219019.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|91212813|ref|YP_542799.1| transcription antitermination protein NusG [Escherichia coli UTI89]
 gi|110644317|ref|YP_672047.1| transcription antitermination protein NusG [Escherichia coli 536]
 gi|117626246|ref|YP_859569.1| transcription antitermination protein NusG [Escherichia coli APEC
           O1]
 gi|152972839|ref|YP_001337985.1| transcription antitermination protein NusG [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156935821|ref|YP_001439737.1| transcription antitermination protein NusG [Cronobacter sakazakii
           ATCC BAA-894]
 gi|161505371|ref|YP_001572483.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161617284|ref|YP_001591249.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167554342|ref|ZP_02348083.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167995347|ref|ZP_02576437.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168239843|ref|ZP_02664901.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168245301|ref|ZP_02670233.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168264792|ref|ZP_02686765.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168467920|ref|ZP_02701757.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|170770133|ref|ZP_02904586.1| transcription termination/antitermination factor NusG [Escherichia
           albertii TW07627]
 gi|191172735|ref|ZP_03034273.1| transcription termination/antitermination factor NusG [Escherichia
           coli F11]
 gi|194442714|ref|YP_002043400.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194447628|ref|YP_002048135.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469896|ref|ZP_03075880.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735416|ref|YP_002117051.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249353|ref|YP_002149059.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|198241913|ref|YP_002218065.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388673|ref|ZP_03215285.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205354449|ref|YP_002228250.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859326|ref|YP_002245977.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213022866|ref|ZP_03337313.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213163867|ref|ZP_03349577.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213417733|ref|ZP_03350853.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213425733|ref|ZP_03358483.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213585780|ref|ZP_03367606.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213623116|ref|ZP_03375899.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650883|ref|ZP_03380936.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213852740|ref|ZP_03382272.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|215489314|ref|YP_002331745.1| transcription antitermination protein NusG [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218561048|ref|YP_002393961.1| transcription antitermination protein NusG [Escherichia coli S88]
 gi|218692263|ref|YP_002400475.1| transcription antitermination protein NusG [Escherichia coli ED1a]
 gi|224585690|ref|YP_002639489.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|227885489|ref|ZP_04003294.1| transcription antitermination protein NusG [Escherichia coli 83972]
 gi|237702749|ref|ZP_04533230.1| transcription antitermination protein nusG [Escherichia sp.
           3_2_53FAA]
 gi|238892452|ref|YP_002917186.1| transcription antitermination protein NusG [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238913727|ref|ZP_04657564.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|262043786|ref|ZP_06016888.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|289826708|ref|ZP_06545673.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|300979572|ref|ZP_07174615.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 45-1]
 gi|300985575|ref|ZP_07177491.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 200-1]
 gi|301047715|ref|ZP_07194775.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 185-1]
 gi|306811997|ref|ZP_07446205.1| transcription antitermination protein NusG [Escherichia coli NC101]
 gi|311281468|ref|YP_003943699.1| NusG antitermination factor [Enterobacter cloacae SCF1]
 gi|312965365|ref|ZP_07779598.1| transcription termination/antitermination factor NusG [Escherichia
           coli 2362-75]
 gi|330004995|ref|ZP_08305079.1| transcription termination/antitermination factor NusG [Klebsiella
           sp. MS 92-3]
 gi|331649835|ref|ZP_08350913.1| transcription termination/antitermination factor NusG [Escherichia
           coli M605]
 gi|331660541|ref|ZP_08361474.1| transcription termination/antitermination factor NusG [Escherichia
           coli TA206]
 gi|88914910|sp|P0AA03|NUSG_SALTI RecName: Full=Transcription antitermination protein nusG
 gi|90110822|sp|P0AA01|NUSG_ECOL6 RecName: Full=Transcription antitermination protein nusG
 gi|90110823|sp|P0AA02|NUSG_SALTY RecName: Full=Transcription antitermination protein nusG
 gi|25299619|pir||AB0934 transcription antitermination protein STY3737 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|26111182|gb|AAN83365.1|AE016770_165 Transcription antitermination protein nusG [Escherichia coli
           CFT073]
 gi|6960335|gb|AAF33495.1| 99% identity over 181 amino acids with E. coli transcription
           antitermination factor (NUSG) (SW:P16921) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16422705|gb|AAL22976.1| component in transcription antitermination [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504609|emb|CAD09492.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139428|gb|AAO70995.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130235|gb|AAX67938.1| component in transcription antitermination [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|91074387|gb|ABE09268.1| transcription antitermination protein [Escherichia coli UTI89]
 gi|110345909|gb|ABG72146.1| transcription antitermination protein NusG [Escherichia coli 536]
 gi|115515370|gb|ABJ03445.1| transcription antitermination protein NusG [Escherichia coli APEC
           O1]
 gi|150957688|gb|ABR79718.1| transcription antitermination protein NusG [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156534075|gb|ABU78901.1| hypothetical protein ESA_03697 [Cronobacter sakazakii ATCC BAA-894]
 gi|160866718|gb|ABX23341.1| hypothetical protein SARI_03516 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366648|gb|ABX70416.1| hypothetical protein SPAB_05135 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|170121015|gb|EDS89946.1| transcription termination/antitermination factor NusG [Escherichia
           albertii TW07627]
 gi|190907039|gb|EDV66640.1| transcription termination/antitermination factor NusG [Escherichia
           coli F11]
 gi|194401377|gb|ACF61599.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194405932|gb|ACF66151.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194456260|gb|EDX45099.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710918|gb|ACF90139.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195629016|gb|EDX48408.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197213056|gb|ACH50453.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197287542|gb|EDY26935.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197936429|gb|ACH73762.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199605771|gb|EDZ04316.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205274230|emb|CAR39249.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321448|gb|EDZ09287.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205326985|gb|EDZ13749.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205335974|gb|EDZ22738.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205346818|gb|EDZ33449.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711129|emb|CAR35503.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|215267386|emb|CAS11837.1| transcription termination factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218367817|emb|CAR05612.1| transcription termination factor [Escherichia coli S88]
 gi|218429827|emb|CAR10653.1| transcription termination factor [Escherichia coli ED1a]
 gi|222035693|emb|CAP78438.1| Transcription antitermination protein nusG [Escherichia coli LF82]
 gi|224470218|gb|ACN48048.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|226903062|gb|EEH89321.1| transcription antitermination protein nusG [Escherichia sp.
           3_2_53FAA]
 gi|227837563|gb|EEJ48029.1| transcription antitermination protein NusG [Escherichia coli 83972]
 gi|238544768|dbj|BAH61119.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259038873|gb|EEW40042.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|261249252|emb|CBG27114.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996446|gb|ACY91331.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|281181046|dbj|BAI57376.1| transcription antitermination protein [Escherichia coli SE15]
 gi|294493401|gb|ADE92157.1| transcription termination/antitermination factor NusG [Escherichia
           coli IHE3034]
 gi|300300400|gb|EFJ56785.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 185-1]
 gi|300306521|gb|EFJ61041.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 200-1]
 gi|300409476|gb|EFJ93014.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 45-1]
 gi|301160644|emb|CBW20175.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305854602|gb|EFM55038.1| transcription antitermination protein NusG [Escherichia coli NC101]
 gi|307556125|gb|ADN48900.1| transcription antitermination protein NusG [Escherichia coli ABU
           83972]
 gi|307628401|gb|ADN72705.1| transcription antitermination protein NusG [Escherichia coli UM146]
 gi|308750663|gb|ADO50415.1| NusG antitermination factor [Enterobacter cloacae SCF1]
 gi|312290039|gb|EFR17926.1| transcription termination/antitermination factor NusG [Escherichia
           coli 2362-75]
 gi|312915253|dbj|BAJ39227.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|312948556|gb|ADR29383.1| transcription antitermination protein NusG [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288350|gb|EFU47748.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 110-3]
 gi|315294336|gb|EFU53687.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 153-1]
 gi|315300755|gb|EFU59980.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 16-3]
 gi|320088579|emb|CBY98338.1| Transcription antitermination protein nusG [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|320197123|gb|EFW71741.1| Transcription antitermination protein NusG [Escherichia coli
           WV_060327]
 gi|321223348|gb|EFX48415.1| Transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322616258|gb|EFY13168.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617299|gb|EFY14201.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625929|gb|EFY22744.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626673|gb|EFY23475.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631508|gb|EFY28265.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635221|gb|EFY31939.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642612|gb|EFY39206.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646785|gb|EFY43289.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650784|gb|EFY47177.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655917|gb|EFY52218.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657316|gb|EFY53595.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665578|gb|EFY61763.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669761|gb|EFY65906.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670960|gb|EFY67092.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322679216|gb|EFY75269.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679374|gb|EFY75421.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322688141|gb|EFY84105.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717098|gb|EFZ08669.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323132483|gb|ADX19913.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323190161|gb|EFZ75439.1| transcription termination/antitermination factor NusG [Escherichia
           coli RN587/1]
 gi|323193409|gb|EFZ78619.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200671|gb|EFZ85744.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202160|gb|EFZ87216.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209271|gb|EFZ94206.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211596|gb|EFZ96433.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218066|gb|EGA02779.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221355|gb|EGA05777.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225718|gb|EGA09939.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230994|gb|EGA15111.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235776|gb|EGA19858.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240090|gb|EGA24136.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242577|gb|EGA26599.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249715|gb|EGA33622.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252598|gb|EGA36439.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256908|gb|EGA40620.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262070|gb|EGA45634.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323263925|gb|EGA47439.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268462|gb|EGA51932.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|323948846|gb|EGB44743.1| transcription termination/antitermination protein NusG [Escherichia
           coli H252]
 gi|323953805|gb|EGB49612.1| transcription termination/antitermination protein NusG [Escherichia
           coli H263]
 gi|324009471|gb|EGB78690.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 57-2]
 gi|324015277|gb|EGB84496.1| transcription termination/antitermination factor NusG [Escherichia
           coli MS 60-1]
 gi|326625858|gb|EGE32203.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629582|gb|EGE35925.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|328536459|gb|EGF62807.1| transcription termination/antitermination factor NusG [Klebsiella
           sp. MS 92-3]
 gi|330908299|gb|EGH36818.1| transcription antitermination protein NusG [Escherichia coli AA86]
 gi|331041301|gb|EGI13453.1| transcription termination/antitermination factor NusG [Escherichia
           coli M605]
 gi|331052324|gb|EGI24362.1| transcription termination/antitermination factor NusG [Escherichia
           coli TA206]
          Length = 181

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|15640350|ref|NP_229977.1| transcription antitermination protein NusG [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121592079|ref|ZP_01679061.1| transcription antitermination protein NusG [Vibrio cholerae
           2740-80]
 gi|147673290|ref|YP_001218591.1| transcription antitermination protein NusG [Vibrio cholerae O395]
 gi|153827148|ref|ZP_01979815.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2]
 gi|227080535|ref|YP_002809086.1| transcription antitermination protein NusG [Vibrio cholerae M66-2]
 gi|229506882|ref|ZP_04396390.1| transcription antitermination protein NusG [Vibrio cholerae BX
           330286]
 gi|229508687|ref|ZP_04398181.1| transcription antitermination protein NusG [Vibrio cholerae B33]
 gi|229516069|ref|ZP_04405520.1| transcription antitermination protein NusG [Vibrio cholerae RC9]
 gi|229519861|ref|ZP_04409294.1| transcription antitermination protein NusG [Vibrio cholerae TM
           11079-80]
 gi|229527016|ref|ZP_04416412.1| transcription antitermination protein NusG [Vibrio cholerae
           12129(1)]
 gi|229606396|ref|YP_002877044.1| transcription antitermination protein NusG [Vibrio cholerae
           MJ-1236]
 gi|254292282|ref|ZP_04963028.1| transcription antitermination protein NusG [Vibrio cholerae
           AM-19226]
 gi|254851632|ref|ZP_05240982.1| transcription antitermination protein NusG [Vibrio cholerae MO10]
 gi|255747124|ref|ZP_05421067.1| transcription antitermination protein NusG [Vibrio cholera CIRS
           101]
 gi|258620708|ref|ZP_05715743.1| transcription antitermination protein NusG [Vibrio mimicus VM573]
 gi|258624493|ref|ZP_05719439.1| transcription antitermination protein NusG [Vibrio mimicus VM603]
 gi|262166950|ref|ZP_06034670.1| transcription antitermination protein NusG [Vibrio cholerae RC27]
 gi|262172579|ref|ZP_06040257.1| transcription antitermination protein NusG [Vibrio mimicus MB-451]
 gi|262401584|ref|ZP_06078151.1| transcription antitermination protein NusG [Vibrio sp. RC586]
 gi|297582227|ref|ZP_06944143.1| transcription antitermination protein NusG [Vibrio cholerae RC385]
 gi|298501284|ref|ZP_07011081.1| transcription termination/antitermination factor NusG [Vibrio
           cholerae MAK 757]
 gi|18203205|sp|Q9KV35|NUSG_VIBCH RecName: Full=Transcription antitermination protein nusG
 gi|9654736|gb|AAF93496.1| transcription antitermination protein NusG [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121546217|gb|EAX56537.1| transcription antitermination protein NusG [Vibrio cholerae
           2740-80]
 gi|146315173|gb|ABQ19712.1| transcription antitermination protein NusG [Vibrio cholerae O395]
 gi|149738976|gb|EDM53292.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2]
 gi|150421804|gb|EDN13805.1| transcription antitermination protein NusG [Vibrio cholerae
           AM-19226]
 gi|227008423|gb|ACP04635.1| transcription antitermination protein NusG [Vibrio cholerae M66-2]
 gi|227012179|gb|ACP08389.1| transcription antitermination protein NusG [Vibrio cholerae O395]
 gi|229335539|gb|EEO01020.1| transcription antitermination protein NusG [Vibrio cholerae
           12129(1)]
 gi|229343102|gb|EEO08087.1| transcription antitermination protein NusG [Vibrio cholerae TM
           11079-80]
 gi|229346972|gb|EEO11939.1| transcription antitermination protein NusG [Vibrio cholerae RC9]
 gi|229354322|gb|EEO19251.1| transcription antitermination protein NusG [Vibrio cholerae B33]
 gi|229355987|gb|EEO20906.1| transcription antitermination protein NusG [Vibrio cholerae BX
           330286]
 gi|229369051|gb|ACQ59474.1| transcription antitermination protein NusG [Vibrio cholerae
           MJ-1236]
 gi|254847337|gb|EET25751.1| transcription antitermination protein NusG [Vibrio cholerae MO10]
 gi|255735173|gb|EET90575.1| transcription antitermination protein NusG [Vibrio cholera CIRS
           101]
 gi|258583242|gb|EEW08045.1| transcription antitermination protein NusG [Vibrio mimicus VM603]
 gi|258586906|gb|EEW11620.1| transcription antitermination protein NusG [Vibrio mimicus VM573]
 gi|261893655|gb|EEY39641.1| transcription antitermination protein NusG [Vibrio mimicus MB-451]
 gi|262024655|gb|EEY43336.1| transcription antitermination protein NusG [Vibrio cholerae RC27]
 gi|262352299|gb|EEZ01428.1| transcription antitermination protein NusG [Vibrio sp. RC586]
 gi|297533528|gb|EFH72373.1| transcription antitermination protein NusG [Vibrio cholerae RC385]
 gi|297539975|gb|EFH76039.1| transcription termination/antitermination factor NusG [Vibrio
           cholerae MAK 757]
 gi|327483189|gb|AEA77596.1| Transcription antitermination protein NusG [Vibrio cholerae
           LMA3894-4]
          Length = 182

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|219848385|ref|YP_002462818.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485]
 gi|219542644|gb|ACL24382.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485]
          Length = 187

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  +++  R++   +   +  + +P+E  + ++ G++    ++ +PG
Sbjct: 15  RWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYPG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  +TD  ++ +++TP V  F+G G  P+P+ D E++ I+ Q+E   + P   V +
Sbjct: 75  YVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQME--GETPKVRVSY 132

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + G+ V + DGPF  F GIV ++D E+ RV V V  FGR  PVEL + QV K+V
Sbjct: 133 QKGQAVKIIDGPFTDFEGIVDSIDHERGRVRVLVSFFGREAPVELDFLQVTKLV 186


>gi|197286619|ref|YP_002152491.1| transcription antitermination protein NusG [Proteus mirabilis
           HI4320]
 gi|227355188|ref|ZP_03839597.1| transcription antitermination protein [Proteus mirabilis ATCC
           29906]
 gi|194684106|emb|CAR45505.1| transcription antitermination protein [Proteus mirabilis HI4320]
 gi|227164697|gb|EEI49551.1| transcription antitermination protein [Proteus mirabilis ATCC
           29906]
          Length = 181

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +  + ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLNEMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H +++ P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|188532309|ref|YP_001906106.1| transcription antitermination protein NusG [Erwinia tasmaniensis
           Et1/99]
 gi|259906924|ref|YP_002647280.1| transcription antitermination protein NusG [Erwinia pyrifoliae
           Ep1/96]
 gi|188027351|emb|CAO95196.1| Transcription antitermination protein [Erwinia tasmaniensis Et1/99]
 gi|224962546|emb|CAX54001.1| Transcription antitermination protein [Erwinia pyrifoliae Ep1/96]
 gi|283476717|emb|CAY72546.1| Transcription antitermination protein nusG [Erwinia pyrifoliae DSM
           12163]
 gi|310766069|gb|ADP11019.1| transcription antitermination protein NusG [Erwinia sp. Ejp617]
          Length = 181

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  ++ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|89095350|ref|ZP_01168267.1| transcription antitermination protein NusG [Oceanospirillum sp.
           MED92]
 gi|89080392|gb|EAR59647.1| transcription antitermination protein NusG [Oceanospirillum sp.
           MED92]
          Length = 177

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RW++V  YS  EK+ + ++  R+    +  L  E+ +P+E VV +R G+K  SER+F
Sbjct: 1   MSKRWFVVHAYSGYEKRVMNTLKERIELHSMQDLFGEVLVPTEEVVEIRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL+   M D+ +H +K+TP V+GF+G     P+P+T++E   I+++VE+ V +P  
Sbjct: 61  YPGYVLVHMDMNDESWHLVKNTPHVLGFIGGTAGKPAPITEAEANEILSRVESGVDKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPFA F+ +V+ ++ EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFADFDAVVEEINYEKNKLQVAVQIFGRTTPVELDFIQVEK 176


>gi|271498787|ref|YP_003331812.1| NusG antitermination factor [Dickeya dadantii Ech586]
 gi|270342342|gb|ACZ75107.1| NusG antitermination factor [Dickeya dadantii Ech586]
          Length = 181

 Score =  177 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|269837636|ref|YP_003319864.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745]
 gi|269786899|gb|ACZ39042.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745]
          Length = 200

 Score =  177 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K  +++  R+    +   + E+ +P++  V +R G++ + +R+ FPG
Sbjct: 29  QWYVVHTYSGYENKVRQNLLHRIETMDMADKIFEVVVPTQEEVEIRSGQRHSVQRKVFPG 88

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++ +M D  ++ +++TP V GF+G G  P+P+ + E++ IM  +E   + P   V  
Sbjct: 89  YVLVRMIMDDDSWYVVRNTPGVTGFVGMGNKPTPLGEDEVQAIMRGME--AEAPRVKVSL 146

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            VG+ V + DGPF+ F G V  +D+EK +V V V  FGR TPV L + QVE+
Sbjct: 147 AVGDVVRIIDGPFSDFRGTVDEIDQEKGKVRVLVSFFGRETPVTLDFLQVER 198


>gi|163847740|ref|YP_001635784.1| transcription termination/antitermination factor NusG [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525603|ref|YP_002570074.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl]
 gi|163669029|gb|ABY35395.1| transcription termination/antitermination factor NusG [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449482|gb|ACM53748.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl]
          Length = 187

 Score =  177 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  +++  R++   +   +  + +P+E  + ++ G++    ++ +PG
Sbjct: 15  RWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYPG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  +TD  ++ +++TP V  F+G G  P+P+ D E++ I+ Q+E   + P   V +
Sbjct: 75  YVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQME--GETPKVRVSY 132

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + G+ V + DGPF  F GIV  +D E+ RV V V  FGR  PVEL + QV ++V
Sbjct: 133 QKGQAVKIIDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 186


>gi|92112542|ref|YP_572470.1| transcription antitermination protein NusG [Chromohalobacter
           salexigens DSM 3043]
 gi|91795632|gb|ABE57771.1| transcription antitermination protein nusG [Chromohalobacter
           salexigens DSM 3043]
          Length = 177

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 81/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK  + S+  R+   G++    EI +P+E VV +R G++  SER+F
Sbjct: 1   MSKRWYVVHAYSGFEKHVMRSLMERVKMYGMEDQFGEILVPTEEVVEMRDGKRRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H + +TP+V+GF+G   E P+P+T  E + I+ +V+    +P  
Sbjct: 61  YPGYVLVEMEMTDASWHLVNETPRVMGFIGGTPEKPAPITQKEADGILRRVQDGTDKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              F+ GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTLFDPGETVRVVDGPFADFNGVVEEVNYEKSRLQVSVLIFGRSTPVELEFAQVEK 176


>gi|283836718|ref|ZP_06356459.1| transcription termination/antitermination factor NusG [Citrobacter
           youngae ATCC 29220]
 gi|291067265|gb|EFE05374.1| transcription termination/antitermination factor NusG [Citrobacter
           youngae ATCC 29220]
          Length = 181

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|83648864|ref|YP_437299.1| transcription antitermination protein NusG [Hahella chejuensis KCTC
           2396]
 gi|83636907|gb|ABC32874.1| transcription termination/antitermination factor NusG [Hahella
           chejuensis KCTC 2396]
          Length = 177

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 83/176 (47%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RW++VQ YS  EK  + S+  R+   G++    EI +P+E VV +++G+K  SER+F
Sbjct: 1   MSKRWFVVQAYSGFEKHVMRSLKERIVLKGMEDQFGEILVPTEEVVEMKEGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K T +V+GF+G   + P+P++D E E I+ +VE+   +P  
Sbjct: 61  YPGYVLVQMEMNDDTWHLVKSTTRVLGFIGGTPDKPAPISDKEAEAILRRVESGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEAGEVVRVIDGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVDLEFSQVEK 176


>gi|292486722|ref|YP_003529592.1| transcription antitermination protein nusG [Erwinia amylovora
           CFBP1430]
 gi|292897955|ref|YP_003537324.1| transcription antitermination protein [Erwinia amylovora ATCC
           49946]
 gi|291197803|emb|CBJ44898.1| transcription antitermination protein [Erwinia amylovora ATCC
           49946]
 gi|291552139|emb|CBA19176.1| Transcription antitermination protein nusG [Erwinia amylovora
           CFBP1430]
          Length = 181

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|241664554|ref|YP_002982914.1| transcription antitermination protein NusG [Ralstonia pickettii
           12D]
 gi|240866581|gb|ACS64242.1| NusG antitermination factor [Ralstonia pickettii 12D]
          Length = 194

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R GL HL  +I +PSE V+  + GRK  +ERR FP
Sbjct: 20  KRWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYV ++  MTD+ +H +K+T KV GF+G  G  PSP++ SE++ IM Q++  V++P    
Sbjct: 80  GYVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKT 139

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194


>gi|289641396|ref|ZP_06473560.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata]
 gi|289508732|gb|EFD29667.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata]
          Length = 269

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 2/174 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+S   ++  + +I +P+E V  ++ G++   +++ +PGY
Sbjct: 96  WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVIKNGKRQLVQQKKYPGY 155

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122
           + ++  +TD+ +  +++TP V GF+G    PSP+   E+  I+       ++        
Sbjct: 156 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRTEEVLSILAPPAPREKKVETVRVQE 215

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVGE V V DGPFA+    +  ++ +  R+ V V IFGR TPVEL +NQV KI
Sbjct: 216 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 269


>gi|255067813|ref|ZP_05319668.1| transcription termination/antitermination factor NusG [Neisseria
           sicca ATCC 29256]
 gi|298370604|ref|ZP_06981919.1| transcription termination/antitermination factor NusG [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|255047904|gb|EET43368.1| transcription termination/antitermination factor NusG [Neisseria
           sicca ATCC 29256]
 gi|298281214|gb|EFI22704.1| transcription termination/antitermination factor NusG [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 177

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+VQ YS  EK   +++  R++R G++    +I +P E VV ++ GRK  SER+F
Sbjct: 1   MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G     P+P++  E + I+ QV + V++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRSGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNGIV  V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177


>gi|148263129|ref|YP_001229835.1| NusG antitermination factor [Geobacter uraniireducens Rf4]
 gi|146396629|gb|ABQ25262.1| transcription antitermination protein nusG [Geobacter
           uraniireducens Rf4]
          Length = 175

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY V  YS  E K   S+  R+   GL+    EI IP E VV ++KG K  S R+F
Sbjct: 1   MAHKWYGVHTYSGFENKVRLSLSERIKNLGLEDKFGEILIPCETVVELKKGEKRTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + D+ +H +K+T KV GF+G G NP  + D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVNMELDDETWHVVKETSKVTGFVG-GNNPFAIPDDEVAKITRRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F G+V++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174


>gi|238785545|ref|ZP_04629526.1| Transcription antitermination protein nusG [Yersinia bercovieri
           ATCC 43970]
 gi|238713530|gb|EEQ05561.1| Transcription antitermination protein nusG [Yersinia bercovieri
           ATCC 43970]
          Length = 181

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|187476522|ref|YP_784546.1| transcription antitermination protein NusG [Bordetella avium 197N]
 gi|115421108|emb|CAJ47592.1| transcription antitermination protein [Bordetella avium 197N]
          Length = 177

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 86/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+ L      I +PSE VV V+ G+K  +ERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I++Q+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILSQMEEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176


>gi|238918138|ref|YP_002931652.1| transcription antitermination protein NusG [Edwardsiella ictaluri
           93-146]
 gi|238867706|gb|ACR67417.1| transcription termination/antitermination factor NusG, putative
           [Edwardsiella ictaluri 93-146]
          Length = 181

 Score =  177 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQIGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|27364611|ref|NP_760139.1| transcription antitermination protein NusG [Vibrio vulnificus
           CMCP6]
 gi|37681348|ref|NP_935957.1| transcription antitermination protein NusG [Vibrio vulnificus
           YJ016]
 gi|320155005|ref|YP_004187384.1| transcription antitermination protein NusG [Vibrio vulnificus
           MO6-24/O]
 gi|32129818|sp|Q8DD25|NUSG_VIBVU RecName: Full=Transcription antitermination protein nusG
 gi|27360730|gb|AAO09666.1| transcription termination/antitermination factor NusG [Vibrio
           vulnificus CMCP6]
 gi|37200099|dbj|BAC95928.1| transcription antiterminator [Vibrio vulnificus YJ016]
 gi|319930317|gb|ADV85181.1| transcription antitermination protein NusG [Vibrio vulnificus
           MO6-24/O]
          Length = 182

 Score =  177 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEEYFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P++D E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEADAILNRLEKASEAPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVGE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEVGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|330444936|ref|ZP_08308590.1| transcription termination/antitermination factor NusG
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493054|dbj|GAA03087.1| transcription termination/antitermination factor NusG
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 181

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E VV VR G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL+  VM D+ +H ++  P+V+GF+G   + P+P++D E + I+N+++ A + PV   
Sbjct: 67  GYVLVNMVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG +++VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 127 VFEPGEVVRVTDGPFADFNGTIESVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180


>gi|22124394|ref|NP_667817.1| transcription antitermination protein NusG [Yersinia pestis KIM 10]
 gi|45442869|ref|NP_994408.1| transcription antitermination protein NusG [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594633|ref|YP_068824.1| transcription antitermination protein NusG [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809615|ref|YP_653531.1| transcription antitermination protein NusG [Yersinia pestis
           Antiqua]
 gi|108810380|ref|YP_646147.1| transcription antitermination protein NusG [Yersinia pestis
           Nepal516]
 gi|123440670|ref|YP_001004663.1| transcription antitermination protein NusG [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|145600993|ref|YP_001165069.1| transcription antitermination protein NusG [Yersinia pestis
           Pestoides F]
 gi|153949507|ref|YP_001402816.1| transcription antitermination protein NusG [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997214|ref|ZP_02022321.1| transcription antitermination protein [Yersinia pestis CA88-4125]
 gi|162421043|ref|YP_001607191.1| transcription antitermination protein NusG [Yersinia pestis Angola]
 gi|165928331|ref|ZP_02224163.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938150|ref|ZP_02226709.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166012043|ref|ZP_02232941.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166214413|ref|ZP_02240448.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402411|ref|ZP_02307871.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167422947|ref|ZP_02314700.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426816|ref|ZP_02318569.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170022592|ref|YP_001719097.1| transcription antitermination protein NusG [Yersinia
           pseudotuberculosis YPIII]
 gi|186893634|ref|YP_001870746.1| transcription antitermination protein NusG [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930757|ref|YP_002348632.1| transcription antitermination protein NusG [Yersinia pestis CO92]
 gi|229837498|ref|ZP_04457660.1| transcription termination factor [Yersinia pestis Pestoides A]
 gi|229839434|ref|ZP_04459593.1| transcription termination factor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229899996|ref|ZP_04515136.1| transcription termination factor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900555|ref|ZP_04515681.1| transcription termination factor [Yersinia pestis Nepal516]
 gi|238752784|ref|ZP_04614252.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC
           43380]
 gi|238760251|ref|ZP_04621395.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC
           35236]
 gi|238790611|ref|ZP_04634376.1| Transcription antitermination protein nusG [Yersinia frederiksenii
           ATCC 33641]
 gi|238794964|ref|ZP_04638561.1| Transcription antitermination protein nusG [Yersinia intermedia
           ATCC 29909]
 gi|270488911|ref|ZP_06205985.1| transcription termination/antitermination factor NusG [Yersinia
           pestis KIM D27]
 gi|294505420|ref|YP_003569482.1| transcription antitermination protein NusG [Yersinia pestis
           Z176003]
 gi|332159907|ref|YP_004296484.1| transcription antitermination protein NusG [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|32129819|sp|Q8ZAP0|NUSG_YERPE RecName: Full=Transcription antitermination protein nusG
 gi|21957175|gb|AAM84068.1|AE013648_10 component in transcription antitermination [Yersinia pestis KIM 10]
 gi|45437735|gb|AAS63285.1| transcription antitermination protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51587915|emb|CAH19518.1| transcription antitermination protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|108774028|gb|ABG16547.1| transcription antitermination protein nusG [Yersinia pestis
           Nepal516]
 gi|108781528|gb|ABG15586.1| transcription antitermination protein nusG [Yersinia pestis
           Antiqua]
 gi|115349368|emb|CAL22339.1| transcription antitermination protein [Yersinia pestis CO92]
 gi|122087631|emb|CAL10413.1| transcription antitermination protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|145212689|gb|ABP42096.1| transcription antitermination protein nusG [Yersinia pestis
           Pestoides F]
 gi|149289322|gb|EDM39401.1| transcription antitermination protein [Yersinia pestis CA88-4125]
 gi|152961002|gb|ABS48463.1| transcription termination/antitermination factor NusG [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353858|gb|ABX87806.1| transcription termination/antitermination factor NusG [Yersinia
           pestis Angola]
 gi|165913811|gb|EDR32429.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165919670|gb|EDR37003.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989038|gb|EDR41339.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204417|gb|EDR48897.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166957158|gb|EDR55179.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048191|gb|EDR59599.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054198|gb|EDR64023.1| transcription termination/antitermination factor NusG [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169749126|gb|ACA66644.1| NusG antitermination factor [Yersinia pseudotuberculosis YPIII]
 gi|186696660|gb|ACC87289.1| NusG antitermination factor [Yersinia pseudotuberculosis PB1/+]
 gi|229682375|gb|EEO78465.1| transcription termination factor [Yersinia pestis Nepal516]
 gi|229686981|gb|EEO79057.1| transcription termination factor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695800|gb|EEO85847.1| transcription termination factor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229704186|gb|EEO91197.1| transcription termination factor [Yersinia pestis Pestoides A]
 gi|238701515|gb|EEP94088.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC
           35236]
 gi|238708982|gb|EEQ01232.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC
           43380]
 gi|238721280|gb|EEQ12955.1| Transcription antitermination protein nusG [Yersinia frederiksenii
           ATCC 33641]
 gi|238725722|gb|EEQ17279.1| Transcription antitermination protein nusG [Yersinia intermedia
           ATCC 29909]
 gi|262367414|gb|ACY63971.1| transcription antitermination protein NusG [Yersinia pestis
           D182038]
 gi|270337415|gb|EFA48192.1| transcription termination/antitermination factor NusG [Yersinia
           pestis KIM D27]
 gi|294355879|gb|ADE66220.1| transcription antitermination protein NusG [Yersinia pestis
           Z176003]
 gi|318607543|emb|CBY29041.1| transcription antitermination protein NusG [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|320013652|gb|ADV97223.1| transcription termination factor [Yersinia pestis biovar Medievalis
           str. Harbin 35]
 gi|325664137|gb|ADZ40781.1| transcription antitermination protein NusG [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863585|emb|CBX73697.1| transcription antitermination protein nusG [Yersinia enterocolitica
           W22703]
          Length = 181

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|293394017|ref|ZP_06638321.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
 gi|291423457|gb|EFE96682.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
          Length = 181

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|319639537|ref|ZP_07994284.1| transcription antitermination protein nusG [Neisseria mucosa C102]
 gi|317399108|gb|EFV79782.1| transcription antitermination protein nusG [Neisseria mucosa C102]
          Length = 177

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+VQ YS  EK   +++  R++R  ++    +I +P E VV ++ GRK  SER+F
Sbjct: 1   MSKRWYVVQAYSGFEKNVQKTLKERIARENMEDYFGQILVPVEEVVDIKNGRKTISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G  G  P P++  + + I+ Q +  V++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNGIV  V+ E++R+ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177


>gi|212709021|ref|ZP_03317149.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM
           30120]
 gi|212688310|gb|EEB47838.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM
           30120]
          Length = 181

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++ L  ++ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|315499731|ref|YP_004088534.1| nusg antitermination factor [Asticcacaulis excentricus CB 48]
 gi|315417743|gb|ADU14383.1| NusG antitermination factor [Asticcacaulis excentricus CB 48]
          Length = 189

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 90/175 (51%), Positives = 129/175 (73%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  ES+  +    GL+   +EI +P+E VV VR+GRK NSER+FFP
Sbjct: 15  HKWYIVHAYSNFEKKVAESLREQAKAQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFP 74

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  +TD+ +H +K+TPKV GFLG+G  P PV++ E++ I+  VE A ++P + + 
Sbjct: 75  GYVLVKMELTDEAFHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVEVAAEKPKTVLS 134

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           F++GE++ V DGPFASF+G+V++VD++ +R+ V V IFGR TPV+L + QVEK V
Sbjct: 135 FDIGEKIKVIDGPFASFDGVVESVDQDHARLKVSVSIFGRATPVDLEFGQVEKTV 189


>gi|52424260|ref|YP_087397.1| transcription antitermination protein NusG [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306312|gb|AAU36812.1| NusG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 184

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +  + ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 8   KRWYVLQAFSGFEGRVATTLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H ++  P+V+GF+G   + P P++  E + I+N+VE    +P    
Sbjct: 68  GYVLVEMEMNDDTWHLVRSVPRVMGFIGGTPDRPLPISKREADLILNRVEENADKPRPKN 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 128 TFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181


>gi|261364713|ref|ZP_05977596.1| transcription termination/antitermination factor NusG [Neisseria
           mucosa ATCC 25996]
 gi|288567009|gb|EFC88569.1| transcription termination/antitermination factor NusG [Neisseria
           mucosa ATCC 25996]
          Length = 177

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+VQ YS  EK   +++  R++R G++    +I +P E VV ++ GRK  SER+F
Sbjct: 1   MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G     P+P++  E + I+ QV   V++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRTGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNGIV  V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177


>gi|167629453|ref|YP_001679952.1| transcription termination/antitermination factor nusg
           [Heliobacterium modesticaldum Ice1]
 gi|167592193|gb|ABZ83941.1| transcription termination/antitermination factor nusg
           [Heliobacterium modesticaldum Ice1]
          Length = 176

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  R+    ++  +  I +P E  V ++ G++  ++R+ 
Sbjct: 3   MEKLWYVIHTYSGYENKVKANLERRVESMNMEDKIFRILVPMEDEVEIKNGKRKVTKRKV 62

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYV+++ +MTD  ++ +++TP V GF+G G  P P+  SE+ HI+  +     R    
Sbjct: 63  FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGPGTKPIPLQPSEVAHILKSMGYDEARTRHD 122

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +  E V V  GPF  F G ++++  EK ++ V V +FGR TPVEL ++QVEK+
Sbjct: 123 FALK--ENVRVISGPFQDFVGTIEDIQPEKGKLKVLVSMFGRETPVELDFSQVEKV 176


>gi|157147225|ref|YP_001454544.1| transcription antitermination protein NusG [Citrobacter koseri ATCC
           BAA-895]
 gi|261340891|ref|ZP_05968749.1| transcription termination/antitermination factor NusG [Enterobacter
           cancerogenus ATCC 35316]
 gi|283787345|ref|YP_003367210.1| transcription antitermination protein [Citrobacter rodentium
           ICC168]
 gi|296100610|ref|YP_003610756.1| transcription antitermination protein NusG [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|157084430|gb|ABV14108.1| hypothetical protein CKO_03008 [Citrobacter koseri ATCC BAA-895]
 gi|282950799|emb|CBG90475.1| transcription antitermination protein [Citrobacter rodentium
           ICC168]
 gi|288316944|gb|EFC55882.1| transcription termination/antitermination factor NusG [Enterobacter
           cancerogenus ATCC 35316]
 gi|295055069|gb|ADF59807.1| transcription antitermination protein NusG [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295095132|emb|CBK84222.1| transcription antitermination protein nusG [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 181

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180


>gi|206579787|ref|YP_002241081.1| transcription termination/antitermination factor NusG [Klebsiella
           pneumoniae 342]
 gi|260596081|ref|YP_003208652.1| transcription antitermination protein NusG [Cronobacter turicensis
           z3032]
 gi|288937726|ref|YP_003441785.1| NusG antitermination factor [Klebsiella variicola At-22]
 gi|290513234|ref|ZP_06552595.1| transcription termination/antitermination factor NusG [Klebsiella
           sp. 1_1_55]
 gi|206568845|gb|ACI10621.1| transcription termination/antitermination factor NusG [Klebsiella
           pneumoniae 342]
 gi|260215258|emb|CBA27161.1| Transcription antitermination protein nusG [Cronobacter turicensis
           z3032]
 gi|288892435|gb|ADC60753.1| NusG antitermination factor [Klebsiella variicola At-22]
 gi|289774331|gb|EFD82338.1| transcription termination/antitermination factor NusG [Klebsiella
           sp. 1_1_55]
          Length = 181

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|197122681|ref|YP_002134632.1| NusG antitermination factor [Anaeromyxobacter sp. K]
 gi|220917464|ref|YP_002492768.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172530|gb|ACG73503.1| NusG antitermination factor [Anaeromyxobacter sp. K]
 gi|219955318|gb|ACL65702.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 179

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K  +S+  R+ +  L     E+ IP E V  + KG K  S+R+F
Sbjct: 1   MAKKWYVVHTYSGFENKVKKSLDERIRQHSLQDAFGEVLIPMEVVQEMVKGEKKTSKRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117
           FPGY+L+   M+ + +H +K TPKV GF+G  + P  V    D E++ +  Q+     +P
Sbjct: 61  FPGYILVNMEMSLQTWHLVKGTPKVTGFVGNAKTPEQVPAVSDVEVQRLTTQISEGSLKP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              V FE G+ V V+DGPF++FNG V+ V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178


>gi|222056717|ref|YP_002539079.1| NusG antitermination factor [Geobacter sp. FRC-32]
 gi|221566006|gb|ACM21978.1| NusG antitermination factor [Geobacter sp. FRC-32]
          Length = 175

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY V  YS  E K   S+  R+   GL+    E+ IP E VV ++KG K  S R+F
Sbjct: 1   MAHKWYGVHTYSGFENKVRLSLLERIKNLGLEEKFGEVLIPCETVVELKKGEKRTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + D  +H +K+T KV GF+G G NP  + D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVNMELDDDTWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITQRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F G+V++V  EK ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFAGVVEDVKPEKGKLRVMVSIFGRATPVELEFMQVEK 174


>gi|261254083|ref|ZP_05946656.1| transcription antitermination protein NusG [Vibrio orientalis CIP
           102891]
 gi|323492149|ref|ZP_08097310.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG
           20546]
 gi|260937474|gb|EEX93463.1| transcription antitermination protein NusG [Vibrio orientalis CIP
           102891]
 gi|323313600|gb|EGA66703.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG
           20546]
          Length = 182

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V+DGPFA FNG V+ VD +KSRV V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEKL 181


>gi|323498408|ref|ZP_08103405.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM
           21326]
 gi|323316550|gb|EGA69564.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM
           21326]
          Length = 182

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|269137529|ref|YP_003294229.1| transcription antiterminator [Edwardsiella tarda EIB202]
 gi|294634227|ref|ZP_06712772.1| transcription termination/antitermination factor NusG [Edwardsiella
           tarda ATCC 23685]
 gi|267983189|gb|ACY83018.1| transcription antiterminator [Edwardsiella tarda EIB202]
 gi|291092352|gb|EFE24913.1| transcription termination/antitermination factor NusG [Edwardsiella
           tarda ATCC 23685]
 gi|304557602|gb|ADM40266.1| Transcription antitermination protein NusG [Edwardsiella tarda
           FL6-60]
          Length = 181

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|56415975|ref|YP_153050.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364902|ref|YP_002144539.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56130232|gb|AAV79738.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096379|emb|CAR61984.1| transcription antitermination protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 181

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN ++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNCLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|307128974|ref|YP_003880990.1| transcription termination factor [Dickeya dadantii 3937]
 gi|306526503|gb|ADM96433.1| transcription termination factor [Dickeya dadantii 3937]
          Length = 181

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|238025919|ref|YP_002910150.1| transcription antitermination protein NusG [Burkholderia glumae
           BGR1]
 gi|237875113|gb|ACR27446.1| Transcription antitermination protein NusG [Burkholderia glumae
           BGR1]
          Length = 185

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV VR G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185


>gi|320540639|ref|ZP_08040289.1| transcription termination factor [Serratia symbiotica str. Tucson]
 gi|320029570|gb|EFW11599.1| transcription termination factor [Serratia symbiotica str. Tucson]
          Length = 181

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLYDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|90417547|ref|ZP_01225468.1| transcription antitermination protein NusG [marine gamma
           proteobacterium HTCC2207]
 gi|90330639|gb|EAS45929.1| transcription antitermination protein NusG [marine gamma
           proteobacterium HTCC2207]
          Length = 175

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 110/174 (63%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EKK   ++  R+    L     EI +P+E VV +R G K  SER FFP
Sbjct: 1   MRWYVVHAYSGYEKKVSLALQDRIQLHNLQDKFGEILVPTEEVVEMRGGEKRTSERMFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  + D+ +H +K+TP+V+GF+G   + P+P+TD E + I+ +V  + + P    
Sbjct: 61  GYVLVQMELDDESWHLVKETPRVMGFIGGKADKPAPITDKEADLILQRVHDSEEAPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+ GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 MFEPGELVRVTYGPFNDFNGTVEEVNYEKSRLRVAVSIFGRSTPVELEFTQVEK 174


>gi|297180346|gb|ADI16563.1| transcription antiterminator [uncultured gamma proteobacterium
           HF0010_01E20]
          Length = 177

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+V  YS  EK    ++  R++ S       EI +P+E VV +R G+K  SER+F
Sbjct: 1   MSKNWYVVHAYSGFEKNVARALQERVNLSNHQENFGEILVPTEEVVEMRGGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D+ +H +K TP+V+GF+G   + P+P++  E   I+++V A  ++   
Sbjct: 61  FPGYVLVEMELNDETWHLVKKTPRVMGFIGGKADQPAPLSTKEAAAILDRVAAGSEKATP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V+DGPF  FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLRVAVTIFGRSTPVELDFGQVEK 176


>gi|330430119|gb|AEC21453.1| transcription antitermination protein NusG [Pusillimonas sp. T7-7]
          Length = 177

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+GL+    +I +PSE VV V+ G+K  +ERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVHKALVERIERAGLETSFGQILVPSEEVVEVKGGKKSITERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I++Q+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPAPISEREVEKILSQMEEGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFGQVEK 176


>gi|261344394|ref|ZP_05972038.1| transcription termination/antitermination factor NusG [Providencia
           rustigianii DSM 4541]
 gi|282567667|gb|EFB73202.1| transcription termination/antitermination factor NusG [Providencia
           rustigianii DSM 4541]
          Length = 181

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLHAMEDYFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|329850796|ref|ZP_08265641.1| transcription termination/antitermination factor NusG
           [Asticcacaulis biprosthecum C19]
 gi|328841111|gb|EGF90682.1| transcription termination/antitermination factor NusG
           [Asticcacaulis biprosthecum C19]
          Length = 191

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/173 (52%), Positives = 127/173 (73%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  ES+  +    GL+   +EI +P+E VV VR+GRK NSER+FFP
Sbjct: 17  HKWYIVHAYSNFEKKVAESLRDQAKSQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFP 76

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K  ++D+ YH +K+TPKV GFLG+G  P PV++ E++ I+  V+AAV+RP   + 
Sbjct: 77  GYVLVKMELSDEAYHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVDAAVERPKPVLA 136

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F++GE+V ++ G FASF+G+V++ D E +R+ V V IFGR TPV+L Y+QVEK
Sbjct: 137 FDIGEKVKITSGHFASFDGVVESADPEHARLRVSVSIFGRATPVDLEYSQVEK 189


>gi|237727884|ref|ZP_04558365.1| transcription antitermination protein NusG [Citrobacter sp. 30_2]
 gi|226910441|gb|EEH96359.1| transcription antitermination protein NusG [Citrobacter sp. 30_2]
          Length = 181

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180


>gi|198282625|ref|YP_002218946.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666542|ref|YP_002424817.1| transcription termination/antitermination factor NusG
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247146|gb|ACH82739.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518755|gb|ACK79341.1| transcription termination/antitermination factor NusG
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 177

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/176 (46%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  +S  EKK    I  R +R GL     EI +P E VV +R G+K +S+R F
Sbjct: 1   MSMRWYVVHAFSGFEKKVQGEIRERANREGLADKFGEILVPVEEVVEMRNGQKTSSQRMF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K TP+V GF+G     P P++D+E   IM++++  V++P  
Sbjct: 61  YPGYVLVQMEMDDVTWHLVKSTPRVTGFVGGSVGRPHPLSDAETNAIMDRIKEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              F+ GE+V V DGPF  FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KFSFDAGEQVRVVDGPFKDFNGVVEEVNFEKSKLRVSVTIFGRSTPVELDFGQVEK 176


>gi|94500508|ref|ZP_01307039.1| transcription antitermination protein NusG [Oceanobacter sp. RED65]
 gi|94427298|gb|EAT12277.1| transcription antitermination protein NusG [Oceanobacter sp. RED65]
          Length = 179

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK+ + S+  ++  +G+     E+ +P+E V+ +R G+K  SER+F
Sbjct: 1   MAMRWYVVHAYSGYEKRVMNSLKEQIEINGMQDCFGEVLVPTEEVIEMRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQ-RPV 118
           +PGYVL++  M D  +H +K+TP+V+GF+G   + P+P+T  E + I+ +V+   + +P 
Sbjct: 61  YPGYVLVEMDMNDATWHLVKETPRVLGFIGGTADKPAPITKREADAILQRVKEGEEGQPT 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               +E GE + V DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 121 HKTIYEPGEMIRVIDGPFADFNGVVETVDYEKSRLKVAVTIFGRSTPVELEFGQVEK 177


>gi|153005087|ref|YP_001379412.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5]
 gi|152028660|gb|ABS26428.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5]
          Length = 179

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K  +S+  R+ +  L     E+ IP E V  + KG K  S+R+F
Sbjct: 1   MAKKWYVVHTYSGFENKVKKSLEERVRQHSLQEQFGEVLIPMEVVQEMVKGEKKTSKRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117
           FPGY+L+   MT   +H +K TPKV GF+G  + P+ V    D E++ +  Q+     +P
Sbjct: 61  FPGYILVNMEMTLDTWHLVKGTPKVTGFVGNAKTPNEVPAVSDVEVQRLTTQISEGSLKP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              V FE G++V V DGPF++FNG V+ V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKVQFEEGDQVRVIDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178


>gi|292492409|ref|YP_003527848.1| transcription termination/antitermination factor NusG
           [Nitrosococcus halophilus Nc4]
 gi|291581004|gb|ADE15461.1| transcription termination/antitermination factor NusG
           [Nitrosococcus halophilus Nc4]
          Length = 177

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ +S  E++   S+  R+ R GL     +I +P+E VV +R+G+K  SER+F
Sbjct: 1   MAKRWYVVQAFSGFEQQVKRSLEERIRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M+D+ +H ++D P+V+GF+G   + P+P+TD+E E I+ +V    ++P  
Sbjct: 61  FPGYVLVQMEMSDETWHLVRDVPRVLGFIGGTSDKPAPITDAEAEKILERVREGAEQPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FE GE V V +GPF  FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KILFEPGEMVRVVEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176


>gi|238756065|ref|ZP_04617388.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC
           29473]
 gi|238705732|gb|EEP98126.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC
           29473]
          Length = 181

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G +  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLQDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|238765324|ref|ZP_04626250.1| Transcription antitermination protein nusG [Yersinia kristensenii
           ATCC 33638]
 gi|238696451|gb|EEP89242.1| Transcription antitermination protein nusG [Yersinia kristensenii
           ATCC 33638]
          Length = 181

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +  + ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLNNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|186477601|ref|YP_001859071.1| transcription antitermination protein NusG [Burkholderia phymatum
           STM815]
 gi|184194060|gb|ACC72025.1| NusG antitermination factor [Burkholderia phymatum STM815]
          Length = 185

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKSVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185


>gi|172087775|ref|YP_205804.2| transcription termination factor NusG [Vibrio fischeri ES114]
 gi|197335330|ref|YP_002157209.1| transcription termination/antitermination factor NusG [Vibrio
           fischeri MJ11]
 gi|171902362|gb|AAW86916.2| transcription termination factor NusG [Vibrio fischeri ES114]
 gi|197316820|gb|ACH66267.1| transcription termination/antitermination factor NusG [Vibrio
           fischeri MJ11]
          Length = 181

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVSQSLREHIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEQASEAPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEAGEVVRVTEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFSQVEK 180


>gi|53720834|ref|YP_109820.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei K96243]
 gi|76809996|ref|YP_335155.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 1710b]
 gi|83721510|ref|YP_443585.1| transcription antitermination protein NusG [Burkholderia
           thailandensis E264]
 gi|126441577|ref|YP_001060763.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 668]
 gi|126454654|ref|YP_001068051.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 1106a]
 gi|167564429|ref|ZP_02357345.1| transcription antitermination protein NusG [Burkholderia
           oklahomensis EO147]
 gi|167571575|ref|ZP_02364449.1| transcription antitermination protein NusG [Burkholderia
           oklahomensis C6786]
 gi|167582635|ref|ZP_02375509.1| transcription antitermination protein NusG [Burkholderia
           thailandensis TXDOH]
 gi|167620749|ref|ZP_02389380.1| transcription antitermination protein NusG [Burkholderia
           thailandensis Bt4]
 gi|167721589|ref|ZP_02404825.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei DM98]
 gi|167740563|ref|ZP_02413337.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 14]
 gi|167817768|ref|ZP_02449448.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 91]
 gi|167826165|ref|ZP_02457636.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 9]
 gi|167838224|ref|ZP_02465083.1| transcription antitermination protein NusG [Burkholderia
           thailandensis MSMB43]
 gi|167847677|ref|ZP_02473185.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei B7210]
 gi|167896249|ref|ZP_02483651.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 7894]
 gi|167904631|ref|ZP_02491836.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912896|ref|ZP_02499987.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei 112]
 gi|167920856|ref|ZP_02507947.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei BCC215]
 gi|217424755|ref|ZP_03456252.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 576]
 gi|237814161|ref|YP_002898612.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei MSHR346]
 gi|242316083|ref|ZP_04815099.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 1106b]
 gi|254198425|ref|ZP_04904846.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei S13]
 gi|254257944|ref|ZP_04948998.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 1710a]
 gi|257137630|ref|ZP_05585892.1| transcription antitermination protein NusG [Burkholderia
           thailandensis E264]
 gi|52211248|emb|CAH37237.1| transcription antitermination protein NusG [Burkholderia
           pseudomallei K96243]
 gi|76579449|gb|ABA48924.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 1710b]
 gi|83655335|gb|ABC39398.1| transcription termination/antitermination factor NusG [Burkholderia
           thailandensis E264]
 gi|126221070|gb|ABN84576.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 668]
 gi|126228296|gb|ABN91836.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 1106a]
 gi|169655165|gb|EDS87858.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei S13]
 gi|217392211|gb|EEC32236.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 576]
 gi|237506347|gb|ACQ98665.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei MSHR346]
 gi|242139322|gb|EES25724.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 1106b]
 gi|254216633|gb|EET06017.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 1710a]
          Length = 185

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185


>gi|270265419|ref|ZP_06193678.1| transcription antitermination protein NusG [Serratia odorifera
           4Rx13]
 gi|270040612|gb|EFA13717.1| transcription antitermination protein NusG [Serratia odorifera
           4Rx13]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180


>gi|260774684|ref|ZP_05883589.1| transcription antitermination protein NusG [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609403|gb|EEX35552.1| transcription antitermination protein NusG [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 182

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|85058107|ref|YP_453809.1| transcription antitermination protein NusG [Sodalis glossinidius
           str. 'morsitans']
 gi|84778627|dbj|BAE73404.1| transcription antitermination protein [Sodalis glossinidius str.
           'morsitans']
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|54310503|ref|YP_131523.1| transcription antitermination protein NusG [Photobacterium
           profundum SS9]
 gi|46914946|emb|CAG21721.1| putative transcription antiterminator protein [Photobacterium
           profundum SS9]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEDYFDEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H ++  P+V+GF+G   + P+P++D E + I+N+++ A + PV   
Sbjct: 67  GYVLVQMVMNDQTWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V++VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 127 VFEPGEVVRVTDGPFADFNGVVEHVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180


>gi|28899701|ref|NP_799306.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260878169|ref|ZP_05890524.1| transcription termination/antitermination factor NusG [Vibrio
           parahaemolyticus AN-5034]
 gi|262392942|ref|YP_003284796.1| transcription antitermination protein NusG [Vibrio sp. Ex25]
 gi|269965855|ref|ZP_06179949.1| transcription antitermination protein NusG [Vibrio alginolyticus
           40B]
 gi|32129809|sp|Q87KP9|NUSG_VIBPA RecName: Full=Transcription antitermination protein nusG
 gi|28807953|dbj|BAC61190.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|262336536|gb|ACY50331.1| transcription antitermination protein NusG [Vibrio sp. Ex25]
 gi|269829519|gb|EEZ83759.1| transcription antitermination protein NusG [Vibrio alginolyticus
           40B]
 gi|308090221|gb|EFO39916.1| transcription termination/antitermination factor NusG [Vibrio
           parahaemolyticus AN-5034]
 gi|328471078|gb|EGF41984.1| transcription antitermination protein NusG [Vibrio parahaemolyticus
           10329]
          Length = 182

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|53723867|ref|YP_104179.1| transcription antitermination protein NusG [Burkholderia mallei
           ATCC 23344]
 gi|121599293|ref|YP_994470.1| transcription antitermination protein NusG [Burkholderia mallei
           SAVP1]
 gi|124385674|ref|YP_001027880.1| transcription antitermination protein NusG [Burkholderia mallei
           NCTC 10229]
 gi|126449300|ref|YP_001082976.1| transcription antitermination protein NusG [Burkholderia mallei
           NCTC 10247]
 gi|238563289|ref|ZP_00439115.2| transcription termination/antitermination factor NusG [Burkholderia
           mallei GB8 horse 4]
 gi|254175266|ref|ZP_04881927.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei ATCC 10399]
 gi|254357132|ref|ZP_04973406.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei 2002721280]
 gi|52427290|gb|AAU47883.1| transcription antitermination protein NusG [Burkholderia mallei
           ATCC 23344]
 gi|121228103|gb|ABM50621.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei SAVP1]
 gi|124293694|gb|ABN02963.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei NCTC 10229]
 gi|126242170|gb|ABO05263.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei NCTC 10247]
 gi|148026196|gb|EDK84281.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei 2002721280]
 gi|160696311|gb|EDP86281.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei ATCC 10399]
 gi|238520997|gb|EEP84452.1| transcription termination/antitermination factor NusG [Burkholderia
           mallei GB8 horse 4]
          Length = 185

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185


>gi|312170787|emb|CBX79048.1| Transcription antitermination protein nusG [Erwinia amylovora ATCC
           BAA-2158]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGMVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|291615763|ref|YP_003518505.1| NusG [Pantoea ananatis LMG 20103]
 gi|304399298|ref|ZP_07381163.1| NusG antitermination factor [Pantoea sp. aB]
 gi|291150793|gb|ADD75377.1| NusG [Pantoea ananatis LMG 20103]
 gi|304353154|gb|EFM17536.1| NusG antitermination factor [Pantoea sp. aB]
 gi|327396029|dbj|BAK13451.1| transcription antitermination protein NusG [Pantoea ananatis
           AJ13355]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  ++ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180


>gi|300714842|ref|YP_003739645.1| Transcription antitermination protein [Erwinia billingiae Eb661]
 gi|299060678|emb|CAX57785.1| Transcription antitermination protein [Erwinia billingiae Eb661]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  ++ +P+E VV +R G++  SER+FFP
Sbjct: 7   MRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMLMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|33594732|ref|NP_882375.1| transcription antitermination protein NusG [Bordetella
           parapertussis 12822]
 gi|33564808|emb|CAE39750.1| transcription antitermination protein NusG [Bordetella
           parapertussis]
          Length = 177

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/176 (48%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+ L      I +PSE VV V+ G+K  +ERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I+NQ+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREVEKILNQMEEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V +GP A FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176


>gi|268592956|ref|ZP_06127177.1| transcription termination/antitermination factor NusG [Providencia
           rettgeri DSM 1131]
 gi|291311427|gb|EFE51880.1| transcription termination/antitermination factor NusG [Providencia
           rettgeri DSM 1131]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFEGRVAQSLREHIKLHAMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|111220530|ref|YP_711324.1| transcription antitermination protein nusG [Frankia alni ACN14a]
 gi|111148062|emb|CAJ59729.1| Transcription antitermination protein nusG [Frankia alni ACN14a]
          Length = 291

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 2/174 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+S   ++  + +I +P+E V  V+ G++   +++ +PGY
Sbjct: 118 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122
           + ++  +TD+ +  +++TP V GF+G    PSP+   E+  I+       ++        
Sbjct: 178 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPAAPKEKKVETVRVQE 237

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVGE V V DGPFA+    +  ++ +  R+ V V IFGR TPVEL +NQV KI
Sbjct: 238 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 291


>gi|209520977|ref|ZP_03269713.1| NusG antitermination factor [Burkholderia sp. H160]
 gi|209498579|gb|EDZ98698.1| NusG antitermination factor [Burkholderia sp. H160]
          Length = 185

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+ +   +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQNQFGQILVPTEEVVEVKGGHKSVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185


>gi|94971707|ref|YP_593755.1| transcription antitermination protein nusG [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553757|gb|ABF43681.1| transcription antitermination protein nusG [Candidatus Koribacter
           versatilis Ellin345]
          Length = 199

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 118/175 (67%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYI+  YS  E+K  ES+  R+   GL+  +  + IP+E V  VR G+K  SER F+P
Sbjct: 24  MKWYIIHSYSGFERKVKESLESRIHAFGLEGKIGRVLIPTESVTEVRGGKKYTSERMFYP 83

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  M D V+H +K TP+V GF+GTG+ P+P+++ E++ I+ +V  + ++P   V 
Sbjct: 84  GYVLVEMDMDDNVWHVVKSTPRVTGFVGTGQQPTPLSEEEVQQIVYRVADSREKPKLKVK 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +E  E V +S+GPFA+F G+V  V+E+K  + V V IFGR TPVEL + QVEK++
Sbjct: 144 YEKNETVRISEGPFATFQGVVDEVNEDKETLKVMVTIFGRSTPVELEFGQVEKVL 198


>gi|330815227|ref|YP_004358932.1| Transcription antitermination protein NusG [Burkholderia gladioli
           BSR3]
 gi|327367620|gb|AEA58976.1| Transcription antitermination protein NusG [Burkholderia gladioli
           BSR3]
          Length = 185

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV VR G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185


>gi|157368521|ref|YP_001476510.1| transcription antitermination protein NusG [Serratia proteamaculans
           568]
 gi|157320285|gb|ABV39382.1| NusG antitermination factor [Serratia proteamaculans 568]
          Length = 181

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREYIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180


>gi|325982737|ref|YP_004295139.1| NusG antitermination factor [Nitrosomonas sp. AL212]
 gi|325532256|gb|ADZ26977.1| NusG antitermination factor [Nitrosomonas sp. AL212]
          Length = 177

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+V  YS  EK    ++  R+ R+G+     +I +P E V+ ++ G+K  SER+F
Sbjct: 1   MSMKWYVVHAYSGYEKSVQRALRDRIDRAGMQDKFGQILVPVEEVIEMKSGQKNISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M+D  +H +K+  KV GF+G     P+P++  E+++I++Q++  V++P  
Sbjct: 61  FPGYVLVEMEMSDDTWHLVKNIDKVTGFVGGSAMKPTPISQKEVDNILHQIQEGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FE+GE + V DGPF  F+G V++V+ +KS++ V V IFGR TPVEL +NQVEK
Sbjct: 121 KILFEIGEAIRVKDGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFNQVEK 176


>gi|312882839|ref|ZP_07742572.1| transcription antitermination protein NusG [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309369531|gb|EFP97050.1| transcription antitermination protein NusG [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 182

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEESFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|294668287|ref|ZP_06733391.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309741|gb|EFE50984.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 177

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK   +++  R+ R G+     +I +P+E VV ++ GR+  SER+F
Sbjct: 1   MSKKWYVVQAYSGFEKNVQKALKDRIEREGMGTSFGKILVPTEEVVDIKNGRRTVSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M+D  +H ++ TP+V GF+G     P P++  E++ I+ Q++    +P  
Sbjct: 61  FPGYVLVEMEMSDDSWHLVRSTPRVSGFVGGEANRPLPISQREVDSILAQIQIGGDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVG++V V++GPFA FNGIV  V+ E+S++ V V IFGR TPVEL + QVEK
Sbjct: 121 RVEFEVGQQVRVTEGPFADFNGIVSEVNYERSKLRVSVQIFGRETPVELDFGQVEK 176


>gi|329296854|ref|ZP_08254190.1| transcription antitermination protein NusG [Plautia stali symbiont]
          Length = 181

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEARVAKSLQEHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180


>gi|257095052|ref|YP_003168693.1| transcription antitermination protein NusG [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047576|gb|ACV36764.1| NusG antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 177

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK    ++  R+ R G++     I +P E VV ++ G+K  SER+F
Sbjct: 1   MSMRWYVVHAYSGFEKSVQRALLERIQRQGMEESFGRILVPVEEVVELKMGQKSISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D  +H +K TPKV GF+G     PSP+++ E+  IM Q++  V +P  
Sbjct: 61  FPGYVLVEMEMNDDSWHLVKSTPKVTGFVGGTANKPSPISEKEVAKIMQQMQEGVDKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE GE V V DGPF  F+G V+ V+ EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEVVRVKDGPFTDFHGAVEQVNYEKNRLRVSVTIFGRPTPVELEFAQVEK 176


>gi|167587784|ref|ZP_02380172.1| NusG antitermination factor [Burkholderia ubonensis Bu]
 gi|254253528|ref|ZP_04946846.1| transcription antitermination protein NusG [Burkholderia dolosa
           AUO158]
 gi|124896137|gb|EAY70017.1| transcription antitermination protein NusG [Burkholderia dolosa
           AUO158]
 gi|325529724|gb|EGD06581.1| transcription antitermination protein NusG [Burkholderia sp. TJI49]
          Length = 185

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     P+P++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185


>gi|78064911|ref|YP_367680.1| transcription antitermination protein NusG [Burkholderia sp. 383]
 gi|107024316|ref|YP_622643.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia AU 1054]
 gi|115350309|ref|YP_772148.1| transcription antitermination protein NusG [Burkholderia ambifaria
           AMMD]
 gi|116688359|ref|YP_833982.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia HI2424]
 gi|134294430|ref|YP_001118165.1| transcription antitermination protein NusG [Burkholderia
           vietnamiensis G4]
 gi|161523416|ref|YP_001578428.1| transcription antitermination protein NusG [Burkholderia
           multivorans ATCC 17616]
 gi|170701415|ref|ZP_02892373.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|170731669|ref|YP_001763616.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia MC0-3]
 gi|171319353|ref|ZP_02908463.1| NusG antitermination factor [Burkholderia ambifaria MEX-5]
 gi|172059328|ref|YP_001806980.1| transcription antitermination protein NusG [Burkholderia ambifaria
           MC40-6]
 gi|189351811|ref|YP_001947439.1| transcription antitermination protein NusG [Burkholderia
           multivorans ATCC 17616]
 gi|206558628|ref|YP_002229388.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia J2315]
 gi|221201552|ref|ZP_03574590.1| transcription termination/antitermination factor NusG [Burkholderia
           multivorans CGD2M]
 gi|221207373|ref|ZP_03580383.1| transcription termination/antitermination factor NusG [Burkholderia
           multivorans CGD2]
 gi|221213511|ref|ZP_03586486.1| transcription termination/antitermination factor NusG [Burkholderia
           multivorans CGD1]
 gi|254246607|ref|ZP_04939928.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia PC184]
 gi|77965656|gb|ABB07036.1| transcription antitermination protein nusG [Burkholderia sp. 383]
 gi|105894505|gb|ABF77670.1| transcription antitermination protein nusG [Burkholderia
           cenocepacia AU 1054]
 gi|115280297|gb|ABI85814.1| transcription antitermination protein nusG [Burkholderia ambifaria
           AMMD]
 gi|116646448|gb|ABK07089.1| transcription antitermination protein nusG [Burkholderia
           cenocepacia HI2424]
 gi|124871383|gb|EAY63099.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia PC184]
 gi|134137587|gb|ABO53330.1| transcription antitermination protein nusG [Burkholderia
           vietnamiensis G4]
 gi|160340845|gb|ABX13931.1| NusG antitermination factor [Burkholderia multivorans ATCC 17616]
 gi|169814911|gb|ACA89494.1| NusG antitermination factor [Burkholderia cenocepacia MC0-3]
 gi|170133667|gb|EDT02037.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171095424|gb|EDT40396.1| NusG antitermination factor [Burkholderia ambifaria MEX-5]
 gi|171991845|gb|ACB62764.1| NusG antitermination factor [Burkholderia ambifaria MC40-6]
 gi|189335833|dbj|BAG44903.1| transcriptional antiterminator [Burkholderia multivorans ATCC
           17616]
 gi|198034665|emb|CAR50532.1| transcription antitermination protein NusG [Burkholderia
           cenocepacia J2315]
 gi|221166963|gb|EED99434.1| transcription termination/antitermination factor NusG [Burkholderia
           multivorans CGD1]
 gi|221172961|gb|EEE05398.1| transcription termination/antitermination factor NusG [Burkholderia
           multivorans CGD2]
 gi|221178368|gb|EEE10777.1| transcription termination/antitermination factor NusG [Burkholderia
           multivorans CGD2M]
          Length = 185

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     P+P++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRSTPVELEFGQVEKV 185


>gi|312795756|ref|YP_004028678.1| transcription antitermination protein nusG [Burkholderia
           rhizoxinica HKI 454]
 gi|312167531|emb|CBW74534.1| Transcription antitermination protein nusG [Burkholderia
           rhizoxinica HKI 454]
          Length = 185

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV ++ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHKSVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E++ IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185


>gi|308188903|ref|YP_003933034.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
 gi|308059413|gb|ADO11585.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
          Length = 181

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180


>gi|315125336|ref|YP_004067339.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913]
 gi|315013849|gb|ADT67187.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913]
          Length = 185

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/172 (44%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  EK+  +++   +   GL+    E+ +P+E VV +R G+K  SER+FFPG
Sbjct: 11  RWYVVQAFSGYEKRVAQTLLEHIKIKGLEDSFGEVLVPTEEVVEMRAGQKRKSERKFFPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++  M D  +H +  T +V+GF+G   + P+P++  E + I+N+++   + P  +  
Sbjct: 71  YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182


>gi|261866778|ref|YP_003254700.1| transcription termination/antitermination factor NusG
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391591|ref|ZP_06635925.1| transcription termination/antitermination factor NusG
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412110|gb|ACX81481.1| transcription termination/antitermination factor NusG
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952125|gb|EFE02244.1| transcription termination/antitermination factor NusG
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 183

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER++FP
Sbjct: 8   KRWYVLQAFSGFEARVATTLREYIKLHNMEDQFGEVLVPTEEVVENVAGKRRKSERKYFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H ++  P+V+GF+G   + P+P++  E + I+N++E +  +P    
Sbjct: 68  GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISSREADIILNRLEQSNDKPKPRT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPF  FNG V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 128 TFQPGEEVRVTEGPFIDFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 181


>gi|297172380|gb|ADI23355.1| transcription antiterminator [uncultured Oceanospirillales
           bacterium HF0770_27O18]
 gi|297181153|gb|ADI17350.1| transcription antiterminator [uncultured Oceanospirillales
           bacterium HF0070_21F08]
          Length = 180

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 118/179 (65%), Gaps = 4/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK    S+  R+  + ++ L  EI +P+E VV +R G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKHVKRSLEERIKLNSMEELFGEILVPTEEVVEMRAGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAAVQR 116
           FPGYVL+   M D  +H +K+TPKV+GF+G         SP+T  E + I+ +++ AV++
Sbjct: 61  FPGYVLVHMEMNDDSWHMVKETPKVMGFIGEDPKNPGRVSPITQKEADAILRRMDDAVEK 120

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           P     FE GE V V+DGPFA FNG+V+ V+ EKSR+HV V+IFGR TPVEL + QVEK
Sbjct: 121 PKPKTLFEAGEVVRVTDGPFADFNGVVEEVNYEKSRLHVAVLIFGRSTPVELEFGQVEK 179


>gi|256380624|ref|YP_003104284.1| NusG antitermination factor [Actinosynnema mirum DSM 43827]
 gi|255924927|gb|ACU40438.1| NusG antitermination factor [Actinosynnema mirum DSM 43827]
          Length = 266

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    ++  + ++ +P+E V  ++ G++   +R+  PGY
Sbjct: 84  WYVVHSYAGYENKVKTNLETRIQTLDMEDYIFQVEVPTEEVTEIKNGQRKQVQRKVLPGY 143

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113
           +L++  + D  +  +++TP V GF+G    PSP+T  E+   +            +    
Sbjct: 144 ILVRMELNDGSWSAVRNTPGVTGFVGATSKPSPLTVDEVLKFLLPQGKQEPAAGKKAATT 203

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +    V FEVGE V V DGPFA+    +  V+ +  ++ V V IFGR TPVEL+++QV
Sbjct: 204 PVKSTVEVDFEVGESVTVMDGPFATLPATISEVNADGQKLKVLVSIFGRETPVELSFSQV 263

Query: 174 EKI 176
            KI
Sbjct: 264 SKI 266


>gi|78221834|ref|YP_383581.1| transcription antitermination protein nusG [Geobacter
           metallireducens GS-15]
 gi|78193089|gb|ABB30856.1| transcription antitermination protein nusG [Geobacter
           metallireducens GS-15]
          Length = 175

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY V  YS  E K   S+  R+   GL+    EI IPSE VV ++KG K  S R+F
Sbjct: 1   MAKKWYGVHTYSGFENKVRLSLSERIKNLGLEESFGEILIPSETVVELKKGEKKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   ++D+ +H +K+T KV GF+G G NP  + D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVNMELSDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F G+V++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VQFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174


>gi|291613224|ref|YP_003523381.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1]
 gi|291583336|gb|ADE10994.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1]
          Length = 177

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK    ++  R++R G++ L  +I +P E VV ++ G+K  SER+F
Sbjct: 1   MAKRWYVVHTYSQFEKSVQRALLERIAREGMEDLFGQILVPVEEVVELKSGQKNISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MTD+ +H +K+TPKV GFLG     P+P++  E+++IM Q++A V++P  
Sbjct: 61  FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMKPTPISQKEVDNIMQQMQAGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V +GPF  F+G+V++V+ +KS++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEAVRVKEGPFTDFHGMVEDVNYDKSKLRVAVTIFGRSTPVELNFGQVEK 176


>gi|146309859|ref|YP_001174933.1| transcription antitermination protein NusG [Enterobacter sp. 638]
 gi|145316735|gb|ABP58882.1| transcription antitermination protein nusG [Enterobacter sp. 638]
          Length = 181

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFAQVEK 180


>gi|82701887|ref|YP_411453.1| transcription antitermination protein NusG [Nitrosospira
           multiformis ATCC 25196]
 gi|82409952|gb|ABB74061.1| transcription antitermination protein nusG [Nitrosospira
           multiformis ATCC 25196]
          Length = 177

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  EK    ++  R+SR+G+     +I +P E V+ ++ G+K  SER+F
Sbjct: 1   MEKKWYVVHAYSGFEKSVQRALKERISRAGMLDKFGQILVPVEEVIEMKAGQKNLSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MTD+ +H +K+TPKV GF+G    NP+P+++ E+++I++Q++  V++P  
Sbjct: 61  FPGYVLVEMEMTDETWHLVKNTPKVTGFIGGTAMNPTPISEKEVQNILHQIQEGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FE GE V V +GPF  F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFETGEAVRVKEGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFSQVEK 176


>gi|114778898|ref|ZP_01453695.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1]
 gi|114550867|gb|EAU53433.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1]
          Length = 176

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 118/175 (67%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQVYSN E K    +     R+GL     +I +P E VV +++G+KV S+R+F
Sbjct: 1   MAMRWYVVQVYSNFEDKVEHMLRENAERAGLADKFGQILVPREEVVELKEGQKVTSQRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L++  M D  +H +KDT +V GFLG   NP P+   E++ ++ Q+E  ++RP   
Sbjct: 61  FPGYILVEMDMNDDTWHVVKDTRQVSGFLGADNNPKPMPQREVDALIRQIEEGIERPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V F++GE V V DGPFASFNG+V+ V E+K+++ V V IFGR TPVEL Y QVEK
Sbjct: 121 VMFDIGEAVRVIDGPFASFNGVVEEVMEDKAKLKVSVSIFGRPTPVELDYIQVEK 175


>gi|315635152|ref|ZP_07890430.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
 gi|315476114|gb|EFU66868.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
          Length = 183

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER++FP
Sbjct: 8   KRWYVLQAFSGFEARVATTLREYIKLHNMEEQFGEVLVPTEEVVENVAGKRRKSERKYFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H ++  P+V+GF+G   + P+P+++ E + I+N++E    +P    
Sbjct: 68  GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPF  FNG V+ +D EK R+ V V IFGR TPVEL + QVEK
Sbjct: 128 TFQPGEEVRVTEGPFMDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181


>gi|50119178|ref|YP_048345.1| transcription antitermination protein NusG [Pectobacterium
           atrosepticum SCRI1043]
 gi|227115002|ref|ZP_03828658.1| transcription antitermination protein NusG [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227328359|ref|ZP_03832383.1| transcription antitermination protein NusG [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|253686606|ref|YP_003015796.1| NusG antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|261819561|ref|YP_003257667.1| transcription antitermination protein NusG [Pectobacterium wasabiae
           WPP163]
 gi|49609704|emb|CAG73137.1| transcription antitermination protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|251753184|gb|ACT11260.1| NusG antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|261603574|gb|ACX86060.1| NusG antitermination factor [Pectobacterium wasabiae WPP163]
          Length = 181

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180


>gi|317494918|ref|ZP_07953328.1| transcription termination/antitermination factor NusG
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917106|gb|EFV38455.1| transcription termination/antitermination factor NusG
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 181

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180


>gi|288917215|ref|ZP_06411584.1| NusG antitermination factor [Frankia sp. EUN1f]
 gi|288351406|gb|EFC85614.1| NusG antitermination factor [Frankia sp. EUN1f]
          Length = 266

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+S   ++  + +I +P+E V  V+ G++    ++ +PGY
Sbjct: 93  WYVVHSYAGYENKVKANLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVLQKKYPGY 152

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--F 122
           + ++  +TD+ +  +++TP V GF+G    PSP+   E+  I+  V    ++  +     
Sbjct: 153 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVAILAPVAPKEKKVETVKAQE 212

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVGE V V DGPFA+    +  ++ +  R+ V V IFGR TPVEL +NQV KI
Sbjct: 213 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 266


>gi|256371203|ref|YP_003109027.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007787|gb|ACU53354.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
          Length = 243

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 4/175 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E +  +++  R+   GL+  + E+ IP E V  ++ GR+V  +R+ FPGY
Sbjct: 68  WYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPGY 127

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++A M D+V+  I++TP +  F+G+G  P P++  E+E + +       RP       
Sbjct: 128 VLVRAEMDDEVWSAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEELRPQPQRRST 187

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             FE+GE V V +GP A F G V  V+ ++ ++ V   IFGR TPVEL + QV K
Sbjct: 188 QEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSK 242


>gi|225076428|ref|ZP_03719627.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens
           NRL30031/H210]
 gi|241760434|ref|ZP_04758528.1| transcription termination/antitermination factor NusG [Neisseria
           flavescens SK114]
 gi|261381381|ref|ZP_05985954.1| transcription termination/antitermination factor NusG [Neisseria
           subflava NJ9703]
 gi|224952228|gb|EEG33437.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens
           NRL30031/H210]
 gi|241319103|gb|EER55596.1| transcription termination/antitermination factor NusG [Neisseria
           flavescens SK114]
 gi|284795628|gb|EFC50975.1| transcription termination/antitermination factor NusG [Neisseria
           subflava NJ9703]
          Length = 177

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+VQ YS  EK   +++  R++R  ++    +I +P E VV ++ GRK  SER+F
Sbjct: 1   MSKRWYVVQAYSGFEKNVQKTLKERIARENMEEYFGQILVPVEEVVDIKNGRKTISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G  G  P P++  + + I+ Q +  V++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNGIV  V+ E++R+ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177


>gi|148657431|ref|YP_001277636.1| NusG antitermination factor [Roseiflexus sp. RS-1]
 gi|148569541|gb|ABQ91686.1| transcription antitermination protein nusG [Roseiflexus sp. RS-1]
          Length = 194

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 106/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  +++  R+    +   +  + +P+E  + ++ G++   +++ FPG
Sbjct: 22  RWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFPG 81

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  M D  ++ +++TP V  F+G G  P+P+ +SE++ I+ Q+E   + P   V +
Sbjct: 82  YVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEESEVKAILRQMEQ--EAPKVKVSY 139

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +VG+ V ++DGPF  F G+V  +D E+ RV V V  FGR  PVEL + QV ++V
Sbjct: 140 QVGQAVKITDGPFTDFEGVVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193


>gi|295677945|ref|YP_003606469.1| NusG antitermination factor [Burkholderia sp. CCGE1002]
 gi|295437788|gb|ADG16958.1| NusG antitermination factor [Burkholderia sp. CCGE1002]
          Length = 185

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFP
Sbjct: 11  KRWYVVHAYSGMEKSVQRALQERIERAGMQEQFGQILVPTEEVVEVKGGHKSVTERRFFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P    
Sbjct: 71  GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185


>gi|126090327|ref|YP_001041770.1| NusG antitermination factor [Shewanella baltica OS155]
 gi|152998737|ref|YP_001364418.1| NusG antitermination factor [Shewanella baltica OS185]
 gi|160873314|ref|YP_001552630.1| NusG antitermination factor [Shewanella baltica OS195]
 gi|217975213|ref|YP_002359964.1| NusG antitermination factor [Shewanella baltica OS223]
 gi|304412753|ref|ZP_07394355.1| NusG antitermination factor [Shewanella baltica OS183]
 gi|307307417|ref|ZP_07587152.1| NusG antitermination factor [Shewanella baltica BA175]
 gi|125999947|gb|ABN64015.1| transcription antitermination protein nusG [Shewanella baltica
           OS155]
 gi|151363355|gb|ABS06355.1| NusG antitermination factor [Shewanella baltica OS185]
 gi|160858836|gb|ABX47370.1| NusG antitermination factor [Shewanella baltica OS195]
 gi|217500348|gb|ACK48541.1| NusG antitermination factor [Shewanella baltica OS223]
 gi|304348833|gb|EFM13249.1| NusG antitermination factor [Shewanella baltica OS183]
 gi|306910205|gb|EFN40638.1| NusG antitermination factor [Shewanella baltica BA175]
 gi|315265541|gb|ADT92394.1| NusG antitermination factor [Shewanella baltica OS678]
          Length = 183

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E V+ +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEEYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++D E + I+ +++     P    
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRT 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IFEPGELVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182


>gi|127511080|ref|YP_001092277.1| NusG antitermination factor [Shewanella loihica PV-4]
 gi|126636375|gb|ABO22018.1| transcription antitermination protein nusG [Shewanella loihica
           PV-4]
          Length = 180

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++H   E+ +P+E VV +R G++  SER+FFP
Sbjct: 6   KRWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKSERKFFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E + I+ +++   + P   V
Sbjct: 66  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAILQRLQETTESPTHRV 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 126 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 179


>gi|39997959|ref|NP_953910.1| transcription antitermination protein NusG [Geobacter
           sulfurreducens PCA]
 gi|39984904|gb|AAR36260.1| transcription antitermination protein NusG [Geobacter
           sulfurreducens PCA]
 gi|298506900|gb|ADI85623.1| transcription antitermination protein NusG [Geobacter
           sulfurreducens KN400]
          Length = 175

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  YS  E K   S+  R+   GL+    EI IPSE VV ++KG K  S R+F
Sbjct: 1   MSKKWYGVHTYSGFENKVRLSLQERVKNLGLEEFFGEILIPSETVVELKKGEKKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + D+ +H +K+T KV GF+G G NP  + D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVNMELNDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F G+V++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VEFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174


>gi|319778783|ref|YP_004129696.1| Transcription antitermination protein NusG [Taylorella
           equigenitalis MCE9]
 gi|317108807|gb|ADU91553.1| Transcription antitermination protein NusG [Taylorella
           equigenitalis MCE9]
          Length = 180

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V V+S  EKK   ++  R+ ++G+      I +P+E +V  R  ++  S+R+ 
Sbjct: 1   MSLRWYVVHVFSGMEKKVYAALQERIEQAGMQEYFGRILVPTEEIVETRGSKRSVSQRKI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV 118
           FPGY+L++       +H +K T +V GFLG G    PSP+   E++ ++  +E    +P 
Sbjct: 61  FPGYILVEMEFNPDTWHLVKSTNRVTGFLGGGSNSKPSPIPQKEVDSLLANLEEGGGKPR 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             V FEVGE + + DGPFA FNG+V  V+ EK+RV V V+IFGR TPVEL ++QVEK
Sbjct: 121 PKVLFEVGETLRIKDGPFADFNGVVDQVNYEKNRVTVIVMIFGRSTPVELDFSQVEK 177


>gi|152980025|ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp.
           Marseille]
 gi|151280102|gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille]
          Length = 199

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R +R+G++    +I +P+E V+ V+ G K  SERRFFP
Sbjct: 25  KRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSERRFFP 84

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     P+P+   E++ IM Q++  V++P   V
Sbjct: 85  GYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKPRPKV 144

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVGE V + DGPF  FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 145 LYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199


>gi|78043442|ref|YP_361133.1| transcription termination/antitermination factor NusG
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995557|gb|ABB14456.1| transcription termination/antitermination factor NusG
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 173

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+    + + +  I +P E  + ++ G+K  S+R+ 
Sbjct: 1   MEKNWYVVHTYSGHENKVKANLEKRIESLNMGNHIFRILVPMEDELEIKDGKKKVSKRKI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ ++TD+ Y+ ++ TP V GF+G G  P P+T  E+  IM Q+   +  P + 
Sbjct: 61  FPGYVLVEMILTDESYNVVRHTPGVTGFVG-GSKPIPLTAQEVRQIMKQMG--IDEPRTK 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  E+G+ V V+ GPF  F G V+ +  +K +V V V +FGR TP+EL ++QV KI
Sbjct: 118 IDLEIGQPVRVNAGPFEGFVGNVEEIYPDKGKVKVLVSMFGRETPIELDFSQVTKI 173


>gi|307823429|ref|ZP_07653658.1| NusG antitermination factor [Methylobacter tundripaludum SV96]
 gi|307735414|gb|EFO06262.1| NusG antitermination factor [Methylobacter tundripaludum SV96]
          Length = 177

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YSN E K  +++  R+ R GL+    +I +P+E VV +R G++  SER+F
Sbjct: 1   MALRWYVVHAYSNFENKVKQALEERIKREGLEQYFGKILVPTEEVVEMRMGQQRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +KD P+V+GF+G   + P+P+++ E   I+N+VE  V +P  
Sbjct: 61  FPGYVLVQMDLTDETWHLVKDVPRVLGFIGGTSDRPAPISEKEAMAILNRVEDGVNKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE + V DGPF  FNG+V+ V+ EKS++ + V+IFGR T VEL + QVEK
Sbjct: 121 KTMFEAGEVIRVIDGPFKDFNGVVEEVNYEKSKIKISVLIFGRSTSVELGFGQVEK 176


>gi|296315359|ref|ZP_06865300.1| transcription termination/antitermination factor NusG [Neisseria
           polysaccharea ATCC 43768]
 gi|296837688|gb|EFH21626.1| transcription termination/antitermination factor NusG [Neisseria
           polysaccharea ATCC 43768]
          Length = 178

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK    ++  R++R  +     +I +P E+VV +R GRK  SER+ 
Sbjct: 1   MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G     P+P++  E E I+ QV+  +++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177


>gi|253995706|ref|YP_003047770.1| NusG antitermination factor [Methylotenera mobilis JLW8]
 gi|253982385|gb|ACT47243.1| NusG antitermination factor [Methylotenera mobilis JLW8]
          Length = 178

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 1/178 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY VQ +S  EK   + +  R+ RSGL     +I +P E V+ ++ G+K  SER+ 
Sbjct: 1   MSMKWYAVQAFSGFEKSVQKGLEERVVRSGLQDQFGQILVPIEEVIEMKAGQKTISERKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V  F+G   + P+P+ D E++ I+ +++ +   P  
Sbjct: 61  YPGYVLVQMNMTDDTWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            + FE GE V ++DGPF  F+G V+ ++ EKS++ V VVIFGR TPVEL ++QVEK V
Sbjct: 121 KLTFEKGESVRITDGPFKDFSGNVEEINYEKSKLRVSVVIFGRSTPVELEFSQVEKEV 178


>gi|126209181|ref|YP_001054406.1| transcription antitermination protein NusG [Actinobacillus
           pleuropneumoniae L20]
 gi|165977153|ref|YP_001652746.1| transcription antitermination protein NusG [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|126097973|gb|ABN74801.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165877254|gb|ABY70302.1| transcription antitermination protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 176

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    GR+  +ER+FFP
Sbjct: 1   MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++  E + I+N+V+   ++P    
Sbjct: 61  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 121 EFQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 174


>gi|254693950|ref|ZP_05155778.1| transcription antitermination protein NusG [Brucella abortus bv. 3
           str. Tulya]
 gi|261214243|ref|ZP_05928524.1| transcription antitermination protein NusG [Brucella abortus bv. 3
           str. Tulya]
 gi|260915850|gb|EEX82711.1| transcription antitermination protein NusG [Brucella abortus bv. 3
           str. Tulya]
          Length = 175

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL  L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD V+  IK+TPKV GFLG    P+PV+  E++ I+NQV+  V+RP +S
Sbjct: 61  FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPAPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175


>gi|322834826|ref|YP_004214853.1| NusG antitermination factor [Rahnella sp. Y9602]
 gi|321170027|gb|ADW75726.1| NusG antitermination factor [Rahnella sp. Y9602]
          Length = 181

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G +  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180


>gi|310817023|ref|YP_003964987.1| transcription termination/antitermination factor NusG
           [Ketogulonicigenium vulgare Y25]
 gi|308755758|gb|ADO43687.1| transcription termination/antitermination factor NusG
           [Ketogulonicigenium vulgare Y25]
          Length = 177

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E+I  +++  GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAETIRTKVAEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+DK +H +    +V GFLG    P P+ D+E+  I+N+V+   + P   
Sbjct: 61  MPGYVLVHMEMSDKGFHLVSSINRVTGFLGPQGRPMPMRDAEVNAILNRVQDVAETPRIQ 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE+GE+V V+DGPF  F+G V+ VD +  R+ V V IFGR TPVEL + QV+K
Sbjct: 121 VRFEIGEKVKVNDGPFEGFDGTVEEVDGDAQRLKVTVSIFGRATPVELEFTQVQK 175


>gi|152998283|ref|YP_001343118.1| NusG antitermination factor [Marinomonas sp. MWYL1]
 gi|150839207|gb|ABR73183.1| NusG antitermination factor [Marinomonas sp. MWYL1]
          Length = 177

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWY+VQ YS  EK  + S+  R+   G +    +I +P+E VV +R G+K  SER+F
Sbjct: 1   MTKRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K T +V+GF+G   + PSP+T  E + I+ +V   V +P  
Sbjct: 61  YPGYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FEVGE V V++GPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 KTLFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176


>gi|119502910|ref|ZP_01624995.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080]
 gi|119461256|gb|EAW42346.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080]
          Length = 177

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  +S  EKK   ++  R+ R+ +     EI +P+E VV ++ G+K  SER+F
Sbjct: 1   MAMRWYVVHAFSQYEKKVAVALKERIERNSMQDYFGEIIVPTEEVVEMKGGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+T++E   I+ +VEA V +P  
Sbjct: 61  FPGYVLVQMELNDDSWHLVKETPRVLGFIGGKADKPAPITEAEASAILQRVEAGVDQPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176


>gi|293602653|ref|ZP_06685095.1| transcription antitermination protein NusG [Achromobacter
           piechaudii ATCC 43553]
 gi|292818963|gb|EFF78002.1| transcription antitermination protein NusG [Achromobacter
           piechaudii ATCC 43553]
          Length = 177

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V VYS  EK   +++  R+ R+ L      I +PSE VV V+ G+K  +ERR 
Sbjct: 1   MSKRWYVVHVYSGMEKSVHKALVERIERAALQTSFGRILVPSEEVVEVKGGQKSITERRI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  +TD+ +H +K+T +V GFLG  G  P+P+++ E+E I++Q+E  V++P  
Sbjct: 61  FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK
Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176


>gi|313667421|ref|YP_004047705.1| transcription antitermination protein [Neisseria lactamica ST-640]
 gi|313004883|emb|CBN86309.1| transcription antitermination protein [Neisseria lactamica 020-06]
          Length = 178

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/177 (44%), Positives = 118/177 (66%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK    ++  R++R  +     +I +P E+VV +R GRK  SER+ 
Sbjct: 1   MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  ++ +K TP+V GF+G     P P++  E E I+ QV+A  ++P  
Sbjct: 61  YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQAGAEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG+++ V++GPFA FNG+V  V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177


>gi|34499653|ref|NP_903868.1| transcription antitermination protein NusG [Chromobacterium
           violaceum ATCC 12472]
 gi|34105503|gb|AAQ61858.1| transcription antitermination protein NusG [Chromobacterium
           violaceum ATCC 12472]
          Length = 177

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK   +++  R+ RS +     +I +P E VV V+ GRK  +ER+F
Sbjct: 1   MAKRWYVVHAYSGFEKSVQKALRERIERSDIADQFGQILVPVEEVVDVKNGRKSITERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MTD  +H +K TPKV GF+G     P+P++  E+E IM Q++  V++P  
Sbjct: 61  FPGYVLVEMEMTDDTWHLVKSTPKVTGFVGGTANRPAPISKKEVEAIMQQMQEGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVGE+V V DGPF  FNG V  V+ E++++ V V IFGR TPVEL ++QVEK+
Sbjct: 121 KVLFEVGEKVRVIDGPFNDFNGSVDEVNYERNKLRVSVQIFGRDTPVELEFSQVEKL 177


>gi|193222431|emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas
           arsenicoxydans]
          Length = 192

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK  + ++  R++R+G+     +I +P+E V+ V+ G+K  SERRFFP
Sbjct: 18  KRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     P+P+   E++ IM Q++  V++P   V
Sbjct: 78  GYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKV 137

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVGE V + DGPF  FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 138 LYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192


>gi|138893771|ref|YP_001124224.1| transcription antitermination protein NusG [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265284|gb|ABO65479.1| Transcription antitermination factor [Geobacillus
           thermodenitrificans NG80-2]
          Length = 177

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G++  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+ + EI+ I+ ++   +   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEIKLILKRMGMPLAEV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177


>gi|237747354|ref|ZP_04577834.1| transcription antiterminator [Oxalobacter formigenes HOxBLS]
 gi|229378705|gb|EEO28796.1| transcription antiterminator [Oxalobacter formigenes HOxBLS]
          Length = 195

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V VYS  EK    S+  R+ R G+     +I +P+E VV V+ G+K  +ERRFFP
Sbjct: 21  MRWYVVHVYSGMEKSVRRSLLERIDRMGMADKFGQILVPTEEVVEVKSGQKSVTERRFFP 80

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  MTD  +H +KDT KV GF+G     P+PV   E++ ++ Q++  V +P   +
Sbjct: 81  GYVLIEMEMTDDTWHLVKDTGKVTGFVGGKSNKPTPVPAREMDKLLQQMQEGVDKPRPKI 140

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 SYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195


>gi|307543813|ref|YP_003896292.1| transcription antitermination protein NusG [Halomonas elongata DSM
           2581]
 gi|307215837|emb|CBV41107.1| transcription antitermination protein NusG [Halomonas elongata DSM
           2581]
          Length = 177

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK  + S+  R+   G++    EI +P+E VV VR G++  SER+F
Sbjct: 1   MSKRWYVVHAYSGFEKHVMRSLTERVKLYGMEDRFGEILVPTEEVVEVRDGKRRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H + +TP+V+GF+G   E P+P+T  E + I+++V+   ++P  
Sbjct: 61  YPGYVLVEMEMADDTWHLVNETPRVMGFIGGTKEKPAPITQREADAILSRVKDGTEQPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE G+ V V DGPFA FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 KTMFEPGQSVRVIDGPFADFNGVVEEVNYDKSRLQVSVLIFGRSTPVELEFAQVEK 176


>gi|257791876|ref|YP_003182482.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|317489879|ref|ZP_07948372.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. 1_3_56FAA]
 gi|325829776|ref|ZP_08163234.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
 gi|257475773|gb|ACV56093.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|316911034|gb|EFV32650.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. 1_3_56FAA]
 gi|325487943|gb|EGC90380.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
          Length = 176

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M  +WY++  YS  E K  +++  R+   GL++ V  I IP+E V  +++G R+V SE++
Sbjct: 1   MAKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFGIEIPTEMVTEIKEGGRRVESEKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  + D+ +  +++TP V GF+G   NP+P+T  E   IM +      +  S
Sbjct: 61  VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGADGNPAPLTRDEYNKIMKRTSREAPKKTS 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S   EVG+ V V  GP A F+G+V  V  +  +V V V IFGR TPVEL+++QV KI
Sbjct: 121 S-SLEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVMVSIFGRETPVELSFDQVAKI 176


>gi|308047968|ref|YP_003911534.1| transcription antitermination protein nusG [Ferrimonas balearica
           DSM 9799]
 gi|307630158|gb|ADN74460.1| transcription antitermination protein nusG [Ferrimonas balearica
           DSM 9799]
          Length = 181

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   MRWYVVQAFSGFEARVAQSLKEHIQMHGMEEFFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H +++ P+V+GF+G   + P+P+T+ E   I+N+++ A + P    
Sbjct: 67  GYVLVQMVMNDQSWHLVRNVPRVMGFIGGTSDRPAPITEKEANAILNRLQEATESPRHRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 127 IFEPGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVMIFGRSTPVELDFGQVEK 180


>gi|261378971|ref|ZP_05983544.1| transcription termination/antitermination factor NusG [Neisseria
           cinerea ATCC 14685]
 gi|269144586|gb|EEZ71004.1| transcription termination/antitermination factor NusG [Neisseria
           cinerea ATCC 14685]
          Length = 178

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/177 (43%), Positives = 116/177 (65%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+VQ YS  EK    ++  R++R  +     +I +P E+VV +R GRK  SER+ 
Sbjct: 1   MAKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  ++ +K TP+V GF+G     P P++  E E I+ QV+   ++P  
Sbjct: 61  YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + FEVG+++ V++GPFA FNG+V  V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KIEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177


>gi|145297373|ref|YP_001140214.1| transcription termination/antitermination factor NusG [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850145|gb|ABO88466.1| transcription termination/antitermination factor NusG [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 183

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++ +  E+ +P+E VV +R G+K  SER+FFP
Sbjct: 9   MRWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M +  +H +++ P+V+GF+G   + P+P++D E + I+N+++ A  +P    
Sbjct: 69  GYVLVQMLMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKT 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 129 LFEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182


>gi|117619084|ref|YP_858461.1| transcription termination/antitermination factor NusG [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|330831432|ref|YP_004394384.1| transcription termination/antitermination factor NusG [Aeromonas
           veronii B565]
 gi|117560491|gb|ABK37439.1| transcription termination/antitermination factor NusG [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|328806568|gb|AEB51767.1| transcription termination/antitermination factor NusG [Aeromonas
           veronii B565]
          Length = 183

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++ +  E+ +P+E VV +R G+K  SER+FFP
Sbjct: 9   MRWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M +  +H +++ P+V+GF+G   + P+P++D E + I+N+++ A  +P    
Sbjct: 69  GYVLVQMIMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKT 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 129 LFEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182


>gi|72163058|ref|YP_290715.1| transcription antitermination protein NusG [Thermobifida fusca YX]
 gi|71916790|gb|AAZ56692.1| transcription antitermination protein nusG [Thermobifida fusca YX]
          Length = 250

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E +   ++  R     ++  + ++ +P++ V  V+ G++     +  PGY
Sbjct: 72  WYVVHTYAGYENRVKANLENRTQSLNMEDYIFQVEVPTQEVTEVKSGKRQQVTEKVLPGY 131

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-------AVQRP 117
           VL++  +TD+ +  ++ TP V GF+G    P P++  E+  ++                P
Sbjct: 132 VLVRMELTDESWAAVRHTPGVTGFVGLSNRPVPLSLDEVAELLAPEPETEEEQAKKEAEP 191

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +E+GE V V DGPFA+    V  V+ +  ++ V V IFGR TPVEL +NQV KI
Sbjct: 192 RGEVEYEIGESVTVMDGPFATLPATVSEVNPDTQKLKVLVSIFGRETPVELGFNQVSKI 250


>gi|251793503|ref|YP_003008232.1| transcription termination/antitermination factor NusG
           [Aggregatibacter aphrophilus NJ8700]
 gi|247534899|gb|ACS98145.1| transcription termination/antitermination factor NusG
           [Aggregatibacter aphrophilus NJ8700]
          Length = 183

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER++FP
Sbjct: 8   KRWYVLQAFSGFEARVATTLREYIKLHQMEEQFGEVLVPTEEVVENVAGKRRKSERKYFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H ++  P+V+GF+G   + P+P+++ E + I+N++E    +P    
Sbjct: 68  GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPF  FNG V+ +D EK R+ V V IFGR TPVEL + QVEK
Sbjct: 128 TFQPGEEVRVTEGPFIDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181


>gi|32034812|ref|ZP_00134924.1| COG0250: Transcription antiterminator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151046|ref|YP_001969571.1| transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249959|ref|ZP_07336161.1| transcription antitermination protein NusG [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253131|ref|ZP_07339280.1| transcription antitermination protein NusG [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246643|ref|ZP_07528714.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248770|ref|ZP_07530783.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307253389|ref|ZP_07535260.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255628|ref|ZP_07537433.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257804|ref|ZP_07539561.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260079|ref|ZP_07541791.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262208|ref|ZP_07543858.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264409|ref|ZP_07545995.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189916177|gb|ACE62429.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647813|gb|EFL78020.1| transcription antitermination protein NusG [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651022|gb|EFL81176.1| transcription antitermination protein NusG [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852515|gb|EFM84749.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854697|gb|EFM86887.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859068|gb|EFM91110.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861477|gb|EFM93466.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306863710|gb|EFM95636.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865915|gb|EFM97791.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868082|gb|EFM99908.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870225|gb|EFN01983.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 187

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    GR+  +ER+FFP
Sbjct: 12  MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 71

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++  E + I+N+V+   ++P    
Sbjct: 72  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 131

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EFQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185


>gi|144900868|emb|CAM77732.1| transcription antitermination protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 177

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/175 (56%), Positives = 126/175 (72%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY+V VYS  EKK  +SI  +  + G+  +  +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3   TARWYVVHVYSGFEKKVSQSIREQAEQKGMAEMFEQILVPTEEVVEVRRGTKVNAERKFF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K  +TD  +H +K+TPKV GFLG    P P+T+ E E IM QV+  V+RP  SV
Sbjct: 63  PGYVLVKMELTDDSWHLVKNTPKVTGFLGGKGRPVPITEREAERIMQQVQEGVERPKPSV 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V V DGPF SFNG+V+ VDEE++R+ V V IFGR TPVEL Y QVEK+
Sbjct: 123 VFEVGEQVRVCDGPFTSFNGMVEEVDEERARLKVAVSIFGRSTPVELEYAQVEKV 177


>gi|117918645|ref|YP_867837.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
 gi|117610977|gb|ABK46431.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
          Length = 183

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E V+ +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++D E + I+ +++     P   V
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK
Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182


>gi|258513627|ref|YP_003189849.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
 gi|257777332|gb|ACV61226.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
          Length = 175

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K   ++  R+    ++  +  I +P E  V ++ G+K  S+++ 
Sbjct: 1   MDKQWYVVHTYSGYENKVKANLEKRIESMNMEDKIFRILVPMEDEVEIKNGKKKISKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ +MTD  ++ +++TP V GF+G+G  P P+ D+E   I+ Q+   ++ P + 
Sbjct: 61  FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSKPIPLNDAEAAQIIKQMG--LEEPRAR 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +  GE + V  GPF  F G ++ +  +K +V V + +FGR TPVEL + Q+ ++
Sbjct: 119 YDYNTGEIIRVISGPFEGFEGHIEELLLDKEKVRVMISMFGRETPVELDFTQIARL 174


>gi|78484628|ref|YP_390553.1| NusG antitermination factor [Thiomicrospira crunogena XCL-2]
 gi|78362914|gb|ABB40879.1| transcription antitermination protein nusG [Thiomicrospira
           crunogena XCL-2]
          Length = 177

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E K  + +   + R+GL     +I +PSE VV +R+G+K  SER+F
Sbjct: 1   MAQRWYVVHAYSGYENKVKKGLSEYIERAGLQDSFGQILVPSEEVVEIREGKKRTSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M +  +H +K  P+V+GF+G   + P+P++  E++ I+ +VE  V +P  
Sbjct: 61  FPGYVLVQMEMNEDTWHLVKSVPQVMGFIGGTSDRPAPISQKEVDRILQKVEEGVDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V +E GE V V DGPF  F  +V+ VD +K+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVIYEPGEMVRVIDGPFNDFEAVVEGVDYDKNKLQVSVLIFGRSTPVELEFTQVEK 176


>gi|223041760|ref|ZP_03611953.1| transcription antitermination protein NusG [Actinobacillus minor
           202]
 gi|240948037|ref|ZP_04752454.1| transcription antitermination protein NusG [Actinobacillus minor
           NM305]
 gi|223017444|gb|EEF15862.1| transcription antitermination protein NusG [Actinobacillus minor
           202]
 gi|240297653|gb|EER48130.1| transcription antitermination protein NusG [Actinobacillus minor
           NM305]
          Length = 186

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 106/174 (60%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E ++    G++  +ER+FFP
Sbjct: 10  KRWYVLQAFSGFENRVAVTLREYIKLHHMEEQFGEVLVPTEEIIENVGGKRRKTERKFFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +  ++  P+V+GF+G   + P+P++  E + I+N+V+    +P    
Sbjct: 70  GYVLVEMEMNDYTWQLVRSVPRVMGFIGGTADKPAPISKKEADRILNRVQETADKPRHRN 129

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +  GE V V++GPFA F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 130 EYFPGESVRVTEGPFADFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 183


>gi|49475393|ref|YP_033434.1| transcription antitermination protein NusG [Bartonella henselae
           str. Houston-1]
 gi|49238199|emb|CAF27409.1| Transcription antitermination protein [Bartonella henselae str.
           Houston-1]
          Length = 176

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 105/176 (59%), Positives = 137/176 (77%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERV+ VR+GRKV++ER+F
Sbjct: 1   MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVIEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+ A +TD+VYH IK+TPKV GFLG+   P P++D E E I+ QV+  V+ P +S
Sbjct: 61  FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPVPISDREAEQILKQVQERVESPKAS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L +NQVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFNQVEKL 176


>gi|297569434|ref|YP_003690778.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2]
 gi|296925349|gb|ADH86159.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2]
          Length = 176

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 112/176 (63%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E++   ++  R+  +G + +  EI +P+E+VV + KG +  S R+F
Sbjct: 1   MARRWYILHTYSGFEEQVKTALQERIKNAGQEEMFGEILVPTEQVVEMVKGARKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + ++ +HT++ TPKV GF+G   NP P+ D +   I+ +++    +P   
Sbjct: 61  FPGYILVNVDLNEETWHTVRGTPKVTGFIGNDLNPEPLADEDAMKIIGRIQDGALKPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE G++V V DGPFA+F G+V  V+ EK RV V V IFGR TPVEL + QV KI
Sbjct: 121 VSFEEGDQVRVVDGPFANFQGVVDEVNPEKGRVRVRVSIFGRETPVELEFIQVSKI 176


>gi|197117311|ref|YP_002137738.1| transcription termination/antitermination factor NusG [Geobacter
           bemidjiensis Bem]
 gi|253701934|ref|YP_003023123.1| NusG antitermination factor [Geobacter sp. M21]
 gi|197086671|gb|ACH37942.1| transcription termination/antitermination factor NusG [Geobacter
           bemidjiensis Bem]
 gi|251776784|gb|ACT19365.1| NusG antitermination factor [Geobacter sp. M21]
          Length = 175

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY V  YS  E K   S+  R+    ++    EI IP E VV ++KG K  S R+F
Sbjct: 1   MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + D  +H +K+T KV GF+G G NP P+ D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDDEVAKITKRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F+G+V++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174


>gi|24371817|ref|NP_715859.1| transcription antitermination protein NusG [Shewanella oneidensis
           MR-1]
 gi|113968532|ref|YP_732325.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
 gi|114045695|ref|YP_736245.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
 gi|24345622|gb|AAN53304.1|AE015471_9 transcription antitermination protein NusG [Shewanella oneidensis
           MR-1]
 gi|113883216|gb|ABI37268.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
 gi|113887137|gb|ABI41188.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
          Length = 183

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E V+ +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++D E + I+ +++     P   V
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182


>gi|295401934|ref|ZP_06811897.1| NusG antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109247|ref|YP_003987563.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1]
 gi|294976064|gb|EFG51679.1| NusG antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214348|gb|ADP72952.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1]
          Length = 177

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  R+   G+   +  I +P E     + G+K  ++R+ 
Sbjct: 1   MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETETKSGKKKAAKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+ + E+E I+ ++   +   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRMGMQLAE- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE  ++Q+EKI
Sbjct: 120 -LDVDYELKETVRVKEGPFANFTGTIEEIDVDKRKVKVLVNMFGRETPVEFEFSQIEKI 177


>gi|196251119|ref|ZP_03149798.1| NusG antitermination factor [Geobacillus sp. G11MC16]
 gi|196209360|gb|EDY04140.1| NusG antitermination factor [Geobacillus sp. G11MC16]
          Length = 177

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G++  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+ + E++ I+ ++   +   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKLILKRMGMPLAEV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177


>gi|16802292|ref|NP_463777.1| transcription antitermination protein NusG [Listeria monocytogenes
           EGD-e]
 gi|46906479|ref|YP_012868.1| transcription antitermination protein NusG [Listeria monocytogenes
           str. 4b F2365]
 gi|47094614|ref|ZP_00232254.1| transcription antitermination factor NusG [Listeria monocytogenes
           str. 4b H7858]
 gi|217965667|ref|YP_002351345.1| transcription termination/antitermination factor NusG [Listeria
           monocytogenes HCC23]
 gi|224498908|ref|ZP_03667257.1| transcription antitermination protein NusG [Listeria monocytogenes
           Finland 1988]
 gi|224502460|ref|ZP_03670767.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL R2-561]
 gi|226222874|ref|YP_002756981.1| transcription antitermination factor [Listeria monocytogenes
           Clip81459]
 gi|254825710|ref|ZP_05230711.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J1-194]
 gi|254828706|ref|ZP_05233393.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL N3-165]
 gi|254831929|ref|ZP_05236584.1| transcription antitermination protein NusG [Listeria monocytogenes
           10403S]
 gi|254853487|ref|ZP_05242835.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL R2-503]
 gi|254900573|ref|ZP_05260497.1| transcription antitermination protein NusG [Listeria monocytogenes
           J0161]
 gi|254913476|ref|ZP_05263488.1| transcription antitermination factor NusG [Listeria monocytogenes
           J2818]
 gi|254932465|ref|ZP_05265824.1| transcription antitermination protein NusG [Listeria monocytogenes
           HPB2262]
 gi|254937943|ref|ZP_05269640.1| transcription antitermination protein NusG [Listeria monocytogenes
           F6900]
 gi|254991754|ref|ZP_05273944.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J2-064]
 gi|255026643|ref|ZP_05298629.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J2-003]
 gi|255030086|ref|ZP_05302037.1| transcription antitermination protein NusG [Listeria monocytogenes
           LO28]
 gi|255520310|ref|ZP_05387547.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J1-175]
 gi|284800540|ref|YP_003412405.1| transcription antitermination protein NusG [Listeria monocytogenes
           08-5578]
 gi|284993726|ref|YP_003415494.1| transcription antitermination protein NusG [Listeria monocytogenes
           08-5923]
 gi|290892613|ref|ZP_06555606.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J2-071]
 gi|300764629|ref|ZP_07074621.1| transcription antitermination factor NusG [Listeria monocytogenes
           FSL N1-017]
 gi|315274839|ref|ZP_07869502.1| transcription termination/antitermination factor NusG [Listeria
           marthii FSL S4-120]
 gi|16409611|emb|CAD00773.1| transcription antitermination factor [Listeria monocytogenes EGD-e]
 gi|46879743|gb|AAT03045.1| transcription antitermination factor NusG [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017011|gb|EAL07904.1| transcription antitermination factor NusG [Listeria monocytogenes
           str. 4b H7858]
 gi|217334937|gb|ACK40731.1| transcription termination/antitermination factor NusG [Listeria
           monocytogenes HCC23]
 gi|225875336|emb|CAS04033.1| transcription antitermination factor [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258601111|gb|EEW14436.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL N3-165]
 gi|258606859|gb|EEW19467.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL R2-503]
 gi|258610552|gb|EEW23160.1| transcription antitermination protein NusG [Listeria monocytogenes
           F6900]
 gi|284056102|gb|ADB67043.1| transcription antitermination protein NusG [Listeria monocytogenes
           08-5578]
 gi|284059193|gb|ADB70132.1| transcription antitermination protein NusG [Listeria monocytogenes
           08-5923]
 gi|290557922|gb|EFD91443.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J2-071]
 gi|293584021|gb|EFF96053.1| transcription antitermination protein NusG [Listeria monocytogenes
           HPB2262]
 gi|293591484|gb|EFF99818.1| transcription antitermination factor NusG [Listeria monocytogenes
           J2818]
 gi|293594954|gb|EFG02715.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J1-194]
 gi|300514736|gb|EFK41791.1| transcription antitermination factor NusG [Listeria monocytogenes
           FSL N1-017]
 gi|307569785|emb|CAR82964.1| transcription antitermination factor [Listeria monocytogenes L99]
 gi|313611163|gb|EFR85988.1| transcription termination/antitermination factor NusG [Listeria
           monocytogenes FSL F2-208]
 gi|313615704|gb|EFR88994.1| transcription termination/antitermination factor NusG [Listeria
           marthii FSL S4-120]
 gi|328467855|gb|EGF38895.1| transcription antitermination protein NusG [Listeria monocytogenes
           1816]
 gi|328476087|gb|EGF46796.1| transcription antitermination protein NusG [Listeria monocytogenes
           220]
          Length = 177

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E + I+  +    +R 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKR- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+GE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EK+
Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177


>gi|15676054|ref|NP_273184.1| transcription antitermination protein NusG [Neisseria meningitidis
           MC58]
 gi|59802177|ref|YP_208889.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           FA 1090]
 gi|121634004|ref|YP_974249.1| transcription antitermination protein NusG [Neisseria meningitidis
           FAM18]
 gi|218767186|ref|YP_002341698.1| transcription antitermination protein NusG [Neisseria meningitidis
           Z2491]
 gi|239997908|ref|ZP_04717832.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           35/02]
 gi|240015113|ref|ZP_04722026.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           DGI18]
 gi|240017562|ref|ZP_04724102.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           FA6140]
 gi|240081705|ref|ZP_04726248.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           FA19]
 gi|240113981|ref|ZP_04728471.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           MS11]
 gi|240116717|ref|ZP_04730779.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           PID18]
 gi|240118939|ref|ZP_04733001.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           PID1]
 gi|240122184|ref|ZP_04735146.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           PID24-1]
 gi|240124477|ref|ZP_04737433.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           PID332]
 gi|240124655|ref|ZP_04737541.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           SK-92-679]
 gi|240129151|ref|ZP_04741812.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254494738|ref|ZP_05107909.1| transcription antitermination protein [Neisseria gonorrhoeae 1291]
 gi|254805828|ref|YP_003084049.1| putative transcription antitermination protein [Neisseria
           meningitidis alpha14]
 gi|260439524|ref|ZP_05793340.1| transcription antitermination protein NusG [Neisseria gonorrhoeae
           DGI2]
 gi|268593758|ref|ZP_06127925.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
           35/02]
 gi|268597803|ref|ZP_06131970.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
           FA19]
 gi|268600046|ref|ZP_06134213.1| transcription antitermination protein [Neisseria gonorrhoeae MS11]
 gi|268602388|ref|ZP_06136555.1| transcription antitermination protein [Neisseria gonorrhoeae PID18]
 gi|268604650|ref|ZP_06138817.1| transcription antitermination protein [Neisseria gonorrhoeae PID1]
 gi|268683108|ref|ZP_06149970.1| transcription antitermination protein [Neisseria gonorrhoeae
           PID332]
 gi|268683229|ref|ZP_06150091.1| transcription antitermination protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687535|ref|ZP_06154397.1| transcription antitermination protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291042759|ref|ZP_06568500.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
           DGI2]
 gi|293398220|ref|ZP_06642425.1| transcription termination/antitermination factor NusG [Neisseria
           gonorrhoeae F62]
 gi|304388927|ref|ZP_07370974.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis ATCC 13091]
 gi|54037929|sp|P65592|NUSG_NEIMB RecName: Full=Transcription antitermination protein nusG
 gi|54041679|sp|P65591|NUSG_NEIMA RecName: Full=Transcription antitermination protein nusG
 gi|7225343|gb|AAF40585.1| transcription antitermination protein NusG [Neisseria meningitidis
           MC58]
 gi|59719072|gb|AAW90477.1| putative transcription antitermination protein [Neisseria
           gonorrhoeae FA 1090]
 gi|120865710|emb|CAM09437.1| transcription antitermination protein [Neisseria meningitidis
           FAM18]
 gi|121051194|emb|CAM07465.1| transcription antitermination protein [Neisseria meningitidis
           Z2491]
 gi|226513778|gb|EEH63123.1| transcription antitermination protein [Neisseria gonorrhoeae 1291]
 gi|254669370|emb|CBA08487.1| putative transcription antitermination protein [Neisseria
           meningitidis alpha14]
 gi|261391664|emb|CAX49112.1| transcription antitermination protein NusG [Neisseria meningitidis
           8013]
 gi|268547147|gb|EEZ42565.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
           35/02]
 gi|268551591|gb|EEZ46610.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
           FA19]
 gi|268584177|gb|EEZ48853.1| transcription antitermination protein [Neisseria gonorrhoeae MS11]
 gi|268586519|gb|EEZ51195.1| transcription antitermination protein [Neisseria gonorrhoeae PID18]
 gi|268588781|gb|EEZ53457.1| transcription antitermination protein [Neisseria gonorrhoeae PID1]
 gi|268623392|gb|EEZ55792.1| transcription antitermination protein [Neisseria gonorrhoeae
           PID332]
 gi|268623513|gb|EEZ55913.1| transcription antitermination protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627819|gb|EEZ60219.1| transcription antitermination protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291013193|gb|EFE05159.1| transcription antitermination protein nusG [Neisseria gonorrhoeae
           DGI2]
 gi|291611483|gb|EFF40553.1| transcription termination/antitermination factor NusG [Neisseria
           gonorrhoeae F62]
 gi|304337061|gb|EFM03248.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis ATCC 13091]
 gi|308388344|gb|ADO30664.1| transcription antitermination protein [Neisseria meningitidis
           alpha710]
 gi|319411391|emb|CBY91802.1| transcription antitermination protein NusG [Neisseria meningitidis
           WUE 2594]
 gi|325127120|gb|EGC50074.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis N1568]
 gi|325133040|gb|EGC55712.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M6190]
 gi|325135132|gb|EGC57758.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M13399]
 gi|325137185|gb|EGC59780.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M0579]
 gi|325139019|gb|EGC61565.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis ES14902]
 gi|325141141|gb|EGC63641.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis CU385]
 gi|325145324|gb|EGC67601.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M01-240013]
 gi|325197415|gb|ADY92871.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis G2136]
 gi|325199340|gb|ADY94795.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis H44/76]
 gi|325203039|gb|ADY98493.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M01-240149]
 gi|325205219|gb|ADZ00672.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M04-240196]
 gi|325207162|gb|ADZ02614.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis NZ-05/33]
          Length = 178

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK     +  R++R  +     +I +P E+VV +R GRK  SER+ 
Sbjct: 1   MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G     P+P++  E E I+ QV+  +++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177


>gi|260770575|ref|ZP_05879507.1| transcription antitermination protein NusG [Vibrio furnissii CIP
           102972]
 gi|260614405|gb|EEX39592.1| transcription antitermination protein NusG [Vibrio furnissii CIP
           102972]
 gi|315178369|gb|ADT85283.1| transcription antiterminator [Vibrio furnissii NCTC 11218]
          Length = 182

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|226309792|ref|YP_002769686.1| transcription antitermination protein [Brevibacillus brevis NBRC
           100599]
 gi|226092740|dbj|BAH41182.1| transcription antitermination protein [Brevibacillus brevis NBRC
           100599]
          Length = 178

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 5/177 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  RL   G++  +  + +P+E  V  + G+K    ++ 
Sbjct: 1   MEKAWYVLHTYSGYENKVKTNLEKRLESMGMEDKIFRVLVPTEEEVETKDGKKRTVTKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+ +   E + I+ Q+   ++ P
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALRPEEADTILKQMG--IEIP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              V F + + V V+DGPF++  G +  +  ++ +V V V IFGR TPVEL + QV+
Sbjct: 119 KIRVDFALRDMVRVTDGPFSNRTGEIIEIYPDRQKVRVLVDIFGRETPVELDFTQVQ 175


>gi|156972590|ref|YP_001443497.1| transcription antitermination protein NusG [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524184|gb|ABU69270.1| hypothetical protein VIBHAR_00230 [Vibrio harveyi ATCC BAA-1116]
          Length = 182

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|68249293|ref|YP_248405.1| transcription antitermination protein NusG [Haemophilus influenzae
           86-028NP]
 gi|145628433|ref|ZP_01784234.1| transcription antitermination protein NusG [Haemophilus influenzae
           22.1-21]
 gi|145633842|ref|ZP_01789564.1| transcription antitermination protein NusG [Haemophilus influenzae
           3655]
 gi|145635955|ref|ZP_01791640.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittAA]
 gi|145637968|ref|ZP_01793607.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittHH]
 gi|145639477|ref|ZP_01795082.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittII]
 gi|145642380|ref|ZP_01797940.1| transcription antitermination protein NusG [Haemophilus influenzae
           R3021]
 gi|148826639|ref|YP_001291392.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittEE]
 gi|148827885|ref|YP_001292638.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittGG]
 gi|229845550|ref|ZP_04465678.1| transcription antitermination protein NusG [Haemophilus influenzae
           6P18H1]
 gi|229847175|ref|ZP_04467279.1| transcription antitermination protein NusG [Haemophilus influenzae
           7P49H1]
 gi|260581525|ref|ZP_05849333.1| transcription termination/antitermination factor NusG [Haemophilus
           influenzae RdAW]
 gi|260583372|ref|ZP_05851143.1| transcription termination/antitermination factor NusG [Haemophilus
           influenzae NT127]
 gi|319775442|ref|YP_004137930.1| transcription antitermination protein NusG [Haemophilus influenzae
           F3047]
 gi|319897848|ref|YP_004136045.1| transcription antitermination protein nusg [Haemophilus influenzae
           F3031]
 gi|329122528|ref|ZP_08251112.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
 gi|68057492|gb|AAX87745.1| transcription antitermination protein NusG [Haemophilus influenzae
           86-028NP]
 gi|144980208|gb|EDJ89867.1| transcription antitermination protein NusG [Haemophilus influenzae
           22.1-21]
 gi|144985284|gb|EDJ92123.1| transcription antitermination protein NusG [Haemophilus influenzae
           3655]
 gi|145266788|gb|EDK06807.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittAA]
 gi|145268834|gb|EDK08798.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittHH]
 gi|145271524|gb|EDK11436.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittII]
 gi|145272923|gb|EDK12809.1| transcription antitermination protein NusG [Haemophilus influenzae
           22.4-21]
 gi|148716799|gb|ABQ99009.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittEE]
 gi|148719127|gb|ABR00255.1| transcription antitermination protein NusG [Haemophilus influenzae
           PittGG]
 gi|229809851|gb|EEP45573.1| transcription antitermination protein NusG [Haemophilus influenzae
           7P49H1]
 gi|229811566|gb|EEP47267.1| transcription antitermination protein NusG [Haemophilus influenzae
           6P18H1]
 gi|260091823|gb|EEW75778.1| transcription termination/antitermination factor NusG [Haemophilus
           influenzae RdAW]
 gi|260093577|gb|EEW77494.1| transcription termination/antitermination factor NusG [Haemophilus
           influenzae NT127]
 gi|301169435|emb|CBW29035.1| transcription termination factor [Haemophilus influenzae 10810]
 gi|309751684|gb|ADO81668.1| Transcription antitermination protein NusG [Haemophilus influenzae
           R2866]
 gi|309973786|gb|ADO96987.1| Transcription antitermination protein NusG [Haemophilus influenzae
           R2846]
 gi|317433354|emb|CBY81733.1| transcription antitermination protein NusG [Haemophilus influenzae
           F3031]
 gi|317450033|emb|CBY86247.1| transcription antitermination protein NusG [Haemophilus influenzae
           F3047]
 gi|327473157|gb|EGF18580.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
          Length = 185

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/175 (40%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   + +  ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 10  KRWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++  E + I+N++E    +P    
Sbjct: 70  GYVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRN 129

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +  GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI
Sbjct: 130 EYHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 184


>gi|261401760|ref|ZP_05987885.1| transcription termination/antitermination factor NusG [Neisseria
           lactamica ATCC 23970]
 gi|269208098|gb|EEZ74553.1| transcription termination/antitermination factor NusG [Neisseria
           lactamica ATCC 23970]
          Length = 178

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK    ++  R++R  +     +I +P E+VV +R GRK  SER+ 
Sbjct: 1   MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  ++ +K TP+V GF+G     P P++  E E I+ QV+   ++P  
Sbjct: 61  YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGSEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG+++ V++GPFA FNG+V  V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177


>gi|237809527|ref|YP_002893967.1| NusG antitermination factor [Tolumonas auensis DSM 9187]
 gi|237501788|gb|ACQ94381.1| NusG antitermination factor [Tolumonas auensis DSM 9187]
          Length = 180

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 121/175 (69%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    EI +P+E VV +R G+K  SER+FFP
Sbjct: 6   MRWYVVQAFSGFEGRVAKSLKEHIKMHGMEDQFGEILVPTEEVVEMRAGQKRKSERKFFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D  +H +++ P+V+GF+G   + P+P+TD E + I+N+++ +V +P    
Sbjct: 66  GYVLVQMIMNDASWHLVRNVPRVMGFIGGTSDRPAPITDKEADAILNRLQESVDKPKHKT 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE + VSDGPFA FNG V+ VD +KSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 126 LFEPGEVIRVSDGPFADFNGTVEEVDYDKSRMKVSVLIFGRATPVELDFSQVEKV 180


>gi|120596977|ref|YP_961551.1| NusG antitermination factor [Shewanella sp. W3-18-1]
 gi|146294853|ref|YP_001185277.1| NusG antitermination factor [Shewanella putrefaciens CN-32]
 gi|120557070|gb|ABM22997.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1]
 gi|145566543|gb|ABP77478.1| transcription antitermination protein nusG [Shewanella putrefaciens
           CN-32]
 gi|319424568|gb|ADV52642.1| NusG antitermination factor [Shewanella putrefaciens 200]
          Length = 183

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E V+ +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++D E + I+ +++     P   V
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182


>gi|297564023|ref|YP_003682996.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848472|gb|ADH70490.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 280

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  EK+   ++  R     ++  + ++ +P   V  V+ G++     +  PGY
Sbjct: 96  WYVVHTYAGYEKRVKANVESRTQSLNMEEYIFQVEVPEHEVTEVKSGKRQQVTEKVLPGY 155

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD+ +  I++TP V GF+G    P+P++ +E+  ++              +  
Sbjct: 156 VLVRMDLTDESWSAIRNTPGVTGFVGLSNKPAPLSLTEVAKLLAPEPEVEPEQAQQARTA 215

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
             V      V +EVGE V V +GPFA+    V  ++ +  ++ V V IFGR TPVEL++N
Sbjct: 216 GGVGEARMDVAYEVGESVTVMEGPFATLPATVSEINPDTQKLKVLVSIFGRETPVELSFN 275

Query: 172 QVEKI 176
           QV KI
Sbjct: 276 QVAKI 280


>gi|188584822|ref|YP_001916367.1| transcription antitermination protein nusG [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349509|gb|ACB83779.1| transcription antitermination protein nusG [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 174

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 109/176 (61%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +W++V  YS  E K   ++  R++  G+D  +  I +P+E  ++++ GR+   E++ 
Sbjct: 1   MEKQWFVVHTYSGYENKVKTNLEKRVASMGMDDKIFRIVVPTETQINIKDGRRQEKEKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYV+++ VM +  ++ +++TP V GF+G+G  P P+ + E+  IM Q+    + P   
Sbjct: 61  FPGYVIVEMVMDEDSWYVVRNTPGVTGFVGSGAKPVPLNEDEVASIMKQMG--YEEPKKE 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  E G+ V + +GPF +F+G ++ V  +K +V V V +FGR TPVEL + QVEK+
Sbjct: 119 VDLEAGQEVKILEGPFENFSGQIEEVYPDKEKVKVTVSMFGRETPVELDFEQVEKV 174


>gi|17987027|ref|NP_539661.1| transcription antitermination protein NusG [Brucella melitensis bv.
           1 str. 16M]
 gi|23502126|ref|NP_698253.1| transcription antitermination protein NusG [Brucella suis 1330]
 gi|62290159|ref|YP_221952.1| transcription antitermination protein NusG [Brucella abortus bv. 1
           str. 9-941]
 gi|82700081|ref|YP_414655.1| transcription antitermination protein NusG [Brucella melitensis
           biovar Abortus 2308]
 gi|148560341|ref|YP_001259167.1| transcription antitermination protein NusG [Brucella ovis ATCC
           25840]
 gi|161619204|ref|YP_001593091.1| transcription antitermination protein NusG [Brucella canis ATCC
           23365]
 gi|163843513|ref|YP_001627917.1| transcription antitermination protein NusG [Brucella suis ATCC
           23445]
 gi|189024395|ref|YP_001935163.1| Bacterial transcription antitermination protein NusG [Brucella
           abortus S19]
 gi|225627717|ref|ZP_03785754.1| transcription termination/antitermination factor NusG [Brucella
           ceti str. Cudo]
 gi|225852745|ref|YP_002732978.1| transcription antitermination protein NusG [Brucella melitensis
           ATCC 23457]
 gi|237815667|ref|ZP_04594664.1| transcription termination/antitermination factor NusG [Brucella
           abortus str. 2308 A]
 gi|254689465|ref|ZP_05152719.1| transcription antitermination protein NusG [Brucella abortus bv. 6
           str. 870]
 gi|254697602|ref|ZP_05159430.1| transcription antitermination protein NusG [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701988|ref|ZP_05163816.1| transcription antitermination protein NusG [Brucella suis bv. 5
           str. 513]
 gi|254704530|ref|ZP_05166358.1| transcription antitermination protein NusG [Brucella suis bv. 3
           str. 686]
 gi|254706574|ref|ZP_05168402.1| transcription antitermination protein NusG [Brucella pinnipedialis
           M163/99/10]
 gi|254710316|ref|ZP_05172127.1| transcription antitermination protein NusG [Brucella pinnipedialis
           B2/94]
 gi|254730494|ref|ZP_05189072.1| transcription antitermination protein NusG [Brucella abortus bv. 4
           str. 292]
 gi|256031810|ref|ZP_05445424.1| transcription antitermination protein NusG [Brucella pinnipedialis
           M292/94/1]
 gi|256044895|ref|ZP_05447799.1| transcription antitermination protein NusG [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256113803|ref|ZP_05454603.1| transcription antitermination protein NusG [Brucella melitensis bv.
           3 str. Ether]
 gi|256159983|ref|ZP_05457698.1| transcription antitermination protein NusG [Brucella ceti
           M490/95/1]
 gi|256255211|ref|ZP_05460747.1| transcription antitermination protein NusG [Brucella ceti B1/94]
 gi|256257712|ref|ZP_05463248.1| transcription antitermination protein NusG [Brucella abortus bv. 9
           str. C68]
 gi|256263768|ref|ZP_05466300.1| bacterial transcription antitermination protein NusG [Brucella
           melitensis bv. 2 str. 63/9]
 gi|256369671|ref|YP_003107181.1| transcription antitermination protein NusG [Brucella microti CCM
           4915]
 gi|260168944|ref|ZP_05755755.1| transcription antitermination protein NusG [Brucella sp. F5/99]
 gi|260546704|ref|ZP_05822443.1| bacterial transcription antitermination protein NusG [Brucella
           abortus NCTC 8038]
 gi|260565503|ref|ZP_05835987.1| bacterial transcription antitermination protein NusG [Brucella
           melitensis bv. 1 str. 16M]
 gi|260566226|ref|ZP_05836696.1| bacterial transcription antitermination protein NusG [Brucella suis
           bv. 4 str. 40]
 gi|260754989|ref|ZP_05867337.1| transcription antitermination protein NusG [Brucella abortus bv. 6
           str. 870]
 gi|260758205|ref|ZP_05870553.1| transcription antitermination protein NusG [Brucella abortus bv. 4
           str. 292]
 gi|260762032|ref|ZP_05874375.1| transcription antitermination protein NusG [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883999|ref|ZP_05895613.1| transcription antitermination protein NusG [Brucella abortus bv. 9
           str. C68]
 gi|261222407|ref|ZP_05936688.1| transcription antitermination protein NusG [Brucella ceti B1/94]
 gi|261314033|ref|ZP_05953230.1| transcription antitermination protein NusG [Brucella pinnipedialis
           M163/99/10]
 gi|261317880|ref|ZP_05957077.1| transcription antitermination protein NusG [Brucella pinnipedialis
           B2/94]
 gi|261752556|ref|ZP_05996265.1| transcription antitermination protein NusG [Brucella suis bv. 5
           str. 513]
 gi|261755214|ref|ZP_05998923.1| transcription antitermination protein NusG [Brucella suis bv. 3
           str. 686]
 gi|261758437|ref|ZP_06002146.1| bacterial transcription antitermination protein NusG [Brucella sp.
           F5/99]
 gi|265988909|ref|ZP_06101466.1| transcription antitermination protein NusG [Brucella pinnipedialis
           M292/94/1]
 gi|265991323|ref|ZP_06103880.1| transcription antitermination protein NusG [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265995160|ref|ZP_06107717.1| transcription antitermination protein NusG [Brucella melitensis bv.
           3 str. Ether]
 gi|265998373|ref|ZP_06110930.1| transcription antitermination protein NusG [Brucella ceti
           M490/95/1]
 gi|294852584|ref|ZP_06793257.1| transcription termination/antitermination factor NusG [Brucella sp.
           NVSL 07-0026]
 gi|297248553|ref|ZP_06932271.1| transcription termination/antitermination factor NusG [Brucella
           abortus bv. 5 str. B3196]
 gi|306844153|ref|ZP_07476747.1| transcription termination/antitermination factor NusG [Brucella sp.
           BO1]
 gi|17982681|gb|AAL51925.1| transcription antitermination protein nusg [Brucella melitensis bv.
           1 str. 16M]
 gi|23348088|gb|AAN30168.1| transcription antitermination protein NusG [Brucella suis 1330]
 gi|62196291|gb|AAX74591.1| NusG, transcription antitermination protein NusG [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616182|emb|CAJ11225.1| Bacterial transcription antitermination protein NusG:KOW:NGN:KOW
           (Kyprides, Ouzounis, Woese) motif [Brucella melitensis
           biovar Abortus 2308]
 gi|148371598|gb|ABQ61577.1| transcription termination/antitermination factor NusG [Brucella
           ovis ATCC 25840]
 gi|161336015|gb|ABX62320.1| transcription termination/antitermination factor NusG [Brucella
           canis ATCC 23365]
 gi|163674236|gb|ABY38347.1| transcription termination/antitermination factor NusG [Brucella
           suis ATCC 23445]
 gi|189019967|gb|ACD72689.1| Bacterial transcription antitermination protein NusG [Brucella
           abortus S19]
 gi|225617722|gb|EEH14767.1| transcription termination/antitermination factor NusG [Brucella
           ceti str. Cudo]
 gi|225641110|gb|ACO01024.1| transcription termination/antitermination factor NusG [Brucella
           melitensis ATCC 23457]
 gi|237788965|gb|EEP63176.1| transcription termination/antitermination factor NusG [Brucella
           abortus str. 2308 A]
 gi|255999833|gb|ACU48232.1| transcription antitermination protein NusG [Brucella microti CCM
           4915]
 gi|260095754|gb|EEW79631.1| bacterial transcription antitermination protein NusG [Brucella
           abortus NCTC 8038]
 gi|260151571|gb|EEW86665.1| bacterial transcription antitermination protein NusG [Brucella
           melitensis bv. 1 str. 16M]
 gi|260155744|gb|EEW90824.1| bacterial transcription antitermination protein NusG [Brucella suis
           bv. 4 str. 40]
 gi|260668523|gb|EEX55463.1| transcription antitermination protein NusG [Brucella abortus bv. 4
           str. 292]
 gi|260672464|gb|EEX59285.1| transcription antitermination protein NusG [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675097|gb|EEX61918.1| transcription antitermination protein NusG [Brucella abortus bv. 6
           str. 870]
 gi|260873527|gb|EEX80596.1| transcription antitermination protein NusG [Brucella abortus bv. 9
           str. C68]
 gi|260920991|gb|EEX87644.1| transcription antitermination protein NusG [Brucella ceti B1/94]
 gi|261297103|gb|EEY00600.1| transcription antitermination protein NusG [Brucella pinnipedialis
           B2/94]
 gi|261303059|gb|EEY06556.1| transcription antitermination protein NusG [Brucella pinnipedialis
           M163/99/10]
 gi|261738421|gb|EEY26417.1| bacterial transcription antitermination protein NusG [Brucella sp.
           F5/99]
 gi|261742309|gb|EEY30235.1| transcription antitermination protein NusG [Brucella suis bv. 5
           str. 513]
 gi|261744967|gb|EEY32893.1| transcription antitermination protein NusG [Brucella suis bv. 3
           str. 686]
 gi|262552841|gb|EEZ08831.1| transcription antitermination protein NusG [Brucella ceti
           M490/95/1]
 gi|262766273|gb|EEZ12062.1| transcription antitermination protein NusG [Brucella melitensis bv.
           3 str. Ether]
 gi|263002107|gb|EEZ14682.1| transcription antitermination protein NusG [Brucella melitensis bv.
           1 str. Rev.1]
 gi|263093879|gb|EEZ17830.1| bacterial transcription antitermination protein NusG [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264661106|gb|EEZ31367.1| transcription antitermination protein NusG [Brucella pinnipedialis
           M292/94/1]
 gi|294821173|gb|EFG38172.1| transcription termination/antitermination factor NusG [Brucella sp.
           NVSL 07-0026]
 gi|297175722|gb|EFH35069.1| transcription termination/antitermination factor NusG [Brucella
           abortus bv. 5 str. B3196]
 gi|306275596|gb|EFM57328.1| transcription termination/antitermination factor NusG [Brucella sp.
           BO1]
 gi|326409270|gb|ADZ66335.1| Bacterial transcription antitermination protein NusG [Brucella
           melitensis M28]
 gi|326538979|gb|ADZ87194.1| transcription termination/antitermination factor NusG [Brucella
           melitensis M5-90]
          Length = 175

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL  L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD V+  IK+TPKV GFLG    P PV+  E++ I+NQV+  V+RP +S
Sbjct: 61  FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175


>gi|56459451|ref|YP_154732.1| transcription antiterminator NusG [Idiomarina loihiensis L2TR]
 gi|56178461|gb|AAV81183.1| Transcription antiterminator NusG [Idiomarina loihiensis L2TR]
          Length = 179

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/178 (44%), Positives = 114/178 (64%), Gaps = 3/178 (1%)

Query: 1   MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
           M+   RWY+VQ +S  E +  ES+   +   G++    EI +P E VV +R G +  SER
Sbjct: 1   MSDKKRWYVVQAFSGYEARVSESLKEHIKMHGMEDKFGEILVPKEEVVEMRGGVRRKSER 60

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRP 117
           +FFPGYVL++  M +  +H IK  P+V+GF+G   + P+P++  E + I+++++ +  +P
Sbjct: 61  KFFPGYVLVEMDMDEDAWHLIKSVPRVLGFIGGSSDRPTPISKKEADAILDRLQDSADKP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                FE GE V V+DGPFA FNG V+ VD EKSRV V V IFGR TPVEL + Q+EK
Sbjct: 121 KPKTLFEPGEVVRVNDGPFADFNGTVEEVDYEKSRVTVSVSIFGRATPVELEFGQIEK 178


>gi|212634816|ref|YP_002311341.1| transcription antitermination protein NusG [Shewanella
           piezotolerans WP3]
 gi|212556300|gb|ACJ28754.1| Transcription antitermination protein NusG [Shewanella
           piezotolerans WP3]
          Length = 183

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVCKSLNEHIKMHSMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E + I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTTESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 129 MFEAGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182


>gi|209696271|ref|YP_002264201.1| transcription antitermination protein NusG [Aliivibrio salmonicida
           LFI1238]
 gi|208010224|emb|CAQ80555.1| transcription antitermination protein NusG [Aliivibrio salmonicida
           LFI1238]
          Length = 181

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVSQSLREYIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ ++ ++  P+V+GF+G   + P+P+TD E + I+N+++ A + P    
Sbjct: 67  GYVLVQMIMNDESWYLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLQQASEAPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V++GPFA FNG V+NVD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEAGEVVRVTEGPFADFNGTVENVDYEKSRIKVSVSIFGRATPVELEFSQVEK 180


>gi|312200033|ref|YP_004020094.1| NusG antitermination factor [Frankia sp. EuI1c]
 gi|311231369|gb|ADP84224.1| NusG antitermination factor [Frankia sp. EuI1c]
          Length = 261

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 2/174 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+S   ++  + +I +P E V  V+ G++    ++ +PGY
Sbjct: 88  WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPLEEVPVVKNGKRQMVTQKKYPGY 147

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRPVSSVF 122
           + ++  +TD+ +  +++TP V GF+G    PSP+   E+  I+     +      V    
Sbjct: 148 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRREEVFSILVPPAKKEKKVETVKVQE 207

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F+VGE V V DGPFA+    +  ++ +  R+ V V IFGR TPVEL +NQV KI
Sbjct: 208 FDVGESVTVMDGPFATLPATISEINVDAQRLKVLVSIFGRETPVELQFNQVAKI 261


>gi|284992892|ref|YP_003411446.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160]
 gi|284066137|gb|ADB77075.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160]
          Length = 272

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 13/185 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    ++  + +I +P+E V  ++ G++    R+  PGY
Sbjct: 88  WYVIHSYAGYENKVKTNLESRIQSLDMEDYIFQIEVPTEEVTEIKNGKRTQVNRKKLPGY 147

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           +L++  + D+ +  +++TP V GF+G    PSP++  E+  ++           +     
Sbjct: 148 LLVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLSIDEVVSLLAPAATPQAARTTETTST 207

Query: 121 ---------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                    V FEVGE V V DGPFA+    +  ++ E+ ++ V V IFGR TPVEL++N
Sbjct: 208 TTAAAPTTVVDFEVGESVTVMDGPFATLPATINEINAEQQKLQVLVSIFGRETPVELSFN 267

Query: 172 QVEKI 176
           QV+KI
Sbjct: 268 QVQKI 272


>gi|325203246|gb|ADY98699.1| transcription termination/antitermination factor NusG [Neisseria
           meningitidis M01-240355]
          Length = 178

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK     +  R++R  +     +I +P E+VV +R GRK  SER+ 
Sbjct: 1   MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD  +H +K TP+V GF+G     P+P++  E E I+ QV+  +++P  
Sbjct: 61  YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQKEAEIILQQVQTGIEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177


>gi|317126842|ref|YP_004093124.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522]
 gi|315471790|gb|ADU28393.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522]
          Length = 177

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  RL    +   +  + +P E    V+ G+     ++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKTNLEKRLESMDMSDKIFRVLVPVEEETEVKNGKSKQVTKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYV+++ +MTD  ++ +++TP V GF+G+   G  P+P+   E+E I+ Q+   V+ P
Sbjct: 61  FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVEGILRQMG--VEEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V +GPFA+F G V+++  +K ++ V V +FGR TPVEL + QVEK+
Sbjct: 119 KADIDFELKESVKVKEGPFANFIGTVEDIHADKQKLKVHVNMFGRETPVELDFTQVEKL 177


>gi|255019485|ref|ZP_05291581.1| Transcription antitermination protein NusG [Acidithiobacillus
           caldus ATCC 51756]
 gi|254971080|gb|EET28546.1| Transcription antitermination protein NusG [Acidithiobacillus
           caldus ATCC 51756]
          Length = 175

 Score =  173 bits (439), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 115/175 (65%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  +S+ EKK    I  R  R GL+    EI +P E VV +R G+K +S+R F+P
Sbjct: 1   MRWYVVHAFSSFEKKVQAEIRERAKREGLEDQFGEILVPVEEVVEMRNGQKTSSQRMFYP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K TP+V GF+G     P P++++E   I+++++  V++P    
Sbjct: 61  GYVLVQMEMNDQTWHLVKHTPRVTGFVGGSVGKPHPLSEAEANAILDRIKEGVEKPRPKF 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F+ GE+V V DGPF  FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEKI
Sbjct: 121 SFDAGEQVRVIDGPFKDFNGVVEEVNYEKSKLRVSVTIFGRSTPVELDFGQVEKI 175


>gi|254719303|ref|ZP_05181114.1| transcription antitermination protein NusG [Brucella sp. 83/13]
 gi|265984304|ref|ZP_06097039.1| transcription antitermination protein NusG [Brucella sp. 83/13]
 gi|306838948|ref|ZP_07471773.1| transcription termination/antitermination factor NusG [Brucella sp.
           NF 2653]
 gi|306840285|ref|ZP_07473058.1| transcription termination/antitermination factor NusG [Brucella sp.
           BO2]
 gi|264662896|gb|EEZ33157.1| transcription antitermination protein NusG [Brucella sp. 83/13]
 gi|306289740|gb|EFM60926.1| transcription termination/antitermination factor NusG [Brucella sp.
           BO2]
 gi|306405981|gb|EFM62235.1| transcription termination/antitermination factor NusG [Brucella sp.
           NF 2653]
          Length = 175

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL  L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD V+  IK+TPKV GFLG    P PV+  E++ I+NQV+  V+RP +S
Sbjct: 61  FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASFNG+V+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGVVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175


>gi|56477582|ref|YP_159171.1| transcription antitermination protein NusG [Aromatoleum aromaticum
           EbN1]
 gi|56313625|emb|CAI08270.1| transcription antitermination protein [Aromatoleum aromaticum EbN1]
          Length = 177

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWY+V  YS  EK    ++  R++RSG+     +I +P E VV ++ G+K  SER+F
Sbjct: 1   MTKRWYVVHAYSGFEKSVQRALVDRINRSGMQDFFGQILVPVEEVVEMKSGQKSISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D+ +H +K TPKV GF+G     PSP+++ E+E IM Q++  V++P  
Sbjct: 61  FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPSPISEKEVEKIMQQMQEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V +E+GE V V +GPF  F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK
Sbjct: 121 KVLWELGEVVRVKEGPFTDFHGAVEDVNYDKSKLRVSVTIFGRATPVELDFSQVEK 176


>gi|308171992|ref|YP_003918697.1| transcription antitermination factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|307604856|emb|CBI41227.1| transcription antitermination factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|328910063|gb|AEB61659.1| transcription antitermination factor [Bacillus amyloliquefaciens
           LL3]
          Length = 177

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E E I+ ++    ++ 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRMGMDERK- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 120 -TDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177


>gi|119773342|ref|YP_926082.1| transcription antitermination protein NusG [Shewanella amazonensis
           SB2B]
 gi|119765842|gb|ABL98412.1| transcription antitermination protein nusG [Shewanella amazonensis
           SB2B]
          Length = 183

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVAKSLVEHIKMHGMEQYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P+TD E + I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPITDREADAILRRLQETTESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK
Sbjct: 129 MYEPGEVVRVVDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182


>gi|269962515|ref|ZP_06176863.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3]
 gi|269832710|gb|EEZ86821.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3]
          Length = 182

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHAMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|194291040|ref|YP_002006947.1| transcription antitermination protein nusg [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224875|emb|CAQ70886.1| transcription termination factor [Cupriavidus taiwanensis LMG
           19424]
          Length = 193

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+ +      I +PSE VV ++ G K  +ERRFFP
Sbjct: 19  KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E++ IM Q++  V++P    
Sbjct: 79  GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193


>gi|322513223|ref|ZP_08066349.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Actinobacillus ureae ATCC 25976]
 gi|322120999|gb|EFX92840.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Actinobacillus ureae ATCC 25976]
          Length = 187

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  +ER+FFP
Sbjct: 12  MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFP 71

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++  E E I+N+V+   ++P    
Sbjct: 72  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREAERILNRVQETAEKPRHRN 131

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            ++ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EYQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185


>gi|300702760|ref|YP_003744361.1| transcription termination factor [Ralstonia solanacearum CFBP2957]
 gi|299070422|emb|CBJ41717.1| transcription termination factor [Ralstonia solanacearum CFBP2957]
          Length = 194

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    S+  R+ R+GL H+   I +PSE VV ++ G K  +ERRFFPG
Sbjct: 21  RWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++  MTD+ +H +K+T KV GF+G  G  P+P++  E++ IM Q++  V++P     
Sbjct: 81  YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKTL 140

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194


>gi|260774619|ref|ZP_05883531.1| transcription antitermination protein NusG [Vibrio metschnikovii
           CIP 69.14]
 gi|260610413|gb|EEX35620.1| transcription antitermination protein NusG [Vibrio metschnikovii
           CIP 69.14]
          Length = 182

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHAMEEHFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V++GPFA FNG V+  D +KSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEVGEVVRVTEGPFADFNGTVEETDYDKSRLKVSVSIFGRATPVELEFGQVEKL 181


>gi|218710885|ref|YP_002418506.1| transcription antitermination protein NusG [Vibrio splendidus
           LGP32]
 gi|218323904|emb|CAV20265.1| transcription antitermination protein NusG [Vibrio splendidus
           LGP32]
          Length = 182

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    ++ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGYEGRVSQSLREHIKMHDMEEFFGDVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P    
Sbjct: 67  GYVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 127 MFEAGEVVRVNDGPFADFNGTVEEVDYEKSRIKVSVSIFGRATPVELEFGQVEKL 181


>gi|330432328|gb|AEC17387.1| transcription antitermination protein NusG [Gallibacterium anatis
           UMN179]
          Length = 183

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 114/175 (65%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +    +   +    ++ L  E+ +P+E VV    G++  SER+FFP
Sbjct: 8   KRWYVLQAFSGFESRVATVLREYIKLHNMEELFGEVLVPTEEVVENVGGKRRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   ++P+P+++ E E I+N++E +  +P    
Sbjct: 68  GYVLVQMVMNDDTWHLVRSVPRVMGFIGGTPDHPAPISNREAEMILNRLEQSSDKPRPKT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F+ GE V V +GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK+
Sbjct: 128 MFQPGEEVRVKEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKL 182


>gi|299821040|ref|ZP_07052928.1| transcription termination/antitermination factor NusG [Listeria
           grayi DSM 20601]
 gi|299816705|gb|EFI83941.1| transcription termination/antitermination factor NusG [Listeria
           grayi DSM 20601]
          Length = 177

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMTDQIFRVIVPEEEETEVKNGKTKTLKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+ +   E E I+  +   +   
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTALLPEEAERILKSMG--MNDR 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                FEVGE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EKI
Sbjct: 119 TVEADFEVGETVMVKEGPFAEFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177


>gi|332037819|gb|EGI74269.1| transcription antitermination protein NusG [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 187

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  EK+  +++   +   GL+    EI +P+E VV +R G+K  SER+FFPG
Sbjct: 13  RWYVVQAFSGYEKRVAQTLIEHIKIEGLESSFGEILVPTEEVVEMRAGQKRKSERKFFPG 72

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++  M D  +H +  T +V+GF+G   + P+P++  E E I+N+++   + P  +  
Sbjct: 73  YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISPKEAERILNRLQENAEAPKPATL 132

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 133 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 184


>gi|261854938|ref|YP_003262221.1| NusG antitermination factor [Halothiobacillus neapolitanus c2]
 gi|261835407|gb|ACX95174.1| NusG antitermination factor [Halothiobacillus neapolitanus c2]
          Length = 177

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ +S  E    +++  R+ R GL  L  EI +PSE VV +R G K  SER+F
Sbjct: 1   MAMRWYVVQAFSQFENSVKKALEERIEREGLQSLFGEILVPSEEVVEMRDGVKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD+ +H +   P+V+GF+G +G  P+P++  E E IM +V+ +  +P  
Sbjct: 61  YPGYVLVQIDMTDEAWHLVNSVPRVLGFVGDSGGKPTPISSKEAEAIMTRVKDSTDKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              F+VGE V V DGPF  F G+V+ V+ EKSR+HV V IFGR TPVEL ++QV K
Sbjct: 121 KTLFDVGEMVRVCDGPFNDFTGVVEEVNYEKSRLHVAVSIFGRSTPVELGFDQVAK 176


>gi|320108601|ref|YP_004184191.1| NusG antitermination factor [Terriglobus saanensis SP1PR4]
 gi|319927122|gb|ADV84197.1| NusG antitermination factor [Terriglobus saanensis SP1PR4]
          Length = 209

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 118/174 (67%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+  YS  E+K  ES+  R+   GL H +  + IP+E V  VR G+K   ER F PG
Sbjct: 35  KWYIIHAYSGFERKVKESLESRIQAYGLQHKIGRVMIPTEPVTEVRNGKKYVIERVFLPG 94

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  + + ++HTIK+TP+V GFLGTG++P  +++ E+  I+ + + +  +P   V F
Sbjct: 95  YVLVEMDLDNDLWHTIKNTPRVTGFLGTGDSPVALSEQEVSSIIFRTDVSKDKPKLKVKF 154

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           E GE V ++DGPFA+FNG V +V+E+K  + V V IFGR TPVE+ +++V+KIV
Sbjct: 155 EKGEMVKITDGPFANFNGAVDDVNEDKQTLKVMVSIFGRSTPVEIEFSKVDKIV 208


>gi|33152872|ref|NP_874225.1| transcription antitermination protein NusG [Haemophilus ducreyi
           35000HP]
 gi|33149097|gb|AAP96614.1| transcription antitermination protein [Haemophilus ducreyi 35000HP]
          Length = 187

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  +ER+FFP
Sbjct: 12  MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFP 71

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+ ++  E + I+N+V+    +P    
Sbjct: 72  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAAISKREADRILNRVQETADKPRHRN 131

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +  GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EYHPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185


>gi|118579107|ref|YP_900357.1| NusG antitermination factor [Pelobacter propionicus DSM 2379]
 gi|118501817|gb|ABK98299.1| transcription antitermination protein nusG [Pelobacter propionicus
           DSM 2379]
          Length = 175

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  YS  E K   ++  R+   G++    EI IPSE VV ++KG K  S R+F
Sbjct: 1   MSKKWYGVHTYSGFENKVRLNLHERIKNEGMEEHFEEILIPSETVVELKKGEKRTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+K  + D+ +H +K+T KV GF+G G  P P+ D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVKMELNDETWHIVKETAKVTGFVG-GNTPFPIADEEVNKITRRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F+GIV++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGIVEDVKPDKGKLRVTVTIFGRATPVELEFMQVEK 174


>gi|52783957|ref|YP_089786.1| transcription antitermination protein NusG [Bacillus licheniformis
           ATCC 14580]
 gi|163119187|ref|YP_077386.2| transcription antitermination protein NusG [Bacillus licheniformis
           ATCC 14580]
 gi|52346459|gb|AAU39093.1| NusG [Bacillus licheniformis ATCC 14580]
 gi|145902690|gb|AAU21748.2| transcription antitermination factor [Bacillus licheniformis ATCC
           14580]
          Length = 177

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+ +   E E I+ ++   ++  
Sbjct: 61  FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRMG--LEER 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+
Sbjct: 119 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 177


>gi|113869449|ref|YP_727938.1| transcription antitermination protein NusG [Ralstonia eutropha H16]
 gi|113528225|emb|CAJ94570.1| transcription antitermination protein [Ralstonia eutropha H16]
          Length = 193

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+ +      I +PSE VV ++ G K  +ERRFFP
Sbjct: 19  KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E++ IM Q++  V++P    
Sbjct: 79  GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193


>gi|153009272|ref|YP_001370487.1| transcription antitermination protein NusG [Ochrobactrum anthropi
           ATCC 49188]
 gi|239832136|ref|ZP_04680465.1| transcription termination/antitermination factor NusG [Ochrobactrum
           intermedium LMG 3301]
 gi|151561160|gb|ABS14658.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
 gi|239824403|gb|EEQ95971.1| transcription termination/antitermination factor NusG [Ochrobactrum
           intermedium LMG 3301]
          Length = 175

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL  L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSELIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD V+  IK+TPKV GFLG    P PV+  E++ I+NQV+  V+RP +S
Sbjct: 61  FPGYVLVRATLTDAVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175


>gi|322418352|ref|YP_004197575.1| NusG antitermination factor [Geobacter sp. M18]
 gi|320124739|gb|ADW12299.1| NusG antitermination factor [Geobacter sp. M18]
          Length = 175

 Score =  173 bits (438), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY V  YS  E K   S+  R+    ++    EI IP E VV ++KG K  S R+F
Sbjct: 1   MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + D  +H +K+T KV GF+G G NP P+ D E+  I  ++E   ++P   
Sbjct: 61  FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDEEVNKITKRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPF +F+G+V++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174


>gi|73542878|ref|YP_297398.1| transcription antitermination protein NusG [Ralstonia eutropha
           JMP134]
 gi|72120291|gb|AAZ62554.1| transcription antitermination protein nusG [Ralstonia eutropha
           JMP134]
          Length = 193

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+ +      I +PSE VV ++ G K  +ERRFFP
Sbjct: 19  KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E++ IM Q++  V++P    
Sbjct: 79  GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193


>gi|119468180|ref|ZP_01611306.1| component in transcription antitermination; couples translation and
           transcription [Alteromonadales bacterium TW-7]
 gi|119448173|gb|EAW29437.1| component in transcription antitermination; couples translation and
           transcription [Alteromonadales bacterium TW-7]
          Length = 185

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  EK+  +++   +   GL+    EI +P+E VV +R G+K  SER+FFPG
Sbjct: 11  RWYVVQAFSGYEKRVAQTLTEHIKIEGLEESFGEILVPTEEVVEMRAGQKRKSERKFFPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++  M D  +H +  T +V+GF+G   + P+P++  E + I+N+++   + P  +  
Sbjct: 71  YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182


>gi|229815830|ref|ZP_04446154.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM
           13280]
 gi|229808525|gb|EEP44303.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM
           13280]
          Length = 179

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+ RWY+V  YS  E +    +  R+   G+   + +I IP+E V  +++G ++   + +
Sbjct: 1   MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTEHVTELKEGGKRDEKDVK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  M D  +  +++TP V GFLG    P+P++  E   +M + +     P  
Sbjct: 61  IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGSSAPKR 120

Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +V   EVG  + V++GP A F+G V  V  E+ +V V ++IFGR TPVEL + Q+E
Sbjct: 121 AVVDIEVGTSIRVTNGPLADFDGKVSEVMPEQGKVKVTLLIFGRETPVELGFEQIE 176


>gi|16272657|ref|NP_438875.1| transcription antitermination protein NusG [Haemophilus influenzae
           Rd KW20]
 gi|1171875|sp|P43916|NUSG_HAEIN RecName: Full=Transcription antitermination protein nusG
 gi|1573719|gb|AAC22374.1| transcription antitermination protein (nusG) [Haemophilus
           influenzae Rd KW20]
          Length = 185

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   + +  ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 10  KRWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++  E + I+N++E    +P    
Sbjct: 70  GYVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRN 129

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +  GE V V++GPFA FNG V+ VD EK R+ V V +FGR TPVEL + QVEKI
Sbjct: 130 EYHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSMFGRATPVELEFGQVEKI 184


>gi|258543809|ref|ZP_05704043.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258520938|gb|EEV89797.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 178

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY++Q YS  E +   ++  R+ R GL     +I IPSE VV ++ G+K NS+R+F
Sbjct: 1   MSKQWYVLQTYSQFEGQVKRALMERIEREGLQDSFGQILIPSEEVVEIKDGKKRNSQRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-SEIEHIMNQVEAAVQRPVS 119
           FP YVL++  M D  +H ++  P+V GF+G            E+E I+ ++E  +++P  
Sbjct: 61  FPNYVLVEMEMNDTTWHVVRSIPRVSGFVGGTAESPAPIPAHEVEAILRRIEEGIEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FEVGE V + DGPFA F G V+ V  EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 KTLFEVGEEVRIIDGPFAEFMGTVEEVMYEKSRLKVSVLIFGRPTPVELEFHQVEK 176


>gi|269796269|ref|YP_003315724.1| transcription antitermination protein nusG [Sanguibacter keddieii
           DSM 10542]
 gi|269098454|gb|ACZ22890.1| transcription antitermination protein nusG [Sanguibacter keddieii
           DSM 10542]
          Length = 273

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + +I +P E V  ++  +K    R   PGY
Sbjct: 93  WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKIVRRVRIPGY 152

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
           VL++  +TD+ +  ++ TP V GF+G    P P+T +E+  ++  + A            
Sbjct: 153 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTQNEVFGMLAPLIAPKAEAGAKGSGS 212

Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P   V F VGE V V+DGPF +    +  ++ E  ++ V V IFGR TPVEL+++QV K
Sbjct: 213 APAIEVDFTVGESVTVTDGPFDTLPATISEINAEGQKLKVLVSIFGRETPVELSFSQVAK 272

Query: 176 I 176
           I
Sbjct: 273 I 273


>gi|170718763|ref|YP_001783416.1| transcription antitermination protein NusG [Haemophilus somnus
           2336]
 gi|168826892|gb|ACA32263.1| NusG antitermination factor [Haemophilus somnus 2336]
          Length = 184

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER++FP
Sbjct: 8   KRWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +  ++  P+V+GF+G   + P+P++  E E I+N+V+    +P    
Sbjct: 68  GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRK 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181


>gi|113460339|ref|YP_718400.1| transcription antitermination protein NusG [Haemophilus somnus
           129PT]
 gi|112822382|gb|ABI24471.1| transcription antitermination protein nusG [Haemophilus somnus
           129PT]
          Length = 184

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  SER++FP
Sbjct: 8   KRWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +  ++  P+V+GF+G   + P+P++  E E I+N+V+    +P    
Sbjct: 68  GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRK 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK
Sbjct: 128 EFQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181


>gi|159042815|ref|YP_001531609.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12]
 gi|157910575|gb|ABV92008.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12]
          Length = 177

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIKHAVAEAGLEDDIEEVLVPTEEVIEVRRGKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++  MTD+ YH I    +V GFLG    P  + D E+  I+N+VE   + P S 
Sbjct: 61  MPGYVLVRMEMTDQGYHLINSINRVTGFLGPQGRPMAMRDDEVNQILNRVEEGQEAPRSL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F++GE+V V+DGPF  F+G V+ VD++ +R+ V V IFGR TPVEL + QV K
Sbjct: 121 ITFDIGEQVNVTDGPFEGFSGSVEEVDDDNNRLKVTVSIFGRATPVELEFTQVTK 175


>gi|256827385|ref|YP_003151344.1| transcription antitermination protein nusG [Cryptobacterium curtum
           DSM 15641]
 gi|256583528|gb|ACU94662.1| transcription antitermination protein nusG [Cryptobacterium curtum
           DSM 15641]
          Length = 178

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 108/178 (60%), Gaps = 2/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M  +WY++  YS  E K  +++  R+   GL++ V +I IP E V  ++ G R+V S+++
Sbjct: 1   MAKKWYVLHTYSGYENKVKKNLESRIETMGLENNVFDIQIPMETVTEIKDGGRRVESDKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPV 118
             PGYVL++  + D+ +  +++TP V GF+G+  NP+P+T  E   IM +   A  ++ V
Sbjct: 61  VLPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQANPAPLTREEYNKIMKRTDHADTRKAV 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +     G+ V V  GP A F+G+V  V  E ++V V V IFGR TPVEL+++QV ++
Sbjct: 121 VTSDLAEGQTVKVVSGPLADFDGVVSEVSPEANKVKVLVSIFGRETPVELSFDQVTRL 178


>gi|154684619|ref|YP_001419780.1| transcription antitermination protein NusG [Bacillus
           amyloliquefaciens FZB42]
 gi|154350470|gb|ABS72549.1| NusG [Bacillus amyloliquefaciens FZB42]
          Length = 177

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E E I+ ++    ++ 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRMGMDERK- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 120 -TDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177


>gi|302390620|ref|YP_003826441.1| transcription antitermination protein nusG [Thermosediminibacter
           oceani DSM 16646]
 gi|302201248|gb|ADL08818.1| transcription antitermination protein nusG [Thermosediminibacter
           oceani DSM 16646]
          Length = 174

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++  YS  E K   ++  R+   G+   +  + +P E  V ++ G+K  ++R+ 
Sbjct: 1   MSKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRVLVPVEEEVEIKNGKKKVTQRKI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ ++TD  +H +++TP V GF+GTG  P P+ +SEI+ I+ Q+   ++ P   
Sbjct: 61  FPGYVLVEMIVTDDSWHVVRNTPGVTGFVGTGNKPIPLQESEIKAILKQMG--IEEPKPK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  +V + V V  GPF +F G V  ++ EK +V V + +FGR TP+EL +NQVEKI
Sbjct: 119 LDIDVDQNVKVVSGPFENFVGKVLEINHEKQKVKVLISMFGRETPIELDFNQVEKI 174


>gi|295106904|emb|CBL04447.1| transcription antitermination protein nusG [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 180

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 4/180 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+ +WY++  YS  E K  +++  R+   GL++ V  I IP+E V  +++G R+V SE++
Sbjct: 1   MSKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFAIEIPTEMVTEIKEGGRRVESEKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  + D+ +  +++TP V GF+G+  NP+P+T  E   IM       +    
Sbjct: 61  VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQGNPAPLTRDEYNKIMGMRSDKNRPGTP 120

Query: 120 SV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                  EVG+ V V  GP A F+G+V  V  +  +V V V IFGR TPVEL+++Q+ KI
Sbjct: 121 KKTSSSIEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVLVSIFGRETPVELSFDQIAKI 180


>gi|118594012|ref|ZP_01551359.1| transcription antitermination protein NusG [Methylophilales
           bacterium HTCC2181]
 gi|118439790|gb|EAV46417.1| transcription antitermination protein NusG [Methylophilales
           bacterium HTCC2181]
          Length = 178

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY VQ YS  EK   +S+  R+ ++ L     EI +P E VV ++ G K  SERR 
Sbjct: 1   MSKRWYAVQAYSGYEKIVQKSLLERIDQAKLSDQFGEILVPVEEVVEMKGGNKTLSERRL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H ++ TPKV  F+G   + P+P+ D E++ I+ +++ +   P  
Sbjct: 61  YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSAQKPTPIKDKEVDIILQRMDDSKVNPTQ 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            + FEVGE V V DGPF  F+G V+ ++ EKS++ V VVIFGR TPVEL + Q+EK V
Sbjct: 121 KMTFEVGESVRVLDGPFKDFSGSVEEINYEKSKLRVSVVIFGRATPVELEFGQIEKEV 178


>gi|302382912|ref|YP_003818735.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193540|gb|ADL01112.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
          Length = 193

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/175 (53%), Positives = 125/175 (71%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  + I  +  +  L+   +EI +P+E VV +R+GRKVNSER+FFP
Sbjct: 16  HKWYIVHAYSNFEKKVAQHIRDQAKQRDLEECFSEILVPTEDVVEIRRGRKVNSERKFFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           GYVL+K  +TD  YH +KDTPKV GFLG   G  P PV++ E++ I+  VE  V+RP  +
Sbjct: 76  GYVLVKMELTDDAYHLVKDTPKVTGFLGAAGGTKPLPVSEREVQAIIGAVEEGVERPKPT 135

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F++GE V V DGPFASF+G V++VDE+ +R+ V V IFGR TPV+L Y+QVEK
Sbjct: 136 IRFDIGETVKVIDGPFASFDGQVESVDEDAARLRVAVSIFGRPTPVDLEYSQVEK 190


>gi|110833234|ref|YP_692093.1| transcription antitermination protein NusG [Alcanivorax borkumensis
           SK2]
 gi|110646345|emb|CAL15821.1| transcription antitermination protein NusG [Alcanivorax borkumensis
           SK2]
          Length = 180

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 4/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK    ++  R+    ++ L   I +P+E VV ++ G+K  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKYVKRALEERVKLRSMEELFGGILVPTEEVVEIKGGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAAVQR 116
           FPGYVL++  M D  +H IK+TPKV+GF+G         SP+T  E + I+ +++ AV++
Sbjct: 61  FPGYVLVQMEMCDDSWHLIKETPKVMGFIGEDSKNPGRVSPITQKEADAILRRMDDAVEK 120

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           P     FE GE V V+DGPFA FNG+++ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 PKPKTLFEAGEVVRVNDGPFADFNGVIEEVNYEKSRLQVAVMIFGRSTPVELEFGQVEK 179


>gi|91791527|ref|YP_561178.1| transcription termination/antitermination factor NusG [Shewanella
           denitrificans OS217]
 gi|91713529|gb|ABE53455.1| transcription antitermination protein nusG [Shewanella
           denitrificans OS217]
          Length = 183

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +++   +    ++    EI +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVIQAFSGYEGRVSKTLLEHIKMHNMEDYFGEILVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++D E + I+ +++  V+ P   +
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRI 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE V V DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++QVEK
Sbjct: 129 IYEPGEVVRVCDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFHQVEK 182


>gi|114764160|ref|ZP_01443398.1| transcription termination/antitermination factor NusG [Pelagibaca
           bermudensis HTCC2601]
 gi|114543312|gb|EAU46328.1| transcription termination/antitermination factor NusG [Roseovarius
           sp. HTCC2601]
          Length = 177

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +   GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH +    +V GFLG    P P+ D+E+E I+ +V+ + + P + 
Sbjct: 61  MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVESILGRVQESDEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G++++VD++  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMIESVDDDNQRLRVAVSIFGRETPVELEFTQVSK 175


>gi|114561324|ref|YP_748837.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400]
 gi|114332617|gb|ABI69999.1| transcription antitermination protein nusG [Shewanella
           frigidimarina NCIMB 400]
          Length = 183

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E + ++++   +    ++    EI +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVIQAFSGYEGRVLKTLLEHIKMHNMEEYFGEILVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++D E + I+ +++  V+ P   +
Sbjct: 69  GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRI 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE V V DGPFA FNG ++ VD EK+R+ V V+IFGR TPVEL +NQVEK
Sbjct: 129 MYEPGEVVRVCDGPFADFNGTIEEVDYEKNRIKVSVMIFGRSTPVELDFNQVEK 182


>gi|77359188|ref|YP_338763.1| transcription antitermination factor [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874099|emb|CAI85320.1| component in transcription antitermination; couples translation and
           transcription [Pseudoalteromonas haloplanktis TAC125]
          Length = 185

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/172 (46%), Positives = 116/172 (67%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  EK+  ++I   +   GL+    E+ +P+E V+ +R G+K  SER+FFPG
Sbjct: 11  RWYVVQAFSGYEKRVAQTILEHIKIKGLEESFGEVLVPTEEVIEMRAGQKRKSERKFFPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVLI+  M DK +H +  T +V+GF+G   + P+P++  E E I+N+++   + P  +  
Sbjct: 71  YVLIQMDMNDKSWHLVNSTERVMGFIGGTSDRPAPISAKEAERILNRLQENAEAPKPATL 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182


>gi|156744234|ref|YP_001434363.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941]
 gi|156235562|gb|ABU60345.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941]
          Length = 194

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  +++  R+    +   +  + +P+E  + ++ G++   +++ FPG
Sbjct: 22  RWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFPG 81

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  M D  ++ +++TP V  F+G G  P+P+ + E++ I+ Q+E   + P   V +
Sbjct: 82  YVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEEEEVKAILKQMEQ--EAPKVKVSY 139

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +VG+ V ++DGPF  F GIV  +D E+ RV V V  FGR  PVEL + QV ++V
Sbjct: 140 QVGQAVKITDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193


>gi|257063593|ref|YP_003143265.1| transcription antitermination protein nusG [Slackia
           heliotrinireducens DSM 20476]
 gi|256791246|gb|ACV21916.1| transcription antitermination protein nusG [Slackia
           heliotrinireducens DSM 20476]
          Length = 178

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M  +WY++  YS  E K  +++  R+   GL+  + +I IP+E V  +++G R+V SE++
Sbjct: 1   MAKKWYVLHTYSGYENKVKQTLESRVEMMGLEDSIVDIQIPTEMVTEIKEGGRRVESEKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  M ++ +  +++TP V GF+G    P P+T  E   IM +       P  
Sbjct: 61  VFPGYVLVRMEMNNQNWSVVRNTPGVTGFVGGQGEPEPLTREEYNKIMKRTSVKAGAPKK 120

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            S   EVG+ V V+ GP A F+G V  V  E  +V V V IFGR TPVEL+++QV +I
Sbjct: 121 TSTSLEVGQSVKVTSGPLADFDGTVSEVSPEAGKVKVLVSIFGRETPVELSFDQVARI 178


>gi|89100743|ref|ZP_01173598.1| transcription antitermination protein NusG [Bacillus sp. NRRL
           B-14911]
 gi|89084560|gb|EAR63706.1| transcription antitermination protein NusG [Bacillus sp. NRRL
           B-14911]
          Length = 177

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+    +   +  + +P E    ++ G+K   +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVETMAMQDKIFRVIVPEEEETDIKNGKKKVVKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E+  I+ ++   V   
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVNVILKRMG--VDEK 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + FE+GE V V++GPFA+F G ++ +D++K+++ V V +FGR TPVEL + Q+EK+
Sbjct: 119 RVDIDFEIGETVKVNEGPFANFTGSIEEIDKDKAKIKVLVNMFGRETPVELDFTQIEKL 177


>gi|94312270|ref|YP_585480.1| transcription antitermination protein NusG [Cupriavidus
           metallidurans CH34]
 gi|93356122|gb|ABF10211.1| transcription termination factor [Cupriavidus metallidurans CH34]
          Length = 193

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+ +      I +PSE VV ++ G K  +ERRFFP
Sbjct: 19  KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G     PSP++  E++ IM Q++  V++P    
Sbjct: 79  GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 193


>gi|126734758|ref|ZP_01750504.1| transcription antitermination protein NusG [Roseobacter sp. CCS2]
 gi|126715313|gb|EBA12178.1| transcription antitermination protein NusG [Roseobacter sp. CCS2]
          Length = 176

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 112/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E+I  +    GL   + E+ +P+E V+ +R+ +KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEAIRQKADEQGLSDQIDEVLVPTEEVIEIRRNKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +V+     P + 
Sbjct: 61  MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VD+E  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRATPVELEFTQVSK 175


>gi|261417593|ref|YP_003251275.1| transcription antitermination protein NusG [Geobacillus sp.
           Y412MC61]
 gi|297528468|ref|YP_003669743.1| NusG antitermination factor [Geobacillus sp. C56-T3]
 gi|319765251|ref|YP_004130752.1| NusG antitermination factor [Geobacillus sp. Y412MC52]
 gi|261374050|gb|ACX76793.1| NusG antitermination factor [Geobacillus sp. Y412MC61]
 gi|297251720|gb|ADI25166.1| NusG antitermination factor [Geobacillus sp. C56-T3]
 gi|317110117|gb|ADU92609.1| NusG antitermination factor [Geobacillus sp. Y412MC52]
          Length = 177

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G++  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDVKNGKRKTTKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+ + E++ I+ ++   +   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRMGMPLAEV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177


>gi|328551802|gb|AEB22294.1| transcription antitermination protein NusG [Bacillus
           amyloliquefaciens TA208]
          Length = 177

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E E I+ ++    ++ 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRMGMDERK- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPF +F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 120 -TDIDFELNETVKVIDGPFTNFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177


>gi|30249991|ref|NP_842061.1| transcription antitermination protein NusG [Nitrosomonas europaea
           ATCC 19718]
 gi|30139098|emb|CAD85962.1| nusG; Bacterial transcription antitermination [Nitrosomonas
           europaea ATCC 19718]
          Length = 177

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  YS  EK    ++  R+++  L+    EI IP E V+ ++ G+K  SER+F
Sbjct: 1   MSKKWYAVHTYSGFEKSVKRALKDRIAQHKLEDKFGEILIPVEEVIEIKGGQKSISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FP Y+LI+  MTD+ +H +K TPKV GF+G     P P++  EIE I NQV   V++P  
Sbjct: 61  FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSTQPVPISHKEIESIFNQVREGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FE GE V + +GPF  F+G V+ V+ +KS++ V V IFGR TPVEL ++QV+K+
Sbjct: 121 KVIFEAGEAVRIKEGPFTDFHGNVEEVNYDKSKLQVSVSIFGRPTPVELDFHQVDKV 177


>gi|325577261|ref|ZP_08147745.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
 gi|301154974|emb|CBW14437.1| transcription termination factor [Haemophilus parainfluenzae T3T1]
 gi|325160843|gb|EGC72964.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 185

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 111/174 (63%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   + +  ++    E+ +P+E VV    G++  SER+FFP
Sbjct: 10  KRWYVLQAFSGFESRVAITLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++  E + I+N++E + ++P    
Sbjct: 70  GYVLVEMAMNDDTWHLVKSVPRVMGFIGGTPDKPAPISKREADLILNRLEQSAEKPRHRK 129

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            ++ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 130 EYQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 183


>gi|319649130|ref|ZP_08003338.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2]
 gi|317388830|gb|EFV69649.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2]
          Length = 179

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 3   MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 62

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+ +   E E I+ ++   ++  
Sbjct: 63  FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRMG--LEER 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+
Sbjct: 121 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 179


>gi|224827266|ref|ZP_03700360.1| NusG antitermination factor [Lutiella nitroferrum 2002]
 gi|224600555|gb|EEG06744.1| NusG antitermination factor [Lutiella nitroferrum 2002]
          Length = 177

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/177 (49%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  EK   +++  R+ RS +  L  ++ +P E VV V+ GRK  SER+F
Sbjct: 1   MAKRWYVVHAYSGFEKSVQKALRERIERSEVADLFGQVLVPVEEVVDVKNGRKSISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MTD+ +H +K TPKV GF+G     P+P++  E+E IM Q++  V++P  
Sbjct: 61  FPGYVLVEMEMTDETWHLVKSTPKVTGFVGGTANRPAPISKKEVESIMQQMQEGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVGERV V DGPF  FNG V  V+ E++++ V V IFGR TPVEL +NQVEK+
Sbjct: 121 KVLFEVGERVRVIDGPFNDFNGSVDEVNYERNKIRVSVQIFGRETPVELDFNQVEKL 177


>gi|210632466|ref|ZP_03297394.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279]
 gi|210159561|gb|EEA90532.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279]
          Length = 179

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 2/175 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+ RWY+V  YS  E +    +  R+   G+   + +I IP+ERV  +++G ++   + +
Sbjct: 1   MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTERVTELKEGGKRDEKDVK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  M D  +  +++TP V GFLG    P+P++  E   +M + +     P  
Sbjct: 61  IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGGAAPKR 120

Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           +V   EVG  V V  GP + F+G V  V  E ++V V ++IFGR TPVEL+++Q+
Sbjct: 121 AVVDIEVGTSVRVISGPLSDFDGKVSEVMPEAAKVKVTLMIFGRETPVELSFDQI 175


>gi|254714313|ref|ZP_05176124.1| transcription antitermination protein NusG [Brucella ceti
           M644/93/1]
 gi|254717750|ref|ZP_05179561.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
 gi|261219594|ref|ZP_05933875.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
 gi|261322089|ref|ZP_05961286.1| transcription antitermination protein NusG [Brucella ceti
           M644/93/1]
 gi|260924683|gb|EEX91251.1| transcription antitermination protein NusG [Brucella ceti M13/05/1]
 gi|261294779|gb|EEX98275.1| transcription antitermination protein NusG [Brucella ceti
           M644/93/1]
          Length = 175

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL  L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L++A +TD V+  IK+TPKV GFLG    P PV+  E++ I+NQV+  V+RP +S
Sbjct: 61  FPGYLLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+
Sbjct: 120 VSFEIGENVSVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175


>gi|49474312|ref|YP_032354.1| transcription antitermination protein NusG [Bartonella quintana
           str. Toulouse]
 gi|49239816|emb|CAF26207.1| Transcription antitermination protein [Bartonella quintana str.
           Toulouse]
          Length = 176

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/176 (60%), Positives = 136/176 (77%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1   MAARWYIVQAYSNFEKKIAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+ A +TD+VYH IK+TPKV GFLG+   P P++D E E I+ QV+  V+ P SS
Sbjct: 61  FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPIPISDREAEQILKQVQEGVESPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176


>gi|256061327|ref|ZP_05451475.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
 gi|261325332|ref|ZP_05964529.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
 gi|261301312|gb|EEY04809.1| transcription antitermination protein NusG [Brucella neotomae 5K33]
          Length = 175

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL  L+ +I +P+E++V VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD V+  IK+TPKV GFLG    P PV+  E++ I+NQV+  V+RP +S
Sbjct: 61  FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TP++L Y QV+K+
Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPIDLEYGQVDKL 175


>gi|254420959|ref|ZP_05034683.1| transcription termination/antitermination factor NusG
           [Brevundimonas sp. BAL3]
 gi|196187136|gb|EDX82112.1| transcription termination/antitermination factor NusG
           [Brevundimonas sp. BAL3]
          Length = 191

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/176 (55%), Positives = 131/176 (74%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIV  YSN EKK  E +  +  + GL+   +EI +P+E VV +R+GRKVNSER+FFP
Sbjct: 14  HKWYIVNAYSNFEKKVAEQVRDQAKQQGLEDAFSEILVPTEDVVEIRRGRKVNSERKFFP 73

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           GYVL+K  MTD+ YH +K+TPKV GFLG   G  P PV++ E+++I+ QVE  V+RP  +
Sbjct: 74  GYVLVKMEMTDQAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPT 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F++GE+V V DGPFASF+G V++VDEE++R+ V V IFGR TPVEL Y QVEK+
Sbjct: 134 IRFDIGEKVKVIDGPFASFDGSVESVDEEQARLRVAVSIFGRATPVELEYAQVEKV 189


>gi|119478595|ref|ZP_01618517.1| transcription antitermination protein NusG [marine gamma
           proteobacterium HTCC2143]
 gi|119448430|gb|EAW29680.1| transcription antitermination protein NusG [marine gamma
           proteobacterium HTCC2143]
          Length = 176

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 115/176 (65%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EKK    +  R+    +     ++ +P+E VV +R G+K  SER+F
Sbjct: 1   MSKRWYVVHAYSGYEKKVANMLKERIELHKMQEKFGDVLVPTEEVVEMRGGQKRRSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + D  +H +K+TP+V+GF+G   + P+P+T++E   I+ +V  + + P  
Sbjct: 61  FPGYVLVEMELGDDTWHLVKETPRVLGFIGGKADKPAPITEAEANTILQRV-ESGEAPKP 119

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V+ V+ EKS++HV V+IFGR TPVEL + QVEK
Sbjct: 120 KTLFEPGEMVRVVDGPFNDFNGVVEEVNYEKSKLHVAVLIFGRSTPVELDFGQVEK 175


>gi|146329117|ref|YP_001210163.1| transcription termination-antitermination factor NusG
           [Dichelobacter nodosus VCS1703A]
 gi|146232587|gb|ABQ13565.1| transcription termination-antitermination factor NusG
           [Dichelobacter nodosus VCS1703A]
          Length = 178

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 110/176 (62%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++Q YS  E+    ++  R+ R GL     EI IP+E VV ++  +K  S+ +F
Sbjct: 1   MAKQWYVLQSYSQFEQYVKRALQERIEREGLQDSFGEILIPTEEVVEIKDNKKRISQHKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP-VTDSEIEHIMNQVEAAVQRPVS 119
           +PGYV ++  M D  +H +   PKV GF+G  +     ++  E++ I+N+++  V++P  
Sbjct: 61  YPGYVFVEMEMNDTTWHVVNSIPKVSGFVGGTKESPAAISQEEVDKILNRMQEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE+GE + + DGPFA F G V+ V+ EKSR+ V V+IFGR TPVEL +NQVEK
Sbjct: 121 KTLFEIGEELRIIDGPFADFTGTVEEVNYEKSRLKVSVLIFGRPTPVELEFNQVEK 176


>gi|307251013|ref|ZP_07532938.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856953|gb|EFM89084.1| Transcription antitermination protein nusG [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 187

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    GR+  +ER+FFP
Sbjct: 12  MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 71

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++  E + I+N+V+   ++P    
Sbjct: 72  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 131

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK
Sbjct: 132 EFQPGENVHVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185


>gi|262273344|ref|ZP_06051159.1| transcription antitermination protein NusG [Grimontia hollisae CIP
           101886]
 gi|262222717|gb|EEY74027.1| transcription antitermination protein NusG [Grimontia hollisae CIP
           101886]
          Length = 181

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAKSLKEHIKMHEMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P++D E + I+N++E A + PV   
Sbjct: 67  GYVLVQMLMNDESWHLVRSVPRVMGFIGGTPDRPAPISDKEADAILNRLEKASESPVHKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 VYEAGEVVRVTEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEK 180


>gi|237654008|ref|YP_002890322.1| transcription antitermination protein NusG [Thauera sp. MZ1T]
 gi|237625255|gb|ACR01945.1| NusG antitermination factor [Thauera sp. MZ1T]
          Length = 177

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK    ++  R++RSG+     +I +P E V+ +R G+K  +ER+F
Sbjct: 1   MSKRWYVVHAYSGFEKSVQRALIDRVNRSGMQDSFGQILVPVEEVIEMRGGQKTVTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D+ +H +K TPKV GF+G     P+P+++ E+E IM Q++  V +P  
Sbjct: 61  FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPAPISEKEVEKIMQQMQEGVDKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE+GE V V +GPF  F+G V++ + EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEIGEVVRVKEGPFTDFHGSVEDANYEKNKLRVSVTIFGRATPVELDFAQVEK 176


>gi|167626051|ref|YP_001676345.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4]
 gi|167356073|gb|ABZ78686.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4]
          Length = 183

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +++   +    ++    E+ +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVIQAFSGYEGRVCKTLLEHIRMHEMEAYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E + I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182


>gi|297582435|ref|YP_003698215.1| NusG antitermination factor [Bacillus selenitireducens MLS10]
 gi|297140892|gb|ADH97649.1| NusG antitermination factor [Bacillus selenitireducens MLS10]
          Length = 177

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+    +   +  I +P E    V+ G+     ++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKTNLEKRVESMEMTDKIFRILVPVEEENEVKNGKSKVVTKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYV+++ VMTD  ++ +++TP V GF+G+   G  P+ +   E + I+ Q+   V+ P
Sbjct: 61  FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALLPDEADAILRQMG--VEAP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + V F++ E V V +GPFA+F G ++++  EK ++ V V +FGR TPVEL ++QVEKI
Sbjct: 119 KAEVDFDLKESVKVKEGPFANFIGSIEDISAEKRKLKVHVNMFGRETPVELDFHQVEKI 177


>gi|297618398|ref|YP_003703557.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146235|gb|ADI02992.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
          Length = 195

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+V  YS  E K   ++  R++   +++ + ++ IP E  V  + G+K  +++R F
Sbjct: 23  ERRWYVVHTYSGYENKVKANLEKRVASMNMENQIFQVLIPEEDEVEYKGGQKKVTKKRIF 82

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ +MTD  + T++ TP V GF+G+G  P P+   E++ I+  +     +P   +
Sbjct: 83  PGYVLVEMIMTDDSWVTVRHTPGVTGFVGSGTKPIPLQPHEVQKILKHMGMLETKP--KI 140

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             EVGE V V  GPF +F G+VK +  ++ ++ V + +FGR TPVEL Y QVEK+
Sbjct: 141 DVEVGEYVRVKSGPFENFEGMVKEILADRGKLRVNISMFGRETPVELDYEQVEKL 195


>gi|163868084|ref|YP_001609288.1| transcription antitermination protein NusG [Bartonella tribocorum
           CIP 105476]
 gi|161017735|emb|CAK01293.1| transcription antitermination protein [Bartonella tribocorum CIP
           105476]
          Length = 176

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/176 (59%), Positives = 138/176 (78%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1   MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+VYH IK+TPKV GFLG+   P P++D E++ I+ QV+  V+ P SS
Sbjct: 61  FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVDQILKQVQEGVESPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176


>gi|300114748|ref|YP_003761323.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
 gi|300114760|ref|YP_003761335.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
 gi|299540685|gb|ADJ29002.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
 gi|299540697|gb|ADJ29014.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
          Length = 177

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ +S  E++   S+  R+ R GL     +I +P+E VV +R+G+K  SER+F
Sbjct: 1   MAKRWYVVQAFSGFEQQVKRSMEERVRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D+ +H +KD P+V+GF+G   + P+P+T++E E I+ ++    ++P  
Sbjct: 61  FPGYVLVQMEMDDETWHLVKDVPRVLGFIGGTSDKPAPITEAEAEKILERIREGAEQPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE GE V V++GPF  FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEMVRVTEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176


>gi|71905949|ref|YP_283536.1| transcription antitermination protein NusG [Dechloromonas aromatica
           RCB]
 gi|71845570|gb|AAZ45066.1| transcription antitermination protein nusG [Dechloromonas aromatica
           RCB]
          Length = 177

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+V  YS  EK  + +I  R++R G++     I +P E VV ++ G+K  SER+F
Sbjct: 1   MSKRWYVVHAYSGFEKSVMRAIQERITRLGMEEKFGRILVPVEEVVEMKGGQKAISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL +  M D  +H +K+TPKV GF+G     P+P+++ E+E IM Q++  V++P  
Sbjct: 61  FPGYVLCEMEMDDDSWHLVKNTPKVTGFVGGTATKPTPISEKEVEKIMQQMQEGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V +GPF  F+G V++V+ EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGEVVRVKEGPFTDFHGSVEDVNYEKNRLRVSVTIFGRATPVELEFAQVEK 176


>gi|332108098|gb|EGJ09322.1| transcription antitermination protein NusG [Rubrivivax
           benzoatilyticus JA2]
          Length = 193

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ R+G+      I +P+E VV ++ G+K  +ERRFFP
Sbjct: 19  KRWYVVHAYSGMEKAVERNLRERIDRAGMQDKFGRILVPTEEVVELKNGKKAVTERRFFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K T KV GF+G     P+P++++E+  I+NQ++  V +P   V
Sbjct: 79  GYVLVEMEMADDTWHLVKHTSKVTGFVGGARNRPAPISEAEVMKIVNQMQEGVDKPRPKV 138

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + VGE V V +GPF  FNG V+ V+ EKS+V V V IFGR T VEL ++QVEK+
Sbjct: 139 EWTVGEMVRVKEGPFTDFNGAVEEVNYEKSKVKVSVTIFGRATGVELDFSQVEKV 193


>gi|17547758|ref|NP_521160.1| transcription antitermination protein NusG [Ralstonia solanacearum
           GMI1000]
 gi|83749362|ref|ZP_00946358.1| NusG [Ralstonia solanacearum UW551]
 gi|207721923|ref|YP_002252361.1| transcription antitermination protein [Ralstonia solanacearum
           MolK2]
 gi|207744563|ref|YP_002260955.1| transcription antitermination protein [Ralstonia solanacearum
           IPO1609]
 gi|17430063|emb|CAD16748.1| probable transcription antitermination protein [Ralstonia
           solanacearum GMI1000]
 gi|83723987|gb|EAP71169.1| NusG [Ralstonia solanacearum UW551]
 gi|206587093|emb|CAQ17677.1| transcription antitermination protein [Ralstonia solanacearum
           MolK2]
 gi|206595969|emb|CAQ62896.1| transcription antitermination protein [Ralstonia solanacearum
           IPO1609]
          Length = 194

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    S+  R+ R+GL H+   I +PSE VV ++ G K  +ERRFFP
Sbjct: 20  KRWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G  G  P+P++  E++ IM Q++  V++P    
Sbjct: 80  GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKT 139

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194


>gi|56698338|ref|YP_168711.1| transcription termination/antitermination factor NusG [Ruegeria
           pomeroyi DSS-3]
 gi|56680075|gb|AAV96741.1| transcription termination/antitermination factor NusG [Ruegeria
           pomeroyi DSS-3]
          Length = 177

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ VR+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKVAEQIRASVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDQGYHLINTINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GERV V+DGPF  F+G+V+ VD++  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEIGERVKVNDGPFEGFDGMVEGVDDDSQKLRVSVSIFGRETPVELDFTQVAK 175


>gi|119899718|ref|YP_934931.1| transcription antitermination protein NusG [Azoarcus sp. BH72]
 gi|119672131|emb|CAL96045.1| putative transcription antitermination protein [Azoarcus sp. BH72]
          Length = 179

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWY+V  YS  EK    ++  R++R+G+     +I +P E VV ++ G+K  SER+F
Sbjct: 3   MTKRWYVVHAYSGFEKSVQRALVDRINRAGMQDAFGQILVPVEEVVEMKGGQKSISERKF 62

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D+ +H +K TPKV GF+G     P+P+++ E+E IM Q++  V +P  
Sbjct: 63  FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPTPISEKEVEKIMQQMQEGVDKPRP 122

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE GE V V +GPF  F+G V++V+ EKS++ V V IFGR TPVEL + QVEK
Sbjct: 123 KVLFETGEVVRVKEGPFTDFHGSVEDVNYEKSKLRVSVTIFGRATPVELDFAQVEK 178


>gi|295694823|ref|YP_003588061.1| NusG antitermination factor [Bacillus tusciae DSM 2912]
 gi|295410425|gb|ADG04917.1| NusG antitermination factor [Bacillus tusciae DSM 2912]
          Length = 180

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+V  YS  E K   ++  R+    ++  +  + +P+E  +  + G+K    ++ F
Sbjct: 5   EKRWYVVHTYSGFENKVKTNLEKRVLSMNMEDKIFRVLVPTEEEIETKNGKKRAVMKKVF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P P+  +E+  I+ Q+   +  P 
Sbjct: 65  PGYVLVEMIMTDDSWYVVRNTPGVTGFVGSTGAGSKPIPLHPAEVRAILKQMG--MDEPK 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V   V + V V +GPFA F G ++ V  EK +V V V +FGR TP+EL ++QVEKI
Sbjct: 123 ERVDLHVRDAVRVVEGPFADFVGSIEEVYPEKQKVRVLVSMFGRDTPLELEFSQVEKI 180


>gi|110681150|ref|YP_684157.1| transcription antitermination protein NusG [Roseobacter
           denitrificans OCh 114]
 gi|109457266|gb|ABG33471.1| transcription antitermination protein NusG [Roseobacter
           denitrificans OCh 114]
          Length = 191

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 114/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 15  MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 74

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+DK YH +    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 75  MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+++ VD+E  R+ V V IFGR TPVEL + QV K
Sbjct: 135 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 189


>gi|157960002|ref|YP_001500036.1| NusG antitermination factor [Shewanella pealeana ATCC 700345]
 gi|157845002|gb|ABV85501.1| NusG antitermination factor [Shewanella pealeana ATCC 700345]
          Length = 183

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +++   +    +++   E+ +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVIQAFSGYEGRVCKTLLEHIRMHEMENYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E + I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK
Sbjct: 129 MFEPGEVVRVNDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182


>gi|304415281|ref|ZP_07395976.1| transcription antitermination protein [Candidatus Regiella
           insecticola LSR1]
 gi|304282871|gb|EFL91339.1| transcription antitermination protein [Candidatus Regiella
           insecticola LSR1]
          Length = 181

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 113/174 (64%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQV+S  E +  +S+   +    ++    EI +P+E ++ +R G++  SER+FFP
Sbjct: 7   KRWYVVQVFSRFEGRVAQSLREYIKLKEVEDQFGEIMVPTEELLEMRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M +  +H ++  P+V+GF+G   + P+P++D E+  IM +++    +P    
Sbjct: 67  GYVLVQMSMNETSWHLVRSVPRVMGFIGGTSDRPAPISDKEVNAIMARLQQIGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+R+ V V IFGR TPVEL ++Q+ K
Sbjct: 127 LFEPGESVRVNDGPFADFNGTVEKVDYEKNRLTVSVSIFGRATPVELDFSQIGK 180


>gi|159039849|ref|YP_001539102.1| NusG antitermination factor [Salinispora arenicola CNS-205]
 gi|157918684|gb|ABW00112.1| NusG antitermination factor [Salinispora arenicola CNS-205]
          Length = 242

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R++   ++  + ++ +P+   V V+ G++   + + FPGY
Sbjct: 64  WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQIQAKVFPGY 123

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117
           +L++  +T + Y  +++TP V GF+G  +           E+   +     AV++     
Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  + FEVG+ V V+DG FAS    +  ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 242


>gi|260425721|ref|ZP_05779701.1| transcription termination/antitermination factor NusG [Citreicella
           sp. SE45]
 gi|260423661|gb|EEX16911.1| transcription termination/antitermination factor NusG [Citreicella
           sp. SE45]
          Length = 191

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 112/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +   GL   + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 15  MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLQEQIDEVLVPTEEVIEVRRGKKVTTERRF 74

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH +    +V GFLG    P P+ D+E+E I+ +V+     P + 
Sbjct: 75  MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVQETEDAPRTL 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GERV V+DGPF  F+G+V+ VD++  R+ V V IFGR TPVEL + QV K
Sbjct: 135 IHFEIGERVKVNDGPFEGFDGMVEGVDDDNQRLRVSVSIFGRETPVELEFTQVSK 189


>gi|219871896|ref|YP_002476271.1| transcription antitermination protein NusG [Haemophilus parasuis
           SH0165]
 gi|219692100|gb|ACL33323.1| transcription antitermination protein NusG [Haemophilus parasuis
           SH0165]
          Length = 177

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW+++Q +S  E +   ++   +    +     E+ +P+E VV    GR+  +ER+FFP
Sbjct: 1   MRWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++  E E I+N+V+    +P    
Sbjct: 61  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQREAERILNRVQETADKPRHRT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F  GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 121 EFHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 174


>gi|16077169|ref|NP_387982.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221307913|ref|ZP_03589760.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312234|ref|ZP_03594039.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221317168|ref|ZP_03598462.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221321431|ref|ZP_03602725.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|296333098|ref|ZP_06875552.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305672800|ref|YP_003864471.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|321313772|ref|YP_004206059.1| transcription antitermination protein NusG [Bacillus subtilis BSn5]
 gi|548391|sp|Q06795|NUSG_BACSU RecName: Full=Transcription antitermination protein nusG
 gi|285628|dbj|BAA02560.1| transcription antitermination factor NusG [Bacillus subtilis]
 gi|2632368|emb|CAB11877.1| transcription antitermination factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291482473|dbj|BAI83548.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. natto BEST195]
 gi|296149714|gb|EFG90609.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305411043|gb|ADM36161.1| transcription antitermination protein NusG [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|320020046|gb|ADV95032.1| transcription antitermination protein NusG [Bacillus subtilis BSn5]
          Length = 177

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E E I+ ++    ++ 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRMGMDERK- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 120 -TDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177


>gi|116748979|ref|YP_845666.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
 gi|116698043|gb|ABK17231.1| transcription antitermination protein nusG [Syntrophobacter
           fumaroxidans MPOB]
          Length = 180

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 109/175 (62%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WYIV  YS  E K   ++  R+   G   L  +I +P+E+V+ + KG++  S R+F+
Sbjct: 6   AKSWYIVHTYSGFEHKVKSALEERIKAEGKGSLFGQILVPTEKVIELVKGQRKASSRKFY 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+L++  + D  +H ++ TPKV GF+G+ E P P++D E E I+ Q+E   Q+P    
Sbjct: 66  PGYILVQMELNDDTWHLVRHTPKVTGFIGSQERPIPLSDEEAETIILQMEEGAQKPRPKF 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G+ V V DGPFASFNGIV  V  +K +V V V IFGR TPVEL + QV +I
Sbjct: 126 RFEKGDEVRVVDGPFASFNGIVDEVMPDKGKVRVLVSIFGRSTPVELDFVQVNRI 180


>gi|120613169|ref|YP_972847.1| transcription antitermination protein nusG [Acidovorax citrulli
           AAC00-1]
 gi|120591633|gb|ABM35073.1| transcription antitermination protein nusG [Acidovorax citrulli
           AAC00-1]
          Length = 197

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++R+G+      I +P+E VV ++ G++  +ERR FPG
Sbjct: 24  RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E++ I+NQ++    +P   + 
Sbjct: 84  YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196


>gi|300690140|ref|YP_003751135.1| transcription termination factor [Ralstonia solanacearum PSI07]
 gi|299077200|emb|CBJ49826.1| transcription termination factor [Ralstonia solanacearum PSI07]
          Length = 194

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    S+  R+ R+GL H+   I +PSE VV ++ G K  +ERRFFP
Sbjct: 20  KRWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G  G  P+P++  E++ IM Q++  V++P    
Sbjct: 80  GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQKEVDKIMTQIQEGVEKPRPKT 139

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194


>gi|89902361|ref|YP_524832.1| NusG antitermination factor [Rhodoferax ferrireducens T118]
 gi|89347098|gb|ABD71301.1| transcription antitermination protein nusG [Rhodoferax
           ferrireducens T118]
          Length = 202

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    +I  R++RSG+ H    I +P E VV ++ G+K  +ER+FFPG
Sbjct: 29  RWYVVHAYSGMEKAVERNITERINRSGMQHKFGRILVPMEEVVEIKNGQKKTTERKFFPG 88

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++ VM D  +H +K T KV GF+G     P+P++++E+  I+NQ++   ++P   V 
Sbjct: 89  YVLVEMVMDDDTWHLVKHTNKVTGFVGGLKTRPAPISEAEVLKIVNQMQEGTEKPRHKVE 148

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FEVGE V V DGPF  FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK
Sbjct: 149 FEVGEFVRVKDGPFTDFNGSVEDVNYEKSKVRVAVTIFGRATPVELDFSQIEK 201


>gi|253998002|ref|YP_003050065.1| NusG antitermination factor [Methylovorus sp. SIP3-4]
 gi|313200070|ref|YP_004038728.1| nusg antitermination factor [Methylovorus sp. MP688]
 gi|253984681|gb|ACT49538.1| NusG antitermination factor [Methylovorus sp. SIP3-4]
 gi|312439386|gb|ADQ83492.1| NusG antitermination factor [Methylovorus sp. MP688]
          Length = 178

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 1/178 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY VQ +S  EK     +  R++RS L  +  +I +P E V+ ++ G+K  SER+ 
Sbjct: 1   MSMRWYAVQAFSGFEKSVQRGLEERIARSDLQDMFGQILVPVEEVIEMKNGQKAISERKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H +K TP+V  F+G     P+P+ D E+E I+ +++ +   P  
Sbjct: 61  YPGYVLVQMQMNDDTWHLVKSTPRVTAFIGGTALKPTPIKDKEVEIILQRMDESKSNPTQ 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            + FE GE V V DGPF  F+G V++++ EKS++ V VVIFGR TPVEL ++QVEK V
Sbjct: 121 KLTFEKGESVRVIDGPFKDFSGNVEDINYEKSKLRVSVVIFGRATPVELDFDQVEKEV 178


>gi|56418627|ref|YP_145945.1| transcription antitermination protein NusG [Geobacillus
           kaustophilus HTA426]
 gi|56378469|dbj|BAD74377.1| transcription antitermination factor [Geobacillus kaustophilus
           HTA426]
          Length = 177

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G++  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMKDKIFRVVVPEETETDVKNGKRKTTKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+ + E++ I+ ++   +   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRMGMPLAEV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI
Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177


>gi|84499877|ref|ZP_00998143.1| transcription termination/antitermination factor NusG [Oceanicola
           batsensis HTCC2597]
 gi|84391811|gb|EAQ04079.1| transcription termination/antitermination factor NusG [Oceanicola
           batsensis HTCC2597]
          Length = 177

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 114/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAENGLEDEIEEVLVPTEEVIEIRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++  M+D  YH I    +V GFLG    P P+ D+E+  I+ +V    ++P + 
Sbjct: 61  MPGYVLVRMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVASILGRVAEGEEQPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F G+++ VD++  R+ V V IFGR TPVEL Y QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEDFTGMIEEVDDDNQRLKVSVSIFGRETPVELEYTQVTK 175


>gi|302869988|ref|YP_003838625.1| transcription termination/antitermination factor NusG
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501449|ref|YP_004080336.1| nusg antitermination factor [Micromonospora sp. L5]
 gi|302572847|gb|ADL49049.1| transcription termination/antitermination factor NusG
           [Micromonospora aurantiaca ATCC 27029]
 gi|315408068|gb|ADU06185.1| NusG antitermination factor [Micromonospora sp. L5]
          Length = 240

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R++   ++  + ++ +P+   V V+ G++   + + FPGY
Sbjct: 62  WYVVHSYAGYENKVKTNLETRITSLDMEDFIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117
           +L++  +T + Y  +++TP V GF+G  +           E+   +       Q+     
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  + FEVG+ V V+DG FAS    +  ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240


>gi|89071242|ref|ZP_01158421.1| transcription termination/antitermination factor NusG [Oceanicola
           granulosus HTCC2516]
 gi|89043228|gb|EAR49458.1| transcription termination/antitermination factor NusG [Oceanicola
           granulosus HTCC2516]
          Length = 177

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ VR+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTAVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH +    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 175


>gi|145596449|ref|YP_001160746.1| transcription termination/antitermination factor NusG [Salinispora
           tropica CNB-440]
 gi|145305786|gb|ABP56368.1| transcription antitermination protein nusG [Salinispora tropica
           CNB-440]
          Length = 242

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R++   ++  + ++ +P+   V V+ G++   + + FPGY
Sbjct: 64  WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQVQAKVFPGY 123

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117
           +L++  +T + Y  +++TP V GF+G  +           E+   +     AV++     
Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  + FEVG+ V V+DG FAS    +  ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 242


>gi|157690884|ref|YP_001485346.1| transcription antitermination protein NusG [Bacillus pumilus
           SAFR-032]
 gi|194017580|ref|ZP_03056191.1| transcription termination/antitermination factor NusG [Bacillus
           pumilus ATCC 7061]
 gi|157679642|gb|ABV60786.1| transcription antiterminator NusG [Bacillus pumilus SAFR-032]
 gi|194010852|gb|EDW20423.1| transcription termination/antitermination factor NusG [Bacillus
           pumilus ATCC 7061]
          Length = 177

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+ +   E E I+ ++   ++  
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRMG--LEER 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 119 KTEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177


>gi|288554711|ref|YP_003426646.1| transcription antitermination protein NusG [Bacillus pseudofirmus
           OF4]
 gi|288545871|gb|ADC49754.1| transcription antitermination protein NusG [Bacillus pseudofirmus
           OF4]
          Length = 177

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+    +   +  + +P E    V+ G+     ++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPVEEETEVKNGKTKQVTKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYV+++ VMTD  ++ +++TP V GF+G+   G  P+ +   E E I+ Q+   V  P
Sbjct: 61  FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTALLPEEAEAILKQMG--VSEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V +GPFA+F G ++ +  +K ++ V V +FGR TPVEL ++QVEKI
Sbjct: 119 KADLDFELKESVKVKEGPFANFIGSIEEIYLDKQKIKVHVNMFGRETPVELEFDQVEKI 177


>gi|226939174|ref|YP_002794245.1| transcription antitermination protein NusG [Laribacter
           hongkongensis HLHK9]
 gi|226714098|gb|ACO73236.1| NusG [Laribacter hongkongensis HLHK9]
          Length = 175

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 120/175 (68%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  EK   +++  R+ R+ + HL  +I +P E VV ++ G++  +ER+FFP
Sbjct: 1   MKWYVVHAYSGFEKSVQKALRERIERAEMQHLFGKILVPVEEVVDIKNGKRTLAERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K TPKV GF+G     P+P+  SE++ IM Q++  V++P   V
Sbjct: 61  GYVLVEMEMNDDTWHLVKSTPKVSGFIGGTANRPAPIKPSEVDAIMQQIQEGVEKPKPKV 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG++V VSDGPFA FNG+V  V+ E+SR+ V V IFGR TPVEL +NQVEK+
Sbjct: 121 LFEVGQKVRVSDGPFADFNGVVDEVNYERSRLRVSVQIFGRDTPVELEFNQVEKL 175


>gi|157377461|ref|YP_001476061.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
 gi|157319835|gb|ABV38933.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
          Length = 183

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E + ++++   +    ++H   EI +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVLKTLNEYIQMHNMEHYFGEILVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E + I+ ++E  V+ P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLEETVESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK
Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182


>gi|240850287|ref|YP_002971680.1| transcription antitermination protein NusG [Bartonella grahamii
           as4aup]
 gi|240267410|gb|ACS50998.1| transcription antitermination protein NusG [Bartonella grahamii
           as4aup]
          Length = 176

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 107/176 (60%), Positives = 138/176 (78%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERVV VR+GRKV++ER+F
Sbjct: 1   MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++A +TD+VYH IK+TPKV GFLG+   P P++D E+E I+ QV+  V+ P SS
Sbjct: 61  FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVEQILKQVQERVESPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176


>gi|254361447|ref|ZP_04977587.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213]
 gi|261491948|ref|ZP_05988525.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261496249|ref|ZP_05992654.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153092957|gb|EDN73983.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213]
 gi|261308080|gb|EEY09378.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312415|gb|EEY13541.1| transcription antiterminator NusG [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 187

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/175 (39%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY++Q +S  E +   ++   +    ++    E+ +P+E VV    G++  +ER+FF
Sbjct: 11  SKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQFGEVLVPTEEVVENVGGKRRKTERKFF 70

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL++  M D  +H +K  P+V+GF+G   + P+P+T  E + I+N+V+   ++P   
Sbjct: 71  PGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTADRPAPITKREADRILNRVQETAEKPRHR 130

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             F+ GE + V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK
Sbjct: 131 KEFQPGESILVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 185


>gi|319654854|ref|ZP_08008929.1| transcription antitermination protein NusG [Bacillus sp.
           2_A_57_CT2]
 gi|317393417|gb|EFV74180.1| transcription antitermination protein NusG [Bacillus sp.
           2_A_57_CT2]
          Length = 177

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETELKNGKKKVVKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E+ +I+  +   V+  
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVTNILKHMG--VEEA 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + FE+GE V V +GPFA+F G ++++D++K+++ V V +FGR TPVEL ++Q+EK+
Sbjct: 119 RFDINFEIGETVQVKEGPFANFTGTIEDIDKDKAKIKVLVNMFGRDTPVELDFSQIEKL 177


>gi|294012699|ref|YP_003546159.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S]
 gi|292676029|dbj|BAI97547.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S]
          Length = 178

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 110/176 (62%), Gaps = 3/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  ESI     R GL  LV ++ +P+E V  V++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL K  M D +YH +K+TPKV GFLG+   P  ++++E        +AA   P   
Sbjct: 60  MPGYVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEAEAARYFGAQKAAEAAPKHK 119

Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +   +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 120 INVDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175


>gi|94266155|ref|ZP_01289867.1| transcription antitermination protein NusG:KOW [delta
           proteobacterium MLMS-1]
 gi|93453270|gb|EAT03719.1| transcription antitermination protein NusG:KOW [delta
           proteobacterium MLMS-1]
          Length = 176

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 112/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E++   ++  R+  +  + +  EI +P+E+VV + KG K  S R+F
Sbjct: 1   MARRWYILHTYSGFEEQVKTALLERIKNAAQEEMFGEILVPTEQVVEMVKGAKKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   + D+ +HT++DTPKV GF+G   NP P+ D+E + I+ +++    +P   
Sbjct: 61  FPGYILVNVELNDQTWHTVRDTPKVTGFVGNDLNPEPLDDAEAKKIIGRIQDGALKPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE G++V V DGPFASF G+V  V  +K RV V V IFGR TPVEL Y QV K
Sbjct: 121 VSFEEGDQVRVVDGPFASFQGVVDEVYPDKGRVRVRVSIFGRETPVELEYIQVSK 175


>gi|303256436|ref|ZP_07342450.1| transcription termination/antitermination factor NusG
           [Burkholderiales bacterium 1_1_47]
 gi|331000376|ref|ZP_08324056.1| transcription termination/antitermination factor NusG
           [Parasutterella excrementihominis YIT 11859]
 gi|302859927|gb|EFL83004.1| transcription termination/antitermination factor NusG
           [Burkholderiales bacterium 1_1_47]
 gi|329572082|gb|EGG53751.1| transcription termination/antitermination factor NusG
           [Parasutterella excrementihominis YIT 11859]
          Length = 178

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  +WY+V  YS  EK A  ++  R++R GL     EI +P+E +  V+ G+K  S RR
Sbjct: 1   MSDMKWYVVHTYSGMEKSAESALRERIAREGLQDCFEEILVPTEDISEVKNGKKRVSTRR 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPV 118
            + GY+ +K +M D+ +H +K+T ++ GFLG     PSP+   +IE I +++EA  + P 
Sbjct: 61  MYSGYIFVKMIMNDETWHLVKNTARITGFLGGSANKPSPLPAKDIEAIKSKMEAGSEAPR 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             V FEVG  V + +GPF  FNGI++ V+ +K+R+ V V IFGR TPVELA+N+VEK
Sbjct: 121 PRVEFEVGGSVRIKNGPFTDFNGIIEEVNYDKNRLRVMVSIFGRDTPVELAFNEVEK 177


>gi|330470187|ref|YP_004407930.1| nusg antitermination factor [Verrucosispora maris AB-18-032]
 gi|328813158|gb|AEB47330.1| nusg antitermination factor [Verrucosispora maris AB-18-032]
          Length = 240

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R++   ++  + ++ +P+   V V+ G++   + + FPGY
Sbjct: 62  WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117
           +L++  +T + Y  +++TP V GF+G  +           E+   +       Q+     
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  + FEVG+ V V+DG FAS    +  ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240


>gi|13470537|ref|NP_102105.1| transcription antitermination protein NusG [Mesorhizobium loti
           MAFF303099]
 gi|14021278|dbj|BAB47891.1| transcription antitermination protein [Mesorhizobium loti
           MAFF303099]
          Length = 175

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 98/175 (56%), Positives = 129/175 (73%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  E I  +  + GL   + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MAARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KA +TD V+  +K+TPKV GFLG    P P+T++E + I+NQV+  V+RP  S
Sbjct: 61  FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR  PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174


>gi|332172374|gb|AEE21628.1| NusG antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 190

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+VQ +S  E +  +++   +    ++    EI +P+E V+ +R G++  SER+FFP
Sbjct: 16  KKWYVVQAFSQYEGRVKKTLLEYIKMHEMEDYFGEILVPTEEVIEMRSGQQRKSERKFFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M +  +H +K  P+V+GF+G   + P+P+T+ E   I+N++E  V +P    
Sbjct: 76  GYVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITNKEANAILNRLEEGVDKPKPKT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 136 LFEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189


>gi|71892331|ref|YP_278065.1| transcription antitermination protein [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796437|gb|AAZ41188.1| transcription antitermination protein [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 181

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +   S+   +    +D +  EI +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGFENRVAHSLREHIKLHNMDTMFGEIMVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D  +H +K  P+V+GF+G   + P+P+ D E+  IM++++    +P    
Sbjct: 67  GYVLVQMIMNDSSWHLVKSVPRVMGFVGGTCDKPAPIGDKEVNDIMHRLQQIGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVELDFSQVEK 180


>gi|171060542|ref|YP_001792891.1| NusG antitermination factor [Leptothrix cholodnii SP-6]
 gi|170777987|gb|ACB36126.1| NusG antitermination factor [Leptothrix cholodnii SP-6]
          Length = 188

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    ++  R+ RSG+      I +P+E VV ++ G+K  +ERRFFP
Sbjct: 14  MRWYVVHAYSGMEKAVERNLRERIDRSGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFP 73

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M D+ +H +K+T KV GF+G     P+P+++ E+  I+ Q++  +++P   V
Sbjct: 74  GYVLVEMLMDDESWHLVKNTSKVTGFVGGAKNRPTPISEDEVMKIVTQMQEGIEKPRPKV 133

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVGE V V +GPF  FNG V+ V+ +K++V V V IFGR TPVEL ++QVEK+
Sbjct: 134 EWEVGEVVRVKEGPFTDFNGSVEEVNYDKNKVRVSVTIFGRATPVELDFHQVEKV 188


>gi|311070748|ref|YP_003975671.1| transcription antitermination protein NusG [Bacillus atrophaeus
           1942]
 gi|310871265|gb|ADP34740.1| transcription antitermination protein NusG [Bacillus atrophaeus
           1942]
          Length = 177

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+ +   E E I+ ++    ++ 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRMGMDERK- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+
Sbjct: 120 -TEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177


>gi|83854994|ref|ZP_00948524.1| transcription termination/antitermination factor NusG
           [Sulfitobacter sp. NAS-14.1]
 gi|83842837|gb|EAP82004.1| transcription termination/antitermination factor NusG
           [Sulfitobacter sp. NAS-14.1]
          Length = 177

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/177 (45%), Positives = 114/177 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FEVGE+V V+DGPF  F+G+++ VD+E  R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGEKVKVTDGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177


>gi|319783303|ref|YP_004142779.1| transcription termination/antitermination factor NusG
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169191|gb|ADV12729.1| transcription termination/antitermination factor NusG
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 175

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL   + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIHQIVVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KA +TD V+  +K+TPKV GFLG    P P+T++E + I+NQV+  V+RP  S
Sbjct: 61  FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR  PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174


>gi|260432412|ref|ZP_05786383.1| transcription termination/antitermination factor NusG [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416240|gb|EEX09499.1| transcription termination/antitermination factor NusG [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 177

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V+SN EKK  E I   ++  GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVFSNFEKKIAEQIRAAVAEQGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+DK YH I    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDKGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VDEE  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDEENQKLKVSVSIFGRETPVELDFTQVTK 175


>gi|23097561|ref|NP_691027.1| transcription antitermination protein NusG [Oceanobacillus
           iheyensis HTE831]
 gi|22775784|dbj|BAC12062.1| transcriptional antiterminator [Oceanobacillus iheyensis HTE831]
          Length = 178

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G++  +  + +P +    ++ G+K   +++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKMNLEKRVESMGMEDKIFRVIVPEDEEAEIKNGKKKMVKKKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL + VMTD  ++ +++TP V GF+G+      P+P+   EI+ ++ ++   V  P
Sbjct: 61  FPGYVLTEMVMTDDSWYVVRNTPGVTGFVGSSGHGAKPTPLMPGEIDVVLKRMG--VSEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V FE+ E V V+DGPF  F G ++++D +K ++ V V +FGR TPVEL ++QVEK+
Sbjct: 119 TVQVDFEIKENVRVTDGPFTDFTGSIEHIDTDKQKIKVHVNMFGRETPVELDFSQVEKL 177


>gi|302523949|ref|ZP_07276291.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. AA4]
 gi|302432844|gb|EFL04660.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. AA4]
          Length = 265

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R     ++  + +I +P+E V  ++ G++   +R+  PGY
Sbjct: 77  WYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPGY 136

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D+ +  +++TP V GF+G    PSP+T  E+   +                 
Sbjct: 137 ILVRMDLNDQSWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPQVEKEAPAKAAKGGE 196

Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                    P   V FEVGE V V DGPFA+    +  V+ +  ++ V V IFGR TPVE
Sbjct: 197 SAAAATSGAPTVEVDFEVGESVTVMDGPFATLPATISEVNVDGQKLKVLVSIFGRETPVE 256

Query: 168 LAYNQVEKI 176
           L+++QV KI
Sbjct: 257 LSFSQVSKI 265


>gi|238061137|ref|ZP_04605846.1| transcription termination/antitermination factor nusG
           [Micromonospora sp. ATCC 39149]
 gi|237882948|gb|EEP71776.1| transcription termination/antitermination factor nusG
           [Micromonospora sp. ATCC 39149]
          Length = 240

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R++   ++  + ++ +P+   V V+ G++   + + FPGY
Sbjct: 62  WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQIQAKVFPGY 121

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117
           +L++  +T + Y  +++TP V GF+G  +           E+   +       Q+     
Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPTVETEQKKAKPE 181

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  + FEVG+ V V+DG FAS    +  ++ ++ ++ V V IFGR TPVEL +NQV KI
Sbjct: 182 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 240


>gi|269469123|gb|EEZ80671.1| hypothetical protein Sup05_0528 [uncultured SUP05 cluster
           bacterium]
          Length = 177

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY++   S  E K   +I   ++R GL+ +V ++ IP+E+VV ++ G+K  +ER+F
Sbjct: 1   MSKRWYVLHARSGYEAKVKIAIEEAVAREGLEDIVGDVMIPTEQVVELKDGQKKTAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGY+L+   +T+  +  +K+T  VIGF+G     PSP+T  E++ IM +V+    +P  
Sbjct: 61  FPGYMLVSMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKIMARVQEGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V ++ GE + V+DGPF  F G V++VD EK+ + VEV+IFGR TPVEL ++QV K
Sbjct: 121 KVAYQPGEEILVTDGPFNEFTGTVESVDYEKNLLKVEVLIFGRTTPVELEFSQVAK 176


>gi|94676921|ref|YP_588932.1| transcription termination/antitermination factor NusG [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220071|gb|ABF14230.1| transcription termination/antitermination factor NusG [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 181

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +S+   +     + L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVIQAFSGLEGRVAQSLREHIKLYATEKLFGEVIVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL+  VM D  +H +++ P+V+GF+G   + PSP++D E+  IMN+++    +P    
Sbjct: 67  GYVLVHMVMNDSSWHLVRNVPRVMGFIGGTSDRPSPISDKEVLAIMNRLQKTGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD +KSR+ V V IFGR TPVEL ++QVEK
Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYDKSRLKVSVSIFGRTTPVELDFSQVEK 180


>gi|225874474|ref|YP_002755933.1| transcription termination/antitermination factor NusG
           [Acidobacterium capsulatum ATCC 51196]
 gi|225791805|gb|ACO31895.1| transcription termination/antitermination factor NusG
           [Acidobacterium capsulatum ATCC 51196]
          Length = 205

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 116/173 (67%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+  YS  E+K  ESI GR+   GL + +  + IP+E V  +  G+K   ER F PG
Sbjct: 31  KWYIIHAYSGFERKVKESIEGRVQAFGLQNKIGRVMIPTEPVTEIVNGKKRTIERVFLPG 90

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  + + ++H IKDTP+V GFLGTG+ P  ++++E+  I+ + + + ++P   + F
Sbjct: 91  YVLVEMDLDNDLWHIIKDTPRVTGFLGTGDKPVALSEAEVSSILFRTDVSKEKPRLKIKF 150

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E  E V +++GPFA+FNG+V +++E++  + V V IFGR TPVEL + +VEKI
Sbjct: 151 EKNESVRITEGPFANFNGVVDDINEDRETLKVMVTIFGRSTPVELEFAKVEKI 203


>gi|326319231|ref|YP_004236903.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376067|gb|ADX48336.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 197

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++R+G+      I +P+E VV ++ G++  +ERR FPG
Sbjct: 24  RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E++ I+NQ++    +P   + 
Sbjct: 84  YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196


>gi|260469687|ref|ZP_05813849.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075]
 gi|259028546|gb|EEW29860.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075]
          Length = 175

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWYIV  YSN EKK  E I  +  + GL   + +I +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KA +TD V+  +K+TPKV GFLG    P P+T++E + I+NQV+  V+RP  S
Sbjct: 61  FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR  PV+L + QVEK
Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174


>gi|238897918|ref|YP_002923597.1| component in transcription antitermination [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465675|gb|ACQ67449.1| component in transcription antitermination [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 179

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +    ++    ++ +P+E VV VR G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFESRVKQSLHEHIKLHSMEDYFGDVMVPTEEVVEVRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++ +M D  +H ++  P+V+GF+G G  P+P+TD E + I+N+++    +P     
Sbjct: 67  GYVLVQMIMNDASWHLVRSVPRVMGFIG-GIVPTPITDKEADAIINRLQQTTDKPRPKTL 125

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++Q+EK
Sbjct: 126 FEPGELVRVNEGPFAEFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQIEK 178


>gi|159896654|ref|YP_001542901.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889693|gb|ABX02773.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
          Length = 188

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 107/174 (61%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY++  YS  E K ++++  R+    + + +  + +P+E  + ++ G++   +++ FPG
Sbjct: 16  HWYVIHTYSGYENKVMQNLRHRIESMDMRNQIFRVVVPTEEEIEIKNGQRRTVQKKVFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  MTD  ++ +++TP V  F+G G  PSP+ D E+  I+ Q+E   + P   V +
Sbjct: 76  YVLVQMAMTDDSWYVVRNTPGVTSFVGMGTKPSPLADEEVRFILKQMEE--EAPKVKVNY 133

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           E+G+ V ++DGPF  F G+V  +DEE+ RV V V  FGR  PVEL + QV +++
Sbjct: 134 EIGQTVKITDGPFTDFEGVVDEIDEERGRVRVLVSFFGREAPVELDFLQVIRVI 187


>gi|21672333|ref|NP_660400.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008872|sp|Q8KA65|NUSG_BUCAP RecName: Full=Transcription antitermination protein nusG
 gi|21622935|gb|AAM67611.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 181

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++Q +S  E +  +SI   +  + ++    E+ +PSE V+ +R G++  SE +FFP
Sbjct: 7   KKWYVLQAFSGFESRVAQSIKEHVKLNKMNDFFGEVMVPSEEVIEIRGGQRRKSEYKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI  +MTD  +H I++ P+V+GF+G   + PSP++D E++ I+N++     +P    
Sbjct: 67  GYVLIHMIMTDSTWHLIRNVPRVLGFIGGKSDKPSPISDKEVDIIINRLRQIGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFRQVEK 180


>gi|301059238|ref|ZP_07200175.1| transcription termination/antitermination factor NusG [delta
           proteobacterium NaphS2]
 gi|300446673|gb|EFK10501.1| transcription termination/antitermination factor NusG [delta
           proteobacterium NaphS2]
          Length = 176

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 71/176 (40%), Positives = 109/176 (61%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYIV  YS  E +  +S+  R+   G       I +P+E++V ++KG+K  + R+F
Sbjct: 1   MELKWYIVHTYSGFEDRVKKSLEERIESFGQQDYFGRILVPTEQIVELKKGQKKTTSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY+L++  +  + +HT+++T KV GF+G   NP+PV+D E E ++ Q+E  V RP + 
Sbjct: 61  YPGYILVEMHINQETWHTVRNTAKVTGFVGGEVNPTPVSDEEAERVIRQMEEGVSRPKAR 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             FE G+ V V DGPF +F G V  V  +K ++ V + IFGR TPVEL + QV  I
Sbjct: 121 YNFEEGDEVRVIDGPFTNFQGTVSEVKPDKEKLRVLITIFGRPTPVELDFIQVTTI 176


>gi|212637940|ref|YP_002314460.1| transcription antitermination protein NusG [Anoxybacillus
           flavithermus WK1]
 gi|212559420|gb|ACJ32475.1| Transcription antiterminator NusG [Anoxybacillus flavithermus WK1]
          Length = 177

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  R+   G+   +  + +P E     + G+K   +++ 
Sbjct: 1   MEKNWYVIHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEETDTKGGKKKVVKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD  ++ +++TP V GF+G+   G  P+P+ + E+  I+ ++   V   
Sbjct: 61  FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLEEEVSAILKRMG--VDLI 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                FE+ E V + +GPFA+F G ++ ++ +K +V V V +FGR TPVEL ++Q+EKI
Sbjct: 119 ELDFDFELNEAVRIKEGPFANFVGTIQEIEMDKQKVTVLVDMFGRETPVELDFSQIEKI 177


>gi|239825679|ref|YP_002948303.1| transcription antitermination protein NusG [Geobacillus sp. WCH70]
 gi|239805972|gb|ACS23037.1| NusG antitermination factor [Geobacillus sp. WCH70]
          Length = 177

 Score =  170 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  R+   G+   +  I +P E     + G+K  ++++ 
Sbjct: 1   MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETDTKNGKKKATKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+ + E+E I+ ++   +   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRMGMPLTE- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE  ++Q+EKI
Sbjct: 120 -IDVDYELNETVRVKEGPFANFTGKIEEIDLDKRKVKVLVNMFGRETPVEFEFSQIEKI 177


>gi|189424398|ref|YP_001951575.1| NusG antitermination factor [Geobacter lovleyi SZ]
 gi|189420657|gb|ACD95055.1| NusG antitermination factor [Geobacter lovleyi SZ]
          Length = 175

 Score =  170 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  YS  E K   ++  R+    ++ L  EI IPSE VV ++KG K  S R+F
Sbjct: 1   MSQKWYGVHTYSGYENKVRLNLTERVKNEKMEDLFGEILIPSETVVELKKGEKKTSSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+LIK  +TD+ +H +K+T KV GF+G G  P P+ D E+  I  ++E   ++P   
Sbjct: 61  FPGYILIKMELTDETWHIVKETAKVTGFVG-GNTPFPIPDEEVNKIARRMEEGAEKPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V F+VGE V V DGPF +F G++++V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 120 VEFDVGETVRVVDGPFLNFTGVIEDVKPDKGKLRVAVTIFGRSTPVELEFMQVEK 174


>gi|254282245|ref|ZP_04957213.1| transcription termination/antitermination factor NusG [gamma
           proteobacterium NOR51-B]
 gi|219678448|gb|EED34797.1| transcription termination/antitermination factor NusG [gamma
           proteobacterium NOR51-B]
          Length = 177

 Score =  170 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  +S  EKK   ++  R+ R G+     EI +P+E VV ++ G+K  SER+F
Sbjct: 1   MALRWYVVHAFSQYEKKVCLALKERIERYGMQDRFGEIIVPTEEVVEMKGGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  + ++ +H +K+TP+V+GF+G   + P+P+T+ E + I+ +VEA V  P  
Sbjct: 61  FPGYVLVQMELDEETWHLVKETPRVLGFIGGTADQPAPITEKEAQAILQRVEAGVDAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE GE V V DGPF  FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK
Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176


>gi|302877789|ref|YP_003846353.1| NusG antitermination factor [Gallionella capsiferriformans ES-2]
 gi|302580578|gb|ADL54589.1| NusG antitermination factor [Gallionella capsiferriformans ES-2]
          Length = 177

 Score =  170 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  EK    ++  R++R G+     +I +P E VV ++ G+KV SER+F
Sbjct: 1   MAMSWYVVHTYSQFEKSVSRALVERIAREGMQEKFGQILVPVEEVVELKGGQKVTSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  MTD+ +H +K+TPKV GFLG     P+P+++ E+++IM Q++A V++P  
Sbjct: 61  FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMRPTPISEKEVQNIMQQMQAGVEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FEVGE V V +GPF  F G+V+ V+ +K+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KVLFEVGESVRVKEGPFTDFTGMVEEVNYDKNKIRVAVTIFGRATPVELDFGQVEK 176


>gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii
           RHA1]
 gi|110818507|gb|ABG93791.1| transcription antitermination protein [Rhodococcus jostii RHA1]
          Length = 264

 Score =  170 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 75  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 134

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +   +   +         
Sbjct: 135 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 194

Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                    +P+  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 195 GETGGESFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 254

Query: 167 ELAYNQVEKI 176
           EL++ QV KI
Sbjct: 255 ELSFTQVAKI 264


>gi|307297143|ref|ZP_07576957.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1]
 gi|306877447|gb|EFN08677.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1]
          Length = 178

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 109/176 (61%), Gaps = 3/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  ESI     R GL  LV ++ +P+E V  V++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL K  M D +YH +K+TPKV GFLG+   P  +++++        + A   P   
Sbjct: 60  MPGYVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEADAARYFGAQKEAEAAPKHK 119

Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +   +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 120 ISVDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175


>gi|317125904|ref|YP_004100016.1| transcription antitermination protein nusG [Intrasporangium calvum
           DSM 43043]
 gi|315589992|gb|ADU49289.1| transcription antitermination protein nusG [Intrasporangium calvum
           DSM 43043]
          Length = 292

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W++V  Y+  E +   ++  R+    ++  + EI +P E V  ++ G+K    R   PGY
Sbjct: 109 WFVVHSYAGYENRVKANLETRIQTLNMEDYIFEIEVPMEEVTEIKNGQKKLVRRVRMPGY 168

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +TD+ +  ++ TP V GF+G    P P++  E+  ++                 
Sbjct: 169 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSIDEVFTMLAPNLEVPTEGGSGAGRS 228

Query: 114 -VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             ++P + V FEVGE V V +GPF +    +  ++ +  ++ V V IFGR TPVEL++ Q
Sbjct: 229 AAKKPAAVVDFEVGESVTVMEGPFETLPATISEINSDTQKLKVLVSIFGRETPVELSFGQ 288

Query: 173 VEKI 176
           V KI
Sbjct: 289 VAKI 292


>gi|299065395|emb|CBJ36564.1| transcription termination factor [Ralstonia solanacearum CMR15]
          Length = 194

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK    S+  R+ R+ L H+   I +PSE VV ++ G K  +ERRFFP
Sbjct: 20  KRWYVVHAYSGMEKSVQRSLQERIDRASLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MTD+ +H +K+T KV GF+G  G  P+P++  E++ IM Q++  V++P    
Sbjct: 80  GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKT 139

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194


>gi|163745521|ref|ZP_02152881.1| transcription antitermination protein NusG [Oceanibulbus indolifex
           HEL-45]
 gi|161382339|gb|EDQ06748.1| transcription antitermination protein NusG [Oceanibulbus indolifex
           HEL-45]
          Length = 177

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 113/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRASVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D  YH I    +V GFLG    P P+ D+E++ I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+++ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVADGPFEDFDGMIEEVDEDNQRLKVSVSIFGRETPVELEFTQVNK 175


>gi|37913002|gb|AAR05331.1| predicted transcription antiterminator NusG [uncultured marine
           alpha proteobacterium HOT2C01]
          Length = 177

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WYIV  YS  EKK   +I  +     ++   +EI +P+E VV V+KG+K N+ER+F
Sbjct: 1   MSHKWYIVHAYSGFEKKVAAAIFEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL K  MTD+ YH +K  PKV GFLG T   PS V++SEI  I+  +E  V  P  
Sbjct: 61  FPGYVLTKMEMTDETYHMVKSLPKVSGFLGHTQGKPSAVSESEINKILQDIEEGVTSPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK
Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176


>gi|254486647|ref|ZP_05099852.1| transcription termination/antitermination factor NusG [Roseobacter
           sp. GAI101]
 gi|214043516|gb|EEB84154.1| transcription termination/antitermination factor NusG [Roseobacter
           sp. GAI101]
          Length = 177

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 114/177 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FEVGERV V+DGPF  F+G+++ VD+E  R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGERVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177


>gi|77462246|ref|YP_351750.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
           2.4.1]
 gi|126461108|ref|YP_001042222.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|126461122|ref|YP_001042236.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221638100|ref|YP_002524362.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
           KD131]
 gi|77386664|gb|ABA77849.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
           2.4.1]
 gi|126102772|gb|ABN75450.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|126102786|gb|ABN75464.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221158881|gb|ACL99860.1| Transcription antitermination protein nusG [Rhodobacter sphaeroides
           KD131]
          Length = 177

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+++ YH I    +V GFLG    P P+ DSE+  I+N+VE    +P S 
Sbjct: 61  MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + +++GE V V+DGPF  F+G+V++VDEE SR+ V V IFGR TPVEL + QV K
Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175


>gi|170729021|ref|YP_001763047.1| NusG antitermination factor [Shewanella woodyi ATCC 51908]
 gi|169814368|gb|ACA88952.1| NusG antitermination factor [Shewanella woodyi ATCC 51908]
          Length = 183

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +++   +    ++    EI +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVTKTLHEYIQMHSMEQYFGEILVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E   I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEANAILQRLQETTETPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK
Sbjct: 129 IFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182


>gi|254453476|ref|ZP_05066913.1| transcription termination/antitermination factor NusG
           [Octadecabacter antarcticus 238]
 gi|198267882|gb|EDY92152.1| transcription termination/antitermination factor NusG
           [Octadecabacter antarcticus 238]
          Length = 188

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 114/177 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  ESI   +   GL+  + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 12  MAKRWYSVSVLSNFEKKIAESIRASVEEHGLEEQIGEVLVPTEEVIEIRRGKKVTAERRF 71

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D  YH I    +V GFLG    P P+ D+E++ I+ +VE     P + 
Sbjct: 72  MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FE+GE+V VS+GPF  F+G+V+ VDEE  R+ V V IFGR TPVEL + QV K V
Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEENQRLKVTVSIFGRATPVELEFTQVSKQV 188


>gi|121602807|ref|YP_988876.1| transcription antitermination protein NusG [Bartonella
           bacilliformis KC583]
 gi|120614984|gb|ABM45585.1| transcription termination/antitermination factor NusG [Bartonella
           bacilliformis KC583]
          Length = 176

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 106/176 (60%), Positives = 134/176 (76%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIVQ YSN EKK  E+I     + GLDHL  +I +P ERVV VR+GRKV+SER+F
Sbjct: 1   MVARWYIVQAYSNFEKKVAEAISKEAKQKGLDHLFKKIFVPIERVVEVRRGRKVDSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+ A +TD VYH IK+TPKV GFLG+   P P++D E E I+ QV+  V+ P SS
Sbjct: 61  FPGYVLVCAELTDDVYHLIKNTPKVTGFLGSDARPVPISDREAEQILQQVQEGVESPKSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FEVGE+V V+DGPF SFNG+V+ V+E++SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 121 VTFEVGEQVRVADGPFISFNGVVQEVEEDRSRLKVEVLIFGRPTPVDLEFGQVEKL 176


>gi|332040082|gb|EGI76467.1| NusG antitermination factor [Hylemonella gracilis ATCC 19624]
          Length = 195

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    +I  R++R+GL      I +P E VV V+ G+K  +ER+FFPG
Sbjct: 21  RWYVVHAYSGMEKAVERNILERINRAGLQGKFGRILVPMEEVVEVKNGQKRTTERKFFPG 80

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           YVL++ VM D+ +H +K T KV GF+G G+   P+P+++ E+  I+NQ++    +P   V
Sbjct: 81  YVLVEMVMDDESWHLVKHTSKVTGFVGGGKNNRPTPISEEEVMKIVNQMQEGSDKPRHKV 140

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F VGE V V +GPF  FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 141 EFTVGELVRVKEGPFTDFNGAVEEVNYEKSKVRVAVTIFGRSTPVELEFGQVEK 194


>gi|226305205|ref|YP_002765163.1| transcription antitermination protein NusG [Rhodococcus
           erythropolis PR4]
 gi|229490716|ref|ZP_04384554.1| transcription antitermination protein NusG [Rhodococcus
           erythropolis SK121]
 gi|226184320|dbj|BAH32424.1| transcription antitermination protein NusG [Rhodococcus
           erythropolis PR4]
 gi|229322536|gb|EEN88319.1| transcription antitermination protein NusG [Rhodococcus
           erythropolis SK121]
          Length = 278

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 88  WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 147

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +   +             
Sbjct: 148 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLLPQQEQKKQQAAAAAVA 207

Query: 112 ------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                  +  +P+  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TP
Sbjct: 208 AGEAPSESFGKPLIEVDFEVGESVTVMDGPFATLPASISEVNGEQQKLKVLVSIFGRETP 267

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 268 VELNFNQVAKI 278


>gi|167855963|ref|ZP_02478710.1| transcription antitermination protein NusG [Haemophilus parasuis
           29755]
 gi|167852900|gb|EDS24167.1| transcription antitermination protein NusG [Haemophilus parasuis
           29755]
          Length = 192

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW+++Q +S  E +   ++   +    +     E+ +P+E VV    GR+  +ER+FFP
Sbjct: 16  MRWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K  P+V+GF+G   + P+P++ SE E I+N+V+    +P    
Sbjct: 76  GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQSEAERILNRVQETADKPRHRT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F  GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK
Sbjct: 136 EFHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 189


>gi|163732875|ref|ZP_02140320.1| transcription antitermination protein NusG [Roseobacter litoralis
           Och 149]
 gi|161394235|gb|EDQ18559.1| transcription antitermination protein NusG [Roseobacter litoralis
           Och 149]
          Length = 177

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 114/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+DK YH +    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+++ VD+E  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 175


>gi|171462866|ref|YP_001796979.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192404|gb|ACB43365.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 190

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/174 (50%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++  YS  EK     +  R++RSG+      I +PSE VV ++ G K  SERRFFP
Sbjct: 16  MRWYVIHAYSGMEKSVKRDLEERIARSGMPEKFGRILVPSEEVVEIKSGTKSVSERRFFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  MTD+ +H +K+TPKV GF+G     PSP++ +E+  IM+Q++A V +P    
Sbjct: 76  GYVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVTKIMDQMQAGVDKPKPKT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FEVGE V V +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 136 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEK 189


>gi|83941516|ref|ZP_00953978.1| transcription termination/antitermination factor NusG
           [Sulfitobacter sp. EE-36]
 gi|83847336|gb|EAP85211.1| transcription termination/antitermination factor NusG
           [Sulfitobacter sp. EE-36]
          Length = 177

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/177 (45%), Positives = 114/177 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FEVGE+V V+DGPF  F+G+++ VD+E  R+ V V IFGR TPVEL + QV K V
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177


>gi|300782525|ref|YP_003762816.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32]
 gi|299792039|gb|ADJ42414.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32]
          Length = 288

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R     ++  + +I +P+E V  ++ G++   +R+  PGY
Sbjct: 100 WYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D  +  +++TP V GF+G    PSP+T  E+   +     +           
Sbjct: 160 ILVRMDLNDASWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPKVESEAPAKSGKGES 219

Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                    P   V FE+GE V V DGPFA+    +  V+ +  ++ V V IFGR TPVE
Sbjct: 220 TATAAPLGGPAVEVDFEIGESVTVMDGPFATLPATISEVNIDGQKLKVLVSIFGRETPVE 279

Query: 168 LAYNQVEKI 176
           L++NQV KI
Sbjct: 280 LSFNQVSKI 288


>gi|109896921|ref|YP_660176.1| NusG antitermination factor [Pseudoalteromonas atlantica T6c]
 gi|109699202|gb|ABG39122.1| transcription antitermination protein nusG [Pseudoalteromonas
           atlantica T6c]
          Length = 190

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+VQ +S  E +  +++   +    ++    EI +P+E V+ +R G++  SER+FFP
Sbjct: 16  KKWYVVQAFSQYEGRVKKTLLEYIKMHEMEDSFGEILVPTEEVIEMRSGQQRKSERKFFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M +  +H +K  P+V+GF+G   + P+P+T  E   I+N++E  V +P    
Sbjct: 76  GYVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITTKEANAILNRLEEGVDKPKPKT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 136 LFEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189


>gi|264676489|ref|YP_003276395.1| NusG antitermination factor [Comamonas testosteroni CNB-2]
 gi|299531364|ref|ZP_07044774.1| transcription termination/antitermination factor NusG [Comamonas
           testosteroni S44]
 gi|262207001|gb|ACY31099.1| NusG antitermination factor [Comamonas testosteroni CNB-2]
 gi|298720771|gb|EFI61718.1| transcription termination/antitermination factor NusG [Comamonas
           testosteroni S44]
          Length = 195

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++RS +      I +PSE VV +R G +  +ERR FPG
Sbjct: 22  RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E+  I++Q++   ++P   V 
Sbjct: 82  YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194


>gi|117927503|ref|YP_872054.1| transcription antitermination protein nusG [Acidothermus
           cellulolyticus 11B]
 gi|117647966|gb|ABK52068.1| transcription antitermination protein nusG [Acidothermus
           cellulolyticus 11B]
          Length = 228

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 6/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E +A  ++  R+    ++  + ++ +P E VV ++ G++   +R  FPG
Sbjct: 50  QWYVVHTYAGYENRAKANLENRIQSLNMEDYIYQVEVPQEEVVEIKNGKRQIVKRNIFPG 109

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRP----- 117
           YVL++  +TD+ +  ++ TP V GF+G     P+P+T  E+   +     + +       
Sbjct: 110 YVLVRMELTDESWAAVRYTPAVTGFVGPSASKPAPLTLDEVLRFLAPAVKSRKEAAAAAT 169

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V FEVGE V V DGPFA+    +  ++ ++ ++ V V IFGR TPVEL++NQV KI
Sbjct: 170 PKIVDFEVGESVTVMDGPFATLPATISEINPDQQKLKVLVSIFGRETPVELSFNQVAKI 228


>gi|88861455|ref|ZP_01136082.1| component in transcription antitermination; couples translation and
           transcription [Pseudoalteromonas tunicata D2]
 gi|88816537|gb|EAR26365.1| component in transcription antitermination; couples translation and
           transcription [Pseudoalteromonas tunicata D2]
          Length = 185

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q +S  EK+  ++I   +    L+H   EI +P+E VV +R G+K  SER+FFPG
Sbjct: 11  RWYVIQAFSGFEKRVQQTILEHIRIQNLEHFFGEILVPTEEVVEMRAGQKRKSERKFFPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++  M D  +H +   P+V+GF+G   E P+P++  E + I+N+++     P  +  
Sbjct: 71  YVLVQMDMNDASWHLVNSIPRVMGFIGGTKERPAPISSKEADRILNRLQENADSPKPATL 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           FE GE V V+DGPFA F G+V+ VD EKSRV V V+IFGR TPVEL + QVE
Sbjct: 131 FEPGEVVRVTDGPFADFTGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182


>gi|254438013|ref|ZP_05051507.1| transcription termination/antitermination factor NusG
           [Octadecabacter antarcticus 307]
 gi|198253459|gb|EDY77773.1| transcription termination/antitermination factor NusG
           [Octadecabacter antarcticus 307]
          Length = 188

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 113/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E+I   +   GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 12  MAKRWYSVSVLSNFEKKIAETIRASVEEHGLEEQIGEVLVPTEEVIEVRRGKKVTAERRF 71

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D  YH I    +V GFLG    P P+ D+E++ I+ +VE     P + 
Sbjct: 72  MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V VS+GPF  F+G+V+ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 186


>gi|298246509|ref|ZP_06970315.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963]
 gi|297553990|gb|EFH87855.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963]
          Length = 196

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 105/172 (61%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ +  YS  E K    +  R++   +   +  + +P E  V +++G++   +R+ FPGY
Sbjct: 25  WFAIHTYSGYENKVRSHLEARIASMDMRGKIFRVIVPMEEEVEIKQGQRRTVQRKVFPGY 84

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL++ +M+D+ ++ +++TP V  F+G+G  P P+ + EI+ I+ QV    ++P + V F 
Sbjct: 85  VLVEMIMSDEAWYVVRNTPGVTSFVGSGNKPVPLQEHEIKTILKQVTKETEKPKAKVSFS 144

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V V DGPFA F G V +++ ++++V V V  FGR TPV L + QVEKI
Sbjct: 145 KGQSVRVVDGPFADFIGTVSDLNMDRNKVTVLVSFFGRETPVILDFLQVEKI 196


>gi|146278581|ref|YP_001168740.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17025]
 gi|145556822|gb|ABP71435.1| transcription antitermination protein nusG [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 178

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+++ YH I    +V GFLG    P P+ DSE+  I+N+VE    +P S 
Sbjct: 61  MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + +++GE V V+DGPF  F+G+V++VDEE SR+ V V IFGR TPVEL + QV K
Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175


>gi|221069403|ref|ZP_03545508.1| NusG antitermination factor [Comamonas testosteroni KF-1]
 gi|220714426|gb|EED69794.1| NusG antitermination factor [Comamonas testosteroni KF-1]
          Length = 195

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++RS +      I +PSE VV +R G +  +ERR FPG
Sbjct: 22  RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E+  I++Q++   ++P   V 
Sbjct: 82  YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK
Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194


>gi|330814211|ref|YP_004358450.1| transcription antitermination protein NusG [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487306|gb|AEA81711.1| transcription antitermination protein NusG [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 175

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 121/174 (69%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIVQ YS  EKK  E I   L ++ L     ++ +P++ V  ++KG+K   ++++FP
Sbjct: 2   MKWYIVQSYSGFEKKVSEQIQEELDKADLSDHFDQVLVPTQDVTEIKKGKKTIVKKKYFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL K +MTD++YH IKD  KV GFLG    PSP+ + E++ I+  +E ++  P SSV 
Sbjct: 62  GYVLAKMIMTDQIYHLIKDLKKVSGFLGPQGKPSPIHEDEVQKILGNMEESISNPTSSVI 121

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F +GE+V VSDGPFASFNG+V+ +DE+KSR+ V V IFGR TPV+L Y QVEK+
Sbjct: 122 FTIGEQVKVSDGPFASFNGLVEEIDEDKSRLKVSVSIFGRPTPVDLDYAQVEKL 175


>gi|302336397|ref|YP_003801604.1| transcription antitermination protein nusG [Olsenella uli DSM 7084]
 gi|301320237|gb|ADK68724.1| transcription antitermination protein nusG [Olsenella uli DSM 7084]
          Length = 182

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 5/181 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M  RWY+V  YS  E K    +  R+   GL+  + +I IP+E V  ++ G ++   E +
Sbjct: 1   MAKRWYVVHTYSGYENKVKTDLEHRIETYGLEDQIVDIQIPTEEVTEIKDGGKRETKESK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV- 118
            FPGYVL++  + D  +  +++TP V GF+G    P+P+  SE   IM +      +   
Sbjct: 61  VFPGYVLVRMDVDDNSWAVVRNTPGVTGFVGIDGKPTPLRRSEFNKIMRRTNPRGAQEPK 120

Query: 119 ---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               +   EVG+ V V  GP A F+G+V  V  E  +V V + IFGR TPVEL  +Q+  
Sbjct: 121 RTTMTTDLEVGQAVKVVSGPLADFDGLVSEVMPEAGKVKVMLTIFGRETPVELTLDQIAT 180

Query: 176 I 176
           I
Sbjct: 181 I 181


>gi|121606533|ref|YP_983862.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
 gi|120595502|gb|ABM38941.1| transcription antitermination protein nusG [Polaromonas
           naphthalenivorans CJ2]
          Length = 198

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  EK A  +I  R++R+G+        +P+E VV ++ G+K  +ERRFFP
Sbjct: 24  MQWYVVHAYSGMEKAAERNIVERINRAGMQSKFGRFLVPTEEVVEIKNGQKKTTERRFFP 83

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H +K T KV GF+G     P+P+++ E++ I++Q++    +P   V
Sbjct: 84  GYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQVGTDKPRHKV 143

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPF  FNG V+ V+ EK++V V V IFGR TPVEL ++Q+EK
Sbjct: 144 EFEAGEYVRVKDGPFTDFNGTVEEVNYEKNKVRVSVTIFGRATPVELEFSQIEK 197


>gi|163739418|ref|ZP_02146828.1| NusG antitermination factor [Phaeobacter gallaeciensis BS107]
 gi|161387171|gb|EDQ11530.1| transcription antitermination protein [Phaeobacter gallaeciensis
           BS107]
          Length = 177

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++  GL+  + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD++  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175


>gi|134103300|ref|YP_001108961.1| putative transcription antitermination regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004481|ref|ZP_06562454.1| putative transcription antitermination regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915923|emb|CAM06036.1| putative transcription antitermination regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 283

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R     ++  + ++ +P+E V  ++ G++   +R+  PGY
Sbjct: 98  WYVVHSYAGYENKVKTNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKLVQRKVLPGY 157

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119
           +L++  + D  +  +++TP V GF+G   +PSP++  ++   +        +P +     
Sbjct: 158 ILVRMELNDASWSAVRNTPGVTGFIGATSHPSPLSIDDVLKFLAPRAEKEAKPEAGKKAA 217

Query: 120 ---------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                     V FEVGE + V DGPFA+    +  V+ +  ++ V V IFGR TPVEL++
Sbjct: 218 APAAAKPSVEVDFEVGESITVMDGPFATLPATISEVNADAQKLKVLVSIFGRETPVELSF 277

Query: 171 NQVEKI 176
           NQV KI
Sbjct: 278 NQVSKI 283


>gi|319404387|emb|CBI77990.1| transcription antitermination protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 182

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/175 (59%), Positives = 136/175 (77%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERVV +R+GRKV+SER+FF
Sbjct: 8   AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+L+ A +TD+VYH IK+TPKV GFLG+   P P++D E E I+ QV+  V+ P SS+
Sbjct: 68  PGYILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVKEGVESPKSSM 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182


>gi|119713237|gb|ABL97303.1| putative transcription antiterminator NusG [uncultured marine
           bacterium HF10_12C08]
          Length = 177

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT +WYIV  YS  EKK   +I  +     ++   +EI +P+E VV V+KG+K N+ER+F
Sbjct: 1   MTHKWYIVHAYSGFEKKVAAAILEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL K  MTD+ YH +K  PKV GFLG T   PS V +S+I  I+  +E  V  P  
Sbjct: 61  FPGYVLTKMEMTDETYHMVKALPKVSGFLGHTQGKPSAVPESDINKILQDIEEGVTSPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK
Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176


>gi|148555476|ref|YP_001263058.1| transcription antitermination protein nusG [Sphingomonas wittichii
           RW1]
 gi|148500666|gb|ABQ68920.1| transcription antitermination protein nusG [Sphingomonas wittichii
           RW1]
          Length = 179

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/179 (48%), Positives = 122/179 (68%), Gaps = 4/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  E+I    +R GL+ LV  + +P+E+V  VR+G+K+ S+R+F
Sbjct: 1   MA-RWYIIHAYSGFENKVREAILADAARLGLEQLVEAVEVPTEKVTEVRRGKKITSDRKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRP 117
           FPGYVL K  M D VYH +K+TPKV GFLG+   P P++++E   I+N   +  AA  + 
Sbjct: 60  FPGYVLAKLSMNDDVYHLVKNTPKVTGFLGSSGKPQPISEAEAARILNTKEEAAAAAPKT 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +E+G++V V DGPFASFNG+V+ +D ++SRV V V IFGR TPVEL + QVE++
Sbjct: 120 KLKVDYEIGDQVKVLDGPFASFNGVVEELDFDRSRVKVSVSIFGRATPVELEFEQVERV 178


>gi|271962615|ref|YP_003336811.1| transcription antiterminator-like protein [Streptosporangium roseum
           DSM 43021]
 gi|270505790|gb|ACZ84068.1| Transcription antiterminator-like protein [Streptosporangium roseum
           DSM 43021]
          Length = 266

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 6/178 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   +I  R     ++  + ++ +P+  V  V+ G++   + R  PGY
Sbjct: 89  WYVIHSYAGYENRVKSNIETRTQSLNMEDYIFQVEVPTHHVTEVKSGKRQLVKERVLPGY 148

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119
           VL++  +TD+ +  +++TP V GF+G    PSP++  E+  ++    +   +  +     
Sbjct: 149 VLVRMDLTDESWSAVRNTPGVTGFVGLSNKPSPLSLDEVAKLLAPEPSEEVKKSTAKASA 208

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +V FE+GE V V DGPFA+    V  +  E  ++ V V IFGR TPVEL++NQV KI
Sbjct: 209 ATVDFEIGESVTVMDGPFATLPATVSEISAESQKLKVLVSIFGRETPVELSFNQVSKI 266


>gi|83949812|ref|ZP_00958545.1| transcription termination/antitermination factor NusG [Roseovarius
           nubinhibens ISM]
 gi|83837711|gb|EAP77007.1| transcription termination/antitermination factor NusG [Roseovarius
           nubinhibens ISM]
          Length = 177

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 114/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRQSVTEQALEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEETPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD++  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMVEEVDDDNQRLKVTVSIFGRETPVELEFTQVAK 175


>gi|15612681|ref|NP_240984.1| transcription antitermination protein NusG [Bacillus halodurans
           C-125]
 gi|14423809|sp|Q9KGE7|NUSG_BACHD RecName: Full=Transcription antitermination protein nusG
 gi|10172730|dbj|BAB03837.1| transcriptional antitermination factor [Bacillus halodurans C-125]
          Length = 178

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+    +   +  + +P E    V+ G+     R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+   E++ I+ Q+    +  
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQM-GMQEER 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + F++ E V V +GPFA+F G ++ +  +K ++ V V +FGR TPVEL + Q+EKI
Sbjct: 120 QVEIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178


>gi|254467081|ref|ZP_05080492.1| transcription termination/antitermination factor NusG
           [Rhodobacterales bacterium Y4I]
 gi|206687989|gb|EDZ48471.1| transcription termination/antitermination factor NusG
           [Rhodobacterales bacterium Y4I]
          Length = 177

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++  GL+  + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTAVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +VE  V+ P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVETPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VDE+  ++ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQKLKVTVSIFGRETPVELDFAQVTK 175


>gi|226361072|ref|YP_002778850.1| transcription antitermination protein NusG [Rhodococcus opacus B4]
 gi|226239557|dbj|BAH49905.1| transcription antitermination protein NusG [Rhodococcus opacus B4]
          Length = 288

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 99  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 158

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +   +   +         
Sbjct: 159 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 218

Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                    +P+  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 219 GETGGETFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 278

Query: 167 ELAYNQVEKI 176
           EL++ QV KI
Sbjct: 279 ELSFTQVAKI 288


>gi|126732293|ref|ZP_01748093.1| transcription termination/antitermination factor NusG [Sagittula
           stellata E-37]
 gi|126707162|gb|EBA06228.1| transcription termination/antitermination factor NusG [Sagittula
           stellata E-37]
          Length = 182

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +   GL   + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 6   MAKRWYSVSVLSNFEKKIAEQIRTSVEEQGLQDQIDEVMVPTEEVIEVRRGKKVTTERRF 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I +  +V GFLG    P P+ D+E+E I+ +V+ + + P + 
Sbjct: 66  MPGYVLVHMEMSDRGYHLISNINRVTGFLGPQGRPMPMRDAEVEAILGRVQESDEAPRTL 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GERV V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 126 IHFEIGERVKVNDGPFEGFDGMVEGVDEDNQRLSVSVSIFGRETPVELDFTQVSK 180


>gi|296138474|ref|YP_003645717.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162]
 gi|296026608|gb|ADG77378.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162]
          Length = 276

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 22/195 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 82  WYVIHTYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQQKRVNRKVLPGY 141

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +                 
Sbjct: 142 ILVRMDLNDESWGAVRNTPGVTGFVGLTSKPSPLTMNEVVKFLLPESARTKPAKDKGAAA 201

Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                    A  Q P   V FEVGE V V DGPFA+    +  ++ E+ ++ V V IFGR
Sbjct: 202 DGAAAASGGAVSQGPAVEVDFEVGESVTVMDGPFATLPASISEINAEQRKLKVLVSIFGR 261

Query: 163 VTPVELAYNQVEKIV 177
            TPVELA+NQVEKI+
Sbjct: 262 ETPVELAFNQVEKII 276


>gi|317509041|ref|ZP_07966672.1| transcription termination/antitermination factor NusG [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252696|gb|EFV12135.1| transcription termination/antitermination factor NusG [Segniliparus
           rugosus ATCC BAA-974]
          Length = 263

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 16/189 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++  R+    +   + +I +P+E V  V+ G++    R+  PG
Sbjct: 75  KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 134

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           Y+L++  + D+ + T+++TP V GF+GT        D  ++ ++ + E            
Sbjct: 135 YILVRMDLNDESWSTVRNTPGVTGFVGTSRPTPLTLDDVVKFLLPRQEPKKTAPAAKAKQ 194

Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                    PV+ V ++VGE V V+DGPFA+    +  ++ E+ ++ V V IFGR TPVE
Sbjct: 195 GDGFAAAIAPVALVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPVE 254

Query: 168 LAYNQVEKI 176
           L++NQV KI
Sbjct: 255 LSFNQVTKI 263


>gi|85858133|ref|YP_460335.1| transcription antitermination protein [Syntrophus aciditrophicus
           SB]
 gi|85721224|gb|ABC76167.1| transcription antitermination protein [Syntrophus aciditrophicus
           SB]
          Length = 176

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 109/173 (63%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  E K  +S+  R+  +G+    ++I IP E VV +  G K  S+R+F
Sbjct: 1   MAFKWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+K  + D  +H +KDTPKV GF+G+ E PSP+ D ++E +  +++    +P   
Sbjct: 61  FPGYILVKMELDDDTWHLVKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPK 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             FEVG+ V + DGPF +F+G++  V  EK ++ V V IFGR TPVEL + QV
Sbjct: 121 FKFEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173


>gi|311086362|gb|ADP66443.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
          Length = 181

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +SI   +  + ++ L  E+ +PS+ VV +R G++  SE +FFP
Sbjct: 7   KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRSGQRRKSEYKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  MTD  +H I++ PKV+GF+G   + PSP++D E+E I+N++     +P    
Sbjct: 67  GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180


>gi|149203664|ref|ZP_01880633.1| transcription termination/antitermination factor NusG [Roseovarius
           sp. TM1035]
 gi|149142781|gb|EDM30823.1| transcription termination/antitermination factor NusG [Roseovarius
           sp. TM1035]
          Length = 177

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRQSVTENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175


>gi|163740207|ref|ZP_02147601.1| transcription termination/antitermination factor NusG [Phaeobacter
           gallaeciensis 2.10]
 gi|161386065|gb|EDQ10440.1| transcription termination/antitermination factor NusG [Phaeobacter
           gallaeciensis 2.10]
          Length = 177

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++  GL+  + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD++  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175


>gi|110634174|ref|YP_674382.1| transcription antitermination protein NusG [Mesorhizobium sp. BNC1]
 gi|9957208|gb|AAG09265.1| NusG [EDTA-degrading bacterium BNC1]
 gi|110285158|gb|ABG63217.1| transcription antitermination protein nusG [Chelativorans sp. BNC1]
          Length = 174

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 101/175 (57%), Positives = 131/175 (74%), Gaps = 2/175 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYIV  YSN EKK  ESI  +  + GL +L+  + +P+E+VV VR+GRKV++ER+F
Sbjct: 1   MA-RWYIVHAYSNFEKKVAESIEEQARQKGLSNLIENVVVPTEKVVEVRRGRKVDAERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KA +TD V+  IK+TPKV GFLG    P P+T++E + I+ QV+  V+RP  S
Sbjct: 60  FPGYVLVKADLTDAVFSLIKNTPKVTGFLG-DSKPVPITEAEAQRILTQVQEGVERPKPS 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR  PV+L + QVEK
Sbjct: 119 VTFEIGEQVRVSDGPFASFNGFVQEVDEERSRLKVEVSIFGRAVPVDLEFGQVEK 173


>gi|254512261|ref|ZP_05124328.1| transcription termination/antitermination factor NusG
           [Rhodobacteraceae bacterium KLH11]
 gi|221535972|gb|EEE38960.1| transcription termination/antitermination factor NusG
           [Rhodobacteraceae bacterium KLH11]
          Length = 177

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 114/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++  GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDDIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+N+V+   + P   
Sbjct: 61  MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPKLM 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD+E  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDFTQVTK 175


>gi|319408378|emb|CBI82033.1| transcription antitermination protein [Bartonella schoenbuchensis
           R1]
          Length = 182

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 138/175 (78%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERVV VR+GR+V+SER+FF
Sbjct: 8   AARWYIVQAYSNFEKKVAEAIEKEAKQKGLDHLFEKIFVPTERVVEVRRGRRVDSERKFF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+ A +TD+VYH IK+TPKV GFLG+   P P++D EIEHI+ QV+  V+ P SS+
Sbjct: 68  PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREIEHILKQVQEGVESPKSSI 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 LFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVIIFGRPTPVDLEFSQVEKL 182


>gi|15616668|ref|NP_239880.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681425|ref|YP_002467810.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219681981|ref|YP_002468365.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471100|ref|ZP_05635099.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|11133951|sp|P57151|NUSG_BUCAI RecName: Full=Transcription antitermination protein nusG
 gi|25299609|pir||F84934 transcription antitermination protein nusG [imported] - Buchnera
           sp. (strain APS)
 gi|10038731|dbj|BAB12766.1| transcription antitermination protein nusG [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219621714|gb|ACL29870.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624268|gb|ACL30423.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085787|gb|ADP65869.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086940|gb|ADP67020.1| transcription antitermination protein NusG [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 181

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +SI   +  + ++ L  E+ +PS+ VV +R G++  SE +FFP
Sbjct: 7   KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKSEYKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  MTD  +H I++ PKV+GF+G   + PSP++D E+E I+N++     +P    
Sbjct: 67  GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK
Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180


>gi|108804986|ref|YP_644923.1| transcription antitermination protein nusG [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766229|gb|ABG05111.1| transcription antitermination protein nusG [Rubrobacter
           xylanophilus DSM 9941]
          Length = 176

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  E K   ++  R+   GL     EI IP+E+V+ ++ G+KV +  R FP
Sbjct: 2   KKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSSV 121
           GY+L+   M D  +  I+ TP V   +G+G+ P+P++ +E+E +++       ++  ++V
Sbjct: 62  GYILVNVEMNDDTWRVIRQTPGVTQIVGSGDKPTPLSRAEVERLLHPEEPEKREKVKATV 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F++GE V V  GP + F G + +++ ++S+V V V IFGR TPVEL++NQV K+
Sbjct: 122 DFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAKL 176


>gi|114331777|ref|YP_747999.1| transcription antitermination protein NusG [Nitrosomonas eutropha
           C91]
 gi|114308791|gb|ABI60034.1| transcription antitermination protein nusG [Nitrosomonas eutropha
           C91]
          Length = 177

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/177 (45%), Positives = 112/177 (63%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  YS  EK   +++  R+     +    EI IP E VV V+ G+K  SER+F
Sbjct: 1   MSKKWYAVHTYSGFEKSVKKALRDRIVLHKFEDKFGEILIPVEEVVEVKGGQKNISERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FP Y+LI+  MTD+ +H +K TPKV GF+G     P P++  EIE I NQV   V++P  
Sbjct: 61  FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSMQPIPISRKEIESIFNQVREGVEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FE GE V V +GPF  F+G V+ V+ +K+++ V V IFGR TPVEL ++QV+KI
Sbjct: 121 KVIFEAGEAVRVKEGPFTDFHGNVEEVNYDKNKLRVSVSIFGRPTPVELDFHQVDKI 177


>gi|90407970|ref|ZP_01216143.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3]
 gi|90310908|gb|EAS39020.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3]
          Length = 182

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +++   +  + ++    EI +P+E VV +R G+K  SER+FFP
Sbjct: 8   MRWYVVQAFSGYEGRVQKTLIEHIKLNEMEEYFGEILVPTEEVVEMRAGQKRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+T +V+GF+G   E P+P++  E+E+I+N+++ +V  P    
Sbjct: 68  GYVLVQMAMNDASWHLVKNTDRVMGFIGGTKERPAPISPKEVENILNRLQESVDSPRPRT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE G+ V V DGPF+ F+G V+ VD +KSR+ V V IFGR TPV+L ++QVEK
Sbjct: 128 LFEAGQIVRVVDGPFSDFSGTVEEVDYDKSRLKVSVSIFGRATPVDLEFSQVEK 181


>gi|319407388|emb|CBI81039.1| transcription antitermination protein [Bartonella sp. 1-1C]
          Length = 182

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/175 (60%), Positives = 136/175 (77%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWYIVQ YSN EKK  E+I     + GLDHL  +I +P+ERVV +R+GRKV+SER+FF
Sbjct: 8   AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+ A +TD+VYH IK+TPKV GFLG+   P P++D E+E I+ QV+  V+ P SS+
Sbjct: 68  PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVESPKSSM 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 182


>gi|269955419|ref|YP_003325208.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894]
 gi|269304100|gb|ACZ29650.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894]
          Length = 265

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + +I +P E V  ++  +K    R   PGY
Sbjct: 80  WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKTVRRVRIPGY 139

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111
           VL++  +TD+ +  ++ TP V GF+G    P P+T  E+  ++                 
Sbjct: 140 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPTMLEAPAAAGKPSTA 199

Query: 112 -AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
            A  +     V FEVGE V V+DGPF +    +  ++ E  ++ V V IFGR TPVEL++
Sbjct: 200 AAKAKAAAVVVDFEVGESVTVTDGPFDTLPATISEINVEAQKLKVLVSIFGRETPVELSF 259

Query: 171 NQVEKI 176
           NQV KI
Sbjct: 260 NQVAKI 265


>gi|269128551|ref|YP_003301921.1| NusG antitermination factor [Thermomonospora curvata DSM 43183]
 gi|268313509|gb|ACY99883.1| NusG antitermination factor [Thermomonospora curvata DSM 43183]
          Length = 238

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 7/179 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E +   +I  R     ++  + ++ +P   V  +++G++     +  PGY
Sbjct: 60  WYVVHSYAGYENRVKANIETRTQSLNMEDYIFQVEVPQHEVTEIKQGKRQKVNEKMLPGY 119

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------RP 117
           +L++  +TD+ +  +++TP V GF+G    PSP++  E+  ++       +       + 
Sbjct: 120 ILVRMELTDESWAAVRNTPGVTGFVGLLNKPSPLSLDEVAKLLAPPPEEEKGKAKEQTKV 179

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            S+V FEVGE V V DGPF +    V  ++ E+ ++ V V IFGR TPVEL++NQV KI
Sbjct: 180 TSTVEFEVGESVTVMDGPFQTLPATVSEINVEQQKLKVLVSIFGRETPVELSFNQVSKI 238


>gi|254823017|ref|ZP_05228018.1| transcription antitermination protein NusG [Mycobacterium
           intracellulare ATCC 13950]
          Length = 267

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 78  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 137

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +T  ++   +                 
Sbjct: 138 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 197

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++RP   V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 198 TAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 257

Query: 167 ELAYNQVEKI 176
           EL ++QV K+
Sbjct: 258 ELTFSQVSKL 267


>gi|149913528|ref|ZP_01902061.1| transcription antitermination protein NusG [Roseobacter sp.
           AzwK-3b]
 gi|149812648|gb|EDM72477.1| transcription antitermination protein NusG [Roseobacter sp.
           AzwK-3b]
          Length = 177

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EK+  E I   ++  GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKRIAEQIRQSVAEQGLEEEIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH +    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + +E+GERV V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHYEIGERVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRETPVELEFTQVTK 175


>gi|300022529|ref|YP_003755140.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524350|gb|ADJ22819.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 191

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/173 (54%), Positives = 124/173 (71%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  Y+N E+K  ++I  R    GLD L  EI +P+E VV V++GRK+ +ER+F PG
Sbjct: 17  RWYIVHAYTNFERKVADAIRERAKAGGLDDLFEEIVVPTEEVVEVKRGRKIPTERKFLPG 76

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K  MTD+ +  IK+TPKV GFLG    P P+ + E   I+NQV+  V+RP  ++ F
Sbjct: 77  YVLVKMKMTDQAFVMIKNTPKVTGFLGADNKPMPIPEDEALRILNQVKEGVERPRPTITF 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E+GE V V+DGPFASF G+V++VDEE+SRV V V IFGR TPVEL + QVEKI
Sbjct: 137 EIGENVKVADGPFASFTGVVEDVDEERSRVKVAVSIFGRPTPVELEFGQVEKI 189


>gi|51244964|ref|YP_064848.1| transcription antitermination protein NusG [Desulfotalea
           psychrophila LSv54]
 gi|50876001|emb|CAG35841.1| probable transcription antitermination protein NusG [Desulfotalea
           psychrophila LSv54]
          Length = 177

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/174 (41%), Positives = 112/174 (64%), Gaps = 1/174 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYI+Q +S  E+K   ++  R+ + GL+    +I +P+E+VV + KG +  S ++F
Sbjct: 1   MAKQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKF 60

Query: 61  FPGYVLIKAVMTDKVYH-TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGY+LI   +TD+ +H   ++ P+V+GF+G   NP P++D E   I+ +++   +RP  
Sbjct: 61  FPGYMLINMELTDETWHTVHENMPRVVGFVGDDRNPMPLSDEEAAKIIGRIQEGSERPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            V F+VGE V V DGPF++F G+V  V  +K RV V V IFGR TPVEL + QV
Sbjct: 121 KVIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174


>gi|319405861|emb|CBI79493.1| transcription antitermination protein [Bartonella sp. AR 15-3]
          Length = 182

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/175 (59%), Positives = 137/175 (78%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWYIVQVYSN EKK  E+I     + GLDHL  ++ +P+ERVV +R+GRKV+SER+FF
Sbjct: 8   AARWYIVQVYSNFEKKVAEAIDKEAKQKGLDHLFKKVFVPTERVVEIRRGRKVDSERKFF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+L+ A +TD+VYH IK+TPKV GFLG+   P P++D E E I+ QVE  V+ P SS+
Sbjct: 68  PGYILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVEEGVESPKSSM 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V V+DGPF SFNGIV+ V++E+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEKERSRLKVEVLIFGRPTPVDLEFDQVEKL 182


>gi|297537519|ref|YP_003673288.1| NusG antitermination factor [Methylotenera sp. 301]
 gi|297256866|gb|ADI28711.1| NusG antitermination factor [Methylotenera sp. 301]
          Length = 178

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/178 (42%), Positives = 118/178 (66%), Gaps = 1/178 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY VQ +S  EK   + +  R+ R+GL     +I +P E V+ ++ G+K  SER+ 
Sbjct: 1   MSMKWYAVQAFSGFEKSVQKGLEERIVRTGLQEQFGQILVPIEEVIEMKAGQKTISERKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  MTD+ +H +K TP+V  F+G   + P+P+ D E++ I+ +++ +   P  
Sbjct: 61  YPGYVLVQMAMTDESWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            + FE GE V + DGPF  F+G V++V+ EKS++HV VVIFGR TPVEL ++Q+EK V
Sbjct: 121 KLTFEKGESVRIVDGPFKDFSGNVEDVNYEKSKLHVSVVIFGRSTPVELEFSQIEKEV 178


>gi|319899061|ref|YP_004159154.1| transcription antitermination protein [Bartonella clarridgeiae 73]
 gi|319403025|emb|CBI76580.1| transcription antitermination protein [Bartonella clarridgeiae 73]
          Length = 182

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 105/175 (60%), Positives = 136/175 (77%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWYIVQ YSN EKK  E+I     + GLDHL  +I +P ERVV +R+GRKV+SER+FF
Sbjct: 8   AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPIERVVEIRRGRKVDSERKFF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+ A +TD+VYH IK+TPKV GFLG+   P P++D E+E I+ QV+  V+ P SS+
Sbjct: 68  PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVEAPKSSM 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+
Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182


>gi|153869595|ref|ZP_01999148.1| Transcription termination factor [Beggiatoa sp. PS]
 gi|152073936|gb|EDN70849.1| Transcription termination factor [Beggiatoa sp. PS]
          Length = 187

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 11/186 (5%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YSN EK    S+  R+  SGL     +I +P+E VV +R G    S+R+ 
Sbjct: 1   MALRWYVVHTYSNFEKAVKVSLEERIRHSGLHDKFGQILVPTEEVVEMRDGVTRKSDRKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
           +PGYVL++  M D+ +H +K+ PKV+GF+G G            +P+P++++E E I+ +
Sbjct: 61  YPGYVLVQMEMNDETWHIVKNVPKVMGFIGGGTAERKGKANQFFSPTPLSEAEAEAILQR 120

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           V+   ++P     FEVGE V V +GPF  FNG+V+ V+ EK+R+ V V IFGR TPVEL 
Sbjct: 121 VQEGSEKPRPKTLFEVGEVVRVKEGPFTDFNGVVEEVNYEKNRLRVAVRIFGRSTPVELE 180

Query: 170 YNQVEK 175
           + QVEK
Sbjct: 181 FGQVEK 186


>gi|124268640|ref|YP_001022644.1| transcription antitermination protein NusG [Methylibium
           petroleiphilum PM1]
 gi|124261415|gb|ABM96409.1| transcription antitermination protein nusG [Methylibium
           petroleiphilum PM1]
          Length = 192

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    ++  R+ R+G+      I +P+E VV ++ G+K  +ERRFFPG
Sbjct: 19  RWYVVHAYSGMEKAVERNLRERIDRAGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFPG 78

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++ +M D+ +H +K T KV GF+G     P+P++++E+  I++Q++  +++P   V 
Sbjct: 79  YVLVEMLMDDESWHLVKHTSKVTGFVGGAKNRPAPISEAEVMKIVHQMQEGIEKPRPKVE 138

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +EVGE V V +GPF  FNG ++ V+ +KS+V V V IFGR TPVEL +++VEK+
Sbjct: 139 WEVGELVRVKEGPFTDFNGAIEEVNYDKSKVRVSVTIFGRSTPVELDFHEVEKV 192


>gi|126737141|ref|ZP_01752876.1| transcription termination/antitermination factor NusG [Roseobacter
           sp. SK209-2-6]
 gi|126721726|gb|EBA18429.1| transcription termination/antitermination factor NusG [Roseobacter
           sp. SK209-2-6]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++  GL+  + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD+E  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175


>gi|118602793|ref|YP_904008.1| transcription antitermination protein nusG [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567732|gb|ABL02537.1| transcription antitermination protein nusG [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY++   S  E K   +I   + R GL+ LV E+ +P+E+VV ++ G+K  +ER+F
Sbjct: 1   MSKKWYVLHARSGFEAKVKIAIEESVIREGLEDLVGEVFVPTEQVVELKDGQKKTAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGY+L+   +T+  +  +K+T  VIGF+G+    PSP+T  E++ I+ +V+    +P  
Sbjct: 61  FPGYMLVNMELTEPSWLLVKNTNNVIGFIGSSSGKPSPITQREVDKILARVQEGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V ++ GE + V DGPF  FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK
Sbjct: 121 KVAYQPGEEILVVDGPFNEFNGLVQAVDYEKNFLKVEVLIFGRSTSVELEFSQVEK 176


>gi|94497192|ref|ZP_01303764.1| NusG antitermination factor [Sphingomonas sp. SKA58]
 gi|94423297|gb|EAT08326.1| NusG antitermination factor [Sphingomonas sp. SKA58]
          Length = 178

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 109/176 (61%), Gaps = 3/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  ESI     R GL  LV ++ +P+E V  V++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFESKVKESILAEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL K  M D +YH +K+TPKV GFLG+   P  +++ E        + A   P   
Sbjct: 60  MPGYVLAKLSMNDDIYHLVKNTPKVTGFLGSSGKPQAISEGEAARYFGAQKEAEAAPKHK 119

Query: 121 --VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             V +E+G+ V V DGPFASFNG+V+ +D EK+RV V V IFGR TPVEL + QVE
Sbjct: 120 VNVDYEIGDSVKVLDGPFASFNGVVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175


>gi|85706805|ref|ZP_01037896.1| transcription termination/antitermination factor NusG [Roseovarius
           sp. 217]
 gi|85668598|gb|EAQ23468.1| transcription termination/antitermination factor NusG [Roseovarius
           sp. 217]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +  +GL+  + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRQSVVENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175


>gi|322434556|ref|YP_004216768.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9]
 gi|321162283|gb|ADW67988.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 116/173 (67%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+  YS  E+K  ES+  R+    L + +  I IP+E V  +R G+K   ER F PG
Sbjct: 51  KWYIIHAYSGFERKVRESLESRIHAYNLQNRIGRIMIPTEPVTELRNGKKYTIERVFLPG 110

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  + + ++H IK+TP+V GFLGTG++P  +++ E+  I+ + + +  +P   + F
Sbjct: 111 YVLVEMELDNDLWHVIKNTPRVTGFLGTGDSPVALSEQEVSSILFRTDVSKDKPSMKIKF 170

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             GE+V +++GPFA+F+G+V +++E+K  + V V IFGR TPVE+ +++V+K+
Sbjct: 171 AKGEQVRINEGPFANFSGVVDDLNEDKQTLKVMVSIFGRSTPVEIEFSKVDKM 223


>gi|169630973|ref|YP_001704622.1| transcription antitermination protein NusG [Mycobacterium abscessus
           ATCC 19977]
 gi|169242940|emb|CAM63968.1| Transcription antitermination protein NusG [Mycobacterium
           abscessus]
          Length = 264

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 22/194 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + +I +P+E V  ++ G++    R+  PGY
Sbjct: 71  WYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNGQRKQVNRKVLPGY 130

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +                 
Sbjct: 131 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQAPAKKPAKGAASAD 190

Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                +     ++RPV  V FEVGE V V+DGPFA+    +  V+ E+ R+ V V IFGR
Sbjct: 191 AATASSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASISEVNAEQQRLKVLVSIFGR 250

Query: 163 VTPVELAYNQVEKI 176
            TPVEL + QVEK+
Sbjct: 251 ETPVELNFTQVEKL 264


>gi|315122750|ref|YP_004063239.1| transcription antitermination protein NusG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|289546834|gb|ADD10127.1| transcription antitermination protein NusG [Candidatus Liberibacter
           solanacearum]
 gi|313496152|gb|ADR52751.1| transcription antitermination protein NusG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 142/177 (80%), Positives = 167/177 (94%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT  WYIVQVYSNCEKK VES+ GRL+R+GLD+LVTEIT+PSE+VVSVR+GRKVNSERRF
Sbjct: 1   MTSHWYIVQVYSNCEKKTVESMLGRLNRAGLDNLVTEITVPSEKVVSVRRGRKVNSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL+KAVMTD+VYHTI++TPKV+GFLG+G+NPSPV+DSEIEHIM Q+EA+V +PVS+
Sbjct: 61  FPGYVLLKAVMTDEVYHTIRNTPKVMGFLGSGKNPSPVSDSEIEHIMGQIEASVHKPVST 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FE+GER+CVSDGPFASFNGIVK+VDEEKSR+ VEV IFGR TPVELAY+QVEKIV
Sbjct: 121 IIFEIGERICVSDGPFASFNGIVKDVDEEKSRLKVEVSIFGRATPVELAYSQVEKIV 177


>gi|320161301|ref|YP_004174525.1| transcription antitermination protein NusG [Anaerolinea thermophila
           UNI-1]
 gi|319995154|dbj|BAJ63925.1| transcription antitermination protein NusG [Anaerolinea thermophila
           UNI-1]
          Length = 226

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/171 (38%), Positives = 105/171 (61%), Gaps = 3/171 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K   ++  R+   G+   + ++ IP++  + V+ G++   ER  FPGY
Sbjct: 58  WYVVHCYSGYENKVRHNLEQRIETMGMKDKIFDVVIPTQEEIEVKDGKRRTVERHVFPGY 117

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+  +MT++ ++ +++TP V GF+G  + P+P+   E+  I+ ++E   + P   V F+
Sbjct: 118 VLVNMIMTEESWYVVRNTPGVTGFVG-MDQPTPLRPEEVAQILKRME--AEAPRVKVTFK 174

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           VGERV + DGPF  F G V  +D E+++V V V  FGR TPVEL + QVEK
Sbjct: 175 VGERVRIVDGPFNDFRGTVSEIDMERNKVRVMVNFFGRETPVELDFLQVEK 225


>gi|296137526|ref|YP_003644768.1| NusG antitermination factor [Thiomonas intermedia K12]
 gi|295797648|gb|ADG32438.1| NusG antitermination factor [Thiomonas intermedia K12]
          Length = 187

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  EK    ++  R+ R+G+      I +P+E VV ++ G K  +ERRFFP
Sbjct: 13  KQWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFP 72

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K T KV GF+G     P P++++++  IM+Q++    +P   V
Sbjct: 73  GYVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKV 132

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V + +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++
Sbjct: 133 QFEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 187


>gi|297183429|gb|ADI19562.1| transcription antiterminator [uncultured gamma proteobacterium
           HF0770_27E13]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++QVYSN EKK +  +  R  + GL     +I +P+E +V ++ G+K  SER++
Sbjct: 1   MEYQWYVLQVYSNYEKKVLTMLEDRSKQLGLSEQFADIVVPTEEIVEMKGGQKKTSERKY 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+   + D+ +H +   P V+GF+G   E P+P++D E+  I+N+ E A   P  
Sbjct: 61  FPGYVLVNMNLNDETWHFVNSIPNVMGFIGGTSEKPAPISDREVMIILNKAEDAANAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              ++ GE V V +GPF  FNG+V+ V+ EKS++ V V I GR TPVEL +NQVEK
Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKSKLFVAVQILGRATPVELNFNQVEK 176


>gi|91790280|ref|YP_551232.1| transcription antitermination protein nusG [Polaromonas sp. JS666]
 gi|91699505|gb|ABE46334.1| transcription antitermination protein nusG [Polaromonas sp. JS666]
          Length = 199

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  EK    +I  R++R+G+        +P+E VV ++ G+K  +ERRFFP
Sbjct: 25  MQWYVVHAYSGMEKAVERNILERINRAGMQAKFGRFLVPTEEVVEIKNGQKKTTERRFFP 84

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D+ +H +K T KV GF+G     P+P+++ +++ I++Q++   ++P   V
Sbjct: 85  GYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEDVQKIVSQMQVGTEKPRHKV 144

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPF  FNG V+ V+ +K++V V V IFGR TPVEL ++Q+EK
Sbjct: 145 EFETGEYVRVKDGPFTDFNGTVEEVNYDKNKVRVSVTIFGRATPVELEFSQIEK 198


>gi|262197203|ref|YP_003268412.1| NusG antitermination factor [Haliangium ochraceum DSM 14365]
 gi|262080550|gb|ACY16519.1| NusG antitermination factor [Haliangium ochraceum DSM 14365]
          Length = 189

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/172 (43%), Positives = 106/172 (61%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  ++  E++  E++  R    G    + EI +P+  V+ V KG++  S ++FFPG
Sbjct: 18  KWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPG 77

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ ++   TD VYH I++TPKV GF+G G  P PV +SEI  I N +     +P   V F
Sbjct: 78  YIFVQMEFTDSVYHLIRNTPKVTGFVG-GNTPQPVPESEISVIHNTMSDNHSKPRPKVMF 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V+DGPFASF   V+ V  +K ++ V V IFGR TPVEL + QVEK
Sbjct: 137 EQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEK 188


>gi|329118708|ref|ZP_08247408.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465143|gb|EGF11428.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++Q YS  EK   +++  R+ R  ++    EI +P E VV ++ GR+  SER+F
Sbjct: 1   MAKQWYVIQAYSGFEKNVQKTLKERIIRENMEQYFGEILVPVEEVVDIKNGRRTVSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M+D  +H +K TP+V GF+G     P P++  E+E IM QV+   ++P  
Sbjct: 61  FPGYVLVEMEMSDDSWHLVKSTPRVSGFVGGVANRPLPISQKEVETIMAQVQVDGEKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE+G+RV V++GPFA FNGIV+ V+ E++++ V V IFGR TPVEL + QVEK
Sbjct: 121 RVSFEIGQRVRVNEGPFADFNGIVEEVNYERNKLRVSVQIFGRETPVELEFGQVEK 176


>gi|84685454|ref|ZP_01013352.1| transcription termination/antitermination factor NusG
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84666611|gb|EAQ13083.1| transcription termination/antitermination factor NusG
           [Rhodobacterales bacterium HTCC2654]
          Length = 177

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIKTSVAEAGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH +    +V GFLG    P P+ D+E+E I+ +VE  V+ P + 
Sbjct: 61  MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVEEGVEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL Y QV K
Sbjct: 121 ITFEIGEKVAVTDGPFEGFDGMVEGVDEDNQRLKVSVSIFGRATPVELEYTQVSK 175


>gi|15607779|ref|NP_215153.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis H37Rv]
 gi|15840042|ref|NP_335079.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis CDC1551]
 gi|31791823|ref|NP_854316.1| transcription antitermination protein NusG [Mycobacterium bovis
           AF2122/97]
 gi|121636560|ref|YP_976783.1| transcription antitermination protein NusG [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660413|ref|YP_001281936.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis H37Ra]
 gi|148821843|ref|YP_001286597.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis F11]
 gi|167969069|ref|ZP_02551346.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis H37Ra]
 gi|215402414|ref|ZP_03414595.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis 02_1987]
 gi|215410186|ref|ZP_03418994.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215429474|ref|ZP_03427393.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis EAS054]
 gi|215444758|ref|ZP_03431510.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis T85]
 gi|218752287|ref|ZP_03531083.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis GM 1503]
 gi|219556483|ref|ZP_03535559.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis T17]
 gi|224989032|ref|YP_002643719.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253797579|ref|YP_003030580.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230970|ref|ZP_04924297.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis C]
 gi|254363593|ref|ZP_04979639.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549599|ref|ZP_05140046.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185520|ref|ZP_05762994.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199646|ref|ZP_05767137.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis T46]
 gi|260203809|ref|ZP_05771300.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis K85]
 gi|289442033|ref|ZP_06431777.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T46]
 gi|289446196|ref|ZP_06435940.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552893|ref|ZP_06442103.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis KZN 605]
 gi|289568578|ref|ZP_06448805.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T17]
 gi|289573243|ref|ZP_06453470.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis K85]
 gi|289744357|ref|ZP_06503735.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis 02_1987]
 gi|289752683|ref|ZP_06512061.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis EAS054]
 gi|289756723|ref|ZP_06516101.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T85]
 gi|289760764|ref|ZP_06520142.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis GM 1503]
 gi|294996157|ref|ZP_06801848.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis 210]
 gi|297633137|ref|ZP_06950917.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730117|ref|ZP_06959235.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis KZN R506]
 gi|298524131|ref|ZP_07011540.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306774749|ref|ZP_07413086.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu001]
 gi|306781520|ref|ZP_07419857.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu002]
 gi|306783287|ref|ZP_07421609.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu003]
 gi|306787656|ref|ZP_07425978.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu004]
 gi|306794423|ref|ZP_07432725.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu005]
 gi|306796392|ref|ZP_07434694.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu006]
 gi|306966660|ref|ZP_07479321.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu009]
 gi|306970853|ref|ZP_07483514.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu010]
 gi|307078578|ref|ZP_07487748.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu011]
 gi|307083142|ref|ZP_07492255.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu012]
 gi|313657444|ref|ZP_07814324.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis KZN V2475]
 gi|54037928|sp|P65590|NUSG_MYCBO RecName: Full=Transcription antitermination protein nusG
 gi|54041678|sp|P65589|NUSG_MYCTU RecName: Full=Transcription antitermination protein nusG
 gi|1877377|emb|CAB07098.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium
           tuberculosis H37Rv]
 gi|13880188|gb|AAK44893.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis CDC1551]
 gi|31617410|emb|CAD93520.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium
           bovis AF2122/97]
 gi|121492207|emb|CAL70674.1| Probable transcription antitermination protein nusG [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124600029|gb|EAY59039.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis C]
 gi|134149107|gb|EBA41152.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504565|gb|ABQ72374.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis H37Ra]
 gi|148720370|gb|ABR04995.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis F11]
 gi|224772145|dbj|BAH24951.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319082|gb|ACT23685.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414952|gb|EFD12192.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T46]
 gi|289419154|gb|EFD16355.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437525|gb|EFD20018.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis KZN 605]
 gi|289537674|gb|EFD42252.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis K85]
 gi|289542332|gb|EFD45980.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T17]
 gi|289684885|gb|EFD52373.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis 02_1987]
 gi|289693270|gb|EFD60699.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis EAS054]
 gi|289708270|gb|EFD72286.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis GM 1503]
 gi|289712287|gb|EFD76299.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T85]
 gi|298493925|gb|EFI29219.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216642|gb|EFO76041.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu001]
 gi|308325691|gb|EFP14542.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu002]
 gi|308331948|gb|EFP20799.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu003]
 gi|308335733|gb|EFP24584.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu004]
 gi|308337311|gb|EFP26162.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu005]
 gi|308343169|gb|EFP32020.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu006]
 gi|308355683|gb|EFP44534.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu009]
 gi|308359638|gb|EFP48489.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu010]
 gi|308363494|gb|EFP52345.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu011]
 gi|308367148|gb|EFP55999.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu012]
 gi|323720996|gb|EGB30061.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905138|gb|EGE52071.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis W-148]
 gi|328457360|gb|AEB02783.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis KZN 4207]
          Length = 238

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 49  WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +   ++   +                 
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++RPV  V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228

Query: 167 ELAYNQVEKI 176
           EL + QV KI
Sbjct: 229 ELTFGQVSKI 238


>gi|168830297|gb|ACA34394.1| NusG [uncultured bacterium pTW2]
          Length = 200

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/183 (42%), Positives = 118/183 (64%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+ R+G++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 17  KRWYVVHAYSGFEKSVAQALRDRIVRTGMEDRFGDVMVPTEEVIEMRAGQKRRSERKFFP 76

Query: 63  GYVLIKA---------VMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           +  + +H IK+TPKV+GF+G   + P P+ D E   I+++V+ 
Sbjct: 77  GYVLVQIVTHDEGGIPRIDSESWHLIKETPKVMGFIGGTADKPLPIRDDEAAAILDRVQE 136

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V DGPF  FNG+V+ V+ +KSR+ V V+IFGR TPVEL + Q
Sbjct: 137 GVEKPRPKVLFEAGQMVRVVDGPFNDFNGVVEEVNYDKSRLRVAVLIFGRSTPVELEFGQ 196

Query: 173 VEK 175
           VEK
Sbjct: 197 VEK 199


>gi|294341871|emb|CAZ90300.1| Transcription antitermination protein nusG [Thiomonas sp. 3As]
          Length = 189

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  EK    ++  R+ R+G+      I +P+E VV ++ G K  +ERRFFP
Sbjct: 15  KQWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFP 74

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K T KV GF+G     P P++++++  IM+Q++    +P   V
Sbjct: 75  GYVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKV 134

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V + +GPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++
Sbjct: 135 QFEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 189


>gi|317485864|ref|ZP_07944726.1| transcription termination/antitermination factor NusG [Bilophila
           wadsworthia 3_1_6]
 gi|316922879|gb|EFV44103.1| transcription termination/antitermination factor NusG [Bilophila
           wadsworthia 3_1_6]
          Length = 229

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
           RWYIV  YS  E++   +I   +  +  + L+ E+ +P+E+V+ + + G K  + R+F+P
Sbjct: 56  RWYIVHTYSGFEQRVEATIKEMMRNAQDNGLIHEVVVPTEKVIELGKGGAKRTTTRKFYP 115

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY++++  MTD  +H ++  PKV GF+G    P+P+ D E   I++ +E   ++P     
Sbjct: 116 GYIMLRMTMTDFSWHLVQSIPKVTGFVGGKNRPAPMKDEEAARILSLMETRQEQPRPKFS 175

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 176 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 228


>gi|299541913|ref|ZP_07052236.1| transcription antitermination protein NusG [Lysinibacillus
           fusiformis ZC1]
 gi|298725651|gb|EFI66292.1| transcription antitermination protein NusG [Lysinibacillus
           fusiformis ZC1]
          Length = 177

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E +   ++  R+   G+   +  + +P      ++ G+K    R+ 
Sbjct: 1   MEKNWYVVHTYSGYENRVKANLEKRVETMGMQDKIFRVIVPEHEETEMKDGKKRTMMRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD  ++ +++TP V GF+   G G  P+P+   E + ++ Q+    +  
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQMGMTDKVV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V   VGE V V +GPFA F G V+ +D EK ++ V V +FGR T +EL + QV+K+
Sbjct: 121 --EVDITVGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVTVDMFGRETIMELDFEQVQKL 177


>gi|160871908|ref|ZP_02062040.1| transcription termination/antitermination factor NusG
           [Rickettsiella grylli]
 gi|159120707|gb|EDP46045.1| transcription termination/antitermination factor NusG
           [Rickettsiella grylli]
          Length = 215

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/175 (41%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+VQV S  E+K ++++  R+ ++ L     +I +P+E V+ +R+GRK  + R+F+
Sbjct: 40  SKQWYVVQVRSGYERKVLDALNERIKQNDLTEKFGQIIVPTEEVIEIRQGRKRKTARKFY 99

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL++  M +  ++ ++ TP VI F+G   + P P+ + E+  I+ +++  V +P   
Sbjct: 100 PGYVLVEMDMGEDSWYLVQKTPGVIKFIGGTSDKPVPLGEREVSKILQRMQEGVDKPRPK 159

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FEVGE V V DGPFA FNG V+ V+ EK+R+ V V+IFGR TPVEL + QV+K
Sbjct: 160 VLFEVGEVVRVVDGPFADFNGEVEEVNYEKNRLRVSVIIFGRSTPVELEFGQVKK 214


>gi|206602630|gb|EDZ39111.1| Transcription antitermination protein (NusG) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 184

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 103/174 (59%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  Y+  E +   SI  R+    L  +V ++ +P + V  +++G+K  S R+ FP
Sbjct: 11  KKWYVIHTYAGFENRVKTSIEERVILKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++   T++    I  TPKV GFLG G  P P+++ E+  + +++E+    P  S  
Sbjct: 71  GYVLVEMEPTEEAIQFILSTPKVTGFLGNGTTPIPMSNREVSELFDRIESGTAMPSPSQH 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F   E V ++DGPF  F+G++  VD +  ++ V V IFGR TPVEL + QVE++
Sbjct: 131 FSEAETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184


>gi|304321357|ref|YP_003855000.1| transcription antitermination protein NusG [Parvularcula
           bermudensis HTCC2503]
 gi|303300259|gb|ADM09858.1| transcription antitermination protein NusG [Parvularcula
           bermudensis HTCC2503]
          Length = 178

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYIV  YSN EKK  E+I       GL HL  E+ +P+E VV +R+GRK+N+ERR+
Sbjct: 1   MDAKWYIVNAYSNFEKKVAEAIKQSAEEKGLSHLFEEVLVPTEEVVEIRRGRKINTERRY 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119
           FPGYVL+K VM D+ +H +  T KV GFLG+G+ P PV+  E++ I+  ++   Q P   
Sbjct: 61  FPGYVLVKMVMNDQSFHVVNSTSKVTGFLGSGKKPIPVSQKEVDRILGTMDEQEQVPAKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           ++ +++GE V V DGPFASF+G+V+++DEE +R+ V V IFGR TPVEL Y+QV+K
Sbjct: 121 AILYDIGETVKVVDGPFASFSGVVEDIDEENARLKVSVSIFGRATPVELEYSQVDK 176


>gi|239813602|ref|YP_002942512.1| NusG antitermination factor [Variovorax paradoxus S110]
 gi|239800179|gb|ACS17246.1| NusG antitermination factor [Variovorax paradoxus S110]
          Length = 203

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 116/173 (67%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    +I  R++R+G+      I +P+E VV ++ G+K  +ERRFFPG
Sbjct: 30  RWYVVHAYSGMEKAVERNIIERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++ +M D+ +H +K T KV GF+G     P+P++  E+E I++Q++   ++P   V 
Sbjct: 90  YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEGIVSQMQQGTEKPRHKVE 149

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V+ V+ EKS+V V V+IFGR TPVEL ++QVEK
Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEEVNYEKSKVSVSVMIFGRATPVELEFSQVEK 202


>gi|257054435|ref|YP_003132267.1| transcription antitermination protein nusG [Saccharomonospora
           viridis DSM 43017]
 gi|256584307|gb|ACU95440.1| transcription antitermination protein nusG [Saccharomonospora
           viridis DSM 43017]
          Length = 267

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 15/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E +   +I  R     ++  + ++ +P+E V  ++ G++   +R+  PGY
Sbjct: 81  WYVVHSYAGYENRVKSNIETRRQTLDVEDYIFQVEVPTEEVTEIKNGQRKIVQRKVLPGY 140

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------Q 109
           +L++  M D  +  +++TP V GF+G    PSP++  E+   +                 
Sbjct: 141 ILVRMEMNDASWSAVRNTPGVTGFVGATSRPSPLSLDEVVKFLAPKVEKAAPAKAKGEPA 200

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            E  V      V FEVGE V V DGPFA+    +  V+ +  ++ V V IFGR TPVEL+
Sbjct: 201 AEEQVAAGPVEVDFEVGESVTVMDGPFATLPATISEVNVDAQKLKVLVSIFGRETPVELS 260

Query: 170 YNQVEKI 176
           +NQV KI
Sbjct: 261 FNQVSKI 267


>gi|119947054|ref|YP_944734.1| NusG antitermination factor [Psychromonas ingrahamii 37]
 gi|119865658|gb|ABM05135.1| transcription antitermination protein nusG [Psychromonas ingrahamii
           37]
          Length = 183

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 113/174 (64%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +++   +  + ++    +I +P+E VV +R G+K  SER+FFP
Sbjct: 8   KRWYVVQAFSGYEGRVQKTLLEYIKLNEMEDYFGQILVPTEEVVEMRAGQKRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K   +V+GF+G   E P+P++  E+++I+N+++ +   P    
Sbjct: 68  GYVLVEMAMNDDSWHLVKSIDRVMGFIGGSKERPAPISQKEVDNILNRLQESHDSPRPRT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE G+ V V++GPF  F G V+ VD EKSR+ V V IFGR TPV+L ++QVEK
Sbjct: 128 LFEAGQIVRVTEGPFVDFTGTVEKVDYEKSRLKVSVSIFGRATPVDLDFSQVEK 181


>gi|77165799|ref|YP_344324.1| transcription antitermination protein NusG [Nitrosococcus oceani
           ATCC 19707]
 gi|254433234|ref|ZP_05046742.1| transcription termination/antitermination factor NusG
           [Nitrosococcus oceani AFC27]
 gi|76884113|gb|ABA58794.1| transcription antitermination protein nusG [Nitrosococcus oceani
           ATCC 19707]
 gi|207089567|gb|EDZ66838.1| transcription termination/antitermination factor NusG
           [Nitrosococcus oceani AFC27]
          Length = 177

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ +S  E++   SI  R+ R GL     +I +P+E VV +R+G+K  SER+F
Sbjct: 1   MAKRWYVVQAFSGFEQQVKRSIEERVRRYGLQESFGDILVPTEEVVEMREGQKRKSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL++  M D+ +H +KD P+V+GF+G   + P+ +T++E E I+ ++    ++P  
Sbjct: 61  FPGYVLVQMEMGDETWHLVKDVPRVLGFIGGTSDKPAAITEAEAEEILERIREGAEQPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V FE GE V V +GPF  FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK
Sbjct: 121 KVLFEPGEMVRVIEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176


>gi|254477580|ref|ZP_05090966.1| transcription termination/antitermination factor NusG [Ruegeria sp.
           R11]
 gi|214031823|gb|EEB72658.1| transcription termination/antitermination factor NusG [Ruegeria sp.
           R11]
          Length = 177

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++  GL+  + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEHGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD+E  ++ V V IFGR TPVEL + QV K
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175


>gi|41410209|ref|NP_963045.1| transcription antitermination protein NusG [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118466107|ref|YP_883656.1| transcription antitermination protein NusG [Mycobacterium avium
           104]
 gi|254776958|ref|ZP_05218474.1| transcription antitermination protein NusG [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|41399043|gb|AAS06661.1| NusG [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167394|gb|ABK68291.1| transcription termination/antitermination factor NusG
           [Mycobacterium avium 104]
          Length = 256

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 67  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 126

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS ++  ++   +                 
Sbjct: 127 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGATKKVAKGAASTA 186

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++RP   V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 187 AAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 246

Query: 167 ELAYNQVEKI 176
           EL ++QV K+
Sbjct: 247 ELTFSQVSKL 256


>gi|84515191|ref|ZP_01002554.1| transcription termination/antitermination factor NusG [Loktanella
           vestfoldensis SKA53]
 gi|84511350|gb|EAQ07804.1| transcription termination/antitermination factor NusG [Loktanella
           vestfoldensis SKA53]
          Length = 176

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 112/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E+I  +    GL   + E+ +P+E V+ VR+ +KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEAIRAKAEEKGLSDQIDEVLVPTEEVIEVRRNKKVTTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +V+     P + 
Sbjct: 61  MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDSPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V V+DGPF  F+G+V+ VDEE  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEYVDEEHQRLKVTVSIFGRATPVELEFTQVSK 175


>gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|38195603|gb|AAR13466.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|254039825|gb|ACT56621.1| transcription antitermination protein NusG [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|255957547|dbj|BAH96610.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957843|dbj|BAH96817.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957853|dbj|BAH96826.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957863|dbj|BAH96835.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957873|dbj|BAH96844.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957883|dbj|BAH96853.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957893|dbj|BAH96862.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957903|dbj|BAH96871.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957913|dbj|BAH96880.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957923|dbj|BAH96889.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957933|dbj|BAH96898.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957943|dbj|BAH96907.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957953|dbj|BAH96916.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957963|dbj|BAH96925.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957973|dbj|BAH96934.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957983|dbj|BAH96943.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255957993|dbj|BAH96952.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958003|dbj|BAH96961.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958013|dbj|BAH96970.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958023|dbj|BAH96979.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958033|dbj|BAH96988.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958043|dbj|BAH96997.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958053|dbj|BAH97006.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958063|dbj|BAH97015.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958073|dbj|BAH97024.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958083|dbj|BAH97033.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958093|dbj|BAH97042.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958103|dbj|BAH97051.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958113|dbj|BAH97060.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|255958123|dbj|BAH97069.1| transcription antitermination component [Candidatus Liberibacter
           asiaticus]
 gi|283362133|dbj|BAI65920.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362143|dbj|BAI65929.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362153|dbj|BAI65938.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362163|dbj|BAI65947.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362173|dbj|BAI65956.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362183|dbj|BAI65965.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362193|dbj|BAI65974.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362203|dbj|BAI65983.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362213|dbj|BAI65992.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362223|dbj|BAI66001.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|283362233|dbj|BAI66010.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
          Length = 177

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF
Sbjct: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS
Sbjct: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177


>gi|313635074|gb|EFS01424.1| transcription termination/antitermination factor NusG [Listeria
           seeligeri FSL N1-067]
          Length = 177

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEIKNGKTKTIKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E + I+  +    +R 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+GE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EKI
Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177


>gi|299137913|ref|ZP_07031093.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8]
 gi|298599843|gb|EFI56001.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8]
          Length = 217

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/172 (38%), Positives = 114/172 (66%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+  YS  E+K  ES+  R++   L+  V  I IP+E    +R G+K   +R F PG
Sbjct: 43  KWYIIHAYSGFERKVKESLQSRVAAYHLEDRVGRIEIPTEPTTELRNGKKYTIDRVFLPG 102

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV ++  + + ++H +K+TP+V GFL TG+ P+ ++++E+  ++N+ +A  ++P   + F
Sbjct: 103 YVFVEMALDNDLWHVVKNTPRVTGFLQTGDQPNALSEAEVNAMLNRSDATKEKPKLKMKF 162

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             GE+V +++GPFA+FNG V +++E+K  + V V IFGR TP E++++ VEK
Sbjct: 163 SKGEQVRITEGPFANFNGAVDDINEDKQTLKVMVSIFGRPTPTEVSFSNVEK 214


>gi|145588230|ref|YP_001154827.1| NusG antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046636|gb|ABP33263.1| transcription antitermination protein nusG [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 190

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++  YS  EK   + +  R++RSG+      I +PSE VV ++ G K  +ERRFFP
Sbjct: 16  MRWYVIHAYSGMEKSVKKGLEERIARSGMPEKFGRILVPSEEVVEIKSGAKSVTERRFFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  MTD+ +H +K+TPKV GF+G     PSP++ +E+  IM+Q++A V +P    
Sbjct: 76  GYVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVAKIMDQMQAGVDKPKPKT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V +GPF  FNG ++ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 136 LFEVGEIVRVKEGPFVDFNGNIEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEKM 190


>gi|319791330|ref|YP_004152970.1| nusg antitermination factor [Variovorax paradoxus EPS]
 gi|315593793|gb|ADU34859.1| NusG antitermination factor [Variovorax paradoxus EPS]
          Length = 203

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    +I  R++R+G+      I +P+E VV ++ G+K  +ERRFFPG
Sbjct: 30  RWYVVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++ +M D+ +H +K T KV GF+G     P+P++  E+E I++Q++   ++P   V 
Sbjct: 90  YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEDIVSQMQQGTEKPRHKVE 149

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V++V+ EKS+V V V+IFGR TPVEL ++QVEK
Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEDVNYEKSKVSVSVMIFGRSTPVELEFSQVEK 202


>gi|296395107|ref|YP_003659991.1| NusG antitermination factor [Segniliparus rotundus DSM 44985]
 gi|296182254|gb|ADG99160.1| NusG antitermination factor [Segniliparus rotundus DSM 44985]
          Length = 258

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 16/189 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++  R+    +   + +I +P+E V  V+ G++    R+  PG
Sbjct: 70  KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 129

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----- 118
           Y+L++  + D+ + T+++TP V GF+GT        +  ++ ++ + E            
Sbjct: 130 YILVRMDLNDESWSTVRNTPGVTGFVGTSRPTPLALNDVVKFLLPRQEPKKAAAAAKTKQ 189

Query: 119 -----------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                      + V ++VGE V V+DGPFA+    +  ++ E+ ++ V V IFGR TPVE
Sbjct: 190 GDGFAAAIASVTEVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPVE 249

Query: 168 LAYNQVEKI 176
           L++NQV KI
Sbjct: 250 LSFNQVTKI 258


>gi|289424853|ref|ZP_06426635.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes SK187]
 gi|289427697|ref|ZP_06429409.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes J165]
 gi|295131414|ref|YP_003582077.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes SK137]
 gi|289154816|gb|EFD03499.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes SK187]
 gi|289159188|gb|EFD07380.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes J165]
 gi|291377288|gb|ADE01143.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes SK137]
 gi|313763077|gb|EFS34441.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL013PA1]
 gi|313773029|gb|EFS38995.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL074PA1]
 gi|313794084|gb|EFS42106.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL110PA1]
 gi|313802424|gb|EFS43649.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL110PA2]
 gi|313807843|gb|EFS46327.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL087PA2]
 gi|313812044|gb|EFS49758.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL083PA1]
 gi|313816875|gb|EFS54589.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL059PA1]
 gi|313819205|gb|EFS56919.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL046PA2]
 gi|313819756|gb|EFS57470.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL036PA1]
 gi|313823873|gb|EFS61587.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL036PA2]
 gi|313827234|gb|EFS64948.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL063PA1]
 gi|313828436|gb|EFS66150.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL063PA2]
 gi|313831107|gb|EFS68821.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL007PA1]
 gi|313833490|gb|EFS71204.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL056PA1]
 gi|313838124|gb|EFS75838.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL086PA1]
 gi|314914564|gb|EFS78395.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL005PA4]
 gi|314919192|gb|EFS83023.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL050PA1]
 gi|314920626|gb|EFS84457.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL050PA3]
 gi|314925735|gb|EFS89566.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL036PA3]
 gi|314931464|gb|EFS95295.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL067PA1]
 gi|314957024|gb|EFT01130.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL027PA1]
 gi|314957838|gb|EFT01941.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL002PA1]
 gi|314960679|gb|EFT04780.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL002PA2]
 gi|314963365|gb|EFT07465.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL082PA1]
 gi|314969740|gb|EFT13838.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL037PA1]
 gi|314974289|gb|EFT18385.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL053PA1]
 gi|314976940|gb|EFT21035.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL045PA1]
 gi|314979899|gb|EFT23993.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL072PA2]
 gi|314985803|gb|EFT29895.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL005PA1]
 gi|314988414|gb|EFT32505.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL005PA2]
 gi|314988838|gb|EFT32929.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL005PA3]
 gi|315077100|gb|EFT49175.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL053PA2]
 gi|315079791|gb|EFT51767.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL078PA1]
 gi|315084901|gb|EFT56877.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL027PA2]
 gi|315087231|gb|EFT59207.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL002PA3]
 gi|315088964|gb|EFT60940.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL072PA1]
 gi|315096811|gb|EFT68787.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL038PA1]
 gi|315100103|gb|EFT72079.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL059PA2]
 gi|315100572|gb|EFT72548.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL046PA1]
 gi|315109344|gb|EFT81320.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL030PA2]
 gi|327325647|gb|EGE67445.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL096PA2]
 gi|327328241|gb|EGE70008.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL096PA3]
 gi|327445317|gb|EGE91971.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL043PA1]
 gi|327446958|gb|EGE93612.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL043PA2]
 gi|327449046|gb|EGE95700.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL013PA2]
 gi|327451392|gb|EGE98046.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL092PA1]
 gi|327452608|gb|EGE99262.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL087PA3]
 gi|327457651|gb|EGF04306.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL083PA2]
 gi|328751908|gb|EGF65524.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL087PA1]
 gi|328756946|gb|EGF70562.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL020PA1]
 gi|328759041|gb|EGF72657.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL025PA2]
 gi|328762258|gb|EGF75750.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL099PA1]
          Length = 303

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKTS 237

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    R+   V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 298 NQIEKI 303


>gi|308375217|ref|ZP_07443128.2| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu007]
 gi|308376463|ref|ZP_07438920.2| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu008]
 gi|308347108|gb|EFP35959.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu007]
 gi|308351051|gb|EFP39902.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis SUMu008]
          Length = 241

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 52  WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 111

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +   ++   +                 
Sbjct: 112 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 171

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++RPV  V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 172 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 231

Query: 167 ELAYNQVEKI 176
           EL + QV KI
Sbjct: 232 ELTFGQVSKI 241


>gi|302036653|ref|YP_003796975.1| transcription termination/antitermination protein NusG [Candidatus
           Nitrospira defluvii]
 gi|300604717|emb|CBK41049.1| Transcription termination/antitermination protein NusG [Candidatus
           Nitrospira defluvii]
          Length = 179

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 3/179 (1%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+   WY++  Y+  E +   S+  R S+ GL   + ++ +P+E V+ ++ G++  S R+
Sbjct: 1   MSNKNWYVIHTYAGFEGRVKTSLLERASQMGLTERLGQVLVPTEDVIEIKDGKRRTSRRK 60

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FFPGYVLI+    + D+    IK+TPKV GF+G G  P+P++  E++ ++ QV+A    P
Sbjct: 61  FFPGYVLIELEAPLADETLQMIKETPKVTGFVGGGAQPTPLSSEEVDSLLKQVDAGAAGP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V F  G+ V + DGPF  FNG V +VD + SRV V V IFGR TPVEL + QVE+I
Sbjct: 121 REQVRFIKGDNVRIVDGPFLGFNGAVDDVDADHSRVKVFVSIFGRSTPVELGFLQVERI 179


>gi|282855233|ref|ZP_06264565.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes J139]
 gi|282581821|gb|EFB87206.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes J139]
 gi|314983092|gb|EFT27184.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL110PA3]
 gi|315090636|gb|EFT62612.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL110PA4]
          Length = 303

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVIKMLTPSVLARVSRENADKAP 237

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    R+   V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 298 NQIEKI 303


>gi|327333165|gb|EGE74892.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL097PA1]
          Length = 303

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKTP 237

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    R+   V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 298 NQIEKI 303


>gi|50843343|ref|YP_056570.1| transcription antitermination protein NusG [Propionibacterium acnes
           KPA171202]
 gi|50840945|gb|AAT83612.1| transcription antitermination protein NusG [Propionibacterium acnes
           KPA171202]
 gi|315106013|gb|EFT77989.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL030PA1]
          Length = 303

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKTS 237

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    R+   V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 298 NQIEKI 303


>gi|325003301|ref|ZP_08124413.1| NusG antitermination factor [Pseudonocardia sp. P1]
          Length = 308

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R     ++  + ++ +P+E V  ++ G++   +R+  PGY
Sbjct: 118 WYVVHSYAGYENKVKSNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKKVQRKVLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +     A ++        
Sbjct: 178 ILVRMELNDQSWGAVRNTPGVTGFVGATSKPSPLTVNEVVKFLLPKTEAPKKEAEAGKPA 237

Query: 120 --------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                          V FEVGE V V DGPFA+    +  V+ +  ++ V V IFGR TP
Sbjct: 238 AAGAAATTGGSSTVEVDFEVGESVTVMDGPFATLPASISEVNIDAQKLKVLVSIFGRETP 297

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 298 VELGFNQVSKI 308


>gi|222152115|ref|YP_002561275.1| transcription antitermination factor [Macrococcus caseolyticus
           JCSC5402]
 gi|222121244|dbj|BAH18579.1| transcription antitermination factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 181

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY V  YS  E K  +++  RL    +   +  + IP E   +++ G+K  S ++ FP
Sbjct: 7   KHWYAVHTYSGYENKVKDNLEKRLESMNMQDQIFRVVIPEEEETTIKDGKKKTSLKKTFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E + I+  +    +    
Sbjct: 67  GYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEAKFILKSMGMNEK--TI 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V  E+GE+V V+ GPF +  G VK +D EK ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 DVEIELGEQVRVTSGPFTNQVGEVKEIDAEKYKLTVLVDMFGRETPVEVEFDQIEKL 181


>gi|258651255|ref|YP_003200411.1| NusG antitermination factor [Nakamurella multipartita DSM 44233]
 gi|258554480|gb|ACV77422.1| NusG antitermination factor [Nakamurella multipartita DSM 44233]
          Length = 306

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 11/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    ++  + +I +P+E V  ++ G++   +R+ +PGY
Sbjct: 124 WYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPGY 183

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQR------- 116
           +L++  +TD+ +  +++TP V GF+G T + PS +T  E+  I+                
Sbjct: 184 ILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTPG 243

Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                + V F +GE V V DGPFA+    +  V+ +  ++ V V IFGR TPVEL+++QV
Sbjct: 244 SAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQV 303

Query: 174 EKI 176
            KI
Sbjct: 304 AKI 306


>gi|256831815|ref|YP_003160542.1| NusG antitermination factor [Jonesia denitrificans DSM 20603]
 gi|256685346|gb|ACV08239.1| NusG antitermination factor [Jonesia denitrificans DSM 20603]
          Length = 273

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 9/182 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y+  E +   ++G R+    ++  + +I +P E V  ++  +K    R   PG
Sbjct: 92  QWYVIHSYAGYENRVKSNLGTRIQSLNMEDYIFQIEVPMEEVAEIKNAQKKIVRRVRIPG 151

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
           YVL++  +TD+ + T++ TP V GF+G    P P+T  E+  ++       + P      
Sbjct: 152 YVLVRMDLTDESWGTVRHTPGVTGFVGNTHQPVPLTRDEVFSMLAPTLQQGESPKKKSKA 211

Query: 120 -----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                +V F VGE V V+DGPF +    +  ++ E  ++ V V IFGR TPVEL +NQV 
Sbjct: 212 KPAAVTVDFTVGESVTVTDGPFETLPATISEINIEAQKLKVLVSIFGRETPVELGFNQVA 271

Query: 175 KI 176
           KI
Sbjct: 272 KI 273


>gi|314924045|gb|EFS87876.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL001PA1]
 gi|314965017|gb|EFT09116.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL082PA2]
 gi|315093850|gb|EFT65826.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL060PA1]
 gi|315104068|gb|EFT76044.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL050PA2]
 gi|327326459|gb|EGE68248.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL103PA1]
          Length = 303

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVLARVSRENADKAP 237

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    R+   V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 298 NQIEKI 303


>gi|313812129|gb|EFS49843.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL025PA1]
          Length = 303

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKTS 237

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    R+   V I GR TPV+L +
Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 298 NQIEKI 303


>gi|319760678|ref|YP_004124616.1| Transcription antitermination protein nusG [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039392|gb|ADV33942.1| Transcription antitermination protein nusG [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 180

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E + V S+   +    +  +  +I +P+E VV +R G++  SER+FFP
Sbjct: 6   KRWYVVQAFSGFENRVVHSLNEYIKLKNMGSMFGDIMVPTEEVVEMRAGQRRKSERKFFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  PKV+GF+G   + P+P+ D EI++I+ +++    +P    
Sbjct: 66  GYVLVQMVMNDASWHLVRSIPKVMGFVGGTCDKPAPIGDKEIDNIIYRLQQIGDKPRPKT 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L ++QVEK
Sbjct: 126 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVDLDFSQVEK 179


>gi|241765523|ref|ZP_04763485.1| NusG antitermination factor [Acidovorax delafieldii 2AN]
 gi|241364680|gb|EER59705.1| NusG antitermination factor [Acidovorax delafieldii 2AN]
          Length = 197

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++RSG+      I +P+E VV ++ G++  +ERR FPG
Sbjct: 24  RWYIVHAYSGMEKAVERNILERIARSGMQTKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E++ I++Q++    +P   V 
Sbjct: 84  YVFVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQEGTDKPRHKVE 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 144 FMVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196


>gi|313835994|gb|EFS73708.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL037PA2]
 gi|314929670|gb|EFS93501.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL044PA1]
 gi|314970507|gb|EFT14605.1| transcription termination/antitermination factor NusG
           [Propionibacterium acnes HL037PA3]
 gi|328906260|gb|EGG26035.1| transcription antitermination protein NusG [Propionibacterium sp.
           P08]
          Length = 300

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    ++  + E  +P+E VV +R G +    R + PGY
Sbjct: 115 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 174

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111
           VL++  +TD  +  ++ TP V GF+G    P P+T  E+  ++             ++  
Sbjct: 175 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVIAKASRENADKAP 234

Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   +P   V  +EVGE V ++DGPFA     +  ++    RV   V I GR TPV+L +
Sbjct: 235 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRVKALVEILGRSTPVDLEF 294

Query: 171 NQVEKI 176
           NQ+EKI
Sbjct: 295 NQIEKI 300


>gi|260222522|emb|CBA32169.1| Transcription antitermination protein nusG [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 188

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 79/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  EK    +I  R+ R+G+      I +P E VV V+ G+K  +ER+FFPG
Sbjct: 15  RWYVVHAYSGMEKAVERNILERIQRAGMQSKFGRILVPMEEVVEVKNGQKKTTERKFFPG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++ VM D  +H +K T KV GF+G     P+P++++E+  I+NQ++    +P   + 
Sbjct: 75  YVLVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEAEVMKIVNQMQEGTDKPRHKIE 134

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK
Sbjct: 135 FVVGEFVRVKEGPFTDFNGSVEDVNYEKSKVRVSVTIFGRSTPVELEFSQIEK 187


>gi|206890987|ref|YP_002249161.1| transcription termination/antitermination factor NusG
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742925|gb|ACI21982.1| transcription termination/antitermination factor NusG
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 174

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V   S  E+K   SI  R+   GL+  ++ I IP+E+++ V+  +K   E++F
Sbjct: 1   MAKQWYVVHTMSGFEEKVKASIEERVKTKGLEDKISRILIPTEKIIEVKGKKKKEQEKKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY+L++  + D  +H I  T +V GF+G G+ P+P+   E+E I+ Q+    + P   
Sbjct: 61  YPGYILVEMELNDDTWHLISTTQRVTGFVG-GKKPAPIPQEEVEMILQQL-EKGRAPQIK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             FE GE V ++DGPF +F G +  VD E  RV V V IFGR TPVELA++QVEK+
Sbjct: 119 AHFEKGETVRITDGPFTNFTGYIDEVDSEHERVKVMVSIFGRQTPVELAFSQVEKV 174


>gi|194364522|ref|YP_002027132.1| transcription antitermination protein NusG [Stenotrophomonas
           maltophilia R551-3]
 gi|194347326|gb|ACF50449.1| NusG antitermination factor [Stenotrophomonas maltophilia R551-3]
          Length = 186

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 122/185 (65%), Gaps = 10/185 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+ R G++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+TP+V+GF+G   + P P+ DSE E I+N+V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQE 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V+DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQ 181

Query: 173 VEKIV 177
           VEK V
Sbjct: 182 VEKAV 186


>gi|84494813|ref|ZP_00993932.1| transcription antitermination protein NusG [Janibacter sp.
           HTCC2649]
 gi|84384306|gb|EAQ00186.1| transcription antitermination protein NusG [Janibacter sp.
           HTCC2649]
          Length = 316

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + EI +P E V  ++ G++    R   PGY
Sbjct: 128 WYVIHSYAGYENRVKTNLETRIQSLNMEDFIFEIEVPMEEVTEIKGGQRKLVRRVRMPGY 187

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------------- 109
           V+++  +TD+ +  ++ TP V GF+G    P P++  E+  ++                 
Sbjct: 188 VIVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSLDEVYTMIKPAELELAAAAAAGGGS 247

Query: 110 --VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
               A        V FEVGE V V DGPF +    +  ++ E  ++ V V IFGR TPVE
Sbjct: 248 TGSGAGSASQAPLVEFEVGESVTVMDGPFETLPATISEINAEGQKLKVLVSIFGRETPVE 307

Query: 168 LAYNQVEKI 176
           L+++QV K+
Sbjct: 308 LSFSQVSKL 316


>gi|73748761|ref|YP_308000.1| transcription antitermination protein NusG [Dehalococcoides sp.
           CBDB1]
 gi|147669527|ref|YP_001214345.1| transcription antitermination protein nusG [Dehalococcoides sp.
           BAV1]
 gi|289432786|ref|YP_003462659.1| NusG antitermination factor [Dehalococcoides sp. GT]
 gi|73660477|emb|CAI83084.1| transcription antitermination protein NusG [Dehalococcoides sp.
           CBDB1]
 gi|146270475|gb|ABQ17467.1| transcription antitermination protein nusG [Dehalococcoides sp.
           BAV1]
 gi|288946506|gb|ADC74203.1| NusG antitermination factor [Dehalococcoides sp. GT]
          Length = 177

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V  YS  E++  + +  R+     +  +  + +P+E  V V+ G++    ++  P
Sbjct: 6   KNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  M DK +  +++TP V GF+G+   P+ +   E+  I++Q+E   + P   V 
Sbjct: 66  GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQME--AESPRVKVG 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F  G+ V V DGPF  F G+V  ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177


>gi|320352905|ref|YP_004194244.1| transcription antitermination protein nusG [Desulfobulbus
           propionicus DSM 2032]
 gi|320121407|gb|ADW16953.1| transcription antitermination protein nusG [Desulfobulbus
           propionicus DSM 2032]
          Length = 187

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 11/186 (5%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYIV  ++  E K   ++  R+  +G + L  EI +P+E+VV + KG +  SER+F
Sbjct: 1   MAKSWYIVHTHTGFENKVKSTLEERIKLAGQEDLFGEILVPTEQVVEMVKGARKTSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-----------ENPSPVTDSEIEHIMNQ 109
           FPGY+L+   M ++ +HT+++TP+V GF+G             +    +TD E + I+ +
Sbjct: 61  FPGYILVNMEMNERSWHTVQETPRVTGFVGINMSQAGADKDIYKKIPSLTDKEADKILGR 120

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +     +P   V F  G+ V V DGPFA+F G+++ V  +K RV V V IFGR TPVEL 
Sbjct: 121 IADGANKPKPKVVFAEGDAVRVIDGPFANFQGVIEEVFPDKGRVRVMVSIFGRSTPVELE 180

Query: 170 YNQVEK 175
           Y QV K
Sbjct: 181 YIQVSK 186


>gi|240169413|ref|ZP_04748072.1| transcription antitermination protein NusG [Mycobacterium kansasii
           ATCC 12478]
          Length = 238

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 49  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS ++  ++   +                 
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGAAKKAAKGAASTA 168

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++RPV  V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 169 AVAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228

Query: 167 ELAYNQVEKI 176
           EL ++QV KI
Sbjct: 229 ELTFSQVSKI 238


>gi|16799355|ref|NP_469623.1| transcription antitermination protein NusG [Listeria innocua
           Clip11262]
 gi|16412707|emb|CAC95511.1| transcription antitermination factor [Listeria innocua Clip11262]
 gi|313620919|gb|EFR92094.1| transcription termination/antitermination factor NusG [Listeria
           innocua FSL S4-378]
 gi|313625359|gb|EFR95151.1| transcription termination/antitermination factor NusG [Listeria
           innocua FSL J1-023]
          Length = 177

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E + I+  +    +R 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+GE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EK+
Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177


>gi|315301178|ref|ZP_07872442.1| transcription termination/antitermination factor NusG [Listeria
           ivanovii FSL F6-596]
 gi|313630448|gb|EFR98317.1| transcription termination/antitermination factor NusG [Listeria
           ivanovii FSL F6-596]
          Length = 177

 Score =  167 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E + I+  +    +R 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+GE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EKI
Sbjct: 120 -AEANFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177


>gi|121609218|ref|YP_997025.1| NusG antitermination factor [Verminephrobacter eiseniae EF01-2]
 gi|121553858|gb|ABM58007.1| transcription antitermination protein nusG [Verminephrobacter
           eiseniae EF01-2]
          Length = 212

 Score =  167 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  Y   EK    +I  R+ R+G+      I +P+E+VV ++ G++  +ERR FPG
Sbjct: 39  RWYIVHAYLGMEKAVERNIQERIHRAGMQDKFGRILVPTEQVVEMKNGQRKTTERRLFPG 98

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           Y+L++ VM D  +H +K T KV GF+G     P  ++D+E++ I++ +     +P   + 
Sbjct: 99  YMLVEMVMDDDTWHLVKHTNKVKGFVGGSKNRPPSISDAEVQSIVSHMIEGADKPRHKME 158

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             VGE+V V +GPF  FNG+V+ V+ EKSRV V V+IFGR TPVEL + QVEK
Sbjct: 159 LMVGEQVRVKEGPFTDFNGMVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 211


>gi|27904552|ref|NP_777678.1| transcription antitermination protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31340244|sp|Q89B15|NUSG_BUCBP RecName: Full=Transcription antitermination protein nusG
 gi|27903949|gb|AAO26783.1| transcription antitermination protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 181

 Score =  167 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++Q +S  E +  +SI   +    ++ L  E+ +PSE V+ ++ G++  SE +FFP
Sbjct: 7   KRWYVLQAFSGFEGRIAQSIREHVKLKKMEKLFGEVMVPSEEVIEIKAGQRKKSEYKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+ +M +  +H ++  P+V+GF+G   + P P+TD E+  I+N+++    +P    
Sbjct: 67  GYVLIQMIMNESSWHLVRSIPRVLGFIGGTPDRPLPITDQEVNTIINKLKQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPF+ FNGIV+ VD EK+R+ V V IFGR TPVEL ++QV+K
Sbjct: 127 LFEPGETVRVNDGPFSDFNGIVEEVDYEKNRLKVSVSIFGRSTPVELDFSQVKK 180


>gi|262201104|ref|YP_003272312.1| transcription termination/antitermination factor NusG [Gordonia
           bronchialis DSM 43247]
 gi|262084451|gb|ACY20419.1| transcription termination/antitermination factor NusG [Gordonia
           bronchialis DSM 43247]
          Length = 299

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G+     R+  PGY
Sbjct: 109 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 168

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           +L++  + D  +  +++TP V GF+G    PSP++ +E+   +                 
Sbjct: 169 ILVRMDLNDDSWGAVRNTPGVTGFVGMNSKPSPLSLNEVLQFLMPRTEAKKPAAAKGAGA 228

Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
              +  AA       V FEVGE V V DGPFA+    +  V+ E+ +V V V IFGR TP
Sbjct: 229 EGVEAAAAAATATIEVDFEVGESVTVMDGPFATLPASISEVNAEQRKVKVLVSIFGRETP 288

Query: 166 VELAYNQVEKI 176
           VELA+NQVEKI
Sbjct: 289 VELAFNQVEKI 299


>gi|125975201|ref|YP_001039111.1| transcription antitermination protein nusG [Clostridium
           thermocellum ATCC 27405]
 gi|256003137|ref|ZP_05428129.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281419560|ref|ZP_06250571.1| NusG antitermination factor [Clostridium thermocellum JW20]
 gi|125715426|gb|ABN53918.1| transcription antitermination protein nusG [Clostridium
           thermocellum ATCC 27405]
 gi|255992828|gb|EEU02918.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281406782|gb|EFB37049.1| NusG antitermination factor [Clostridium thermocellum JW20]
 gi|316939365|gb|ADU73399.1| NusG antitermination factor [Clostridium thermocellum DSM 1313]
          Length = 177

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   ++   +    L   + +I +P E  + ++ G+K  S ++ F
Sbjct: 9   EAKWYVVHTYSGYENKVKANLEKIVENRNLQDYILDIVVPMEEQIEIKDGKKKASLKKVF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K +M D+ ++ +++T  V GF+G G    P+TD EI  +       V+     +
Sbjct: 69  PGYVLVKMIMNDESWYVVRNTRGVTGFVGPGSKAVPLTDEEIRAM------GVEEFAPVL 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +EVG+ V V  GP  +F GIV+ ++ EK +V V V +FGR TPVEL  +Q++KI
Sbjct: 123 DYEVGDNVRVVSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELHQIQKI 177


>gi|190572932|ref|YP_001970777.1| transcription antitermination protein NusG [Stenotrophomonas
           maltophilia K279a]
 gi|254525223|ref|ZP_05137278.1| transcription termination/antitermination factor NusG
           [Stenotrophomonas sp. SKA14]
 gi|190010854|emb|CAQ44463.1| putative transcription antitermination protein [Stenotrophomonas
           maltophilia K279a]
 gi|219722814|gb|EED41339.1| transcription termination/antitermination factor NusG
           [Stenotrophomonas sp. SKA14]
          Length = 186

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 122/185 (65%), Gaps = 10/185 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+ R G++    ++ +P+E VV +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVVEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+TP+V+GF+G   + P P+ DSE E I+N+V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQE 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V+DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQ 181

Query: 173 VEKIV 177
           VEK V
Sbjct: 182 VEKAV 186


>gi|331699210|ref|YP_004335449.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190]
 gi|326953899|gb|AEA27596.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190]
          Length = 327

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    ++  + ++ +P+E V  ++ G++   +R+  PGY
Sbjct: 143 WYVVHSYAGYENKVKSNLETRVQTLDVEDFIYQVEVPTEEVTEIKNGQRKQVQRKVLPGY 202

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +       ++  +     
Sbjct: 203 ILVRMELNDQSWGAVRNTPGVTGFVGATSRPSPLSIDDVLKFLLPKTEPAKKDAAKPGAA 262

Query: 121 ---------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                    V FEVGE V V DGPFA+    +  V+ +  ++ V V IFGR TPVEL + 
Sbjct: 263 ATPGKAAVEVDFEVGESVTVMDGPFATLPATINEVNVDAQKLKVLVSIFGRETPVELGFG 322

Query: 172 QVEKI 176
           QV KI
Sbjct: 323 QVSKI 327


>gi|315446044|ref|YP_004078923.1| transcription antitermination protein nusG [Mycobacterium sp.
           Spyr1]
 gi|315264347|gb|ADU01089.1| transcription antitermination protein nusG [Mycobacterium sp.
           Spyr1]
          Length = 272

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 83  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +                 
Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                 A +RPV  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262

Query: 167 ELAYNQVEKI 176
           EL +NQV KI
Sbjct: 263 ELTFNQVAKI 272


>gi|168823324|ref|ZP_02835324.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205340452|gb|EDZ27216.1| transcription termination/antitermination factor NusG [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 177

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P    
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL 
Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174


>gi|56961918|ref|YP_173640.1| transcription antitermination protein NusG [Bacillus clausii
           KSM-K16]
 gi|56908152|dbj|BAD62679.1| transcriptional antitermination factor [Bacillus clausii KSM-K16]
          Length = 178

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W++V  YS  E K   ++  R+    +   +  + +P E    ++ G+     R+ 
Sbjct: 1   MEKNWFVVHTYSGYENKVKANLEKRVESMEMTDHIFRVLVPVEEETEIKNGKTKQVSRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+G+   G  P+P+   E+E I+ Q+   V   
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLMPDEVERILKQMG--VVEA 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V FE+ E V V  GPFA F G ++ +  EK ++ V V +FGR TPVEL + QVEKI
Sbjct: 119 QEEVDFELKESVKVKSGPFADFVGTIEEIQVEKRKLKVHVNMFGRETPVELEFGQVEKI 177


>gi|294789162|ref|ZP_06754401.1| transcription termination/antitermination factor NusG [Simonsiella
           muelleri ATCC 29453]
 gi|294482903|gb|EFG30591.1| transcription termination/antitermination factor NusG [Simonsiella
           muelleri ATCC 29453]
          Length = 182

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 122/182 (67%), Gaps = 5/182 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY++Q YS  EK   +++  R++R  +D    +I +P E VV ++ GR++ SER+F
Sbjct: 1   MAKRWYVLQAYSGFEKNVQKTLKERIAREEMDEYFGQILVPVEEVVDIKNGRRMVSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQ---- 115
           FPGYVLI+  MTD  +H +K TP+V GF+G     P P+T  E++ +M QV  + +    
Sbjct: 61  FPGYVLIEMEMTDSSWHLVKSTPRVNGFIGGTAHRPLPITQREVDAMMAQVGGSFEVGMK 120

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +P   V FEVG++V V++GPFA F G+V++VD EK+++ V V IFGR TPVEL + QVEK
Sbjct: 121 KPKPRVEFEVGQQVRVNEGPFADFTGLVEHVDYEKNKLRVTVQIFGRETPVELEFGQVEK 180

Query: 176 IV 177
           +V
Sbjct: 181 VV 182


>gi|260887710|ref|ZP_05898973.1| transcription termination/antitermination factor NusG [Selenomonas
           sputigena ATCC 35185]
 gi|330838618|ref|YP_004413198.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185]
 gi|260862590|gb|EEX77090.1| transcription termination/antitermination factor NusG [Selenomonas
           sputigena ATCC 35185]
 gi|329746382|gb|AEB99738.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185]
          Length = 178

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 108/175 (61%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  R+   G++  +  + +P E    ++ G+K   +++ F
Sbjct: 4   EKKWYVIHTYSGYENKVKANLESRVHTMGMEDNIFNVIVPMEEEAEIKDGKKKLVKKKVF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY L++ ++ D+ ++ +++TP V GF+G+G  P P++++E++HI+  + A  ++PV  +
Sbjct: 64  PGYALVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSEAEVKHILKSMGAEEEKPVVHI 123

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             EVG+ V ++ G F +F   V  V  EK +V V V +FGR TP E++YN+VEKI
Sbjct: 124 DLEVGQAVRINSGTFENFAATVAEVLPEKGKVKVLVEMFGRETPAEVSYNEVEKI 178


>gi|103486929|ref|YP_616490.1| NusG antitermination factor [Sphingopyxis alaskensis RB2256]
 gi|98977006|gb|ABF53157.1| transcription antitermination protein nusG [Sphingopyxis alaskensis
           RB2256]
          Length = 178

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 118/178 (66%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  +S+     R GL   V  + +P E V  V++G+KV +ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVRDSVLAEAERMGLTDFVEAVEVPVETVTEVKRGKKVQAERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL K  MTD VYH +K+TPKV GFLG+   P  ++++E   I+N  E A  RP + 
Sbjct: 60  FPGYVLAKLTMTDDVYHLVKNTPKVTGFLGSSGKPQAISEAEAARILNSKEEAAARPKTE 119

Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   +E+G++V V +GPFASFNG+V+ +D +K+RV V V IFGR TPVEL + QVE++
Sbjct: 120 IRVDYEIGDQVKVLEGPFASFNGVVEELDFDKARVKVSVSIFGRATPVELDFEQVERM 177


>gi|238020173|ref|ZP_04600599.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147]
 gi|237868567|gb|EEP69571.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147]
          Length = 179

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 3/179 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK   +++  R++R G+++   +I +P E VV ++ GRK  SER+F
Sbjct: 1   MSKQWYVVQAYSGFEKNVQKALKERIAREGVENYFGQILVPVEEVVDIKNGRKTVSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAA--VQRP 117
           FPGYVL++  MTD  +H +K TP+V GF+G     P P++  E+  IM Q       ++P
Sbjct: 61  FPGYVLVEMEMTDASWHLVKSTPRVNGFIGGTANRPLPISQREVNSIMEQFGGMQGEKKP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                FEVG++V ++DGPFA F G V  VD E+S++ V V +FGR TPVEL + QVEKI
Sbjct: 121 KPKTEFEVGQQVRINDGPFADFTGDVNTVDYERSKLRVSVQVFGRETPVELDFGQVEKI 179


>gi|116871629|ref|YP_848410.1| transcription antitermination protein NusG [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116740507|emb|CAK19627.1| transcription antitermination factor NusG [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 177

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E E I+  +    +R 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEAERILKSMGMVEKR- 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+GE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EK+
Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177


>gi|270308263|ref|YP_003330321.1| transcription antiterminator [Dehalococcoides sp. VS]
 gi|270154155|gb|ACZ61993.1| transcription antiterminator [Dehalococcoides sp. VS]
          Length = 177

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V  YS  E++  + +  R+     +  +  + +P+E  V V+ G++    ++  P
Sbjct: 6   KNWYVVHTYSGHEERVRKGLDERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  M DK +  +++TP V GF+G+   P+ +   E+  I++Q+E   + P   V 
Sbjct: 66  GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQME--AESPRVKVG 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F  G+ V V DGPF  F G+V  ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177


>gi|319787937|ref|YP_004147412.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1]
 gi|317466449|gb|ADV28181.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1]
          Length = 185

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+   G++    ++ +P+E VV +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIVMHGMEDRFGDVLVPTEEVVEMRSGQKRRSERKFFP 61

Query: 63  GYVLIKAVMTDKV---------YHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++   TD           +H +K+T KV+GF+G   + P P+ D E   I+++V+ 
Sbjct: 62  GYVLVQIETTDDNGIPRIDSESWHLVKETSKVMGFIGGTADRPLPIRDEEAAAILDRVQE 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVIDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|304405633|ref|ZP_07387292.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9]
 gi|304345672|gb|EFM11507.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9]
          Length = 177

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E K   ++  R+   G++  +  + +P E  V  + G+K    R+ 
Sbjct: 1   MEKRWYVVHTYSGYENKVKANLERRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +PGYVL++ V TD  ++ +++TP V GF    G+G  P+P+   E++ I+  +   ++ P
Sbjct: 61  YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHMG--IEEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + FE+ E V V  GPFA F G ++ +  +K+++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFELKETVNVKVGPFAGFVGTIEEILLDKAKLKVHVNMFGRETPLELDYTQVEKI 177


>gi|54027090|ref|YP_121332.1| transcription antitermination protein NusG [Nocardia farcinica IFM
           10152]
 gi|54018598|dbj|BAD59968.1| putative transcription antitermination regulator [Nocardia
           farcinica IFM 10152]
          Length = 273

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    L+  + ++ +P+E V  ++ G++ N  R+  PGY
Sbjct: 84  WYVIHSYAGYENKVKANLETRVQNLDLEDYIFQVEVPTEEVTEIKNGQRKNVNRKVLPGY 143

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +       +         
Sbjct: 144 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSIDDVVKFLVPASQQKKAPAAAAAAS 203

Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                    +P   V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 204 TETSTDVAPKPAIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 263

Query: 167 ELAYNQVEKI 176
           ELA+ QV KI
Sbjct: 264 ELAFTQVAKI 273


>gi|99080068|ref|YP_612222.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
 gi|259415894|ref|ZP_05739814.1| transcription termination/antitermination factor NusG [Silicibacter
           sp. TrichCH4B]
 gi|99036348|gb|ABF62960.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
 gi|259347333|gb|EEW59110.1| transcription termination/antitermination factor NusG [Silicibacter
           sp. TrichCH4B]
          Length = 177

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 117/177 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +   GL+  + E+ +P+E V+ +R+G+KV++ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTAVVEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +VE  V+ P + 
Sbjct: 61  MPGYVLVHMEMSDQGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FEVGE+V V+DGPF  F+G+V+ VD+E  ++ V V IFGR TPVEL + QV K V
Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTKQV 177


>gi|124514455|gb|EAY55968.1| transcription antitermination protein (NusG) [Leptospirillum
           rubarum]
          Length = 184

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 101/174 (58%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++  Y+  E +   SI  R+    L  +V ++ +P + V  +++G+K  S R+ FP
Sbjct: 11  KNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++   T++    I  TPKV GFLG G  P P++  E+  + +++E+    P  S  
Sbjct: 71  GYVLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELFDRIESGTAMPSPSQH 130

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F   E V ++DGPF  F+G++  VD +  ++ V V IFGR TPVEL + QVE++
Sbjct: 131 FSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184


>gi|325675347|ref|ZP_08155031.1| transcription antitermination protein NusG [Rhodococcus equi ATCC
           33707]
 gi|325553318|gb|EGD22996.1| transcription antitermination protein NusG [Rhodococcus equi ATCC
           33707]
          Length = 265

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 77  WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +   +   +         
Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196

Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                   +PV  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPVE
Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256

Query: 168 LAYNQVEKI 176
           L++NQV+KI
Sbjct: 257 LSFNQVQKI 265


>gi|221632693|ref|YP_002521914.1| transcription termination/antitermination factor NusG
           [Thermomicrobium roseum DSM 5159]
 gi|221156617|gb|ACM05744.1| transcription termination/antitermination factor NusG
           [Thermomicrobium roseum DSM 5159]
          Length = 198

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 2/171 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++  R+    +   V E+ IP +  + +R G++   +R+ FPGY
Sbjct: 28  WYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPGY 87

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL++ ++ D+ +H +++TP V GF+G G  P P+  +E E I+    A  ++P   +   
Sbjct: 88  VLVRMILDDESWHVVRNTPGVTGFVGVGNRPVPLDRAEAEAIIR--GAKAEQPKVRMTLL 145

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ V + DGPF  F G+V  VD EK +V V V  FGR TPV L + QVE+
Sbjct: 146 PGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196


>gi|169830421|ref|YP_001716403.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637265|gb|ACA58771.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 178

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +W++V  YS  E K   ++  R+    ++  +  I +P E  + V+ G++  S+R+ 
Sbjct: 1   MSKQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYV+++ ++ D  Y  +++TP V GF+G+   G  P P+TD+E   I++Q+E     P
Sbjct: 61  FPGYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEG--DEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +    GE+V V  GPF +F G V +V+ EK+++ V + +FGR TP+EL Y Q+EK+
Sbjct: 119 RIRIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177


>gi|118616514|ref|YP_904846.1| transcription antitermination protein NusG [Mycobacterium ulcerans
           Agy99]
 gi|118568624|gb|ABL03375.1| transcription antitermination protein, NusG [Mycobacterium ulcerans
           Agy99]
          Length = 237

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 49  WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +T  ++   +                 
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168

Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                 ++RPV  V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPVE
Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228

Query: 168 LAYNQVEKI 176
           L +NQV KI
Sbjct: 229 LTFNQVSKI 237


>gi|323490600|ref|ZP_08095805.1| transcription antitermination protein NusG [Planococcus donghaensis
           MPA1U2]
 gi|323395692|gb|EGA88533.1| transcription antitermination protein NusG [Planococcus donghaensis
           MPA1U2]
          Length = 177

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G++ L+  + IP E+    + G+K    R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVETMGMEDLIFRVIIPEEQETDFKDGKKRTVMRKT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD+ ++ +++TP V GF+   G G  P+P+ D E+E I+ Q+    ++ 
Sbjct: 61  FPGYVLVELIMTDESWYVVRNTPGVTGFIGSSGGGAKPTPLLDEEVEFILKQMGMTERKV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + F V + V V +GPFA+F G V+ +D+ K +V V + IFGR T +EL + QV+K+
Sbjct: 121 --DIDFAVADTVEVMEGPFANFQGKVEEIDDTKGKVKVSIDIFGRETKMELDFEQVQKV 177


>gi|74316411|ref|YP_314151.1| transcription antitermination protein nusG [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055906|gb|AAZ96346.1| NusG antitermination factor [Thiobacillus denitrificans ATCC 25259]
          Length = 187

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 13/186 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV------------TEITIPSERVVSVRK 50
            RWY+V  YS  EK    ++  R+ R+G+                  I +P E VV +R 
Sbjct: 1   MRWYVVHAYSGFEKSVARALEERIERAGMRDRFGVIVDEKTGKPRPAIMVPVEEVVEMRA 60

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQ 109
           G+K  +ER+FFPGYVL++  M D  +H +K TPKV GF+G     P+P+++ E++ I++Q
Sbjct: 61  GQKKTAERKFFPGYVLVQMEMDDDTWHLVKSTPKVTGFVGGTATKPAPISEKEVQAILDQ 120

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +   V++P   V FEVGE+V V DGPF  FNG V+ V+ +KS++ V V+IFGR TPVEL 
Sbjct: 121 MREGVEKPKPKVLFEVGEQVRVIDGPFTDFNGNVEEVNYDKSKLRVSVMIFGRATPVELG 180

Query: 170 YNQVEK 175
           + QVEK
Sbjct: 181 FGQVEK 186


>gi|296282315|ref|ZP_06860313.1| NusG antitermination factor [Citromicrobium bathyomarinum JL354]
          Length = 178

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 113/178 (63%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  ++I     R GL   V E+ +P+E V  +++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVRDAIISEAERLGLSEGVEEVEVPTETVTELKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
            PGYVL K  MTD +YH +K+TPKV GFLG G  P  +++ E       VE A   P   
Sbjct: 60  MPGYVLAKLNMTDDIYHLVKNTPKVTGFLGAGNKPQAISEKEAARYFGGVEEAKAAPKQQ 119

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            S+ +E+G++V V DGPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE +
Sbjct: 120 VSIDYEIGDQVKVLDGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVELV 177


>gi|253577165|ref|ZP_04854485.1| transcription termination/antitermination factor NusG
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843409|gb|EES71437.1| transcription termination/antitermination factor NusG
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 177

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E K   ++  R+   G++  +  + +P E  V  + G+K    R+ 
Sbjct: 1   MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +PGYVL++ + TD  ++ +++TP V GF    G+G  P+P+   E++ I+  +   ++ P
Sbjct: 61  YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILAHMG--MEEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + FE+ E V +  GPFA+F G ++ +  +KS+V V V +FGR TP+EL Y+QVEKI
Sbjct: 119 KPVIEFELKENVRIKVGPFANFVGSIEEILTDKSKVKVHVNMFGRETPLELDYSQVEKI 177


>gi|21241725|ref|NP_641307.1| transcription antitermination protein NusG [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21107094|gb|AAM35843.1| transcription antitermination factor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 185

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRSGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|294668063|ref|ZP_06733182.1| transcription antitermination protein NusG [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292601870|gb|EFF45698.1| transcription antitermination protein NusG [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 185

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|322381140|ref|ZP_08055143.1| transcription antitermination-like protein NusG [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154716|gb|EFX46987.1| transcription antitermination-like protein NusG [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 180

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 103/179 (57%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E K   ++  R+    +   +  + +P E  +  + G+K    R+ 
Sbjct: 4   MEKRWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPMEEELVNKDGKKKTVMRKV 63

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +PGYVL++ + TD  ++ +++TP V GF    G+G  P+P+   E++ I+  +   ++ P
Sbjct: 64  YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHMG--IEEP 121

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + F + E V V  GPFA+F G V+ +  EKS++ V V +FGR TP+EL ++QVEK+
Sbjct: 122 KPKIDFNLKETVRVKVGPFANFVGTVEEIIPEKSKLKVHVNMFGRETPLELDFDQVEKL 180


>gi|294675843|ref|YP_003576458.1| transcription antitermination protein NusG [Rhodobacter capsulatus
           SB 1003]
 gi|294474663|gb|ADE84051.1| transcription antitermination protein NusG [Rhodobacter capsulatus
           SB 1003]
          Length = 179

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +   GL   + E+ +P+E V+ +R+G+KV SERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKVAEQIKQAVIDKGLGDEIEEVLVPTEEVIEIRRGKKVTSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPV 118
            PGYVL++  MTD+ YH I    +V GFLG    P+P+ DSE+  I+N+     +   P 
Sbjct: 61  MPGYVLVRMDMTDRGYHAITSINRVTGFLGPQGKPTPMRDSEVNTILNRQGPTGEVVAPR 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + FE+GE V V+DGPF  F+G+V+ VD+   R+ V V IFGR TPVEL + QV K
Sbjct: 121 NLIRFEIGENVSVTDGPFEGFSGMVEEVDDAAGRLKVTVSIFGRPTPVELEFTQVSK 177


>gi|145225693|ref|YP_001136371.1| transcription antitermination protein NusG [Mycobacterium gilvum
           PYR-GCK]
 gi|145218179|gb|ABP47583.1| transcription antitermination protein nusG [Mycobacterium gilvum
           PYR-GCK]
          Length = 272

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 83  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +                 
Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                 A +RPV  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262

Query: 167 ELAYNQVEKI 176
           EL +NQV KI
Sbjct: 263 ELTFNQVAKI 272


>gi|78046542|ref|YP_362717.1| transcription antitermination protein NusG [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78034972|emb|CAJ22617.1| transcription antitermination factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 185

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEGGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|160895954|ref|YP_001561536.1| NusG antitermination factor [Delftia acidovorans SPH-1]
 gi|160361538|gb|ABX33151.1| NusG antitermination factor [Delftia acidovorans SPH-1]
          Length = 194

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++RS +      I +P+E VV ++ G++  +ERR FPG
Sbjct: 21  RWYIVHAYSGMEKAVERNIIERIARSDMQSKFGRILVPTEEVVEMKNGQRRTTERRLFPG 80

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E+  I++Q++   ++P   V 
Sbjct: 81  YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVSQMQEGTEKPRHKVE 140

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  GE V V +GPF  FNG V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 141 FMPGELVRVKEGPFTDFNGSVEEVNYEKSRLRVSVMIFGRSTPVELEFAQVEK 193


>gi|183980992|ref|YP_001849283.1| transcription antitermination protein, NusG [Mycobacterium marinum
           M]
 gi|183174318|gb|ACC39428.1| transcription antitermination protein, NusG [Mycobacterium marinum
           M]
          Length = 237

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 49  WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +T  ++   +                 
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168

Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                 ++RPV  V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPVE
Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228

Query: 168 LAYNQVEKI 176
           L +NQV KI
Sbjct: 229 LTFNQVSKI 237


>gi|312141016|ref|YP_004008352.1| transcription antitermination protein nusg [Rhodococcus equi 103S]
 gi|311890355|emb|CBH49673.1| transcription antitermination protein NusG [Rhodococcus equi 103S]
          Length = 265

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 77  WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           +L++  + D+ +  +++TP V GF+G    PSP+T +E+   +   +   +         
Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196

Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                   +PV  V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPVE
Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256

Query: 168 LAYNQVEKI 176
           L++NQV+KI
Sbjct: 257 LSFNQVQKI 265


>gi|91774623|ref|YP_544379.1| transcription antitermination protein nusG [Methylobacillus
           flagellatus KT]
 gi|91708610|gb|ABE48538.1| transcription antitermination protein nusG [Methylobacillus
           flagellatus KT]
          Length = 179

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 2/179 (1%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  RWY VQ +S  EK   +++  R++RS +  L  +I +P E VV ++ G K  +ER+
Sbjct: 1   MSGMRWYAVQAFSGFEKSVKKALEERIARSDIGDLFGDILVPVEEVVEMKNGVKSITERK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118
            +PGYVL++  M+D+ +H +K TP+V  F+G   + P+P+ D E+E I+ +++ +   P 
Sbjct: 61  LYPGYVLVQMQMSDESWHLVKSTPRVTAFIGGTAQKPTPIKDKEVEIILQRMDESKSNPT 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
             + F+ GE V V DGPF  F+G V++V+ EKS++ V VVIFGR TPVEL ++QVEK V
Sbjct: 121 QKLTFDKGESVRVIDGPFKDFSGSVEDVNYEKSKLRVSVVIFGRATPVELDFSQVEKEV 179


>gi|21230352|ref|NP_636269.1| transcription antitermination protein NusG [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769654|ref|YP_244416.1| transcription antitermination protein NusG [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188992866|ref|YP_001904876.1| transcription antitermination protein NusG [Xanthomonas campestris
           pv. campestris str. B100]
 gi|18496618|gb|AAL74155.1|AF426391_2 NusG protein [Xanthomonas campestris pv. campestris]
 gi|21111906|gb|AAM40193.1| transcription antitermination factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574986|gb|AAY50396.1| transcription antitermination factor [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734626|emb|CAP52836.1| transcription antitermination factor [Xanthomonas campestris pv.
           campestris]
          Length = 185

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/183 (42%), Positives = 120/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARTEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+TPKV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHDEAGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V+DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|218290029|ref|ZP_03494196.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1]
 gi|258512684|ref|YP_003186118.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|218239863|gb|EED07051.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1]
 gi|257479410|gb|ACV59729.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 181

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  R+   G++  +  + +P+E  V ++ G+K   +R+ +
Sbjct: 5   EKQWYVIHTYSGYENKVKSNLESRVQTMGMEDRIFRVVVPTEEAVEIKNGKKRVVQRKTY 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P P+   E+E I++ +     +PV
Sbjct: 65  PGYVLVEMIMTDDSWYVVRNTPGVTGFVGSPGAGSKPVPLMPHEVEQILSSMGVNEAKPV 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   F+VG+ V ++ GPFA   G V+ V  E  ++ V V +FGR TP+E  + QVE +
Sbjct: 125 A--QFKVGDVVRLTSGPFADMVGTVEEVHPEHQKLKVLVSMFGRETPLEADFTQVEHL 180


>gi|289663461|ref|ZP_06485042.1| transcription antitermination protein NusG [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289667608|ref|ZP_06488683.1| transcription antitermination protein NusG [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 185

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHDEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|121534746|ref|ZP_01666567.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1]
 gi|121306766|gb|EAX47687.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1]
          Length = 176

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  ++   G+++ +  + +P E  V ++ G+K  ++R+ F
Sbjct: 4   EKKWYVIHTYSGYENKVKANLEKKVRSMGMENEIFRVLVPMEDEVEIKDGKKKVAKRKVF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ ++ D+ ++ +++TP V GF+G+G  P P++D+E+ HI+  +     +P   V
Sbjct: 64  PGYVLVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSDAEVRHILKAMGIEEIKP--KV 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +G+ V ++ G F ++   V  V  ++ ++ V + +FGR TPVEL + QVEKI
Sbjct: 122 DISIGQLVRITSGAFENWTASVLEVYPDRGKLKVLINLFGRETPVELDFVQVEKI 176


>gi|260577197|ref|ZP_05845173.1| NusG antitermination factor [Rhodobacter sp. SW2]
 gi|259020577|gb|EEW23897.1| NusG antitermination factor [Rhodobacter sp. SW2]
          Length = 178

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 116/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++ +GL   + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIKTAVAEAGLQDEIEEVLVPTEEVIEVRRGKKVTSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++  MT+K YH I    +V GFLG    P  + DSE+  I+N+VE  ++ P + 
Sbjct: 61  MPGYVLVRMEMTNKGYHLISSINRVTGFLGPQGKPQAMRDSEVNAILNRVEEGLEAPRNL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+GE+V VSDGPF  F G+V++VDE  SR+ V V IFGR TP+EL + QV K
Sbjct: 121 IRFEIGEQVQVSDGPFEGFTGMVEDVDEGHSRLKVTVSIFGRATPLELEFTQVTK 175


>gi|84625056|ref|YP_452428.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575476|ref|YP_001912405.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84368996|dbj|BAE70154.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188519928|gb|ACD57873.1| transcription termination/antitermination factor NusG [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 185

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T +V+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|254462232|ref|ZP_05075648.1| transcription termination/antitermination factor NusG
           [Rhodobacterales bacterium HTCC2083]
 gi|206678821|gb|EDZ43308.1| transcription termination/antitermination factor NusG
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 177

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 113/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I      +GL+  + E+ +P+E V+ VR+G+KV SERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSTIENGLEDDIEEVLVPTEEVIEVRRGKKVTSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++  M+D+ YH I    +V GFLG    P P+ D+E+E I+ +V      P + 
Sbjct: 61  MPGYVLVRMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVEAILGRVAEGEDAPRNI 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VD+E  R+ V V IFGR TPVEL Y QV K
Sbjct: 121 IHFEVGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRETPVELEYTQVNK 175


>gi|239993447|ref|ZP_04713971.1| transcription termination/antitermination factor NusG [Alteromonas
           macleodii ATCC 27126]
          Length = 183

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ YS  E +  +++   +    ++    ++ +P+E VV +R G+K  SER+F+P
Sbjct: 9   KRWYVVQAYSQYESRVKKTLLEYIKMHNMEDYFGQVLVPTEEVVEMRAGQKRKSERKFYP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  MT++ +H +K  P+V+GF+G   + P P+T  E + I+N++E  V +P    
Sbjct: 69  GYVLVEMAMTEESWHLVKSVPRVLGFIGGTSDRPMPITQKEADAILNRLEENVDKPRPKT 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L + QVEK
Sbjct: 129 LFEPGEVIRVIDGPFADFNGVVEEVDYEKSRVKVSVLIFGRSTPVDLEFGQVEK 182


>gi|57234268|ref|YP_181717.1| transcription antitermination protein NusG [Dehalococcoides
           ethenogenes 195]
 gi|57224716|gb|AAW39773.1| transcription antitermination protein NusG [Dehalococcoides
           ethenogenes 195]
          Length = 177

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 2/174 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V  YS  E++  + +  R+     +  +  + +P+E  V V+ G +    ++  P
Sbjct: 6   KNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGLRRTIRKKILP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  M DK +  +++TP V GF+G+   P+ +   E+  I++Q+E   + P   V 
Sbjct: 66  GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQME--AESPRVKVG 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F  G+ V V DGPF  F G+V  ++ EK +V V + +FGR TPVEL + QVEK+
Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177


>gi|312144260|ref|YP_003995706.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus']
 gi|311904911|gb|ADQ15352.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus']
          Length = 176

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/171 (38%), Positives = 109/171 (63%), Gaps = 2/171 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  EKK   ++  R++ +G++  +  I +P+E  +  +KG+    ++R FPG
Sbjct: 6   KWYVVHTYSGHEKKVKANLEKRIASTGMEDNIFRILVPTEEKIEKKKGKDEVVKKRIFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L++  + DK ++ +K+TP VIGF+  G  P PV   EI++I+  +    ++   SV F
Sbjct: 66  YILLQMDLNDKSWYVVKNTPGVIGFVSGGNKPLPVEKDEIDNILRSMGEKAKKV--SVEF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           EVG+++ V+ GPF  F GIVK +  E+ +V V V +FGR TPVEL ++Q++
Sbjct: 124 EVGDQIVVTSGPFEDFEGIVKEIHPEQGKVKVLVSMFGRETPVELEFSQIK 174


>gi|33520005|ref|NP_878837.1| transcription antitermination protein NusG [Candidatus Blochmannia
           floridanus]
 gi|33504351|emb|CAD83244.1| transcription antitermination protein NusG [Candidatus Blochmannia
           floridanus]
          Length = 181

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   ++   +    +  +  +I +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFENQVARALKEHIKIKDMSSMFGDIMVPTEEVVEMRSGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ VM    +H +K+ PKV+GF+G   + P+P+ D E++ I+ +++    +P    
Sbjct: 67  GYVLVQMVMNSSSWHLVKNVPKVLGFVGGTCDKPAPIGDKEVDAIICKLKQIGDKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L + QVEK
Sbjct: 127 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRSTPVDLDFAQVEK 180


>gi|312869692|ref|ZP_07729839.1| transcription termination/antitermination factor NusG
           [Lactobacillus oris PB013-T2-3]
 gi|311094741|gb|EFQ53038.1| transcription termination/antitermination factor NusG
           [Lactobacillus oris PB013-T2-3]
          Length = 181

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E +   ++  R    G+   +  + +  E V  V+ G+        F
Sbjct: 5   EKRWYVLHTYSGYENRVKSNLESRAQSMGMQDYIFRVVVAEETVREVKDGQAKEVTENTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++  ++TP V GFL   G G  P+P+   E+E IM ++       V
Sbjct: 65  PGYVLVEMIMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPDEVERIMKRMG--ADITV 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S +  + G+ V V  GPFA   G V  VD EK ++ V V +FGR T  EL ++QV+ +
Sbjct: 123 SDIDVKEGDTVKVIAGPFADLTGKVTEVDHEKQKLKVNVEMFGRETSAELGFDQVDTV 180


>gi|332188803|ref|ZP_08390513.1| transcription termination/antitermination factor NusG [Sphingomonas
           sp. S17]
 gi|332011156|gb|EGI53251.1| transcription termination/antitermination factor NusG [Sphingomonas
           sp. S17]
          Length = 178

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/177 (49%), Positives = 116/177 (65%), Gaps = 3/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  +SI    +R GLDHLV +I +P+E V   R+G+K+  ER+F
Sbjct: 1   MA-RWYIIHAYSGFEGKVRDSIMAEATRLGLDHLVAQIEVPTETVTEARRGKKIAVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL K  M D+VYH +K+TPKV GFLG    P  +++SE   ++N  E A   P   
Sbjct: 60  MPGYVLAKLDMNDQVYHLVKNTPKVTGFLGAMGKPQAISESEATRMLNSKEEAAAAPKHK 119

Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V   +E+G+ V V +GPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE+
Sbjct: 120 VKVDYEIGDAVKVLEGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVER 176


>gi|296168428|ref|ZP_06850308.1| transcription antitermination protein NusG [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896722|gb|EFG76357.1| transcription antitermination protein NusG [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 250

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 61  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 120

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +T  ++   +                 
Sbjct: 121 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 180

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++RP   V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 181 AAAEAGGLERPAVEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 240

Query: 167 ELAYNQVEKI 176
           EL ++QV KI
Sbjct: 241 ELTFSQVSKI 250


>gi|261409534|ref|YP_003245775.1| NusG antitermination factor [Paenibacillus sp. Y412MC10]
 gi|315649717|ref|ZP_07902801.1| NusG antitermination factor [Paenibacillus vortex V453]
 gi|329925607|ref|ZP_08280448.1| transcription termination/antitermination factor NusG
           [Paenibacillus sp. HGF5]
 gi|261285997|gb|ACX67968.1| NusG antitermination factor [Paenibacillus sp. Y412MC10]
 gi|315274905|gb|EFU38281.1| NusG antitermination factor [Paenibacillus vortex V453]
 gi|328939736|gb|EGG36078.1| transcription termination/antitermination factor NusG
           [Paenibacillus sp. HGF5]
          Length = 177

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E K   ++  R+   G++  +  + +P E  +  + G+K    R+ 
Sbjct: 1   MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEIVNKDGKKKTVMRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +PGYVL++ + TD  ++ +++TP V GF    G+G  P+P+   E+E I+  +   ++ P
Sbjct: 61  YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHMG--MEEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + F++ E V +  GPFA+F G V+ +  EKS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDIKESVRIKVGPFANFVGSVEEILAEKSKLKVHVNMFGRETPLELDYTQVEKI 177


>gi|56551620|ref|YP_162459.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761255|ref|ZP_04759343.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|56543194|gb|AAV89348.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374162|gb|EER63659.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 179

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 120/178 (67%), Gaps = 4/178 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYI+  YS  E K  E++     R GL  LV  I +P+E+ V VR+G+KV  ER+ 
Sbjct: 1   MS-RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKC 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---QRP 117
           FPGYVL K  M + VYH +K+TPKV GFLG    P P++D+E EHI+N+   A    ++ 
Sbjct: 60  FPGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNRKAEAEVAGKKA 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+
Sbjct: 120 QIKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177


>gi|73663528|ref|YP_302309.1| transcription antitermination factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72496043|dbj|BAE19364.1| transcription antitermination factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 182

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTLTKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E   I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQMG--MKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  ++GE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 125 IDVQIDLGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182


>gi|296268525|ref|YP_003651157.1| NusG antitermination factor [Thermobispora bispora DSM 43833]
 gi|296091312|gb|ADG87264.1| NusG antitermination factor [Thermobispora bispora DSM 43833]
          Length = 246

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E +  ++I  R+    ++  + ++ +P+  V  ++ G+K   + R  PGY
Sbjct: 67  WYVVHSYAGYENRVKQNIESRIISLNMEDYIYQVEVPTHTVTEIKGGKKTPVKERVLPGY 126

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQR 116
           VL++ V+TD+ +  +++TP V GF+G    PSP+   ++  ++           +A+ + 
Sbjct: 127 VLVRMVLTDESWAAVRNTPGVTGFVGLSNKPSPLGLDDVARLLAPEPEEEEAAAKASAKS 186

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +V FEVGE V V DGPFA+    V  V  E  ++ V V IFGR TPVEL+++QV K+
Sbjct: 187 AAPAVEFEVGESVTVMDGPFATLPATVSEVSPESQKLKVLVSIFGRETPVELSFDQVAKL 246


>gi|89053051|ref|YP_508502.1| transcription antitermination protein nusG [Jannaschia sp. CCS1]
 gi|88862600|gb|ABD53477.1| transcription antitermination protein nusG [Jannaschia sp. CCS1]
          Length = 177

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 112/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EK+  E I   ++  GL+ ++ E+ +P E V+ +R+G+KV   RRF
Sbjct: 1   MAKRWYSVSVLSNFEKRIAEQIRTAVAEKGLEDVIEEVLVPEEDVIEIRRGKKVTVPRRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++  MTD  YH I    +V GFLG    P P+ D E+  I+N+VE     P S+
Sbjct: 61  MPGYVLVRMEMTDVGYHVISSIQRVTGFLGPQGRPMPMRDEEVNSILNRVEEGEASPRST 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F+VGE+V V+DGPF  F+G+V+ VDE+  R+ V V IFGR TPVEL Y QV K
Sbjct: 121 ITFDVGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEYTQVSK 175


>gi|166710815|ref|ZP_02242022.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 185

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|254294452|ref|YP_003060475.1| NusG antitermination factor [Hirschia baltica ATCC 49814]
 gi|254042983|gb|ACT59778.1| NusG antitermination factor [Hirschia baltica ATCC 49814]
          Length = 180

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 96/180 (53%), Positives = 124/180 (68%), Gaps = 4/180 (2%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M   RWYIV  YSN EKK   SI  + +   L+HL  EI +P+E VVSV +G+K  +ERR
Sbjct: 1   MAKARWYIVHAYSNFEKKVAASIREQAAMQELEHLFEEIEVPTEEVVSVVRGKKKTTERR 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +FPGYVL+K  +TD  YH +K+TPKV GFLG   G+ P PV  SE++ IM Q   A +RP
Sbjct: 61  YFPGYVLVKMQLTDAAYHLVKETPKVTGFLGADGGKKPLPVPQSEVDRIMGQASEAAERP 120

Query: 118 V-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +V +EVGE+V V+DGPFASF G V++VD E +R+ V V IFGR TPV+L + QVEK+
Sbjct: 121 EIPNVIYEVGEKVKVTDGPFASFEGAVEDVDLEAARLKVTVSIFGRETPVDLEFGQVEKL 180


>gi|297172924|gb|ADI23885.1| transcription antiterminator [uncultured gamma proteobacterium
           HF4000_48J03]
          Length = 177

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 112/176 (63%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++QVYSN EKK +  +  R    GL     +I +P+E +V ++ G+K  SER+F
Sbjct: 1   MEYQWYVLQVYSNYEKKVLTMLQDRSKVLGLSEQFADIVVPTEEIVEMKGGQKKTSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVL+   + D+ +H +   P V+GF+G   E P+P++D E+  I+N+ E A   P  
Sbjct: 61  FPGYVLVNMNLNDETWHFVNSIPNVMGFVGGTSEKPAPISDREVMIILNKAEDAANAPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              ++ GE V V +GPF  FNG+V+ V+ EK+++ V V I GR TPVEL +NQVEK
Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKNKLFVAVQILGRATPVELNFNQVEK 176


>gi|32491266|ref|NP_871520.1| hypothetical protein WGLp517 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166473|dbj|BAC24663.1| nusG [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 181

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E K  +S+        ++H   E+ IP+E ++ +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFESKVAQSLKEHTKLYKMEHFFGEVMIPTEEILEIRHGKRKKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI  VM D  ++ +K+ PKV+GF+G   + P+P++D EIE+I+ +++    +P    
Sbjct: 67  GYVLIHMVMNDSSWYLVKNIPKVMGFVGGTSDKPAPISDKEIEYIVKRLQKIGNKPRPKT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V DGPF+ FNG+V+ VD EK+R+ V V+IFGR TPVEL ++Q+EK
Sbjct: 127 LFEPGELVRVKDGPFSDFNGVVEEVDYEKNRLKVSVLIFGRATPVELDFSQLEK 180


>gi|15923525|ref|NP_371059.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926213|ref|NP_373746.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus N315]
 gi|21282220|ref|NP_645308.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49482766|ref|YP_039990.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485401|ref|YP_042622.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651412|ref|YP_185468.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|82750244|ref|YP_415985.1| transcription antitermination protein [Staphylococcus aureus RF122]
 gi|87160422|ref|YP_493224.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194298|ref|YP_499090.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266996|ref|YP_001245939.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393043|ref|YP_001315718.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220710|ref|YP_001331532.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156978864|ref|YP_001441123.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508776|ref|YP_001574435.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141027|ref|ZP_03565520.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315646|ref|ZP_04838859.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731141|ref|ZP_04865306.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253732544|ref|ZP_04866709.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255005330|ref|ZP_05143931.2| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424650|ref|ZP_05601077.1| transcription antitermination protein nusG [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427318|ref|ZP_05603717.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429954|ref|ZP_05606338.1| transcription antitermination protein nusG [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432656|ref|ZP_05609016.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435560|ref|ZP_05611608.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus M876]
 gi|257795365|ref|ZP_05644344.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9781]
 gi|258408948|ref|ZP_05681229.1| transcription termination-antitermination factor NusG
           [Staphylococcus aureus A9763]
 gi|258420414|ref|ZP_05683357.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9719]
 gi|258422617|ref|ZP_05685523.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9635]
 gi|258439335|ref|ZP_05690267.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9299]
 gi|258444075|ref|ZP_05692412.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8115]
 gi|258446343|ref|ZP_05694501.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A6300]
 gi|258448436|ref|ZP_05696551.1| transcription antitermination protein nusG [Staphylococcus aureus
           A6224]
 gi|258452731|ref|ZP_05700729.1| transcription antitermination protein nusG [Staphylococcus aureus
           A5948]
 gi|258453792|ref|ZP_05701766.1| transcription antitermination protein nusG [Staphylococcus aureus
           A5937]
 gi|262049578|ref|ZP_06022447.1| transcription antitermination protein [Staphylococcus aureus D30]
 gi|262052423|ref|ZP_06024623.1| transcription antitermination protein [Staphylococcus aureus
           930918-3]
 gi|269202159|ref|YP_003281428.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894971|ref|ZP_06303194.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8117]
 gi|282903124|ref|ZP_06311015.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus C160]
 gi|282904914|ref|ZP_06312772.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907864|ref|ZP_06315699.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910177|ref|ZP_06317981.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913369|ref|ZP_06321158.1| transcription antitermination protein NusG [Staphylococcus aureus
           subsp. aureus M899]
 gi|282915859|ref|ZP_06323624.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus D139]
 gi|282918324|ref|ZP_06326061.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923286|ref|ZP_06330966.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus C101]
 gi|282924450|ref|ZP_06332122.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9765]
 gi|282928873|ref|ZP_06336464.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A10102]
 gi|283769692|ref|ZP_06342584.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus H19]
 gi|283957334|ref|ZP_06374787.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023546|ref|ZP_06377944.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500415|ref|ZP_06666266.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509360|ref|ZP_06668071.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus M809]
 gi|293523947|ref|ZP_06670634.1| transcription antitermination protein NusG [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294850312|ref|ZP_06791046.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9754]
 gi|295406913|ref|ZP_06816716.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8819]
 gi|295427074|ref|ZP_06819710.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275782|ref|ZP_06858289.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208750|ref|ZP_06925178.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246263|ref|ZP_06930112.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8796]
 gi|297590573|ref|ZP_06949212.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus MN8]
 gi|300912840|ref|ZP_07130282.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381865|ref|ZP_07364512.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|60390427|sp|Q6GBV1|NUSG_STAAS RecName: Full=Transcription antitermination protein nusG
 gi|60390441|sp|Q6GJD2|NUSG_STAAR RecName: Full=Transcription antitermination protein nusG
 gi|60392842|sp|P0A095|NUSG_STAAM RecName: Full=Transcription antitermination protein nusG
 gi|60392843|sp|P0A096|NUSG_STAAN RecName: Full=Transcription antitermination protein nusG
 gi|60392844|sp|P0A097|NUSG_STAAW RecName: Full=Transcription antitermination protein nusG
 gi|81695157|sp|Q5HID9|NUSG_STAAC RecName: Full=Transcription antitermination protein nusG
 gi|110815889|sp|Q2G0P2|NUSG_STAA8 RecName: Full=Transcription antitermination protein nusG
 gi|110815890|sp|P0C1S3|NUSG_STAAE RecName: Full=Transcription antitermination protein nusG
 gi|13183703|gb|AAK15310.1|AF327733_7 NusG [Staphylococcus aureus subsp. aureus str. Newman]
 gi|2078377|gb|AAB54018.1| NusG [Staphylococcus aureus]
 gi|13700426|dbj|BAB41724.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus N315]
 gi|14246303|dbj|BAB56697.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203656|dbj|BAB94356.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49240895|emb|CAG39562.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49243844|emb|CAG42269.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285598|gb|AAW37692.1| transcription antitermination protein NusG [Staphylococcus aureus
           subsp. aureus COL]
 gi|82655775|emb|CAI80175.1| transcription antitermination protein [Staphylococcus aureus RF122]
 gi|87126396|gb|ABD20910.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87201856|gb|ABD29666.1| transcription antitermination protein, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740065|gb|ABQ48363.1| transcription antitermination protein nusG [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945495|gb|ABR51431.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150373510|dbj|BAF66770.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156720999|dbj|BAF77416.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367585|gb|ABX28556.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725106|gb|EES93835.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253729473|gb|EES98202.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257272220|gb|EEV04343.1| transcription antitermination protein nusG [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275511|gb|EEV06984.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279151|gb|EEV09752.1| transcription antitermination protein nusG [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282071|gb|EEV12206.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284751|gb|EEV14870.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus M876]
 gi|257789337|gb|EEV27677.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9781]
 gi|257840299|gb|EEV64762.1| transcription termination-antitermination factor NusG
           [Staphylococcus aureus A9763]
 gi|257843604|gb|EEV68010.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9719]
 gi|257847189|gb|EEV71197.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9635]
 gi|257847672|gb|EEV71671.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9299]
 gi|257850745|gb|EEV74690.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8115]
 gi|257854937|gb|EEV77882.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A6300]
 gi|257858305|gb|EEV81192.1| transcription antitermination protein nusG [Staphylococcus aureus
           A6224]
 gi|257859604|gb|EEV82454.1| transcription antitermination protein nusG [Staphylococcus aureus
           A5948]
 gi|257864048|gb|EEV86802.1| transcription antitermination protein nusG [Staphylococcus aureus
           A5937]
 gi|259159669|gb|EEW44713.1| transcription antitermination protein [Staphylococcus aureus
           930918-3]
 gi|259162318|gb|EEW46891.1| transcription antitermination protein [Staphylococcus aureus D30]
 gi|262074449|gb|ACY10422.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940109|emb|CBI48485.1| transcription antitermination protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282314154|gb|EFB44544.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317458|gb|EFB47830.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus C427]
 gi|282320155|gb|EFB50500.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus D139]
 gi|282322401|gb|EFB52723.1| transcription antitermination protein NusG [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325569|gb|EFB55877.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328248|gb|EFB58526.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331739|gb|EFB61250.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589481|gb|EFB94570.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A10102]
 gi|282592861|gb|EFB97865.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9765]
 gi|282596079|gb|EFC01040.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus C160]
 gi|282762653|gb|EFC02790.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8117]
 gi|283459839|gb|EFC06929.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus H19]
 gi|283469828|emb|CAQ49039.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790785|gb|EFC29600.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816236|gb|ADC36723.1| Transcription antitermination protein NusG [Staphylococcus aureus
           04-02981]
 gi|290920910|gb|EFD97971.1| transcription antitermination protein NusG [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095420|gb|EFE25681.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467457|gb|EFF09972.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus M809]
 gi|294822824|gb|EFG39259.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A9754]
 gi|294968144|gb|EFG44170.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8819]
 gi|295128862|gb|EFG58492.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886695|gb|EFH25600.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176861|gb|EFH36119.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus A8796]
 gi|297576872|gb|EFH95587.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus MN8]
 gi|298693867|gb|ADI97089.1| transcription antitermination protein NusG [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300885944|gb|EFK81147.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332249|gb|ADL22442.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302750427|gb|ADL64604.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339651|gb|EFM05598.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312439044|gb|ADQ78115.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829032|emb|CBX33874.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128829|gb|EFT84828.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193900|gb|EFU24294.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315196652|gb|EFU26999.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141599|gb|EFW33438.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141772|gb|EFW33600.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439806|gb|EGA97523.1| transcription antitermination protein [Staphylococcus aureus O11]
 gi|323443092|gb|EGB00712.1| transcription antitermination protein [Staphylococcus aureus O46]
 gi|329313256|gb|AEB87669.1| Transcription antitermination protein nusG [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727905|gb|EGG64354.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329731015|gb|EGG67388.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329731956|gb|EGG68312.1| transcription termination/antitermination factor NusG
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 182

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 105/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+   + ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTTVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  EVGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|85710261|ref|ZP_01041326.1| transcription antiterminator [Erythrobacter sp. NAP1]
 gi|85688971|gb|EAQ28975.1| transcription antiterminator [Erythrobacter sp. NAP1]
          Length = 178

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYI+  YS  E K  E+I     R GL   V EI +P+E V  V++G+KV  ER+F
Sbjct: 1   MS-RWYIIHAYSGFENKVKEAIIAEADRLGLSEGVEEIEVPTETVTEVKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--V 118
            PGYVL K  M D +YH +K+TPKV GFLG    P P+++ E       VE A   P   
Sbjct: 60  MPGYVLAKLRMNDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKTQ 119

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            SV +E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE +
Sbjct: 120 VSVDYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELDFEQVELV 177


>gi|58583220|ref|YP_202236.1| transcription antitermination protein NusG [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427814|gb|AAW76851.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 203

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R++R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 20  KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 79

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T +V+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 80  GYVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQD 139

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 140 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 199

Query: 173 VEK 175
           VEK
Sbjct: 200 VEK 202


>gi|325916475|ref|ZP_08178744.1| transcription antitermination protein nusG [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537264|gb|EGD08991.1| transcription antitermination protein nusG [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 185

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/183 (41%), Positives = 118/183 (64%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+ R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIVRTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V+DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|457386|gb|AAA27500.1| transcription factor [Thermus thermophilus]
          Length = 244

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V      E+KA  ++  R+   GL   + ++ IP+E VV +R+G +K    ++
Sbjct: 61  MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 120

Query: 60  FFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112
            FPGY+ I+  + D+      +  ++ TP + GF+G G  P P++  E+ HI+    +  
Sbjct: 121 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 180

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             + P + V F  G++V V  GPFA F G V  ++ E+ +V V V IFGR TPVEL ++Q
Sbjct: 181 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 240

Query: 173 VEK 175
           V K
Sbjct: 241 VVK 243


>gi|262277083|ref|ZP_06054876.1| transcription termination/antitermination factor NusG [alpha
           proteobacterium HIMB114]
 gi|262224186|gb|EEY74645.1| transcription termination/antitermination factor NusG [alpha
           proteobacterium HIMB114]
          Length = 174

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 120/174 (68%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIVQ +++ EKK  E I   L ++ L     EI +P++ V  ++KG++   ++++FP
Sbjct: 1   MKWYIVQAHASAEKKLSEQIKEELEKADLGSKFGEILVPTQDVTEIKKGKRSVVKKKYFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+L+K  MT+ VYH IK   KV GFLG    PSP+++ E+  I+  +E +V  P SS+ 
Sbjct: 61  GYILVKLDMTNDVYHLIKSLKKVSGFLGPQGKPSPISEEEVNKIVGNMEESVANPSSSIT 120

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F+VGE+V V DGPFASFNG ++ +DE+KSR+ V V IFGR TPV+L Y+QVEK+
Sbjct: 121 FQVGEQVKVCDGPFASFNGSIEEIDEDKSRLKVSVSIFGRPTPVDLDYSQVEKV 174


>gi|255262997|ref|ZP_05342339.1| transcription termination/antitermination factor NusG
           [Thalassiobium sp. R2A62]
 gi|255105332|gb|EET48006.1| transcription termination/antitermination factor NusG
           [Thalassiobium sp. R2A62]
          Length = 177

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 113/175 (64%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +  + L   + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVEEAELQDQIDEVLVPTEEVIEIRRGKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH +    +V GFLG    P P+ D+E+  I+N+V+   + P + 
Sbjct: 61  MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEESPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FEVGE+V V+DGPF  F+G+V+ VDEE  R+ V V IFGR TPVEL + QV K
Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMVEEVDEENLRLKVTVSIFGRATPVELEFTQVVK 175


>gi|285017308|ref|YP_003375019.1| transcription antitermination protein nusg [Xanthomonas albilineans
           GPE PC73]
 gi|283472526|emb|CBA15031.1| probable transcription antitermination protein nusg [Xanthomonas
           albilineans]
          Length = 185

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+ R  +     ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIVRDEMQERFGDVLVPTEEVIEMRSGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+TPKV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHDEGGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDQEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V+DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|256825902|ref|YP_003149862.1| transcription antitermination protein nusG [Kytococcus sedentarius
           DSM 20547]
 gi|256689295|gb|ACV07097.1| transcription antitermination protein nusG [Kytococcus sedentarius
           DSM 20547]
          Length = 296

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E V  ++  +K   ER   PGY
Sbjct: 106 WYVLHTYAGYEKRVKANLEQRAVSMNMEDYIFQAEVPMETVTEIKNNQKKTVERVRMPGY 165

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
            L++  +T+  + T+++TP V GF+G   +P P++  E+  ++     +  +        
Sbjct: 166 CLVRMDLTNASWGTVRNTPGVTGFVGNATDPVPLSLGEVFDMLAPDFESQAQAAAGSQEG 225

Query: 117 -----------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                       +  V FEVGE V V +GPF +    +  ++ E  +V V V IFGR TP
Sbjct: 226 ATTVEPKSGTPQMPLVDFEVGEAVTVMEGPFETLPATISEINVEARKVQVLVSIFGRETP 285

Query: 166 VELAYNQVEKI 176
           VELA+NQV KI
Sbjct: 286 VELAFNQVAKI 296


>gi|86137179|ref|ZP_01055757.1| transcription termination/antitermination factor NusG [Roseobacter
           sp. MED193]
 gi|85826503|gb|EAQ46700.1| transcription termination/antitermination factor NusG [Roseobacter
           sp. MED193]
          Length = 177

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 115/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   ++   L+  + E+ +P+E V+ +R+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIRTSVAEQRLEDEIDEVLVPTEEVIEIRRGKKVPTERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL+   M+D+ YH I    +V GFLG    P P+ D+E++ I+ +VE  V+ P + 
Sbjct: 61  MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE+G++V V+DGPF  F+G+V+ VD+E  ++ V V IFGR TPVEL Y QV K
Sbjct: 121 ISFEIGDKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDYTQVTK 175


>gi|15828020|ref|NP_302283.1| transcription antitermination protein NusG [Mycobacterium leprae
           TN]
 gi|221230497|ref|YP_002503913.1| transcription antitermination protein NusG [Mycobacterium leprae
           Br4923]
 gi|18202753|sp|Q9CBK0|NUSG_MYCLE RecName: Full=Transcription antitermination protein nusG
 gi|13093573|emb|CAC30860.1| transcription antitermination protein nusG [Mycobacterium leprae]
 gi|219933604|emb|CAR72002.1| transcription antitermination protein nusG [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 39  WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +   ++   +                 
Sbjct: 99  ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPSGSAKKDAKGAVSTA 158

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  ++R +  V +EVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TPV
Sbjct: 159 AAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 218

Query: 167 ELAYNQVEKI 176
           EL ++QV KI
Sbjct: 219 ELTFSQVSKI 228


>gi|220930952|ref|YP_002507860.1| NusG antitermination factor [Halothermothrix orenii H 168]
 gi|219992262|gb|ACL68865.1| NusG antitermination factor [Halothermothrix orenii H 168]
          Length = 176

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 2/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   ++  R+  + ++  +  I +P+E  +  +KG++   E+R F
Sbjct: 4   EKKWYVVHTYSGHENKVKANLEKRIKATDMEDKIFRILVPTEEKIESKKGKQKKVEKRIF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ +MTD  ++ +++TP V GF+ +G  P P+   E +HI+  +   ++     +
Sbjct: 64  PGYVLVEMIMTDDSWYVVRNTPGVTGFVSSGTKPLPLQPEEAKHILRGMG--IEDDKIEL 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F VG++V + DGPF  F G +K V  ++S+V V V +FGR TP+EL ++Q+EKI
Sbjct: 122 DFGVGDKVKIVDGPFEEFIGEIKEVHPQQSKVKVLVSMFGRETPLELEFSQIEKI 176


>gi|45644660|gb|AAS73048.1| predicted transcription antiterminator NusG [uncultured marine
           gamma proteobacterium EBAC20E09]
          Length = 175

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++Q YS  E+K   ++  R+  + L     EI IP+E++V ++ G K  +ER+FFP
Sbjct: 1   MDWYVIQAYSGYEQKVKAALEERIMLNNLSEKFGEILIPTEQIVELKAGTKKTTERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GY+LI+  + D  +  ++ TP+V GF+G   + P P+++ +++ I+N++E     P    
Sbjct: 61  GYILIQMNLEDDSWQLVQSTPRVSGFVGGTRDKPLPISEDDVKSIINRIEVGEDAPAPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE + V DGPF  FNG+V+ VD E++   V V I GR TPVEL + Q+EK
Sbjct: 121 IYEPGEVIRVCDGPFNDFNGVVEEVDYERNIAKVSVQILGRATPVELDFIQIEK 174


>gi|294627829|ref|ZP_06706408.1| transcription antitermination protein NusG [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292597743|gb|EFF41901.1| transcription antitermination protein NusG [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 185

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 118/183 (64%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+ R+ ++    ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIVRAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVL++           + ++ +H +K+T KV+GF+G   + P P+ D E + I+ +V+ 
Sbjct: 62  GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V++P   V FE G+ V V++GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 173 VEK 175
           VEK
Sbjct: 182 VEK 184


>gi|114771284|ref|ZP_01448704.1| Probable transcription antitermination protein NusG [alpha
           proteobacterium HTCC2255]
 gi|114548209|gb|EAU51096.1| Probable transcription antitermination protein NusG [alpha
           proteobacterium HTCC2255]
          Length = 177

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 117/175 (66%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   + + G+   + ++ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKVAELINEAVEQEGMQDEIEQVLVPTEEVIEVRRGKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGY+L++  M++K YH I +  +V GFLG    PSP+ D E+  I+NQVE  V+ P + 
Sbjct: 61  MPGYLLVRMDMSEKGYHLINNINRVTGFLGQPGKPSPMRDKEVAFILNQVEEGVENPRNL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F++GE+V V++GPF  F G+V+ VD+E SR+ V V IFGR TPVEL + QV K
Sbjct: 121 ITFDIGEQVNVTEGPFEGFAGMVEEVDQENSRLKVTVSIFGRATPVELEFTQVMK 175


>gi|78358031|ref|YP_389480.1| transcription antitermination protein nusG [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220436|gb|ABB39785.1| transcription antitermination protein nusG [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 184

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/172 (40%), Positives = 110/172 (63%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E++  ++I   +       L+ E+ +P+E+V+ + KG K  S R+F+PG
Sbjct: 12  RWYIVHTYSGFEQRVEQTIRQMIRTGEAQDLIEEVVVPTEKVIELVKGEKRTSTRKFYPG 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+++K +MTD  +H +++  +V GF+G    P+P+ DSE E I+  +E+  ++P     F
Sbjct: 72  YIMVKMIMTDFSWHLVQNINRVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFNF 131

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 132 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVNK 183


>gi|260752788|ref|YP_003225681.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552151|gb|ACV75097.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 179

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 119/178 (66%), Gaps = 4/178 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWYI+  YS  E K  E++     R GL  LV  I +P+E+ V VR+G+KV  ER+ 
Sbjct: 1   MS-RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKC 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---QRP 117
           FPGYVL K  M + VYH +K+TPKV GFLG    P P++D+E EHI+N    A    ++ 
Sbjct: 60  FPGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNHKAEAEVAGKKA 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+
Sbjct: 120 QIKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177


>gi|320095594|ref|ZP_08027257.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977502|gb|EFW09182.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 309

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 11/187 (5%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+P  WY++  YS  E+K   ++  R++   ++  +  + +P E V+  R   K    R 
Sbjct: 121 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDSIFSVEVPDEYVMEYRGTAKKRVRRV 180

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRP 117
             PGY ++     ++ Y  +K+TP V GF+G   NP P++  E+  ++  N +E A ++ 
Sbjct: 181 RIPGYAIVCMDFNEESYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEKK 240

Query: 118 VSS--------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                        FEVGE V V DGPF + +  +  +  E  ++ V V IF R TP+EL 
Sbjct: 241 KDKPAPVQEIRTAFEVGETVTVIDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 300

Query: 170 YNQVEKI 176
           ++QVEK+
Sbjct: 301 FDQVEKL 307


>gi|224475684|ref|YP_002633290.1| transcription antitermination protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|548394|sp|P36264|NUSG_STACT RecName: Full=Transcription antitermination protein nusG
 gi|426473|emb|CAA53738.1| nusG [Staphylococcus carnosus]
 gi|222420291|emb|CAL27105.1| transcription antitermination protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 182

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLTKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMG--MKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  EVGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVEVEVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|85375046|ref|YP_459108.1| transcription antiterminator [Erythrobacter litoralis HTCC2594]
 gi|84788129|gb|ABC64311.1| transcription antiterminator [Erythrobacter litoralis HTCC2594]
          Length = 178

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/178 (46%), Positives = 113/178 (63%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  ++I     R GL   V E+ +P+E V  +++G+KV +ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVRDAIIAEADRLGLSDGVEEVEVPTETVTEIKRGKKVQTERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL K  MTD +YH +K+TPKV GFLG    P P+++ E       VE A   P   
Sbjct: 60  MPGYVLAKLQMTDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKKD 119

Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   +E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE +
Sbjct: 120 IQVDYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELEFEQVELV 177


>gi|150010981|gb|ABR57147.1| transcription antitermination protein [Staphylococcus xylosus]
          Length = 182

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEKIFRVVIPEEEETQVKDGKAKTLSKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E   I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQMG--MKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  E+GE+V +  GPFA+  G ++ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 125 IDVQVELGEQVRIKSGPFANQVGEIQEIETDKFKLTVLVDMFGRETPVEVEFDQVEKL 182


>gi|46581327|ref|YP_012135.1| transcription antitermination protein NusG [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120601494|ref|YP_965894.1| NusG antitermination factor [Desulfovibrio vulgaris DP4]
 gi|46450749|gb|AAS97395.1| transcription antitermination protein NusG [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120561723|gb|ABM27467.1| transcription antitermination protein nusG [Desulfovibrio vulgaris
           DP4]
 gi|311234987|gb|ADP87841.1| NusG antitermination factor [Desulfovibrio vulgaris RCH1]
          Length = 183

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 107/172 (62%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E +  ++I   +        + E+ +P+E+V+ + KG K  S R+F+PG
Sbjct: 11  RWYIVHTYSGFENRVEQTIREMIRTGQSQDEIVEVVVPTEKVIELVKGEKRTSTRKFYPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  MTD  +H ++  PKV GF+G    P+P+ DSE E I+  +E+  ++P     F
Sbjct: 71  YVMVKMFMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFNF 130

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 131 DRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 182


>gi|254467958|ref|ZP_05081364.1| transcription termination/antitermination factor NusG [beta
           proteobacterium KB13]
 gi|207086768|gb|EDZ64051.1| transcription termination/antitermination factor NusG [beta
           proteobacterium KB13]
          Length = 178

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           MT RWY VQ YS  EK   + +  R+  S +     ++ +P E VV ++ G+K  SERR 
Sbjct: 1   MTKRWYAVQAYSGYEKIVQKGLLERIEISNIKDQFGDVLVPVEEVVELKAGQKTISERRL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +PGYVL++  M D  +H ++ TPKV  F+G     P+P+ D E+E I+ +++ +   P  
Sbjct: 61  YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSALKPTPIKDKEVELILRRMDDSKVNPTQ 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            + FEVGE + V DGPF  F+G V+ ++ EK+++ VEVVIFGR TPVEL + Q++K V
Sbjct: 121 KLTFEVGESIRVIDGPFKDFSGSVQEINYEKNKLRVEVVIFGRATPVELDFGQIQKEV 178


>gi|304315927|ref|YP_003851072.1| NusG antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777429|gb|ADL67988.1| NusG antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 175

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V  YS  E K   ++   +    L +L+ +I +P+E+VV ++ G+K + +R+ F
Sbjct: 6   SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQIVVPTEKVVEIKDGKKKSVDRKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K VM D+ ++ +++T  V GF+G G  P P+T++E+  +       ++   +SV
Sbjct: 66  PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEAQTSV 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +VG+ V V  GP  +F G+V+ +  ++ +  V + +FGR TPVE  + Q++KI
Sbjct: 120 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 174


>gi|223042705|ref|ZP_03612753.1| transcription termination/antitermination factor NusG
           [Staphylococcus capitis SK14]
 gi|314932760|ref|ZP_07840129.1| transcription termination/antitermination factor NusG
           [Staphylococcus caprae C87]
 gi|222443559|gb|EEE49656.1| transcription termination/antitermination factor NusG
           [Staphylococcus capitis SK14]
 gi|313654441|gb|EFS18194.1| transcription termination/antitermination factor NusG
           [Staphylococcus caprae C87]
          Length = 182

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDQSWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|294496969|ref|YP_003560669.1| transcription termination/antitermination factor NusG [Bacillus
           megaterium QM B1551]
 gi|294346906|gb|ADE67235.1| transcription termination/antitermination factor NusG [Bacillus
           megaterium QM B1551]
          Length = 177

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++  ++  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKITKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD  ++ +++TP V GF+   G+G  P+ +   E+E I+ Q+   +   
Sbjct: 61  FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQMG--MDEK 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI
Sbjct: 119 HADFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177


>gi|126724847|ref|ZP_01740690.1| transcription termination/antitermination factor NusG
           [Rhodobacterales bacterium HTCC2150]
 gi|126706011|gb|EBA05101.1| transcription termination/antitermination factor NusG
           [Rhodobacterales bacterium HTCC2150]
          Length = 177

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 114/175 (65%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E I   +  +GL+  + E+ +P+E V+ VR+G+KV +ERRF
Sbjct: 1   MAKRWYSVSVLSNYEKKIAEQIRTDVITAGLEDEIEEVLVPTEEVIEVRRGKKVTAERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVLI+  M+D+ +H I    +V GFLG    P P+ D+E+  I+N+VE     P + 
Sbjct: 61  MPGYVLIRMEMSDRGFHLINSINRVTGFLGQQGRPMPMRDAEVNQILNRVEEGEAAPRNL 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +FFE+GE+V V+ GPF  F G+V+ VD+E  R+ V V IFGR TPVEL Y +V K
Sbjct: 121 IFFEIGEKVKVNGGPFEGFEGMVEEVDDENQRLKVTVSIFGRETPVELEYTEVTK 175


>gi|108797896|ref|YP_638093.1| transcription antitermination protein NusG [Mycobacterium sp. MCS]
 gi|119866991|ref|YP_936943.1| transcription antitermination protein NusG [Mycobacterium sp. KMS]
 gi|108768315|gb|ABG07037.1| transcription antitermination protein nusG [Mycobacterium sp. MCS]
 gi|119693080|gb|ABL90153.1| transcription antitermination protein nusG [Mycobacterium sp. KMS]
          Length = 270

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 80  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 139

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +                 
Sbjct: 140 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 199

Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                EA ++RP   V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TP
Sbjct: 200 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 259

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 260 VELTFNQVSKI 270


>gi|222112416|ref|YP_002554680.1| nusg antitermination factor [Acidovorax ebreus TPSY]
 gi|221731860|gb|ACM34680.1| NusG antitermination factor [Acidovorax ebreus TPSY]
          Length = 196

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++R+G+      I +P+E VV ++ G++  +ERR FPG
Sbjct: 23  RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E++ I++Q++    +P   + 
Sbjct: 83  YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195


>gi|295702336|ref|YP_003595411.1| transcription termination/antitermination factor NusG [Bacillus
           megaterium DSM 319]
 gi|294799995|gb|ADF37061.1| transcription termination/antitermination factor NusG [Bacillus
           megaterium DSM 319]
          Length = 177

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++  ++  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKVTKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD  ++ +++TP V GF+   G+G  P+ +   E+E I+ Q+   +   
Sbjct: 61  FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQMG--MDEK 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +   FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI
Sbjct: 119 HADFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177


>gi|121596189|ref|YP_988085.1| transcription antitermination protein nusG [Acidovorax sp. JS42]
 gi|120608269|gb|ABM44009.1| transcription antitermination protein nusG [Acidovorax sp. JS42]
          Length = 196

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R++R+G+      I +P+E VV ++ G++  +ERR FPG
Sbjct: 23  RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E++ I++Q++    +P   + 
Sbjct: 83  YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195


>gi|42524388|ref|NP_969768.1| transcription antitermination protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39576597|emb|CAE80761.1| transcription antitermination protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 177

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYIV V ++CE  A ++I  ++  S ++    EI IP+E VV + KG+K    R+F
Sbjct: 1   MEKKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGY+ ++  + D+ +H ++++ KV GF+G  +  P  V ++E+  +  Q+    ++P  
Sbjct: 61  FPGYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V F VGE V V DGPF++F G V+ ++E+K+++ V V IFGR TPVEL Y QVEK
Sbjct: 121 KVKFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176


>gi|323465328|gb|ADX77481.1| transcription termination/antitermination factor NusG
           [Staphylococcus pseudintermedius ED99]
          Length = 182

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+    +   
Sbjct: 67  PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMGMNEK--S 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  E+GE+V ++ GPFAS  G +  ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVEVELGEQVRITSGPFASQVGEIHEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|28212185|ref|NP_783129.1| transcription antitermination protein NusG [Clostridium tetani E88]
 gi|28204629|gb|AAO37066.1| transcription antitermination protein nusG [Clostridium tetani E88]
          Length = 173

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L   + +I +P E  V ++ G+K  + ++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKANLEKTIENRNLQDWIHDIRVPMEEQVEIKDGKKKIALKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIK VMTD  ++ +++T  V GF+G G  P P+TD E+E +       +   V  +  
Sbjct: 66  YVLIKMVMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDIEVESM------GISDEVIELDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E+GE V V+ GP  +F  +++ +  EK +  V V +FGR TPVEL +NQ++K+
Sbjct: 120 EIGESVKVTTGPLENFPAVIQEIFPEKHKAKVLVNMFGRETPVELDFNQIQKL 172


>gi|269215893|ref|ZP_06159747.1| transcription termination/antitermination factor NusG [Slackia
           exigua ATCC 700122]
 gi|269130843|gb|EEZ61919.1| transcription termination/antitermination factor NusG [Slackia
           exigua ATCC 700122]
          Length = 181

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+ +WY+V  YS  E K  +++  R+   GL+  + +I IP+E V  +++G R+V SE++
Sbjct: 1   MSKKWYVVHTYSGYENKVKQTLETRIEMYGLEDSIVDIQIPTETVTEIKEGGRRVESEKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118
             P YVL++  M D+ +  +++TP V GF+G     PSP+T +E   IM++ +A+    V
Sbjct: 61  VLPSYVLVRMEMNDRNWAVVRNTPGVTGFVGPESSTPSPLTRAEFNKIMHRNDASAGVAV 120

Query: 119 SS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                   EVG+ V V+ GP A F+GIV  V  E  +V V V IFGR TPVEL+++QV  
Sbjct: 121 PKKTSTSLEVGQTVKVTSGPLAEFDGIVSEVSPEAGKVKVLVSIFGRETPVELSFDQVAS 180

Query: 176 I 176
           I
Sbjct: 181 I 181


>gi|323143688|ref|ZP_08078359.1| transcription termination/antitermination factor NusG
           [Succinatimonas hippei YIT 12066]
 gi|322416521|gb|EFY07184.1| transcription termination/antitermination factor NusG
           [Succinatimonas hippei YIT 12066]
          Length = 219

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  E++  +++  R+    ++H   E+ +P E+V  ++ G+K  SER+FFPG
Sbjct: 45  RWYVVQAFSGFEQRVAQTLRERIKIHNMEHDFGEVLVPKEKVKEIKDGKKRESERKFFPG 104

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++  MT + +  +K T +V+GF+G   E P P+T +E + I++++  + + P     
Sbjct: 105 YVLVQMRMTSETWQLVKHTDRVLGFIGGTAEKPLPITQAEADKILSRLRESEESPRPKTI 164

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V   DG F  F G V+ VD EK+RV V + IFGR TPVEL ++QVEK
Sbjct: 165 YEVGEVVRAIDGAFKDFVGTVEKVDYEKNRVTVSIAIFGRATPVELEFSQVEK 217


>gi|308070990|ref|YP_003872595.1| Transcription antitermination protein nusG [Paenibacillus polymyxa
           E681]
 gi|310644219|ref|YP_003948978.1| nusg antitermination factor [Paenibacillus polymyxa SC2]
 gi|305860269|gb|ADM72057.1| Transcription antitermination protein nusG [Paenibacillus polymyxa
           E681]
 gi|309249170|gb|ADO58737.1| NusG antitermination factor [Paenibacillus polymyxa SC2]
          Length = 177

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  YS  E K   ++  R+   G++  +  + +P E  +  + G+K    R+ 
Sbjct: 1   MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVTKDGKKKTVMRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +PGYVL++ V TD  ++ +++TP V GF    G+G  P+P+   E+E I+  +     +P
Sbjct: 61  YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHMGMVEPKP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + F+V E V +  GPFA+F G V+ +  EKS++ V V +FGR TP+EL Y QVEKI
Sbjct: 121 --KIEFDVKESVRIKVGPFANFVGSVEEILVEKSKLKVHVNMFGRETPLELDYTQVEKI 177


>gi|319761181|ref|YP_004125118.1| transcription termination/antitermination factor nusg
           [Alicycliphilus denitrificans BC]
 gi|330823041|ref|YP_004386344.1| NusG antitermination factor [Alicycliphilus denitrificans K601]
 gi|317115742|gb|ADU98230.1| transcription termination/antitermination factor NusG
           [Alicycliphilus denitrificans BC]
 gi|329308413|gb|AEB82828.1| NusG antitermination factor [Alicycliphilus denitrificans K601]
          Length = 196

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  EK    +I  R+ RSG+ H    I +P+E VV ++ G++  +ERR FPG
Sbjct: 23  RWYIVHAYSGMEKAVERNIQERIVRSGMQHKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YV ++ VM D  +H +K T KV GF+G     P+P+++ E++ I++Q++    +P   + 
Sbjct: 83  YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VGE V V +GPF  FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFGQVEK 195


>gi|119383494|ref|YP_914550.1| NusG antitermination factor [Paracoccus denitrificans PD1222]
 gi|119373261|gb|ABL68854.1| transcription antitermination protein nusG [Paracoccus
           denitrificans PD1222]
          Length = 179

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/177 (44%), Positives = 112/177 (63%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY V V SN EKK  E+I   +   G++  + E+ +P+E V+ +R+G+KV SERRF
Sbjct: 1   MAKRWYSVSVLSNFEKKVAEAIRQAVVEKGIEDQIDEVLVPTEEVIEIRRGKKVTSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PV 118
            PGYVL++  ++DK YH +    +V GFLG    P P+ D E+  I+++         P 
Sbjct: 61  MPGYVLVRMELSDKTYHLVNSINRVTGFLGAQGKPMPMRDDEVNAILHRTGEGGAEVAPR 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + F+VGE+V V+DGPF  F+G+V+ VDE  +R+ V V IFGR TPVEL + QV K
Sbjct: 121 NLIRFDVGEKVNVTDGPFEGFSGMVEEVDEAANRIKVTVSIFGRPTPVELEFTQVAK 177


>gi|251799659|ref|YP_003014390.1| NusG antitermination factor [Paenibacillus sp. JDR-2]
 gi|247547285|gb|ACT04304.1| NusG antitermination factor [Paenibacillus sp. JDR-2]
          Length = 177

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+V  Y+  E K   ++  RL   G++  +  + +P E  V  + G+K   +R+ 
Sbjct: 1   MEKRWYVVHTYAGYENKVKANLERRLESMGMEDKIFRVLVPMEEEVVEKDGKKKTVQRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           +PGYVL++ V TD  ++ +++TP V GF    G+G  P  +   E+E I+  +   ++ P
Sbjct: 61  YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPIALMPDEVEQILKHMG--MEEP 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + F++ E V V  GPFA F G V+ +  +KS++ V V +FGR TP+EL Y QVEKI
Sbjct: 119 KPKIEFDLKETVRVKVGPFADFVGTVEEILLDKSKLKVHVNMFGRETPLELDYTQVEKI 177


>gi|242372754|ref|ZP_04818328.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
           M23864:W1]
 gi|242349527|gb|EES41128.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
           M23864:W1]
          Length = 182

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|228475251|ref|ZP_04059976.1| transcription termination/antitermination factor NusG
           [Staphylococcus hominis SK119]
 gi|314937159|ref|ZP_07844506.1| transcription termination/antitermination factor NusG
           [Staphylococcus hominis subsp. hominis C80]
 gi|228270716|gb|EEK12125.1| transcription termination/antitermination factor NusG
           [Staphylococcus hominis SK119]
 gi|313655778|gb|EFS19523.1| transcription termination/antitermination factor NusG
           [Staphylococcus hominis subsp. hominis C80]
          Length = 182

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|289551664|ref|YP_003472568.1| Transcription antitermination protein NusG [Staphylococcus
           lugdunensis HKU09-01]
 gi|315659123|ref|ZP_07911988.1| transcription termination/antitermination factor NusG
           [Staphylococcus lugdunensis M23590]
 gi|289181195|gb|ADC88440.1| Transcription antitermination protein NusG [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495847|gb|EFU84177.1| transcription termination/antitermination factor NusG
           [Staphylococcus lugdunensis M23590]
          Length = 182

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKHWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKVVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +  E+GE+V +  GPF++  G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+
Sbjct: 125 IDIELEIGEQVRIKSGPFSNQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182


>gi|148244883|ref|YP_001219577.1| transcription antitermination protein NusG [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326710|dbj|BAF61853.1| transcription antitermination protein NusG [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 177

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+    S  E K   +I     R GL+ LV E+ +P+E+VV ++ G+K  +ER+F
Sbjct: 1   MSKRWYVFHARSGFESKVKIAIEESTIREGLEDLVGEVLVPTEQVVELKDGQKKMAERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGY+L+   +T+  +  +K+T  VIGF+G     PSP+T  E++ I+ +V+    +P  
Sbjct: 61  FPGYMLVNMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKILMRVQEGADKPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V ++ GE + V DGPF  FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK
Sbjct: 121 KVAYQPGEEILVIDGPFNEFNGLVEAVDYEKNLLKVEVLIFGRSTSVELEFSQVEK 176


>gi|225024700|ref|ZP_03713892.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC
           23834]
 gi|224942526|gb|EEG23735.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC
           23834]
          Length = 180

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/180 (45%), Positives = 122/180 (67%), Gaps = 4/180 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++Q YS  EK   +++  R++R G++ L  +I +P E VV ++ GRK  SER+F
Sbjct: 1   MAKNWYVIQAYSGFEKNVQKTLKERIAREGMEGLFGQILVPVEEVVGIKNGRKTVSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV---EAAVQR 116
           FPGYVLI+  MTD+ +H +K TP+V GF+G     P P++  E++ I++QV     + ++
Sbjct: 61  FPGYVLIEMEMTDESWHLVKSTPRVNGFIGGTANRPLPISQREVDAIISQVLAVAGSEKK 120

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           P   V F VG+++ VS+GPF+ FNG+V  VD E++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 PKPRVEFMVGQQIRVSEGPFSDFNGLVDVVDYERNKLRVLVQIFGRETPVELDFSQVEKI 180


>gi|27467217|ref|NP_763854.1| transcription antitermination protein [Staphylococcus epidermidis
           ATCC 12228]
 gi|57866121|ref|YP_187773.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis RP62A]
 gi|242241868|ref|ZP_04796313.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
           W23144]
 gi|251809953|ref|ZP_04824426.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875013|ref|ZP_06283888.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis SK135]
 gi|293367912|ref|ZP_06614550.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38604831|sp|Q8CQ85|NUSG_STAES RecName: Full=Transcription antitermination protein nusG
 gi|81675390|sp|Q5HRL6|NUSG_STAEQ RecName: Full=Transcription antitermination protein nusG
 gi|27314759|gb|AAO03896.1|AE016744_299 transcription antitermination protein [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636779|gb|AAW53567.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis RP62A]
 gi|242234646|gb|EES36958.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
           W23144]
 gi|251806496|gb|EES59153.1| transcriptional antiterminator NusG [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296341|gb|EFA88860.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis SK135]
 gi|291317941|gb|EFE58349.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329729454|gb|EGG65857.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis VCU144]
 gi|329734659|gb|EGG70966.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis VCU028]
 gi|329738062|gb|EGG74283.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis VCU045]
          Length = 182

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|251772654|gb|EES53218.1| transcription antitermination protein (NusG) [Leptospirillum
           ferrodiazotrophum]
          Length = 177

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 102/174 (58%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W+++  Y+  E K   ++ G   R G++  +  + +P++ V   ++G+K  S R+ F
Sbjct: 3   EKSWFVLHTYAGFENKVKTALEGLRERGGIEDGIGIVLVPTQNVTEFKEGKKKVSTRKVF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI+   T++V+H +K  PKV GFLG    P P+T +E+  + +++E     P +S 
Sbjct: 63  PGYVLIEMEPTEEVFHYVKSVPKVTGFLGNKGKPQPMTATEVNELFHRIEEGTAMPAASE 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +  G+ + ++DGPF  F G +  VD E  +V V V IFGR TPVEL + Q+E+
Sbjct: 123 QYFEGDSIRITDGPFQGFTGAISGVDSEHGKVRVLVSIFGRQTPVELDFLQIER 176


>gi|51894226|ref|YP_076917.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857915|dbj|BAD42073.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM
           14863]
          Length = 176

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 101/175 (57%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   ++  R+    +   +  + +P E  + ++ G++   +R+ F
Sbjct: 3   EKHWYVVHTYSGYENKVKTNLEKRVESMEMQEKIFRVLVPMEDEIEIKDGKQKKVKRKVF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ VM+D  ++ +++TP V GF+G+G  P P+T  E+E I+ +     +     V
Sbjct: 63  PGYVLVEMVMSDDSWYVVRNTPGVTGFVGSGNKPIPLTPEEVEAILGRHGE-DKPAHVVV 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEV + V V  GPF    G++K +  EK +  V+V +FGR TPVE+ ++Q+E+I
Sbjct: 122 DFEVDQPVRVIAGPFKDHTGVIKEIFPEKGKARVQVTMFGRETPVEVDFSQIEEI 176


>gi|319399715|gb|EFV87964.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis FRI909]
          Length = 182

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIQSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|114567855|ref|YP_755009.1| NusG antitermination factor [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338790|gb|ABI69638.1| transcription antitermination protein nusG [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 203

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 1/172 (0%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    +  R+    +   + E+ IP E+ V  + G++  + +R FPGY
Sbjct: 33  WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V++  +M D  ++ ++ TP V GF+G+G  P P+   EI+ I  Q+    ++    +  E
Sbjct: 93  VIVNMIMDDDSWYVVRHTPGVTGFVGSGSKPIPLHQEEIDKIRRQMGLM-EKKTMIIDIE 151

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +GE + V  GPFA+F G+V+ +  EK ++ V + +FGR TPVEL Y Q+EKI
Sbjct: 152 IGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEKI 203


>gi|149186890|ref|ZP_01865199.1| transcription antiterminator [Erythrobacter sp. SD-21]
 gi|148829399|gb|EDL47841.1| transcription antiterminator [Erythrobacter sp. SD-21]
          Length = 178

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  +SI     R GL   V E+ +P+E V  V++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVRDSIIAEAERLGLSEGVEEVQVPTETVTEVKRGKKVQIERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--V 118
            PGYVL K  MTD VYH +K+TPKV GFLG    P  ++D E       VE A   P   
Sbjct: 60  MPGYVLAKLNMTDDVYHLVKNTPKVTGFLGNNNKPQAISDKEAARYFGGVEEAKSAPKKQ 119

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            SV +E+G++V V DGPFASFNG+V+ +D +K +V V V IFGR TPVEL + QVE +
Sbjct: 120 VSVDYEIGDQVKVLDGPFASFNGLVEELDFDKQKVKVSVSIFGRATPVELEFEQVELV 177


>gi|239636935|ref|ZP_04677933.1| transcription termination/antitermination factor NusG
           [Staphylococcus warneri L37603]
 gi|239597483|gb|EEQ79982.1| transcription termination/antitermination factor NusG
           [Staphylococcus warneri L37603]
 gi|330686237|gb|EGG97849.1| transcription termination/antitermination factor NusG
           [Staphylococcus epidermidis VCU121]
          Length = 182

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ EK ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEAEKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|71083815|ref|YP_266535.1| transcription antitermination protein NusG [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|91763149|ref|ZP_01265113.1| transcription antitermination protein NusG [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|71062928|gb|AAZ21931.1| transcription antitermination protein NusG [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|91717562|gb|EAS84213.1| transcription antitermination protein NusG [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 176

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/173 (46%), Positives = 119/173 (68%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYIVQ +SN E K    I     ++ +   + EI +P+  V  V++G+++  ++++FP
Sbjct: 2   KNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLIK+ M + +YH IK+  +V GFLG+   P PV+D EIE I+ Q++  V +P S + 
Sbjct: 62  GYVLIKSEMDNDLYHLIKNLKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIE 121

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + +GE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK
Sbjct: 122 YSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEK 174


>gi|126433559|ref|YP_001069250.1| transcription antitermination protein NusG [Mycobacterium sp. JLS]
 gi|126233359|gb|ABN96759.1| transcription antitermination protein nusG [Mycobacterium sp. JLS]
          Length = 271

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 81  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 140

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +                 
Sbjct: 141 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 200

Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                EA ++RP   V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TP
Sbjct: 201 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 260

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 261 VELTFNQVSKI 271


>gi|42518504|ref|NP_964434.1| transcription antitermination protein NusG [Lactobacillus johnsonii
           NCC 533]
 gi|227888784|ref|ZP_04006589.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC
           33200]
 gi|268318923|ref|YP_003292579.1| Transcription antitermination protein nusG [Lactobacillus johnsonii
           FI9785]
 gi|41582789|gb|AAS08400.1| transcription antitermination protein NusG [Lactobacillus johnsonii
           NCC 533]
 gi|227850621|gb|EEJ60707.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC
           33200]
 gi|262397298|emb|CAX66312.1| Transcription antitermination protein nusG [Lactobacillus johnsonii
           FI9785]
 gi|329666774|gb|AEB92722.1| transcription antitermination protein [Lactobacillus johnsonii DPC
           6026]
          Length = 183

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E+K  + +  R    G+ + +  + +P E+     +G+K   + + F
Sbjct: 6   EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+   G G  PSP+ D EIE I+       + P 
Sbjct: 66  PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDDEIERILASQGQPAKEP- 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               +EVGE V + DG F+  +G +  ++ EK +++V + +FGR T  EL YNQV+
Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179


>gi|319891500|ref|YP_004148375.1| Transcription antitermination protein NusG [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161196|gb|ADV04739.1| Transcription antitermination protein NusG [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 182

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+    +   
Sbjct: 67  PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMGMNEK--S 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  E+GE+V ++ GPFAS  G + +++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVEVELGEQVRITSGPFASQVGEIHDIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|257784977|ref|YP_003180194.1| NusG antitermination factor [Atopobium parvulum DSM 20469]
 gi|257473484|gb|ACV51603.1| NusG antitermination factor [Atopobium parvulum DSM 20469]
          Length = 181

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 4/180 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M  RWY+V  YS  E K    +  R+   GL+  V +I IP+E V  V+ G ++   E +
Sbjct: 1   MAKRWYVVHTYSGYENKVKTDLEHRIETYGLERAVVDIQIPTEEVTEVKDGGKRETKESK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  + D  +  +++TP V GF+G    P P+   E + IM +       PV 
Sbjct: 61  VFPGYVLVRMELDDNTWAVVRNTPGVTGFVGIDGKPVPLRRDEFDKIMRRGGMKTGSPVP 120

Query: 120 S---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                  EVG+ + V  GP A F+G V  V+ E  ++ V + IFGR TPVEL  +Q+  I
Sbjct: 121 KRTATNIEVGQAIHVLSGPLADFDGTVSEVNAESGKIKVMLTIFGRETPVELTMDQISLI 180


>gi|308235430|ref|ZP_07666167.1| transcription antiterminator [Gardnerella vaginalis ATCC 14018]
 gi|311114211|ref|YP_003985432.1| transcription termination/antitermination factor NusG [Gardnerella
           vaginalis ATCC 14019]
 gi|310945705|gb|ADP38409.1| transcription termination/antitermination factor NusG [Gardnerella
           vaginalis ATCC 14019]
          Length = 284

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 12/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R+   GL+  + +I +P E V       K    R   PG
Sbjct: 99  KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTDKGKKVITRVRVPG 158

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           YVLI+    +     +++T  V GF+G  + P+P++  E+  +M  + A+          
Sbjct: 159 YVLIRMWPDENARRIVRETEGVTGFVGPSKEPAPLSRKEVIDMMAPMIASEALKKAGDKP 218

Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               +    V ++VG++V V+DGPFA+   +V +VD    ++ V V IFGR TPVEL +N
Sbjct: 219 AAARKRTVEVAYKVGDQVTVTDGPFATMAAVVSDVDPTTQKLTVLVSIFGRETPVELGFN 278

Query: 172 QVEKIV 177
           QVE IV
Sbjct: 279 QVEPIV 284


>gi|291303407|ref|YP_003514685.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728]
 gi|290572627|gb|ADD45592.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728]
          Length = 269

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 20/192 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E +   ++ GR++   ++  + +I +P++  V V+ G++   + + FP Y
Sbjct: 78  WYVVHSYAGFENRVKSNLEGRIASFDMEDYIYQIEVPTQMQVEVKNGKRSRVQAKVFPSY 137

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T + Y  +++TP V GF+G        +   +E ++  +  AV          
Sbjct: 138 VLVRMELTPESYSVVRNTPGVTGFVGATNQTDRPSPLTLEDVLKWLAPAVAPEEPAATGS 197

Query: 115 ----------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
                      +P   + F VG+ V V+DG FAS    +  ++ ++ ++ V V IFGR T
Sbjct: 198 GESSGEGGATAKPEIKLDFAVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRET 257

Query: 165 PVELAYNQVEKI 176
           PVEL +NQV  I
Sbjct: 258 PVELNFNQVSTI 269


>gi|227552592|ref|ZP_03982641.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330]
 gi|257880337|ref|ZP_05659990.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933]
 gi|257882191|ref|ZP_05661844.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502]
 gi|257885384|ref|ZP_05665037.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501]
 gi|257888179|ref|ZP_05667832.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733]
 gi|257890996|ref|ZP_05670649.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410]
 gi|257894250|ref|ZP_05673903.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408]
 gi|257896930|ref|ZP_05676583.1| transcription antiterminator NusG [Enterococcus faecium Com12]
 gi|257899609|ref|ZP_05679262.1| transcription antiterminator NusG [Enterococcus faecium Com15]
 gi|258614712|ref|ZP_05712482.1| transcription antitermination protein NusG [Enterococcus faecium
           DO]
 gi|260562359|ref|ZP_05832873.1| transcription antitermination protein NusG [Enterococcus faecium
           C68]
 gi|261209266|ref|ZP_05923658.1| transcription antitermination protein NusG [Enterococcus faecium TC
           6]
 gi|293379127|ref|ZP_06625278.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium PC4.1]
 gi|293557114|ref|ZP_06675669.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1039]
 gi|293559848|ref|ZP_06676362.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1162]
 gi|293568368|ref|ZP_06679689.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1071]
 gi|293571552|ref|ZP_06682574.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E980]
 gi|294616181|ref|ZP_06695978.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1636]
 gi|294618923|ref|ZP_06698430.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1679]
 gi|294623149|ref|ZP_06702035.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium U0317]
 gi|314937977|ref|ZP_07845288.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133a04]
 gi|314944027|ref|ZP_07850712.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133C]
 gi|314948417|ref|ZP_07851805.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0082]
 gi|314951395|ref|ZP_07854447.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133A]
 gi|314991324|ref|ZP_07856803.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133B]
 gi|314995338|ref|ZP_07860444.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133a01]
 gi|227178218|gb|EEI59190.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330]
 gi|257814565|gb|EEV43323.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933]
 gi|257817849|gb|EEV45177.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502]
 gi|257821240|gb|EEV48370.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501]
 gi|257824233|gb|EEV51165.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733]
 gi|257827356|gb|EEV53982.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410]
 gi|257830629|gb|EEV57236.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408]
 gi|257833495|gb|EEV59916.1| transcription antiterminator NusG [Enterococcus faecium Com12]
 gi|257837521|gb|EEV62595.1| transcription antiterminator NusG [Enterococcus faecium Com15]
 gi|260073283|gb|EEW61624.1| transcription antitermination protein NusG [Enterococcus faecium
           C68]
 gi|260076812|gb|EEW64547.1| transcription antitermination protein NusG [Enterococcus faecium TC
           6]
 gi|291588889|gb|EFF20716.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1071]
 gi|291590936|gb|EFF22648.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1636]
 gi|291594839|gb|EFF26209.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1679]
 gi|291597518|gb|EFF28683.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium U0317]
 gi|291600735|gb|EFF31032.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1039]
 gi|291606184|gb|EFF35604.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E1162]
 gi|291608358|gb|EFF37658.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium E980]
 gi|292642268|gb|EFF60427.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium PC4.1]
 gi|313590431|gb|EFR69276.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133a01]
 gi|313594097|gb|EFR72942.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133B]
 gi|313596453|gb|EFR75298.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133A]
 gi|313597372|gb|EFR76217.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133C]
 gi|313642652|gb|EFS07232.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0133a04]
 gi|313645142|gb|EFS09722.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium TX0082]
          Length = 181

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   +I  R     +   +  + +P E+   V+ G++     + F
Sbjct: 5   EKNWYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P+P+   E+ HI+  +  ++++  
Sbjct: 65  PGYVLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQND 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  EVGE V + +G FA   G V  VD EK ++ V + +FGR T  EL ++QV+KI
Sbjct: 125 LEV--EVGEVVKIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 180


>gi|303247802|ref|ZP_07334071.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ]
 gi|302490886|gb|EFL50785.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ]
          Length = 187

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 106/172 (61%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E +  ++I   +        + E+ +P+E+V+ + KG K  S R+F+PG
Sbjct: 15  RWYIVHTYSGFENRVEQTIREMMRTGQDGGSIEEVVVPTEKVIELVKGEKRTSTRKFYPG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  M D  +H ++  P+V GF+G    P+P+ DSE + I++ + +  ++P     F
Sbjct: 75  YVMVKMSMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYHF 134

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 135 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186


>gi|70727472|ref|YP_254388.1| transcription antitermination protein [Staphylococcus haemolyticus
           JCSC1435]
 gi|68448198|dbj|BAE05782.1| transcription antitermination protein [Staphylococcus haemolyticus
           JCSC1435]
          Length = 182

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY V  YS  E K  +++  R+    +   +  + IP E    V+ G+     ++ F
Sbjct: 7   AKCWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQLKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   E+  I+ Q+   ++   
Sbjct: 67  PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQMG--LKEKT 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  +VGE+V +  GPFA+  G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+
Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEPDKFKLTVLVDMFGRETPVEVEFDQIEKL 182


>gi|323705648|ref|ZP_08117222.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535125|gb|EGB24902.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 176

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V  YS  E K   ++   +    L +L+ ++ +P+E+VV ++ G+K + +R+ F
Sbjct: 7   SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQVVVPTEKVVEIKDGKKKSVDRKVF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K VM D+ ++ +++T  V GF+G G  P P+T++E+  +       ++   +SV
Sbjct: 67  PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEIQTSV 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +VG+ V V  GP  +F G+V+ +  ++ +  V + +FGR TPVE  + Q++KI
Sbjct: 121 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 175


>gi|297625760|ref|YP_003687523.1| Transcription antitermination protein NusG [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921525|emb|CBL56079.1| Transcription antitermination protein NusG [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 295

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 12/185 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E +  ++I  R+    ++  + E  +P+E  V +RKG++    R F PGY
Sbjct: 110 WYVVHTYSGMENRVKQNIDNRVKSLNMEDYIYETVVPTEDAVEMRKGQRKKVTRVFMPGY 169

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112
           VL++  MTD+ + T++ TP V GF+G G+ P+P+  SE+EH++                 
Sbjct: 170 VLVRMEMTDESWSTVRHTPSVTGFVGQGQTPAPLDLSEVEHMLTPSVTAQVVASGEAKAG 229

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           A Q  V  V + VG++V V DGPFA  +  +  ++    R+  +V I GR TPV+L + Q
Sbjct: 230 ADQEKVEVVDYAVGDQVMVIDGPFAGVHATITEINTHNQRLKADVEILGRETPVDLTFPQ 289

Query: 173 VEKIV 177
           ++K++
Sbjct: 290 IQKVI 294


>gi|326203307|ref|ZP_08193172.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782]
 gi|325986565|gb|EGD47396.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782]
          Length = 179

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    +   + +I +P E  + ++ G+K  + ++ FPG
Sbjct: 13  KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 72

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P++D E++ +       V+     V +
Sbjct: 73  YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDDEVKAM------GVEEFAPEVDY 126

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EV + V V+ GP  +F GIV+ ++ EK +V V V +FGR TPVEL   Q++KI
Sbjct: 127 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 179


>gi|20808673|ref|NP_623844.1| transcription antitermination protein NusG [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517309|gb|AAM25448.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
          Length = 174

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY+V  YS  E K   ++   +    L   + +I +P+E+V  ++ G+K   ER+ F
Sbjct: 6   TAKWYVVHTYSGYENKVKANLEKIIENRNLQDKILQIVVPTEKVTEIKDGKKKVVERKIF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K +MTD+ ++ +++T  V GF+G G  P P+TD+E+  +       ++   ++V
Sbjct: 66  PGYVLVKMIMTDETWYVVRNTRGVTGFVGPGSKPVPLTDAEVRAL------GIKDVSTAV 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V + V V  GPF +F G+V+ V  E+ +  V + +FGR TPVE    Q++KI
Sbjct: 120 DLNVKDTVRVVSGPFENFIGVVQEVYPERQKAKVLISMFGRETPVEFDLVQLQKI 174


>gi|284034041|ref|YP_003383972.1| NusG antitermination factor [Kribbella flavida DSM 17836]
 gi|283813334|gb|ADB35173.1| NusG antitermination factor [Kribbella flavida DSM 17836]
          Length = 400

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E +   ++  R++   ++  + EI +P+E V  ++ G++   +R   PGY
Sbjct: 212 WYVVHTYSGMENRVKGNLENRINSLNMEDYIFEIVVPTEEVAEIKNGQRRMVKRTVLPGY 271

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +TD+ + T++ TP V GF+G  + P P++  E+E ++     A           
Sbjct: 272 VLVRMDLTDESWSTVRHTPSVTGFVGNSQKPVPLSLEEVEKMLAPAVVAAAEAAAAETGA 331

Query: 114 ------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                  ++ V    F VG+ V V DGPFA+ +  +  ++ +  R+   V IFGR TPVE
Sbjct: 332 APTKTAAKKKVEVADFGVGDSVMVVDGPFATLHATITEINADAQRIKALVEIFGRETPVE 391

Query: 168 LAYNQVEKI 176
           L+++Q++K+
Sbjct: 392 LSFSQIQKV 400


>gi|317153969|ref|YP_004122017.1| transcription termination/antitermination factor NusG
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944220|gb|ADU63271.1| transcription termination/antitermination factor NusG
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 185

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 112/172 (65%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E++  +++   +       L+ E+ +P+E+VV + KG +  S R+F+PG
Sbjct: 13  RWYIVHTYSGFEQRVEQTVREMMRTGQDKGLIEEVVMPTEKVVEMVKGERKTSTRKFYPG 72

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y++IK  +TD  +H I+  P+V GF+G    P+P+ DSE E+I+N +E+  ++P     F
Sbjct: 73  YIMIKMTLTDDTWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFNF 132

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K
Sbjct: 133 ERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 184


>gi|268316663|ref|YP_003290382.1| NusG antitermination factor [Rhodothermus marinus DSM 4252]
 gi|262334197|gb|ACY47994.1| NusG antitermination factor [Rhodothermus marinus DSM 4252]
          Length = 186

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++ +S  EKK  + +   + R GL   V +I IP+E V  +R G+K   ER FFPG
Sbjct: 12  KWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFFPG 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
           Y+LI+AV+  ++ H I + P V+GFLG+G+ P+P+   E+  I+ +V+ A +      + 
Sbjct: 72  YILIEAVLDRELQHLIANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQPEIP 131

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F+ G+ V + +GPF +F G+V+ V  +K ++ V V IFGR TP+E+ Y QVE+
Sbjct: 132 FKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184


>gi|118467542|ref|YP_885732.1| transcription antitermination protein NusG [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168829|gb|ABK69725.1| transcription antitermination protein NusG [Mycobacterium smegmatis
           str. MC2 155]
          Length = 280

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 90  WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 149

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  + D+ +  +++TP V GF+G    PSP++  ++   +                 
Sbjct: 150 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQGAAKKPGKAAAAAA 209

Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                EA ++RP   V FEVGE V V DGPFA+    +  V+ E+ ++ V V IFGR TP
Sbjct: 210 SAASTEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 269

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 270 VELTFNQVAKI 280


>gi|284042786|ref|YP_003393126.1| NusG antitermination factor [Conexibacter woesei DSM 14684]
 gi|283947007|gb|ADB49751.1| NusG antitermination factor [Conexibacter woesei DSM 14684]
          Length = 173

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 2/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++  R+        V ++ +P+E V  ++  ++V +E+R  PG
Sbjct: 3   RWYVVNTYSGHENKVKHNLEHRVVSLNQRRAVRQVVVPTESVTEMKDNQRVVTEKRTMPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+   + +  +  +K TP V GF+G    P P+T +E++ ++++     +RP S   F
Sbjct: 63  YVLVNMDLNEDSWALVKGTPGVTGFVGASNEPVPLTQAEVDRLLHR--ETAERPRSRAQF 120

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +GE V V  GP + F+G +  ++E+ +R+ V V IFGR TPVE+ ++QV+KI
Sbjct: 121 SIGESVKVVSGPLSDFSGEISEINEDGARLKVLVSIFGRETPVEVGFDQVKKI 173


>gi|255527829|ref|ZP_05394678.1| NusG antitermination factor [Clostridium carboxidivorans P7]
 gi|296187253|ref|ZP_06855649.1| transcription termination/antitermination factor NusG [Clostridium
           carboxidivorans P7]
 gi|255508470|gb|EET84861.1| NusG antitermination factor [Clostridium carboxidivorans P7]
 gi|296048124|gb|EFG87562.1| transcription termination/antitermination factor NusG [Clostridium
           carboxidivorans P7]
          Length = 173

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L   + ++ +P E  V V+ G++  + ++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKANLEKTIENRNLYDWIDDVQVPMEEQVEVKDGKRKVTLKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI  VMTD  ++ +++T  V GF+G G  P  +TD E+      V   +     +V  
Sbjct: 66  YVLIHMVMTDDSWYVVRNTRGVTGFVGPGSKPVALTDEEV------VSMGIAEKAVNVDV 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVGE + V  GP  +F  +++ ++ EK ++   V +FGR TPVEL +NQ+EK+
Sbjct: 120 EVGESIKVKSGPLENFPAVIQEINTEKKKIKALVNMFGRETPVELDFNQIEKL 172


>gi|160934068|ref|ZP_02081455.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753]
 gi|156866741|gb|EDO60113.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753]
          Length = 173

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 6/173 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   ++   +    L  L+ E+ +P+E V  V+  +    ER+ +
Sbjct: 4   EAKWYVVHTYSGYENKVASNLEKTVENRQLQDLIQEVRVPTEMVTEVKDNKTRQVERKIY 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K V+TD+ ++ +++     GF+G    P P+TD E+  +       V+     V
Sbjct: 64  PSYVLVKMVLTDESWYVVRNIRGCTGFVGPSSKPIPLTDEEVARM------GVEVRQVEV 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +EVG+ V + DGP   F G V+ ++ EK+ V V V +FGR TPVEL  +QVE
Sbjct: 118 SYEVGDSVRIVDGPLDGFVGTVEEMNTEKNSVRVTVSMFGRETPVELELDQVE 170


>gi|269103670|ref|ZP_06156367.1| transcription antitermination protein NusG [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163568|gb|EEZ42064.1| transcription antitermination protein NusG [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 170

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 9   QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
           Q +S  E +  +S+   +   G++    E+ +P+E VV VR G++  SER+FFPGYVL++
Sbjct: 2   QAFSGFEGRVAQSLREHIKMHGMEEYFEEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQ 61

Query: 69  AVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
            VM D+ +H ++  P+V+GF+G   + P+P++D E + I+N+++ A + PV    FE GE
Sbjct: 62  MVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQKASESPVHKTVFEPGE 121

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V V+DGPFA FNG+V+ VD +KSRV V V IFGR TPVEL + QVEK
Sbjct: 122 VVRVTDGPFADFNGVVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEK 169


>gi|87198854|ref|YP_496111.1| transcription antitermination protein nusG [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134535|gb|ABD25277.1| transcription antitermination protein nusG [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 178

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  ++I     R GL  LV  + +P+E V  V++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVRDAIIAEAERIGLSQLVEAVEVPTETVTEVKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
            PGYVL K  M D +YH +K+TPKV GFLGT   P P++D E        E A   P   
Sbjct: 60  MPGYVLAKLAMNDDIYHLVKNTPKVTGFLGTNGKPQPISDKEAARYFGAREQAAAEPRKN 119

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            SV +E+G+ V V+ GPFASFNG+V+ +D +KSRV V V IFGR TPVEL + +VE +
Sbjct: 120 VSVDYEIGDSVKVNAGPFASFNGVVEELDFDKSRVKVSVSIFGRATPVELGFEEVELV 177


>gi|309812402|ref|ZP_07706157.1| transcription termination/antitermination factor NusG [Dermacoccus
           sp. Ellin185]
 gi|308433707|gb|EFP57584.1| transcription termination/antitermination factor NusG [Dermacoccus
           sp. Ellin185]
          Length = 277

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 14/186 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R++   ++  + +I +P E    ++ G+K +  R   PGY
Sbjct: 92  WYVIHSYAGYEKRVKTNLEQRITSLNMEDYIFQIEVPMEDYTEIKNGQKKSGTRVRIPGY 151

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
           VL++  +TD+ +  ++ TP V GF+G    P P++  E+  ++N                
Sbjct: 152 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPYPLSIDEVVTMLNPTFEEPEASAEGAAAS 211

Query: 113 --AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
             +     + V F VGE V V +GPF +    +  ++ +  ++ V V IFGR TPVEL +
Sbjct: 212 SGSASSASADVDFTVGESVTVMEGPFETLPATISEINADTQKIKVLVSIFGRETPVELGF 271

Query: 171 NQVEKI 176
           NQV KI
Sbjct: 272 NQVAKI 277


>gi|29377206|ref|NP_816360.1| transcription antitermination protein NusG [Enterococcus faecalis
           V583]
 gi|227554214|ref|ZP_03984261.1| transcription antitermination protein NusG [Enterococcus faecalis
           HH22]
 gi|229544889|ref|ZP_04433614.1| transcription antitermination protein NusG [Enterococcus faecalis
           TX1322]
 gi|229549155|ref|ZP_04437880.1| transcription antitermination protein NusG [Enterococcus faecalis
           ATCC 29200]
 gi|256854027|ref|ZP_05559392.1| transcription antitermination protein NusG [Enterococcus faecalis
           T8]
 gi|293384585|ref|ZP_06630451.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis R712]
 gi|293386814|ref|ZP_06631385.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis S613]
 gi|294779909|ref|ZP_06745291.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis PC1.1]
 gi|300860945|ref|ZP_07107032.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269242|ref|ZP_07550596.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX4248]
 gi|307271780|ref|ZP_07553051.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0855]
 gi|307276965|ref|ZP_07558075.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX2134]
 gi|307278724|ref|ZP_07559791.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0860]
 gi|307288652|ref|ZP_07568633.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0109]
 gi|307290267|ref|ZP_07570183.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0411]
 gi|312900090|ref|ZP_07759406.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0470]
 gi|312902553|ref|ZP_07761759.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0635]
 gi|312906411|ref|ZP_07765419.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis DAPTO 512]
 gi|312951903|ref|ZP_07770791.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0102]
 gi|312979430|ref|ZP_07791118.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis DAPTO 516]
 gi|29344672|gb|AAO82430.1| transcription antitermination protein NusG [Enterococcus faecalis
           V583]
 gi|227176661|gb|EEI57633.1| transcription antitermination protein NusG [Enterococcus faecalis
           HH22]
 gi|229305709|gb|EEN71705.1| transcription antitermination protein NusG [Enterococcus faecalis
           ATCC 29200]
 gi|229309990|gb|EEN75977.1| transcription antitermination protein NusG [Enterococcus faecalis
           TX1322]
 gi|256710970|gb|EEU26013.1| transcription antitermination protein NusG [Enterococcus faecalis
           T8]
 gi|291078131|gb|EFE15495.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis R712]
 gi|291083817|gb|EFE20780.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis S613]
 gi|294453021|gb|EFG21441.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis PC1.1]
 gi|295113671|emb|CBL32308.1| transcription antitermination protein nusG [Enterococcus sp. 7L76]
 gi|300849984|gb|EFK77734.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498688|gb|EFM68189.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0411]
 gi|306500406|gb|EFM69742.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0109]
 gi|306504585|gb|EFM73788.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0860]
 gi|306506388|gb|EFM75548.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX2134]
 gi|306511658|gb|EFM80657.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0855]
 gi|306514461|gb|EFM83022.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX4248]
 gi|310627565|gb|EFQ10848.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis DAPTO 512]
 gi|310630092|gb|EFQ13375.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0102]
 gi|310634223|gb|EFQ17506.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0635]
 gi|311287801|gb|EFQ66357.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis DAPTO 516]
 gi|311292725|gb|EFQ71281.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0470]
 gi|315025505|gb|EFT37437.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX2137]
 gi|315030451|gb|EFT42383.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX4000]
 gi|315032577|gb|EFT44509.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0017]
 gi|315035100|gb|EFT47032.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0027]
 gi|315143881|gb|EFT87897.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX2141]
 gi|315148690|gb|EFT92706.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX4244]
 gi|315151764|gb|EFT95780.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0012]
 gi|315154307|gb|EFT98323.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0031]
 gi|315155591|gb|EFT99607.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0043]
 gi|315159600|gb|EFU03617.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0312]
 gi|315162108|gb|EFU06125.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0645]
 gi|315165297|gb|EFU09314.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX1302]
 gi|315168710|gb|EFU12727.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX1341]
 gi|315170473|gb|EFU14490.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX1342]
 gi|315174937|gb|EFU18954.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX1346]
 gi|315573767|gb|EFU85958.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0309B]
 gi|315579638|gb|EFU91829.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0630]
 gi|315580281|gb|EFU92472.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX0309A]
 gi|323481651|gb|ADX81090.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis 62]
 gi|327535945|gb|AEA94779.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis OG1RF]
 gi|329578047|gb|EGG59461.1| transcription termination/antitermination factor NusG [Enterococcus
           faecalis TX1467]
          Length = 181

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   +I  R    G+   +  + +P E    V+ G++     + F
Sbjct: 5   ERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P+P+   EI HI+  +  + ++  
Sbjct: 65  PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSD 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V    G+ V + +G F+   G+V  +DEEK ++ V + +FGR T  EL + QV+ I
Sbjct: 125 LEVAL--GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180


>gi|15839227|ref|NP_299915.1| transcription antitermination protein NusG [Xylella fastidiosa
           9a5c]
 gi|71275252|ref|ZP_00651539.1| transcription antitermination protein NusG [Xylella fastidiosa
           Dixon]
 gi|71899980|ref|ZP_00682126.1| transcription antitermination protein NusG [Xylella fastidiosa
           Ann-1]
 gi|170731251|ref|YP_001776684.1| transcription antitermination protein NusG [Xylella fastidiosa M12]
 gi|18203340|sp|Q9PA81|NUSG_XYLFA RecName: Full=Transcription antitermination protein nusG
 gi|9107869|gb|AAF85435.1|AE004071_3 transcription antitermination factor [Xylella fastidiosa 9a5c]
 gi|71164061|gb|EAO13776.1| transcription antitermination protein NusG [Xylella fastidiosa
           Dixon]
 gi|71730267|gb|EAO32352.1| transcription antitermination protein NusG [Xylella fastidiosa
           Ann-1]
 gi|167966044|gb|ACA13054.1| transcription antitermination factor [Xylella fastidiosa M12]
          Length = 185

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/183 (39%), Positives = 115/183 (62%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+SR  +     ++ +P+E VV +R G+K  SE +FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVLI+           + ++ +H +K+TPKV+GF+G   + P P++  E + I+ +V+ 
Sbjct: 62  GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADAILRRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             ++P   V FE G+ V V DGPF  F+G+V+ V+ EK+R+ V V+IFGR TPV+L + Q
Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLEFGQ 181

Query: 173 VEK 175
           V+K
Sbjct: 182 VQK 184


>gi|331701823|ref|YP_004398782.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929]
 gi|329129166|gb|AEB73719.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929]
          Length = 182

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  R    G+   +    +P +    V+ G+      + F
Sbjct: 6   EKQWYVLHTYSGYENKVKMNLDSRKESMGMQDYIFRTVVPEQEEHEVKNGKDKVKMDKTF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E++ ++ ++  + +   
Sbjct: 66  PGYVLVEMIMTDQAWYIVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHED 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             V   +G+ V + DG F   +G V  VD EK R+ V + +FGR T  +L +NQ+
Sbjct: 126 LDVN--IGDTVKIVDGAFTGLDGKVTEVDNEKQRLKVNIEMFGRETSTDLDFNQI 178


>gi|282852730|ref|ZP_06262072.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri 224-1]
 gi|282556472|gb|EFB62092.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri 224-1]
          Length = 183

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E+K  + +  R    G+ + +  + +P E+     +G+K   + + F
Sbjct: 6   EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETIRGKKQEVDEKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+   G G  PSP+ D EIE I+       + P 
Sbjct: 66  PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEP- 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               +EVGE V + DG F+  +G +  ++ EK +++V + +FGR T  EL YNQV+
Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179


>gi|28377493|ref|NP_784385.1| transcription antitermination protein NusG [Lactobacillus plantarum
           WCFS1]
 gi|254555723|ref|YP_003062140.1| transcription antitermination protein NusG [Lactobacillus plantarum
           JDM1]
 gi|28270325|emb|CAD63226.1| transcription antitermination protein NusG [Lactobacillus plantarum
           WCFS1]
 gi|254044650|gb|ACT61443.1| transcription antitermination protein NusG [Lactobacillus plantarum
           JDM1]
          Length = 182

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  Y+  E K   ++  R+   G++  +  + +P E    V+ G+     ++ F
Sbjct: 6   EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GFLG+   G  P+P+   E E I++Q+  +     
Sbjct: 66  PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSA--RH 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  EVGE+V + DG F+  +G +  +D EK ++ V + +FGR T  EL ++QV++I
Sbjct: 124 TELDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181


>gi|308179704|ref|YP_003923832.1| transcription antitermination protein NusG [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045195|gb|ADN97738.1| transcription antitermination protein NusG [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 182

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  Y+  E K   ++  R+   G++  +  + +P E    V+ G+     ++ F
Sbjct: 6   EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GFLG+   G  P+P+   E E I++Q+  +     
Sbjct: 66  PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEETEQILHQLGMSA--RH 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  EVGE+V + DG F+  +G +  +D EK ++ V + +FGR T  EL ++QV++I
Sbjct: 124 TELDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181


>gi|283851491|ref|ZP_06368771.1| NusG antitermination factor [Desulfovibrio sp. FW1012B]
 gi|283573025|gb|EFC21005.1| NusG antitermination factor [Desulfovibrio sp. FW1012B]
          Length = 192

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 106/172 (61%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E +  ++I   +        + E+ +P+E+V+ + KG K  S R+F+PG
Sbjct: 20  RWYIVHTYSGFENRVEQTIREMMRTGQDGGSIEEVVVPTEKVIELVKGEKKTSTRKFYPG 79

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  M D  +H ++  P+V GF+G    P+P+ DSE + I++ + +  ++P     F
Sbjct: 80  YVMVKMAMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYHF 139

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 140 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 191


>gi|227519486|ref|ZP_03949535.1| transcription antitermination protein NusG [Enterococcus faecalis
           TX0104]
 gi|227073098|gb|EEI11061.1| transcription antitermination protein NusG [Enterococcus faecalis
           TX0104]
          Length = 181

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   +I  R    G+   +  + +P E    V+ G++     + F
Sbjct: 5   ERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P+P+   EI HI+  +  + ++  
Sbjct: 65  PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSD 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V    G+ V + +G F+   G+V  +DEEK ++ V + +FGR T  EL + QV+ I
Sbjct: 125 LEVTL--GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180


>gi|218886545|ref|YP_002435866.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757499|gb|ACL08398.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 184

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 109/172 (63%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW+IV  YS  E++  ++I   +       L+ E+ +P+E+V+ + KG K  S R+F+PG
Sbjct: 12  RWFIVHTYSGFEQRVEQTIREMIRTGQAQGLIEEVVVPTEKVIELVKGEKRTSTRKFYPG 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  MTD  +H ++  PKV GF+G    P+P+ DSE E I+  +E+  ++P     F
Sbjct: 72  YVMVKMAMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILTMMESRQEQPRPKFNF 131

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 132 ERGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 183


>gi|297170766|gb|ADI21788.1| transcription antiterminator [uncultured gamma proteobacterium
           HF0130_22O14]
          Length = 177

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++QV+SN E K   ++  R+  +GL   +T++ +P E VV ++ G K  +ER+F
Sbjct: 1   MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSQITDVVVPIEEVVELKGGEKKTTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVLI+  M D+ +H +K  P V+GF+G   E P+P+TD+E  +I+N+VE +   P  
Sbjct: 61  FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              F+ GE V V DGPF  F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK
Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176


>gi|120402246|ref|YP_952075.1| transcription antitermination protein NusG [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955064|gb|ABM12069.1| transcription antitermination protein nusG [Mycobacterium
           vanbaalenii PYR-1]
          Length = 266

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 25/201 (12%)

Query: 1   MTPR-----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M  R     WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++  
Sbjct: 66  MELRLKPGEWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQ 125

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------- 107
             R+  PGY+L++  + D+ +  +++TP V GF+G    PSP++  ++   +        
Sbjct: 126 VNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKK 185

Query: 108 ------------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                       +     ++RPV  V FEVGE V V DGPFA+    +  V+ E+ ++ V
Sbjct: 186 PGKAATSAAAAASSEAGGIERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKV 245

Query: 156 EVVIFGRVTPVELAYNQVEKI 176
            V IFGR TPVEL +NQV KI
Sbjct: 246 LVSIFGRETPVELTFNQVAKI 266


>gi|116629026|ref|YP_814198.1| transcription antiterminator [Lactobacillus gasseri ATCC 33323]
 gi|238853593|ref|ZP_04643962.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri 202-4]
 gi|311111179|ref|ZP_07712576.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri MV-22]
 gi|116094608|gb|ABJ59760.1| transcription antitermination protein nusG [Lactobacillus gasseri
           ATCC 33323]
 gi|238833737|gb|EEQ26005.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri 202-4]
 gi|311066333|gb|EFQ46673.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri MV-22]
          Length = 183

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E+K  + +  R    G+ + +  + +P E+     +G+K   + + F
Sbjct: 6   EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+   G G  PSP+ D EIE I+       + P 
Sbjct: 66  PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEP- 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               +EVGE V + DG F+  +G +  ++ EK +++V + +FGR T  EL YNQV+
Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179


>gi|313683397|ref|YP_004061135.1| transcription antitermination protein nusg [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156257|gb|ADR34935.1| transcription antitermination protein nusG [Sulfuricurvum kujiense
           DSM 16994]
          Length = 176

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY +Q Y+  E+    +I   ++ + L  ++TE+ +P+E V+ V+ G+K  +ER  
Sbjct: 1   MAHRWYSIQTYAGSERSVKAAIENIIAENNLQDVITEVIVPTEDVIEVKNGKKKITERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + GYV     ++ ++ H I+  P+V GF+G    P+P++D++I  I+++V      P   
Sbjct: 61  YSGYVFANMDLSIELQHRIQSLPRVAGFIGESNKPTPLSDNDIAVILDRVTNRS-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           VFF+ GE V + DGPFA+F G V   D E   + + V IFGR TPV+++Y QVEKI+
Sbjct: 120 VFFDNGEMVRIVDGPFANFTGTVDEYDLEHGTLKLNVSIFGRSTPVDISYTQVEKII 176


>gi|319443086|ref|ZP_07992242.1| transcription antitermination protein NusG [Corynebacterium
           variabile DSM 44702]
          Length = 285

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 27/200 (13%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WYI+Q YS  E K   ++  R    G+D  + E+ +P E V  V+ G+K   +++  PG
Sbjct: 85  NWYIIQCYSGYENKVKTNLEMRAQTLGVDQQIHEVVVPIEEVTQVKDGKKKIVKQKLLPG 144

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
           YVL++  + D  +  I+DTP V  F+G    P+PV   E+   +                
Sbjct: 145 YVLVRVELDDPSWSVIRDTPGVTSFVGNAGEPTPVKIREVAKFLLPPETATVPADAEGAD 204

Query: 108 -----------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
                        +          V +EVGE V V  GPFAS +  +  +D   S++   
Sbjct: 205 SASGVDVSATGVAMAPTANSNQVEVDYEVGESVTVLSGPFASVSATISEIDAANSKLKAL 264

Query: 157 VVIFGRVTPVELAYNQVEKI 176
           V IFGR TPVEL ++QVEK+
Sbjct: 265 VSIFGRETPVELEFDQVEKL 284


>gi|67459543|ref|YP_247167.1| transcription antitermination protein NusG [Rickettsia felis
           URRWXCal2]
 gi|75536052|sp|Q4UKC9|NUSG_RICFE RecName: Full=Transcription antitermination protein nusG
 gi|67005076|gb|AAY62002.1| Transcription antitermination protein NusG [Rickettsia felis
           URRWXCal2]
          Length = 192

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 111/173 (64%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  R+++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDMLRRIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+ P V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKETKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVIVTDGPFETFTGTVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190


>gi|323339376|ref|ZP_08079661.1| transcription termination/antitermination factor NusG
           [Lactobacillus ruminis ATCC 25644]
 gi|323093199|gb|EFZ35786.1| transcription termination/antitermination factor NusG
           [Lactobacillus ruminis ATCC 25644]
          Length = 223

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
             +WY++  YS  E K   ++  R    G++  +  + +P E      + G++   + + 
Sbjct: 47  EKKWYVLHTYSGYENKVKSNLESRAESMGMEDYIFRVVVPEEEKCETTKTGKEKVEKLKT 106

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ VMTD+ ++ +++TP V GF+G+    S       E I   + +      + 
Sbjct: 107 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLDEEIQTILRSVGMTRNAD 166

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
              EVG+ + +++G FA   G +  +D EK ++H  + +FGR T  EL+++QVE++V
Sbjct: 167 FDAEVGDTITITEGAFAGQVGKITEIDSEKMKLHAMIDVFGRETDAELSFDQVERLV 223


>gi|294791363|ref|ZP_06756520.1| transcription termination/antitermination factor NusG [Scardovia
           inopinata F0304]
 gi|294457834|gb|EFG26188.1| transcription termination/antitermination factor NusG [Scardovia
           inopinata F0304]
          Length = 326

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R+   GL+  V ++ +P E V    +  K    R   PG
Sbjct: 141 KWYVLHTYSGYEKRVKANIESRVQNFGLEDTVFQVEVPMEEVEKHTEKGKKIISRVRIPG 200

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
           YVLI+    D     I++T  V GF+G+     P++  E+  +M  +             
Sbjct: 201 YVLIRMWPDDDARRIIRETEGVTGFVGSNREAVPLSRQEVVDMMAPMIRSQALKESGDKP 260

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
            A ++    V FE+GE V V+DGPFA+  G++  +     ++ V V IFGR TPVEL ++
Sbjct: 261 KAARQRKIEVSFEMGETVTVTDGPFATMTGVISELQPTTQKLTVLVNIFGRDTPVELGFD 320

Query: 172 QVEKI 176
           QVEK+
Sbjct: 321 QVEKL 325


>gi|289523625|ref|ZP_06440479.1| transcription termination/antitermination factor NusG
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503317|gb|EFD24481.1| transcription termination/antitermination factor NusG
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 180

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 99/175 (56%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++Q Y+  E K   ++  R++  G++  +  + +P E  V V+ G++   +R+ F
Sbjct: 6   ERRWYVIQTYAGYENKVKANLEQRIATMGMEDKIFRVLVPMEERVYVKDGKQKKVKRKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+L++ ++ D+ ++ ++ TP V GF+G G NP P++D E++ +  ++     +P   +
Sbjct: 66  PGYILVEMILDDQSWYVVRHTPGVTGFVGAGNNPIPLSDREVQDVFAKIGREQMKPKVEI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + G+ + V  GPF    G V  V  EK +V   V +FGR T VE  YN + KI
Sbjct: 126 DLKPGDVIRVKSGPFEGQAGTVVEVIPEKGKVKFSVTLFGRETIVEADYNDLTKI 180


>gi|89257018|ref|YP_514380.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315379|ref|YP_764102.1| transcription antitermination protein NusG [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118498141|ref|YP_899191.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. novicida U112]
 gi|167009399|ref|ZP_02274330.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. holarctica FSC200]
 gi|169656748|ref|YP_001429284.2| transcription termination/antitermination factor NusG [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|89144849|emb|CAJ80188.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130278|gb|ABI83465.1| transcription antitermination protein NusG [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118424047|gb|ABK90437.1| transcription antitermination protein nusG [Francisella novicida
           U112]
 gi|164551816|gb|ABU62328.2| transcription termination/antitermination factor NusG [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 177

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 2/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQV+S  EK+    +   +  +GL +    I +P+E VV ++ G+K  SER++FPGY
Sbjct: 3   WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122
           VLI+A ++   ++ +K  P+V+  +G+   P P++ +E++ I+  VE   +   P     
Sbjct: 63  VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSKSTVEPRLRKS 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + VGE V V +GPF  F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175


>gi|18311400|ref|NP_563334.1| transcription antitermination protein NusG [Clostridium perfringens
           str. 13]
 gi|110800065|ref|YP_697107.1| transcription antitermination protein NusG [Clostridium perfringens
           ATCC 13124]
 gi|110803104|ref|YP_699676.1| transcription antitermination protein NusG [Clostridium perfringens
           SM101]
 gi|169344019|ref|ZP_02865009.1| transcription termination/antitermination factor NusG [Clostridium
           perfringens C str. JGS1495]
 gi|18146084|dbj|BAB82124.1| transcription antitermination protein [Clostridium perfringens str.
           13]
 gi|110674712|gb|ABG83699.1| transcription termination/antitermination factor NusG [Clostridium
           perfringens ATCC 13124]
 gi|110683605|gb|ABG86975.1| transcription termination/antitermination factor NusG [Clostridium
           perfringens SM101]
 gi|169297843|gb|EDS79939.1| transcription termination/antitermination factor NusG [Clostridium
           perfringens C str. JGS1495]
          Length = 173

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 8/178 (4%)

Query: 1   MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
           M+   RWY+V  YS  E K   ++   +    L+ L+ +I +P E     + G+   + +
Sbjct: 1   MSDRARWYVVHTYSGYENKVKANLEKTIENRNLESLILDIQVPMEESAEEKDGKIKVTLK 60

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           + FPGYV++  VMTD+ ++ +++T  V GF+G G  P P+TD E+E +       V +  
Sbjct: 61  KKFPGYVIVNMVMTDESWYVVRNTRGVTGFVGPGSKPVPLTDEEVESM------GVMKTA 114

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +  EVGE + +  G  + F  I++ ++ EK ++   V +FGR T  EL +NQVEK+
Sbjct: 115 MDIDLEVGETINIISGALSGFAAIIQEINVEKGKIKALVDMFGRETLAELDFNQVEKL 172


>gi|28199872|ref|NP_780186.1| transcription antitermination protein NusG [Xylella fastidiosa
           Temecula1]
 gi|182682624|ref|YP_001830784.1| transcription antitermination protein NusG [Xylella fastidiosa M23]
 gi|32129806|sp|Q87A27|NUSG_XYLFT RecName: Full=Transcription antitermination protein nusG
 gi|28057993|gb|AAO29835.1| transcription antitermination factor [Xylella fastidiosa Temecula1]
 gi|182632734|gb|ACB93510.1| NusG antitermination factor [Xylella fastidiosa M23]
 gi|307578905|gb|ADN62874.1| transcription antitermination protein NusG [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 185

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/183 (39%), Positives = 115/183 (62%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V  YS  EK   +++  R+SR  +     ++ +P+E VV +R G+K  SE +FFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61

Query: 63  GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           GYVLI+           + ++ +H +K+TPKV+GF+G   + P P++  E + I+ +V+ 
Sbjct: 62  GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQD 121

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             ++P   V FE G+ V V DGPF  F+G+V+ V+ EK+R+ V V+IFGR TPV+L + Q
Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQ 181

Query: 173 VEK 175
           V+K
Sbjct: 182 VQK 184


>gi|227891221|ref|ZP_04009026.1| transcription antitermination protein NusG [Lactobacillus
           salivarius ATCC 11741]
 gi|227867095|gb|EEJ74516.1| transcription antitermination protein NusG [Lactobacillus
           salivarius ATCC 11741]
          Length = 201

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 108/180 (60%), Gaps = 6/180 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
             +WY++  Y+  E K  E++  R +  G++  +  + +P E      + G++   + + 
Sbjct: 24  EKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKT 83

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+ D EI HI++++  + +  
Sbjct: 84  FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSR-- 141

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            S+   EVG+ V + DG F+   G +  +D EK ++ V++ +FGR T  EL Y+QV+K+V
Sbjct: 142 HSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 201


>gi|184154743|ref|YP_001843083.1| transcription antitermination protein [Lactobacillus fermentum IFO
           3956]
 gi|260663228|ref|ZP_05864120.1| transcription termination/antitermination factor NusG
           [Lactobacillus fermentum 28-3-CHN]
 gi|183226087|dbj|BAG26603.1| transcription antitermination protein [Lactobacillus fermentum IFO
           3956]
 gi|260552420|gb|EEX25471.1| transcription termination/antitermination factor NusG
           [Lactobacillus fermentum 28-3-CHN]
          Length = 181

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E +   ++  R    G++  + ++ +P E V  V+ G+    E + F
Sbjct: 5   EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++  ++TP V GFL   G G  P+P+   E++ I+ ++   V R  
Sbjct: 65  PGYVLVEMVMTDQAWYVARNTPGVTGFLGSHGGGSKPTPLLPEEVDRILVRMGQDVAR-- 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +   VG+ + +  G FA  +G V  VD +K ++ VE+ +FGR+T  EL +NQ++ +
Sbjct: 123 TDINVAVGDNIKIIAGAFADLSGKVIEVDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 180


>gi|148381434|ref|YP_001255975.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933840|ref|YP_001385809.1| transcription antitermination protein NusG [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936508|ref|YP_001389216.1| transcription antitermination protein NusG [Clostridium botulinum A
           str. Hall]
 gi|153940614|ref|YP_001392847.1| transcription antitermination protein NusG [Clostridium botulinum F
           str. Langeland]
 gi|168178819|ref|ZP_02613483.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum NCTC 2916]
 gi|168181851|ref|ZP_02616515.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum Bf]
 gi|170755479|ref|YP_001783134.1| transcription antitermination protein NusG [Clostridium botulinum
           B1 str. Okra]
 gi|170761546|ref|YP_001788834.1| transcription antitermination protein NusG [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226950946|ref|YP_002806037.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum A2 str. Kyoto]
 gi|237796955|ref|YP_002864507.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum Ba4 str. 657]
 gi|148290918|emb|CAL85054.1| transcription antitermination protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929884|gb|ABS35384.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932422|gb|ABS37921.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum A str. Hall]
 gi|152936510|gb|ABS42008.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum F str. Langeland]
 gi|169120691|gb|ACA44527.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum B1 str. Okra]
 gi|169408535|gb|ACA56946.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum A3 str. Loch Maree]
 gi|182670290|gb|EDT82266.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum NCTC 2916]
 gi|182674794|gb|EDT86755.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum Bf]
 gi|226842758|gb|ACO85424.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum A2 str. Kyoto]
 gi|229263161|gb|ACQ54194.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum Ba4 str. 657]
 gi|295320826|gb|ADG01204.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum F str. 230613]
 gi|322807819|emb|CBZ05394.1| transcription antitermination protein NusG [Clostridium botulinum
           H04402 065]
          Length = 174

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L H + +I +P E  V V+ G+K  + ++ FPG
Sbjct: 7   KWYVVHTYSGYENKVKVNLQKTVDNRNLHHWIFDIQVPMEEQVEVKDGKKKITLKKTFPG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +MTD  ++ +++T  V GF+G G  P P+T+ E+      +   ++     V  
Sbjct: 67  YVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LSMGIKEKQPEVDV 120

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVGE V V  GP   F   ++ ++ EK ++   V +FGR TPVEL +NQ+EK+
Sbjct: 121 EVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173


>gi|328949968|ref|YP_004367303.1| NusG antitermination factor [Marinithermus hydrothermalis DSM
           14884]
 gi|328450292|gb|AEB11193.1| NusG antitermination factor [Marinithermus hydrothermalis DSM
           14884]
          Length = 185

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 9/182 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V  Y   E K   +I  R    G++  + ++ IP+E +V  R+G +K    R+
Sbjct: 1   MSIEWYAVHTYVGYEDKVKANIEKRAKALGMEDKIFQVLIPTEEIVEHREGGKKEVVRRK 60

Query: 60  FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VE 111
            FPGYV ++  + D        +  ++ TP V GF+GT   P P+T  E++ I+    V 
Sbjct: 61  LFPGYVFVQMDLGDNPEDPNEAWEVVRHTPGVTGFVGTATRPVPLTPDEVQGILEASGVA 120

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              + P   V F+ G+ V V  GPFA F G+V  +  E+++V V V IFGR TPVEL ++
Sbjct: 121 GKKEGPKPQVSFKEGDVVRVVSGPFADFTGVVSEISPERNKVKVLVSIFGRETPVELDFS 180

Query: 172 QV 173
           QV
Sbjct: 181 QV 182


>gi|220927765|ref|YP_002504674.1| NusG antitermination factor [Clostridium cellulolyticum H10]
 gi|219998093|gb|ACL74694.1| NusG antitermination factor [Clostridium cellulolyticum H10]
          Length = 172

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    +   + +I +P E  + ++ G+K  + ++ FPG
Sbjct: 6   KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P++D E++ +       V+     V +
Sbjct: 66  YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDEEVKAM------GVEEFAPEVDY 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EV + V V+ GP  +F GIV+ ++ EK +V V V +FGR TPVEL   Q++KI
Sbjct: 120 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 172


>gi|56707309|ref|YP_169205.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669779|ref|YP_666336.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134301348|ref|YP_001121316.1| transcription termination factor NusG [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931078|ref|YP_001891062.1| transcription termination/antitermination factor NusG [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|56603801|emb|CAG44772.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320112|emb|CAL08155.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134049125|gb|ABO46196.1| transcription termination factor NusG [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187711987|gb|ACD30284.1| transcription termination/antitermination factor NusG [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|282158434|gb|ADA77825.1| transcription termination factor NusG [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 177

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 2/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQV+S  EK+    +   +  +GL +    I +P+E VV ++ G+K  SER++FPGY
Sbjct: 3   WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122
           VLI+A ++   ++ +K  P+V+  +G+   P P++ +E++ I++ VE   +   P     
Sbjct: 63  VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKS 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + VGE V V +GPF  F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175


>gi|300857259|ref|YP_003782243.1| transcription antitermination protein NusG [Clostridium ljungdahlii
           DSM 13528]
 gi|300437374|gb|ADK17141.1| transcription antitermination protein NusG [Clostridium ljungdahlii
           DSM 13528]
          Length = 173

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L   + ++ +P E  V ++ G+K  + ++ FPG
Sbjct: 6   KWYVVHTYSGYENKVKVNLEKTIENRNLYDWIDDVQVPMEEQVEIKDGKKKITLKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI  +MTD  ++ +++T  V GF+G G  P P+TD E++ +       +     +V  
Sbjct: 66  YVLIHMIMTDDSWYIVRNTRGVTGFVGPGSKPVPLTDEEVKDM------GISEKPVNVDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP  +F  +++ ++ EK ++   V +FGR TPVEL +NQ+EKI
Sbjct: 120 SVGENVKVKSGPLENFLAVIQEINTEKRKIKALVNMFGRETPVELDFNQIEKI 172


>gi|295698613|ref|YP_003603268.1| transcription termination/antitermination factor NusG [Candidatus
           Riesia pediculicola USDA]
 gi|291157364|gb|ADD79809.1| transcription termination/antitermination factor NusG [Candidatus
           Riesia pediculicola USDA]
          Length = 182

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++Q +S  E K  + +   +    +D    EI IPSE ++ ++ G++  SER+FFP
Sbjct: 8   MKWYVIQSFSGFETKVRKYLKKYIKLYSMDSYFGEIMIPSEGIIEMKGGQRRKSERKFFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++ +M +K +H I+  PKV+GF+G   + P+ V   EIE I+ +++    +P    
Sbjct: 68  GYVLVQMIMNEKTWHFIRGIPKVMGFVGGTSDRPASVHQREIEDIVEKLQKIGDQPRPKT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE + VS GPFA FNGI + +D EK+R+ V V IFGR TPVEL ++QVEKI
Sbjct: 128 LFEPGEVIRVSSGPFADFNGIAEEIDYEKNRLKVSVSIFGRSTPVELDFSQVEKI 182


>gi|15896397|ref|NP_349746.1| transcription antitermination protein NusG [Clostridium
           acetobutylicum ATCC 824]
 gi|15026215|gb|AAK81086.1|AE007810_5 Transcription antiterminator NusG [Clostridium acetobutylicum ATCC
           824]
          Length = 173

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I   +    L +L+ +I +P +  V  + G+K  + ++ FP 
Sbjct: 6   KWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFPS 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIK VMTD+ ++ +++T    GF+G G  P P+TD E++ +  +        V+S+  
Sbjct: 66  YVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSMGIR------EKVASIDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP      +++ ++ EK ++   V +FGR TPVEL +NQ+EK+
Sbjct: 120 VVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 172


>gi|90962215|ref|YP_536131.1| transcription antitermination protein [Lactobacillus salivarius
           UCC118]
 gi|301299871|ref|ZP_07206105.1| transcription termination/antitermination factor NusG
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821409|gb|ABE00048.1| Transcription antitermination protein [Lactobacillus salivarius
           UCC118]
 gi|300214879|gb|ADJ79295.1| Transcription antitermination protein nusG [Lactobacillus
           salivarius CECT 5713]
 gi|300852542|gb|EFK80192.1| transcription termination/antitermination factor NusG
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 186

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 108/180 (60%), Gaps = 6/180 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
             +WY++  Y+  E K  E++  R +  G++  +  + +P E      + G++   + + 
Sbjct: 9   EKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKT 68

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+ D EI HI++++  + +  
Sbjct: 69  FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSR-- 126

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            S+   EVG+ V + DG F+   G +  +D EK ++ V++ +FGR T  EL Y+QV+K+V
Sbjct: 127 HSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 186


>gi|312897640|ref|ZP_07757057.1| transcription termination/antitermination factor NusG [Megasphaera
           micronuciformis F0359]
 gi|310621273|gb|EFQ04816.1| transcription termination/antitermination factor NusG [Megasphaera
           micronuciformis F0359]
          Length = 179

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  EKK  +++  ++   GL++++  I +P E  + V+ GRK    R+ +
Sbjct: 4   EKNWYVIHTYSGYEKKVKDNLERKVRSMGLENVIERILVPEEDEIDVKDGRKRTVRRKIY 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV ++  + D+ ++ +++TP V GF+G+   P P+   E+  I+ + +   +     +
Sbjct: 64  PGYVFVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLEPQEVRRIL-KSQGIEKEVRPQI 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             E+GE+V +  GPF +F   +  ++ EK  +   + +FGR T VE+ Y+Q+EK
Sbjct: 123 SVEIGEQVRIISGPFDNFYATITEINNEKGTLKGLIDMFGRETSVEVDYSQIEK 176


>gi|326386500|ref|ZP_08208123.1| transcription antitermination protein nusG [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209161|gb|EGD59955.1| transcription antitermination protein nusG [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 178

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWYI+  YS  E K  E+I     R GL  LV  + +P+E V  V++G+KV  ER+F
Sbjct: 1   MA-RWYIIHAYSGFENKVREAIIAEAERKGLSQLVEAVEVPTETVTEVKRGKKVQVERKF 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--V 118
            PGYVL K  M D +YH +K+T KV GFLGT   P P+++ E +      E A   P   
Sbjct: 60  MPGYVLAKLTMNDDIYHLVKNTAKVTGFLGTNNKPQPISEKEAQRYFGAREQAASEPSNH 119

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            SV +E+G+ V V+ GPFASFNG+V+ +D EK RV V V IFGR TPVEL++ +VE +
Sbjct: 120 ISVDYEIGDSVKVNAGPFASFNGVVEELDFEKQRVKVSVSIFGRATPVELSFEEVELV 177


>gi|297179994|gb|ADI16219.1| transcription antiterminator [uncultured bacterium HF0010_16H03]
          Length = 175

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++Q YS  E+K   ++  ++  + L     EI IP+E++V ++ G K  +ER+FFP
Sbjct: 1   MDWYVIQAYSGYEQKVKIALEEKIELNNLSDKFGEILIPTEQIVELKGGSKKTTERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GY+LI+ ++ D  +  ++ T +V GF+G   + P P+++ ++ +I+N++E     P    
Sbjct: 61  GYILIQMLLEDDSWQLVQSTARVSGFVGGTKDRPLPISEDDVNNIINRIEVGEDAPAPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE V V DGPF  FNG+V+NVD E++ V V V I GR TPV+L + Q+EK
Sbjct: 121 IYEPGEVVRVCDGPFNDFNGVVENVDYERNMVKVSVQILGRATPVDLEFMQIEK 174


>gi|298531097|ref|ZP_07018498.1| NusG antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509120|gb|EFI33025.1| NusG antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 197

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 114/173 (65%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWYI+  YS  E++   +I   +       L+ EI +P+E+VV + KG+K  S R+FFP
Sbjct: 24  PRWYIIHTYSGYEQRVERTIKEMMRTGQDKGLIEEIVVPTEQVVELVKGQKKTSTRKFFP 83

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL+K V  D+ +H I+  PKV GF+G+   PSP+TD+E + I++ V++  ++P     
Sbjct: 84  GYVLVKMVFNDESWHLIQSIPKVTGFIGSKNKPSPITDAEADKILSTVQSRKEQPRPKFH 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  G+ + V DGPFA+FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 144 FARGDEIRVVDGPFANFNGVVEDVNYDKGKLKVSVSIFGRQTPVELDFVQVSK 196


>gi|239907757|ref|YP_002954498.1| transcription antitermination protein NusG [Desulfovibrio
           magneticus RS-1]
 gi|239797623|dbj|BAH76612.1| transcription antitermination protein NusG [Desulfovibrio
           magneticus RS-1]
          Length = 187

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 66/172 (38%), Positives = 105/172 (61%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E +   ++   +        + E+ +P+E+++ + KG K  S R+F+PG
Sbjct: 15  RWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTSTRKFYPG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  M D  +H ++  P+V GF+G    P+P+ DSE + I++ + +  ++P     F
Sbjct: 75  YVMVKMAMDDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEAQKILSLMVSRQEQPRPKYHF 134

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 135 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186


>gi|332184687|gb|AEE26941.1| Transcription antitermination protein NusG [Francisella cf.
           novicida 3523]
          Length = 177

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 2/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQV+S  EK+    +   +  +GL +    I +P+E VV ++ G+K  SER++FPGY
Sbjct: 3   WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122
           VLI+A ++   ++ +K  P+V+  +G+   P P++ +E+E I+  VE   +   P     
Sbjct: 63  VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVERILGFVEGSKSTVEPRLRKS 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + VGE V V +GPF  F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175


>gi|294814454|ref|ZP_06773097.1| Transcription antitermination protein nusG [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442843|ref|ZP_08217577.1| transcription antitermination protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|109942286|emb|CAJ84542.1| NusG protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327053|gb|EFG08696.1| Transcription antitermination protein nusG [Streptomyces
           clavuligerus ATCC 27064]
          Length = 304

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAKG 236

Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                    V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 237 EPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 297 SFDQIQK 303


>gi|300932756|ref|ZP_07148012.1| transcription antitermination protein NusG [Corynebacterium
           resistens DSM 45100]
          Length = 313

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 1   MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M      WYIVQ YS  E K   ++  R    G+D  + E+ +P E V  +R G++   +
Sbjct: 107 MKKLPGEWYIVQCYSGYENKVKTNLEMRAQTLGVDEHIHEVVVPIEEVTELRDGKRKQVK 166

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------- 107
           R+  PGYVL++  + D  +  ++DTP V  F+G    P+PV   E+   +          
Sbjct: 167 RKLLPGYVLVRMELEDAAWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPAS 226

Query: 108 -----------------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
                                         V +EVGE V +  GPFAS +  +  +D   
Sbjct: 227 TEEGTEEAGAVDVSATGVATPPKPASESVVVDYEVGESVTILSGPFASVSATISEIDTTA 286

Query: 151 SRVHVEVVIFGRVTPVELAYNQVEKI 176
           +R+   V IFGR TPVEL ++QVEK+
Sbjct: 287 NRLKAMVSIFGRETPVELEFDQVEKL 312


>gi|300087458|ref|YP_003757980.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527191|gb|ADJ25659.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 178

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 107/174 (61%), Gaps = 2/174 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  YS  E++  +++  R+    L+  ++ + +P+E  V V+ G++    R+  P
Sbjct: 7   KKWYVVHTYSGHEERVRKNLNERIETLSLEDEISRVEVPTEEEVEVKNGQRRTVRRKILP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV+++ VM D+ ++ ++ TP V GF+G    P+P+  +E++ I+ Q+E   + P   V 
Sbjct: 67  GYVIVQMVMNDQNWNIVRHTPGVTGFVGIEGKPTPLQQNEVDRIITQME--AEAPRIKVG 124

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F++G+ V V DGPF  F G+V  V  +K +V V + +FGR TPVEL + QVEK+
Sbjct: 125 FKIGQSVRVVDGPFVDFIGMVDEVHADKGKVKVLLSLFGRETPVELDFLQVEKL 178


>gi|323700795|ref|ZP_08112707.1| NusG antitermination factor [Desulfovibrio sp. ND132]
 gi|323460727|gb|EGB16592.1| NusG antitermination factor [Desulfovibrio desulfuricans ND132]
          Length = 181

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 113/172 (65%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E++  +++   +       L+ E+ +P+E++V + KG +  S R+F+PG
Sbjct: 9   RWYIVHTYSGFEQRVEQTVREMMRTGQDKGLIEEVVMPTEKIVEMVKGERKTSTRKFYPG 68

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y++IK ++TD  +H I+  P+V GF+G    P+P+ DSE E+I+N +E+  ++P     F
Sbjct: 69  YIMIKMILTDDSWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFNF 128

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K
Sbjct: 129 ERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 180


>gi|326390674|ref|ZP_08212229.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
 gi|325993352|gb|EGD51789.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
          Length = 177

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L HL+ +I +P+E+VV ++ G+K   ER+ FPG
Sbjct: 11  KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K VMTD  ++ +++T  V GF+G G  P P+T++E+  +       ++   ++V  
Sbjct: 71  YVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDL 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V + V V  GPF +F G+V+ +  E+ +  V + +FGR TPVE    Q++KI
Sbjct: 125 NVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 177


>gi|167036788|ref|YP_001664366.1| transcription antitermination protein NusG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039507|ref|YP_001662492.1| transcription antitermination protein NusG [Thermoanaerobacter sp.
           X514]
 gi|256752774|ref|ZP_05493619.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300915242|ref|ZP_07132557.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
 gi|307267205|ref|ZP_07548711.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307725166|ref|YP_003904917.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
 gi|320115210|ref|YP_004185369.1| transcription termination/antitermination factor NusG
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853747|gb|ABY92156.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
 gi|166855622|gb|ABY94030.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748335|gb|EEU61394.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300888966|gb|EFK84113.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
 gi|306917784|gb|EFN48052.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307582227|gb|ADN55626.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
 gi|319928301|gb|ADV78986.1| transcription termination/antitermination factor NusG
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 174

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L HL+ +I +P+E+VV ++ G+K   ER+ FPG
Sbjct: 8   KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K VMTD  ++ +++T  V GF+G G  P P+T++E+  +       ++   ++V  
Sbjct: 68  YVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDL 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V + V V  GPF +F G+V+ +  E+ +  V + +FGR TPVE    Q++KI
Sbjct: 122 NVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 174


>gi|71279510|ref|YP_271421.1| transcription termination/antitermination factor NusG [Colwellia
           psychrerythraea 34H]
 gi|71145250|gb|AAZ25723.1| transcription termination/antitermination factor NusG [Colwellia
           psychrerythraea 34H]
          Length = 195

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/172 (40%), Positives = 101/172 (58%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  E +  +++   +   GL     EI +P+E VV +R G+K  S R+FFPG
Sbjct: 22  RWYVVQAFSGYEGRVQKTLLEHIEIHGLQEKFGEILVPTEEVVEMRAGQKRKSSRKFFPG 81

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++  M    +H +K  P+V+GF+G   +       +    + Q      +P     F
Sbjct: 82  YVLVQMEMDVDAWHLVKSVPRVLGFIGGTSDRPAPITKKEADRILQRLEETDKPKPKTLF 141

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E GE + V DGPFA FNG+V+ +D EK+R+ V V+IFGR TPV+L + QVEK
Sbjct: 142 EPGEVIRVIDGPFADFNGVVEELDYEKNRIKVSVLIFGRSTPVDLEFGQVEK 193


>gi|289579158|ref|YP_003477785.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|289528871|gb|ADD03223.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
          Length = 176

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L HL+ +I +P+E+VV ++ G+K   ER+ FPG
Sbjct: 10  KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 69

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +MTD  ++ +++T  V GF+G G  P P+T++E+  +       ++   ++V F
Sbjct: 70  YVLVKMIMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V + V V  GPF +F G+V+ +  E+ +  V + +FGR TPVE    Q++KI
Sbjct: 124 NVKDTVRVISGPFENFIGVVEEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 176


>gi|152964644|ref|YP_001360428.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216]
 gi|151359161|gb|ABS02164.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216]
          Length = 320

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W+++  Y+  E +   ++  R++   ++  + ++ +P E VV V+ G + N  R  
Sbjct: 131 MPGEWFVIHSYAGYENRVKTNLETRMTSLNMEDYIFQVEVPMEEVVEVKNGTRKNVRRVR 190

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
            PGYVL++  +TD+ +  ++ TP V GF+G    P P+++ EI  ++        +    
Sbjct: 191 IPGYVLVRMDLTDESWGAVRHTPGVTGFVGNTHQPVPLSNDEIFSMLAPTLQPTAKAGEK 250

Query: 117 ----------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                     P   V FEVGE V V +GPF +    +  +  ++ ++ V V IFGR TPV
Sbjct: 251 TETGGGTASAPARVVDFEVGESVTVMEGPFETLPATISEISADRQKLTVLVSIFGRETPV 310

Query: 167 ELAYNQVEKI 176
           EL +NQV KI
Sbjct: 311 ELNFNQVAKI 320


>gi|290968177|ref|ZP_06559722.1| transcription termination/antitermination factor NusG [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781852|gb|EFD94435.1| transcription termination/antitermination factor NusG [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 179

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 107/173 (61%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K + ++  ++   GL++++  I +P E  V ++ G+K   +R+ FP
Sbjct: 5   MKWYVIHTYSGYENKVMATLERKVKSMGLENVINRILVPMEDEVDMKDGKKRTVKRKIFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  + D+ ++ +++TP V GF+G+   P+P+T+ E++ I+ + +     P   + 
Sbjct: 65  GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPTPLTEEEVKSIL-KSQGVDAEPKIQIA 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            ++GE+V ++ GPF +F   +  +++EK  +   + +FGR T VE+ Y+Q+EK
Sbjct: 124 VDIGEQVRITSGPFENFIATITEINKEKGTLKGLIDMFGRETSVEVDYSQIEK 176


>gi|257069526|ref|YP_003155781.1| transcription antitermination protein nusG [Brachybacterium faecium
           DSM 4810]
 gi|256560344|gb|ACU86191.1| transcription antitermination protein nusG [Brachybacterium faecium
           DSM 4810]
          Length = 301

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 11/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E +    +  R     ++  + E+ +P E    V+ G+K    R   PGY
Sbjct: 119 WYVIHSYSGHENRVKTQLATRTETQDMEEYIFEVQVPMEDATEVKNGQKKIVRRVRVPGY 178

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++  +T + +  ++DTP V GF+G   +P+P++  EI  ++       ++  SS    
Sbjct: 179 VLVRMDLTTESWRVVRDTPGVTGFVGNATDPTPLSFDEIYSLLAPSVGLPEKKRSSGGSK 238

Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                    F+VGE V V DGPF +    +  +  E  ++ V V IFGR TPVELA++QV
Sbjct: 239 AAAAQKVPDFQVGESVTVMDGPFETMPATISEIHSEAQKLQVLVSIFGRETPVELAFDQV 298

Query: 174 EKI 176
            KI
Sbjct: 299 AKI 301


>gi|257867884|ref|ZP_05647537.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30]
 gi|257874213|ref|ZP_05653866.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10]
 gi|257876778|ref|ZP_05656431.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20]
 gi|257801967|gb|EEV30870.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30]
 gi|257808377|gb|EEV37199.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10]
 gi|257810944|gb|EEV39764.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20]
          Length = 180

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   ++  R    G+   +  + +P E     + G+      + F
Sbjct: 5   EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   EI  I+  +  + +   
Sbjct: 65  PGYVLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVE 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  E+GE V + +G F+   G V  +DEEK ++ V + +FGR T  EL + QV+KI
Sbjct: 125 LEV--EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180


>gi|291280160|ref|YP_003496995.1| transcriptional antitermination factor NusG [Deferribacter
           desulfuricans SSM1]
 gi|290754862|dbj|BAI81239.1| transcriptional antitermination factor NusG [Deferribacter
           desulfuricans SSM1]
          Length = 174

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/176 (38%), Positives = 110/176 (62%), Gaps = 3/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  EK+  + +  ++   G++  + E+ IP+E VV ++KG+K  S++R 
Sbjct: 1   MAKQWYVVHTYSGFEKRVKQLLEEKVKNLGIEDEIDEVLIPTEDVVELKKGKKKISKKRT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   M  K +H +K  PKV GF+G G NP P+ + +++ ++  V+   Q P  +
Sbjct: 61  FPGYILVHMEMNTKNWHIVKSIPKVTGFVG-GINPVPIPEQDVKAMLELVKE--QAPRLA 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             F  G++V V DGPF  F G ++ V+ +K +V V V IFGR TP+EL + QV++I
Sbjct: 118 SKFIKGDKVEVIDGPFQGFTGEIEEVNPDKEKVKVIVSIFGRQTPIELDFLQVKRI 173


>gi|238650690|ref|YP_002916543.1| transcription antitermination protein NusG [Rickettsia peacockii
           str. Rustic]
 gi|238624788|gb|ACR47494.1| transcription antitermination protein NusG [Rickettsia peacockii
           str. Rustic]
          Length = 192

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 109/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+    E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190


>gi|258406197|ref|YP_003198939.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692]
 gi|257798424|gb|ACV69361.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692]
          Length = 179

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 111/174 (63%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWYIV  +S  E++  ++I   +     + L+ E+ +P+E+VV + KG+K  S R+F+
Sbjct: 5   SARWYIVHAFSGYEQRVEKTIAEMIRSGQGEGLIEEVIVPTEKVVEMVKGQKKTSTRKFY 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K ++ DK +H I+  PKV GF+G  + P P+T  E + I+  +E+  ++P    
Sbjct: 65  PGYVLVKMILNDKTWHLIQSIPKVTGFVGGQKRPKPLTQKEADQILQTIESRKEQPRPKF 124

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE G+ V V DGPF+ FNG V+ V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 125 HFERGDEVRVIDGPFSGFNGEVEEVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 178


>gi|254391410|ref|ZP_05006613.1| transcription antitermination protein nusG [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705100|gb|EDY50912.1| transcription antitermination protein nusG [Streptomyces
           clavuligerus ATCC 27064]
          Length = 299

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAKG 231

Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                    V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 232 EPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 291

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 292 SFDQIQK 298


>gi|256848158|ref|ZP_05553602.1| transcription termination/antitermination factor NusG
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715218|gb|EEU30195.1| transcription termination/antitermination factor NusG
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 182

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 102/175 (58%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E +   ++  R    G++  +  + +P E V +V+ G+   +E + F
Sbjct: 5   EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEETVRTVKDGQAKETEEKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++  ++TP V GFL   G G  P+P+   E++ IM ++ A V R  
Sbjct: 65  PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMGADVAR-- 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           + +   VG+ + +  GPFA   G V  VD +K +V+V++ +FGR T  E+ ++Q+
Sbjct: 123 TDIDVNVGDSIKIIAGPFADLTGKVTAVDHDKMKVNVDIEMFGRQTSAEVGFDQI 177


>gi|218296037|ref|ZP_03496806.1| NusG antitermination factor [Thermus aquaticus Y51MC23]
 gi|218243414|gb|EED09943.1| NusG antitermination factor [Thermus aquaticus Y51MC23]
          Length = 184

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 8/183 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V  Y   E+KA  ++  R+   G++  + ++ IP+E VV VR+G +K   +R+
Sbjct: 1   MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVEVREGGKKEVVKRK 60

Query: 60  FFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112
            FPGY+ ++  + D+      +  ++ TP + GF+G G  P P++  E+ HI+    +  
Sbjct: 61  LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             + P + V F  G++V V  GPFA F G V  ++ EK +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVGFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180

Query: 173 VEK 175
           V K
Sbjct: 181 VVK 183


>gi|157825315|ref|YP_001493035.1| transcription antitermination protein NusG [Rickettsia akari str.
           Hartford]
 gi|157799273|gb|ABV74527.1| transcription antitermination protein NusG [Rickettsia akari str.
           Hartford]
          Length = 192

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 111/173 (64%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTVSGAEKRIKEDLLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  +TDK +H +K+   V GFLG+   P  +TDSEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNITDKSWHLVKNISGVTGFLGSKTTPKALTDSEIQNIFNNLEAEAKEAKNSKV 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G+V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVIVTDGPFETFTGMVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190


>gi|23465850|ref|NP_696453.1| transcription antitermination protein [Bifidobacterium longum
           NCC2705]
 gi|317482952|ref|ZP_07941956.1| transcription termination/antitermination factor NusG
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691931|ref|YP_004221501.1| transcription antiterminator [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|23326549|gb|AAN25089.1| probable transcription antitermination protein [Bifidobacterium
           longum NCC2705]
 gi|291516534|emb|CBK70150.1| transcription termination/antitermination factor NusG
           [Bifidobacterium longum subsp. longum F8]
 gi|316915559|gb|EFV36977.1| transcription termination/antitermination factor NusG
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456787|dbj|BAJ67409.1| putative transcription antiterminator [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 297

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291

Query: 172 QVEKI 176
           QV+K+
Sbjct: 292 QVQKL 296


>gi|302390946|ref|YP_003826766.1| transcription antitermination protein nusG [Acetohalobium
           arabaticum DSM 5501]
 gi|302203023|gb|ADL11701.1| transcription antitermination protein nusG [Acetohalobium
           arabaticum DSM 5501]
          Length = 178

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 8/181 (4%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS- 56
           M+ +   WY +  YS  E K   ++  R+    ++  + +I IPS+  V V+   +    
Sbjct: 1   MSKKEPEWYAIHTYSGRENKVKSNLEQRIKTIDMEEKIIDILIPSKDEVKVKDEGEKKVS 60

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQ 115
           E RFFPGYVLIK +M D+ ++ +++TP VIGF G +G  P PV+D E+  I N++    Q
Sbjct: 61  EERFFPGYVLIKMIMDDESWYVVRNTPGVIGFAGASGTKPVPVSDPEVRTIKNEMGLQSQ 120

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                +  EVG+ V V DGPF  F G ++ ++ +KS++ V V +FGR TPVEL ++QVE 
Sbjct: 121 ---VDIDLEVGDEVRVVDGPFEDFAGEIQEINLDKSKLTVLVSMFGRQTPVELDFDQVED 177

Query: 176 I 176
           I
Sbjct: 178 I 178


>gi|257869763|ref|ZP_05649416.1| transcription antiterminator NusG [Enterococcus gallinarum EG2]
 gi|257803927|gb|EEV32749.1| transcription antiterminator NusG [Enterococcus gallinarum EG2]
          Length = 180

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   ++  R    G+   +  + +P E     + G+K     + F
Sbjct: 5   EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKKKEIVHKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   EI  I+  +  + +   
Sbjct: 65  PGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVE 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  E+GE V + +G F+   G V  +DEEK ++ V + +FGR T  EL + QV+KI
Sbjct: 125 LEV--EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180


>gi|213693145|ref|YP_002323731.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524606|gb|ACJ53353.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320459325|dbj|BAJ69946.1| putative transcription antiterminator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 297

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291

Query: 172 QVEKI 176
           QV+K+
Sbjct: 292 QVQKL 296


>gi|297170819|gb|ADI21839.1| transcription antiterminator [uncultured gamma proteobacterium
           HF0130_25M15]
          Length = 177

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++QV+SN E K   ++  R+  +GL   +T++ +P E VV ++ G K  +ER+F
Sbjct: 1   MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSEITDVVVPIEEVVELKGGEKKTTERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FPGYVLI+  M D+ +H +K  P V+GF+G   E P+P+TD+E  +I+N+VE +   P  
Sbjct: 61  FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              F+ GE V V DGPF  F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK
Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176


>gi|229821642|ref|YP_002883168.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333]
 gi|229567555|gb|ACQ81406.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333]
          Length = 259

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 10/182 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  EK+   ++  R     ++  + ++ +P E VV ++  ++    R   PGY
Sbjct: 78  WYVVHSYAGYEKRVKANLESRTQSLNMEEYIFQVEVPEEDVVEIKNAQRKVVRRVRIPGY 137

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------AV 114
           VL++  +TD+ +  ++ TP V GF+G    P P+T SE+  ++               A 
Sbjct: 138 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTTSEVVSMLAPTLEAKAPATKPGAAP 197

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                 V F VGE V V+DGPF +    +  +  E  ++ V V IFGR TPVEL++NQV 
Sbjct: 198 AAAPIEVEFTVGESVTVTDGPFDTLPATISEIAPESQKLKVLVSIFGRETPVELSFNQVA 257

Query: 175 KI 176
           KI
Sbjct: 258 KI 259


>gi|325267345|ref|ZP_08134006.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Kingella denitrificans ATCC 33394]
 gi|324981140|gb|EGC16791.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Kingella denitrificans ATCC 33394]
          Length = 183

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 121/181 (66%), Gaps = 6/181 (3%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ RWY+VQ YS  EK   +++  R++R G++    +I +P E VV ++ GR+  SER+F
Sbjct: 1   MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEEYFGQILVPVEEVVDIKNGRRTVSERKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQV-----EAAV 114
           FPGYVL++  M D  +H +K  PKV GF+G     P P+T  E++ +M QV     +  +
Sbjct: 61  FPGYVLVEMEMMDSSWHLVKSIPKVNGFVGGTVHRPLPITQKEVDAMMAQVGGSSQDGVM 120

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           ++P   V F++G++V +++GPFA FNG+V++V+ EK+++ V V IFGR TPVEL + QVE
Sbjct: 121 KKPKPRVEFDIGQQVRINEGPFADFNGVVEHVEYEKNKLRVMVQIFGRETPVELEFGQVE 180

Query: 175 K 175
           K
Sbjct: 181 K 181


>gi|183601875|ref|ZP_02963244.1| probable transcription antitermination protein [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682789|ref|YP_002469172.1| transcription termination/antitermination factor NusG
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190365|ref|YP_002967759.1| transcription antiterminator [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195771|ref|YP_002969326.1| transcription antiterminator [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218760|gb|EDT89402.1| probable transcription antitermination protein [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620439|gb|ACL28596.1| transcription termination/antitermination factor NusG
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248757|gb|ACS45697.1| Transcription antiterminator [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250325|gb|ACS47264.1| Transcription antiterminator [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178088|gb|ADC85334.1| NusG [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793352|gb|ADG32887.1| Transcription antiterminator [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 330

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R+   GL+  + ++ +P E V    +  K    R   PG
Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 203

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G    P+P++  E+  +M  + A+          
Sbjct: 204 YVLIRMYPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASHALKEAGDKP 263

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V ++VG++V V+DGPF S + +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 264 AAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGFD 323

Query: 172 QVEKI 176
           QV+++
Sbjct: 324 QVQRL 328


>gi|189440484|ref|YP_001955565.1| transcription antiterminator [Bifidobacterium longum DJO10A]
 gi|227547016|ref|ZP_03977065.1| transcription antiterminator [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133805|ref|YP_004001144.1| nusg [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689997|ref|YP_004209731.1| transcription antiterminator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189428919|gb|ACD99067.1| Transcription antiterminator [Bifidobacterium longum DJO10A]
 gi|227212548|gb|EEI80437.1| transcription antiterminator [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773091|gb|ADQ02579.1| NusG [Bifidobacterium longum subsp. longum BBMN68]
 gi|320461333|dbj|BAJ71953.1| putative transcription antiterminator [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 297

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291

Query: 172 QVEKI 176
           QV+K+
Sbjct: 292 QVQKL 296


>gi|296454931|ref|YP_003662075.1| NusG antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184363|gb|ADH01245.1| NusG antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 297

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291

Query: 172 QVEKI 176
           QV+K+
Sbjct: 292 QVQKL 296


>gi|158319530|ref|YP_001512037.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs]
 gi|158139729|gb|ABW18041.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs]
          Length = 172

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K   +I   +   G++ ++ E+ +P+E  + ++ G+K   E + FPG
Sbjct: 6   RWYVMHTYSGHENKVKMNIEKMVENRGMEDIILEVKVPTEEKIEIKNGKKKVKESKLFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K  MTD+ ++ +++T  V GF+G    P P+TD EI+ +       V+ P   +  
Sbjct: 66  YVLVKMFMTDESWYLVRNTRGVTGFVGPSSKPIPLTDQEIKSM------GVEEPRIEIDV 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +VGE + V  GPF +F G + +++ EK  + V + +FGR TPVEL ++Q+EKI
Sbjct: 120 KVGESIKVISGPFETFIGTIDHINLEKQTLKVRISMFGRETPVELEFDQIEKI 172


>gi|297567070|ref|YP_003686042.1| NusG antitermination factor [Meiothermus silvanus DSM 9946]
 gi|296851519|gb|ADH64534.1| NusG antitermination factor [Meiothermus silvanus DSM 9946]
          Length = 185

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V  Y   E K   ++  R++   + +L+ ++ IP+E VV  R G +K    R+
Sbjct: 1   MSIEWYAVHTYVGYEDKVKANLEKRVAALNMGNLIYQVLIPTEEVVEHRDGGKKDVVRRK 60

Query: 60  FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VE 111
            FPGYV ++  M D        +  +++TP V GF+GT   P P+T  E++HI+    + 
Sbjct: 61  LFPGYVFVQMDMGDDPAEVNEAWEAVRNTPGVTGFVGTATRPVPLTPDEVQHILEVSGLA 120

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              + P   V F+ G+ V V  GPFA F G+V  V+ E+ +V V V IFGR TPVEL + 
Sbjct: 121 GKKEAPKPQVSFKEGDVVRVVSGPFADFTGVVGEVNLERQKVKVLVSIFGRETPVELDFA 180

Query: 172 QV 173
           QV
Sbjct: 181 QV 182


>gi|193214885|ref|YP_001996084.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110]
 gi|193088362|gb|ACF13637.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110]
          Length = 203

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 106/173 (61%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY V+ YS  E+K  E +  ++  +G+   + ++ IP ER V V+ G+K +  +  FPG
Sbjct: 29  RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI+AV+  +  + + D P VIGFLG G+ P+P+   E++ ++   +   ++ V+   F
Sbjct: 89  YVLIEAVLDKQTRYLVLDAPSVIGFLGVGDEPTPLRPDEVKRLLEPEQEIERKMVTKAPF 148

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG  V + DGPF S  G+++ V+ EK +V V +  FGR TP E+ ++QV+ +
Sbjct: 149 EVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVKLV 201


>gi|300362324|ref|ZP_07058500.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri JV-V03]
 gi|300353315|gb|EFJ69187.1| transcription termination/antitermination factor NusG
           [Lactobacillus gasseri JV-V03]
          Length = 183

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 5/176 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E+K  + +  R    G+ + +  + +P E+     +G+K   + + F
Sbjct: 6   EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+   G G  PSP+ D EIE I+       +   
Sbjct: 66  PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKE-- 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               +EVGE V + DG F+  +G +  ++ EK +++V + +FGR T  EL YNQV+
Sbjct: 124 QKADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179


>gi|94987376|ref|YP_595309.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00]
 gi|94731625|emb|CAJ54988.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00]
          Length = 194

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
           RWYIV  YS  E++   +I   +     + L+ E+ +P+ERVV + + G K  + R+F+P
Sbjct: 21  RWYIVHTYSGFEQRVEATIKEMMRSGQDEGLIHEVVLPTERVVELGKGGLKRTTTRKFYP 80

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY++++  MTD  +H I+  PKV GF+G    P+P+ D E   I++ +E   ++P     
Sbjct: 81  GYIMLRMTMTDYSWHLIQTIPKVTGFVGGKNRPAPMKDEEASKILSLMETRQEQPRPKFS 140

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE G+ + V DGPF  FNGIV++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 141 FERGDEIRVIDGPFGGFNGIVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 193


>gi|239620885|ref|ZP_04663916.1| transcription antitermination protein nusG [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239516146|gb|EEQ56013.1| transcription antitermination protein nusG [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 293

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 108 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 167

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 168 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 227

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 228 AAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 287

Query: 172 QVEKI 176
           QV+K+
Sbjct: 288 QVQKL 292


>gi|319950479|ref|ZP_08024392.1| transcription antitermination protein NusG [Dietzia cinnamea P4]
 gi|319435838|gb|EFV91045.1| transcription antitermination protein NusG [Dietzia cinnamea P4]
          Length = 328

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 16/188 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++  Y+  E K   ++  R    G +  + ++ +P E    V+ G+K  + R+  PGY
Sbjct: 140 WFVIHSYAGYENKVKANLETRAVTLGAEDKIFQVEVPVEEFTEVKNGQKKVANRKVLPGY 199

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
           VL++  + D+ +  +++TP V GF+    G    P+P++ S++   +             
Sbjct: 200 VLVRMELDDESWGVVRNTPGVTGFVSATGGAAGKPTPLSLSDVAKFLAPKPEKKSAAAGT 259

Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                       V F+VGE V V DGPFA+    +  VD    ++ V V IFGR TPVEL
Sbjct: 260 ADDQGFAPQAVEVEFQVGESVTVMDGPFATLPASISEVDPAAQKLKVLVSIFGRETPVEL 319

Query: 169 AYNQVEKI 176
            + QVEKI
Sbjct: 320 GFTQVEKI 327


>gi|303327278|ref|ZP_07357720.1| transcription termination/antitermination factor NusG
           [Desulfovibrio sp. 3_1_syn3]
 gi|302863266|gb|EFL86198.1| transcription termination/antitermination factor NusG
           [Desulfovibrio sp. 3_1_syn3]
          Length = 190

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
           PRWYIV  YS  E++  ++I           L+ E+ +P+E+V+ + + G K  + R+F+
Sbjct: 16  PRWYIVHTYSGFEQRVQKTINEMSRTGQDQGLIQEVVVPTEKVIELAKGGEKRTTTRKFY 75

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+++ +MTD  +H ++  PKV GF+G    P+P+ DSE E I+  +E   + P    
Sbjct: 76  PGYVMVRMIMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILALMETRQETPRPKF 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+ G+ V V DGPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 136 NFDRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 189


>gi|291457099|ref|ZP_06596489.1| transcription termination/antitermination factor NusG
           [Bifidobacterium breve DSM 20213]
 gi|291380934|gb|EFE88452.1| transcription termination/antitermination factor NusG
           [Bifidobacterium breve DSM 20213]
          Length = 275

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 90  KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 149

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 150 YVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKP 209

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 210 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 269

Query: 172 QVEKI 176
           QV+K+
Sbjct: 270 QVQKL 274


>gi|88856010|ref|ZP_01130672.1| transcription antitermination factor [marine actinobacterium
           PHSC20C1]
 gi|88814877|gb|EAR24737.1| transcription antitermination factor [marine actinobacterium
           PHSC20C1]
          Length = 315

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 16/189 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y+  EK+   +I  R     ++  V ++ +P E VV ++ G++    R   PG
Sbjct: 127 KWYVIHSYAGFEKRVKHNIENRKVSMAMEDYVFQVEVPMEDVVEIKNGQRKLVNRVRIPG 186

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
           YVL++  + +  +  ++ TP V GF+G   NP P+   E  +++  +   V+ P +    
Sbjct: 187 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPVPLRFEEAFNMLKSLVEIVEAPATKGSS 246

Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        + FE+GE + + +G FA   G +  +  E  ++ V V +F R TPVE
Sbjct: 247 AKGKTAARSIPAEIDFEIGETITIKEGSFAGLPGSISEIKAESGKLIVLVSLFERETPVE 306

Query: 168 LAYNQVEKI 176
           L+++QV K+
Sbjct: 307 LSFDQVTKL 315


>gi|325510553|gb|ADZ22189.1| transcription antitermination protein NusG [Clostridium
           acetobutylicum EA 2018]
          Length = 178

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I   +    L +L+ +I +P +  V  + G+K  + ++ FP 
Sbjct: 11  KWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFPS 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIK VMTD+ ++ +++T    GF+G G  P P+TD E++ +  +        V+S+  
Sbjct: 71  YVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSMGIR------EKVASIDI 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP      +++ ++ EK ++   V +FGR TPVEL +NQ+EK+
Sbjct: 125 VVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 177


>gi|242278647|ref|YP_002990776.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638]
 gi|242121541|gb|ACS79237.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638]
          Length = 186

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 111/172 (64%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV  YS  E++  +++   +     + L+ E+ +P+E+VV + KG K  S R+F+PG
Sbjct: 14  RWYIVHTYSGFEQRVEQTVREMMRTGQDNGLIEEVVVPTEKVVELVKGEKRTSTRKFYPG 73

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV+IK +M D+ +H I+  P+V GF+G    P+P+ DSE   I++ +E   ++P     F
Sbjct: 74  YVMIKMIMEDESWHLIQSIPRVTGFIGGKNRPTPMRDSEAAKILSLMEDRQEQPRPKFNF 133

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + G+ V V DGPF+ FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 134 DRGDEVRVIDGPFSGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 185


>gi|300769745|ref|ZP_07079627.1| transcription termination/antitermination factor NusG
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492653|gb|EFK27839.1| transcription termination/antitermination factor NusG
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  Y+  E K   ++  R+   G++  +  + +P E    V+ G+     ++ F
Sbjct: 6   EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GFLG+   G  P+P+   E E I++Q+  +     
Sbjct: 66  PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSA--RH 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  EVGE+V + DG F+  +G +  +D EK ++ V + +FGR T  EL ++QV++I
Sbjct: 124 TELDVEVGEQVTIIDGAFSGGSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181


>gi|313679512|ref|YP_004057251.1| transcription antitermination protein nusg [Oceanithermus profundus
           DSM 14977]
 gi|313152227|gb|ADR36078.1| transcription antitermination protein nusG [Oceanithermus profundus
           DSM 14977]
          Length = 189

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 13/186 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V  Y   E K  E++  R    G+   + ++ IP+E +V  R+G +K    R+
Sbjct: 1   MSIEWYAVHTYVGYEDKVKENLEKRARALGMQDKIFQVLIPTEEIVEHREGGKKETVYRK 60

Query: 60  FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIMNQ 109
            FPGYV ++  + D        +  +++TP V G +GT E     P P+T  E++ I+  
Sbjct: 61  LFPGYVFVQMDLGDNPEDPNEAWEVVRNTPGVTGVVGTSEGGKYRPVPLTPDEVQRILEV 120

Query: 110 --VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
             +    + P   V F+ G+ V V  GPFA F G+V  ++ E+++V V V IFGR TPVE
Sbjct: 121 SGLAGRKESPKPQVTFKEGDVVRVVSGPFADFTGVVSEINPERNKVKVLVSIFGRETPVE 180

Query: 168 LAYNQV 173
           L ++QV
Sbjct: 181 LDFSQV 186


>gi|254456595|ref|ZP_05070024.1| transcription termination/antitermination factor NusG [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083597|gb|EDZ61023.1| transcription termination/antitermination factor NusG [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 176

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 119/174 (68%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYIVQ +S+ E K    I     ++ +     EI +P+  V  V++G++V  ++++FP
Sbjct: 2   KNWYIVQSHSSFENKVAGLIKEEADKAKIGEKFEEIIVPTHDVTEVKRGKRVQRKKKYFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLIK+ M + +YH IK+  +V GFLG+   P PV+D EIE I+ Q++  V +P S + 
Sbjct: 62  GYVLIKSEMDNNIYHMIKNIKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIE 121

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + VGE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK+
Sbjct: 122 YSVGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKV 175


>gi|304385479|ref|ZP_07367824.1| transcription termination/antitermination factor NusG [Pediococcus
           acidilactici DSM 20284]
 gi|304328686|gb|EFL95907.1| transcription termination/antitermination factor NusG [Pediococcus
           acidilactici DSM 20284]
          Length = 202

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  R    G++  +  + +P E  +  + G++   ++  F
Sbjct: 26  EKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEF 85

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E++ ++ ++        
Sbjct: 86  PGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTA--RH 143

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  EVGE V + DG F    G +  +D    ++ V + +FGR T  EL  +Q++KI
Sbjct: 144 ADINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 201


>gi|29831452|ref|NP_826086.1| transcription antitermination protein [Streptomyces avermitilis
           MA-4680]
 gi|29608567|dbj|BAC72621.1| putative transcription antitermination protein [Streptomyces
           avermitilis MA-4680]
          Length = 287

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E V  ++ G +    +   PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219

Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           +     +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 280 SFDQIQK 286


>gi|270160341|ref|ZP_06188994.1| transcription termination/antitermination factor NusG [Legionella
           longbeachae D-4968]
 gi|289163818|ref|YP_003453956.1| transcription antitermination protein NusG [Legionella longbeachae
           NSW150]
 gi|269987153|gb|EEZ93411.1| transcription termination/antitermination factor NusG [Legionella
           longbeachae D-4968]
 gi|288856991|emb|CBJ10805.1| transcription antitermination protein NusG [Legionella longbeachae
           NSW150]
          Length = 181

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V  YS  E   +  I  R     L+  + E+ +PSE VV +R G+K  S R+FF
Sbjct: 6   SKQWYVVHAYSGYENFVMREIISRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL+  VM D+ +H I+  P+V+GF+G   + P+P+TD E   IM +VE  V +P   
Sbjct: 66  PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE GE V V +GPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 126 ILFEPGEVVRVKEGPFVDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 180


>gi|239943560|ref|ZP_04695497.1| putative transcription antitermination factor NusG [Streptomyces
           roseosporus NRRL 15998]
 gi|239990013|ref|ZP_04710677.1| putative transcription antitermination factor NusG [Streptomyces
           roseosporus NRRL 11379]
          Length = 299

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 232 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 291

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 292 SFDQIQK 298


>gi|744230|prf||2014256A nusG gene
          Length = 294

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 287 SFDQIQK 293


>gi|320449272|ref|YP_004201368.1| transcription termination/antitermination factor NusG [Thermus
           scotoductus SA-01]
 gi|320149441|gb|ADW20819.1| transcription termination/antitermination factor NusG [Thermus
           scotoductus SA-01]
          Length = 184

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY V  Y   E+KA  ++  R+   G++  + ++ IP+E VV +R+G K    ++ 
Sbjct: 1   MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVELREGGKKEVVKKK 60

Query: 61  -FPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112
            FPGY+ ++  + D+      +  ++ TP + GF+G G  P P++  E+ HI+    +  
Sbjct: 61  LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             + P + V F  G++V V  GPFA F G V  ++ EK +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180

Query: 173 VEK 175
           V K
Sbjct: 181 VVK 183


>gi|257454929|ref|ZP_05620177.1| transcription termination/antitermination factor NusG
           [Enhydrobacter aerosaccus SK60]
 gi|257447639|gb|EEV22634.1| transcription termination/antitermination factor NusG
           [Enhydrobacter aerosaccus SK60]
          Length = 176

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIVQ +S  EK+   S+  R++RS       ++ +P+E V+ +R G+K  SER+FFP
Sbjct: 1   MRWYIVQAFSGFEKQVQRSLIERINRSEYKESFGQVLVPTEEVIEMRDGKKRKSERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  M D  +H +KD P+V+GF+G   ENP+P+T  E + I+N++     +P    
Sbjct: 61  GYVLIEMDMNDNTWHLVKDCPRVMGFIGGTPENPAPITPKEADTILNRLNTNENKPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V DGPF  F G+V+ VD EKSR+ + V +F R TPVEL + QVEKI
Sbjct: 121 LFEPGEEVLVIDGPFTEFRGLVEKVDYEKSRLQLTVNVFNRPTPVELEFKQVEKI 175


>gi|157803322|ref|YP_001491871.1| transcription antitermination protein NusG [Rickettsia canadensis
           str. McKiel]
 gi|157784585|gb|ABV73086.1| transcription antitermination protein NusG [Rickettsia canadensis
           str. McKiel]
          Length = 192

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 110/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+ P V GFLG+   P  +T+ EI++I N +EA  +   +S  
Sbjct: 78  SYLLIKMNMTDKSWHFVKNIPGVTGFLGSKTMPKALTEGEIQNIFNNLEAEAKEAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL ++QV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVSIFGKATPIELNFSQVKK 190


>gi|187776563|ref|ZP_02993036.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC
           15579]
 gi|187775222|gb|EDU39024.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC
           15579]
          Length = 174

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L H + +I +P E  V V+ G+K  + ++ FPG
Sbjct: 7   KWYVVHTYSGYENKVKVNLQKTVDNRDLHHWILDIQVPMEEQVEVKDGKKKITLKKTFPG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +MTD  ++ +++T  V GF+G G  P P+T+ E+      +   ++     V  
Sbjct: 67  YVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LSMGIKEKQPEVDV 120

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVGE V V  GP   F   ++ ++ EK ++   V +FGR TPVEL +NQ+EK+
Sbjct: 121 EVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173


>gi|254383188|ref|ZP_04998542.1| transcription antitermination protein nusG [Streptomyces sp. Mg1]
 gi|194342087|gb|EDX23053.1| transcription antitermination protein nusG [Streptomyces sp. Mg1]
          Length = 303

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 175

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 235

Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                V+R +  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 236 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 295

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 296 SFDQIQK 302


>gi|325570755|ref|ZP_08146481.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
 gi|325156601|gb|EGC68781.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
          Length = 197

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   ++  R    G+   +  + +P E     + G+      + F
Sbjct: 22  EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTF 81

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GF+G+   G  P+P+   EI  I+  +  + +   
Sbjct: 82  PGYVLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVE 141

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V  E+GE V + +G F+   G V  +DEEK ++ V + +FGR T  EL + QV+KI
Sbjct: 142 LEV--EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 197


>gi|326333421|ref|ZP_08199666.1| transcription termination/antitermination factor NusG
           [Nocardioidaceae bacterium Broad-1]
 gi|325948782|gb|EGD40877.1| transcription termination/antitermination factor NusG
           [Nocardioidaceae bacterium Broad-1]
          Length = 270

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 22/194 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++  YS  E +   ++  R+    ++  + EI +P+E V  ++ G++   +R   PGY
Sbjct: 77  WFVIHTYSGMENRVKSNLENRIVSLNMEDYIHEIVVPTEEVPEIKNGQRKMVKRTVLPGY 136

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +TD+ +  ++ TP V GF+G    P P++ +E+E+++     A           
Sbjct: 137 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMTEVENMLAPAVVAQAEAEAAAAGE 196

Query: 114 -----------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                       ++PV  V F  G+ V V DGPFA+ +  +  ++ E  RV   V IFGR
Sbjct: 197 AATASSGATGTAKKPVEVVDFAEGDSVTVVDGPFATLHATITELNAESQRVKALVEIFGR 256

Query: 163 VTPVELAYNQVEKI 176
            TPVEL++NQ+EK+
Sbjct: 257 ETPVELSFNQIEKV 270


>gi|220904896|ref|YP_002480208.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869195|gb|ACL49530.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 190

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62
           RWYIV  YS  E++  ++I           L+ E+ +P+E+V+   + G++  S R+F+P
Sbjct: 17  RWYIVHTYSGFEQRVQKTINELRRTGQEQGLIEEVVVPTEKVIEPTKGGQQRTSTRKFYP 76

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV+++ VMTD  +H ++  PKV GF+G    P+P+ D E E I++ +E   + P     
Sbjct: 77  GYVMVRMVMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDGEAERILSLMETRQETPRPKFN 136

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F+ G+ V V +GPF  FNG+V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 137 FDRGDEVRVIEGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFAQVSK 189


>gi|157828050|ref|YP_001494292.1| transcription antitermination protein NusG [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165932747|ref|YP_001649536.1| transcription antitermination protein NusG [Rickettsia rickettsii
           str. Iowa]
 gi|157800531|gb|ABV75784.1| transcription antitermination protein NusG [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165907834|gb|ABY72130.1| transcription antitermination protein [Rickettsia rickettsii str.
           Iowa]
          Length = 192

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 109/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+    E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEGIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190


>gi|182436668|ref|YP_001824387.1| putative transcription antitermination factor NusG [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777290|ref|ZP_08236555.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1]
 gi|548396|sp|P36260|NUSG_STRGR RecName: Full=Transcription antitermination protein nusG
 gi|603589|emb|CAA51296.1| NusG [Streptomyces griseus]
 gi|178465184|dbj|BAG19704.1| putative transcription antitermination factor NusG [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326657623|gb|EGE42469.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1]
          Length = 294

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 287 SFDQIQK 293


>gi|116333236|ref|YP_794763.1| transcription antiterminator [Lactobacillus brevis ATCC 367]
 gi|116098583|gb|ABJ63732.1| transcription antitermination protein nusG [Lactobacillus brevis
           ATCC 367]
          Length = 182

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  Y+  E K + ++  R    G+   +  + +P E    V+ G+   +  + F
Sbjct: 6   EKQWYVLHTYAGYENKVMANLESRAESMGMQDNIFRVVVPEEEEHEVKNGKDKVTMGKTF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VM+D+ ++ +++TP V GFLG+   G  P+P+   E+E I+ +V   +    
Sbjct: 66  PGYVLVEMVMSDQSWYIVRNTPGVTGFLGSHGQGSKPTPLLPDEVERILRRVG--ISARH 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + +    G+ V + DG F+   G +  VD EK ++ V + +FGR T  EL ++QV+ IV
Sbjct: 124 AELDVAPGDSVTIVDGAFSGLVGKITEVDNEKMKLKVNIDMFGRETSTELNFDQVDPIV 182


>gi|24216124|ref|NP_713605.1| transcription antiterminator [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45656642|ref|YP_000728.1| transcription antitermination protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|24197367|gb|AAN50623.1| transcription antiterminator [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599878|gb|AAS69365.1| transcription antitermination protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 181

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 3/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q YS  E K  ++I   + +  L+  + ++ IP+  V  ++ G+K  ++R+  
Sbjct: 3   TKKWYALQTYSGHENKVQKNIEKLIQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPV 118
           PGYVLI+  M D     I+  P V  F+G+ +        E    +          +   
Sbjct: 63  PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             + F+VG+ + + DGPFA+F G+V  +  +K R+ V+V IFGR TPVEL Y QV+
Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178


>gi|294792777|ref|ZP_06757924.1| transcription termination/antitermination factor NusG [Veillonella
           sp. 6_1_27]
 gi|294794531|ref|ZP_06759667.1| transcription termination/antitermination factor NusG [Veillonella
           sp. 3_1_44]
 gi|294454861|gb|EFG23234.1| transcription termination/antitermination factor NusG [Veillonella
           sp. 3_1_44]
 gi|294456676|gb|EFG25039.1| transcription termination/antitermination factor NusG [Veillonella
           sp. 6_1_27]
          Length = 178

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K   ++  ++   GL  +++ I +P E  +  + G K   +R+ FP
Sbjct: 5   KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  + D+ ++ +++TP V GF+G+   P P++DSE+EHI+ + +   ++P  +V 
Sbjct: 65  GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            EVGE V ++ G F    G++  ++ +K  + + V +F R T VEL ++QVEK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPDKGTLKLSVEMFNRDTEVELEFSQVEK 176


>gi|34112954|gb|AAQ62399.1| predicted transcription antiterminator NusG [uncultured marine
           gamma proteobacterium EBAC31A08]
 gi|37912939|gb|AAR05271.1| predicted transcription antiterminator NusG [uncultured marine
           gamma proteobacterium EB000-45B06]
 gi|40063166|gb|AAR38003.1| transcription antitermination protein NusG [uncultured marine
           bacterium 562]
          Length = 175

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 110/174 (63%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++Q YS  E+K   ++  ++  +GL     EI IP+E++V ++ G K  +ER+FFP
Sbjct: 1   MDWYVIQAYSGYEQKVKIALEEKIELNGLSEKFGEILIPTEQIVELKGGTKKTTERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GY+LI+ ++ D  +  ++ TP+V GF+G   + P P+++ ++  I+N++E     P    
Sbjct: 61  GYILIEMLLEDDSWQLVQSTPRVSGFVGGTKDRPLPISEDDVNSIINRIEVGEDAPAPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E GE V V DGPF  FNG+V+NVD E++ V V V I GR TPV+L + Q+EK
Sbjct: 121 IYEPGEVVRVCDGPFNDFNGVVENVDYERNMVKVAVQILGRATPVDLEFIQIEK 174


>gi|319957698|ref|YP_004168961.1| transcription antitermination protein nusg [Nitratifractor
           salsuginis DSM 16511]
 gi|319420102|gb|ADV47212.1| transcription antitermination protein nusG [Nitratifractor
           salsuginis DSM 16511]
          Length = 176

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E+    +I   +   GL   + ++ +P+E V+ V+ G+K  +ER  
Sbjct: 1   MAHQWYAIQTYAGSERSVKRAIEQMVEDYGLQDRIDKVVVPTEEVIEVKNGQKKITERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + GYV     +   ++H I+  P+V  F+G  + P+P+ +S+I+ I+ ++    + P   
Sbjct: 61  YSGYVFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTPLNESDIKLILEKM-ENKKPPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V FE GE V + DGPFA+F G+V+  D +  ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 VDFEPGEMVRIIDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEIDYTQVEKII 176


>gi|282860792|ref|ZP_06269858.1| NusG antitermination factor [Streptomyces sp. ACTE]
 gi|282564528|gb|EFB70064.1| NusG antitermination factor [Streptomyces sp. ACTE]
          Length = 297

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 110 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 169

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 229

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 230 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 290 SFDQIQK 296


>gi|291541516|emb|CBL14626.1| transcription antitermination protein nusG [Ruminococcus bromii
           L2-63]
          Length = 175

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+V  YS  E K    +        L  ++ ++ +P E V      +    E + F
Sbjct: 5   EARWYVVHTYSGYENKVATDLMTTAENRNLQDMIIDVKVPVEIVTETVGDKTKEVENKLF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV +K V TD+ ++ +++     GF+G G  P P+TD+E+  +       V+     +
Sbjct: 65  PGYVFVKMVYTDETWYVVRNIRGCTGFVGPGSKPVPLTDAEVYRM------GVETRSVKL 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + VG+ V + DGP   F G+V+ +D +K  V V V +FGR TPVEL   Q E I
Sbjct: 119 NYSVGDSVRIIDGPLEDFVGVVEEIDADKDYVRVVVSMFGRETPVELELAQAEPI 173


>gi|15892099|ref|NP_359813.1| transcription antitermination protein NusG [Rickettsia conorii str.
           Malish 7]
 gi|32129825|sp|Q92J91|NUSG_RICCN RecName: Full=Transcription antitermination protein nusG
 gi|15619223|gb|AAL02714.1| transcription antitermination protein NusG [Rickettsia conorii str.
           Malish 7]
          Length = 192

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 111/173 (64%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  + H   +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDMLRKIAKQNMTHFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190


>gi|320009119|gb|ADW03969.1| NusG antitermination factor [Streptomyces flavogriseus ATCC 33331]
          Length = 288

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 160

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 220

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 221 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 281 SFDQIQK 287


>gi|269793111|ref|YP_003318015.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100746|gb|ACZ19733.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 181

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 100/175 (57%), Gaps = 1/175 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIVQ YS  E K   ++  R++  G++  +  + +P E  V V++GR     R+ FP 
Sbjct: 7   RWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122
           YVL++ +M D+ ++ ++ TP V GF+G+G +P P+TD E+  +M ++      +P   + 
Sbjct: 67  YVLVEMIMDDQSWYVVRHTPGVTGFVGSGNHPIPLTDREVAEVMGKIGLPADRKPKVELD 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            EVG+ V V  GPF    G V  VD +K RV   V +FGR T  E  +  +EK++
Sbjct: 127 IEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKVL 181


>gi|270291194|ref|ZP_06197417.1| transcription termination/antitermination factor NusG [Pediococcus
           acidilactici 7_4]
 gi|270280590|gb|EFA26425.1| transcription termination/antitermination factor NusG [Pediococcus
           acidilactici 7_4]
          Length = 181

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  R    G++  +  + +P E  +  + G++   ++  F
Sbjct: 5   EKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E++ ++ ++        
Sbjct: 65  PGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTA--RH 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  EVGE V + DG F    G +  +D    ++ V + +FGR T  EL  +Q++KI
Sbjct: 123 ADINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 180


>gi|253681448|ref|ZP_04862245.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum D str. 1873]
 gi|253561160|gb|EES90612.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum D str. 1873]
          Length = 173

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +   GL  L+ +I +P E VV V+ G+K  ++++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVAQKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P+T+ E+      +   +      +  
Sbjct: 66  YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKTIDIDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP  SF  I++ ++ EK ++   V +FGR TP EL +NQ+EKI
Sbjct: 120 SVGESVKVISGPLKSFVAIIQEINVEKQKIKALVNMFGRETPTELNFNQIEKI 172


>gi|133872295|gb|ABO40215.1| transcription antitermination component [Candidatus Liberibacter
           americanus]
          Length = 177

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 126/177 (71%), Positives = 148/177 (83%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RW+I+QVYSNCEK AV+SI  R +R+GL + + EI +PSE+VV VRKGRKV+SERRF
Sbjct: 1   MVSRWFIIQVYSNCEKSAVKSICERSNRTGLRNFLEEIIVPSEKVVVVRKGRKVDSERRF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL KAVM D+VYH IK  PKVIGFLG+  NPSPV+D EI  IM QVEA+   PVSS
Sbjct: 61  FPGYVLAKAVMNDEVYHAIKSAPKVIGFLGSDNNPSPVSDEEINRIMGQVEASEYGPVSS 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FE+GE+V VSDGPFASFNGIVK+VDE+KSR+ VEV+IFGR TPVEL+YNQVEKIV
Sbjct: 121 IMFEIGEQVYVSDGPFASFNGIVKDVDEDKSRLKVEVLIFGRATPVELSYNQVEKIV 177


>gi|256830550|ref|YP_003159278.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028]
 gi|256579726|gb|ACU90862.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028]
          Length = 180

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/172 (42%), Positives = 107/172 (62%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYI+  YS  E++  ++I   +       LV E+ +P+E+VV + KG+K  S R+F+PG
Sbjct: 8   RWYIIHTYSGFEQRVEQTIKEMIRTGQAKGLVEEVIVPTEKVVELIKGQKRTSTRKFYPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y ++K V TD  +H I+  PKV GF+G    P P+TD E + I+  +E   ++P     F
Sbjct: 68  YAMVKMVFTDDSWHMIQSIPKVTGFIGGKSRPVPLTDKEAQRILATIETRKEQPRPKFHF 127

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V V DGPFA+FN  V++V+ +K ++ V V IFGR TPVEL + QV K
Sbjct: 128 ERGDDVRVIDGPFANFNATVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 179


>gi|229917372|ref|YP_002886018.1| NusG antitermination factor [Exiguobacterium sp. AT1b]
 gi|229468801|gb|ACQ70573.1| NusG antitermination factor [Exiguobacterium sp. AT1b]
          Length = 183

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 10/184 (5%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-----KGRKVN 55
           M  +W++VQ YS  E    E++  R+    ++  +  + +P+E           + +   
Sbjct: 1   MEKQWFVVQTYSGFENNVKENLERRIGSMNMEDKIFRVLVPTETTQEEVTLKSGEKKIKE 60

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEA 112
            E + FPGYV ++ VMTD  ++ +++TP V GF    G G  P P+   E+ ++++Q+  
Sbjct: 61  REVKSFPGYVFVEMVMTDDSWYVVRNTPNVTGFLGSTGGGAKPIPLQPDEVTNVLSQMGL 120

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             ++      +E+G+ V V +G F +F G +  ++ +K ++ V V +FGR T +EL + Q
Sbjct: 121 IEKKDRY--NYELGDLVRVKEGAFENFEGTIDEIEADKEKLKVVVDMFGRETKIELDFEQ 178

Query: 173 VEKI 176
           V+KI
Sbjct: 179 VQKI 182


>gi|119714942|ref|YP_921907.1| transcription termination/antitermination factor NusG [Nocardioides
           sp. JS614]
 gi|119535603|gb|ABL80220.1| transcription antitermination protein nusG [Nocardioides sp. JS614]
          Length = 317

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 19/191 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W++V  YS  E +   ++  R+    ++  + EI +P+E V  ++ G++    R   PGY
Sbjct: 127 WFVVHTYSGMENRVKSNLENRIISLNMEDYIHEIVVPTEEVAEIKNGQRKMVRRTVLPGY 186

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  +TD+ +  ++ TP V GF+G    P P++ SE+E+++                 
Sbjct: 187 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMSEVENMLAPAVVARAEAEAVAAGA 246

Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                 AA ++PV    F+V + V V DGPFA+ +  +  ++ E  RV   V IFGR TP
Sbjct: 247 PASSGGAAAKKPVEVADFDVSDSVMVVDGPFATLHATITEINAEAQRVKALVEIFGRETP 306

Query: 166 VELAYNQVEKI 176
           VEL+++Q++++
Sbjct: 307 VELSFSQIQRV 317


>gi|294142945|ref|YP_003558923.1| transcription antitermination protein NusG [Shewanella violacea
           DSS12]
 gi|293329414|dbj|BAJ04145.1| transcription antitermination protein NusG [Shewanella violacea
           DSS12]
          Length = 185

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E + ++++   +    ++H   EI +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVLKTLNEYIQMYKMEHYFGEILVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P+++ E + I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISNVEADRILQRLQENTESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            FE GE V V+DGPFA F G V+ VD EK+RV V V+IFGR TP+E+ ++Q+
Sbjct: 129 MFEPGEVVSVADGPFADFRGAVEQVDYEKNRVKVSVMIFGRSTPLEVDFSQI 180


>gi|254517457|ref|ZP_05129513.1| transcription antitermination protein NusG [Clostridium sp.
           7_2_43FAA]
 gi|226911206|gb|EEH96407.1| transcription antitermination protein NusG [Clostridium sp.
           7_2_43FAA]
          Length = 173

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L  L+ +I +P E VV  + G++  S ++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKANLEKTIENRNLQSLLQDIQVPMEEVVEEKDGKQKISLKKKFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +MTD+ ++ +++T  V GF+G    P P+TD E+E +       VQ     +  
Sbjct: 66  YVLVKMLMTDESWYVVRNTRGVTGFVGPASKPVPLTDEEVESM------GVQEAPVEIDL 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           EVGE V V  GP   F  I++ ++ EK ++   + +FGR T  EL + QVEK+V
Sbjct: 120 EVGESVRVISGPLREFVAIIQEINLEKRKIKALIDMFGRETLAELEFTQVEKLV 173


>gi|212702089|ref|ZP_03310217.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098]
 gi|212674494|gb|EEB34977.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098]
          Length = 191

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 106/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS--VRKGRKVNSERRFF 61
           RWYIV  YS  E++  ++I   +     + L+ E+ +P+E+V+       +   S R+F+
Sbjct: 17  RWYIVHTYSGFEQRVQKTIKAMMDSGEDNGLIQEVVVPTEKVIEPSKNGSQPRTSTRKFY 76

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I+ +MTD   H ++  PKV GF+G    P+P+++S+   I++ +E+  + P    
Sbjct: 77  PGYVMIRMIMTDLSCHLVQSIPKVTGFVGGKNRPTPMSESDAARILSLMESRQETPRPKF 136

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE G+ V V +GPF  FNG+V +V+ EK ++ V V IFGR TPVEL + QV K
Sbjct: 137 NFERGDDVRVIEGPFEGFNGVVDDVNYEKGKLRVSVSIFGRQTPVELDFVQVSK 190


>gi|46200039|ref|YP_005706.1| transcription factor [Thermus thermophilus HB27]
 gi|55980217|ref|YP_143514.1| transcription antitermination protein NusG [Thermus thermophilus
           HB8]
 gi|548398|sp|P35872|NUSG_THET8 RecName: Full=Transcription antitermination protein nusG
 gi|348515|pir||A45281 transcription factor NusG - Thermus aquaticus
 gi|46197667|gb|AAS82079.1| transcription factor [Thermus thermophilus HB27]
 gi|55771630|dbj|BAD70071.1| transcription antitermination protein NusG [Thermus thermophilus
           HB8]
          Length = 184

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V      E+KA  ++  R+   GL   + ++ IP+E VV +R+G +K    ++
Sbjct: 1   MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 60

Query: 60  FFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112
            FPGY+ I+  + D+      +  ++ TP + GF+G G  P P++  E+ HI+    +  
Sbjct: 61  LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 120

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             + P + V F  G++V V  GPFA F G V  ++ E+ +V V V IFGR TPVEL ++Q
Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 180

Query: 173 VEK 175
           V K
Sbjct: 181 VVK 183


>gi|269798566|ref|YP_003312466.1| NusG antitermination factor [Veillonella parvula DSM 2008]
 gi|282849078|ref|ZP_06258466.1| transcription termination/antitermination factor NusG [Veillonella
           parvula ATCC 17745]
 gi|269095195|gb|ACZ25186.1| NusG antitermination factor [Veillonella parvula DSM 2008]
 gi|282581196|gb|EFB86591.1| transcription termination/antitermination factor NusG [Veillonella
           parvula ATCC 17745]
          Length = 178

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K   ++  ++   GL  +++ I +P E  +  + G K   +R+ FP
Sbjct: 5   KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  + D+ ++ +++TP V GF+G+   P P++DSE+EHI+ + +   ++P  +V 
Sbjct: 65  GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            EVGE V ++ G F    G++  ++ EK  + + V +F R T VEL ++QVEK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEK 176


>gi|153952848|ref|YP_001393613.1| transcription antitermination protein NusG [Clostridium kluyveri
           DSM 555]
 gi|219853513|ref|YP_002470635.1| hypothetical protein CKR_0170 [Clostridium kluyveri NBRC 12016]
 gi|146345729|gb|EDK32265.1| NusG [Clostridium kluyveri DSM 555]
 gi|219567237|dbj|BAH05221.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 173

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    L   + ++ +P E  V ++ G+K  + ++ FPG
Sbjct: 6   KWYVVHTYSGYENKVKMNLEKTIENRELYDCIDDVQVPMEEQVEIKDGKKKITLKKIFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+  +MTD  ++ +++T  V GF+G G  P P+TD E++ +       +   + +V  
Sbjct: 66  YVLVHMIMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDEEVKDM------GINEKLVNVDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP  +F  +++ ++ EK +V   V +FGR TPVEL +NQ+EKI
Sbjct: 120 LVGENVKVRSGPLENFLAVIQEINIEKRKVKALVNMFGRETPVELDFNQIEKI 172


>gi|229586374|ref|YP_002844875.1| transcription antitermination protein NusG [Rickettsia africae
           ESF-5]
 gi|228021424|gb|ACP53132.1| Transcription antitermination protein NusG [Rickettsia africae
           ESF-5]
          Length = 192

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 110/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDMLRKIAKQNMTGFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190


>gi|295692220|ref|YP_003600830.1| transcription antitermination protein nusg [Lactobacillus crispatus
           ST1]
 gi|295030326|emb|CBL49805.1| Transcription antitermination protein nusG [Lactobacillus crispatus
           ST1]
          Length = 185

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D E+  ++       ++PV+
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPVA 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +    +GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|284106472|ref|ZP_06386258.1| transcription antitermination protein NusG [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283830068|gb|EFC34339.1| transcription antitermination protein NusG [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 179

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 3/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  Y+  E +   S+  R ++ GL+    ++ +P+E V+ ++ G++  S+R+F
Sbjct: 1   MAKNWYVIHTYAGYEGRVRTSLVERATQMGLEEEFGQVLVPTEDVIEIKDGKRRASKRKF 60

Query: 61  FPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++    + D+    IK+TPKV GF+G     P P+   E + ++ Q+E+ V  P
Sbjct: 61  FPGYVLVELEDPLRDETVVMIKETPKVTGFVGGEGVKPMPLPKEEADSLLKQIESGVSLP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              VFF  G+ V + DGPF  FNG++  VD+E SR  V V I GR TPVEL + Q+E+
Sbjct: 121 RERVFFSKGDNVRIVDGPFMGFNGLIDEVDDEHSRAKVLVSILGRATPVELVFAQIER 178


>gi|256844505|ref|ZP_05549991.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus 125-2-CHN]
 gi|256849107|ref|ZP_05554540.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US]
 gi|262047587|ref|ZP_06020542.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus MV-3A-US]
 gi|256613583|gb|EEU18786.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus 125-2-CHN]
 gi|256713883|gb|EEU28871.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US]
 gi|260572163|gb|EEX28728.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus MV-3A-US]
          Length = 185

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D E+  ++       ++PV 
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V F++GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 126 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|291286300|ref|YP_003503116.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809]
 gi|290883460|gb|ADD67160.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809]
          Length = 174

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V  YS  EK+ V  +  ++    L   + ++ IP+E V+ ++KG+K  S+++ 
Sbjct: 1   MAKQWYVVHTYSGFEKRVVTLLEEKVKNEKLADQIDDVLIPTEDVIELKKGKKKVSKKKT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+L+   M+   +H +K  PKV GF+G     +PV   E +       A  + P  +
Sbjct: 61  FPGYILVHMEMSTTNWHVVKSIPKVTGFVGG---INPVPIPEHDVKAMIDLAKSESPRIA 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +  G+ V V DGPF  F G V  V+ +K +V V V IFGR TPVEL Y QV+++
Sbjct: 118 SKYVEGDTVEVIDGPFLGFTGTVDEVNPDKEKVRVIVSIFGRQTPVELDYLQVKRV 173


>gi|311029034|ref|ZP_07707124.1| transcription antitermination protein NusG [Bacillus sp. m3-13]
          Length = 177

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 109/179 (60%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    ++ G+K  ++++ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVTKKKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+ D EI  I+ ++    ++ 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLDDEIAFILKRMGMMEKQV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V F++ E V V++GPFA+F G +  +D++K +V V V +FGR TPVEL + Q+EK+
Sbjct: 121 --EVDFDLKESVKVTEGPFANFTGHIVEMDKDKHKVKVLVNMFGRETPVELDFTQIEKL 177


>gi|239980079|ref|ZP_04702603.1| putative transcription antitermination factor NusG [Streptomyces
           albus J1074]
 gi|291451933|ref|ZP_06591323.1| NusG protein [Streptomyces albus J1074]
 gi|291354882|gb|EFE81784.1| NusG protein [Streptomyces albus J1074]
          Length = 287

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219

Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           +     +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 280 SFDQIQK 286


>gi|54296353|ref|YP_122722.1| transcription antitermination protein NusG [Legionella pneumophila
           str. Paris]
 gi|148361065|ref|YP_001252272.1| transcription antitermination protein NusG [Legionella pneumophila
           str. Corby]
 gi|296105866|ref|YP_003617566.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99
           Alcoy]
 gi|53750138|emb|CAH11530.1| transcription antitermination protein NusG [Legionella pneumophila
           str. Paris]
 gi|148282838|gb|ABQ56926.1| transcription antitermination protein NusG [Legionella pneumophila
           str. Corby]
 gi|295647767|gb|ADG23614.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99
           Alcoy]
          Length = 182

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E   +  I  R     L+  + E+ +PSE VV +R G+K  S R+FF
Sbjct: 7   AKQWYVVHAYSGYENFVMREITSRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL+  VM D+ +H ++  P+V+GF+G   + P+P++D E + IM +VE  V +P   
Sbjct: 67  PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE GE + V +GPF  FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181


>gi|291447027|ref|ZP_06586417.1| transcription antitermination protein nusG [Streptomyces
           roseosporus NRRL 15998]
 gi|291349974|gb|EFE76878.1| transcription antitermination protein nusG [Streptomyces
           roseosporus NRRL 15998]
          Length = 294

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 287 SFDQIQK 293


>gi|325956072|ref|YP_004286682.1| transcription termination/antitermination factor NusG
           [Lactobacillus acidophilus 30SC]
 gi|325332637|gb|ADZ06545.1| transcription termination/antitermination factor NusG
           [Lactobacillus acidophilus 30SC]
          Length = 185

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E+E ++       + P +
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTA 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +    +GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|150015031|ref|YP_001307285.1| transcription antitermination protein NusG [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901496|gb|ABR32329.1| NusG antitermination factor [Clostridium beijerinckii NCIMB 8052]
          Length = 181

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L+ L+ +I +P E VV  + G++  S ++ FPG
Sbjct: 14  RWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKFPG 73

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M D+ ++ +++T  V GF+G G  P P++D E+E +       V      +  
Sbjct: 74  YVLVKMLMGDEAWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM------GVLEVPVEIDL 127

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           EVGE + +  GP       ++ +  +K +V   V +FGR T  EL +NQVEK+V
Sbjct: 128 EVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEKLV 181


>gi|154486659|ref|ZP_02028066.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis
           L2-32]
 gi|154084522|gb|EDN83567.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis
           L2-32]
          Length = 274

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 89  KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVRVPG 148

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+ +  +     +++T  V GF+G  ++P+P+T  E+  +M  + A+          
Sbjct: 149 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDKP 208

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V +  G++V V+DGPF +   +V  VD    ++ V V IFGR TPVEL +N
Sbjct: 209 AAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGFN 268

Query: 172 QVEKI 176
           QVEK+
Sbjct: 269 QVEKL 273


>gi|296130513|ref|YP_003637763.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109]
 gi|296022328|gb|ADG75564.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109]
          Length = 255

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + ++ +P E VV ++  ++   +R   PGY
Sbjct: 74  WYVIHSYAGYENRVKANLESRTQSLNMEDYIHQVEVPMEEVVEIKNAQRKVVKRVRIPGY 133

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
           VL++  +TD+ +  ++ TP V GF+G    P P+T  E+  ++                 
Sbjct: 134 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPAIETKAPAQQAAKAS 193

Query: 117 -PVSSVFFEVGERVCVSD-GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                V F VGE V V+D GPF +    +  ++ E  ++ V V +FGR TPVEL+++QV 
Sbjct: 194 SKPVEVDFTVGESVTVTDGGPFDTLPATISEINPENQKLKVLVSLFGRETPVELSFSQVS 253

Query: 175 KI 176
           KI
Sbjct: 254 KI 255


>gi|307609126|emb|CBW98571.1| transcription antitermination protein NusG [Legionella pneumophila
           130b]
          Length = 182

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E   +  I  R     L   + E+ +PSE VV +R G+K  S R+FF
Sbjct: 7   AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL+  VM D+ +H ++  P+V+GF+G   + P+P++D E + IM +VE  V +P   
Sbjct: 67  PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE GE + V +GPF  FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181


>gi|297159567|gb|ADI09279.1| transcription antitermination protein nusG [Streptomyces
           bingchenggensis BCW-1]
          Length = 297

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 110 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRRTVRQNKLPGY 169

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEEAG 229

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 230 LPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 290 SFDQIQK 296


>gi|51473334|ref|YP_067091.1| transcription antitermination protein NusG [Rickettsia typhi str.
           Wilmington]
 gi|81692319|sp|Q68XN3|NUSG_RICTY RecName: Full=Transcription antitermination protein nusG
 gi|51459646|gb|AAU03609.1| transcription antitermination protein NusG (N utilization substance
           protein G) [Rickettsia typhi str. Wilmington]
          Length = 192

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 110/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E I  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+E++R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEVVTVTDGPFETFMGTVEEIDKERNRLKVSVSIFGKATPIELNFNQVKK 190


>gi|293381063|ref|ZP_06627084.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus 214-1]
 gi|312977941|ref|ZP_07789687.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus CTV-05]
 gi|290922363|gb|EFD99344.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus 214-1]
 gi|310895248|gb|EFQ44316.1| transcription termination/antitermination factor NusG
           [Lactobacillus crispatus CTV-05]
          Length = 185

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D E+  ++       ++PV 
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V F++GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 126 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|34580870|ref|ZP_00142350.1| transcription antitermination protein NusG [Rickettsia sibirica
           246]
 gi|28262255|gb|EAA25759.1| transcription antitermination protein NusG [Rickettsia sibirica
           246]
          Length = 192

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 110/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGVEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKDVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190


>gi|327182886|gb|AEA31333.1| transcription termination/antitermination factor NusG
           [Lactobacillus amylovorus GRL 1118]
          Length = 185

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E+E ++       + P +
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTA 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +    +GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|311063697|ref|YP_003970422.1| transcription antitermination protein NusG [Bifidobacterium bifidum
           PRL2010]
 gi|310866016|gb|ADP35385.1| NusG Transcription antitermination protein [Bifidobacterium bifidum
           PRL2010]
          Length = 280

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  GL+  + +I +P E V       K    R   PG
Sbjct: 95  KWYVLHTYSGYEKRVKTNVESRVTSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRIPG 154

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  ++  + A+          
Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V + VG++V V DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274

Query: 172 QVEKI 176
           QVEK+
Sbjct: 275 QVEKL 279


>gi|217030|dbj|BAA01261.1| virginiae butanolide receptor [Streptomyces virginiae]
          Length = 319

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 132 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 191

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 192 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 251

Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                V+R +  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 252 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 311

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 312 SFDQIQK 318


>gi|116327511|ref|YP_797231.1| transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331876|ref|YP_801594.1| transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120255|gb|ABJ78298.1| Transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125565|gb|ABJ76836.1| Transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 181

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 3/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q YS  E K  ++I   + +  L+  + ++ IP+  V  ++ G+K  ++R+  
Sbjct: 3   TKKWYALQTYSGHENKVQKNIEKLVQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPV 118
           PGYVLI+  M D     I+  P V  F+G+ +        E    +          +   
Sbjct: 63  PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             + F+VG+ + + DGPFA+F G+V  +  +K R+ V+V IFGR TPVEL Y QV+
Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178


>gi|183221359|ref|YP_001839355.1| transcription antitermination protein NusG [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911452|ref|YP_001963007.1| transcription antiterminator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776128|gb|ABZ94429.1| Transcription antiterminator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779781|gb|ABZ98079.1| Transcription antitermination protein NusG [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 184

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 3/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++Q YS  E K   +I   + +  L+  +  + IPS  V  ++ G+K  ++++  P
Sbjct: 7   KKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVTKKKLMP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ---VEAAVQRPVS 119
           GYVL++  MTD +   I++ P V  F+G           +    +        + +    
Sbjct: 67  GYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVESEEVSRP 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              F+VGE + + DGPFA+F G+V  +  +K R+ V V IFGR TPVEL Y QV+
Sbjct: 127 RFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQVK 181


>gi|54293309|ref|YP_125724.1| transcription antitermination protein NusG [Legionella pneumophila
           str. Lens]
 gi|53753141|emb|CAH14588.1| transcription antitermination protein NusG [Legionella pneumophila
           str. Lens]
          Length = 182

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E   +  I  R     L   + E+ +PSE VV +R G+K  S R+FF
Sbjct: 7   AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL+  VM D+ +H ++  P+V+GF+G   + P+P++D E + IM +VE  V +P   
Sbjct: 67  PGYVLVHMVMDDQTWHMVRAIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE GE + V +GPF  FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181


>gi|291437861|ref|ZP_06577251.1| transcription antitermination protein nusG [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340756|gb|EFE67712.1| transcription antitermination protein nusG [Streptomyces ghanaensis
           ATCC 14672]
          Length = 294

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +   ++   PGY
Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 227 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 286

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 287 SFDQIQK 293


>gi|302559020|ref|ZP_07311362.1| transcription termination/antitermination factor NusG [Streptomyces
           griseoflavus Tu4000]
 gi|302476638|gb|EFL39731.1| transcription termination/antitermination factor NusG [Streptomyces
           griseoflavus Tu4000]
          Length = 285

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +   ++   PGY
Sbjct: 98  WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 157

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 158 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 217

Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           +     +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 218 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 277

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 278 SFDQIQK 284


>gi|168187827|ref|ZP_02622462.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum C str. Eklund]
 gi|169294323|gb|EDS76456.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum C str. Eklund]
          Length = 173

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +   GL  L+ +I +P E VV V+ G+K  ++++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P+T+ E+  +       +      +  
Sbjct: 66  YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVSAM------GISEKNVDIDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP  SF  +++ ++ EK ++   V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINIEKQKIKALVNMFGRETPTELNFNQIEKL 172


>gi|167627264|ref|YP_001677764.1| transcription antitermination protein NusG [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241667819|ref|ZP_04755397.1| transcription antitermination protein NusG [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876363|ref|ZP_05249073.1| transcription antitermination protein nusG [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|167597265|gb|ABZ87263.1| transcription antitermination protein NusG [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254842384|gb|EET20798.1| transcription antitermination protein nusG [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 177

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 2/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQV+S  EK+    +   +  +GL      I +P+E VV ++ G+K  SER++FPGY
Sbjct: 3   WYVVQVHSGYEKRVKTQLEENIEIAGLKENFGRILVPTENVVEMKGGQKRKSERKYFPGY 62

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--QRPVSSVF 122
           VLI+A +T + +  IK  P+V+  +G+   P P++ +E+E I+  VE +     P     
Sbjct: 63  VLIEANLTTEAWDIIKAVPRVLTVVGSRGKPIPLSKAEVERILGFVEGSTSTVEPRLRKT 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + VGE V V +GPF  F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175


>gi|118443261|ref|YP_877185.1| transcription antitermination protein NusG [Clostridium novyi NT]
 gi|118133717|gb|ABK60761.1| transcription termination/antitermination factor NusG [Clostridium
           novyi NT]
          Length = 173

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +   GL  L+ +I +P E VV V+ G+K  ++++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P+T+ E+      +   +      +  
Sbjct: 66  YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKNVDIDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP  SF  +++ ++ EK ++   V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172


>gi|303228911|ref|ZP_07315722.1| transcription termination/antitermination factor NusG [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303231237|ref|ZP_07317975.1| transcription termination/antitermination factor NusG [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514144|gb|EFL56148.1| transcription termination/antitermination factor NusG [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516437|gb|EFL58368.1| transcription termination/antitermination factor NusG [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 178

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K   ++  ++   GL  +++ I +P E  +  + G K   +R+ FP
Sbjct: 5   KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  + D+ ++ +++TP V GF+G+   P P++DSE+EHI+ + +   ++P  +V 
Sbjct: 65  GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            EVGE V ++ G F    G++  ++ EK  + + V +F R T VE+ ++QVEK
Sbjct: 124 VEVGETVRITSGAFEDRLGVITEINPEKGTLKLNVEMFNRDTEVEVEFSQVEK 176


>gi|326382994|ref|ZP_08204683.1| transcription antitermination protein NusG [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198130|gb|EGD55315.1| transcription antitermination protein NusG [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 249

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G+     R+  PGY
Sbjct: 57  WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 116

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119
           +L++  + D+ +  +++TP V GF+G    PSP++  E+   +       +   +     
Sbjct: 117 ILVRMELNDESWSAVRNTPGVTGFVGMTSRPSPLSIKEVLQFLMPRAEVRKAEAAKAAAA 176

Query: 120 ----------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
                            V FEVGE V V DGPFA+    +  V+ E+ +V V V IFGR 
Sbjct: 177 AGESVEAAAAAASNLVEVDFEVGESVTVMDGPFATLPASISEVNTEQRKVKVLVSIFGRE 236

Query: 164 TPVELAYNQVEKI 176
           TPVEL +NQVEK+
Sbjct: 237 TPVELGFNQVEKL 249


>gi|58336696|ref|YP_193281.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM]
 gi|227903259|ref|ZP_04021064.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC
           4796]
 gi|58254013|gb|AAV42250.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM]
 gi|227869064|gb|EEJ76485.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC
           4796]
          Length = 185

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D E+  ++       + P  
Sbjct: 67  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLDEEVSRLLKNQGQPAKTPTE 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              F++GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K
Sbjct: 127 --DFDIGETVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK 180


>gi|328958748|ref|YP_004376134.1| transcription antitermination protein NusG [Carnobacterium sp.
           17-4]
 gi|328675072|gb|AEB31118.1| transcription antitermination protein NusG [Carnobacterium sp.
           17-4]
          Length = 182

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K  ++I  R +  G+   +  + IP E    V+ G++  + ++ F
Sbjct: 7   AKQWYVLHTYSGYENKVKQNIESRANSMGMGDYIFRVVIPEEEEKEVKNGKEKINMKKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +M+D  ++ +++TP V GF+G+   G  P+P+ +SEIE I+ ++  +     
Sbjct: 67  PGYVLVEMIMSDDSWYVVRNTPGVTGFVGSHGAGSKPAPLLNSEIEVILRRIGMSA--RH 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + FEVGE V + +G F+   G +  ++ EK+++ V V +FGR T  EL + Q +K+
Sbjct: 125 QEINFEVGETVTIIEGAFSGLTGKITEIEMEKAKLKVNVEMFGRETSTELDFEQADKL 182


>gi|52840562|ref|YP_094361.1| transcription antitermination protein NusG [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52627673|gb|AAU26414.1| transcription antitermination protein NusG [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 184

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E   +  I  R     L   + E+ +PSE VV +R G+K  S R+FF
Sbjct: 9   AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL+  VM D+ +H ++  P+V+GF+G   + P+P++D E + IM +VE  V +P   
Sbjct: 69  PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 128

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + FE GE + V +GPF  FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 129 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 183


>gi|332042977|gb|EGI79175.1| transcription termination/antitermination factor NusG [Lacinutrix
           algicola 5H-3-7-4]
          Length = 184

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 111/179 (62%), Gaps = 4/179 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K    I   ++R GL   V ++ +P+E VV +R G+K+N E+ +F
Sbjct: 6   EKKWYVVRAVSGQENKIKTYIENEIARLGLQDYVEQVLVPTENVVQIRNGKKINKEKVYF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            GY++IKA +T +V H IK    VIGFLG   G +P P+  SE+  ++ +V+       +
Sbjct: 66  SGYIMIKANLTGEVPHIIKGITNVIGFLGATKGGDPLPLRQSEVNRMLGKVDELTVEADT 125

Query: 120 S--VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  + +  GE V V DGPF  F+G ++N++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 126 NVAIPYTKGETVKVIDGPFNGFDGTIENINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184


>gi|318056665|ref|ZP_07975388.1| transcription antitermination protein [Streptomyces sp. SA3_actG]
 gi|318079221|ref|ZP_07986553.1| transcription antitermination protein [Streptomyces sp. SA3_actF]
          Length = 303

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 116 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 175

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 235

Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 296 SFDQIQK 302


>gi|310286801|ref|YP_003938059.1| transcription antitermination factor NusG [Bifidobacterium bifidum
           S17]
 gi|309250737|gb|ADO52485.1| transcription antitermination factor NusG [Bifidobacterium bifidum
           S17]
          Length = 280

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R+   GL+  + +I +P E V       K    R   PG
Sbjct: 95  KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRVPG 154

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  ++  + A+          
Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V + VG++V V DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274

Query: 172 QVEKI 176
           QVEK+
Sbjct: 275 QVEKL 279


>gi|119025264|ref|YP_909109.1| transcription antitermination protein nusG [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764848|dbj|BAF39027.1| transcription antitermination protein nusG [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 274

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  G++  + ++ +P E V    +  K    R   PG
Sbjct: 89  KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVRVPG 148

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+ +  +     +++T  V GF+G  ++P+P+T  E+  +M  + A+          
Sbjct: 149 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDKP 208

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V +  G++V V+DGPF +   +V  VD    ++ V V IFGR TPVEL +N
Sbjct: 209 AAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGFN 268

Query: 172 QVEKI 176
           QVEK+
Sbjct: 269 QVEKL 273


>gi|227363500|ref|ZP_03847620.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3]
 gi|227545179|ref|ZP_03975228.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A]
 gi|300909144|ref|ZP_07126605.1| transcription termination/antitermination factor NusG
           [Lactobacillus reuteri SD2112]
 gi|325681893|ref|ZP_08161411.1| transcription antitermination protein NusG [Lactobacillus reuteri
           MM4-1A]
 gi|227071437|gb|EEI09740.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3]
 gi|227184825|gb|EEI64896.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A]
 gi|300893009|gb|EFK86368.1| transcription termination/antitermination factor NusG
           [Lactobacillus reuteri SD2112]
 gi|324978537|gb|EGC15486.1| transcription antitermination protein NusG [Lactobacillus reuteri
           MM4-1A]
          Length = 186

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E +   ++  R    G++  +  + +P E V  V+ G+   +  + F
Sbjct: 11  EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTF 70

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++  ++TP V GFL   G G  P+P+   E++ IM ++    +  V
Sbjct: 71  PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMG--TETTV 128

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           S +  + G+ V V  G FA+    V  VD EK ++   V +FGR T  EL ++Q+
Sbjct: 129 SDIDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQI 183


>gi|297243309|ref|ZP_06927243.1| transcription antitermination protein [Gardnerella vaginalis AMD]
 gi|296888716|gb|EFH27454.1| transcription antitermination protein [Gardnerella vaginalis AMD]
          Length = 300

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 12/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R+   GL+  + +I +P E V    +  K    R   PG
Sbjct: 115 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 174

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           YVLI+    +     +++T  V GF+G    P+P++  E+  +M  + A+          
Sbjct: 175 YVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDKP 234

Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               +    V ++VG++V V+DGPF++   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 235 AAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGFN 294

Query: 172 QVEKIV 177
           QVE IV
Sbjct: 295 QVEPIV 300


>gi|296112479|ref|YP_003626417.1| transcription termination/antitermination protein NusG [Moraxella
           catarrhalis RH4]
 gi|295920173|gb|ADG60524.1| transcription termination/antitermination protein NusG [Moraxella
           catarrhalis RH4]
 gi|326561519|gb|EGE11862.1| transcription antitermination protein [Moraxella catarrhalis 7169]
 gi|326564354|gb|EGE14583.1| transcription antitermination protein [Moraxella catarrhalis
           46P47B1]
 gi|326567989|gb|EGE18081.1| transcription antitermination protein [Moraxella catarrhalis BC7]
 gi|326570709|gb|EGE20743.1| transcription antitermination protein [Moraxella catarrhalis BC1]
 gi|326571264|gb|EGE21287.1| transcription antitermination protein [Moraxella catarrhalis BC8]
 gi|326573054|gb|EGE23027.1| transcription antitermination protein [Moraxella catarrhalis CO72]
          Length = 176

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+Q +S  E +   S+  R+ RS       E+ +P+E VV +R+G+K   +++ FP
Sbjct: 1   MRWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKCTMQQKLFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI   M +  +H ++  P + GF+G   ENP+P+T  E + I+N++      P    
Sbjct: 61  GYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V DGPF  F G+VK VD +KS++H+ V +F R T VEL +N+VEKI
Sbjct: 121 MFEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175


>gi|148543544|ref|YP_001270914.1| transcription antitermination protein nusG [Lactobacillus reuteri
           DSM 20016]
 gi|184152951|ref|YP_001841292.1| transcription antitermination protein NusG [Lactobacillus reuteri
           JCM 1112]
 gi|194468089|ref|ZP_03074075.1| NusG antitermination factor [Lactobacillus reuteri 100-23]
 gi|148530578|gb|ABQ82577.1| transcription antitermination protein nusG [Lactobacillus reuteri
           DSM 20016]
 gi|183224295|dbj|BAG24812.1| transcription antitermination protein NusG [Lactobacillus reuteri
           JCM 1112]
 gi|194452942|gb|EDX41840.1| NusG antitermination factor [Lactobacillus reuteri 100-23]
          Length = 180

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E +   ++  R    G++  +  + +P E V  V+ G+   +  + F
Sbjct: 5   EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++  ++TP V GFL   G G  P+P+   E++ IM ++    +  V
Sbjct: 65  PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMG--TETTV 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           S +  + G+ V V  G FA+    V  VD EK ++   V +FGR T  EL ++Q+
Sbjct: 123 SDIDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQI 177


>gi|309389945|gb|ADO77825.1| transcription antitermination protein nusG [Halanaerobium
           praevalens DSM 2228]
          Length = 189

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 109/171 (63%), Gaps = 2/171 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS+ E+K   ++  R++ +G++  +  I +P+E+ +  +KG+    ++R FPGY
Sbjct: 20  WYVVHTYSSHERKVKANLEKRIASTGMEDSIFRILVPTEKKIEKKKGKDEVVKKRIFPGY 79

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +L++  M DK ++ +K+TP VIGF+  G  P PV   E++ I++ +    ++   SV FE
Sbjct: 80  ILLQMKMNDKSWYVVKNTPGVIGFVSGGTKPLPVAKEEVDAILSSMGEKAKKV--SVDFE 137

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +G++V V  GPF  F+G++K +  E+ +  + V +FGR TPVEL ++Q EK
Sbjct: 138 IGDQVTVKHGPFEDFDGVIKEIHPEQGKAKILVSMFGRETPVELEFDQFEK 188


>gi|331268400|ref|YP_004394892.1| NusG antitermination factor [Clostridium botulinum BKT015925]
 gi|329124950|gb|AEB74895.1| NusG antitermination factor [Clostridium botulinum BKT015925]
          Length = 173

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +   GL  L+ +I +P E VV V++G+K  ++++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKEGKKKVTQKKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P+T+ E+      +   +      +  
Sbjct: 66  YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKTIDIDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VGE V V  GP  SF  +++ ++ EK ++   V +FGR TP EL +NQ+EK+
Sbjct: 120 SVGESVKVISGPLKSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172


>gi|297201705|ref|ZP_06919102.1| transcription termination/antitermination factor NusG [Streptomyces
           sviceus ATCC 29083]
 gi|197710922|gb|EDY54956.1| transcription termination/antitermination factor NusG [Streptomyces
           sviceus ATCC 29083]
          Length = 287

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E V  ++ G +    +   PGY
Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 280 SFDQIQK 286


>gi|298346273|ref|YP_003718960.1| transcription antitermination protein [Mobiluncus curtisii ATCC
           43063]
 gi|304389961|ref|ZP_07371918.1| transcription termination/antitermination factor NusG [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315657212|ref|ZP_07910096.1| transcription termination/antitermination factor NusG [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|298236334|gb|ADI67466.1| transcription antitermination protein [Mobiluncus curtisii ATCC
           43063]
 gi|304326854|gb|EFL94095.1| transcription termination/antitermination factor NusG [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315492315|gb|EFU81922.1| transcription termination/antitermination factor NusG [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 271

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY+V  YS+ EK+  ++I  R++ + G++  V ++ IP E  V V+   +   +R   P
Sbjct: 80  RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKVVQRPRIP 139

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
           GYVL++  M +  +  +KDTP V GF+G  ++P P+T +E+ +++        +      
Sbjct: 140 GYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVEDG 199

Query: 122 ----------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                            FEVG+ V ++ GPF + +  +  V+ E  ++ V V IF R TP
Sbjct: 200 QVEISQATQRTAPVAADFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERETP 259

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 260 VELNFNQVTKI 270


>gi|157964201|ref|YP_001499025.1| transcription antitermination protein NusG [Rickettsia massiliae
           MTU5]
 gi|157843977|gb|ABV84478.1| Transcription antitermination protein NusG [Rickettsia massiliae
           MTU5]
          Length = 193

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 110/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E +  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 19  KQWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+   V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 79  SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 138

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K
Sbjct: 139 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 191


>gi|483836|dbj|BAA04281.1| NusG [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 294

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPV++
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVDV 286

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 287 SFDQIQK 293


>gi|302553509|ref|ZP_07305851.1| transcription termination/antitermination factor NusG [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471127|gb|EFL34220.1| transcription termination/antitermination factor NusG [Streptomyces
           viridochromogenes DSM 40736]
          Length = 298

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N ++   PGY
Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNIKQNKLPGY 170

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 231 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 290

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 291 SFDQIQK 297


>gi|254495698|ref|ZP_05108615.1| transcription antitermination protein NusG [Legionella drancourtii
           LLAP12]
 gi|254355077|gb|EET13695.1| transcription antitermination protein NusG [Legionella drancourtii
           LLAP12]
          Length = 181

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V  YS  E   +  I  R     L   + E+ +PSE VV +R G+K  S R+FF
Sbjct: 6   SKQWYVVHAYSGYENFVMREITSRAVHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL+  VM D+ +H I+  P+V+GF+G   + P+P+TD E   IM +VE  V +P   
Sbjct: 66  PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V FE GE + V +GPF  FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK
Sbjct: 126 VLFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 180


>gi|305679974|ref|ZP_07402784.1| transcription termination/antitermination factor NusG
           [Corynebacterium matruchotii ATCC 14266]
 gi|305660594|gb|EFM50091.1| transcription termination/antitermination factor NusG
           [Corynebacterium matruchotii ATCC 14266]
          Length = 291

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R+    ++  + E+ +P E+ + +R G++   +R+  PG
Sbjct: 94  QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  + D  +  +++TP V  F+G   N +PV   ++   +                
Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213

Query: 109 ---------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
                     +   + +P   V +EVGE V + +GP AS +  +  +D E S+V V V I
Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273

Query: 160 FGRVTPVELAYNQVEKI 176
           FGR TPV+L ++Q++KI
Sbjct: 274 FGRETPVDLTFDQIKKI 290


>gi|225020307|ref|ZP_03709499.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224947051|gb|EEG28260.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 291

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R+    ++  + E+ +P E+ + +R G++   +R+  PG
Sbjct: 94  QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  + D  +  +++TP V  F+G   N +PV   ++   +                
Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213

Query: 109 ---------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
                     +   + +P   V +EVGE V + +GP AS +  +  +D E S+V V V I
Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273

Query: 160 FGRVTPVELAYNQVEKI 176
           FGR TPV+L ++Q++KI
Sbjct: 274 FGRETPVDLTFDQIKKI 290


>gi|308233405|ref|ZP_07664142.1| transcription termination/antitermination factor NusG [Atopobium
           vaginae DSM 15829]
 gi|328943541|ref|ZP_08241006.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
 gi|327491510|gb|EGF23284.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
          Length = 181

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M   WY++  YS  E K    +  R+   GL+  + +I IP+E VV V+   ++ N E  
Sbjct: 1   MAKHWYVIHTYSGYENKVKSDLEHRIETYGLEDQIVDIKIPTEEVVQVKSDGKRKNVETN 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  + D  +  +++T  V GF+G    P+P+  SE   +M +  A+ ++   
Sbjct: 61  VFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIDGKPAPLRRSEFNKMMRKSNASQEKVTP 120

Query: 120 S---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                 FEVG  V V  GP   F G +  V  E  ++ V + IFGR TPVEL  NQVE
Sbjct: 121 QSITTDFEVGMAVRVIQGPLEKFEGKITEVMVEAGKLKVSLTIFGRETPVELTMNQVE 178


>gi|290958181|ref|YP_003489363.1| transcription antitermination protein [Streptomyces scabiei 87.22]
 gi|260647707|emb|CBG70812.1| transcription antitermination protein [Streptomyces scabiei 87.22]
          Length = 294

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E V  ++ G +    +   PGY
Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 287 SFDQIQK 293


>gi|154500409|ref|ZP_02038447.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC
           29799]
 gi|150270914|gb|EDM98197.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC
           29799]
          Length = 174

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V  YS  E     SI   +    +  L+ E++IP E V  +        ER+ F
Sbjct: 4   SAKWYVVHTYSGYENTVAASIEKAVENRNMHDLIQEVSIPLETVTEITDNGPKTVERKVF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K VMTD+ +H +++     GF+G+G    P++D EI  +       V++    +
Sbjct: 64  PGYVLVKMVMTDETWHLVRNVRGATGFVGSGNKAIPLSDEEIAAL------GVEKREVVI 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + VG+ V ++DG   S+ G V  +D E  +V + V +FGR TPVEL  +QVE +
Sbjct: 118 GYAVGDNVRITDGALKSYLGTVDEIDMEHEKVRIVVSMFGRETPVELDLDQVEPV 172


>gi|152990012|ref|YP_001355734.1| transcription antitermination protein NusG [Nitratiruptor sp.
           SB155-2]
 gi|151421873|dbj|BAF69377.1| transcriptional antitermination factor NusG [Nitratiruptor sp.
           SB155-2]
          Length = 176

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +QVYS  EK   ++I        L   + E+ +P+E V+ V+ G+K  +ER  
Sbjct: 1   MAHKWYAIQVYSGSEKAVKKAIENLAEEENLKDRIKEVVVPTEDVIEVKSGKKKITERSI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV     +   ++  I+  PKV  F+G  + P+P++++++  IM +       P   
Sbjct: 61  YPGYVFANMDLDIDLWQKIQSLPKVSRFIGESKKPTPISEADVRKIMEK-AEKKGAPKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + +E GE V +++GPFA+F G+V+  D E  ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 ISYEPGEMVRITEGPFANFTGVVEEYDMEHGKLKLNVSIFGRSTPVEILYTQVEKII 176


>gi|224282356|ref|ZP_03645678.1| NusG antitermination factor [Bifidobacterium bifidum NCIMB 41171]
 gi|313139500|ref|ZP_07801693.1| transcription antitermination protein nusG [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132010|gb|EFR49627.1| transcription antitermination protein nusG [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 280

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R+   GL+  + +I +P E V       K    R   PG
Sbjct: 95  KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRVPG 154

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    +     +++T  V GF+G  ++P+P++  E+  ++  + A+          
Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V + VG++V V DGPFA+   +V +V+    ++ V V IFGR TPVEL ++
Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274

Query: 172 QVEKI 176
           QVEK+
Sbjct: 275 QVEKL 279


>gi|325844403|ref|ZP_08168130.1| transcription termination/antitermination factor NusG [Turicibacter
           sp. HGF1]
 gi|325489077|gb|EGC91461.1| transcription termination/antitermination factor NusG [Turicibacter
           sp. HGF1]
          Length = 178

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ Y+  E K + ++  R+    +   +  + IP E+ V ++ G +    R+ 
Sbjct: 1   MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQRP 117
           FPGYVL++ + TD  ++ +++TP V GFLG+    +        E+  I+ ++       
Sbjct: 61  FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVMPILKKMGITSVEV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              +  +VG+RV V+ GPF+   G ++++D+E S+V V V +FGR TPVEL +NQ+
Sbjct: 121 SLDI--QVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174


>gi|317133008|ref|YP_004092322.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
 gi|315470987|gb|ADU27591.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
          Length = 173

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 8/176 (4%)

Query: 1   MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
           M+   +WY+V  YS  E K   ++   +    L  ++ EI IP+E V  ++   K   ER
Sbjct: 1   MSENAKWYVVHTYSGYENKVASNLQTIVENRSLQDVIQEIKIPTEMVTEIKDNVKREVER 60

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           + FPGYVL+K  + D  +H +++T  V GF+G+G +P P+T+ E+E +       + +  
Sbjct: 61  KTFPGYVLVKMELNDDTWHIVRNTRGVTGFVGSGSHPEPLTEKEVEAL------GMDKRT 114

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             V + VG+ V + DGP   F G V  +D +K++V V V +FGR TPVEL   QVE
Sbjct: 115 VEVNYAVGDSVRIVDGPLDGFIGTVDTLDTDKNQVTVTVSMFGRETPVELELGQVE 170


>gi|68536954|ref|YP_251659.1| transcription antitermination protein NusG [Corynebacterium
           jeikeium K411]
 gi|68264553|emb|CAI38041.1| transcription antitermination protein [Corynebacterium jeikeium
           K411]
          Length = 316

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 27/199 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R    G+D  + E+ +P E VV +R G++   +R+  PGY
Sbjct: 117 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 176

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           VL++  + D  +  ++DTP V  F+G    P+PV   E+   +                 
Sbjct: 177 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 236

Query: 108 ----------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                                  V +E GE V +  GPFAS +  +  +D E +R+   V
Sbjct: 237 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 296

Query: 158 VIFGRVTPVELAYNQVEKI 176
            IFGR TPVEL ++QVEK+
Sbjct: 297 SIFGRETPVELEFDQVEKL 315


>gi|260579298|ref|ZP_05847181.1| transcription antitermination protein [Corynebacterium jeikeium
           ATCC 43734]
 gi|258602597|gb|EEW15891.1| transcription antitermination protein [Corynebacterium jeikeium
           ATCC 43734]
          Length = 322

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 27/199 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R    G+D  + E+ +P E VV +R G++   +R+  PGY
Sbjct: 123 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 182

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           VL++  + D  +  ++DTP V  F+G    P+PV   E+   +                 
Sbjct: 183 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 242

Query: 108 ----------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                                  V +E GE V +  GPFAS +  +  +D E +R+   V
Sbjct: 243 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 302

Query: 158 VIFGRVTPVELAYNQVEKI 176
            IFGR TPVEL ++QVEK+
Sbjct: 303 SIFGRETPVELEFDQVEKL 321


>gi|311744840|ref|ZP_07718636.1| transcription termination/antitermination factor NusG
           [Aeromicrobium marinum DSM 15272]
 gi|311311957|gb|EFQ81878.1| transcription termination/antitermination factor NusG
           [Aeromicrobium marinum DSM 15272]
          Length = 251

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 16/188 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  EK+   ++  R++    +  + E+ +P+E V  V+ G++   +R   PGY
Sbjct: 64  WYVIHTYSGMEKRVKANLENRITSLNAEDFIFEVVVPTEEVAEVKNGQRKLVKRTVLPGY 123

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--- 121
           VL++  +TD+ +  ++ TP V GF+G    P P++ +E+E ++     A     ++    
Sbjct: 124 VLVRMDLTDESWGVVRHTPSVTGFVGNAHQPVPLSLAEVEQMLAPAVEAEVAATAAAESP 183

Query: 122 -------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                         F  G+ V V DGPFA+ +  +  ++ +  RV   V IFGR TPVEL
Sbjct: 184 DSQPAKTAKVEFADFSAGDSVMVVDGPFATLHATITEINVDSQRVKALVEIFGRETPVEL 243

Query: 169 AYNQVEKI 176
           +++Q++K+
Sbjct: 244 SFSQIQKV 251


>gi|260102419|ref|ZP_05752656.1| transcription antitermination protein NusG [Lactobacillus
           helveticus DSM 20075]
 gi|260083787|gb|EEW67907.1| transcription antitermination protein NusG [Lactobacillus
           helveticus DSM 20075]
 gi|328462980|gb|EGF34788.1| transcription termination/antitermination factor NusG
           [Lactobacillus helveticus MTCC 5463]
          Length = 185

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R+   G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KQWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E++ ++       ++P  
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 127 --NFEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|1709422|sp|P27309|NUSG_STRVG RecName: Full=Transcription antitermination protein nusG; AltName:
           Full=Butanolide receptor
 gi|1217911|dbj|BAA09301.1| NusG like protein [Streptomyces virginiae]
          Length = 299

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 231

Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                V+R +  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 232 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 292 SFDQIQK 298


>gi|294787327|ref|ZP_06752580.1| transcription termination/antitermination factor NusG
           [Parascardovia denticolens F0305]
 gi|315227113|ref|ZP_07868900.1| transcription termination/antitermination factor NusG
           [Parascardovia denticolens DSM 10105]
 gi|294484683|gb|EFG32318.1| transcription termination/antitermination factor NusG
           [Parascardovia denticolens F0305]
 gi|315119563|gb|EFT82696.1| transcription termination/antitermination factor NusG
           [Parascardovia denticolens DSM 10105]
          Length = 305

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 12/185 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  EK+   ++  R+   GL+  V ++ IP E V    +  K    R   PGY
Sbjct: 121 WYVLHTYSGYEKRVKTNVESRVQNFGLEDKVFQVEIPMEEVEKHTEKGKKIITRVRIPGY 180

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------EA 112
           VLI+    D     I++T  V GF+GT     P++  E+  +M  +              
Sbjct: 181 VLIRMWDDDDARRIIRETEGVTGFVGTNREAVPLSRQEVVDMMAPMIRSQALKEAGDQPK 240

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           A ++    V F +GE V V+DGPFA+  G+V ++  E  ++ V V IFGR TPVEL ++Q
Sbjct: 241 AARQRKVEVVFSLGETVTVTDGPFATMTGVVSDLQPEAQKLTVLVNIFGRDTPVELGFSQ 300

Query: 173 VEKIV 177
           VEKI+
Sbjct: 301 VEKII 305


>gi|303232391|ref|ZP_07319083.1| transcription termination/antitermination factor NusG [Atopobium
           vaginae PB189-T1-4]
 gi|302481475|gb|EFL44543.1| transcription termination/antitermination factor NusG [Atopobium
           vaginae PB189-T1-4]
          Length = 181

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M   WY+V  Y+  E K    +  R+   GL+  + +I IP+E VV ++   ++ + E  
Sbjct: 1   MAKHWYVVHTYAGYENKVKNDLQHRIETYGLEDQIVDIQIPTEEVVKIKNDGKRTSVEAN 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL++  + D  +  +++T  V GF+G    P+P+  SE   +M +          
Sbjct: 61  AFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIEGKPTPLRRSEFNKMMRRANPTTPEAPQ 120

Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                 FEVG  V V  GP   F G +  V  +  +V V + IFGR TPVEL  +Q+E I
Sbjct: 121 RTVETEFEVGMTVRVVRGPLEKFEGKITEVMTDAGKVKVSLTIFGRETPVELTMDQIEII 180

Query: 177 V 177
           V
Sbjct: 181 V 181


>gi|293375376|ref|ZP_06621657.1| transcription termination/antitermination factor NusG [Turicibacter
           sanguinis PC909]
 gi|292645929|gb|EFF63958.1| transcription termination/antitermination factor NusG [Turicibacter
           sanguinis PC909]
          Length = 178

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY+VQ Y+  E K + ++  R+    +   +  + IP E+ V ++ G +    R+ 
Sbjct: 1   MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQRP 117
           FPGYVL++ + TD  ++ +++TP V GFLG+    +        E+  I+ ++       
Sbjct: 61  FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVVPILKKMGITSVEV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              +  +VG+RV V+ GPF+   G ++++D+E S+V V V +FGR TPVEL +NQ+
Sbjct: 121 SLDI--QVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174


>gi|227879328|ref|ZP_03997193.1| transcriptional antiterminator NusG [Lactobacillus crispatus
           JV-V01]
 gi|227861072|gb|EEJ68726.1| transcriptional antiterminator NusG [Lactobacillus crispatus
           JV-V01]
          Length = 199

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 21  KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 80

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D E+  ++       ++PV 
Sbjct: 81  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 139

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V F++GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 140 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195


>gi|152973943|ref|YP_001373460.1| transcription antitermination protein NusG [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022695|gb|ABS20465.1| NusG antitermination factor [Bacillus cytotoxicus NVH 391-98]
          Length = 177

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++  ++R+ 
Sbjct: 1   MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119
           FPGYVL++ +MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V 
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177


>gi|302536235|ref|ZP_07288577.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. C]
 gi|302445130|gb|EFL16946.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. C]
          Length = 304

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKQAAEEAG 236

Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                V+R +  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 237 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 296

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 297 SFDQIQK 303


>gi|311896608|dbj|BAJ29016.1| putative transcription antitermination protein [Kitasatospora setae
           KM-6054]
          Length = 315

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +  +++  R     ++  + E  +P E VV ++ G +    +   PGY
Sbjct: 132 WYVIHTYAGYENRVKQNLEQRSVSLNVEDYIFESQVPQEEVVQIKNGDRKTIRQNKLPGY 191

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
           VL++  +T + +  +++TP V GF+G   +P P+T  E+  ++                 
Sbjct: 192 VLVRMDLTPESWGVVRNTPGVTGFVGNAYDPYPLTLDEVVKMLAPDVERAAAKEAGKASP 251

Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL+++Q
Sbjct: 252 VRPVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQ 311

Query: 173 VEK 175
           ++K
Sbjct: 312 IQK 314


>gi|228989305|ref|ZP_04149296.1| Transcription antitermination protein nusG [Bacillus pseudomycoides
           DSM 12442]
 gi|229083416|ref|ZP_04215764.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-44]
 gi|228699849|gb|EEL52486.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-44]
 gi|228770383|gb|EEM18956.1| Transcription antitermination protein nusG [Bacillus pseudomycoides
           DSM 12442]
          Length = 177

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++  ++R+ 
Sbjct: 1   MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119
           FPGYVL++ +MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V 
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+ E V V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 DFDFELHETVRVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177


>gi|291533635|emb|CBL06748.1| transcription antitermination protein nusG [Megamonas hypermegale
           ART12/1]
          Length = 175

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 99/175 (56%), Gaps = 3/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++  ++   G++  +  + +P E+    R G++   ER+ F
Sbjct: 4   EKKWYVIHTYSGYENKVKANLERKIHSMGMEDKIFNVIVPVEKETEKRNGKEKVVERKIF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ ++ ++ ++ +++TP V GF+G+   P P+T+ E   I+  +        + +
Sbjct: 64  PGYVLLEMIVDERSWYIVRNTPGVTGFVGSNTKPVPLTEEEANRILKAMGM---DKPTEL 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             EVG++V ++ G F +F   +  +D  KS++   V +FGR T +E  ++Q+EKI
Sbjct: 121 DVEVGDQVNITSGAFENFVATITEIDYSKSKIKGVVDMFGRETAIEADFDQIEKI 175


>gi|254442748|ref|ZP_05056224.1| transcription termination/antitermination factor NusG
           [Verrucomicrobiae bacterium DG1235]
 gi|198257056|gb|EDY81364.1| transcription termination/antitermination factor NusG
           [Verrucomicrobiae bacterium DG1235]
          Length = 191

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 8/179 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  SN E K    +   +    ++  V E+ +P+E V  V+ G+K    R+F+PGY
Sbjct: 12  WYVIQTLSNQEGKVKRYLDKFIKEDEMEEYVFEVLVPTETVTEVKNGKKTQLVRKFYPGY 71

Query: 65  VLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
             +   + D+        ++ +++T  VI F+G G+ P+P+  SEI+ I++QVEAA  + 
Sbjct: 72  AFVHMRLYDENGKLLNKPWYFVRETAGVINFVG-GDRPTPLKKSEIDTILSQVEAATGKE 130

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V FE+GE V ++DGPF + NG +  +D EK ++ V V IFGR TPVEL Y QVE++
Sbjct: 131 TPKVQFEIGEEVKITDGPFLNLNGRIDEIDPEKGKLKVSVSIFGRFTPVELEYWQVERL 189


>gi|323465883|gb|ADX69570.1| Transcription antitermination protein nusG [Lactobacillus
           helveticus H10]
          Length = 199

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 21  KQWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 80

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ ++ +++TP V GF+   G G  PSP+   E++ ++       ++P  
Sbjct: 81  GYVLVEMVMTDESWYIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 140

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 141 --NFEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195


>gi|326566153|gb|EGE16309.1| transcription antitermination protein [Moraxella catarrhalis
           103P14B1]
 gi|326566163|gb|EGE16318.1| transcription antitermination protein [Moraxella catarrhalis
           12P80B1]
 gi|326577248|gb|EGE27141.1| transcription antitermination protein [Moraxella catarrhalis
           101P30B1]
 gi|326577813|gb|EGE27681.1| transcription antitermination protein [Moraxella catarrhalis O35E]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+Q +S  E +   S+  R+ RS       E+ +P+E VV +R+G+K   +++ FP
Sbjct: 1   MRWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKYTMQQKLFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI   M +  +H ++  P + GF+G   ENP+P+T  E + I+N++      P    
Sbjct: 61  GYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V DGPF  F G+VK VD +KS++H+ V +F R T VEL +N+VEKI
Sbjct: 121 MFEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175


>gi|163787866|ref|ZP_02182313.1| elongation factor Tu [Flavobacteriales bacterium ALC-1]
 gi|159877754|gb|EDP71811.1| elongation factor Tu [Flavobacteriales bacterium ALC-1]
          Length = 181

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 112/179 (62%), Gaps = 4/179 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K    I   +SR GL+  V ++ +P+E+V+ +R G+K+N E+ +F
Sbjct: 3   EKKWYVVRAVSGQENKIKTYIENEISRLGLEDFVDQVLVPTEKVIQIRNGKKINKEKVYF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA--AVQRP 117
           PGY++I+A ++ ++ H IK    VIGFLG   G +P P+  SE+  ++ +V+        
Sbjct: 63  PGYIMIQANLSGEIPHIIKSITNVIGFLGETKGGDPVPLRQSEVNRMLGKVDELAIEADA 122

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             ++ F  GE V V DGPF  F+G ++ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 123 NVAIPFTKGETVKVIDGPFNGFDGTIEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 181


>gi|15604011|ref|NP_220526.1| transcription antitermination protein NusG [Rickettsia prowazekii
           str. Madrid E]
 gi|1709419|sp|P50056|NUSG_RICPR RecName: Full=Transcription antitermination protein nusG
 gi|987968|emb|CAA90886.1| transcription antitermination factor NusG [Rickettsia prowazekii]
 gi|3860702|emb|CAA14603.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (nusG) [Rickettsia
           prowazekii]
 gi|292571729|gb|ADE29644.1| Transcription antitermination protein NusG [Rickettsia prowazekii
           Rp22]
          Length = 192

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 110/173 (63%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V   S  EK+  E I  ++++  +     +I IP   V  V++G+ V  E++  P
Sbjct: 18  KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+LIK  MTDK +H +K+ P V GFLG+   P  +T+SEI++I N +EA  +   +S  
Sbjct: 78  SYILIKMNMTDKSWHLVKNIPGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKL 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +EVGE V V+DGPF +F G V+ +D+ ++R+ V V IFG+ TP+EL +NQV+K
Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEAIDKARNRLKVSVSIFGKATPIELNFNQVKK 190


>gi|149372370|ref|ZP_01891558.1| transcription anti-termination protein [unidentified eubacterium
           SCB49]
 gi|149354760|gb|EDM43323.1| transcription anti-termination protein [unidentified eubacterium
           SCB49]
          Length = 184

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY+V+  S  E K    +   ++R  L   + +I +P+E+V+ VR G+KV  ER FF
Sbjct: 7   TKKWYVVRSVSGQENKIKSYLESEITRLNLADYIEQILVPTEKVIQVRNGKKVQKERVFF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118
           PGY++++A +  ++ H IK    VIGFLG   G +P P+  +E+  ++ +V+  AVQ   
Sbjct: 67  PGYIMVQASLAGEIPHIIKSINGVIGFLGETKGGDPVPLRQAEVNRMLGKVDELAVQDDS 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ + +GE V V DGPF  FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 VNIPYTIGETVKVVDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184


>gi|145220413|ref|YP_001131122.1| transcription antitermination protein nusG [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206577|gb|ABP37620.1| transcription antitermination protein nusG [Chlorobium
           phaeovibrioides DSM 265]
          Length = 191

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 103/173 (59%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY +++YS  E+K  E I   + RSGL   + ++ +P ER + V+ G+K    +  FPG
Sbjct: 17  RWYALRIYSGHERKVKEGIEAEVERSGLGDKILQVYVPYERFIEVKNGKKRAMTKNAFPG 76

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI+AV+  +  + I D P ++GFLG  +NP P+   E+E ++    A  +R V    +
Sbjct: 77  YVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPESAVTERTVVEAPY 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+ V V DGPF+S  G+V  V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 137 NVGDSVKVIDGPFSSLAGVVHEVCPERMKVKVMISFFGRSTPTELDFSQVKSV 189


>gi|325108569|ref|YP_004269637.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305]
 gi|324968837|gb|ADY59615.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305]
          Length = 199

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+++V SN EK   +S+  R+ R  ++    EI IP+E+VV  + G+K   E+R +
Sbjct: 24  EMRWYVLKVQSNREKSIRDSLNRRIKRDHMEDYFGEIIIPTEKVVETKGGKKRVREQRLY 83

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           PGY++I+ ++ D  ++ ++DT  V  F G    P P+ D EI  ++   E+    P    
Sbjct: 84  PGYIMIQMILNDDSWYLVRDTGGVGDFTGAAGKPIPMQDQEIARMLGAEESKQAEPTKVK 143

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +   VG+ V + +G F SF G ++ +DE   ++ V + IFGR TPVEL + QVEKI
Sbjct: 144 IDLAVGDTVKIGEGTFESFEGSIEAIDEASGKISVLIEIFGRPTPVELEHWQVEKI 199


>gi|238018607|ref|ZP_04599033.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748]
 gi|237865078|gb|EEP66368.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748]
          Length = 178

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K   ++  ++   GL  +++ I +P E  +  + G K   +R+ FP
Sbjct: 5   KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  + D+ ++ +++TP V GF+G+   P P++DSE+EHI+ + +   ++P  ++ 
Sbjct: 65  GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPSINID 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            EVGE V ++ G F    G++  ++ EK  + + V +F R T VE+ ++Q+EK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176


>gi|198277431|ref|ZP_03209962.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135]
 gi|198269929|gb|EDY94199.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135]
          Length = 180

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +    L   V+++ IP+E+   VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAVSGKENKVKEYLDADIKHGNLGDYVSQVLIPTEKTYQVRNGKKIVKERTYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  ++P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGLDHPVPLRQSEVNRILGTVDELQESGEDLN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V VS GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL +  VEK
Sbjct: 125 IPYTVGETVKVSVGPFSGFSGLIEEVNAEKRKLKVMVKIFGRKTPLELGFTDVEK 179


>gi|283783657|ref|YP_003374411.1| transcription termination/antitermination factor NusG [Gardnerella
           vaginalis 409-05]
 gi|298252884|ref|ZP_06976678.1| transcription antitermination protein [Gardnerella vaginalis 5-1]
 gi|283441617|gb|ADB14083.1| transcription termination/antitermination factor NusG [Gardnerella
           vaginalis 409-05]
 gi|297533248|gb|EFH72132.1| transcription antitermination protein [Gardnerella vaginalis 5-1]
          Length = 298

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 12/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R+   GL+  + +I +P E V    +  K    R   PG
Sbjct: 113 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 172

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           YVLI+    +     +++T  V GF+G    P+P++  E+  +M  + A+          
Sbjct: 173 YVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDKP 232

Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               +    V ++VG++V V+DGPF++   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 233 AAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGFN 292

Query: 172 QVEKIV 177
           QVE IV
Sbjct: 293 QVEPIV 298


>gi|269977529|ref|ZP_06184498.1| transcription termination/antitermination factor NusG [Mobiluncus
           mulieris 28-1]
 gi|269934284|gb|EEZ90849.1| transcription termination/antitermination factor NusG [Mobiluncus
           mulieris 28-1]
          Length = 264

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY+V  YS+ EK+  ++I  R++ + G++  + ++ IP E  + V+   +    R   P
Sbjct: 74  RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 133

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
           GYVL++  M +  +  +KDTP V GF+G  ++P P+T  E+  ++    A   +   +  
Sbjct: 134 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 193

Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                           FEVG+ V ++ GPF +    +  +  + S++ V V IF R TPV
Sbjct: 194 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 253

Query: 167 ELAYNQVEKIV 177
           EL ++QVEKI+
Sbjct: 254 ELNFDQVEKIL 264


>gi|154148460|ref|YP_001407185.1| transcription antitermination protein NusG [Campylobacter hominis
           ATCC BAA-381]
 gi|153804469|gb|ABS51476.1| transcription termination/antitermination factor NusG
           [Campylobacter hominis ATCC BAA-381]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E     +I    +  GL+  + EI +P+E ++ ++  ++    R  
Sbjct: 1   MALKWYAIQTYAGSEMAVKRAIESMATDLGLEEQIGEILVPTEDIIEIKNQKETIRSRSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  PKV  F+G  + PSP+++ +I  I+ +V      P   
Sbjct: 61  YPGYCFANLDLDTALWHRIQMLPKVSRFIGEAKRPSPLSEKDINLILEKV-NKKDAPKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           ++FE GE V + DGPFA+FNGIV+  D    ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IYFEQGETVRIIDGPFANFNGIVEEYDMLHGKLRLNVSIFGRSTPVEILYSQVEKIV 176


>gi|189465406|ref|ZP_03014191.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM
           17393]
 gi|189437680|gb|EDV06665.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM
           17393]
          Length = 180

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  + P P+  SE+  I+  V+         S
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDATEELS 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|146299698|ref|YP_001194289.1| NusG antitermination factor [Flavobacterium johnsoniae UW101]
 gi|146154116|gb|ABQ04970.1| transcription antitermination protein nusG [Flavobacterium
           johnsoniae UW101]
          Length = 183

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K    I   ++R G++  V+++ +P+E+VV+V++G+K++ ++ +FP
Sbjct: 7   KKWYVVRAVSGQENKVKAYIETEIARLGMEDYVSQVLVPTEKVVTVKEGKKMSKDKVYFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
           GYV+I+A +  ++ H IK    VIGFLG   G  P P+  SE+  ++ +V+  AV     
Sbjct: 67  GYVMIEANLVGEIPHIIKSITSVIGFLGEIKGGEPVPLRLSEVNRMLGKVDELAVNTDTR 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ F +GE V V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 127 SIPFSLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183


>gi|116514973|ref|YP_802602.1| hypothetical protein BCc_024 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256827|gb|ABJ90509.1| transcription antitermination protein [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 180

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++Q +S  E + ++SI        +  +  ++ IPSE V+ ++KG++  S+ +FFP
Sbjct: 6   KKWYVLQTFSGFENQVLQSIINNEKIKKMKEIFGKVIIPSEEVIEIKKGKRKKSDYKFFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GY+LI  +M +  +H IK+ PKV+GF+G+  E P+PV + EI  I+++++    +P    
Sbjct: 66  GYILIHMIMNNYSWHIIKNLPKVLGFIGSSSEQPTPVNNHEINLILDKLKKIGDKPRPKK 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE V V+DGPF+ FNGIV+ +D EK+R+ V V IFGR TPVEL + QVEK
Sbjct: 126 IFEPGENVRVNDGPFSDFNGIVETIDYEKNRLKVSVSIFGRSTPVELDFRQVEK 179


>gi|91205973|ref|YP_538328.1| transcription antitermination protein NusG [Rickettsia bellii
           RML369-C]
 gi|157826663|ref|YP_001495727.1| transcription antitermination protein NusG [Rickettsia bellii OSU
           85-389]
 gi|122425301|sp|Q1RHC5|NUSG_RICBR RecName: Full=Transcription antitermination protein nusG
 gi|91069517|gb|ABE05239.1| Transcription antitermination protein NusG [Rickettsia bellii
           RML369-C]
 gi|157801967|gb|ABV78690.1| transcription antitermination protein NusG [Rickettsia bellii OSU
           85-389]
          Length = 190

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 2/174 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY++   S  E +    +  R+S+  +     +I +P   V  V++ + V  E++  
Sbjct: 17  TKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLM 76

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+LIK  MTDK +H +K+ P V GFLG+   P  +T+SEI++I  ++E   +    + 
Sbjct: 77  PSYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNI--RLETEAKEAKDAK 134

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +EVGE V V++GPF +F G V+ VD+EK+R+ V V IFG+ TP+EL++ QV+K
Sbjct: 135 LYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188


>gi|169333758|ref|ZP_02860951.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259607|gb|EDS73573.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM
           17244]
          Length = 185

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+   YS  E K  E+I   + R  +  ++ E+ +P  +V   + G +   E++ FPGY
Sbjct: 19  WYVAHTYSGYENKVKENIEAAVIRRNMSDIIEEVVVPMHKVEETKNGERKVVEKKVFPGY 78

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+K  MTD  ++ +++T  V GF+G    P P+T+ E+     +    +++   +   +
Sbjct: 79  VLVKMYMTDDAWYIVRNTRGVTGFVGPASKPVPLTEEEL-----RNLGIIEKETITTDLK 133

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           VG+ + V  GPF S+ G+++ ++ +K+++ V + +FGR TPVEL + QV K
Sbjct: 134 VGDEIEVLSGPFESYTGVIEEINIDKAKLKVNISMFGRETPVELDFTQVSK 184


>gi|269219033|ref|ZP_06162887.1| transcription termination/antitermination factor NusG [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269212144|gb|EEZ78484.1| transcription termination/antitermination factor NusG [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 274

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 13/185 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  EK+  + +  R+    ++  + +I +P E V  +R+G++    R   PG
Sbjct: 88  RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           YVLI+  +TD  +  ++ T  V GF+G G  P  ++++E+  ++  V  A          
Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAG 207

Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                 P +   + VG+ V ++  P+A     V  VD    R+ V + + G+ TPVEL++
Sbjct: 208 KAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELSF 267

Query: 171 NQVEK 175
           NQV K
Sbjct: 268 NQVRK 272


>gi|483834|dbj|BAA04282.1| NusG [Streptomyces coelicolor A3(2)]
          Length = 300

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P + VV ++ G +    +   PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQKEVVQIKNGDRKTIRQNKLPGY 172

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++   T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 173 VLVRMDYTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 293 SFDQIQK 299


>gi|313893043|ref|ZP_07826620.1| transcription termination/antitermination factor NusG [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313442396|gb|EFR60811.1| transcription termination/antitermination factor NusG [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 178

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K   ++  ++   GL  +++ I +P E  +  + G K   +R+ FP
Sbjct: 5   KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++  + D+ ++ +++TP V GF+G+   P P++DSE+EHI+ + +   ++P  +V 
Sbjct: 65  GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            EVGE V ++ G F    G++  ++ EK  + + V +F R T VE+ ++Q+EK
Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176


>gi|237666465|ref|ZP_04526450.1| transcription termination/antitermination factor NusG [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|237657664|gb|EEP55219.1| transcription termination/antitermination factor NusG [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 182

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L+ L+ +I +P E V+  + G++  S ++ FPG
Sbjct: 15  RWYVVHTYSGYENKVKANLEKAIENRNLESLIQDIQVPMEEVIEEKDGKQKVSLKKKFPG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++T  V GF+G G  P P++D E+E +       V      +  
Sbjct: 75  YVLVKMLMSDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM------GVLEMPVDIDL 128

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           EVGE + +  GP       ++ +  EK ++   V +FGR T  EL +NQVEK+V
Sbjct: 129 EVGESIKIISGPLRDSVATIQEIVLEKRKIKALVDMFGRETLAELDFNQVEKLV 182


>gi|319900912|ref|YP_004160640.1| transcription antitermination protein nusG [Bacteroides helcogenes
           P 36-108]
 gi|319415943|gb|ADV43054.1| transcription antitermination protein nusG [Bacteroides helcogenes
           P 36-108]
          Length = 180

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  + P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQESGEDLN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|315654868|ref|ZP_07907773.1| transcription termination/antitermination factor NusG [Mobiluncus
           curtisii ATCC 51333]
 gi|315490829|gb|EFU80449.1| transcription termination/antitermination factor NusG [Mobiluncus
           curtisii ATCC 51333]
          Length = 271

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY+V  YS+ EK+  ++I  R++ + G++  V ++ IP E  V V+   +   +R   P
Sbjct: 80  RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKVVQRPRIP 139

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
           GYVL++  M +  +  +KDTP V GF+G  ++P P+T +E+ +++        +      
Sbjct: 140 GYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVEDG 199

Query: 122 ----------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                            FEVG+ V ++ GPF + +  +  V+ E  ++ V V IF R TP
Sbjct: 200 QVEISQATQRTAPVAADFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERETP 259

Query: 166 VELAYNQVEKI 176
           VEL +NQV KI
Sbjct: 260 VELNFNQVTKI 270


>gi|229542219|ref|ZP_04431279.1| NusG antitermination factor [Bacillus coagulans 36D1]
 gi|229326639|gb|EEN92314.1| NusG antitermination factor [Bacillus coagulans 36D1]
          Length = 177

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  + V+  +K   +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEELEVKNEKKKVVKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G G  P+P+   EI  I+ ++   ++  
Sbjct: 61  FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGGGSKPTPLLPEEINTILKRMG--MEEK 118

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + V FE+GE V V +GPFA+F G +  +D +K R  V V +FGR TPVEL + Q++KI
Sbjct: 119 RADVDFEIGETVTVKEGPFANFAGKIVEMDRDKGRAKVMVNMFGRDTPVELVFEQIDKI 177


>gi|307701857|ref|ZP_07638870.1| transcription termination/antitermination factor NusG [Mobiluncus
           mulieris FB024-16]
 gi|307612972|gb|EFN92228.1| transcription termination/antitermination factor NusG [Mobiluncus
           mulieris FB024-16]
          Length = 280

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY+V  YS+ EK+  ++I  R++ + G++  + ++ IP E  + V+   +    R   P
Sbjct: 90  RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
           GYVL++  M +  +  +KDTP V GF+G  ++P P+T  E+  ++    A   +   +  
Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209

Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                           FEVG+ V ++ GPF +    +  +  + S++ V V IF R TPV
Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269

Query: 167 ELAYNQVEKIV 177
           EL ++QVEKI+
Sbjct: 270 ELNFDQVEKIL 280


>gi|303239009|ref|ZP_07325539.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
 gi|302593347|gb|EFL63065.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
          Length = 177

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   ++   +    +   + +I +P E  + ++ G+K  + ++ FPG
Sbjct: 11  KWYVVHTYSGYENKVKANLEKIVENRSMQEYILDIVVPMEEQIEIKDGKKKATLKKVFPG 70

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K +M+D+ ++ +++   V GF+G G  P P++D E+          V+  +  + +
Sbjct: 71  YVLVKMIMSDESWYVVRNCRGVTGFVGPGSKPVPLSDEEVR------VMGVEEFMPVLDY 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ V V+ GP  +F GIV+ ++ EK +V V V +FGR TPVEL   Q++KI
Sbjct: 125 EVGDNVRVATGPLENFIGIVEEINFEKKKVRVSVSMFGRETPVELELFQIQKI 177


>gi|53715482|ref|YP_101474.1| transcription anti-termination protein [Bacteroides fragilis YCH46]
 gi|60683455|ref|YP_213599.1| putative transcription antitermination protein [Bacteroides
           fragilis NCTC 9343]
 gi|253566653|ref|ZP_04844106.1| transcription anti-termination protein [Bacteroides sp. 3_2_5]
 gi|255011630|ref|ZP_05283756.1| putative transcription antitermination protein [Bacteroides
           fragilis 3_1_12]
 gi|265767531|ref|ZP_06095197.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 2_1_16]
 gi|313149465|ref|ZP_07811658.1| transcription anti-termination protein [Bacteroides fragilis
           3_1_12]
 gi|52218347|dbj|BAD50940.1| transcription anti-termination protein [Bacteroides fragilis YCH46]
 gi|60494889|emb|CAH09696.1| putative transcription antitermination protein [Bacteroides
           fragilis NCTC 9343]
 gi|251944825|gb|EES85300.1| transcription anti-termination protein [Bacteroides sp. 3_2_5]
 gi|263252836|gb|EEZ24348.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 2_1_16]
 gi|301164939|emb|CBW24500.1| putative transcription antitermination protein [Bacteroides
           fragilis 638R]
 gi|313138232|gb|EFR55592.1| transcription anti-termination protein [Bacteroides fragilis
           3_1_12]
          Length = 180

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  + P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVSHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQETGEDLN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 VPYIVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|227874727|ref|ZP_03992882.1| transcription antitermination protein nusG [Mobiluncus mulieris
           ATCC 35243]
 gi|306818026|ref|ZP_07451759.1| transcription termination/antitermination factor NusG [Mobiluncus
           mulieris ATCC 35239]
 gi|227844693|gb|EEJ54847.1| transcription antitermination protein nusG [Mobiluncus mulieris
           ATCC 35243]
 gi|304649207|gb|EFM46499.1| transcription termination/antitermination factor NusG [Mobiluncus
           mulieris ATCC 35239]
          Length = 280

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY+V  YS+ EK+  ++I  R++ + G++  + ++ IP E  + V+   +    R   P
Sbjct: 90  RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
           GYVL++  M +  +  +KDTP V GF+G  ++P P+T  E+  ++    A   +   +  
Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209

Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                           FEVG+ V ++ GPF +    +  +  + S++ V V IF R TPV
Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269

Query: 167 ELAYNQVEKIV 177
           EL ++QVEKI+
Sbjct: 270 ELNFDQVEKIL 280


>gi|329962254|ref|ZP_08300260.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328530362|gb|EGF57239.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 180

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  + P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQEAGEDLN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF  F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVNYGPFTGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|289450232|ref|YP_003475548.1| transcription termination/antitermination factor NusG
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184779|gb|ADC91204.1| transcription termination/antitermination factor NusG
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 180

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K  +++   +   GL   + E+++P E  V ++ G+K   +++ +PGY
Sbjct: 14  WYVIHTYSGYENKVKDTLEQIVENRGLQDYIQEVSVPVEEQVEIKDGKKKVVQKKLYPGY 73

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+K ++TD++++ +++T  V GF+G  +        E   IM  ++         + + 
Sbjct: 74  VLVKMILTDEMWYIVRNTRGVTGFVGPNK--PVPLSEEELAIMGLLKDWD----PVIDYA 127

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           VG+ V V +GP  SF G V+ ++ EK +V V V +FGR TPVEL + QV +++
Sbjct: 128 VGDSVKVINGPLESFIGTVEEINMEKKKVRVLVSMFGRETPVELEFTQVLRLL 180


>gi|160888411|ref|ZP_02069414.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492]
 gi|270294764|ref|ZP_06200965.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. D20]
 gi|317477763|ref|ZP_07936956.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 4_1_36]
 gi|156862088|gb|EDO55519.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492]
 gi|270274011|gb|EFA19872.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. D20]
 gi|316906108|gb|EFV27869.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 4_1_36]
          Length = 180

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  E P P+  SE+  I+  V+   +     S
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQESGEDLS 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|212213263|ref|YP_002304199.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212]
 gi|212218059|ref|YP_002304846.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154]
 gi|215918918|ref|NP_819269.2| transcription termination/antitermination factor NusG [Coxiella
           burnetii RSA 493]
 gi|206583803|gb|AAO89783.2| transcription antitermination protein [Coxiella burnetii RSA 493]
 gi|212011673|gb|ACJ19054.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212]
 gi|212012321|gb|ACJ19701.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154]
          Length = 188

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++  YS  E   V+ +   +    LD    EI +P+E VV +R GRK  S+R+FFP
Sbjct: 21  KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 80

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++ VM DK    ++  P+V+ F+G       +TD +   I+ +VE    +P   V 
Sbjct: 81  GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 134

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 135 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187


>gi|172039966|ref|YP_001799680.1| transcription antitermination protein NusG [Corynebacterium
           urealyticum DSM 7109]
 gi|171851270|emb|CAQ04246.1| transcription antitermination protein [Corynebacterium urealyticum
           DSM 7109]
          Length = 294

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 26/198 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R    G+D  + E+ +P E V  ++ G++   +R+  PGY
Sbjct: 96  WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVTELKDGKRKQVKRKLLPGY 155

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           VL++  + D  +  ++DTP V  F+G    P+PV   E+   +                 
Sbjct: 156 VLVRIELDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETATAAAEDQGQDA 215

Query: 108 ---------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                      V          V +EVGE V +  GPFAS    +  +D  ++R+   V 
Sbjct: 216 ADVDVSATGVAVPPKPASETVEVDYEVGESVTILSGPFASVAATISEIDTVQNRLKAMVS 275

Query: 159 IFGRVTPVELAYNQVEKI 176
           IFGR TPVEL ++QV K+
Sbjct: 276 IFGRETPVELEFDQVAKL 293


>gi|237786433|ref|YP_002907138.1| transcription antitermination protein NusG [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759345|gb|ACR18595.1| transcription antitermination protein [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 353

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 26/198 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYIVQ YS  E K    +  R    G+D  + E+ +P E  V V+ G++   + +  PGY
Sbjct: 155 WYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPGY 214

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------NQVEAAVQRP 117
           VL++  + D  +  I+DTP +  F+G   +P+PV   E+   +        + E   + P
Sbjct: 215 VLMRIELDDASWSVIRDTPGITSFVGNEGHPTPVKIREVAKFLLPPETATQKAEQEGEEP 274

Query: 118 -------------------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                                 V +EVGE V V  GPFAS +  +  +D E S++   V 
Sbjct: 275 AAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALVS 334

Query: 159 IFGRVTPVELAYNQVEKI 176
           IFGR TPVEL ++QVEKI
Sbjct: 335 IFGRETPVELDFDQVEKI 352


>gi|229824601|ref|ZP_04450670.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271]
 gi|229785972|gb|EEP22086.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271]
          Length = 179

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++  YS  E K  E+I  R     +   +  I +P E VV    G +     + 
Sbjct: 1   MSKEWYVLHTYSGYENKVKENIEMRTESMNMQDHIFRIAVPEEEVVEKTDGVEKKKVEKT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++  M+D+ +  +++TP V GF+G+   G  PSP+   EI  I+       QR 
Sbjct: 61  FPGYVLVEMEMSDEAWFIVRNTPGVTGFVGSHGAGSKPSPLLPEEIAAILGDAPMPSQRV 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             +V  E G+ V + DG F+  +G ++ +D +  ++ V + +FGR T  EL + QV+K
Sbjct: 121 ELNV--EEGDYVSIIDGAFSGLSGQIEEIDRDHDKLKVVIEMFGRETVAELDFVQVKK 176


>gi|221194673|ref|ZP_03567730.1| transcription termination/antitermination factor NusG [Atopobium
           rimae ATCC 49626]
 gi|221185577|gb|EEE17967.1| transcription termination/antitermination factor NusG [Atopobium
           rimae ATCC 49626]
          Length = 184

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 7/180 (3%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG----RKVNS 56
           M  RWY++  YS  E K +  +  R+   GL   V ++  P E V  V+K          
Sbjct: 1   MAKRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTK 60

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           E +F+PGYVL++  + D  +  +++TP V GFLG    PSP+   E   +M +       
Sbjct: 61  EVKFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDGKPSPLRREEFNKMMRRSGGKADA 120

Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                 +   EVG+ V V  GP A F+GIV  V+ E  ++ V + IFGR TPVEL  +Q+
Sbjct: 121 TTLKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180


>gi|261338353|ref|ZP_05966237.1| transcription termination/antitermination factor NusG
           [Bifidobacterium gallicum DSM 20093]
 gi|270277028|gb|EFA22882.1| transcription termination/antitermination factor NusG
           [Bifidobacterium gallicum DSM 20093]
          Length = 290

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 102/186 (54%), Gaps = 12/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   +I  R++  GL+ ++ ++ +P E V    +  K    R   PG
Sbjct: 105 KWYVLHTYSGYEKRVKSNIESRVASFGLEDVIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 164

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111
           YVLI+    +     +++T  V GF+G    P+P++  E+  ++  +             
Sbjct: 165 YVLIRMYPDENARRIVRETEGVTGFVGPTREPAPLSRQEVVSMLAPMIASQALKDAGDKP 224

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           AA ++    V F  G++V V+DGPFA+ + +V +V+    +++V V IFGR TPVEL ++
Sbjct: 225 AAAKKRTIEVSFAPGDQVTVTDGPFATMSAVVSDVEPTTQKLNVLVSIFGRDTPVELGFD 284

Query: 172 QVEKIV 177
           QVEK+V
Sbjct: 285 QVEKLV 290


>gi|119963130|ref|YP_948675.1| transcription termination/antitermination factor NusG [Arthrobacter
           aurescens TC1]
 gi|119949989|gb|ABM08900.1| transcription termination/antitermination factor NusG [Arthrobacter
           aurescens TC1]
          Length = 300

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + EI +P E VV ++  ++    R   PGY
Sbjct: 118 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 177

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++  +TD  +  ++ TP V GF+G   NP P+   E+  ++  V    Q         
Sbjct: 178 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEQGKPVNK 237

Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                  V FEVGE V V +GPF +    +  +  E   + V V IF R TPV LA+NQV
Sbjct: 238 QNQAPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 297

Query: 174 EKI 176
            KI
Sbjct: 298 TKI 300


>gi|297192720|ref|ZP_06910118.1| transcription antitermination protein nusG [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721624|gb|EDY65532.1| transcription antitermination protein nusG [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 298

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 170

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 231 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 290

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 291 SFDQIQK 297


>gi|323358913|ref|YP_004225309.1| transcription antiterminator [Microbacterium testaceum StLB037]
 gi|323275284|dbj|BAJ75429.1| transcription antiterminator [Microbacterium testaceum StLB037]
          Length = 376

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 17/191 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y+  E+K   +I  R S   ++  + ++ +P E VV ++ G++    R   PG
Sbjct: 186 KWYVIHSYAGFERKVKANIEQRKSTLEVEDDIYQVEVPMEDVVEIKNGQRKMVNRVRIPG 245

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
           YVL++  + +  +  ++ TP V GF+G   NP+P+   E  +++  +    +   +    
Sbjct: 246 YVLVRMDLNEDTWSVVRHTPGVTGFVGNAHNPTPLRFEEAFNMLKSLVEVKEAAPTKAGA 305

Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                         V FE GE + + +G FA   G +  +  E  ++ V V +F R TPV
Sbjct: 306 AKGAPVATRSLPAEVDFETGETITIKEGSFAGLPGTISEIKPESGKLTVLVSLFERETPV 365

Query: 167 ELAYNQVEKIV 177
           EL+++QV K++
Sbjct: 366 ELSFDQVTKML 376


>gi|302543380|ref|ZP_07295722.1| transcription antitermination protein NusG [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460998|gb|EFL24091.1| transcription antitermination protein NusG [Streptomyces
           himastatinicus ATCC 53653]
          Length = 276

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 89  WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 148

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 149 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKATAEEGG 208

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 209 APAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 268

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 269 SFDQIQK 275


>gi|328884386|emb|CCA57625.1| Transcription antitermination protein NusG [Streptomyces venezuelae
           ATCC 10712]
          Length = 299

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N ++   PGY
Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKGGERKNVKQNKLPGY 171

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231

Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                    V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 232 KPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 292 SFDQIQK 298


>gi|161506934|ref|YP_001576888.1| transcription antiterminator [Lactobacillus helveticus DPC 4571]
 gi|160347923|gb|ABX26597.1| transcription antiterminator [Lactobacillus helveticus DPC 4571]
          Length = 185

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R+   G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KQWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E++ ++       ++P  
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              FE+GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K
Sbjct: 127 --NFEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK 180


>gi|38233045|ref|NP_938812.1| transcription antitermination protein NusG [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199304|emb|CAE48935.1| Putative transcription antitermination protein [Corynebacterium
           diphtheriae]
          Length = 263

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     ++  + ++ +P E+ + +R G++   +R+  PGY
Sbjct: 73  WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAIELRDGKRKLVKRKLLPGY 132

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  + D+ +  ++DTP V  F+G   N +PV   ++   +                 
Sbjct: 133 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEATESEAVNAEGEK 192

Query: 109 --QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
              +     +P ++V FEVGE V +  G FAS +  +  +D E +++   V IFGR TPV
Sbjct: 193 VVAMPTDSTKPKTAVDFEVGEAVTILSGAFASVSATISGIDHENAKIQALVSIFGRETPV 252

Query: 167 ELAYNQVEKI 176
           ELA++QVEKI
Sbjct: 253 ELAFDQVEKI 262


>gi|239929535|ref|ZP_04686488.1| transcription antitermination protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 266

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +   ++   PGY
Sbjct: 79  WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 138

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 139 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 198

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 199 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 258

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 259 SFDQIQK 265


>gi|319937663|ref|ZP_08012066.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1]
 gi|319807098|gb|EFW03712.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1]
          Length = 185

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K  E++  R+   GL   +  I IP      ++ G+K+N  +  FPG
Sbjct: 10  RWYVVNTYSGHENKVKENLEKRVESMGLQDCLFNIVIPEHVETEIKDGKKINKTKNMFPG 69

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           YVL++ +MTD+ ++ +++T  V GF+   G G  P P+   EI+ I+ ++   +Q     
Sbjct: 70  YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKHEIDPILKRMG--IQTTQLE 127

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  G+ V V  GPFA   G V+++D EK    V V   G  TP+E+   Q+EK+
Sbjct: 128 INYAEGDEVKVLSGPFAGKQGKVESIDREKEVATVLVDFLGNATPMEVELIQLEKV 183


>gi|218131350|ref|ZP_03460154.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697]
 gi|317476377|ref|ZP_07935626.1| transcription termination/antitermination factor NusG [Bacteroides
           eggerthii 1_2_48FAA]
 gi|329956685|ref|ZP_08297258.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
 gi|217986282|gb|EEC52619.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697]
 gi|316907403|gb|EFV29108.1| transcription termination/antitermination factor NusG [Bacteroides
           eggerthii 1_2_48FAA]
 gi|328524057|gb|EGF51133.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
          Length = 180

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  E P P+  SE+  I+  V+         +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEELN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|227894581|ref|ZP_04012386.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM
           16047]
 gi|227863572|gb|EEJ70993.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM
           16047]
          Length = 198

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 20  KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E+E ++       +RP +
Sbjct: 80  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKRPTA 139

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +    +GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 140 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 194


>gi|126663347|ref|ZP_01734345.1| transcription anti-termination protein [Flavobacteria bacterium
           BAL38]
 gi|126625005|gb|EAZ95695.1| transcription anti-termination protein [Flavobacteria bacterium
           BAL38]
          Length = 183

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 114/176 (64%), Gaps = 3/176 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  S  E K    I    +R G+   ++++ +P+E+VV+VR G+K+  ++ +FPG
Sbjct: 8   KWYVVRAVSGQENKVKAYIETETARLGMADYISQVLVPTEKVVTVRDGKKIAKDKVYFPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           Y++I+A +T ++ H IK  P VIGFLG   G +  P+  SE+  ++ +V+    +  S +
Sbjct: 68  YIMIEANLTGEIPHIIKSIPGVIGFLGETKGGDAVPLRQSEVNRMLGKVDELSVKVDSVA 127

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + + +GE V V DGPF  FNG ++ V+EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 128 IPYNIGETVKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183


>gi|114799751|ref|YP_760699.1| transcription termination/antitermination factor NusG [Hyphomonas
           neptunium ATCC 15444]
 gi|114739925|gb|ABI78050.1| transcription termination/antitermination factor NusG [Hyphomonas
           neptunium ATCC 15444]
          Length = 180

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 4/180 (2%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  +WYIV  YSN EKK   +I  +  R GL HL+ EI +P+E VV V +G+K   E+R
Sbjct: 1   MSDAKWYIVHAYSNFEKKVAATIREQAERKGLLHLIEEIEVPTEEVVEVARGKKKTVEKR 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQ-VEAAVQR 116
           FFPGYVL+KA +TD +YH +KDTPKV GFLG   G+ P PV   E++ I+ + V+   +R
Sbjct: 61  FFPGYVLMKAQLTDDIYHLVKDTPKVSGFLGAEGGKKPLPVRQREVDRILGKSVDPTAER 120

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           P   V FE+GE+V V+DGPF  F G V+ +DE   R+ V V IFGR TPV+L ++QV KI
Sbjct: 121 PRPKVSFEIGEQVQVNDGPFQGFEGAVEEIDEANGRLKVTVSIFGRGTPVDLEFDQVVKI 180


>gi|326334492|ref|ZP_08200703.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693261|gb|EGD35189.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 182

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K    I   +SR G    V ++ +P+E+V  +R G+K+N E+ FF
Sbjct: 5   EKKWYVVRAVSGQENKVKSYIESEISRLGYADYVEQVLVPTEKVPQLRNGKKINVEKVFF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           PGYV++KA ++ +V H IK+   VIGFLG   G  P+P+  SE+  ++  V+   ++   
Sbjct: 65  PGYVMVKADLSGEVSHIIKNISGVIGFLGETKGGTPTPIRKSEVNRMLGIVDELQEKVET 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + +E+GE V V DGPF  F G V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 125 VLIPYEIGESVKVIDGPFNGFTGNVEKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182


>gi|325964183|ref|YP_004242089.1| transcription termination/antitermination factor NusG [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470270|gb|ADX73955.1| transcription termination/antitermination factor NusG [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 274

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + EI +P E VV ++  ++    R   PGY
Sbjct: 92  WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 151

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++  +TD  +  ++ TP V GF+G   NP P+   E+  ++  V    Q         
Sbjct: 152 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 211

Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                  V FEVGE V V +GPF +    +  +  E   + V V IF R TPV LA+NQV
Sbjct: 212 QHQTPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 271

Query: 174 EKI 176
            KI
Sbjct: 272 TKI 274


>gi|329938257|ref|ZP_08287708.1| putative transcription antitermination factor NusG [Streptomyces
           griseoaurantiacus M045]
 gi|329302746|gb|EGG46636.1| putative transcription antitermination factor NusG [Streptomyces
           griseoaurantiacus M045]
          Length = 303

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G +    +   PGY
Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 175

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108
           VL++  +T++ +  +++TP V GF+G   +P P++  EI  ++                 
Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 235

Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           +     +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 296 SFDQIQK 302


>gi|150392173|ref|YP_001322222.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149952035|gb|ABR50563.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
          Length = 172

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I       G++ L+ E+ +P+E  + ++ G+K   E + +PG
Sbjct: 6   KWYVVHTYSGHENKVKINIEKMAENRGMEDLILEVAVPTEEKIEIKNGKKKTKEVKLYPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K  +TD+ ++ +++T  V GF+G    P P+TD E++++       V++    +  
Sbjct: 66  YVLLKMHVTDESWYLVRNTRGVTGFVGPSSKPIPLTDREVKNM------GVEQVSHEIDI 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++G+ + V  GPF SF G +++++ EK  + V + +FGR TPVEL ++QV+ +
Sbjct: 120 KIGDSIRVVSGPFESFMGSIEHINMEKQTIRVLISMFGRETPVELEFHQVQAL 172


>gi|81429286|ref|YP_396287.1| transcription antitermination protein NusG [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610929|emb|CAI55981.1| Transcription antitermination protein NusG [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 182

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 5/179 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   ++  R    G+++ V  + +P E    ++ G+     ++ F
Sbjct: 6   EKSWYVLHTYSGYENKVKANLESRAQSMGMENNVFRVVVPEEEEHEIKNGKDKVDMKKTF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VM+D+ +  +++TP V GF+G+   G  P+P+ D EI  I+ Q+   +    
Sbjct: 66  PGYVLVEMVMSDEAWFVVRNTPGVTGFVGSHGAGSKPAPLLDDEISQILRQLG--MSTRH 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
             V F+VGE V + DG F+   G +  VD+EK ++ V + +FGR T  EL Y+QV+++V
Sbjct: 124 LDVEFKVGESVKIVDGAFSGLVGQITEVDDEKMKLKVNIDMFGRETATELDYDQVDELV 182


>gi|332169100|gb|AEE18355.1| NusG antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
          Length = 184

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY+V+  S  E K    I   +SR  L+  + E+ +P+E+V+ +R G+KVN ER +F
Sbjct: 7   TKQWYVVRAVSGQENKVKAYIEQEISRLNLEDSIEEVLVPTEKVIQIRNGKKVNKERVYF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           PGY+++KA +  ++ H IK    VIGFLG   G +P P+  SE+  ++ +V+    +  S
Sbjct: 67  PGYIMVKANLGGEIPHIIKSINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVKQDS 126

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            S+ F +GE + V DGPF  FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 ISIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184


>gi|259500947|ref|ZP_05743849.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners DSM 13335]
 gi|302190601|ref|ZP_07266855.1| transcription antiterminator [Lactobacillus iners AB-1]
 gi|309803749|ref|ZP_07697835.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804673|ref|ZP_07698738.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806514|ref|ZP_07700518.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808458|ref|ZP_07702357.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809223|ref|ZP_07703093.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312871558|ref|ZP_07731651.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872528|ref|ZP_07732596.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873886|ref|ZP_07733924.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 2052A-d]
 gi|312874827|ref|ZP_07734846.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 2053A-b]
 gi|315653972|ref|ZP_07906888.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus iners ATCC 55195]
 gi|325912459|ref|ZP_08174854.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners UPII 143-D]
 gi|325913127|ref|ZP_08175497.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners UPII 60-B]
 gi|329920454|ref|ZP_08277186.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners SPIN 1401G]
 gi|259167641|gb|EEW52136.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners DSM 13335]
 gi|308164158|gb|EFO66419.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166065|gb|EFO68283.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 09V1-c]
 gi|308167113|gb|EFO69288.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168286|gb|EFO70405.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170457|gb|EFO72480.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311089572|gb|EFQ47997.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090562|gb|EFQ48968.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091890|gb|EFQ50266.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092953|gb|EFQ51304.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners LEAF 3008A-a]
 gi|315488668|gb|EFU78314.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus iners ATCC 55195]
 gi|325475801|gb|EGC78972.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners UPII 143-D]
 gi|325477548|gb|EGC80690.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners UPII 60-B]
 gi|328936130|gb|EGG32583.1| transcription termination/antitermination factor NusG
           [Lactobacillus iners SPIN 1401G]
          Length = 183

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E+K  + +  R    G+   +  + +P  +   V +G++   + + FP
Sbjct: 7   KQWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKVDEKVFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D EI+ I+   +   +    
Sbjct: 67  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRILA--DQNKEAAPQ 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           S  FEVGE V +++GPF +  G + ++  +K ++ V + +FGR T  EL + QV+K
Sbjct: 125 SYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKK 180


>gi|307328012|ref|ZP_07607193.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113]
 gi|306886317|gb|EFN17322.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113]
          Length = 304

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G + N  +   PGY
Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEESG 236

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 237 MPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 297 SFDQIQK 303


>gi|229015498|ref|ZP_04172496.1| Transcription antitermination protein nusG [Bacillus cereus AH1273]
 gi|229021707|ref|ZP_04178289.1| Transcription antitermination protein nusG [Bacillus cereus AH1272]
 gi|228739575|gb|EEL89989.1| Transcription antitermination protein nusG [Bacillus cereus AH1272]
 gi|228745785|gb|EEL95789.1| Transcription antitermination protein nusG [Bacillus cereus AH1273]
          Length = 177

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V +R G++   +R+ 
Sbjct: 1   MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMRNGKEKLMKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119
           FPGYVL++ +MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V 
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177


>gi|315925316|ref|ZP_07921527.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621217|gb|EFV01187.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 179

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 6/174 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P+WY+   YS  E K   SI   +   G++ ++ ++ +P++ VV  + G+KV  E++ FP
Sbjct: 9   PQWYVAHTYSGYENKVKASIEATVEHRGMEDVILQVEVPTQDVVETKNGKKVIKEKKLFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV+++  MTD  ++ +++T  V GF+G    P P++  E+  +  +      R    + 
Sbjct: 69  GYVIVQMYMTDDSWYVVRNTRGVTGFVGPASKPVPLSPEELRKMGIR------RQQVEID 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             VG++V + DGPF    G V+ ++ EKS++ V + +FGR T  EL ++Q EK+
Sbjct: 123 LAVGDQVKIIDGPFEGMAGEVEVINLEKSKIKVNLSVFGRETLTELDFDQAEKL 176


>gi|116671541|ref|YP_832474.1| NusG antitermination factor [Arthrobacter sp. FB24]
 gi|116611650|gb|ABK04374.1| NusG antitermination factor [Arthrobacter sp. FB24]
          Length = 287

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + EI +P E VV ++  ++    R   PGY
Sbjct: 106 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 165

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++  +TD  +  ++ TP V GF+G   NP P+   E+  ++  V    Q         
Sbjct: 166 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVKH 225

Query: 121 ------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                 V FEVGE V V +GPF +    +  +  +   + V V IF R TPV LA+NQV 
Sbjct: 226 AAAPVDVDFEVGESVIVKEGPFETLPATISEIKVDSQTLVVLVSIFERETPVTLAFNQVT 285

Query: 175 KI 176
           KI
Sbjct: 286 KI 287


>gi|315037590|ref|YP_004031158.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112]
 gi|312275723|gb|ADQ58363.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112]
          Length = 185

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  V   +G+K   E + FP
Sbjct: 7   KKWYVLHTYSGYEDKVKSDVLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E+E ++       + P +
Sbjct: 67  GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTA 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +    +GE V +++G F    G + ++  +K +++V V +FGR T  EL Y+QV+K+
Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181


>gi|209364194|ref|YP_001425195.2| transcription antitermination protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207082127|gb|ABS78422.2| transcription antitermination protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 188

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++  YS  E   V+ +   +    LD    EI +P+E VV +R GRK  S+R+FFP
Sbjct: 21  KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 80

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++ VM DK    ++  P+V+ F+G       +TD +   I+ +VE    +P   V 
Sbjct: 81  GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 134

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 135 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187


>gi|224537804|ref|ZP_03678343.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520624|gb|EEF89729.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 180

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVREYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  + P P+  SE+  I+  V+         +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDAGEELN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|169634599|ref|YP_001708335.1| transcription antitermination protein [Acinetobacter baumannii SDF]
 gi|169797458|ref|YP_001715251.1| transcription antitermination protein [Acinetobacter baumannii AYE]
 gi|184156618|ref|YP_001844957.1| transcription antiterminator [Acinetobacter baumannii ACICU]
 gi|213155728|ref|YP_002317773.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii AB0057]
 gi|215484895|ref|YP_002327134.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii AB307-0294]
 gi|239500983|ref|ZP_04660293.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii AB900]
 gi|260556350|ref|ZP_05828569.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii ATCC 19606]
 gi|294838493|ref|ZP_06783176.1| transcription antitermination protein [Acinetobacter sp. 6013113]
 gi|294840899|ref|ZP_06785582.1| transcription antitermination protein [Acinetobacter sp. 6014059]
 gi|294859137|ref|ZP_06796906.1| transcription antitermination protein [Acinetobacter sp. 6013150]
 gi|301346453|ref|ZP_07227194.1| transcription antitermination protein [Acinetobacter baumannii
           AB056]
 gi|301512021|ref|ZP_07237258.1| transcription antitermination protein [Acinetobacter baumannii
           AB058]
 gi|301597215|ref|ZP_07242223.1| transcription antitermination protein [Acinetobacter baumannii
           AB059]
 gi|169150385|emb|CAM88282.1| transcription antitermination protein [Acinetobacter baumannii AYE]
 gi|169153391|emb|CAP02518.1| transcription antitermination protein [Acinetobacter baumannii]
 gi|183208212|gb|ACC55610.1| Transcription antiterminator [Acinetobacter baumannii ACICU]
 gi|193076139|gb|ABO10752.2| transcription antitermination protein [Acinetobacter baumannii ATCC
           17978]
 gi|213054888|gb|ACJ39790.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii AB0057]
 gi|213985795|gb|ACJ56094.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii AB307-0294]
 gi|260410405|gb|EEX03704.1| transcription termination/antitermination factor NusG
           [Acinetobacter baumannii ATCC 19606]
 gi|322506505|gb|ADX01959.1| nusG [Acinetobacter baumannii 1656-2]
 gi|323516384|gb|ADX90765.1| transcription antiterminator [Acinetobacter baumannii TCDC-AB0715]
          Length = 177

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     ++ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVMRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  +KSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177


>gi|187932833|ref|YP_001884461.1| transcription antitermination protein NusG [Clostridium botulinum B
           str. Eklund 17B]
 gi|187720986|gb|ACD22207.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum B str. Eklund 17B]
          Length = 173

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L+ L+ ++ +P E V+  + G++  S ++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVIEEKDGKQKVSLKKKFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIK +MTD+ ++ +++T  V GF+G G  P P++D E+E +       V      +  
Sbjct: 66  YVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM------GVLEMPVEIDL 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           EVGE + +  GP       ++ +  +K ++   V +FGR T  EL +NQVEK+V
Sbjct: 120 EVGESIRIISGPLRDSVAKIQEIVLDKKKIKALVDMFGRETLAELDFNQVEKLV 173


>gi|163938104|ref|YP_001642988.1| transcription antitermination protein NusG [Bacillus
           weihenstephanensis KBAB4]
 gi|229009605|ref|ZP_04166831.1| Transcription antitermination protein nusG [Bacillus mycoides DSM
           2048]
 gi|229053942|ref|ZP_04195376.1| Transcription antitermination protein nusG [Bacillus cereus AH603]
 gi|229131103|ref|ZP_04260015.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-ST196]
 gi|229165084|ref|ZP_04292879.1| Transcription antitermination protein nusG [Bacillus cereus AH621]
 gi|163860301|gb|ABY41360.1| NusG antitermination factor [Bacillus weihenstephanensis KBAB4]
 gi|228618347|gb|EEK75377.1| Transcription antitermination protein nusG [Bacillus cereus AH621]
 gi|228652316|gb|EEL08241.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-ST196]
 gi|228721360|gb|EEL72881.1| Transcription antitermination protein nusG [Bacillus cereus AH603]
 gi|228751627|gb|EEM01427.1| Transcription antitermination protein nusG [Bacillus mycoides DSM
           2048]
          Length = 177

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++  ++R+ 
Sbjct: 1   MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKITKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119
           FPGYVL++ +MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V 
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 DFEFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177


>gi|300857721|ref|YP_003782704.1| transcription antitermination protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685175|gb|ADK28097.1| transcription antitermination protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205463|gb|ADL09805.1| Transcription anti-termination protein NusG [Corynebacterium
           pseudotuberculosis C231]
          Length = 276

 Score =  154 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     ++  + ++ +P E+ V +R G++   +R+  PGY
Sbjct: 81  WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 140

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  + D+ +  ++DTP V  F+G   N +PV   ++   +                 
Sbjct: 141 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 200

Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +  A  +P   V F+VGE V +  G  AS +  +  +D E +++   V IFG
Sbjct: 201 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 260

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEK+
Sbjct: 261 RETPVELNFDQVEKV 275


>gi|255692646|ref|ZP_05416321.1| transcription termination/antitermination factor NusG [Bacteroides
           finegoldii DSM 17565]
 gi|260621622|gb|EEX44493.1| transcription termination/antitermination factor NusG [Bacteroides
           finegoldii DSM 17565]
          Length = 180

 Score =  154 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  E P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVSHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|91215203|ref|ZP_01252175.1| putative transcription antitermination protein [Psychroflexus
           torquis ATCC 700755]
 gi|91186808|gb|EAS73179.1| putative transcription antitermination protein [Psychroflexus
           torquis ATCC 700755]
          Length = 183

 Score =  154 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 111/177 (62%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K  + I   +S  GL   V +I +P+E VV +R G+K+  E+ +FP
Sbjct: 7   KKWYVVRSISGSENKVKDYIEKEISHQGLSDYVDDILVPTENVVQIRDGKKITKEKVYFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEA-AVQRPVS 119
           GY+++ A +  +V H IK+   VIGFLG  +   P P+ +SE+  ++ +V+  + Q+   
Sbjct: 67  GYIMVNANLEGEVGHVIKNVNGVIGFLGETKRGDPVPMRESEVNRMLGKVDQLSTQKENV 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ F +GE + V DGPF SF G +  ++E+K ++ V V IFGR TPVEL+Y QVEKI
Sbjct: 127 AIPFNIGESIKVVDGPFNSFTGTIDKINEDKRKLQVMVKIFGRKTPVELSYMQVEKI 183


>gi|30018366|ref|NP_829997.1| transcription antitermination protein NusG [Bacillus cereus ATCC
           14579]
 gi|30260287|ref|NP_842664.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Ames]
 gi|42779177|ref|NP_976424.1| transcription antitermination protein NusG [Bacillus cereus ATCC
           10987]
 gi|49183130|ref|YP_026382.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Sterne]
 gi|49476713|ref|YP_034448.1| transcription antitermination protein NusG [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|50196907|ref|YP_016699.2| transcription antitermination protein NusG [Bacillus anthracis str.
           'Ames Ancestor']
 gi|52145121|ref|YP_081707.1| transcription antitermination protein NusG [Bacillus cereus E33L]
 gi|65317556|ref|ZP_00390515.1| COG0250: Transcription antiterminator [Bacillus anthracis str.
           A2012]
 gi|118475865|ref|YP_893016.1| transcription antitermination protein NusG [Bacillus thuringiensis
           str. Al Hakam]
 gi|170689570|ref|ZP_02880756.1| transcription antitermination protein NusG [Bacillus anthracis str.
           A0465]
 gi|177655596|ref|ZP_02936977.1| transcription antitermination protein NusG [Bacillus anthracis str.
           A0174]
 gi|206972266|ref|ZP_03233213.1| transcription antitermination protein NusG [Bacillus cereus AH1134]
 gi|217957671|ref|YP_002336215.1| transcription antitermination protein NusG [Bacillus cereus AH187]
 gi|218231706|ref|YP_002364945.1| transcription antitermination protein NusG [Bacillus cereus B4264]
 gi|218895231|ref|YP_002443642.1| transcription antitermination protein NusG [Bacillus cereus G9842]
 gi|222093866|ref|YP_002527916.1| transcription antitermination protein nusg [Bacillus cereus Q1]
 gi|225862148|ref|YP_002747526.1| transcription antitermination protein NusG [Bacillus cereus
           03BB102]
 gi|227812769|ref|YP_002812778.1| transcription antitermination protein NusG [Bacillus anthracis str.
           CDC 684]
 gi|228898849|ref|ZP_04063131.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           IBL 4222]
 gi|228905893|ref|ZP_04069790.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           IBL 200]
 gi|228912835|ref|ZP_04076482.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228919046|ref|ZP_04082425.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228925349|ref|ZP_04088445.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931598|ref|ZP_04094504.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228937398|ref|ZP_04100044.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228943902|ref|ZP_04106287.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228950644|ref|ZP_04112778.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228956537|ref|ZP_04118333.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228963196|ref|ZP_04124365.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228970284|ref|ZP_04130943.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976854|ref|ZP_04137266.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           Bt407]
 gi|228983351|ref|ZP_04143564.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229027944|ref|ZP_04184097.1| Transcription antitermination protein nusG [Bacillus cereus AH1271]
 gi|229041001|ref|ZP_04189764.1| Transcription antitermination protein nusG [Bacillus cereus AH676]
 gi|229067861|ref|ZP_04201178.1| Transcription antitermination protein nusG [Bacillus cereus F65185]
 gi|229089227|ref|ZP_04220508.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-42]
 gi|229107782|ref|ZP_04237418.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock1-15]
 gi|229119758|ref|ZP_04249019.1| Transcription antitermination protein nusG [Bacillus cereus
           95/8201]
 gi|229125613|ref|ZP_04254645.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-Cer4]
 gi|229136942|ref|ZP_04265569.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-ST26]
 gi|229142902|ref|ZP_04271343.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-ST24]
 gi|229148505|ref|ZP_04276761.1| Transcription antitermination protein nusG [Bacillus cereus m1550]
 gi|229153874|ref|ZP_04282004.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
           4342]
 gi|229159269|ref|ZP_04287293.1| Transcription antitermination protein nusG [Bacillus cereus
           R309803]
 gi|229170947|ref|ZP_04298548.1| Transcription antitermination protein nusG [Bacillus cereus MM3]
 gi|229176696|ref|ZP_04304100.1| Transcription antitermination protein nusG [Bacillus cereus
           172560W]
 gi|229182490|ref|ZP_04309741.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
           6E1]
 gi|229188381|ref|ZP_04315429.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
           10876]
 gi|229194486|ref|ZP_04321289.1| Transcription antitermination protein nusG [Bacillus cereus m1293]
 gi|229604171|ref|YP_002864747.1| transcription termination/antitermination factor NusG [Bacillus
           anthracis str. A0248]
 gi|254684400|ref|ZP_05148260.1| transcription antitermination protein NusG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254733749|ref|ZP_05191464.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739418|ref|ZP_05197118.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Kruger B]
 gi|254751209|ref|ZP_05203247.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Vollum]
 gi|254756808|ref|ZP_05208836.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Australia 94]
 gi|300119593|ref|ZP_07057137.1| transcription antitermination protein NusG [Bacillus cereus SJ1]
 gi|301051833|ref|YP_003790044.1| transcription antitermination protein NusG [Bacillus anthracis CI]
 gi|29893906|gb|AAP07198.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
           14579]
 gi|30253608|gb|AAP24150.1| transcription termination/antitermination factor NusG [Bacillus
           anthracis str. Ames]
 gi|42735092|gb|AAS39032.1| transcription antitermination protein NusG [Bacillus cereus ATCC
           10987]
 gi|49177057|gb|AAT52433.1| transcription antitermination protein NusG [Bacillus anthracis str.
           Sterne]
 gi|49328269|gb|AAT58915.1| transcription antitermination factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|50082969|gb|AAT29174.2| transcription antitermination protein NusG [Bacillus anthracis str.
           'Ames Ancestor']
 gi|51978590|gb|AAU20140.1| transcription antitermination factor [Bacillus cereus E33L]
 gi|118415090|gb|ABK83509.1| transcription antitermination protein nusG [Bacillus thuringiensis
           str. Al Hakam]
 gi|170666483|gb|EDT17260.1| transcription antitermination protein NusG [Bacillus anthracis str.
           A0465]
 gi|172080060|gb|EDT65158.1| transcription antitermination protein NusG [Bacillus anthracis str.
           A0174]
 gi|206732840|gb|EDZ50015.1| transcription antitermination protein NusG [Bacillus cereus AH1134]
 gi|217068204|gb|ACJ82454.1| transcription antitermination protein NusG [Bacillus cereus AH187]
 gi|218159663|gb|ACK59655.1| transcription termination/antitermination factor NusG [Bacillus
           cereus B4264]
 gi|218543346|gb|ACK95740.1| transcription antitermination protein NusG [Bacillus cereus G9842]
 gi|221237914|gb|ACM10624.1| transcription antitermination factor [Bacillus cereus Q1]
 gi|225790801|gb|ACO31018.1| transcription termination/antitermination factor NusG [Bacillus
           cereus 03BB102]
 gi|227003815|gb|ACP13558.1| transcription termination/antitermination factor NusG [Bacillus
           anthracis str. CDC 684]
 gi|228588952|gb|EEK46967.1| Transcription antitermination protein nusG [Bacillus cereus m1293]
 gi|228595055|gb|EEK52826.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
           10876]
 gi|228600945|gb|EEK58514.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
           6E1]
 gi|228606739|gb|EEK64156.1| Transcription antitermination protein nusG [Bacillus cereus
           172560W]
 gi|228612487|gb|EEK69708.1| Transcription antitermination protein nusG [Bacillus cereus MM3]
 gi|228624161|gb|EEK80963.1| Transcription antitermination protein nusG [Bacillus cereus
           R309803]
 gi|228629555|gb|EEK86252.1| Transcription antitermination protein nusG [Bacillus cereus ATCC
           4342]
 gi|228634921|gb|EEK91494.1| Transcription antitermination protein nusG [Bacillus cereus m1550]
 gi|228640523|gb|EEK96912.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-ST24]
 gi|228646480|gb|EEL02687.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-ST26]
 gi|228657805|gb|EEL13611.1| Transcription antitermination protein nusG [Bacillus cereus
           BDRD-Cer4]
 gi|228663659|gb|EEL19238.1| Transcription antitermination protein nusG [Bacillus cereus
           95/8201]
 gi|228675631|gb|EEL30839.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock1-15]
 gi|228694066|gb|EEL47748.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-42]
 gi|228715220|gb|EEL67079.1| Transcription antitermination protein nusG [Bacillus cereus F65185]
 gi|228727298|gb|EEL78492.1| Transcription antitermination protein nusG [Bacillus cereus AH676]
 gi|228733332|gb|EEL84161.1| Transcription antitermination protein nusG [Bacillus cereus AH1271]
 gi|228776341|gb|EEM24694.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228782824|gb|EEM30990.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           Bt407]
 gi|228789393|gb|EEM37313.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228796454|gb|EEM43893.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228803102|gb|EEM49924.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228808995|gb|EEM55480.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228815735|gb|EEM61971.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822231|gb|EEM68213.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228828026|gb|EEM73754.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834271|gb|EEM79812.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228840571|gb|EEM85833.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228846771|gb|EEM91776.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228853708|gb|EEM98468.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           IBL 200]
 gi|228860749|gb|EEN05127.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           IBL 4222]
 gi|229268579|gb|ACQ50216.1| transcription termination/antitermination factor NusG [Bacillus
           anthracis str. A0248]
 gi|298723065|gb|EFI63963.1| transcription antitermination protein NusG [Bacillus cereus SJ1]
 gi|300374002|gb|ADK02906.1| transcription antitermination protein NusG [Bacillus cereus biovar
           anthracis str. CI]
 gi|324324086|gb|ADY19346.1| transcription antitermination protein NusG [Bacillus thuringiensis
           serovar finitimus YBT-020]
 gi|326937890|gb|AEA13786.1| transcription antitermination protein NusG [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 177

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++   +R+ 
Sbjct: 1   MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119
           FPGYVL++ +MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V 
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177


>gi|237734019|ref|ZP_04564500.1| transcription antitermination protein nusG [Mollicutes bacterium
           D7]
 gi|229382845|gb|EEO32936.1| transcription antitermination protein nusG [Coprobacillus sp. D7]
          Length = 182

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 5/175 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K  E++  R+   GL  ++ +I IP      ++ G+K+N  +  FPG
Sbjct: 7   QWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFPG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           YVL++ +MTD+ ++ +++T  V GF+   G G  P P+  SE++ I+ ++   +      
Sbjct: 67  YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKMG--LSTSSIE 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V +  G+ V V  GPFA  +G V+++D EK    V V   G +TP+E+   Q+EK
Sbjct: 125 VDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 179


>gi|228472143|ref|ZP_04056909.1| transcription termination/antitermination factor NusG
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276346|gb|EEK15070.1| transcription termination/antitermination factor NusG
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 182

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V+  S  E K    I   +SR G    V ++ +P+E+V  +R G+KVN E+ FF
Sbjct: 5   EKNWYVVRAVSGQENKVKNYIESEISRLGYGDYVEQVLVPTEKVPQLRNGKKVNVEKVFF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           PGYV+IKA ++ ++ H IK    VIGFLG   G  P+P+  SE+  ++  V+   ++  +
Sbjct: 65  PGYVMIKADLSGEISHLIKGISGVIGFLGETKGGAPTPIRKSEVNRMLGIVDELQEKVDT 124

Query: 120 S-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + +EVGE V V DGPF  F G V  V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 125 VLIPYEVGESVKVIDGPFNGFTGNVDKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182


>gi|162448675|ref|YP_001611042.1| transcription antitermination protein NusG [Sorangium cellulosum
           'So ce 56']
 gi|161159257|emb|CAN90562.1| transcription antitermination protein NusG [Sorangium cellulosum
           'So ce 56']
          Length = 176

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 2/176 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
           M  +WY++  YS  E K  +++  R+ +  L+    EI IPSE V   R G K    ++ 
Sbjct: 1   MAKKWYVIHTYSGYEAKVRDALQQRVKQYSLEDRFGEILIPSETVTENRPGGKTRVRQKL 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
             PGY+ ++  M ++V+H +KDTPKV GF+G  + P  V   +I+++   +     +P  
Sbjct: 61  SLPGYIFVEMEMNEQVWHLVKDTPKVTGFIGN-QTPQEVPIVQIDNLRRGIVEGAVKPKP 119

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + FEVGE V V DG FA+F G V +V  +K ++ V+V IFGR T VEL ++ VEK
Sbjct: 120 RLTFEVGEEVRVLDGAFANFTGTVDDVKMDKQKLKVKVSIFGRPTSVELDFSAVEK 175


>gi|326802933|ref|YP_004320751.1| transcription termination/antitermination factor NusG [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650638|gb|AEA00821.1| transcription termination/antitermination factor NusG [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 186

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 97/178 (54%), Gaps = 6/178 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFF 61
            +WY++  YS  E K  E++  R++   ++  +  + +P E      + G++   + + F
Sbjct: 9   KQWYVLHTYSGYENKVKENLESRITSMDMEEYIFRVVVPEEEKLQKNKSGQEKVVKTQTF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYV ++ +M+D+ +  +++TP V GFLG+   G  P P+   E+  ++      +  P 
Sbjct: 69  PGYVFVEMIMSDEAWFVVRNTPNVTGFLGSHGQGSKPVPLLPDEVHRLLR--SQGISAPK 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + FE GE V V DG F    G ++ +DEE  ++ + + +FGR T  E+ ++QV+K+
Sbjct: 127 RDISFEDGEVVEVIDGAFLGLEGRIEEIDEEHQKLKLTIEMFGRETIAEVDFDQVDKL 184


>gi|167756033|ref|ZP_02428160.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402]
 gi|167704025|gb|EDS18604.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402]
          Length = 185

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 5/175 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K  E++  R+   GL  ++ +I IP      ++ G+K+N  +  FPG
Sbjct: 10  QWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFPG 69

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           YVL++ +MTD+ ++ +++T  V GF+   G G  P P+  SE++ I+ ++   +      
Sbjct: 70  YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKMG--LSTSSIE 127

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V +  G+ V V  GPFA  +G V+++D EK    V V   G +TP+E+   Q+EK
Sbjct: 128 VDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 182


>gi|148653838|ref|YP_001280931.1| NusG antitermination factor [Psychrobacter sp. PRwf-1]
 gi|148572922|gb|ABQ94981.1| transcription antitermination protein nusG [Psychrobacter sp.
           PRwf-1]
          Length = 176

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIVQ +S  EK+    +  R++RS       E+ +P+E VV ++ G+K  SER+FFP
Sbjct: 1   MRWYIVQAFSGYEKQVQRYLTDRINRSEFADKFGEVLVPTEEVVEMKDGKKRKSERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H + D P++ GF+G   ENP+P+T  E + I+N+++ + + P    
Sbjct: 61  GYVLVEMEMNDDTWHIVNDCPRITGFIGGTPENPAPITKVEADRILNRLKQSEEAPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE V V DGPF  F G+V+ VD EKS++ + V +F R T VEL +++VEK+
Sbjct: 121 LFEPGEEVLVIDGPFTDFKGLVEKVDYEKSKLQLTVNVFNRPTQVELEFSKVEKL 175


>gi|229074157|ref|ZP_04207203.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock4-18]
 gi|229094818|ref|ZP_04225823.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-29]
 gi|229100895|ref|ZP_04231699.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-28]
 gi|229113772|ref|ZP_04243207.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock1-3]
 gi|228669643|gb|EEL25050.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock1-3]
 gi|228682474|gb|EEL36547.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-28]
 gi|228688561|gb|EEL42434.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock3-29]
 gi|228708927|gb|EEL61054.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock4-18]
          Length = 177

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++   +R+ 
Sbjct: 1   MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKIMKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119
           FPGYVL++ +MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V 
Sbjct: 61  FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177


>gi|289705066|ref|ZP_06501477.1| transcription termination/antitermination factor NusG [Micrococcus
           luteus SK58]
 gi|289558229|gb|EFD51509.1| transcription termination/antitermination factor NusG [Micrococcus
           luteus SK58]
          Length = 294

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 22/193 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  EK+   ++  R+    ++  + EI +P E VV ++   +    R   PGY
Sbjct: 100 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVRIPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV------TDSEIEHIMNQVEAAVQR-- 116
           VL++  + D  +  ++ TP V GF+G   +           D     ++ +   A ++  
Sbjct: 160 VLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYDMLAPSVIQEAARAAEKAG 219

Query: 117 --------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                         P   V FEVGE V V+DGPF +    +  +  E  ++ V V IF R
Sbjct: 220 LAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFER 279

Query: 163 VTPVELAYNQVEK 175
            TPV L++NQV K
Sbjct: 280 ETPVTLSFNQVTK 292


>gi|256390118|ref|YP_003111682.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928]
 gi|256356344|gb|ACU69841.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928]
          Length = 262

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 102/178 (57%), Gaps = 7/178 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +  +++  R++   ++  + ++ +P E VV ++ G++   +R  FPGY
Sbjct: 83  WYVIHSYAGYENRVKQNLETRMTTLNMEEFIFQVEVPMEEVVEIKGGQRKRVKRNKFPGY 142

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------RP 117
           VL++  +T++ +  +++TP V GF+G    P P+T  E+  I+ + +             
Sbjct: 143 VLVRMDLTNESWGVVRNTPGVTGFVGNAHEPYPLTLDEVVKILLEEQPEEVSGKQKAPAE 202

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V  + FEVG+ V V DGPFA+    +  ++ +  +V   V IFGR TPVEL++NQ++K
Sbjct: 203 VKVLDFEVGDSVTVIDGPFATLQATINEINADSQKVKGLVEIFGRETPVELSFNQIQK 260


>gi|29348148|ref|NP_811651.1| transcription anti-termination protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|153805945|ref|ZP_01958613.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185]
 gi|160883078|ref|ZP_02064081.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483]
 gi|237717387|ref|ZP_04547868.1| transcription anti-termination protein [Bacteroides sp. D1]
 gi|237718755|ref|ZP_04549236.1| transcription anti-termination protein [Bacteroides sp. 2_2_4]
 gi|253569578|ref|ZP_04846988.1| transcription anti-termination protein [Bacteroides sp. 1_1_6]
 gi|260175404|ref|ZP_05761816.1| transcription anti-termination protein [Bacteroides sp. D2]
 gi|262406152|ref|ZP_06082702.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 2_1_22]
 gi|293372131|ref|ZP_06618522.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|298386169|ref|ZP_06995726.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 1_1_14]
 gi|298483052|ref|ZP_07001233.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. D22]
 gi|299144635|ref|ZP_07037703.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_23]
 gi|315923634|ref|ZP_07919874.1| transcription anti-termination protein [Bacteroides sp. D2]
 gi|29340051|gb|AAO77845.1| transcription anti-termination protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|149130622|gb|EDM21828.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185]
 gi|156111550|gb|EDO13295.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483]
 gi|229443370|gb|EEO49161.1| transcription anti-termination protein [Bacteroides sp. D1]
 gi|229451887|gb|EEO57678.1| transcription anti-termination protein [Bacteroides sp. 2_2_4]
 gi|251841597|gb|EES69678.1| transcription anti-termination protein [Bacteroides sp. 1_1_6]
 gi|262357027|gb|EEZ06117.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 2_1_22]
 gi|292632923|gb|EFF51510.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|295085440|emb|CBK66963.1| transcription antitermination protein nusG [Bacteroides
           xylanisolvens XB1A]
 gi|298261397|gb|EFI04264.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 1_1_14]
 gi|298270796|gb|EFI12376.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. D22]
 gi|298515126|gb|EFI39007.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_23]
 gi|313697509|gb|EFS34344.1| transcription anti-termination protein [Bacteroides sp. D2]
          Length = 180

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   L  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  E P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|312880652|ref|ZP_07740452.1| transcription antitermination protein nusG [Aminomonas paucivorans
           DSM 12260]
 gi|310783943|gb|EFQ24341.1| transcription antitermination protein nusG [Aminomonas paucivorans
           DSM 12260]
          Length = 181

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 100/176 (56%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RW+IVQ YS  E K   ++  R++  G++  V  + +P E  V V+ G+     R+ F
Sbjct: 6   ERRWFIVQTYSGYENKVKANLDQRIATMGMEERVFRVLVPVEERVYVKDGKTKRMRRKVF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL++ ++ D+ ++ ++ TP V GF+G+G +P P+T+ E+  IM ++     +P   +
Sbjct: 66  PSYVLVEMILDDQSWYVVRHTPGVTGFVGSGNHPIPLTEKEVAEIMGKIGKDQAKPKMEI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            F++G+ V V  GPF    G V  +  +K +V   + +FGR T VE  +  +EKI+
Sbjct: 126 AFKIGDTVRVKAGPFEGQVGPVAEIVPDKGKVKFTITVFGRETLVEADHTDLEKIL 181


>gi|302876547|ref|YP_003845180.1| NusG antitermination factor [Clostridium cellulovorans 743B]
 gi|307687220|ref|ZP_07629666.1| transcription antitermination protein NusG [Clostridium
           cellulovorans 743B]
 gi|302579404|gb|ADL53416.1| NusG antitermination factor [Clostridium cellulovorans 743B]
          Length = 173

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  +S  E K   ++   +    L +   +I IP    V  + G++  + ++  PG
Sbjct: 6   KWYVVNTFSGYENKVKATLEKSIDNRNLHNYFYDIQIPMSEEVEEKDGKQKVALKKLLPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV IK +MTD  ++ +++T  V GF+G    P  +T+ EI+ +       +    ++V  
Sbjct: 66  YVFIKMIMTDDTWYIVRNTRGVSGFVGPAGKPVSLTNEEIDRM------GINDTPATVDM 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVGE V ++ G    FN  +  V+ EK ++   V +FGR TP EL + QVEK+
Sbjct: 120 EVGETVLITSGALKGFNAQITEVNIEKQKIKGLVDMFGRETPAELDFAQVEKL 172


>gi|187735541|ref|YP_001877653.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835]
 gi|187425593|gb|ACD04872.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835]
          Length = 189

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++ V S  E    + I  +   + L   +  + +P+E +  VR G+K     + FPG
Sbjct: 10  QWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKLFPG 69

Query: 64  YVLIKA-------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           YV            +   +++ I+    VI   G+   P P+   E+E ++  ++A    
Sbjct: 70  YVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSRNAPLPMRKREVEDLLPLLDAEAVA 129

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               V F VG+ V V +GPF S  G ++ +D EK ++ V V IFGR TPV+L Y QVEK
Sbjct: 130 ARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQVEK 188


>gi|86131812|ref|ZP_01050409.1| transcriptional antitermination factor NusG [Dokdonia donghaensis
           MED134]
 gi|85817634|gb|EAQ38808.1| transcriptional antitermination factor NusG [Dokdonia donghaensis
           MED134]
          Length = 184

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY+V+  S  E K    I   +SR  L+  + E+ +P+E+V+ +R G+KVN ER +F
Sbjct: 7   TKQWYVVRAVSGQENKVKAYIEQEISRLSLEDNIEEVLVPTEKVIQIRNGKKVNKERVYF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           PGY+++KA +  ++ H IK    VIGFLG   G +P P+  +E+  ++ +V+    +  S
Sbjct: 67  PGYIMVKANLAGEIPHIIKSINGVIGFLGEVKGGDPVPLRKAEVNRMLGKVDELAVKQDS 126

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F +GE + V DGPF  FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 VAIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184


>gi|317052115|ref|YP_004113231.1| transcription termination/antitermination factor NusG
           [Desulfurispirillum indicum S5]
 gi|316947199|gb|ADU66675.1| transcription termination/antitermination factor NusG
           [Desulfurispirillum indicum S5]
          Length = 172

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 4/176 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K  E++  R+S  GL   +T+I IP+E V   + G+K    R+ 
Sbjct: 1   MALSWYVIHAYSGYENKVQEALEERVSSLGLQDKITQILIPTENVAEYKGGKKKIVTRKR 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV ++  M    +H +K+ PKV GF+G G  P  + DSE++ +   +E+  +     
Sbjct: 61  YPGYVYVQMEMDKTTWHVVKNIPKVTGFIG-GNKPVAIHDSEVQKL---IESDKRLVEPK 116

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V F   + V V +GPF  FNG+V +VD E+ RV V V IFGR TPVE  Y Q++KI
Sbjct: 117 VEFVERDPVEVVEGPFHGFNGVVTHVDHERKRVKVNVSIFGRETPVEFEYTQIQKI 172


>gi|78187809|ref|YP_375852.1| NusG antitermination factor [Chlorobium luteolum DSM 273]
 gi|78167711|gb|ABB24809.1| transcription antitermination protein nusG [Chlorobium luteolum DSM
           273]
          Length = 192

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 105/175 (60%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY +++YS  E+K  E I   + RSGL   + ++ +P E+ V V+ G+K +  +  F
Sbjct: 16  AARWYALRIYSGHERKVKEGIDAEVERSGLGDKILQVYVPYEKFVEVKNGKKRSMTKNAF 75

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI+AV+  +  + I D P ++GFLG  +NP P+   E+E ++    +   R +   
Sbjct: 76  PGYVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPEASVEHRTIIEA 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F+VG+ V V DGPF+S  G+V +V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 136 PFQVGDSVKVIDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 190


>gi|188589977|ref|YP_001919660.1| transcription antitermination protein NusG [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251779965|ref|ZP_04822885.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500258|gb|ACD53394.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243084280|gb|EES50170.1| transcription termination/antitermination factor NusG [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 173

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K   ++   +    L+ L+ ++ +P E VV  + G++  S ++ FPG
Sbjct: 6   RWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVVEEKDGKQKVSLKKKFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIK +MTD+ ++ +++T  V GF+G G  P P++D E+E +       V      +  
Sbjct: 66  YVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM------GVLEMPVEIDL 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           EVGE + +  GP       ++ +  +K ++   V +FGR T  EL +NQVEK+V
Sbjct: 120 EVGESIKIISGPLRDSVAKIQEIILDKKKIKALVDMFGRETLAELDFNQVEKLV 173


>gi|260550471|ref|ZP_05824681.1| transcription termination/antitermination factor NusG
           [Acinetobacter sp. RUH2624]
 gi|260406386|gb|EEW99868.1| transcription termination/antitermination factor NusG
           [Acinetobacter sp. RUH2624]
 gi|325124250|gb|ADY83773.1| transcription antitermination protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 177

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     ++ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVMRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  +KSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177


>gi|187251895|ref|YP_001876377.1| NusG antitermination factor [Elusimicrobium minutum Pei191]
 gi|186972055|gb|ACC99040.1| NusG anti-termination factor [Elusimicrobium minutum Pei191]
          Length = 178

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 104/178 (58%), Gaps = 3/178 (1%)

Query: 1   MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
           M+    WYIV   +  E K  E I  ++        + ++ +P+E VV V++ +KV  +R
Sbjct: 1   MSENKAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKR 60

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           +FFP YVL++  +T + Y  I++   V GFLG   NP P+ + EI  I++  +    +P 
Sbjct: 61  KFFPSYVLVEMDLTSEAYWFIRNVSGVTGFLG-DPNPVPLPEEEIAAILDLTQPGSGKPK 119

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + FE GE V +++GPF  F G+V+ V+ +K+++ + V +F R TPVEL + QVEKI
Sbjct: 120 HVIEFEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEKI 177


>gi|256852096|ref|ZP_05557483.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661334|ref|ZP_05862247.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934888|ref|ZP_06340120.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 208-1]
 gi|297205029|ref|ZP_06922425.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii JV-V16]
 gi|256615508|gb|EEU20698.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547789|gb|EEX23766.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301069|gb|EFA93381.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 208-1]
 gi|297149607|gb|EFH29904.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii JV-V16]
          Length = 185

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  Y+  E K    +  R    G+   +  +  P E  V   +G+K   E + F
Sbjct: 6   AKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPEETKVETVRGKKQEVEEKIF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D EI  I+       ++P 
Sbjct: 66  PGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVEAKKP- 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + FE+GE V +++G F    G + ++ E+K ++ V V +FGR T  EL Y+QV+K
Sbjct: 125 -DIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK 180


>gi|296120709|ref|YP_003628487.1| transcription termination/antitermination factor NusG [Planctomyces
           limnophilus DSM 3776]
 gi|296013049|gb|ADG66288.1| transcription termination/antitermination factor NusG [Planctomyces
           limnophilus DSM 3776]
          Length = 204

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++++ SN EK   +++  R+ + GL+    EI IP+E+VV  + G+K   E + +
Sbjct: 28  AMLWYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLY 87

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVS 119
           PGY++++ ++ D  ++ ++ T  V  F G+   P+P+ D EI  ++ + E   +   P  
Sbjct: 88  PGYLMVQMILNDDTWYIVRTTGGVGDFTGSAGKPTPMQDHEIARMLQKQEQKQESAAPAM 147

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + F VG+ V + +G F  F G + ++DE   +++V V IFGR TPVEL Y Q E+
Sbjct: 148 KIEFAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203


>gi|262280707|ref|ZP_06058490.1| transcription termination/antitermination factor NusG
           [Acinetobacter calcoaceticus RUH2202]
 gi|299771836|ref|YP_003733862.1| transcription antitermination protein [Acinetobacter sp. DR1]
 gi|262257607|gb|EEY76342.1| transcription termination/antitermination factor NusG
           [Acinetobacter calcoaceticus RUH2202]
 gi|298701924|gb|ADI92489.1| transcription antitermination protein [Acinetobacter sp. DR1]
          Length = 177

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     ++ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVLRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  EKSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177


>gi|319942159|ref|ZP_08016476.1| transcription antitermination protein nusG [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804294|gb|EFW01183.1| transcription antitermination protein nusG [Sutterella
           wadsworthensis 3_1_45B]
          Length = 179

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY + VYS+ EK    ++  R+++SG L     E+ +P+E+V  VR GRKV SERR +
Sbjct: 6   MNWYTLHVYSSMEKSVKNALEERIAQSGELRSSFGEVLLPTEKVHEVRNGRKVTSERRMY 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV I+  M D  +H +  TP++I FLG   NP P++ +E+ +I++  E +  +P   +
Sbjct: 66  PGYVFIQMEMNDATWHLVNSTPRIIEFLGN-NNPVPLSPTEVANILSAAENSSDKPRPKI 124

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE+GE V +  G F  F G V  VD +KSR++V V IFGR T V+L +N+VEKI
Sbjct: 125 EFEIGEMVRIKSGAFKDFTGRVDGVDYDKSRLNVFVSIFGRDTLVDLGFNEVEKI 179


>gi|238855649|ref|ZP_04645949.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 269-3]
 gi|260664910|ref|ZP_05865761.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii SJ-7A-US]
 gi|282933598|ref|ZP_06338967.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 208-1]
 gi|238831715|gb|EEQ24052.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 269-3]
 gi|260561393|gb|EEX27366.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii SJ-7A-US]
 gi|281302253|gb|EFA94486.1| transcription termination/antitermination factor NusG
           [Lactobacillus jensenii 208-1]
          Length = 185

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  Y+  E K    +  R    G+   +  +  P E  V   +G+K   E + F
Sbjct: 6   AKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPQETKVETVRGKKQEVEEKIF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ +  +++TP V GF+   G G  PSP+ D EI  I+       ++P 
Sbjct: 66  PGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVEAKKP- 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + FE+GE V +++G F    G + ++ E+K ++ V V +FGR T  EL Y+QV+K
Sbjct: 125 -DIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK 180


>gi|302671656|ref|YP_003831616.1| transcription termination/antitermination factor NusG [Butyrivibrio
           proteoclasticus B316]
 gi|302396129|gb|ADL35034.1| transcription termination/antitermination factor NusG [Butyrivibrio
           proteoclasticus B316]
          Length = 213

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+V  YS  E K   ++   +    L++ + E+ +P + VV V+ G + N +R+ FPG
Sbjct: 45  HWYVVHTYSGYENKVKANLEKTIENRHLENQILEVRVPLQDVVEVKNGARKNVQRKMFPG 104

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+   M D+ ++ +++T  V GF+G G  P P+TD+EI+         ++    SV F
Sbjct: 105 YVLVNMDMNDETWYVVRNTRGVTGFVGPGSKPVPLTDAEIK------PLGIKTDTISVDF 158

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+ + V  G +    G+V+ +D  K    + V +FGR TPVE+++ +V KI
Sbjct: 159 GVGDEIAVIAGVWKDTAGVVQRMDFGKQTATINVDLFGRETPVEISFAEVRKI 211


>gi|21223029|ref|NP_628808.1| transcription antitermination protein [Streptomyces coelicolor
           A3(2)]
 gi|256785873|ref|ZP_05524304.1| transcription antitermination protein [Streptomyces lividans TK24]
 gi|19858845|sp|P36266|NUSG_STRCO RecName: Full=Transcription antitermination protein nusG
 gi|7248341|emb|CAB77421.1| transcription antitermination protein [Streptomyces coelicolor
           A3(2)]
          Length = 300

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 293 SFDQIQK 299


>gi|294630860|ref|ZP_06709420.1| transcription antitermination protein NusG [Streptomyces sp. e14]
 gi|292834193|gb|EFF92542.1| transcription antitermination protein NusG [Streptomyces sp. e14]
          Length = 288

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  EK+   ++  R     ++  + +  +P E +V ++ G +    +   PGY
Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 160

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P++  EI  ++                 
Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 220

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 221 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 281 SFDQIQK 287


>gi|310829151|ref|YP_003961508.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612]
 gi|308740885|gb|ADO38545.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612]
          Length = 179

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 6/172 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+   YS  E K   SI   +    ++  + E+ +P + VV  + G++V  E++ FPGY
Sbjct: 11  WYVAHTYSGYENKVKASIEATVENRHMEDQILEVQVPVQEVVETKDGKRVVREKKLFPGY 70

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V++K  MTD  ++ +++T  V GF+G    P P+T +E++++       +++    +  E
Sbjct: 71  VMVKMFMTDDSWYVVRNTRGVTGFVGPASKPVPLTKAELKNM------GIKQQAIQIDLE 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+ V V DGPF  F GI++ ++ EKS+V V + +FGR TP EL + Q++KI
Sbjct: 125 VGDEVNVVDGPFEGFAGIIEEINLEKSKVKVNISMFGRETPTELEFEQIQKI 176


>gi|971288|dbj|BAA06985.1| nusG [Streptomyces coelicolor A3(2)]
          Length = 300

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 293 SFDQIQK 299


>gi|50954135|ref|YP_061423.1| transcription antitermination factor [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950617|gb|AAT88318.1| transcription antitermination factor [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 315

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 15/188 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y+  E++   +I  R+    ++  + E+ +P E VV ++ G++    R   PG
Sbjct: 128 KWYVIHSYAGFERRVKSNIENRMVSMNMEDYIYEVQVPMEDVVEIKNGQRKMVNRVRIPG 187

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------ 117
           YVL++  + +  +  ++ TP V GF+G   NP+P+   E   ++  +      P      
Sbjct: 188 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVQVDAAPAKGAAK 247

Query: 118 ---------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                     + V FE+GE + + +G FA   G +  +  E  ++ V V +F R TPVEL
Sbjct: 248 GQKAAARVIPAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVEL 307

Query: 169 AYNQVEKI 176
           +++QV K+
Sbjct: 308 SFDQVTKL 315


>gi|19551718|ref|NP_599720.1| transcription antitermination protein NusG [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389373|ref|YP_224775.1| transcription antitermination protein NusG [Corynebacterium
           glutamicum ATCC 13032]
 gi|7108627|gb|AAF36506.1|AF130462_3 transcriptional antiterminator protein NusG [Corynebacterium
           glutamicum]
 gi|14041187|emb|CAC38383.1| NusG protein [Corynebacterium glutamicum]
 gi|21323240|dbj|BAB97868.1| Transcription antiterminator [Corynebacterium glutamicum ATCC
           13032]
 gi|41324707|emb|CAF19189.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Corynebacterium
           glutamicum ATCC 13032]
          Length = 318

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 22/194 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     ++  + E+ +P E+V  +R G++   +R+  PGY
Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  M D+V+  ++DTP V  F+G   N +PV   ++   +                 
Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAA 243

Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                  +    ++P  +V F VGE V +  G FAS +  + ++D E  ++ V V IFGR
Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303

Query: 163 VTPVELAYNQVEKI 176
            TPV+L+++QVEK+
Sbjct: 304 ETPVDLSFDQVEKV 317


>gi|145294627|ref|YP_001137448.1| transcription antitermination protein NusG [Corynebacterium
           glutamicum R]
 gi|140844547|dbj|BAF53546.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 318

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 22/194 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     ++  + E+ +P E+V  +R G++   +R+  PGY
Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  M D+V+  ++DTP V  F+G   N +PV   ++   +                 
Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAD 243

Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                  +    ++P  +V F VGE V +  G FAS +  + ++D E  ++ V V IFGR
Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303

Query: 163 VTPVELAYNQVEKI 176
            TPV+L+++QVEK+
Sbjct: 304 ETPVDLSFDQVEKV 317


>gi|86140286|ref|ZP_01058845.1| putative transcription antitermination protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832228|gb|EAQ50677.1| putative transcription antitermination protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 184

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T  WY+V+  S  E K    I   +SR  L+  + ++ +P+E+VV +R G+K+N ER +F
Sbjct: 7   TKDWYVVRAVSGQENKVKGYIEQEISRFNLEDYIEQVLVPTEKVVQIRNGKKINKERVYF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           PGY++I A +  +V H IK    VIGFLG   G +P P+  SE+  ++ +V+    +   
Sbjct: 67  PGYIMIHANLGGEVTHMIKSINGVIGFLGETKGGDPVPLRTSEVNRMLGKVDELAVKTDN 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F +GE V V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 VAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184


>gi|262373977|ref|ZP_06067254.1| transcription termination/antitermination factor NusG
           [Acinetobacter junii SH205]
 gi|262310988|gb|EEY92075.1| transcription termination/antitermination factor NusG
           [Acinetobacter junii SH205]
          Length = 177

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     E+ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGFEKQVLRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  EKSR+ + + +F R T VEL + QVEK V
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTV 177


>gi|297624698|ref|YP_003706132.1| NusG antitermination factor [Truepera radiovictrix DSM 17093]
 gi|297165878|gb|ADI15589.1| NusG antitermination factor [Truepera radiovictrix DSM 17093]
          Length = 182

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 8/182 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V  Y   E+K   ++  R    G+   + ++ +PSE  V    G +K    R+
Sbjct: 1   MSIEWYAVHTYVGHEEKVRSNMMQRARSLGIADKIYQVVVPSEETVEHTGGGKKEVVRRK 60

Query: 60  FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            FPGYV ++  + D        +  +++TP V GF+GT     P+T  E   ++  +  A
Sbjct: 61  LFPGYVFVQMDLGDNPDEPNEAWEVVRNTPGVTGFVGTATRAVPLTPEEEARMLG-ITGA 119

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            + P   V F VG  V V+ GPFA F G+V  ++ E+ +V V V IFGR TPVEL ++QV
Sbjct: 120 KETPKVKVNFSVGNIVQVTSGPFADFTGVVSELNPERGKVKVLVSIFGRETPVELDFSQV 179

Query: 174 EK 175
            K
Sbjct: 180 IK 181


>gi|163755831|ref|ZP_02162949.1| elongation factor Tu [Kordia algicida OT-1]
 gi|161324352|gb|EDP95683.1| elongation factor Tu [Kordia algicida OT-1]
          Length = 183

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K    I   ++R GL+  V E+ +P+E+V+ +R G+K+N ER +FP
Sbjct: 7   KKWYVVRAVSGQENKVKAYIESEITRLGLEDYVEEVLVPTEKVIQIRNGKKINKERVYFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
           GY++IKA +  +V H IK    VIGFLG   G +P P+  SE+  ++ +V+    +    
Sbjct: 67  GYIMIKANIAGEVTHVIKSVTNVIGFLGEVKGGDPVPLRQSEVNRMLGKVDELSVKTDNV 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + F +GE V V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 VIPFTLGETVKVIDGPFNGFNGSVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183


>gi|302330016|gb|ADL20210.1| Transcription anti-termination protein NusG [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275699|gb|ADO25598.1| Transcription anti-termination protein NusG [Corynebacterium
           pseudotuberculosis I19]
          Length = 295

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     ++  + ++ +P E+ V +R G++   +R+  PGY
Sbjct: 100 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 159

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  + D+ +  ++DTP V  F+G   N +PV   ++   +                 
Sbjct: 160 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 219

Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +  A  +P   V F+VGE V +  G  AS +  +  +D E +++   V IFG
Sbjct: 220 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 279

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEK+
Sbjct: 280 RETPVELNFDQVEKV 294


>gi|239918213|ref|YP_002957771.1| transcription termination/antitermination factor NusG [Micrococcus
           luteus NCTC 2665]
 gi|281415596|ref|ZP_06247338.1| transcription termination/antitermination factor NusG [Micrococcus
           luteus NCTC 2665]
 gi|239839420|gb|ACS31217.1| transcription termination/antitermination factor NusG [Micrococcus
           luteus NCTC 2665]
          Length = 275

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 22/193 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  EK+   ++  R+    ++  + EI +P E VV ++   +    R   PGY
Sbjct: 81  WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVRIPGY 140

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV------TDSEIEHIMNQVEAAVQR-- 116
           VL++  + D  +  ++ TP V GF+G   +           +     ++ +   + ++  
Sbjct: 141 VLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYEMLAPSVIQEAARSAEKAG 200

Query: 117 --------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                         P   V FEVGE V V+DGPF +    +  +  E  ++ V V IF R
Sbjct: 201 LAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFER 260

Query: 163 VTPVELAYNQVEK 175
            TPV L++NQV K
Sbjct: 261 ETPVTLSFNQVTK 273


>gi|153208145|ref|ZP_01946573.1| transcription termination/antitermination factor NusG [Coxiella
           burnetii 'MSU Goat Q177']
 gi|161830723|ref|YP_001596170.1| transcription termination/antitermination factor NusG [Coxiella
           burnetii RSA 331]
 gi|165918637|ref|ZP_02218723.1| transcription termination/antitermination factor NusG [Coxiella
           burnetii RSA 334]
 gi|120576158|gb|EAX32782.1| transcription termination/antitermination factor NusG [Coxiella
           burnetii 'MSU Goat Q177']
 gi|161762590|gb|ABX78232.1| transcription termination/antitermination factor NusG [Coxiella
           burnetii RSA 331]
 gi|165917665|gb|EDR36269.1| transcription termination/antitermination factor NusG [Coxiella
           burnetii RSA 334]
          Length = 173

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++  YS  E   V+ +   +    LD    EI +P+E VV +R GRK  S+R+FFP
Sbjct: 6   KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++ VM DK    ++  P+V+ F+G       +TD +   I+ +VE    +P   V 
Sbjct: 66  GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 119

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK
Sbjct: 120 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 172


>gi|256763353|ref|ZP_05503933.1| transcription antitermination protein NusG [Enterococcus faecalis
           T3]
 gi|256684604|gb|EEU24299.1| transcription antitermination protein NusG [Enterococcus faecalis
           T3]
          Length = 180

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 6/178 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++   S  E K   +I  R    G+   +  + +P E    V+ G++     + F
Sbjct: 5   ERNWYVLH-LSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P+P+   EI HI+  +  + ++  
Sbjct: 64  PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSD 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V    G+ V + +G F+   G+V  +DEEK ++ V + +FGR T  EL + QV+ I
Sbjct: 124 LEVAL--GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 179


>gi|294644047|ref|ZP_06721824.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CC 2a]
 gi|294810199|ref|ZP_06768866.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292640571|gb|EFF58812.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CC 2a]
 gi|294442611|gb|EFG11411.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 182

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   L  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 7   EKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  E P P+  SE+  I+  V+   +     +
Sbjct: 67  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 181


>gi|194333127|ref|YP_002014987.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
 gi|194310945|gb|ACF45340.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
          Length = 191

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 105/173 (60%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY +++YS  E+K  E I   + R GL   + ++ +P ER V V+ G+K +  +  FPG
Sbjct: 17  RWYALRIYSGHERKVKEGIESEVERLGLADKLLQVYVPYERFVEVKNGKKRSLTKNAFPG 76

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI+AV+  +  + I D P V+GFLG G+ P+P+   E+E I+    +  QR V    F
Sbjct: 77  YVLIEAVLDKQTRNLIMDIPSVMGFLGVGDVPTPLRPDEVEKILEPESSVEQRSVVEAPF 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++G+ V V DGPF+S  G+V  V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 137 QIGDSVKVVDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189


>gi|229817144|ref|ZP_04447426.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM
           20098]
 gi|229784933|gb|EEP21047.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM
           20098]
          Length = 281

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R+   GL+  + +I +P E V    +  K    R   PG
Sbjct: 96  KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTEKGKKVLTRVRVPG 155

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+    ++    +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 156 YVLIRMWPDEEARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDKP 215

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPF +   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 216 AAAKKRKLEVSYAVGDQVTVTDGPFTTMPAVVSDVEPTTQKLTVLVSIFGRDTPVELDFN 275

Query: 172 QVEKI 176
           QVEK+
Sbjct: 276 QVEKL 280


>gi|294056232|ref|YP_003549890.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
           45221]
 gi|293615565|gb|ADE55720.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
           45221]
          Length = 192

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P+WY V   SN E+KA   +   +    ++  V EI +P+E V  V+ G+K    R+F+P
Sbjct: 10  PQWYAVHTLSNQEQKAKRYLDKFIPVEEMEDYVFEILMPTETVTEVKSGKKKTITRKFYP 69

Query: 63  GYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           GYV +K  + D         ++ +++   VI F+G G+ PSP+  +EI+ I+ QVE A  
Sbjct: 70  GYVFVKMRLYDDDGNLLQKPWYFVREAQGVINFVG-GDRPSPLKKAEIDRILQQVEDADG 128

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +    + +E+GE V V+DGPF +  G ++ +D EK ++ V V IFGR TPVEL Y QV++
Sbjct: 129 KEKPKIEYELGEMVKVNDGPFMNLVGKIEEIDPEKGKLKVSVSIFGRYTPVELEYWQVQR 188


>gi|291518242|emb|CBK73463.1| transcription antitermination protein nusG [Butyrivibrio
           fibrisolvens 16/4]
          Length = 176

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 2/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + ++ +P   V   + G K    ++ +
Sbjct: 3   EAKWYVVHTYSGYENKVKTNIEKAIETQKLEEQILDVRVPMVEVTETKDGVKKQVSKKMY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI+ +M D+ ++ +++T  V GF+G G  P P++++E++  +  +    ++    V
Sbjct: 63  PGYVLIEMIMNDETWYVVRNTRGVTGFVGPGSKPVPLSEAEVKAYL--LGDNTEKVNVEV 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ + V DG +    G+VK+++ +K  V + V +FGR TPVE+ +  V K+
Sbjct: 121 DFEVGDTLSVIDGTWKDTVGVVKSINAKKQTVTISVEMFGRETPVEIDFTDVRKM 175


>gi|226951781|ref|ZP_03822245.1| transcription antitermination protein [Acinetobacter sp. ATCC
           27244]
 gi|294649029|ref|ZP_06726475.1| transcription antitermination protein NusG [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837321|gb|EEH69704.1| transcription antitermination protein [Acinetobacter sp. ATCC
           27244]
 gi|292825060|gb|EFF83817.1| transcription antitermination protein NusG [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 177

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     E+ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGFEKQVMRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNLGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  +KSR+ + + +F R T VEL + QVEK V
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTV 177


>gi|189485233|ref|YP_001956174.1| transcription antitermination factor NusG [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|170287192|dbj|BAG13713.1| transcription antitermination factor NusG [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 176

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 108/177 (61%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+V VYS  E K  + +   ++   +   +++I +P+E V+ V++ +K   +R+F
Sbjct: 1   MANQWYVVHVYSGHEYKVKKGLEMTVANLNMQDTISQILVPTEEVIEVKQNKKKIKKRKF 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVS 119
           +PGY+ ++  + +  Y  I++T  V GFLG G  P P++  E+E+I+N V      +P  
Sbjct: 61  YPGYIFVEMTINNSTYWLIRNTAGVTGFLG-GVKPIPISQFEVENILNTVANPDTSKPRP 119

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +V FE  E + + +GPF  F GIV+ V+ E+ ++ V V IFGR TPVEL + QVEK+
Sbjct: 120 AVSFEKEENIRIIEGPFKHFIGIVEEVNHERGKLRVMVTIFGRHTPVELGFLQVEKM 176


>gi|289769765|ref|ZP_06529143.1| transcription antitermination protein nusG [Streptomyces lividans
           TK24]
 gi|289699964|gb|EFD67393.1| transcription antitermination protein nusG [Streptomyces lividans
           TK24]
          Length = 295

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 108 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 167

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 168 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 227

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 228 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 287

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 288 SFDQIQK 294


>gi|291295566|ref|YP_003506964.1| NusG antitermination factor [Meiothermus ruber DSM 1279]
 gi|290470525|gb|ADD27944.1| NusG antitermination factor [Meiothermus ruber DSM 1279]
          Length = 185

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59
           M+  WY V  Y   E+K  +++  R+   G+   + ++ IP+E VV  R+G +K    R+
Sbjct: 1   MSIEWYAVHTYVGHEEKVKQNLEQRVKVLGMQDKIFQVLIPTEEVVEHREGGKKEVVRRK 60

Query: 60  FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VE 111
            +PGY+ +   + D        +  +++TP V GF+GT  +P P+T  E++H++    + 
Sbjct: 61  LYPGYIYVLVDLGDTPGEVNEAWEVVRNTPGVTGFVGTATHPVPLTPDEVQHLLEIAGLA 120

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              + P   V F+ G+ V V  GPFA F G+V  V+ E+ +V V V IFGR TPVEL ++
Sbjct: 121 GKKETPKPQVTFKEGDVVRVVSGPFAEFTGVVSEVNLERQKVKVLVSIFGRETPVELEFS 180

Query: 172 QV 173
           QV
Sbjct: 181 QV 182


>gi|152991722|ref|YP_001357443.1| transcription antitermination protein NusG [Sulfurovum sp. NBC37-1]
 gi|151423583|dbj|BAF71086.1| transcriptional antitermination factor NusG [Sulfurovum sp.
           NBC37-1]
          Length = 176

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q YS  E     +I   ++  G++  V  I +P+E V+ V+ G K  +ER  
Sbjct: 1   MAFQWYAIQTYSGSELSVKRAIEQLVADYGMEDKVERIVVPTEEVIEVKNGEKKITERTL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  P+V  F+G  + P+ +T+++I+ I++++      P   
Sbjct: 61  YPGYAFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTALTEADIKVILDKM-EQKAAPRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V FE GE V + DGPFA+F G+V+  D +  ++ + V IFGR TPVE+ Y QVEKI+
Sbjct: 120 VDFETGEMVRIVDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEILYTQVEKII 176


>gi|118475193|ref|YP_892473.1| transcription antitermination protein NusG [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414419|gb|ABK82839.1| transcription termination/antitermination factor NusG
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 176

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E     +I   +   G++  + E+ +P+E V+ ++ G++  +ER  
Sbjct: 1   MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  PKV  F+G  + P+P++D +I  I+ +V      P   
Sbjct: 61  YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINLILEKVNKRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FE GE V V++GPFA+FNG V+  D    ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 ISFETGEVVRVTEGPFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 176


>gi|167041784|gb|ABZ06526.1| putative transcription termination factor nusG [uncultured marine
           microorganism HF4000_093M11]
          Length = 249

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q +S  E +  ++I  +L   GL+ LV EI IPSE V+  + G+K    +++FPG
Sbjct: 74  KWYILQAFSGYEGRVEQTIQEKLKIEGLEDLVNEIFIPSEDVIRTKDGKKRKVNQKYFPG 133

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVLI   +T  ++H + +  +V GF+G  +  P P+ +SE+E I +QV    Q+  S   
Sbjct: 134 YVLIHMELTPVLWHLLMNVNRVSGFIGGTQKNPLPLDESELETIRSQVNERFQQKASEDE 193

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           F +G++V +++G F +F+G++  ++ E+ ++ V V IFGR TPVE+ + +V+ +V
Sbjct: 194 FSLGQKVTITEGSFGNFSGVIDEINLERRKLKVLVSIFGRPTPVEVEFEKVKHVV 248


>gi|170782938|ref|YP_001711272.1| transcription antitermination protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157508|emb|CAQ02699.1| transcription antitermination protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 345

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 16/189 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y+  E++   +I  R+    ++  + +I +P E VV ++ G++    R   PG
Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
           YVL++  + +  +  ++ TP V GF+G   NP+P+   E   ++  +    +        
Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 276

Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        V FE+GE + + +G FA   G +  +  E  ++ V V +F R TPVE
Sbjct: 277 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 336

Query: 168 LAYNQVEKI 176
           L+++QV K+
Sbjct: 337 LSFDQVTKL 345


>gi|50083574|ref|YP_045084.1| transcription antitermination protein [Acinetobacter sp. ADP1]
 gi|49529550|emb|CAG67262.1| transcription antitermination protein [Acinetobacter sp. ADP1]
          Length = 177

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     E+ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVMRSLNERIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  EKSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177


>gi|260585128|ref|ZP_05852869.1| transcription termination/antitermination factor NusG
           [Granulicatella elegans ATCC 700633]
 gi|260157216|gb|EEW92291.1| transcription termination/antitermination factor NusG
           [Granulicatella elegans ATCC 700633]
          Length = 184

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 4/176 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   +I  R+S  G++  +  + +P E  V V+ G++  +  + F
Sbjct: 5   AKEWYVLHTYSGYENKVKSNIELRISSMGMEENIFRVIVPEEEEVEVKDGKEKVTINKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +M+D+ ++ +++TP V GF+G+   G  PSP+   E++ ++ ++      P 
Sbjct: 65  PGYVLVEMIMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVDTLLGRLGVPTHAP- 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  +VG+ V +++G F   +G V  +D+EK +V V + +FGR T  EL + QV+
Sbjct: 124 VDLHAKVGDYVIITEGAFDGMSGKVTEIDDEKQKVKVTIEMFGRETIAELEFYQVK 179


>gi|295837048|ref|ZP_06823981.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. SPB74]
 gi|197698951|gb|EDY45884.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. SPB74]
          Length = 284

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 97  WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 156

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 157 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 216

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 217 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 276

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 277 SFDQIQK 283


>gi|93007006|ref|YP_581443.1| NusG antitermination factor [Psychrobacter cryohalolentis K5]
 gi|92394684|gb|ABE75959.1| transcription antitermination protein nusG [Psychrobacter
           cryohalolentis K5]
          Length = 176

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIVQ +S  EK+   S+  R++RS       ++ +P+E VV ++ G+K  SER+FFP
Sbjct: 1   MRWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  M D  +H +KD P+++GF+G   E P+P+T+ E + I+N++      P    
Sbjct: 61  GYVLIQMDMNDNTWHIVKDCPRIMGFVGGTPETPAPITEVEADRILNRLNQTETDPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE + V DGPF  F G+V+ VD EKS++H+ V +F R T VEL +++VEK+
Sbjct: 121 LFEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175


>gi|116493232|ref|YP_804967.1| transcription antitermination protein nusG [Pediococcus pentosaceus
           ATCC 25745]
 gi|116103382|gb|ABJ68525.1| transcription antitermination protein nusG [Pediococcus pentosaceus
           ATCC 25745]
          Length = 181

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   ++  R    G+   +  + +P E  V  + G     ++  F
Sbjct: 5   EKNWYVLHTYSGYENKVKNNLDSRAKSMGMAEYIFRVVVPEEEEVETKNGEDKIVKKNEF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+   G+G  P+P+   E+E I+ ++        
Sbjct: 65  PGYVLVEMIMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPDEVERILRRLGMTA--RH 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  EVGE V + DG F    G +  VD    +V V + +FGR T  EL   Q++KI
Sbjct: 123 ADIEVEVGELVKIVDGAFEGLTGKITEVDNNNMKVKVNIDMFGRETSTELDIEQIDKI 180


>gi|255320104|ref|ZP_05361296.1| transcription termination/antitermination factor NusG
           [Acinetobacter radioresistens SK82]
 gi|262370138|ref|ZP_06063465.1| transcription antitermination protein [Acinetobacter johnsonii
           SH046]
 gi|262379961|ref|ZP_06073116.1| transcription termination/antitermination factor NusG
           [Acinetobacter radioresistens SH164]
 gi|255302822|gb|EET82047.1| transcription termination/antitermination factor NusG
           [Acinetobacter radioresistens SK82]
 gi|262298155|gb|EEY86069.1| transcription termination/antitermination factor NusG
           [Acinetobacter radioresistens SH164]
 gi|262315177|gb|EEY96217.1| transcription antitermination protein [Acinetobacter johnsonii
           SH046]
          Length = 177

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     E+ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQREADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + V DGPF  F G+V+ V  EKSR+ + + +F R T VEL + QVEK
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVLYEKSRLTLTINVFNRPTQVELEFRQVEK 175


>gi|167764384|ref|ZP_02436509.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC
           43183]
 gi|167697789|gb|EDS14368.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC
           43183]
          Length = 190

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 15  EKKWYVLRAISGKETKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  E P P+  SE+  I+  V+         +
Sbjct: 75  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEELN 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 135 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 189


>gi|295133023|ref|YP_003583699.1| transcription antitermination protein [Zunongwangia profunda
           SM-A87]
 gi|294981038|gb|ADF51503.1| transcription antitermination protein [Zunongwangia profunda
           SM-A87]
          Length = 183

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K  + I   +S  G++  V ++ +P+E+V+ +R G+K+N ER +FP
Sbjct: 7   KKWYVVRAVSGQENKVKDYIEREISHMGMEDWVDQVLVPTEKVIQIRNGKKINKERVYFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
           GY++I+A +  ++ H IK    VIGFLG   G +P P+  SE+  ++ +V+    +    
Sbjct: 67  GYIMIQANLGGEIPHIIKGINGVIGFLGETKGGDPVPLRQSEVNRMLGKVDELSVKTDNV 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ F +GE + V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 AIPFTLGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183


>gi|291546353|emb|CBL19461.1| transcription antitermination protein nusG [Ruminococcus sp. SR1/5]
          Length = 173

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G     +++ F
Sbjct: 4   AAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQDVVEMKNGTSRQVQKKMF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G  P P+T+ E+      +   +Q+P   V
Sbjct: 64  PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------MPLGIQKPDIEV 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F  G+ V V+ G +    G++  ++ +K  V + V +FGR TPVE+++ +++K
Sbjct: 118 DFAEGDMVVVTGGAWKDTAGVITGINMQKQTVTINVELFGRETPVEISFTEIKK 171


>gi|282882465|ref|ZP_06291086.1| transcription termination/antitermination factor NusG
           [Peptoniphilus lacrimalis 315-B]
 gi|300814586|ref|ZP_07094837.1| transcription termination/antitermination factor NusG
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|281297607|gb|EFA90082.1| transcription termination/antitermination factor NusG
           [Peptoniphilus lacrimalis 315-B]
 gi|300511205|gb|EFK38454.1| transcription termination/antitermination factor NusG
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 179

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 5/174 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K  +++   ++   ++ L+ +I +P E  V  + G     ER+ F
Sbjct: 10  AAKWYVIHTYSGYENKVKDTMEAMVANRKMEDLILDIRVPMENYVETKDGLSKAKERKMF 69

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K +M D+ ++ +++T  V GF+G    P P+++ E+      +           
Sbjct: 70  PSYVLVKMIMNDETWYLVRNTRGVTGFVGPASKPVPLSEEEVL-----LLGVTDNKELFG 124

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +E+GE V V  GPF    GI+ + + EK +V V + +FGR T VEL +NQ+ K
Sbjct: 125 NYEIGETVRVISGPFNELVGIIDSFNYEKGKVKVSISMFGRDTLVELDFNQIIK 178


>gi|171914826|ref|ZP_02930296.1| Transcription antiterminator [Verrucomicrobium spinosum DSM 4136]
          Length = 189

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++ V +  E++  E++  R+    +   V E+ +P+ERV  V+KG++  S R+ FPG
Sbjct: 10  QWYVLHVRAGLEQRVRENMERRIQSEEMGEFVFEVVVPTERVSEVKKGKRSESTRKVFPG 69

Query: 64  YVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           Y+L    + D       + +H +K+T   + F GT ++P P+   E+E ++ QV    + 
Sbjct: 70  YILANMWLLDENNKPVVQTWHFVKETDGFLNFAGTKDHPIPLRPKEVEVLLAQVREREEG 129

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                 F VG+ V V+DGPF S  GI++ +D EK  + V V IFGR TPV+L Y QVEK
Sbjct: 130 VKPKFMFSVGDTVRVADGPFESQTGIIEEIDPEKGLLRVSVNIFGRSTPVDLEYWQVEK 188


>gi|259047919|ref|ZP_05738320.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259035416|gb|EEW36671.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 181

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K   ++  R+   G++  +  + +P E  V V+ G+   +  + 
Sbjct: 1   MEKEWYVLHTYSGYENKVKSNLLSRIQSMGMEENIFRVIVPEEEEVEVKDGKTKTTVEKT 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VM+D+ ++ +++TP V GF+G+   G  PSP+   E+E I+ ++   V  P
Sbjct: 61  FPGYVLVEMVMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVEAILGRIGEKVHAP 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              +   VG+ V +++G F   +G V  +D EK ++ V + +FGR T  +L ++QV+
Sbjct: 121 -VDLHVSVGDYVIITEGAFNDMSGKVVELDHEKQKIKVAIEMFGRETIADLEFHQVK 176


>gi|313888133|ref|ZP_07821807.1| transcription termination/antitermination factor NusG
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845823|gb|EFR33210.1| transcription termination/antitermination factor NusG
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 180

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EKK   ++   +   G++ ++ +I IP E  V  + G     ER+ FP 
Sbjct: 13  KWYVIHTYSGYEKKVKANMEAMVHNRGMEDVIFDIRIPMEDYVETKDGVSKAKERKMFPS 72

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+  +M D+ ++ +++T  V GF+G    P P+TD E+      +            +
Sbjct: 73  YVLVNMIMNDETWYLVRNTRGVTGFVGPASKPVPLTDEEVL-----LLGVTDNKELFDNY 127

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E+GE V V +GPF    G + + + +K +V V + +FGR T VEL +NQ+ K
Sbjct: 128 EIGELVKVINGPFKDLVGKIDDFNYDKGKVKVCISMFGRDTIVELDFNQIIK 179


>gi|262375153|ref|ZP_06068387.1| transcription termination/antitermination factor NusG
           [Acinetobacter lwoffii SH145]
 gi|262310166|gb|EEY91295.1| transcription termination/antitermination factor NusG
           [Acinetobacter lwoffii SH145]
          Length = 177

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     E+ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE GE + V DGPF  F G+V+ V  EKSR+ + + +F R T VEL + QVEK
Sbjct: 122 MFEPGEELLVVDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEK 175


>gi|227494532|ref|ZP_03924848.1| transcription termination/antitermination factor [Actinomyces
           coleocanis DSM 15436]
 gi|226832266|gb|EEH64649.1| transcription termination/antitermination factor [Actinomyces
           coleocanis DSM 15436]
          Length = 245

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E++   ++  R+    +++ + E  +P E V  + K  K   ER   PGY
Sbjct: 64  WYVIHTYSGHERRVKANLEQRIQTQNMENFIFEAEVPMETVTELTKSGKKTVERPRIPGY 123

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---------DSEIEHIMNQVEAAVQ 115
           V+++ +MT+  +  +KDTP V+GF+G  +NP P++                + +  A   
Sbjct: 124 VIVRTIMTEASWRVVKDTPAVLGFVGDAQNPVPLSIDEVVSLLAPMWEASALKKAAATEI 183

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               ++ FE+GE V V DGPF S    V  +D    ++ V ++IF R TP+EL ++QV+K
Sbjct: 184 ITAPAITFEIGESVTVVDGPFESMEATVTEIDAAHRKLTVSILIFERETPIELNFDQVKK 243

Query: 176 I 176
           +
Sbjct: 244 L 244


>gi|293610085|ref|ZP_06692386.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827317|gb|EFF85681.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 177

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYI+  YS  EK+ + S+  R+ RS +     ++ +P+E VV ++ G+K  SER+FFP
Sbjct: 2   KRWYIIHAYSGYEKQVMRSLTERIQRSAVAGSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D  +H +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P    
Sbjct: 62  GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE + V DGPF  F G+V+ V  +KSR+ + + +F R T VEL + QVEK +
Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177


>gi|120436720|ref|YP_862406.1| transcription antitermination protein [Gramella forsetii KT0803]
 gi|117578870|emb|CAL67339.1| transcription antitermination protein [Gramella forsetii KT0803]
          Length = 185

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/178 (39%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K  + I   +   GL   + ++ +P+E+V+ +R G+KVN ER +F
Sbjct: 8   EKKWYVVRAVSGQENKVKDYIEKEIEYLGLQDAIDQVLVPTEKVIQIRNGKKVNKERVYF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           PGYV+I+A +  ++ H IK    VIGFLG   G +P P+  SE+  ++ +V+    +   
Sbjct: 68  PGYVMIQANIGGEIPHIIKGINGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELSVKADN 127

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F +GE + V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 128 VAIPFTIGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185


>gi|160892863|ref|ZP_02073652.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50]
 gi|156865422|gb|EDO58853.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50]
          Length = 174

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V  YS  E K    I   +    L   + E+++P E  + V+ G +    R+ F
Sbjct: 6   SAKWYVVHTYSGYENKVKADIEKTIENRKLQDQILEVSVPVEESIEVKNGVQKAVTRKLF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  +M D  ++ +++T  V GF+G G  P P++D E++++       + +    +
Sbjct: 66  PGYVLLNMIMNDATWYVVRNTRGVTGFVGPGSKPVPLSDDEMKYL------GINKETIVI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             EVG+ V V+ G +    G +K ++  K  + ++V IFGR T VE+A+  ++K+
Sbjct: 120 DAEVGDMVEVTAGAWEGTVGSIKAINPSKQTITIDVEIFGRATSVEIAFADIKKL 174


>gi|225164274|ref|ZP_03726545.1| NusG antitermination factor [Opitutaceae bacterium TAV2]
 gi|224801116|gb|EEG19441.1| NusG antitermination factor [Opitutaceae bacterium TAV2]
          Length = 192

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 104/180 (57%), Gaps = 8/180 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+ +   S  E K    I   ++   L   + E+ +P+E V  V+ G+K    R+ +PG
Sbjct: 12  QWFALHTLSGQENKVKLYIDKFIAPEELSDYIFEVLLPTEVVSEVKNGKKTTKTRKLYPG 71

Query: 64  YVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           YV + A + D+        ++ +K+T  VIGF+G G+ P+ +  SEI+ I  ++EAA  +
Sbjct: 72  YVFVHAKLFDEEKKLINKPWYFMKETAGVIGFVG-GDKPAALRQSEIDEIRARIEAASGK 130

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V  V +EVGE + ++DG FA+  G +  +D E+ ++ + V IFGR TPVEL Y QV++I
Sbjct: 131 EVPKVSYEVGEELKITDGAFANLTGRIDEIDPERGKLKISVSIFGRFTPVELEYWQVQRI 190


>gi|302521301|ref|ZP_07273643.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. SPB78]
 gi|302430196|gb|EFL02012.1| transcription termination/antitermination factor NusG [Streptomyces
           sp. SPB78]
          Length = 272

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +    +   PGY
Sbjct: 85  WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 144

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++                 
Sbjct: 145 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 204

Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                 +  V  + FEVG+ V V+DGPFA+    +  ++ +  +V   V IFGR TPVEL
Sbjct: 205 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 264

Query: 169 AYNQVEK 175
           +++Q++K
Sbjct: 265 SFDQIQK 271


>gi|157165039|ref|YP_001466540.1| transcription antitermination protein NusG [Campylobacter concisus
           13826]
 gi|112800025|gb|EAT97369.1| transcription termination/antitermination factor NusG
           [Campylobacter concisus 13826]
          Length = 176

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY +Q Y+  E      I   +   G++  + E+ +P+E V+ ++ G++  +ER  
Sbjct: 1   MSHKWYAIQTYAGSEMAVKRGIENLVRDHGIEDQLKEVIVPTEDVIEIKNGKQKINERTL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  PKV  F+G  + P+P+T+ +I  I+ +V+     P   
Sbjct: 61  YPGYAFACLDLDTALWHKIQSLPKVGRFIGEAKKPTPLTEKDINTILEKVQKRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +FFE GE V +++GPFA+F GIV+  D    ++ + V IFGR TPV++ Y+QVEKI+
Sbjct: 120 IFFEDGESVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVDILYSQVEKII 176


>gi|312135327|ref|YP_004002665.1| nusg antitermination factor [Caldicellulosiruptor owensensis OL]
 gi|311775378|gb|ADQ04865.1| NusG antitermination factor [Caldicellulosiruptor owensensis OL]
          Length = 174

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++   +    L   + +I IP+E V  ++ G+K+  E++ FP 
Sbjct: 7   KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIKA+M +++++TI++   V GF+G    P+P+TD EIE +        +  V     
Sbjct: 67  YVLIKAIMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ V +  GPF+ F G V  +++E+ +V V + +FGR TPVE  Y+QVE++
Sbjct: 122 EVGDNVKIVSGPFSDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174


>gi|148273972|ref|YP_001223533.1| putative transcription antitermination protein [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831902|emb|CAN02873.1| putative transcription antitermination protein [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 340

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 16/189 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y+  E++   +I  R+    ++  + +I +P E VV ++ G++    R   PG
Sbjct: 152 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 211

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120
           YVL++  + +  +  ++ TP V GF+G   NP+P+   E   ++  +    +        
Sbjct: 212 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 271

Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        V FE+GE + + +G FA   G +  +  E  ++ V V +F R TPVE
Sbjct: 272 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 331

Query: 168 LAYNQVEKI 176
           L+++QV K+
Sbjct: 332 LSFDQVTKL 340


>gi|293189019|ref|ZP_06607751.1| transcription termination/antitermination factor NusG [Actinomyces
           odontolyticus F0309]
 gi|292822050|gb|EFF80977.1| transcription termination/antitermination factor NusG [Actinomyces
           odontolyticus F0309]
          Length = 256

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+P  WY++  YS  E+K   ++  R++   ++  +  + +P E V+  R   K      
Sbjct: 68  MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------NQ 109
             PGY ++     +  Y  +K+TP V GF+G   NP P++  E+  ++            
Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            +           FEVGE V V+DGPF + +  +  +  E  ++ V V IF R TP+EL 
Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247

Query: 170 YNQVEKI 176
           ++QVEK+
Sbjct: 248 FDQVEKL 254


>gi|154508676|ref|ZP_02044318.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798310|gb|EDN80730.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC
           17982]
          Length = 256

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+P  WY++  YS  E+K   ++  R++   ++  +  + +P E V+  R   K      
Sbjct: 68  MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------NQ 109
             PGY ++     +  Y  +K+TP V GF+G   NP P++  E+  ++            
Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            +           FEVGE V V+DGPF + +  +  +  E  ++ V V IF R TP+EL 
Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247

Query: 170 YNQVEKI 176
           ++QVEK+
Sbjct: 248 FDQVEKL 254


>gi|304439415|ref|ZP_07399326.1| transcription termination/antitermination factor NusG
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372111|gb|EFM25706.1| transcription termination/antitermination factor NusG
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 179

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY++  YS  E K   ++   +    ++ ++ +I +P E  V  + G   + ER+ F
Sbjct: 10  TAKWYVIHTYSGHENKVKANMEAMVQNRHMEDVILDIQVPMEEYVEEKDGVAKSKERKLF 69

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K +M D+ ++ +++T  V GF+G G  P P++D E+  +         +     
Sbjct: 70  PSYVLVKMIMNDETWYLVRNTRGVTGFVGPGSKPVPLSDEEVLAL-----GVADKKEFFG 124

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V DGPF  F G++  +  EK +V V + +FGR T VEL++NQ+ KI
Sbjct: 125 GFEVGESVKVKDGPFEDFVGVIDAMSYEKGKVDVVISMFGRDTKVELSFNQIVKI 179


>gi|304384444|ref|ZP_07366848.1| transcription termination/antitermination factor NusG [Prevotella
           marshii DSM 16973]
 gi|304334464|gb|EFM00753.1| transcription termination/antitermination factor NusG [Prevotella
           marshii DSM 16973]
          Length = 180

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
            RWY+++  S  E K  E I   L  + L    V+++ IP ER  ++R G+++  E+   
Sbjct: 6   MRWYVLRAVSGKEAKVKEYIEAELKHNALLSSHVSQVLIPLERHTALRNGKRIVKEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV I+A +   + H ++  P V+GFLG  ENP+PV  SEI  ++   E +     +  
Sbjct: 66  PGYVFIEADLNGDIAHLLRFMPNVLGFLGGMENPTPVQQSEINRMLGNAEESELMYEADN 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + V E V V DGPF+ FNGI++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYAVNESVKVCDGPFSGFNGIIEEVNAEKRKLKVMVKIFGRKTPLELSFMQVEK 179


>gi|281358732|ref|ZP_06245208.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548]
 gi|281314759|gb|EFA98796.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548]
          Length = 193

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 8/181 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++   S  E K  + I  +L   G    V E  IP+E+V  VR+G+K  + R+ FPG
Sbjct: 14  QWFVIHTLSGHENKVRDKILRQLQT-GDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPG 72

Query: 64  YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           Y+ ++  +        +K ++ I+    V+GFLG    P+ +T+SE+E IM   +A    
Sbjct: 73  YIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVEDIMRPAQAGAPE 132

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               + FEVGE V + DG F +F G ++ +D E+ ++ + V IFGR TPVEL + QVE+ 
Sbjct: 133 VKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVERT 192

Query: 177 V 177
           V
Sbjct: 193 V 193


>gi|71066447|ref|YP_265174.1| transcription antitermination protein nusG [Psychrobacter arcticus
           273-4]
 gi|71039432|gb|AAZ19740.1| transcription antitermination protein nusG [Psychrobacter arcticus
           273-4]
          Length = 176

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWYIVQ +S  EK+   S+  R++RS       ++ +P+E VV ++ G+K  SER+FFP
Sbjct: 1   MRWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVLI+  M D  +H +KD P+++GF+G   E P+P+T+ E + I+N++      P    
Sbjct: 61  GYVLIQMEMNDNTWHIVKDCPRIMGFIGGTPETPAPITEVEADRILNRLNQTETDPRPKT 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE GE + V DGPF  F G+V+ VD EKS++H+ V +F R T VEL +++VEK+
Sbjct: 121 LFEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175


>gi|150025253|ref|YP_001296079.1| transcription antitermination protein NusG [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771794|emb|CAL43268.1| Transcription antitermination protein NusG [Flavobacterium
           psychrophilum JIP02/86]
          Length = 183

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K    I   ++R  L   V+++ +P+E+VV+V+ G+K+  ++ +F 
Sbjct: 7   KKWYVVRAVSGQENKVKAYIEAEINRLELSDYVSQVLVPTEKVVTVKDGKKIIKDKVYFS 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
           GYV+++A +  ++ H IK    VIGFLG     +P P+  +E+  ++ +V+  AV     
Sbjct: 67  GYVMVEANLAGEITHIIKSITSVIGFLGETKNGDPVPLRIAEVNRMLGKVDELAVTADHG 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ F VGE V V+DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 127 SIPFTVGETVKVTDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183


>gi|171741354|ref|ZP_02917161.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC
           27678]
 gi|283455289|ref|YP_003359853.1| putative transcription antitermination protein nusG
           [Bifidobacterium dentium Bd1]
 gi|171276968|gb|EDT44629.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC
           27678]
 gi|283101923|gb|ADB09029.1| putative transcription antitermination protein nusG
           [Bifidobacterium dentium Bd1]
          Length = 270

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  GL+  + +I +P E V    +  K    R   PG
Sbjct: 85  KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPG 144

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+ +  +     +++T  V GF+G  + P+P++  E+  +M  + A+          
Sbjct: 145 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 204

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPF +   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 205 AAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 264

Query: 172 QVEKI 176
           QVEK+
Sbjct: 265 QVEKL 269


>gi|288801076|ref|ZP_06406532.1| transcription termination/antitermination factor NusG [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332010|gb|EFC70492.1| transcription termination/antitermination factor NusG [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 181

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++  S  E K  E I   +  + L    V+++ IP E+  S+R G++V +E+   
Sbjct: 6   KNWYVLRAVSGKEAKVKEYIEAEIKHNTLLSSYVSQVLIPLEKHASLRNGKRVITEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV ++AV+   V HT++  P V+GFLG  +NPSPV  +EI  ++   E        ++
Sbjct: 66  PGYVFVEAVLKGDVAHTLRFIPNVLGFLGGLDNPSPVPQAEINRMLGTAEETEVADEINI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYEVNETVKVTDGPFSGFSGVIEEVNSEKHKLKVMVKIFGRKTPLELSFMQVEK 179


>gi|298490349|ref|YP_003720526.1| NusG antitermination factor ['Nostoc azollae' 0708]
 gi|298232267|gb|ADI63403.1| NusG antitermination factor ['Nostoc azollae' 0708]
          Length = 209

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK  ++  SE + 
Sbjct: 24  EARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPHTPTVKIRKDGKRQPSEEKV 83

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ ++ D  +  +++T  VI F+G  +                          +
Sbjct: 84  FPGYVLVRMMLNDDTWQVVRNTTHVINFVGAEQKRGTGKGRGHVKPVPLSNSEVERIFKQ 143

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
            + Q PV  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 144 TSEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203

Query: 172 QVEK 175
           QVEK
Sbjct: 204 QVEK 207


>gi|269121551|ref|YP_003309728.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386]
 gi|268615429|gb|ACZ09797.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386]
          Length = 198

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 15/190 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI+  YS  EKK    +  R+    L   V  I +P E ++  ++G+ V   R+ F
Sbjct: 9   EKKWYIIHTYSGYEKKVKADLEKRVVTLNLTDRVFRILVPEEEIMEEKRGKMVKVPRKLF 68

Query: 62  PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           PGYV+++               +    ++ I++T  V GF+G G +P P+ D E + +++
Sbjct: 69  PGYVMVEMLSKKEENDLGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLADDEAKSLLS 128

Query: 109 QV--EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           ++  + +   P + +  EVGE+V V +G F +    +  VD E  RV V V +FGR+TPV
Sbjct: 129 KIGLDESASAPKARLDLEVGEKVIVKNGAFENQEAEIAEVDHEHGRVKVMVEVFGRMTPV 188

Query: 167 ELAYNQVEKI 176
           EL Y++V KI
Sbjct: 189 ELEYHEVRKI 198


>gi|306823644|ref|ZP_07457019.1| transcription termination/antitermination factor NusG
           [Bifidobacterium dentium ATCC 27679]
 gi|304553351|gb|EFM41263.1| transcription termination/antitermination factor NusG
           [Bifidobacterium dentium ATCC 27679]
          Length = 270

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  GL+  + +I +P E V    +  K    R   PG
Sbjct: 85  KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPG 144

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+ +  +     +++T  V GF+G  + P+P++  E+  +M  + A+          
Sbjct: 145 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 204

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++    V + VG++V V+DGPF +   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 205 AAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 264

Query: 172 QVEKI 176
           QVEK+
Sbjct: 265 QVEKL 269


>gi|238916244|ref|YP_002929761.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC
           27750]
 gi|238871604|gb|ACR71314.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC
           27750]
          Length = 178

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 1/172 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I   +    L   + E+ +P E VV ++ G K  ++++ FPG
Sbjct: 5   KWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPG 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122
           YVL+K VM D  ++ +++T  V GF+G G  P P+T +EI+++   +E   + +PV    
Sbjct: 65  YVLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQFA 124

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +VG++V +  G +    G + N++E K  + + V +FGR TPVE+ +  V+
Sbjct: 125 GKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176


>gi|312130984|ref|YP_003998324.1| transcription antitermination protein nusg [Leadbetterella
           byssophila DSM 17132]
 gi|311907530|gb|ADQ17971.1| transcription antitermination protein nusG [Leadbetterella
           byssophila DSM 17132]
          Length = 184

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+V+  S  EKK    I    +R  L   + E+ IP+E+++ VR G+K   E+ FFPG
Sbjct: 5   NWYVVRAVSQQEKKIKNYIENEAARRKLTDFIPEVLIPTEKIIEVRNGKKRVREKNFFPG 64

Query: 64  YVLIKAVMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
           Y+L+ A + +    H IK  P VIGFLG     S   +   +  +N++      P     
Sbjct: 65  YILVNADLNNGEVLHLIKSIPGVIGFLGKNGGASIEPEPLRQSEVNRILGVQDAPQEEAI 124

Query: 121 ---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V F  GE V V DGPF  F G V+ + +EK ++ V V IFGR TPVEL Y QVEK+
Sbjct: 125 DAGVSFVTGETVKVIDGPFNGFEGTVEEIFDEKKKLSVSVKIFGRSTPVELGYLQVEKL 183


>gi|307691690|ref|ZP_07633927.1| NusG antitermination factor [Ruminococcaceae bacterium D16]
          Length = 174

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+V  YS  E     +I   +    L  ++ EI+IP E V  +        ER+ FPG
Sbjct: 6   NWYVVHTYSGYENTVKATIEKYVENRHLQDMIHEISIPLETVTEITDNGPKEVERKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K VM D+ +H +++   V GFLG G  P P+++ ++  +       V++    V +
Sbjct: 66  YVLVKMVMNDETWHVVRNIRGVTGFLGEGNKPIPLSEDDVASL------GVEKREVVVGY 119

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +VG+ V ++DG   SF G V+ +D E+ +V V V +FGR TPVEL  +QVE +
Sbjct: 120 QVGDSVKITDGALESFLGTVEELDLERGKVRVVVSMFGRETPVELELDQVEPM 172


>gi|212695317|ref|ZP_03303445.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855]
 gi|237711661|ref|ZP_04542142.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA]
 gi|237725897|ref|ZP_04556378.1| transcription anti-termination protein [Bacteroides sp. D4]
 gi|265753081|ref|ZP_06088650.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_33FAA]
 gi|212662227|gb|EEB22801.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855]
 gi|229435705|gb|EEO45782.1| transcription anti-termination protein [Bacteroides dorei
           5_1_36/D4]
 gi|229454356|gb|EEO60077.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA]
 gi|263236267|gb|EEZ21762.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_33FAA]
          Length = 180

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  ENP P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQESGEELN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL +  VEK
Sbjct: 125 VPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179


>gi|225351134|ref|ZP_03742157.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158590|gb|EEG71832.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 265

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  G++  + +I +P E V    +  K    R   PG
Sbjct: 80  KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 139

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+ +  +     +++T  V GF+G  + P+P++  E+  +M  + A+          
Sbjct: 140 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 199

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V + VG++V V+DGPF +   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 200 AANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 259

Query: 172 QVEKI 176
           QVEK+
Sbjct: 260 QVEKL 264


>gi|323342433|ref|ZP_08082665.1| transcription antitermination factor NusG [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463545|gb|EFY08739.1| transcription antitermination factor NusG [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 181

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E +  E++  R+   G++  +  I +  E+ +  + G+KV   R  F
Sbjct: 6   EKKWYVVNTYSGHENRVKENLERRVESMGIEDALFRILVAEEKEIEYKNGKKVEKLRNLF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGY+ ++ +MTD+ ++ +++TP V GF+   G G  P PV+D EIE I+ ++  + Q+  
Sbjct: 66  PGYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSDEEIESILRRMGMSDQK-- 123

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V F+ G+ V +  GPFA   G V +++ +     +  ++FGR TP E++Y  +E +
Sbjct: 124 LIVNFKEGDTVRILSGPFAGIEGTVDSMNNDSQTAMILTILFGRETPTEISYTDIEAL 181


>gi|299143702|ref|ZP_07036782.1| transcription termination/antitermination factor NusG
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518187|gb|EFI41926.1| transcription termination/antitermination factor NusG
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 176

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 5/174 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K   ++   +    ++ L+ +I +P E  V  ++G K   ER+ F
Sbjct: 7   EAKWYVIHTYSGHENKVKANMEAMVVNRNMEDLIFDIQVPIEEYVENKEGSKKVKERKLF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K +M D+ ++ +++T  V GF+G G  P P++D E+  +               
Sbjct: 67  PSYVLVKMIMNDESWYLVRNTRGVTGFVGPGSKPVPLSDEEVITLGVC-----DNKEIFG 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +EVGE V V  GPF  F G + + + EK ++ V V +FGR T VEL +NQV K
Sbjct: 122 EYEVGETVKVISGPFNDFVGKIDSCNYEKKKIKVSVSMFGRDTLVELDFNQVIK 175


>gi|257460973|ref|ZP_05626073.1| transcription termination/antitermination factor NusG
           [Campylobacter gracilis RM3268]
 gi|257441636|gb|EEV16779.1| transcription termination/antitermination factor NusG
           [Campylobacter gracilis RM3268]
          Length = 176

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E     +I        L+  + E+ +P+E V+ V+  ++   ER  
Sbjct: 1   MANKWYAIQTYAGSEMAVKRAIEALKQDEALEAKIGEVLVPTEDVIEVKNTKQTIKERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  PKV  F+G  + PS + + +IE I+ ++    + P   
Sbjct: 61  YPGYCFANLDLDTTLWHRIQMLPKVSRFIGEAKKPSALPEKDIEIILEKINNR-EAPKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + F+ GE V + DGPFA+FNGIV+  D    ++ + V IFGR TP+E++Y+QVEKI+
Sbjct: 120 INFDEGETVRIIDGPFANFNGIVEEYDMIHGKLRLNVSIFGRSTPIEISYSQVEKII 176


>gi|150003400|ref|YP_001298144.1| transcription anti-termination protein [Bacteroides vulgatus ATCC
           8482]
 gi|294777810|ref|ZP_06743254.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
 gi|319640312|ref|ZP_07995037.1| transcription antitermination protein nusG [Bacteroides sp.
           3_1_40A]
 gi|149931824|gb|ABR38522.1| transcription anti-termination protein [Bacteroides vulgatus ATCC
           8482]
 gi|294448264|gb|EFG16820.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
 gi|317388087|gb|EFV68941.1| transcription antitermination protein nusG [Bacteroides sp.
           3_1_40A]
          Length = 180

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  ENP P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEELN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL +  VEK
Sbjct: 125 VPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179


>gi|298206601|ref|YP_003714780.1| putative transcription antitermination protein [Croceibacter
           atlanticus HTCC2559]
 gi|83849231|gb|EAP87099.1| putative transcription antitermination protein [Croceibacter
           atlanticus HTCC2559]
          Length = 183

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 115/178 (64%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K  + I   +S  GL+  V +I +P+E+V+ +R G+KVN ER +F
Sbjct: 6   EKKWYVVRSVSGQENKIKDYIEREISHHGLEDFVDQILVPTEKVIQIRNGKKVNKERVYF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118
           PGY++++A ++ ++ H IK    VIGFLG   G +P P+  SE+  ++ +V+  +V    
Sbjct: 66  PGYIMVQANLSGEIPHIIKGINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELSVAADN 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ + VGE + V DGPF  FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 VAIPYTVGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183


>gi|218246573|ref|YP_002371944.1| transcription antitermination protein NusG [Cyanothece sp. PCC
           8801]
 gi|257059613|ref|YP_003137501.1| transcription antitermination protein NusG [Cyanothece sp. PCC
           8802]
 gi|218167051|gb|ACK65788.1| NusG antitermination factor [Cyanothece sp. PCC 8801]
 gi|256589779|gb|ACV00666.1| NusG antitermination factor [Cyanothece sp. PCC 8802]
          Length = 208

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 14/187 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRF 60
           T RWY VQV S CEK+   ++  R+    +   + ++ IP    + VRK       E + 
Sbjct: 23  TARWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPKTPTIKVRKDGSRQHGEEKV 82

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
           FPGYVL++ +M D  +  +K+TP VI F+G  +            P P++  EIE I  Q
Sbjct: 83  FPGYVLVRMIMDDDAWQVVKNTPHVINFVGAEQSRGTGRGRGHVRPVPLSPGEIERIFKQ 142

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
             + VQ PV  +   VG+++ V  GPF  F G V  V  E+ ++   + IFGR TPVEL 
Sbjct: 143 --SEVQEPVVKIDTMVGDKIMVLSGPFKDFEGEVVEVSPERGKLRALLSIFGRDTPVELE 200

Query: 170 YNQVEKI 176
           +NQ+EK+
Sbjct: 201 FNQIEKL 207


>gi|222529521|ref|YP_002573403.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725]
 gi|312622249|ref|YP_004023862.1| nusg antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456368|gb|ACM60630.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725]
 gi|312202716|gb|ADQ46043.1| NusG antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 174

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++   +    L   + +I IP+E V  ++ G+K+  E++ FP 
Sbjct: 7   KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIKAVM +++++TI++   V GF+G    P+P+TD EIE +        +  V     
Sbjct: 67  YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ V V  GPFA F G V  +++E+ +V V + +FGR TPVE  Y+QVE++
Sbjct: 122 EVGDNVKVVSGPFADFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174


>gi|254458743|ref|ZP_05072167.1| transcription termination/antitermination factor NusG
           [Campylobacterales bacterium GD 1]
 gi|207084509|gb|EDZ61797.1| transcription termination/antitermination factor NusG
           [Campylobacterales bacterium GD 1]
          Length = 175

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y   E+    +I   +   GL   ++E+ +P+E V+ V+ G+K  +ER  
Sbjct: 1   MAHQWYSIQTY-GSERAVRIAILNMIEEMGLQDFISEVIVPTEDVIEVKDGKKKITERSL 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + GYV     +  +V H I   PKV GF+G    P+P+++ +I  I+++V      P   
Sbjct: 60  YSGYVFANIDLNTEVQHLITALPKVSGFIGEANTPTPLSEHDINVILDRVNNRA-APKPK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V+F+ GE V + DGPFA+F   V   D E   + + V IFGR TPV+++Y QVEKI+
Sbjct: 119 VYFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175


>gi|312793745|ref|YP_004026668.1| nusg antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312876856|ref|ZP_07736833.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796371|gb|EFR12723.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180885|gb|ADQ41055.1| NusG antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 174

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++   +    L   + +I IP+E V  ++ G+K+  E++ FP 
Sbjct: 7   KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIKAVM +++++TI++   V GF+G    P+P+TD EIE +        +  V     
Sbjct: 67  YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ V V  GPF  F G V  ++ E+ +V V + +FGR TPVE  Y+QVE++
Sbjct: 122 EVGDNVKVVSGPFTDFYGPVVEINRERKKVKVMLNLFGRETPVEFDYHQVERL 174


>gi|25027042|ref|NP_737096.1| transcription antitermination protein NusG [Corynebacterium
           efficiens YS-314]
 gi|259508475|ref|ZP_05751375.1| transcription antitermination protein NusG [Corynebacterium
           efficiens YS-314]
 gi|23492322|dbj|BAC17296.1| putative transcription antitermination protein NusG
           [Corynebacterium efficiens YS-314]
 gi|259163939|gb|EEW48493.1| transcription antitermination protein NusG [Corynebacterium
           efficiens YS-314]
          Length = 287

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 22/194 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     ++  + E+ +P E+V  +R G++   +R+  PGY
Sbjct: 93  WYIIQCYSGYENKVKANLDMRAQTLEVEEDIYEVVVPIEQVTEIRDGKRKLVKRKLLPGY 152

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108
           VL++  M D+V+  ++DTP V  F+G   N + V   ++   +                 
Sbjct: 153 VLVRMEMNDRVWSVVRDTPGVTSFVGNEGNATAVKHRDVAKFLMPQESAVVAGEAAPTTA 212

Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                  +         +V F+VGE V +  G FAS +  + ++D E  ++   V IFGR
Sbjct: 213 EGEQVVAMPTDSAAQQVTVDFQVGEAVTILTGAFASVSATISSIDVENQKLEALVSIFGR 272

Query: 163 VTPVELAYNQVEKI 176
            TPV+L ++QVEKI
Sbjct: 273 ETPVDLKFDQVEKI 286


>gi|227825215|ref|ZP_03990047.1| NusG antitermination factor [Acidaminococcus sp. D21]
 gi|226905714|gb|EEH91632.1| NusG antitermination factor [Acidaminococcus sp. D21]
          Length = 185

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY++  YS  E K   ++  ++   G++ ++ ++ +P +  +  +  ++    R+ FPG
Sbjct: 6   HWYVIHTYSGYENKVKLNLESKVHSLGMEDMIFQVLVPMQDELETKDDQQKVVSRKVFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------ 117
           YVLI+ ++ D+ ++ +++TP V GF+GTG  P P++  E+  I+ +     +        
Sbjct: 66  YVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSPREVARILGKQSTGKKEASVEAPI 125

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                 E+ + V +    F    G V  + +E+ +V V + +FGRVTPVE+ ++QVE I
Sbjct: 126 RMKCPVELDQTVRIKAPGFNDMVGTVAEISDEQQKVKVMIEMFGRVTPVEVNFSQVEAI 184


>gi|325283114|ref|YP_004255655.1| NusG antitermination factor [Deinococcus proteolyticus MRP]
 gi|324314923|gb|ADY26038.1| NusG antitermination factor [Deinococcus proteolyticus MRP]
          Length = 189

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKG-RKVNSER 58
           M+  WY V  Y   E +  + +  R  + G+    + ++  PSE+ V +R G +K   ER
Sbjct: 1   MSIEWYAVHTYIGQEDRVQQHLLERARKLGMLGTKIFQVLQPSEQAVELRDGGKKETVER 60

Query: 59  RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           + FPGYV ++  + D          +  +++T  V GF+GT   P P++  E++ ++  V
Sbjct: 61  KLFPGYVFVQMDIEDDDAPGELGESWEVVRNTNGVTGFVGTATYPVPLSPDEVQRLLASV 120

Query: 111 ----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  V+ P   V  + G+ V V  GPFA FNG+V  V+  +++V V V IFGR TPV
Sbjct: 121 GVGTVPKVEAPKVQVDLKPGDMVKVKSGPFADFNGVVSEVNAAQAKVKVLVSIFGRETPV 180

Query: 167 ELAYNQVEK 175
           EL + QV K
Sbjct: 181 ELDFAQVSK 189


>gi|284047641|ref|YP_003397980.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731]
 gi|283951862|gb|ADB46665.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731]
          Length = 191

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 12/186 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++  YS  E K   ++  ++   G++  + ++ +P +  V  +  ++    R+ FP
Sbjct: 5   KHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA--------- 113
           GYVLI+ ++ D+ ++ +++TP V GF+GTG  P P++D E+E I+               
Sbjct: 65  GYVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSDREVERILGAQPKEGDKAEAAGK 124

Query: 114 -VQRPVSSVFFEVG--ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
            V+ PV  +   VG  + V +    F    G V  +++E+ ++ V V +FGR TP+E+ +
Sbjct: 125 AVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEVKF 184

Query: 171 NQVEKI 176
            QVE I
Sbjct: 185 TQVEAI 190


>gi|224023595|ref|ZP_03641961.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM
           18228]
 gi|224016817|gb|EEF74829.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM
           18228]
          Length = 180

 Score =  150 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+   VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYLEAEMRHSDLGEYVSQVLIPTEKTYQVRNGKKIVKERTYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++   VIGFLG  ++P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLVEAALVGEVAHQLRNITNVIGFLGGQDHPVPLRQSEVNRILGTVDELQEIGEDLN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V VS GPF+ F+G+++ V  EK ++ V V IFGR TP+EL +  VEK
Sbjct: 125 IPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179


>gi|260905750|ref|ZP_05914072.1| transcription termination/antitermination factor [Brevibacterium
           linens BL2]
          Length = 302

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +  +++  R     L+  + E  +P E VV ++ G++    R   PGY
Sbjct: 114 WYVIHSYAGYENRVKQNLENRAISLNLEEFIFESQVPMEDVVEIKNGQRKQVRRVRIPGY 173

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           VL++  +TD+ +  ++ TP V GF+G   +P+P++  E+  ++  +    Q         
Sbjct: 174 VLVRMELTDESWGAVRHTPGVTGFVGNAYDPTPLSIDEVFTMLAPIFEERQAEAAAAEGV 233

Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                    P++ V +EVGE V V +G F      ++ +  E  ++ V + IF R  PVE
Sbjct: 234 QAEQAAKSAPITEVEYEVGESVLVKEGSFEGHPATIQEIRPESQKLTVLLSIFERDVPVE 293

Query: 168 LAYNQVEKI 176
           L+++QV K+
Sbjct: 294 LSFDQVSKL 302


>gi|225569799|ref|ZP_03778824.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM
           15053]
 gi|225161269|gb|EEG73888.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM
           15053]
          Length = 171

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G +  ++++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKATQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+TD+E+  +  +      +    V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIR------QENIVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ V V  G +A   G+++ ++  K  + + V +FGR TPVE+++ +V+K+
Sbjct: 117 DFEVGDTVQVIAGAWADTVGVIQALNIPKQSLTINVELFGRETPVEISFAEVKKM 171


>gi|154175492|ref|YP_001408646.1| transcription antitermination protein NusG [Campylobacter curvus
           525.92]
 gi|112803934|gb|EAU01278.1| transcription termination/antitermination factor NusG
           [Campylobacter curvus 525.92]
          Length = 176

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E      I   +   G++  + E+ +P+E V+ ++ G++  +ER  
Sbjct: 1   MAHKWYAIQTYAGSEMAVKRGIENLVKDHGIEEQLKEVIVPTEDVIEIKNGKQKINERTL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  PKV  F+G  + P+P++D +I  I+ +V+     P   
Sbjct: 61  YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINTILEKVQKRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +FF+ GE V +++GPFA+F GIV+  D    ++ + V IFGR TPV++ Y+QVEKI+
Sbjct: 120 IFFDEGESVRITEGPFANFTGIVEEYDMVHGKLRLNVSIFGRSTPVDILYSQVEKII 176


>gi|218438014|ref|YP_002376343.1| transcription antitermination protein NusG [Cyanothece sp. PCC
           7424]
 gi|218170742|gb|ACK69475.1| NusG antitermination factor [Cyanothece sp. PCC 7424]
          Length = 213

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62
           RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK       E + FP
Sbjct: 30  RWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPQTPTVKIRKDGSRQHGEEKVFP 89

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEAA 113
           GYVL++ +M D  +  +K+TP VI F+G  +                          +A 
Sbjct: 90  GYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSSSEVERIFRQAQ 149

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            Q PV  V  EVG+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +NQ+
Sbjct: 150 GQEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEFNQI 209

Query: 174 EK 175
           EK
Sbjct: 210 EK 211


>gi|312127420|ref|YP_003992294.1| nusg antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777439|gb|ADQ06925.1| NusG antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
          Length = 174

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++   +    L   + +I IP+E V  ++ G+K+  E++ FP 
Sbjct: 7   KWYVVHTYAGYENKVKANLEKIIENRNLADRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIKAVM +++++TI++   V GF+G    P+P+TD EIE +        +  V     
Sbjct: 67  YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEIFDI 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ V V  GPF  F G V  +++E+ +V V + +FGR TPVE  Y+QVE++
Sbjct: 122 EVGDNVKVVSGPFTDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174


>gi|295107783|emb|CBL21736.1| transcription antitermination protein nusG [Ruminococcus obeum
           A2-162]
          Length = 171

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 6/174 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV +R G     +++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G  P P+T+ E+      +   ++     V
Sbjct: 63  PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKAEDIQV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F  G+ V V+ G +    G++  ++ +K  V + V +FGR TPVE+++ +++K
Sbjct: 117 DFAEGDMVVVTGGAWKDTAGVITAINTQKQTVTINVELFGRETPVEISFAEIKK 170


>gi|261880900|ref|ZP_06007327.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
 gi|270332408|gb|EFA43194.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
          Length = 182

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 103/175 (58%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++V S  E K  E I   +  S  L   V+++ IP E+ V++R G++V  ++   
Sbjct: 6   KNWYVLRVVSGKEAKVKEYIEAEMKHSTQLADHVSQVLIPMEKHVAIRNGKRVEKDKTSM 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ ++A +   V   ++  P  +GF+G  +NPSPV  S+I  ++   E +      S+
Sbjct: 66  PGYIFVEAELNGDVAAALRFMPNCLGFIGGLDNPSPVPQSQINRMLGAAEESDMDNEVSI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + + E V V DGPF+ F GI++ V+ EK ++ V V IFGR TP+EL++ QVEK+
Sbjct: 126 PYVLDETVKVVDGPFSGFEGIIEEVNTEKRKLKVMVKIFGRKTPLELSFMQVEKV 180


>gi|75908765|ref|YP_323061.1| transcription antitermination protein NusG [Anabaena variabilis
           ATCC 29413]
 gi|75702490|gb|ABA22166.1| transcription antitermination protein nusG [Anabaena variabilis
           ATCC 29413]
          Length = 210

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK   + ++E + 
Sbjct: 25  EARWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKV 84

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ VM D  +  +++T  VI F+G  +                          +
Sbjct: 85  FPGYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQ 144

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q P+  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 145 TTEQEPIVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 204

Query: 172 QVEK 175
           QVEK
Sbjct: 205 QVEK 208


>gi|305664391|ref|YP_003860678.1| putative transcription antitermination protein [Maribacter sp.
           HTCC2170]
 gi|88708408|gb|EAR00644.1| putative transcription antitermination protein [Maribacter sp.
           HTCC2170]
          Length = 183

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/178 (39%), Positives = 111/178 (62%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K    I   ++R G    + ++ +P+E+V+ +R G+K+N ER +F
Sbjct: 6   EKKWYVVRAVSGQENKIKGYIESEVTRLGFSDYLEDVLVPTEKVIQIRNGKKINKERVYF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118
           PGY++IKA +  ++ H I+    VIGFLG   G +P P+  +E+  ++ +V+  AV    
Sbjct: 66  PGYIMIKANLGGEMIHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELAVNTDS 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F  GE V V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 IAIPFVHGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183


>gi|189499294|ref|YP_001958764.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
 gi|189494735|gb|ACE03283.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
          Length = 193

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 104/174 (59%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY +++YS  E+K  E I   + R  L+  + ++ +P E+ V VR G+K +  +  FP
Sbjct: 18  PRWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLI+A++  +  + I D P V+GFLG  + P+P+   E+E I+       QR V    
Sbjct: 78  GYVLIEAILDKQTKNLIMDIPSVMGFLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAP 137

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F VG+ V V DGPF+S  G+V +V  E+ +V V +  FGR TP EL ++QV+ I
Sbjct: 138 FRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVKSI 191


>gi|254412797|ref|ZP_05026570.1| transcription termination/antitermination factor NusG [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180532|gb|EDX75523.1| transcription termination/antitermination factor NusG [Microcoleus
           chthonoplastes PCC 7420]
          Length = 205

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
           + RWY VQV S CEK+   ++  R+    +   +  + IP    V +RK   + +SE + 
Sbjct: 20  SARWYAVQVASGCEKRVKTNLEQRVQTLDVADRILRVQIPQTPTVKIRKDGSRQHSEEKV 79

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ VM D+ +  +K+TP VI F+G  +                           
Sbjct: 80  FPGYVLVEMVMDDESWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSPGEVERIFKH 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q PV  V   VG+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 140 TEEQEPVIKVDMAVGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 199

Query: 172 QVEK 175
           QVEK
Sbjct: 200 QVEK 203


>gi|283798907|ref|ZP_06348060.1| transcription termination/antitermination factor NusG [Clostridium
           sp. M62/1]
 gi|291073370|gb|EFE10734.1| transcription termination/antitermination factor NusG [Clostridium
           sp. M62/1]
 gi|295092664|emb|CBK78771.1| transcription antitermination protein nusG [Clostridium cf.
           saccharolyticum K10]
          Length = 171

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +   GL   + E+++P + VV ++ G +    ++ F
Sbjct: 3   EANWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPMQDVVEIKNGAQKQVAKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T+ E+ ++  +    V      V
Sbjct: 63  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMANLGFKPAGVV------V 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E+G+ V V  G +    G++K+++E K  + + V +FGR TPVEL + +V+K+
Sbjct: 117 DYEIGDAVVVISGAWKDTVGVIKSINENKQTLEITVEMFGRETPVELNFTEVKKM 171


>gi|17232791|ref|NP_489339.1| transcription antitermination protein NusG [Nostoc sp. PCC 7120]
 gi|17134438|dbj|BAB76998.1| transcription antitermination protein [Nostoc sp. PCC 7120]
          Length = 210

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK   + ++E + 
Sbjct: 25  EARWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKV 84

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ VM D  +  +++T  VI F+G  +                          +
Sbjct: 85  FPGYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQ 144

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q PV  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 145 TTEQEPVVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 204

Query: 172 QVEK 175
           QVEK
Sbjct: 205 QVEK 208


>gi|260063562|ref|YP_003196642.1| putative transcription antitermination protein [Robiginitalea
           biformata HTCC2501]
 gi|88783006|gb|EAR14180.1| putative transcription antitermination protein [Robiginitalea
           biformata HTCC2501]
          Length = 183

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K    I   + R G    + E+ +P+E+VV +R G+K+N ER +F
Sbjct: 6   EKKWYVVRAVSGQENKIKGYIESEVERHGFGDNLEEVLVPTEKVVQIRNGKKINKERVYF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV-QRPV 118
           PGY+++KA +T ++ H I+    VIGFLG   G +P P+  SE+  ++ +V+        
Sbjct: 66  PGYIMVKANLTGEMIHIIRSITNVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAINTDA 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F +GE V V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 VAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183


>gi|315639708|ref|ZP_07894847.1| transcription antitermination protein NusG [Enterococcus italicus
           DSM 15952]
 gi|315484485|gb|EFU74942.1| transcription antitermination protein NusG [Enterococcus italicus
           DSM 15952]
          Length = 214

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   +I  R     +   +  + +P E    V+ G++     + F
Sbjct: 39  EKSWYVLHTYSGYENKVKTNIESRAQSMRMGDYIFRVVVPEEVEKEVKNGKEKEIVHKTF 98

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   EI  I+  +  + +   
Sbjct: 99  PGYVLVEMIMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSLGMSTRTVE 158

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V    G+ V + +G F+   G V  +DEE+ ++ V + +FGR T  EL ++QV+ I
Sbjct: 159 LKVAL--GQTVKIIEGAFSGLEGQVTEIDEERQKLKVNIDMFGRETSTELDFDQVDDI 214


>gi|310659520|ref|YP_003937241.1| transcription termination factor [Clostridium sticklandii DSM 519]
 gi|308826298|emb|CBH22336.1| transcription termination factor [Clostridium sticklandii]
          Length = 180

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 103/182 (56%), Gaps = 9/182 (4%)

Query: 1   MTP------RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
           M+       +WY++  YS  E K   +I   ++  G++ L+ ++ +P E VV  + G++ 
Sbjct: 1   MSMSEQEQAKWYVIHTYSGHENKVKATIEKAVANRGMEDLIQDVAVPVEDVVENKNGKEK 60

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
             +R+ FPGYVLIK ++TD+ ++ +++T  V GF+G    P  +T  E+E   N      
Sbjct: 61  IRQRKVFPGYVLIKMIVTDESWYVVRNTKGVTGFVGPNSKPVALTAEEVE---NMGVEKQ 117

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +     V F +G+++ VS GPF  F G ++ ++ +K    V + +FGR TPVEL + QV+
Sbjct: 118 KSFDLVVDFSIGDKIQVSGGPFDGFAGTIEEINHDKKHAKVNISMFGRETPVELEFYQVK 177

Query: 175 KI 176
           K+
Sbjct: 178 KV 179


>gi|302871673|ref|YP_003840309.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47]
 gi|302574532|gb|ADL42323.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47]
          Length = 174

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y+  E K   ++   +    L   + +I IP+E V  ++ G+K+  E++ FP 
Sbjct: 7   KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIKAVM +++++TI++   V GF+G    P+P+TD EIE +        +  V     
Sbjct: 67  YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ V +  GPF  F G V  +++E+ +V V + +FGR TPVE  Y+QVE++
Sbjct: 122 EVGDNVKIVSGPFTDFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174


>gi|167772354|ref|ZP_02444407.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM
           17241]
 gi|167665457|gb|EDS09587.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM
           17241]
          Length = 174

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 6/173 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+V  YS  E K   +I   +    L  L  E+ +P++ V  ++  +K   ER+ F
Sbjct: 5   AMRWYVVHTYSGYENKVATNIEKAVENRKLHDLFGEVKVPTQTVTEIKDNKKREVERKIF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K +MTD  ++ +++   V GF+G G  P P+T+ E++ +       V++    V
Sbjct: 65  PGYVLVKMIMTDDSWYVVRNIRGVTGFVGPGSKPVPLTEEEVQRL------GVEQRNIEV 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            F VG+ V VS G    F G V  +D + + V V V + G+  PVEL  +QVE
Sbjct: 119 NFAVGDSVRVSGGYLEGFIGTVDEIDLQDALVRVTVSMMGKDVPVELELDQVE 171


>gi|291561991|emb|CBL40802.1| transcription antitermination protein nusG [butyrate-producing
           bacterium SS3/4]
          Length = 171

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K    I   +   GL   + E+++P E V+ ++ G +   ER+ F
Sbjct: 3   EAQWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPLEEVIELKNGAQKQVERKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+++ E+      +    + P   V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLSEEEM------MSLGFKAPDVVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F VG+ V V+ G +    G+++ V+E K  + + V +FGR TPVEL++++++K+
Sbjct: 117 DFAVGDTVVVTAGAWKDTVGVIRTVNESKQSITINVEMFGRETPVELSFSEIKKM 171


>gi|254881310|ref|ZP_05254020.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA]
 gi|254834103|gb|EET14412.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA]
          Length = 183

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 8   EKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYL 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++TP VIGFLG  ENP P+  SE+  I+  V+   +     +
Sbjct: 68  PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEELN 127

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL +  VEK
Sbjct: 128 VPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 182


>gi|167043576|gb|ABZ08271.1| putative transcription termination factor nusG [uncultured marine
           microorganism HF4000_APKG2K17]
          Length = 272

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E +  ++I  +L   G++HLV EI IPSE ++  ++G+K    +++FPG
Sbjct: 97  KWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQKYFPG 156

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVLI   +T +++H + +  +V GF+G   + P P+ + E+E I +QV    Q+  +   
Sbjct: 157 YVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQKATEDE 216

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + VG++V +++G F +F+G +  V+ E+ ++ V V IFGR TPVE+ +  V+ +V
Sbjct: 217 YSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVKHVV 271


>gi|34556887|ref|NP_906702.1| transcription antitermination protein NusG [Wolinella succinogenes
           DSM 1740]
 gi|34482602|emb|CAE09602.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Wolinella succinogenes]
          Length = 176

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY +Q YS  E+    +I   +  + ++  + +I +P+E ++ V+  +K  +ER  
Sbjct: 1   MSFDWYAIQTYSGSEQSVKRAIENLIRENKIEDRLEQIVVPTEDIIEVKNNKKKITERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV IK  +  +++H I+  P+V  F+G  + P+P+++++I  I+ +V+     P   
Sbjct: 61  YPGYVFIKVSLDTELWHLIQSLPRVGRFIGEAKKPTPLSEADINTILEKVKNRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V FE GE V +++GPFA+F G V+  D E  ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 VSFEAGEVVRITEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176


>gi|163839736|ref|YP_001624141.1| transcription termination/antitermination factor [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953212|gb|ABY22727.1| transcription termination/antitermination factor [Renibacterium
           salmoninarum ATCC 33209]
          Length = 264

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + EI +P E VV ++  ++    R   PGY
Sbjct: 80  WYVIHSYAGYENRVKANLETRAQSLNMEEHIFEIQVPMEEVVEIKNAQRKVVNRVRIPGY 139

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           VL++  +TD  +  ++ TP V GF+G   NP P+   E+  ++  V    Q         
Sbjct: 140 VLVRMELTDASWGVVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEDEQAAESGKGSA 199

Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               +   +V FE+GE V V +GPF +    +  +  E   + V V +F R TPV L+++
Sbjct: 200 TKAAQAPIAVDFEIGESVIVKEGPFETLPATISEIKPESQTLVVLVSLFERETPVTLSFS 259

Query: 172 QVEKI 176
           QV KI
Sbjct: 260 QVTKI 264


>gi|255971873|ref|ZP_05422459.1| transcription antitermination protein NusG [Enterococcus faecalis
           T1]
 gi|255974868|ref|ZP_05425454.1| transcription antitermination protein NusG [Enterococcus faecalis
           T2]
 gi|256616771|ref|ZP_05473617.1| transcription antitermination protein NusG [Enterococcus faecalis
           ATCC 4200]
 gi|256957955|ref|ZP_05562126.1| transcription antitermination protein NusG [Enterococcus faecalis
           DS5]
 gi|256961025|ref|ZP_05565196.1| transcription antitermination protein NusG [Enterococcus faecalis
           Merz96]
 gi|256963833|ref|ZP_05568004.1| transcription antitermination protein NusG [Enterococcus faecalis
           HIP11704]
 gi|257079893|ref|ZP_05574254.1| transcription antitermination protein NusG [Enterococcus faecalis
           JH1]
 gi|257081708|ref|ZP_05576069.1| transcription antitermination protein NusG [Enterococcus faecalis
           E1Sol]
 gi|257084305|ref|ZP_05578666.1| transcription antitermination protein NusG [Enterococcus faecalis
           Fly1]
 gi|257087696|ref|ZP_05582057.1| transcription antitermination protein NusG [Enterococcus faecalis
           D6]
 gi|257090914|ref|ZP_05585275.1| transcriptional antitermination protein nusG [Enterococcus faecalis
           CH188]
 gi|257416898|ref|ZP_05593892.1| transcription antitermination protein NusG [Enterococcus faecalis
           AR01/DG]
 gi|257420120|ref|ZP_05597114.1| transcription antitermination protein nusG [Enterococcus faecalis
           T11]
 gi|257421659|ref|ZP_05598649.1| transcription antitermination protein nusG [Enterococcus faecalis
           X98]
 gi|255962891|gb|EET95367.1| transcription antitermination protein NusG [Enterococcus faecalis
           T1]
 gi|255967740|gb|EET98362.1| transcription antitermination protein NusG [Enterococcus faecalis
           T2]
 gi|256596298|gb|EEU15474.1| transcription antitermination protein NusG [Enterococcus faecalis
           ATCC 4200]
 gi|256948451|gb|EEU65083.1| transcription antitermination protein NusG [Enterococcus faecalis
           DS5]
 gi|256951521|gb|EEU68153.1| transcription antitermination protein NusG [Enterococcus faecalis
           Merz96]
 gi|256954329|gb|EEU70961.1| transcription antitermination protein NusG [Enterococcus faecalis
           HIP11704]
 gi|256987923|gb|EEU75225.1| transcription antitermination protein NusG [Enterococcus faecalis
           JH1]
 gi|256989738|gb|EEU77040.1| transcription antitermination protein NusG [Enterococcus faecalis
           E1Sol]
 gi|256992335|gb|EEU79637.1| transcription antitermination protein NusG [Enterococcus faecalis
           Fly1]
 gi|256995726|gb|EEU83028.1| transcription antitermination protein NusG [Enterococcus faecalis
           D6]
 gi|256999726|gb|EEU86246.1| transcriptional antitermination protein nusG [Enterococcus faecalis
           CH188]
 gi|257158726|gb|EEU88686.1| transcription antitermination protein NusG [Enterococcus faecalis
           ARO1/DG]
 gi|257161948|gb|EEU91908.1| transcription antitermination protein nusG [Enterococcus faecalis
           T11]
 gi|257163483|gb|EEU93443.1| transcription antitermination protein nusG [Enterococcus faecalis
           X98]
          Length = 171

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 5/171 (2%)

Query: 9   QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
             YS  E K   +I  R    G+   +  + +P E    V+ G++     + FPGYVL++
Sbjct: 2   HTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGYVLVE 61

Query: 69  AVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            +MTD  ++ +++TP V GF+G+   G  P+P+   EI HI+  +  + ++    V    
Sbjct: 62  MIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSDLEVAL-- 119

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G+ V + +G F+   G+V  +DEEK ++ V + +FGR T  EL + QV+ I
Sbjct: 120 GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 170


>gi|154503736|ref|ZP_02040796.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149]
 gi|153795836|gb|EDN78256.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149]
          Length = 172

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 7/177 (3%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G +  S+++
Sbjct: 1   MSDAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVVELKNGVQKASQKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVLI  +M D  ++ +++T  V GF+G G  P P+ + E+ ++       +++   
Sbjct: 61  MFPGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMANL------GIKQEDI 114

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG+ V V  G +    G+++ ++E+K  + + V +FGR TPVEL +++V K+
Sbjct: 115 VVDFEVGDTVTVLSGAWEGTVGMIQAINEQKQSLSINVELFGRETPVELNFSEVRKM 171


>gi|323486268|ref|ZP_08091595.1| transcription antitermination protein nusG [Clostridium symbiosum
           WAL-14163]
 gi|323693941|ref|ZP_08108127.1| transcription antitermination protein nusG [Clostridium symbiosum
           WAL-14673]
 gi|323400413|gb|EGA92784.1| transcription antitermination protein nusG [Clostridium symbiosum
           WAL-14163]
 gi|323501987|gb|EGB17863.1| transcription antitermination protein nusG [Clostridium symbiosum
           WAL-14673]
          Length = 171

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+++P + V+ ++ G +    ++ F
Sbjct: 3   EANWYVVHTYSGYENKVKVDIEKTIENRKLQDQILEVSVPMQDVIELKNGAQKQVAKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T++E++ +  +           V
Sbjct: 63  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMDALGFR------EAGLVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G+ V V+ G +    G++K+++E K  + + V +FGR TPVEL + +V+K+
Sbjct: 117 EFEEGDTVVVTAGAWKDTVGVIKSINEGKQTLTINVEMFGRETPVELNFTEVKKM 171


>gi|291458135|ref|ZP_06597525.1| transcription termination/antitermination factor NusG [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291419218|gb|EFE92937.1| transcription termination/antitermination factor NusG [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 176

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+   YS  E K    +   +   GL  L+ E+++P + V+ ++ G +  ++++ F
Sbjct: 7   EARWYVAHTYSGYENKVKMDLEKTIENRGLQDLILEVSVPMQPVIEMKNGVEKKTDKKMF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D+ ++ +++T  V GF+G G  P P+++ EI  +  +    +      V
Sbjct: 67  PGYVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEIRILGYRESEIL------V 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F +G+ V V+ G +    G++  ++E+K  V + V +FGR TPVEL+Y +++K+
Sbjct: 121 DFALGDTVNVTSGAWKDTIGVITEINEQKRTVTINVEMFGRDTPVELSYGEIQKL 175


>gi|227510708|ref|ZP_03940757.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513723|ref|ZP_03943772.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC
           11577]
 gi|227083042|gb|EEI18354.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC
           11577]
 gi|227189829|gb|EEI69896.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 183

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 6/176 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60
             +WY++  YS  E K   ++  R    G+  L+  + +P      V K  K   +    
Sbjct: 6   EKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRVVVPETEEHEVDKKGKDKVKMDKT 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E++ ++ ++  + +  
Sbjct: 66  FPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHE 125

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              V   VG+ V + DG F   NG V  +D EK R+ V + +FGR T  EL +NQV
Sbjct: 126 DLDVN--VGDSVKIVDGAFTGLNGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQV 179


>gi|169350901|ref|ZP_02867839.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552]
 gi|169292487|gb|EDS74620.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552]
          Length = 185

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 5/176 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K  E++  R+   GL  ++ +I IP      ++ G+K+   +  FPG
Sbjct: 10  QWYVVNTYSGHENKVKENLEKRIESMGLQDVLFQIVIPEHVETEIKDGKKITKTKNMFPG 69

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           YVL++ +MTD+ ++ +++T  V GF+   G G  P P+  SE++ I+ ++  +  +    
Sbjct: 70  YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILEKMGLSSTKV--E 127

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V F+ G+ V V DGPF    G V+++D EK    V V   G +T V++   Q++K+
Sbjct: 128 VDFQEGDEVDVIDGPFVGKRGKVESIDTEKEIAKVLVDFLGNLTQVDIELTQLKKV 183


>gi|315605093|ref|ZP_07880145.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313200|gb|EFU61265.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 264

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+P  WY++  YS  E+K   ++  R++   ++  +  + +P E V+  R   K      
Sbjct: 76  MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGTAKKRVRHV 135

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
             PGY ++     +  Y  +K+TP V GF+G   NP P++  E+  ++            
Sbjct: 136 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAV 195

Query: 120 S----------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                        +EVGE V V DGPF + +  +  +  E  ++ V V IF R TP+EL 
Sbjct: 196 KDQPAPVQAVQTQYEVGEIVTVIDGPFETMSATISEIMPETQKLKVLVTIFERETPLELG 255

Query: 170 YNQVEKI 176
           ++QVEK+
Sbjct: 256 FDQVEKL 262


>gi|153813451|ref|ZP_01966119.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174]
 gi|149830472|gb|EDM85564.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174]
          Length = 171

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 6/174 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV +R G     +++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G  P P+T+ E+      +   ++     V
Sbjct: 63  PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKNDDIQV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F  G+ V V+ G +    G++  +  +K  V + V +FGR TPVE+++  ++K
Sbjct: 117 DFAEGDMVVVTAGAWKDTAGVITAISTQKQTVTINVELFGRETPVEISFADIKK 170


>gi|326693428|ref|ZP_08230433.1| transcription termination/antitermination factor NusG [Leuconostoc
           argentinum KCTC 3773]
          Length = 208

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++V  YS  E K   ++  R    G+   +  I +P + V + + G    S    F
Sbjct: 22  EKSWFVVHTYSGYEHKVKANLESRTQTMGMTEQIFRILVPEQEVTTFQDGEAKTSVENDF 81

Query: 62  PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112
           PGYVL++        MTD+ ++ +++TP V GFLG+   G  P+ +   E++ +M ++  
Sbjct: 82  PGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRM-G 140

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V R V  +  EVG+ V +  GPFA   G V +VD EK  +   V +FGR TP EL +  
Sbjct: 141 MVTREVVDLDVEVGQIVKIIAGPFAGMEGTVVSVDAEKQTLEATVEVFGRETPTELDFAD 200

Query: 173 VEKIV 177
           V+ ++
Sbjct: 201 VDTVL 205


>gi|319953894|ref|YP_004165161.1| transcription antitermination protein nusg [Cellulophaga algicola
           DSM 14237]
 gi|319422554|gb|ADV49663.1| transcription antitermination protein nusG [Cellulophaga algicola
           DSM 14237]
          Length = 183

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/177 (41%), Positives = 111/177 (62%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K    I   ++R G    + E+ +P+E+V+ VR G+KVN ER +FP
Sbjct: 7   KKWYVVRAVSGQENKIKGYIESEVARLGFGDYLDEVLVPTEKVIQVRNGKKVNKERVYFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
           GY+++KA +  +V H I+    VIGFLG   G +P P+  +E+  ++ +V+   V     
Sbjct: 67  GYIMVKANLGGEVAHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELTVTTENV 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ F +GE V V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 127 AIPFVMGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183


>gi|167749970|ref|ZP_02422097.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702]
 gi|167656991|gb|EDS01121.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702]
 gi|291530535|emb|CBK96120.1| transcription antitermination protein nusG [Eubacterium siraeum
           70/3]
 gi|291557875|emb|CBL34992.1| transcription antitermination protein nusG [Eubacterium siraeum
           V10Sc8a]
          Length = 173

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI+  YS  E K   +I   +  + L HL+ E+ +P+E VV    G+    E + F
Sbjct: 3   EAKWYILHTYSGYENKVAGNIMKVVENNNLHHLIEEVMVPTETVVEEHDGKTKTYESKLF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YV +K ++TD+ ++  ++T    GF+G G  P P+TD E++++       V   V+ +
Sbjct: 63  PSYVYVKMILTDESWYICRNTRGCTGFVGPGSKPIPLTDEEVKNL------GVTTKVAEI 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F VG+ + +  G    F G V ++DEE     V V +FGR TP  +  + V+K+
Sbjct: 117 SFAVGDTIKIVSGSLEGFEGTVDSIDEENGTAQVTVSMFGRPTPATVEISAVQKV 171


>gi|212716698|ref|ZP_03324826.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660402|gb|EEB20977.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM
           16992]
          Length = 269

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  EK+   ++  R++  G++  + +I +P E V    +  K    R   PG
Sbjct: 84  KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 143

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114
           YVLI+ +  +     +++T  V GF+G  ++P+P++  E+  +M  + A+          
Sbjct: 144 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDKP 203

Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V + VG++V V+DGPF +   +V +V+    ++ V V IFGR TPVEL +N
Sbjct: 204 AANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 263

Query: 172 QVEKI 176
           QVEK+
Sbjct: 264 QVEKL 268


>gi|116617397|ref|YP_817768.1| transcription antitermination protein nusG [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227431256|ref|ZP_03913310.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|116096244|gb|ABJ61395.1| transcription antitermination protein nusG [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227353018|gb|EEJ43190.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 192

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 8/180 (4%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++V  YS  E K   ++  R    G+   +  I +P + V +++ G    +    F
Sbjct: 6   EKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKQTVENDF 65

Query: 62  PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAA 113
           PGYVL++        MTD+ ++ +++TP V GFLG+    S       E   ++ +    
Sbjct: 66  PGYVLVEMATPYEDNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMGM 125

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           V R    +   VG+ V +  GPF+   G+V ++D+EK  +   V +FGR TP EL ++ V
Sbjct: 126 VTREQVDLDVAVGQTVKIISGPFSGMEGVVTSIDQEKQTLEATVAVFGRETPTELDFSDV 185


>gi|312892230|ref|ZP_07751727.1| transcription antitermination protein nusG [Mucilaginibacter
           paludis DSM 18603]
 gi|311295360|gb|EFQ72532.1| transcription antitermination protein nusG [Mucilaginibacter
           paludis DSM 18603]
          Length = 180

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  S  EKK  + I   ++R G+ HLV ++ IP E+   +R G+K+  ER FFPG
Sbjct: 6   KWYVVRAISGKEKKVKQYIDAEINRLGISHLVPQVLIPMEKYYQMRDGKKIAKERNFFPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           YVL++A +  ++ H IK+   VIGFLG    N  P+  +E+  I+ +V+   ++    +V
Sbjct: 66  YVLMEAALDGELEHIIKNINSVIGFLGDKAGNAIPLRQAEVNRILGKVDEMSEQGETMNV 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + +GE V V DGPF  F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 PYYIGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRRTPLELNYMQVEK 179


>gi|223936440|ref|ZP_03628352.1| NusG antitermination factor [bacterium Ellin514]
 gi|223894958|gb|EEF61407.1| NusG antitermination factor [bacterium Ellin514]
          Length = 182

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/182 (38%), Positives = 111/182 (60%), Gaps = 8/182 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +W+++   S  E+K  ESI  R+    ++  + E+ +P E+VV VR  +K  S R+ 
Sbjct: 1   MRSQWFVIHTLSGQEQKVKESIEKRIKAEEMEEYIKEVLVPMEKVVEVRNQKKTVSTRKL 60

Query: 61  FPGYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
           +PGYV +   + D+        ++ IK+T  VIGF+G GE P+P    E+E I +Q+  +
Sbjct: 61  WPGYVFVDMALLDENKRIIEKPWYFIKETQGVIGFVG-GEPPTPTPADEVESIKSQISDS 119

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            +R    V FEVGE V +++GPF +F+G+++ ++ E+ ++ V V IFGR TPVEL Y QV
Sbjct: 120 EEREKPKVNFEVGETVKINNGPFLNFSGVIEEIEPERGKLKVTVNIFGRNTPVELEYWQV 179

Query: 174 EK 175
           EK
Sbjct: 180 EK 181


>gi|94984750|ref|YP_604114.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300]
 gi|94555031|gb|ABF44945.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300]
          Length = 190

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 15/190 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58
           M+  WY V  Y   E +  + +  R  + G+ H  + ++  P+E  V +R+G +K    R
Sbjct: 1   MSIEWYAVHTYVGQEDRVEQHLLERAKKLGMLHTKIFQVLQPTEEAVELREGGKKETVRR 60

Query: 59  RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           + FPGYV ++  + D          +  ++ T  V GF+GT   P P++  E++ ++  V
Sbjct: 61  KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLASV 120

Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                      P   V  + G+ V V+ GPFA F+G+V  V+  +++V V V IFGR TP
Sbjct: 121 GVAAQPQEEAAPRVKVDLKPGDMVRVTAGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180

Query: 166 VELAYNQVEK 175
           VEL + QV K
Sbjct: 181 VELDFAQVSK 190


>gi|294101324|ref|YP_003553182.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261]
 gi|293616304|gb|ADE56458.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261]
          Length = 181

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 98/175 (56%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWYIVQ Y+  E +   ++  R++  G++  +  + +P E  V V+ G+     R+ +
Sbjct: 7   ERRWYIVQTYAGYENRVKANLEQRIATMGMEEEIFSVLVPVEERVFVKDGKSKKVTRKLY 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL++  + D+ ++ ++ TP V GF+G G +P P+++ EI+ IM+++     +P   +
Sbjct: 67  PSYVLVEMKLNDQSWYVVRHTPGVTGFVGAGNHPIPLSEKEIKEIMSKIGKDHAKPKIEM 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + G+ V V  GPF    G V  +  EK +V   + +FGR T VE  Y +++K+
Sbjct: 127 NLKPGDIVKVKSGPFEGQVGPVVEIVPEKGKVKFTITVFGRETVVETDYTELDKL 181


>gi|325126276|gb|ADY85606.1| Transcriptional antiterminator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 184

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  +   +G++     + FP
Sbjct: 7   KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKREEVNEKVFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120
           GYVL++ VMTD+ +  +++TP V GF+G+    S  +    E    + Q++         
Sbjct: 67  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +EVGE V +++G F    G +  + ++K ++ + + +FG  T  EL ++QV+K+
Sbjct: 127 YDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182


>gi|166031509|ref|ZP_02234338.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC
           27755]
 gi|166028914|gb|EDR47671.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC
           27755]
          Length = 171

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G +  S+++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKSVENRHLEDQILEVRVPLQDVVELKNGVQKVSQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+TD+E+  +  Q +  V      V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIQQDNIV------V 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ V V  G +A   G+++ ++ +K  V + V +FGR TPVE+++ +++++
Sbjct: 117 DFEVGDTVQVVAGAWADTVGVIQAMNAQKQSVTINVELFGRETPVEISFAEIKRV 171


>gi|146297208|ref|YP_001180979.1| NusG antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410784|gb|ABP67788.1| transcription antitermination protein nusG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 175

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 4/172 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  Y   E K   ++   +    L   + +I IP+E V  ++ G+K+  E++ FP 
Sbjct: 7   KWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKFPS 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLIKAVM + +++TI++   V GF+G    P+P+TD EIE     +    +  V     
Sbjct: 67  YVLIKAVMDNDIWYTIRNVRGVTGFVGPESKPTPLTDEEIEA----MGIKEEEVVEVFDI 122

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           EVG+ V +  GPFA F G V ++++E+ +V V + +FGR TPVE  Y+QVEK
Sbjct: 123 EVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174


>gi|300865662|ref|ZP_07110433.1| transcription antitermination protein NusG [Oscillatoria sp. PCC
           6506]
 gi|300336340|emb|CBN55583.1| transcription antitermination protein NusG [Oscillatoria sp. PCC
           6506]
          Length = 211

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
             RW+ VQV S CEK+   ++  R+    ++  + E+ IP    + + + G + +S+ + 
Sbjct: 26  EARWFAVQVASGCEKRVKANLEQRIQTLDVNDRILEVEIPQTPAIKLGKDGARRHSDEKV 85

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ +M ++ +  +K+TP VI F+G  +                          +
Sbjct: 86  FPGYVLVRMLMDEETWQIVKNTPNVINFVGAEQKRRYGRGRGHVKPLPLSNSEVERIFRQ 145

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                PV  V    G+ V V  GPF  F G V  V  E++++ V + IFGR TPVEL +N
Sbjct: 146 TQEAEPVVKVSMAAGDHVVVLSGPFKDFEGDVIEVSPERNKLKVLLSIFGRDTPVELEFN 205

Query: 172 QVEK 175
           QV+K
Sbjct: 206 QVQK 209


>gi|223038971|ref|ZP_03609263.1| transcription termination/antitermination factor NusG
           [Campylobacter rectus RM3267]
 gi|255322049|ref|ZP_05363197.1| transcription termination/antitermination factor NusG
           [Campylobacter showae RM3277]
 gi|222879944|gb|EEF15033.1| transcription termination/antitermination factor NusG
           [Campylobacter rectus RM3267]
 gi|255300862|gb|EET80131.1| transcription termination/antitermination factor NusG
           [Campylobacter showae RM3277]
          Length = 176

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E     +I   +  + ++  + EI +P+E V+ ++ G+K  +ER  
Sbjct: 1   MAHKWYAIQTYAGSEMSVKRAIENLVRDNHIEEQLKEIIVPTEDVIEIKNGKKKINERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY      +   ++H I+  PKV  F+G  + P+P+++ +I  I+ +V+     P   
Sbjct: 61  YPGYAFAHLDLDTALWHKIQSLPKVGRFIGEAKKPTPLSEKDINLILEKVQKRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +FF+ GE V +++GPFA+F GIV+  D    ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IFFDNGENVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVEILYSQVEKIV 176


>gi|186685895|ref|YP_001869091.1| transcription antitermination protein NusG [Nostoc punctiforme PCC
           73102]
 gi|186468347|gb|ACC84148.1| NusG antitermination factor [Nostoc punctiforme PCC 73102]
          Length = 213

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK   + ++E + 
Sbjct: 28  EARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPQTPAVKIRKDGSRQHTEEKV 87

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ +M D  +  +++T  VI F+G+ +           H              +
Sbjct: 88  FPGYVLVRMMMDDDTWQVVRNTSHVINFVGSEQKRGSSKGRGHVHPIPLSSSEVERIFKQ 147

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
            + Q  V  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 148 TSEQEAVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 207

Query: 172 QVEK 175
           QVEK
Sbjct: 208 QVEK 211


>gi|293400421|ref|ZP_06644567.1| transcription termination/antitermination factor NusG
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306821|gb|EFE48064.1| transcription termination/antitermination factor NusG
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 183

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  Y+  E +  E++  R+   GL   +  I +  E+ +  + G++V   +  F 
Sbjct: 7   KQWYVVNTYAGHENRVKENLERRVETMGLQDFLFRIVVAEEKEIEYKNGKEVEKTKNPFS 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+ ++ +MTD+ ++ +++TP V GF+   G G  P PV + E+E I+ ++  + ++   
Sbjct: 67  GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEDEMEAILRRLGMSERKVQ- 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + F VG+RV +  G FA+  G V+ + E+     V +++FGR TP E++Y  +EK+
Sbjct: 126 -IDFAVGDRVRILSGAFANSEGTVEELHEDSQTAIVLLILFGRETPTEISYGDLEKV 181


>gi|255282704|ref|ZP_05347259.1| transcription termination/antitermination factor NusG [Bryantella
           formatexigens DSM 14469]
 gi|255266725|gb|EET59930.1| transcription termination/antitermination factor NusG [Bryantella
           formatexigens DSM 14469]
          Length = 171

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L+  + E+ +P E VV V+ G     +++ F
Sbjct: 3   EANWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVSKTVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G  P P+T++E+  +  Q +  +      V
Sbjct: 63  PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPLGIQAKNVM------V 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             EVG+ V V  G +    G+V++++E K  V + V +FGR TPVE+ + +++K+
Sbjct: 117 DIEVGDTVSVIGGIWKDTVGVVQSINESKQIVTINVELFGRETPVEIGFAEIQKM 171


>gi|78188330|ref|YP_378668.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3]
 gi|78170529|gb|ABB27625.1| transcription antitermination protein nusG [Chlorobium
           chlorochromatii CaD3]
          Length = 191

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 105/174 (60%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY +++YS  E+K  E+I   ++R GL   + ++ +P ER V V+ G+K +  +  +P
Sbjct: 16  PRWYALRIYSGHERKVKEAIEFEVARCGLSDKILQVHVPYERFVEVKNGKKRSLTKNAYP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLI++V+  +  + I D P VIGFLG  +NP P+   E+E I+   +    R V  V 
Sbjct: 76  GYVLIESVLDKQTRNLILDVPSVIGFLGVDDNPIPLRPDEVEKILEPEKDVEHRSVVDVP 135

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F VG+ V V DGPF+S  G+V  V  E+ +V V +  FGR TP EL + QV+ +
Sbjct: 136 FNVGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRGTPTELDFTQVKPL 189


>gi|227522460|ref|ZP_03952509.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC
           8290]
 gi|227090412|gb|EEI25724.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC
           8290]
          Length = 183

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 6/176 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60
             +WY++  YS  E K   ++  R    G+  L+  I +P      V K  K   +    
Sbjct: 6   EKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRIVVPETEEHEVDKKGKDKVKMDKT 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ +MTD+ ++ +++TP V GF+G+   G  P+P+   E++ ++ ++  + +  
Sbjct: 66  FPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHE 125

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              V   VG+ V + DG F    G V  +D EK R+ V + +FGR T  EL +NQV
Sbjct: 126 DLDVN--VGDSVKIVDGAFTGLKGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQV 179


>gi|88802462|ref|ZP_01117989.1| putative transcription antitermination protein [Polaribacter
           irgensii 23-P]
 gi|88781320|gb|EAR12498.1| putative transcription antitermination protein [Polaribacter
           irgensii 23-P]
          Length = 183

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 115/177 (64%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+     E K    I   ++R GL   V+++ +P+E+V+ ++ G+K+N E+ +FP
Sbjct: 7   MKWYVVRAIGGQENKVKAYIETEIARLGLSDFVSQVIVPTEKVIQIKDGKKINKEKVYFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
           GY++++A ++ +V H IK    VIGFLG   G  P P+  +E+  ++ +V+  ++Q    
Sbjct: 67  GYIMVEANLSGEVPHVIKGITGVIGFLGEVKGGAPVPMRKAEVNRMLGKVDELSIQDENV 126

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ F++GE V V DGPF  F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 127 AIPFDIGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183


>gi|184200230|ref|YP_001854437.1| transcription antitermination protein NusG [Kocuria rhizophila
           DC2201]
 gi|183580460|dbj|BAG28931.1| transcription antitermination protein NusG [Kocuria rhizophila
           DC2201]
          Length = 294

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 20/192 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++  Y+  E +   ++  R+    ++  + +I +P E VV ++  ++    R   PGY
Sbjct: 103 WFVIHTYAGYENRVKTNLETRIQSLNMEEDIFQIEVPMEEVVEIKNSQRKTVRRVRIPGY 162

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQR------- 116
           VL++  +TD  +  ++ TP V GF+G    NP+P+   E+  ++       ++       
Sbjct: 163 VLVRMNLTDASWGAVRHTPGVTGFVGQDAYNPAPLRLDEVFDMLAPTFETPEKAKGLGET 222

Query: 117 ------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
                          +V FEVGE V V +GPF +    +  +  E  ++ V V IF R T
Sbjct: 223 AGPGAGSQGGAAQQVTVDFEVGESVIVKEGPFETLPATISEIKVESQQLVVLVSIFERET 282

Query: 165 PVELAYNQVEKI 176
           PV L +NQV KI
Sbjct: 283 PVTLGFNQVTKI 294


>gi|167758528|ref|ZP_02430655.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704]
 gi|167663724|gb|EDS07854.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704]
          Length = 171

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G +  ++++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGVQKATQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+TD+E+  +  +      +    V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIR------QENIVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F+ G+ V V  G +A   G++++++ +K  + + V +FGR TPVE+ + +V+K+
Sbjct: 117 DFQEGDTVQVIAGAWADTVGVIQSMNIQKQSLTINVELFGRETPVEIGFAEVKKM 171


>gi|153852603|ref|ZP_01994040.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814]
 gi|149754245|gb|EDM64176.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814]
          Length = 171

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P E VV ++ G +  S+++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVVEMKNGVQKVSQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+TD+E+  +  Q      R    +
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIQ------REEVVM 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +E G+ V V  G +A   G++++++ +K  + + V +FGR TPVE+ + +V+K+
Sbjct: 117 DYEEGDTVQVIAGAWADTVGVIQSINMQKQSLTINVELFGRETPVEIGFAEVKKM 171


>gi|81299446|ref|YP_399654.1| transcription antitermination protein NusG [Synechococcus elongatus
           PCC 7942]
 gi|81168327|gb|ABB56667.1| transcription antitermination protein nusG [Synechococcus elongatus
           PCC 7942]
          Length = 205

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S CEK+   ++  R+      + + ++ IP   +V ++K   + ++E + FP
Sbjct: 22  RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 81

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
           GYVL++ ++ D  +  +++TP VI F+G  +            P P++  E+  I  + +
Sbjct: 82  GYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRAQ 141

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q+P   +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 142 E--QKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFN 199

Query: 172 QVEK 175
           QV+K
Sbjct: 200 QVQK 203


>gi|255530756|ref|YP_003091128.1| transcription termination/antitermination factor NusG [Pedobacter
           heparinus DSM 2366]
 gi|255343740|gb|ACU03066.1| transcription termination/antitermination factor NusG [Pedobacter
           heparinus DSM 2366]
          Length = 180

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 112/174 (64%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  S  EKK  + I   +SR G  HLV ++ IP E+   ++ G+K+  ER F+PG
Sbjct: 6   KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKDGKKIAKERNFYPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           YVLI+A++  ++ H IK+   VIGFLG  G NP P+  +E+  I+ +V+   Q+    +V
Sbjct: 66  YVLIEAILDGELEHIIKNINSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNV 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + VGE V V DGPF  F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 AYYVGENVKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179


>gi|300779868|ref|ZP_07089724.1| transcription antitermination protein nusg [Corynebacterium
           genitalium ATCC 33030]
 gi|300533978|gb|EFK55037.1| transcription antitermination protein nusg [Corynebacterium
           genitalium ATCC 33030]
          Length = 342

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 24/197 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
           WYI+Q YS  E K   ++  R+    ++  + ++ +P E+V    + G+K   +R+  PG
Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  + D  +  +++TP V  F+G   N +PV   ++   +                
Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASEA 265

Query: 109 --------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                    +    ++P  +  F+VGE V +  G  AS +  +  +D E  ++   V IF
Sbjct: 266 NTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSIF 325

Query: 161 GRVTPVELAYNQVEKIV 177
           GR TPVEL  +Q+E+I+
Sbjct: 326 GRETPVELTADQIERIM 342


>gi|260909715|ref|ZP_05916409.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260636140|gb|EEX54136.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 181

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++  S  E K  E I   L  + L    V ++ IP E+  S+R G++V  E+   
Sbjct: 6   KNWYVLRAVSGKEAKVKEYIEAELKHNTLLQSHVFQVLIPMEKQASLRNGKRVEKEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV ++A +   V HT++  P V+GFLG  +NPSPV  S+I  ++   E        ++
Sbjct: 66  PGYVFVEANLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQSDINRMLGAAENTELENDINI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 126 PYSVDETVKVTDGPFSGFTGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|104774463|ref|YP_619443.1| transcription antitermination protein nusG [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514567|ref|YP_813473.1| transcription antiterminator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423544|emb|CAI98456.1| Transcription antitermination protein nusG [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093882|gb|ABJ59035.1| transcription antitermination protein nusG [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 184

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  +   +G+K     + FP
Sbjct: 7   KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120
           GYVL++ VMTD+ +  +++TP V GF+G+    S  +    E    + Q++         
Sbjct: 67  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +EVGE V +++G F    G +  + ++K ++ + + +FG  T  EL ++QV+K+
Sbjct: 127 YDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182


>gi|325261295|ref|ZP_08128033.1| transcription termination/antitermination factor NusG [Clostridium
           sp. D5]
 gi|324032749|gb|EGB94026.1| transcription termination/antitermination factor NusG [Clostridium
           sp. D5]
          Length = 172

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + V+ ++ G +  S+++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMQEVIELKNGVQKASQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  +M D  ++ +++T  V GF+G G  P P+ + E+  +  +      +    V
Sbjct: 63  PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMNRLGIR------QENVIV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F VG+ V V  G +    G++++++E+K  + + V +FGR TPVEL + +V K+
Sbjct: 117 EFAVGDAVTVLSGAWEGTVGVIQSLNEQKQSLSINVELFGRETPVELGFAEVRKM 171


>gi|56750899|ref|YP_171600.1| transcription antitermination protein NusG [Synechococcus elongatus
           PCC 6301]
 gi|56685858|dbj|BAD79080.1| transcription antitermination protein NusG [Synechococcus elongatus
           PCC 6301]
          Length = 209

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S CEK+   ++  R+      + + ++ IP   +V ++K   + ++E + FP
Sbjct: 26  RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 85

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
           GYVL++ ++ D  +  +++TP VI F+G  +            P P++  E+  I  + +
Sbjct: 86  GYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRAQ 145

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q+P   +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 146 E--QKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFN 203

Query: 172 QVEK 175
           QV+K
Sbjct: 204 QVQK 207


>gi|225017232|ref|ZP_03706424.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum
           DSM 5476]
 gi|224950007|gb|EEG31216.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum
           DSM 5476]
          Length = 174

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY+V  YS  E K  ++I   +    L  L+ E+ IP+E VV ++  +    ER+ F
Sbjct: 4   TAKWYVVHTYSGYENKVAQNIEKAVESRQLHDLIQEVKIPTETVVEIKDNKTREVERKLF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K ++TD  ++ +++   V GF+G    P P+T  E+E +       V+     V
Sbjct: 64  PSYVLVKMIITDDTWYVVRNIRGVTGFVGPTSKPIPLTKKEVEAL------GVEDKKVEV 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            +++G+ V + DG    F GIV+ +D + + V V V +FGR TPVEL   QV
Sbjct: 118 DYQIGDSVKIVDGSLEGFIGIVQELDVDNNMVKVTVSMFGRETPVELELTQV 169


>gi|325662632|ref|ZP_08151232.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086382|ref|ZP_08335462.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471129|gb|EGC74355.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406148|gb|EGG85671.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 171

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + V+ ++ G +   +++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVIELKNGAEKAVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  +M D  ++ +++T  V GF+G G  P P+T+ E+      +   +Q     V
Sbjct: 63  PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIQSESIVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G+ + V  G +    G V+ V+  K  + + V +FGR TPVEL++ +V+K+
Sbjct: 117 DFEEGDTITVVAGAWEGTVGAVQTVNPAKQSLTINVELFGRETPVELSFTEVKKM 171


>gi|218508075|ref|ZP_03505953.1| transcription antitermination protein NusG [Rhizobium etli Brasil
           5]
          Length = 157

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 94/157 (59%), Positives = 123/157 (78%)

Query: 20  ESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTI 79
           E I  +  + GL+HL  +I +P+E+VV VR+GRKV+SER+FFPGYVL++A +TD+ YH I
Sbjct: 1   EDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKFFPGYVLVRANLTDEAYHLI 60

Query: 80  KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139
           K+TPKV GFLG+   P P+ D E E I+ QV+  V+RP +S+ FE+GE+V VSDGPFASF
Sbjct: 61  KNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKASITFEIGEQVRVSDGPFASF 120

Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           NG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 121 NGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 157


>gi|331091902|ref|ZP_08340734.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402801|gb|EGG82368.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 171

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G +    ++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKAVSKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  +M D  ++ +++T  V GF+G G  P P+TD E+  +  Q      +    V
Sbjct: 63  PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPLGIQ------KEEIVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G+ V V+ G +    G+++ ++ +K  + + V +FGR TPVE+++ +V+K+
Sbjct: 117 DFEEGDTVTVTAGAWEGTVGVIQAMNAQKQSLTINVELFGRETPVEISFKEVKKM 171


>gi|227505155|ref|ZP_03935204.1| transcription antitermination protein NusG [Corynebacterium
           striatum ATCC 6940]
 gi|227198268|gb|EEI78316.1| transcription antitermination protein NusG [Corynebacterium
           striatum ATCC 6940]
          Length = 281

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 21/194 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + E+ +P E+++  + G+K   +R+  PG
Sbjct: 87  QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQILENKDGKKKIVKRKLLPG 146

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  + D  +  +++TP V  F+G   N +PV   ++   +                
Sbjct: 147 YVLVRMELNDAAWSVVRETPGVTSFVGNEGNATPVKIRDVAKFLMPNEAAPEAKSSAGDQ 206

Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                  +         +  FEVGE V +  GP AS +  +  +D E  ++   V IFGR
Sbjct: 207 DGEQVVAMPEKAAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 266

Query: 163 VTPVELAYNQVEKI 176
            TPVEL+  ++E+I
Sbjct: 267 ETPVELSPTEIERI 280


>gi|126659912|ref|ZP_01731036.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110]
 gi|126618776|gb|EAZ89521.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110]
          Length = 206

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 14/186 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + +I IP    V VRK   +   E + 
Sbjct: 21  AARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKV 80

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
           FPGYVL+K +M D  +  +K+TP VI F+G+ +            P P++ SE+E I  Q
Sbjct: 81  FPGYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQ 140

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            E     PV  +  E+G+++ V  GPF  F G V  V  E++++   + IFGR TPVEL 
Sbjct: 141 AEQP--EPVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELE 198

Query: 170 YNQVEK 175
           +NQVEK
Sbjct: 199 FNQVEK 204


>gi|257438468|ref|ZP_05614223.1| transcription termination/antitermination factor NusG
           [Faecalibacterium prausnitzii A2-165]
 gi|257199047|gb|EEU97331.1| transcription termination/antitermination factor NusG
           [Faecalibacterium prausnitzii A2-165]
          Length = 176

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    +   +    L  L+ +I +P+E V  ++ G++   E + FPGY
Sbjct: 10  WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+K VM D  ++ +++T    GF+G    P P++  E+E +        +    +V F 
Sbjct: 70  VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM-----GVEKAAPLTVDFN 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V ++ GP   F G+V+ +D E  +V ++V +FGR TP E+   QVE
Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174


>gi|226355465|ref|YP_002785205.1| transcription antitermination protein [Deinococcus deserti VCD115]
 gi|226317455|gb|ACO45451.1| putative transcription antitermination protein nusG [Deinococcus
           deserti VCD115]
          Length = 190

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 15/190 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58
           M+  WY V  Y   E +  + +  R ++ G+    + ++  P+E  V +R G +K   +R
Sbjct: 1   MSIEWYAVHTYVGQEDRVEQHLMERATKLGMRGTKIFQVLQPTEEAVELRDGGKKETVQR 60

Query: 59  RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           + FPGYV ++  + D          +  ++ T  V GF+GT   P P++  E++ ++  V
Sbjct: 61  KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSTQEVDRLLASV 120

Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                    + P   +  + G+ V V+ GPFA F+G+V  V+  +++V V V IFGR TP
Sbjct: 121 GVATQAPVEEAPRVKIDLKAGDMVRVTSGPFADFSGVVSEVNLPQAKVKVLVSIFGRETP 180

Query: 166 VELAYNQVEK 175
           VEL ++QV K
Sbjct: 181 VELDFSQVSK 190


>gi|226198300|ref|ZP_03793871.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929820|gb|EEH25836.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei Pakistan 9]
          Length = 164

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 15  EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
           EK    ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFPGYVL++  MTD+
Sbjct: 2   EKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTDE 61

Query: 75  VYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
            +H +K+T KV GF+G     PSP++  E+E IM+Q++  V++P     FEVGE V V +
Sbjct: 62  TWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVKE 121

Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           GPF  FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 122 GPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 164


>gi|170077651|ref|YP_001734289.1| transcription antitermination protein NusG [Synechococcus sp. PCC
           7002]
 gi|169885320|gb|ACA99033.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. PCC 7002]
          Length = 200

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFF 61
           PRWY VQV S CE++   ++  R+    +   + ++ IP    V +RK       E + F
Sbjct: 16  PRWYAVQVASGCEQRVKANLEQRIHTLDVADRIFQVQIPQTPTVKIRKDGSRQHGEEKVF 75

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEA 112
           PGYVLI+  + D+ +  IK+TP VI F+G  +  S                       +A
Sbjct: 76  PGYVLIQMTLDDEAWQVIKNTPHVINFVGAEQKRSYGRGRGHVKPVPLSKSEVERIFKQA 135

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V  P   V   +G+++ V  GPF  F G +  V  E+S++   + IFGR TPVEL + Q
Sbjct: 136 QVVEPTVKVDMAIGDKILVLSGPFKDFEGEIIEVSPERSKLKALLSIFGRDTPVELEFTQ 195

Query: 173 VEK 175
           VEK
Sbjct: 196 VEK 198


>gi|119356075|ref|YP_910719.1| transcription antitermination protein nusG [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353424|gb|ABL64295.1| transcription antitermination protein nusG [Chlorobium
           phaeobacteroides DSM 266]
          Length = 191

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 103/174 (59%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY +++YS  E+K  E I   ++R GL   + +I +P ER V V+ G+K +  +  FP
Sbjct: 16  PRWYALRIYSGHERKVKEGIEAEVARCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLI+AV+  +  + I D P V+GFLG  + P+P+   E+E I+        R V    
Sbjct: 76  GYVLIEAVLDKQTRNVILDMPSVMGFLGVDDVPTPLRPEEVEKILVTENTVEHRAVIEAP 135

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F +G+ V V DGPF+S  G+V  V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 136 FRIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189


>gi|225573375|ref|ZP_03782130.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039288|gb|EEG49534.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM
           10507]
          Length = 172

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P E VV +R G + + +++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPMEDVVEMRNGTQKSVQKKLF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G  P P+T+ E+  +  Q       P   V
Sbjct: 63  PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMRPLGIQ------EPSIVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FE G+ V V+ G +    GI+++++ +K    + V +FGR TPVE+++ +++K
Sbjct: 117 DFEEGDEVVVTGGAWKDTVGIIQSLNIQKQVATINVELFGRETPVEISFLEIKK 170


>gi|307720234|ref|YP_003891374.1| transcription antitermination protein nusG [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978327|gb|ADN08362.1| transcription antitermination protein nusG [Sulfurimonas
           autotrophica DSM 16294]
          Length = 175

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y   ++   ++I   +   GL   +T++ +P+E V+ V+ G+K  SER  
Sbjct: 1   MAHQWYSIQTY-GSDRTVRDAIFNMIEEHGLQDYITDVIVPTEDVIEVKDGKKKVSERSL 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + GYV  +  +  ++ H I+  PKV GF+G G  P+P+++ +I  I+++V      P   
Sbjct: 60  YSGYVFARIDLNTEIQHMIQSIPKVSGFIGEGNVPTPLSEHDINVILDRVNNRA-APKPK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           VFF+ GE V + DGPFA+F   V   D E   + + V IFGR TPV+++Y QVEKI+
Sbjct: 119 VFFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175


>gi|172056126|ref|YP_001812586.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15]
 gi|171988647|gb|ACB59569.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15]
          Length = 183

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 10/184 (5%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-----SERVVSVRKGRKVN 55
           M  +W++VQ YS  E     ++  R+    +D  +  + +P      E      + +   
Sbjct: 1   MDKQWFVVQTYSGFENNVKANLERRIESMNMDEKIFRVLVPIETVQEEVTNKKGETKIKE 60

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEA 112
            E + FPGYVL++ VMTD  ++ +++TP V GF   +G G  P+P+   E E+I+  +  
Sbjct: 61  REIKIFPGYVLVEMVMTDDSWYVVRNTPNVTGFLGSVGGGSKPTPLLPEEAENILGSMGL 120

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
              +  S   F +G+ V + +G FA+  G ++ ++ E  ++ V V +FGR T VEL ++Q
Sbjct: 121 VDMK--SRYDFTMGQIVRIKEGVFANLEGTIEELETEAEKMKVSVDMFGRETKVELDFSQ 178

Query: 173 VEKI 176
           VEKI
Sbjct: 179 VEKI 182


>gi|329767076|ref|ZP_08258604.1| transcription termination/antitermination factor NusG [Gemella
           haemolysans M341]
 gi|328837801|gb|EGF87426.1| transcription termination/antitermination factor NusG [Gemella
           haemolysans M341]
          Length = 181

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
           +  WY++  YS  E K  ++I  R+   G++  +  I +P E+   +    +K    R+ 
Sbjct: 6   SKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRKT 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ VMTD  +  +++TP V GF+G+    S  +    E I   ++      V  
Sbjct: 66  FPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSNVVD 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  EVG+ V V  GPF    G V N+D    +  V + I GR T VEL    +EK
Sbjct: 126 IDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIEIMGRETKVELELYNIEK 180


>gi|301168471|emb|CBW28061.1| putative transcription antitermination protein [Bacteriovorax
           marinus SJ]
          Length = 211

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 2/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+I +  +  E K   ++  R+         +EI +P E V S   GRK   +++ FPG
Sbjct: 39  KWFIAKTLTGQEGKVQRALRERIVNYKQTEFFSEIMVPEETVTSHANGRKRTIKKKLFPG 98

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVLIK +M D  +H +KDT K+ GF+G   + P+P++D E  ++  Q     ++  ++V 
Sbjct: 99  YVLIKMIMNDNTWHLVKDTDKITGFVGGTSDKPAPISDEEAAYMTGQQGEGFKKSKTTVD 158

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  GE V V +GPFASF G V+ +  EK ++ V V IFGR TPVEL + Q+EK
Sbjct: 159 FAEGETVKVIEGPFASFVGTVEAI-SEKGKIRVNVSIFGRPTPVELDFTQIEK 210


>gi|83815555|ref|YP_445881.1| transcription termination/antitermination factor NusG [Salinibacter
           ruber DSM 13855]
 gi|294507791|ref|YP_003571849.1| transcription antitermination protein NusG [Salinibacter ruber M8]
 gi|83756949|gb|ABC45062.1| transcription termination/antitermination factor NusG [Salinibacter
           ruber DSM 13855]
 gi|294344119|emb|CBH24897.1| transcription antitermination protein NusG [Salinibacter ruber M8]
          Length = 185

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 107/173 (61%), Gaps = 3/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++ +SN EKK    +   + R GL+  V EI IP+E V  ++ G K   E+ FFPGY
Sbjct: 10  WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           +L+   +T  +    +D P VIGF   GTG+ P+ + + EI+ I+ +++ A +      +
Sbjct: 70  ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQPEM 129

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            F+VG+ V V DGPF SFNGIV++V  ++ +V V V IFGR TPVEL Y QVE
Sbjct: 130 PFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182


>gi|307152580|ref|YP_003887964.1| NusG antitermination factor [Cyanothece sp. PCC 7822]
 gi|306982808|gb|ADN14689.1| NusG antitermination factor [Cyanothece sp. PCC 7822]
          Length = 210

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 10/182 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62
           RWY VQV S CEK+   ++  R+    +   + +I IP    V +RK       E + FP
Sbjct: 27  RWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQIQIPQTPTVKIRKDGSRQHGEEKVFP 86

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEAA 113
           GYVL++ +M D  +  +K+TP VI F+G  +                           A 
Sbjct: 87  GYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPMPLSSSEVERIFKVAQ 146

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            Q PV  V  EVG+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +NQ+
Sbjct: 147 GQEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEFNQI 206

Query: 174 EK 175
           EK
Sbjct: 207 EK 208


>gi|197303970|ref|ZP_03169002.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC
           29176]
 gi|197296938|gb|EDY31506.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC
           29176]
          Length = 172

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P E V  +R G +   +R+ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEEVTELRNGVEKAVQRKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  +M D  ++ +++T  V GF+G G  P P+ +SE+E++       + +    +
Sbjct: 63  PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENL------GINKEDVIM 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              VG+ V V  G +    G V+ ++E+K  + + V +FGR TPVEL +++V+K+
Sbjct: 117 DLAVGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171


>gi|172035143|ref|YP_001801644.1| transcription antitermination protein NusG [Cyanothece sp. ATCC
           51142]
 gi|171696597|gb|ACB49578.1| transcription antitermination protein [Cyanothece sp. ATCC 51142]
          Length = 214

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 14/186 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + +I IP    V VRK   +   E + 
Sbjct: 29  AARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKV 88

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109
           FPGYVL+K +M D  +  +K+TP VI F+G+ +            P P++ SE+E I  Q
Sbjct: 89  FPGYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQ 148

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            E     PV  +  E+G+++ V  GPF  F G V  V  E++++   + IFGR TPVEL 
Sbjct: 149 AEQP--EPVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELE 206

Query: 170 YNQVEK 175
           +NQVEK
Sbjct: 207 FNQVEK 212


>gi|189460672|ref|ZP_03009457.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136]
 gi|189432631|gb|EDV01616.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136]
          Length = 180

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E +   +  S L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAVSGKESKVKEYLEAEMRNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  +V H +++   VIGFLG  E+P P+  SE+  I+  V+   +    ++
Sbjct: 65  PGYVLVEAALVGEVAHHLRNITNVIGFLGGQEHPVPLRQSEVNRILGTVDELQEVSEDTN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V VS GPF+ F+GI++ V  EK ++ V V IFGR TP+EL +  VEK
Sbjct: 125 IPYTVGETVKVSVGPFSGFSGIIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179


>gi|226322715|ref|ZP_03798233.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758]
 gi|225208876|gb|EEG91230.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758]
          Length = 171

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G +  S+++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDEILEVRVPMQEVVELKNGVQKASQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+TD E+  +  Q      +    V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPLGIQ------KEDIVV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G+ V V+ G +    G+++ ++  K  + + V +FGR TPVE+++ +V+K+
Sbjct: 117 DFEEGDTVTVTGGAWEGTVGMIQTINMAKQSLTINVDLFGRETPVEISFAEVKKM 171


>gi|153816492|ref|ZP_01969160.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756]
 gi|317500772|ref|ZP_07958989.1| transcription antitermination protein nusG [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089751|ref|ZP_08338645.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846188|gb|EDK23106.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756]
 gi|316897865|gb|EFV19919.1| transcription antitermination protein nusG [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330403634|gb|EGG83189.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 172

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P E    +R G +   +R+ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMEEATELRNGVQKAVQRKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  VM D  ++ +++T  V GF+G G  P P+ + E+E++  Q      R    V
Sbjct: 63  PGYVMIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEHEMENLGIQ------RDNVIV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F VG+ V V  G +    G V++++E+K  + + V +FGR TPVEL++++V+K+
Sbjct: 117 NFGVGDMVVVLSGAWEGTVGTVQSMNEQKKSLSINVELFGRDTPVELSFSEVKKM 171


>gi|166366402|ref|YP_001658675.1| transcription antitermination protein NusG [Microcystis aeruginosa
           NIES-843]
 gi|166088775|dbj|BAG03483.1| transcription antitermination protein [Microcystis aeruginosa
           NIES-843]
          Length = 205

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFF 61
           PRWY VQV S CEK+   ++  R+    +   + ++ IP    V VRK       E + F
Sbjct: 21  PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQAATVKVRKDGSRQHGEEKVF 80

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEA 112
           PGYVLIK +M D  +  +K+TP VI F+G  +             +            +A
Sbjct: 81  PGYVLIKMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            +Q PV  +  EVG+++ V  GPF  F G V  V  E+ ++   + IFGR TPVEL +NQ
Sbjct: 141 QIQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEFNQ 200

Query: 173 VEK 175
           VEK
Sbjct: 201 VEK 203


>gi|295100380|emb|CBK97925.1| transcription antitermination protein nusG [Faecalibacterium
           prausnitzii L2-6]
          Length = 176

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    +   +    L  L+ +I +P+E V  ++ G++   E + FPGY
Sbjct: 10  WYVVHTYSGYENKVATDLQTMVENRRLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+K VM D  ++ +++T    GF+G    P P+T  E+E +        +    +V F 
Sbjct: 70  VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM-----GVEKAAPLTVDFN 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V ++ GP   F G+V+ +D E  +V ++V +FGR TP E+   QVE
Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174


>gi|182412062|ref|YP_001817128.1| NusG antitermination factor [Opitutus terrae PB90-1]
 gi|177839276|gb|ACB73528.1| NusG antitermination factor [Opitutus terrae PB90-1]
          Length = 192

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 8/179 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+ +   S  E K    I        LD  + E+ +P+E V  V+ G+K    R+ +PG
Sbjct: 12  QWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYPG 71

Query: 64  YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           YV I+  +        +K ++ +K+   VIGF+G G+ P+ +  SEI+ I  ++EAA  +
Sbjct: 72  YVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG-GDRPAALRQSEIDEIRARIEAANGK 130

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V  V + VGE V ++DG FAS  G +  +D E+ ++ V V IFGR TPVEL Y QV++
Sbjct: 131 EVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189


>gi|189345740|ref|YP_001942269.1| NusG antitermination factor [Chlorobium limicola DSM 245]
 gi|189339887|gb|ACD89290.1| NusG antitermination factor [Chlorobium limicola DSM 245]
          Length = 191

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 106/174 (60%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY +++YS  E+K  E I   + R GL+  + ++ +P ER V V+ G+K +  +  FP
Sbjct: 16  PRWYALRIYSGHERKVKEGIDAEVLRCGLEDKILQVYVPYERFVEVKNGKKRSLTKNAFP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLI+AV+  +  + I D P V+GFLG  +NP+P+   E+E I+    A   R V    
Sbjct: 76  GYVLIEAVLDKQTRNLILDIPSVMGFLGVDDNPTPLRPEEVEKILVPDNAVEHRSVIEAP 135

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F VG+ V V DGPF+S  G+V +V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 136 FRVGDSVKVVDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189


>gi|225026865|ref|ZP_03716057.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353]
 gi|224955872|gb|EEG37081.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353]
          Length = 174

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 3/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L   + E+ +P + VV ++ G K N  ++ F
Sbjct: 3   ELNWYVVHTYSGYENKVKANIEKTIENRKLQDQIFEVRVPLQDVVEMKGGVKKNVSKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G +P P++++E+ ++    ++  +     +
Sbjct: 63  PGYVLVNMVMNDDTWYVVRNTRGVTGFVGPGSDPVPLSEAEMRNLGIVAQSDNE---VEI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             E+G+ V V+ G +      V  ++  K  V +EV +FGR T VE+ +  V+K+
Sbjct: 120 DIEIGDLVEVTSGAWEGRVSTVTAINMNKQTVTIEVDMFGRETSVEIGFLDVKKL 174


>gi|170017874|ref|YP_001728793.1| transcription termination/antitermination factor NusG [Leuconostoc
           citreum KM20]
 gi|169804731|gb|ACA83349.1| Transcription termination/antitermination factor NusG [Leuconostoc
           citreum KM20]
          Length = 211

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 8/184 (4%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++V  YS  E K   ++  R    G+   +  I +P + V +++ G    S    F
Sbjct: 25  EKSWFVVHTYSGYEHKVKANLESRTQTMGMSQQIFRILVPEQEVTTIQDGEAKTSVENDF 84

Query: 62  PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAA 113
           PGYVL++        MTD+ ++ +++TP V GFLG+    S       E   ++ +    
Sbjct: 85  PGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMGM 144

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           V R V  +  EVG+ V +  GPF+   G V  +D EK  +   V +FGR TP EL +  V
Sbjct: 145 VTREVVDLDVEVGQVVKIIAGPFSGMEGTVTAIDSEKQTLEATVEVFGRETPTELDFADV 204

Query: 174 EKIV 177
           + ++
Sbjct: 205 DTVL 208


>gi|21672991|ref|NP_661056.1| transcription antitermination protein NusG [Chlorobium tepidum TLS]
 gi|21646053|gb|AAM71398.1| transcription antitermination protein NusG [Chlorobium tepidum TLS]
          Length = 191

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 104/173 (60%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY +++YS  E+K  ESI   + R GL   + ++ IP ER V V+ G+K +  +  FPG
Sbjct: 17  HWYALRIYSGHERKVKESIEMEVERCGLSESIKQVYIPYERFVEVKNGKKRSLTKNAFPG 76

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI+AV+  +  + I D P V+GFLG  +NP+P+   E+E I+    A   R V    F
Sbjct: 77  YVLIEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPGGAIEHRAVVEAPF 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +VG+ V V DGPF+S  GIV  V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 137 KVGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKPV 189


>gi|159028397|emb|CAO89839.1| nusG [Microcystis aeruginosa PCC 7806]
          Length = 205

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFF 61
           PRWY VQV S CEK+   ++  R+    +   + ++ IP    V VRK       E + F
Sbjct: 21  PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQSATVKVRKDGSRQHGEEKVF 80

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEA 112
           PGYVLI+ +M D  +  +K+TP VI F+G  +             +            +A
Sbjct: 81  PGYVLIRMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            +Q PV  +  EVG+++ V  GPF  F G V  V  E+ ++   + IFGR TPVEL +NQ
Sbjct: 141 EIQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEFNQ 200

Query: 173 VEK 175
           VEK
Sbjct: 201 VEK 203


>gi|210613431|ref|ZP_03289714.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787]
 gi|210151174|gb|EEA82182.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787]
          Length = 176

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P   VV ++ G +  ++++ F
Sbjct: 8   EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMLEVVEMKNGTQKAAQKKMF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  +M D  ++ +++T  V GF+G G  P P+T++EI+ +              V
Sbjct: 68  PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEIDALGIM------DADIVV 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVGE V V+ G +    G+++ V+ +K  + + V +FGR TPVE+++ +V+K+
Sbjct: 122 DFEVGEVVKVTKGAWKDTIGVIQEVNAQKQSLVINVELFGRETPVEISFAEVKKM 176


>gi|225012649|ref|ZP_03703084.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A]
 gi|225003182|gb|EEG41157.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A]
          Length = 184

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K  + I   +SR G DHLV +I +P+E+V+ +R G+K+N ER +FP
Sbjct: 8   KKWYVVRAVSGQEAKIKDYIMSEISRFGYDHLVEDILVPTEKVIQIRNGKKINKERVYFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV-QRPVS 119
           GY+++KA +T ++ H IK    VIGFLG   G  P P+  SE+  ++ +V+         
Sbjct: 68  GYIMVKANLTGELPHIIKSVTNVIGFLGETKGGEPVPLRVSEVNRMLGKVDELALATEHV 127

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ F  GE V V DGPF  F G ++NV+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 128 SIPFTEGENVKVIDGPFNGFTGAIENVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184


>gi|149278895|ref|ZP_01885030.1| putative transcription antitermination protein [Pedobacter sp.
           BAL39]
 gi|149230514|gb|EDM35898.1| putative transcription antitermination protein [Pedobacter sp.
           BAL39]
          Length = 180

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  S  EKK  + I   +SR G  HLV ++ IP E+   +++G+K+  ER F+PG
Sbjct: 6   KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKEGKKIAKERNFYPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           YVLI+A +  ++ H IK+   VIGFLG  G NP P+  +E+  I+ +V+   Q+    ++
Sbjct: 66  YVLIEANLDGELEHIIKNVNSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + VGE + V DGPF  F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 AYYVGENIKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179


>gi|291549807|emb|CBL26069.1| transcription antitermination protein nusG [Ruminococcus torques
           L2-14]
          Length = 172

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P E V  +R G +   +R+ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIDKTIETRHLEDQILEVRVPLEEVPEIRNGVEKVVQRKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+I  +M D  ++ +++T  V GF+G G  P P+ +SE+E++  + +  +      +
Sbjct: 63  PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENLGIKQDEVI------L 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             E+G+ V V  G +    G V+ ++E+K  + + V +FGR TPVEL +++V+K+
Sbjct: 117 DLEIGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171


>gi|325104986|ref|YP_004274640.1| transcription antitermination protein nusG [Pedobacter saltans DSM
           12145]
 gi|324973834|gb|ADY52818.1| transcription antitermination protein nusG [Pedobacter saltans DSM
           12145]
          Length = 180

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 111/174 (63%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  S  EKK  + I   +SR  L+HLV ++ IP E+   +R G+K+  ER ++PG
Sbjct: 6   KWYVVRAVSGKEKKVKQYIDAEISRLELNHLVPQVLIPMEKYYQMRDGKKIAKERNYYPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           YVL++A +  ++   IK+   VIGFLG    N  P+  +E+  I+ +V+   ++  + ++
Sbjct: 66  YVLVEAALNAELELIIKNLNSVIGFLGDKDGNAVPLRPAEVNRILGKVDEMTEQGEMMNI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + VGE V V DGPF  F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 PYYVGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179


>gi|86606432|ref|YP_475195.1| transcription antitermination protein NusG [Synechococcus sp.
           JA-3-3Ab]
 gi|86554974|gb|ABC99932.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. JA-3-3Ab]
          Length = 223

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 14/186 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
           RWY VQV S CE K   ++  R +   +   + E+ IP      + R G++   E + FP
Sbjct: 40  RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111
           GYVL++  + D  +  +K TP VI F+GT E            P P++ SE++ I + VE
Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
             V+     +    G+R+ V  GPF  F G V +V  E+ ++   + IFGR TPVEL + 
Sbjct: 160 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217

Query: 172 QVEKIV 177
           QV K V
Sbjct: 218 QVRKEV 223


>gi|241889605|ref|ZP_04776903.1| transcription termination/antitermination factor NusG [Gemella
           haemolysans ATCC 10379]
 gi|241863227|gb|EER67611.1| transcription termination/antitermination factor NusG [Gemella
           haemolysans ATCC 10379]
          Length = 181

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
           +  WY++  YS  E K  ++I  R+   G++  +  I +P E+   +    +K    R+ 
Sbjct: 6   SKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRKT 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGYVL++ VMTD  +  +++TP V GF+G+    S  +    E I   ++      V  
Sbjct: 66  FPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSNVVD 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  EVG+ V V  GPF    G V N+D    +  V + + GR T VEL    +EK
Sbjct: 126 IDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIELMGRETKVELELYNIEK 180


>gi|227549794|ref|ZP_03979843.1| transcription antitermination protein NusG [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078049|gb|EEI16012.1| transcription antitermination protein NusG [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 311

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 24/198 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R+    ++  + ++ +P E+ + ++ G++    R+  PG
Sbjct: 114 QWYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQAIELKDGKRKIVNRKLLPG 173

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  M D  +  +++TP V  F+G   N +PV   ++   +                
Sbjct: 174 YVLVRMDMNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKEPTVVGDASQKSA 233

Query: 109 ---------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
                     +      P  +  +EVGE V +  G  A+ +  +  +D E  ++   V I
Sbjct: 234 VNAEGETVIAMPEQEVAPKLAHDYEVGEAVTILTGALATVSATISEIDPESGKIQALVSI 293

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGR TPVEL  +Q+E+I+
Sbjct: 294 FGRETPVELTADQIERIM 311


>gi|288929390|ref|ZP_06423235.1| transcription termination/antitermination factor NusG [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329492|gb|EFC68078.1| transcription termination/antitermination factor NusG [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 181

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++  S  E K  E I   L  + +    V ++ IP E+  S+R G++V  E+   
Sbjct: 6   KNWYVLRAVSGKEAKVKEYIEAELKHNTMLQSHVFQVLIPMEKQASLRNGKRVEKEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV ++A +   V HT++  P V+GFLG  +NPSPV  ++I  ++   E         +
Sbjct: 66  PGYVFVEADLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQADINRMLGAAENTELENDIDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 126 PYSVDETVKVTDGPFSGFMGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179


>gi|220913452|ref|YP_002488761.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6]
 gi|219860330|gb|ACL40672.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6]
          Length = 267

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R+    ++  + EI +P E VV ++  ++    R   PGY
Sbjct: 85  WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 144

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++  +TD  +  ++ TP V GF+G   NP P+   E+  ++  V    Q         
Sbjct: 145 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 204

Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                  V FEVGE V V +GPF +    +  +  E   + V V IF R TPV LA+NQV
Sbjct: 205 QHQAPVDVDFEVGESVIVKEGPFETLPATISEIKVESQTLVVLVSIFERETPVTLAFNQV 264

Query: 174 EKI 176
            KI
Sbjct: 265 TKI 267


>gi|295396488|ref|ZP_06806649.1| transcription termination/antitermination factor NusG
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970680|gb|EFG46594.1| transcription termination/antitermination factor NusG
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 270

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 18/190 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + E+ +P E VV V+  ++    R   PGY
Sbjct: 81  WYVIHSYAGYENRVKANLENRTVSLDMEDYIFEVQVPMEDVVEVKNAQRKTVRRVRIPGY 140

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120
           VL++  +TD+ +  ++ TP V GF+G   +P P+T  E+  ++  V    +   ++    
Sbjct: 141 VLVRMELTDESWGVVRHTPGVTGFVGNAYDPIPLTMDEVVSMLAPVIEEHEAARAAEEGE 200

Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                         V FEVGE V V +G F      ++ +  E+ ++ V + IF R  PV
Sbjct: 201 ARKAAEAASGSEIVVEFEVGETVMVKEGSFEGHPATIQEIRPEQQKLTVLLSIFERDVPV 260

Query: 167 ELAYNQVEKI 176
           EL + QV KI
Sbjct: 261 ELGFGQVSKI 270


>gi|196233624|ref|ZP_03132465.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
 gi|196222294|gb|EDY16823.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
          Length = 188

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY VQV +  E K ++++  R+    +   V E+ +P+ERV  V++G+K  + R+  PG
Sbjct: 9   QWYAVQVLAGQENKVLDNLTKRIKTEEMSDFVYEVIVPTERVSEVKRGKKTETVRKLMPG 68

Query: 64  YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           YVL+   +        D+ ++ I++T  VIGF G  E P P+  SE+E ++ QV    ++
Sbjct: 69  YVLVNMWLLDENRQPVDRTWYFIRETTGVIGFAGNKERPIPMRPSEVEAVLAQVRGTEEK 128

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               + F VGE V VSDGPF + +G V  +D ++ ++ V + IFGR    EL Y Q+E+
Sbjct: 129 AKPKIEFNVGETVKVSDGPFQNQSGTVTEIDPDRGKIRVSISIFGREAIAELEYWQIER 187


>gi|317495156|ref|ZP_07953526.1| transcription termination/antitermination factor NusG [Gemella
           moribillum M424]
 gi|316914578|gb|EFV36054.1| transcription termination/antitermination factor NusG [Gemella
           moribillum M424]
          Length = 181

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY++  YS  E K  ++I  R+    ++  +  I +P E+   +    ++    R+ F
Sbjct: 7   KEWYVIHTYSGYENKVKDNIEKRVESLNMEDKIFRIVVPEEKETIITPTGKRKEVNRKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ VMTD  +  +++TP V GF+G+    S  +    E I   ++      V  V
Sbjct: 67  PGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSSVVDV 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             EVG+ V V  GPF    G V N+D    +V V + + GR T VEL    +EK
Sbjct: 127 DIEVGDHVRVISGPFVGMEGKVVNIDLNNYKVDVMIELMGRETKVELELYNIEK 180


>gi|89890187|ref|ZP_01201698.1| transcription termination/antitermination factor NusG
           [Flavobacteria bacterium BBFL7]
 gi|89518460|gb|EAS21116.1| transcription termination/antitermination factor NusG
           [Flavobacteria bacterium BBFL7]
          Length = 185

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V+  S  E K  + I   ++   L   + +I +P+E+VV +R G+K+N E+ +FP
Sbjct: 9   MHWYVVRSVSGQENKIKDYIESEIAHHNLQDYLKQILVPTEKVVQIRNGKKINKEKVYFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
           GY++I+A +  +V H IK    VIGFLG   G +P P+  SE+  ++ +V+   ++    
Sbjct: 69  GYIMIQARLEGEVPHIIKSVNGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAEQVDNI 128

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ ++VGE + V DGPF  FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 129 AIPYKVGETIKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185


>gi|315651271|ref|ZP_07904300.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
 gi|315486475|gb|EFU76828.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
          Length = 177

 Score =  147 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 94/175 (53%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +W++   YS  E K    I   +   GL   + E+T+P E ++ V+ G + +S+++ F
Sbjct: 3   EAQWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI   M D+ ++ +++T  V GF+G G  P P+T+ E+  +     A        V
Sbjct: 63  PGYVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTEDELVALGYSGNATKPEARLEV 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +VG+ V V  G +    G++  V+E++  V + V +FGR T VEL + +V K+
Sbjct: 123 DLKVGDMVSVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVRKV 177


>gi|325299607|ref|YP_004259524.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170]
 gi|324319160|gb|ADY37051.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170]
          Length = 180

 Score =  147 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E I   +  + L   V+++ IP+E+V  VR G+K+  ER + 
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYIEAEMRNTELGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVLI+A +  +V H +++   VIGFLG  ++P P+  SE+  I+  V+   +     +
Sbjct: 65  PGYVLIEAALVGEVAHQLRNITNVIGFLGGLDHPVPLRQSEVNRILGTVDELQEVSEDMN 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + VGE V VS GPF+ F+G+++ V  EK ++ V V IFGR TP+EL +  VEK
Sbjct: 125 VPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179


>gi|23012400|ref|ZP_00052495.1| COG0250: Transcription antiterminator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 244

 Score =  147 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 108/151 (71%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY++ VYS  EKK  +SI  +  + G+     +I +P+E VV VR+G KVN+ER+FF
Sbjct: 3   TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGTKVNAERKFF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K  +TD  +H +K+TPKV GFLG    P P+T+ E E I+ QV+  V+RP  S+
Sbjct: 63  PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152
            FEVGE+V VSDGPF SFNG+V+ VDEEK+R
Sbjct: 123 TFEVGEQVRVSDGPFTSFNGMVEEVDEEKAR 153


>gi|119511572|ref|ZP_01630680.1| transcription antitermination protein NusG [Nodularia spumigena
           CCY9414]
 gi|119463807|gb|EAW44736.1| transcription antitermination protein NusG [Nodularia spumigena
           CCY9414]
          Length = 203

 Score =  147 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK   + ++E + 
Sbjct: 18  EARWYAVQVASGCEKRVKTNLEQRIQTFDVSDKIVQVEIPHTPAVKIRKDGSRQHTEEKV 77

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ VM D  +  +++T  VI F+G  +                          +
Sbjct: 78  FPGYVLVRMVMEDDTWQVVRNTSHVINFVGAEQKRGGSKSRGHVKPVPLGASEVERIFKQ 137

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
            + Q P+  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 138 TSEQEPIVKIDMAAGDKIVVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 197

Query: 172 QVEK 175
           QVEK
Sbjct: 198 QVEK 201


>gi|194337666|ref|YP_002019460.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310143|gb|ACF44843.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
          Length = 191

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 102/173 (58%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY +++YS  E+K  E+I   + R GL   + +I +P ER V V+ G+K +  +  FPG
Sbjct: 17  RWYALRIYSGHERKVKEAIDADVIRCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFPG 76

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI+AV+  +  + I D P V+GFLG  + P+P+   E+E I+        R V    F
Sbjct: 77  YVLIEAVLDKQTRNLILDIPSVMGFLGVDDVPTPLRPEEVEKILEPESTIEHRSVVEAPF 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +G+ V V DGPF+S  G+V  V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 137 RIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189


>gi|323141142|ref|ZP_08076045.1| transcription termination/antitermination factor NusG
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414408|gb|EFY05224.1| transcription termination/antitermination factor NusG
           [Phascolarctobacterium sp. YIT 12067]
          Length = 186

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY++  YS  E K   ++  ++   G+++ +  I IP+E+ V +    +K   E + F
Sbjct: 8   KHWYVIHTYSGYENKVRANLERKVHSLGMENEIFRIEIPTEKEVEITSDGKKKVVEHKVF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP---V 118
           PGYVL++ ++ ++ ++ +++T  V GF+G+         +E    +              
Sbjct: 68  PGYVLVEMIVNERNWYAVRNTAGVTGFVGSDSTHPTPLTAEEVRQIMPSMGMEVEETVKP 127

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + + F++ +RV +   PF  F G +  ++EEK ++ V V I GR TPVE+ + QVE+I
Sbjct: 128 AKIDFQLHQRVRIKTAPFMDFEGTISEINEEKGKLKVLVDIMGRETPVEIDFTQVEEI 185


>gi|291521805|emb|CBK80098.1| transcription antitermination protein nusG [Coprococcus catus GD/7]
          Length = 187

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 3/175 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K   +I   +    L+  + ++ +P + V+ V+ G+K   +++ FPGY
Sbjct: 13  WYVVHTYSGYENKVKTNIDKSIQNLHLEDQILDVQVPVQEVIEVKDGKKKTVQKKLFPGY 72

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---V 121
           VL+  +M D+ ++ +++T  V GF+G    P P+T+ E+  +   +  A +        V
Sbjct: 73  VLLHMIMNDETWYVVRNTRGVTGFVGPESKPVPLTEEEMAAMGINMNDAEKDEPDQMILV 132

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             E G+ V +  G +    GIV++V+     V V + +FGR T VE+++  + K+
Sbjct: 133 DIEEGDMVNIVSGAWQDKEGIVQSVNSANGTVTVGLDMFGRETAVEISFLDIRKM 187


>gi|110589446|gb|ABG77232.1| transcription antitermination protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 179

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 12  SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
                +   S+  R++R G++    E+ +P+E VV +R G++  SER+FFPGYVL++  M
Sbjct: 13  PGSNAQVQRSLKERVARFGMEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEM 72

Query: 72  TDKVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
           TD+ +H +KD PKV+GF+G        P+TD E + I+ +V+  V++P   V FE GE V
Sbjct: 73  TDETWHLVKDVPKVLGFIGGYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVV 132

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V DGPF  F+G+V+ VD EKSR+ V V+IFGR TPV+L + QVEK
Sbjct: 133 RVVDGPFNDFSGVVEEVDYEKSRLKVSVLIFGRSTPVDLEFGQVEK 178


>gi|329907539|ref|ZP_08274680.1| Transcription antitermination protein NusG [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546946|gb|EGF31851.1| Transcription antitermination protein NusG [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 164

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 15  EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
           EK    ++  R++R+G+D    +I +P+E V+ V+ G+K  +ERRFFPGYVL++  MTD+
Sbjct: 2   EKSVQRALTERVTRAGMDEKFGQILVPTEEVIEVKNGQKTVTERRFFPGYVLVEMEMTDE 61

Query: 75  VYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133
            +H +K+T KV GF+G     P+P+  +E++ IM Q++  +++P   V +EVGE V + D
Sbjct: 62  TWHLVKNTSKVTGFIGGKSNKPTPIPPNEVDKIMQQMQEGIEKPRPKVLYEVGELVRIKD 121

Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           GPF  FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK
Sbjct: 122 GPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEK 163


>gi|325285445|ref|YP_004261235.1| NusG antitermination factor [Cellulophaga lytica DSM 7489]
 gi|324320899|gb|ADY28364.1| NusG antitermination factor [Cellulophaga lytica DSM 7489]
          Length = 183

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/178 (39%), Positives = 112/178 (62%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+  S  E K    I   ++R G    + ++ +P+E+VV VR G+K+N E+ +F
Sbjct: 6   EKKWYVVRAVSGQENKIKGYIESEVARLGFSDYLEDVLVPTEKVVQVRNGKKINKEKVYF 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118
           PGY+++KA +  ++ H I+    VIGFLG   G +P P+  SE+  ++ +V+  AV    
Sbjct: 66  PGYIMVKANLGGEMVHIIRSITNVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVTTDS 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F +GE + V DGPF  FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 VAIPFVLGETIKVVDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183


>gi|296111502|ref|YP_003621884.1| transcription antitermination protein NusG [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833034|gb|ADG40915.1| transcription antitermination protein NusG [Leuconostoc kimchii
           IMSNU 11154]
          Length = 217

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 10/185 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++V  YS  E K   ++  R     +   +  I +P + V +++ G    S    F
Sbjct: 32  EKSWFVVHTYSGYEHKVKANLESRTQTMRMTEQIFRILVPEQEVTTIQDGEAKTSVENDF 91

Query: 62  PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112
           PGYVL++        MTD+ ++ +++TP V GFLG+   G  P+ +   E++ +M ++  
Sbjct: 92  PGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRM-G 150

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
              R V ++  E G+ V +  GPF+   G V  VD EK  +   V +FGR TP EL +  
Sbjct: 151 MSTREVVTLDVEAGQIVKIIAGPFSGMEGTVTAVDPEKQTLEATVEVFGRETPTELDFAD 210

Query: 173 VEKIV 177
           V+ ++
Sbjct: 211 VDTVL 215


>gi|313673493|ref|YP_004051604.1| transcription antitermination protein nusg [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940249|gb|ADR19441.1| transcription antitermination protein nusG [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 175

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 4/177 (2%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  +WY+V  YS  EK+  + +  ++    L     EI IP+E VV + KG K  S++ 
Sbjct: 1   MSNKQWYVVHTYSGFEKRVKKLLEEKIKNENLYDSFGEILIPTENVVELVKGTKKISKKS 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGY+L+  VM  + +H +K  PKV GF+G               I     A  + P  
Sbjct: 61  TFPGYILVNMVMNTENWHKVKSIPKVTGFVGGVNPVPIPEQDVKAMID---LAKSEAPRI 117

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ +  G+ V V DGPF  F G+V  V+ EK +V V V IFGR TP++L + Q++++
Sbjct: 118 AMKYIKGDVVEVVDGPFQGFTGVVDEVNTEKEKVKVIVSIFGRQTPIDLDFLQIKRV 174


>gi|268678989|ref|YP_003303420.1| transcription termination/antitermination factor NusG
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617020|gb|ACZ11385.1| transcription termination/antitermination factor NusG
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 176

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E+   + I   ++  G+   + +I +P+E V+ V+ G+K  SER  
Sbjct: 1   MAHKWYAIQTYAGSEQAVKKGIITLVNDHGIAEKLEQIVVPTEDVIEVKNGKKKISERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGY   K  +   ++H I+  PKV  F+G  + P+P+T+ +I  I+ +       P   
Sbjct: 61  YPGYAFAKLDLDTALWHLIQSLPKVGRFIGESKKPTPLTEKDIALILEK-AEKKGAPKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +FFE GE V +++GPFA+F G V+  D    ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 IFFETGESVRITEGPFANFTGSVEEYDMVHGKLTLNVSIFGRSTPVEILYSQVEKIV 176


>gi|199598558|ref|ZP_03211975.1| Transcription antiterminator [Lactobacillus rhamnosus HN001]
 gi|229552909|ref|ZP_04441634.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509294|ref|YP_003172045.1| transcription antitermination protein NusG [Lactobacillus rhamnosus
           GG]
 gi|258540480|ref|YP_003174979.1| transcription antitermination protein nusG [Lactobacillus rhamnosus
           Lc 705]
 gi|199590600|gb|EDY98689.1| Transcription antiterminator [Lactobacillus rhamnosus HN001]
 gi|229313717|gb|EEN79690.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149221|emb|CAR88194.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus
           GG]
 gi|257152156|emb|CAR91128.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus
           Lc 705]
 gi|259650575|dbj|BAI42737.1| transcription antiterminator [Lactobacillus rhamnosus GG]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E K   ++  R S   +D  +  + +P E     + G++    ++ F
Sbjct: 9   EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ +  +++TP V GF+G+   G  P+P+   E+  +++ +   +    
Sbjct: 69  PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVASVLHSMG--MSTRH 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V F+VGE V + DG F   +G V  VD++K ++ V   +F R    EL ++QV+K+
Sbjct: 127 QDVEFDVGEPVTIIDGAFTGMHGKVTAVDKDKMKLKVVTEMFDREVTAELDFDQVDKL 184


>gi|260437417|ref|ZP_05791233.1| transcription termination/antitermination factor NusG [Butyrivibrio
           crossotus DSM 2876]
 gi|292810049|gb|EFF69254.1| transcription termination/antitermination factor NusG [Butyrivibrio
           crossotus DSM 2876]
          Length = 175

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K   +I   +    L+  + E+++P +  V ++ G K   +++ FPGY
Sbjct: 10  WYVVHTYSGYENKVKANIEKTIENRHLEDQILEVSVPLQDAVEIKNGVKKQVQKKIFPGY 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VLI  ++ D  ++ +++T  V GF+G G  P P+TD E+ ++   +            + 
Sbjct: 70  VLIHMILNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMNNLGISIGKVAAE------YS 123

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +G+ V    G + +  G +K++++ K  V + V +FGR TPVEL + ++  I
Sbjct: 124 LGDTVMAISGVWENTVGEIKSINDNKQTVTITVDMFGRETPVELGFTEIRHI 175


>gi|330997390|ref|ZP_08321241.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
 gi|329570764|gb|EGG52480.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
          Length = 181

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K  E I   + +      V+++ IP+E+VV VR G+++  ER   
Sbjct: 5   EMKWYVMRAVSGKESKVKEYIDAEIKKGDFGKFVSQVLIPTEKVVQVRNGKRIVKERNHL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYVL++A +  ++   +++TP V+GFLG +  NP+P+  SE+  ++  V+     P   
Sbjct: 65  PGYVLVEAALVGEIPVLLRNTPNVLGFLGESNSNPTPLRQSEVNRLLGAVDEMQDVPEEV 124

Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + +  GE V V++GPF+ F+ +++ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 125 LIPYAEGETVKVTEGPFSGFSAVIEEVNNEKKKLKVMVKIFGRKTPLELGFMQVEK 180


>gi|266621462|ref|ZP_06114397.1| transcription termination/antitermination factor NusG [Clostridium
           hathewayi DSM 13479]
 gi|288866903|gb|EFC99201.1| transcription termination/antitermination factor NusG [Clostridium
           hathewayi DSM 13479]
          Length = 171

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+++P E V+ ++ G +  ++++ F
Sbjct: 3   EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+T+ E+ ++  +           V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMANLGFR------NEEVIV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ V V  G +    G +K+++E K  + + V +FGR TPVEL +N+++K+
Sbjct: 117 DFEVGDTVVVISGAWKDTVGAIKSINEGKKSITINVEMFGRETPVELNFNEIKKM 171


>gi|225420372|ref|ZP_03762675.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme
           DSM 15981]
 gi|225040991|gb|EEG51237.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme
           DSM 15981]
          Length = 171

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+++P   VV ++ G +  ++++ F
Sbjct: 3   EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T+ E++ +  + E  V      V
Sbjct: 63  PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMKGLGFRHEDVV------V 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ V V++G +    G +K +++ K  V + V +FGR TPVEL + +V+K+
Sbjct: 117 DFEVGDTVVVTNGAWKDTVGAIKAINDGKKTVTINVEMFGRETPVELGFAEVKKM 171


>gi|223982628|ref|ZP_03632862.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM
           12042]
 gi|223965408|gb|EEF69686.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM
           12042]
          Length = 182

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V  Y+  E +  E++  R+   G+   +  I +  E  +  + G+KV      FP
Sbjct: 6   KEWYVVNTYAGHENRVKENLQRRVDTMGISDYLFRILVAEEPEIEYKNGKKVEKMHNLFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+ ++ +MTD+ ++ +++TP V GF+   G G  P PV+  EI+ I+ ++  + ++   
Sbjct: 66  GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSPEEIDSILRRIGMSDRKV-- 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           SV F  G+RV +  GPF+   G +  ++++     V  ++FGR TP E+AYN +EK+
Sbjct: 124 SVNFTTGDRVKILTGPFSGIEGSIDAMNDDTQTATVLCILFGRETPTEIAYNDLEKV 180


>gi|67925194|ref|ZP_00518562.1| transcription antitermination protein NusG [Crocosphaera watsonii
           WH 8501]
 gi|67852953|gb|EAM48344.1| transcription antitermination protein NusG [Crocosphaera watsonii
           WH 8501]
          Length = 214

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S CEK+   ++  R+    +   + +I IP    V VRK   +   E + FP
Sbjct: 31  RWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKVFP 90

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------- 115
           GYVL++ +M D  +  +K+TP VI F+G+ +  +          +    + V+       
Sbjct: 91  GYVLVRMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRRRGHVKPLPLSASEVERIFRQAE 150

Query: 116 --RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              P+  +  E+G+++ V  GPF  F G V  V  E++++   + IFGR TPVEL +NQV
Sbjct: 151 QPEPLVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFNQV 210

Query: 174 EK 175
           EK
Sbjct: 211 EK 212


>gi|227536126|ref|ZP_03966175.1| transcription antitermination protein NusG [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300772097|ref|ZP_07081967.1| transcription termination/antitermination factor NusG
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227244023|gb|EEI94038.1| transcription antitermination protein NusG [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300760400|gb|EFK57226.1| transcription termination/antitermination factor NusG
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 181

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +WY+V+  S  EKK  + I   +SR G+ HLV ++ IP E+   +R G+KV  ER ++
Sbjct: 5   SLKWYVVRAVSGKEKKVKQYIDAEISRLGIQHLVAQVLIPMEKYYQMRDGKKVAKERNYY 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
           PGYVLI+A +  +  H IK+   VIGFLG    N  P+  SE+  I+ +V+   ++    
Sbjct: 65  PGYVLIEASLDAETEHVIKNINSVIGFLGDKAGNAIPLRPSEVNRILGKVDEMAEQGETI 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +V + VGE V V+DGPF  F G ++ V E+K ++ V V +FGR TP+EL Y QVEK
Sbjct: 125 NVPYYVGETVKVNDGPFNGFTGEIEEVHEDKKKLIVMVKVFGRKTPLELNYMQVEK 180


>gi|302337466|ref|YP_003802672.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
 gi|301634651|gb|ADK80078.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  YS  E K    +   +        +T++ +PSE VV V+ G+K  + R+F
Sbjct: 1   MAKGWYVLHTYSGYENKIERFLRKMMGDGDFGDALTDVKVPSEEVVEVKDGKKKVTNRKF 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAV 114
            PGY+L++  + D+ +      IK    V GF+G   G  P P++  E + I+ +     
Sbjct: 61  LPGYILLEMDLPDRGWKAVCSQIKKIQGVTGFVGAPVGAKPQPISSDEAKAILQKSGEIK 120

Query: 115 QR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     F VGE V + DGPF +F G ++ V+ EK ++ V V IFGR TPVE+ + Q
Sbjct: 121 ADRTVRPRQSFSVGEVVRIVDGPFDTFTGNIEEVNLEKGKLRVMVGIFGRSTPVEVDFLQ 180

Query: 173 VEKI 176
           VEKI
Sbjct: 181 VEKI 184


>gi|300812659|ref|ZP_07093071.1| transcription termination/antitermination factor NusG
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496389|gb|EFK31499.1| transcription termination/antitermination factor NusG
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 194

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  +   +G+K     + FP
Sbjct: 17  KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 76

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120
           GYVL++ VMTD+ +  +++TP V GF+G+    S  +    E    + Q++         
Sbjct: 77  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 136

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +EVGE V ++ G F    G +  + ++K ++ + + +FG  T  EL ++QV+K+
Sbjct: 137 YDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHATTAELGFDQVKKM 192


>gi|116495742|ref|YP_807476.1| transcription antiterminator [Lactobacillus casei ATCC 334]
 gi|227533698|ref|ZP_03963747.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630147|ref|ZP_04673178.1| transcription antiterminator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067297|ref|YP_003789320.1| transcription antiterminator [Lactobacillus casei str. Zhang]
 gi|116105892|gb|ABJ71034.1| transcription antitermination protein nusG [Lactobacillus casei
           ATCC 334]
 gi|227188682|gb|EEI68749.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527759|gb|EEQ66760.1| transcription antiterminator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439704|gb|ADK19470.1| Transcription antiterminator [Lactobacillus casei str. Zhang]
 gi|327383308|gb|AEA54784.1| NusG antitermination factor [Lactobacillus casei LC2W]
 gi|327386491|gb|AEA57965.1| NusG antitermination factor [Lactobacillus casei BD-II]
          Length = 184

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E K   ++  R S   +D  +  + +P E     + G++    ++ F
Sbjct: 9   EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ +  +++TP V GF+G+   G  P+P+   E+ ++++ +   +    
Sbjct: 69  PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMG--MSTRH 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + V F+VGE V + DG F   +G V  VD+EK ++ V   +F R    EL ++QV+K+
Sbjct: 127 NDVEFDVGEPVTIIDGAFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184


>gi|282899203|ref|ZP_06307177.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505]
 gi|281195886|gb|EFA70809.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK   +  +E + 
Sbjct: 24  EARWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKV 83

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ +M+D  +  +K+T  VI F+G  +                          +
Sbjct: 84  FPGYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSGRSRGHVKPVPLSNSEVERIFKQ 143

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q PV  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 144 TTEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203

Query: 172 QVEK 175
           QV+K
Sbjct: 204 QVQK 207


>gi|313904451|ref|ZP_07837828.1| NusG antitermination factor [Eubacterium cellulosolvens 6]
 gi|313470787|gb|EFR66112.1| NusG antitermination factor [Eubacterium cellulosolvens 6]
          Length = 174

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +    L+  + E+ +P E VV V+ G K   +++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVKKQVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  +M    ++ +++T  V GF+G+               +             +
Sbjct: 63  PGYVLVHMIMNKDNWYVVRNTRGVTGFVGSNPQEPVPLSPAEMQPLG----VGSEEKMVI 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             E+G++V V  GP+    G +  +++ K  V + V +FGR TPVE+ + +V K+
Sbjct: 119 DLEIGDQVVVIGGPWKDSEGEITAINQSKQTVTINVEMFGRATPVEIGFAEVRKV 173


>gi|329944007|ref|ZP_08292275.1| transcription termination/antitermination factor NusG [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328531208|gb|EGF58054.1| transcription termination/antitermination factor NusG [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 321

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 32/208 (15%)

Query: 1   MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56
           M+    +WY++  YS  E++    I  R     ++  + + T+P E V+ ++   +K   
Sbjct: 114 MSALPGQWYVLHTYSGYERRVATDIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 173

Query: 57  ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
            R   PGYV ++  + D       + TIKDTP V GF+G   NP P+T  E    +    
Sbjct: 174 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 233

Query: 112 AAVQRPV-----------------------SSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
             +                             V FEVGE V V+DGPF S    +  +  
Sbjct: 234 EEIAAKETAAVEATAPETGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHP 293

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E  ++ V + +FGR TP EL++ QV KI
Sbjct: 294 ETQKLQVLISLFGRDTPAELSFTQVAKI 321


>gi|260588883|ref|ZP_05854796.1| transcription termination/antitermination factor NusG [Blautia
           hansenii DSM 20583]
 gi|331083427|ref|ZP_08332539.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540662|gb|EEX21231.1| transcription termination/antitermination factor NusG [Blautia
           hansenii DSM 20583]
 gi|330404120|gb|EGG83668.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 173

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G K   +++ F
Sbjct: 3   EANWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGEKKQVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T+ EIE +       V+     +
Sbjct: 63  PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEGEIEALGISFTGDVE-----I 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            F  G+ V V+ G +    G+V++++E K  V + V +FGR TPV+L++ +V+
Sbjct: 118 DFTEGDSVVVTGGVWKDTVGVVQSINEAKQIVTINVELFGRETPVDLSFAEVK 170


>gi|227873027|ref|ZP_03991322.1| transcriptional antiterminator NusG [Oribacterium sinus F0268]
 gi|227841102|gb|EEJ51437.1| transcriptional antiterminator NusG [Oribacterium sinus F0268]
          Length = 176

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+   YS  E K    +   +   GL  ++ E+++P + V+ V+ G +  ++++ F
Sbjct: 7   EARWYVAHTYSGYENKVKMDLEKTIDNRGLQDVILEVSVPMQPVIEVKNGVEKKTDKKMF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D+ ++ +++T  V GF+G G  P P+++ EI  +  +      +    V
Sbjct: 67  PGYVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEILTLGYR------KSEVLV 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F  G+ V V  G +    G++  ++++K  V + V +FGR TPVEL+Y +V+K+
Sbjct: 121 DFAEGDTVSVVSGAWKDTVGVITEINDQKKTVTINVEMFGRDTPVELSYGEVQKL 175


>gi|303237461|ref|ZP_07324026.1| transcription termination/antitermination factor NusG [Prevotella
           disiens FB035-09AN]
 gi|302482281|gb|EFL45311.1| transcription termination/antitermination factor NusG [Prevotella
           disiens FB035-09AN]
          Length = 181

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
             +WY+++  S  E K  E I   L   + L   V E+ +P+E   S+R G++V +E+  
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYIDAELRQNAKLAERVFEVLLPTESHASLRNGKRVVTEKLS 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++A+M  +V  T++  P V+GFLG    P+PV  +E+  ++  VE      V  
Sbjct: 65  LPGYVLVEAIMNSEVASTLRFMPNVLGFLGGVAEPTPVRQAEVNRLLGNVEDTALEEVQD 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 IPYTVGESVKVTDGPFSGFHGIIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 179


>gi|86134005|ref|ZP_01052587.1| transcriptional antitermination factor NusG [Polaribacter sp.
           MED152]
 gi|85820868|gb|EAQ42015.1| transcriptional antitermination factor NusG [Polaribacter sp.
           MED152]
          Length = 182

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+     E K    I   +SR GL   V ++ +P+E+VV +R G+KVN ER +FP
Sbjct: 6   MKWYVVRAIGGQENKVKNYIETEISRVGLSDYVNQVIVPTEKVVQIRNGKKVNRERVYFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119
           GY++++A ++ +V H IK    VIGFLG   G  P P+  SE+  ++ +V+  +VQ    
Sbjct: 66  GYIMVEANLSGEVPHVIKAITGVIGFLGEVKGGEPVPMRKSEVNRMLGKVDELSVQDENI 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ + VGE V V DGPF  F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI
Sbjct: 126 AIPYNVGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 182


>gi|206900373|ref|YP_002251089.1| transcription termination/antitermination factor NusG [Dictyoglomus
           thermophilum H-6-12]
 gi|206739476|gb|ACI18534.1| transcription termination/antitermination factor NusG [Dictyoglomus
           thermophilum H-6-12]
          Length = 176

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
            P+W++V   +  E K    +  ++  + L+  V EI +P E+V++V+ G+K    ++ F
Sbjct: 3   EPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+ V  + V   I++T  V GF+GT   PS +   E   I   +E    RP   V
Sbjct: 63  PGYLFIRMVEDEDVIRLIRNTTGVTGFVGTPGRPSTLNPQEEHWIKRFLEQKEIRPELKV 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + G+RV +  GPF  + G V  V  EK  V V + IFGR TP E+ + QVEK
Sbjct: 123 --KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVKVLLSIFGRETPTEIDHTQVEK 174


>gi|134096333|ref|YP_001101408.1| transcription antitermination protein [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + ++  R++R+G+     +I +P+E V+ V+ G+K  SERRFFPGYVL++  MTD+ +H 
Sbjct: 1   MRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFPGYVLVEMEMTDETWHL 60

Query: 79  IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +K+T KV GF+G     P+P+   E++ IM Q++  V++P   V +EVGE V + DGPF 
Sbjct: 61  VKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKVLYEVGEMVRIKDGPFT 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+
Sbjct: 121 DFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 159


>gi|295397927|ref|ZP_06807984.1| transcription termination/antitermination factor NusG [Aerococcus
           viridans ATCC 11563]
 gi|294973812|gb|EFG49582.1| transcription termination/antitermination factor NusG [Aerococcus
           viridans ATCC 11563]
          Length = 184

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61
             WY++  Y+  E K  +++  R++   ++  +  + +P E  V   + G++   + + F
Sbjct: 9   KEWYVIHTYAGYENKVKQNLEMRITSMDMEDYIYRVIVPEEEHVEKTKSGKENIVKIKNF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++ +M+D+ +  +++TP V GFLG+    S  T    + + N + +  +      
Sbjct: 69  PGYVLVEMIMSDEAWFVVRNTPGVTGFLGSHGQGSKPTPLLPDEVRNILSSLGEGGRNRD 128

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F++ E V V DG F    G V+ +D E  ++ + V +FGR T  E+ Y+QV+K
Sbjct: 129 ISFDIDEVVKVIDGAFDGMEGRVQEIDAEHGKLKLTVEMFGRETLAEVDYDQVDK 183


>gi|282896127|ref|ZP_06304153.1| NusG antitermination factor [Raphidiopsis brookii D9]
 gi|281199045|gb|EFA73920.1| NusG antitermination factor [Raphidiopsis brookii D9]
          Length = 209

 Score =  145 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    V +RK   +  +E + 
Sbjct: 24  EARWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKV 83

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVL++ +M+D  +  +K+T  VI F+G  +                          +
Sbjct: 84  FPGYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSSRSRGHVKPVPLSNSEVERIFKQ 143

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q PV  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +N
Sbjct: 144 TTEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203

Query: 172 QVEK 175
           QV+K
Sbjct: 204 QVQK 207


>gi|254431017|ref|ZP_05044720.1| transcription termination/antitermination factor NusG [Cyanobium
           sp. PCC 7001]
 gi|197625470|gb|EDY38029.1| transcription termination/antitermination factor NusG [Cyanobium
           sp. PCC 7001]
          Length = 231

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+D+ + EI IP    V ++K   + ++E + FP
Sbjct: 48  RWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPGVKLKKDGSRQSTEEKVFP 107

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  E            P P++  E++ I  +  
Sbjct: 108 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEERRATARARGHIKPRPLSRQEVDRIFKRAA 167

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++PV  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL + 
Sbjct: 168 E--KKPVVKVDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFA 225

Query: 172 QVEK 175
           Q+ K
Sbjct: 226 QISK 229


>gi|87300788|ref|ZP_01083630.1| transcription antitermination protein NusG [Synechococcus sp. WH
           5701]
 gi|87284659|gb|EAQ76611.1| transcription antitermination protein NusG [Synechococcus sp. WH
           5701]
          Length = 226

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 14/187 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERR 59
           M  RWY VQV S+CEKK   ++  R    G+D  + EI IP    V ++K     + E +
Sbjct: 40  MVARWYAVQVASSCEKKVKATLEQRAITLGVDSRILEIEIPQTPAVKLKKDGSRQAAEEK 99

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMN 108
            FPGYVL++ ++ +     ++ TP VI F+G  E            P P++  E++ I  
Sbjct: 100 VFPGYVLVRMMLDEDTMMAVRSTPNVINFVGQEERRSTGRARGHIKPRPLSRQEVDRIFK 159

Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           +     ++PV  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL
Sbjct: 160 RAAE--KKPVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVEL 217

Query: 169 AYNQVEK 175
            + Q+ K
Sbjct: 218 EFAQISK 224


>gi|311739242|ref|ZP_07713079.1| transcription antitermination protein NusG [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305668|gb|EFQ81734.1| transcription antitermination protein NusG [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 306

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + E+ +P E+V+  + G+K   +R+  PG
Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++A + D  +  I++TP V  F+G   N +PV   ++   +                
Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230

Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +    +    +  FEVGE V +  GP A+ +  +  +D E  ++   V IFG
Sbjct: 231 AEGEQVVAMPEKEEAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL+  ++E+I
Sbjct: 291 RETPVELSPTEIERI 305


>gi|288573182|ref|ZP_06391539.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568923|gb|EFC90480.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 184

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 103/178 (57%), Gaps = 4/178 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYIVQ Y+  E K   ++  R++  G++  + ++ +P E  V V+ G+     ++ FP
Sbjct: 7   KKWYIVQTYAGYENKVKANLEQRIATMGMEDKIFDVLVPVEEKVVVKDGKSKKVTKKLFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPV 118
            YVL++ VM D+ ++ ++ TP V GF+G+G +P P++D E++ IM+++         RPV
Sbjct: 67  SYVLVEMVMEDQPWYVVRHTPGVTGFVGSGNHPIPLSDREVDDIMSKIGLSGSKKNNRPV 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +  + G+ + V  GPF    G +  V  EK +V   V +FGR T VE+ Y +++K+
Sbjct: 127 FEMDLKKGDVIKVKSGPFEGAVGPIIEVLPEKGKVKFSVSVFGRDTLVEIDYIEIDKL 184


>gi|160881812|ref|YP_001560780.1| NusG antitermination factor [Clostridium phytofermentans ISDg]
 gi|160430478|gb|ABX44041.1| NusG antitermination factor [Clostridium phytofermentans ISDg]
          Length = 172

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+   WY+V  YS  E K   +I   +    L   + E+++P + V+ V+ G K   +++
Sbjct: 1   MSDANWYVVHTYSGYENKVKANIEKTIENRKLQDQILEVSVPLQDVIEVKNGVKKKVQKK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL+  +M D  ++ +++T  V GF+G G  P P+TD E++ +       +++   
Sbjct: 61  MFPGYVLLNMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDFEMKSM------GIKKDEM 114

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            + F VG+ V V  G + +  G++K ++E K  V + + +FGR TPVE+++  V 
Sbjct: 115 VIDFAVGDTVTVVSGVWENTQGVIKAINEHKQIVTINIDMFGRETPVEISFTDVR 169


>gi|282878708|ref|ZP_06287476.1| transcription termination/antitermination factor NusG [Prevotella
           buccalis ATCC 35310]
 gi|281299099|gb|EFA91500.1| transcription termination/antitermination factor NusG [Prevotella
           buccalis ATCC 35310]
          Length = 181

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++  S  E K  E I   +  + L    V+++ IP E++ ++R G++V  E+   
Sbjct: 6   KNWYVLRAVSGKEAKLKEYIEAEIKHNTLLQQHVSQVLIPMEKLATLRNGKRVEKEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ ++A +   V HT++  P  +GFLG  +NPSPV  SEI  ++ + E         V
Sbjct: 66  PGYIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGEAEDTEIMNGIEV 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYEVDEVVKVTDGPFSGFSGVIEEVNAEKHKLKVLVKIFGRKTPLELSFMQVEK 179


>gi|86608696|ref|YP_477458.1| transcription antitermination protein NusG [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557238|gb|ABD02195.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 221

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
           RWY VQV S CE K   ++  R +   +   + E+ IP      + R G++   E + FP
Sbjct: 38  RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 97

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEAA 113
           GYVL++  M D  +  +K TP VI F+GT E  +                          
Sbjct: 98  GYVLVRMDMNDDTWMVVKTTPNVINFVGTEEKRAYGRGRGHVTPRPLSQSEVQRIFSSVE 157

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           V+     +    G+R+ V  GPF  F G V  V  E+ ++   + IFGR TPVEL + QV
Sbjct: 158 VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVEVSPERGKLKALISIFGRDTPVELEFGQV 217

Query: 174 EKIV 177
            K V
Sbjct: 218 RKEV 221


>gi|227487148|ref|ZP_03917464.1| transcription antitermination protein NusG [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227541685|ref|ZP_03971734.1| transcription antitermination protein NusG [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227092806|gb|EEI28118.1| transcription antitermination protein NusG [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227182500|gb|EEI63472.1| transcription antitermination protein NusG [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 255

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI+Q YS  E K   ++  R     +D  + +I +P E V  +R G+K   +++  PGY
Sbjct: 66  WYIIQTYSGYENKVKTNLTQRAENLEVDEYIHDIVVPVEEVTEMRDGKKKIVKKKLLPGY 125

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114
           VL++  M D V+  ++ TP V  F+G     +PV   ++   +   +A            
Sbjct: 126 VLVRMEMNDSVWSVVRGTPGVTSFVGNEGQATPVKPKDVAKFLMPQQAVEEQAADAEGDT 185

Query: 115 -------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                  ++    V FEVGE V +  G  A+ +  + ++D +  ++H  V IFGR TPVE
Sbjct: 186 VVAAPAAEKKPVEVDFEVGESVTILSGALATVSATISDIDRDSGKLHALVSIFGRDTPVE 245

Query: 168 LAYNQVEKI 176
           L ++QVEKI
Sbjct: 246 LTFDQVEKI 254


>gi|330718911|ref|ZP_08313511.1| transcription antitermination protein nusG [Leuconostoc fallax KCTC
           3537]
          Length = 188

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 8/180 (4%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++V  YS  E K   ++  R    G+   +  I +P + V +++ G    +    F
Sbjct: 6   EKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIKDGEAKQTIENDF 65

Query: 62  PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGTGENPSPVT--DSEIEHIMNQVEAA 113
           PGYVL++        MTD+ ++ +++TP V GFLG+    S       E   ++ +    
Sbjct: 66  PGYVLVEMATPQEGNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVELLLRRMGM 125

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           V R    +  E+G+ V +  GPF+   GIV ++D EK  +   V +FGR TP EL++  +
Sbjct: 126 VTRETVDLDVEIGDAVKIIAGPFSGMEGIVTSIDPEKQAIEATVEVFGRETPTELSFTDI 185


>gi|218283698|ref|ZP_03489659.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989]
 gi|218215687|gb|EEC89225.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989]
          Length = 181

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 101/177 (57%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V  Y   E +  E++  R+   GL+  + +I +  E+ +  + G+ V      F 
Sbjct: 6   KEWYVVNTYVGQENRVKENLERRIKTMGLEDFLFQIVVAEEKEIEYKNGKPVEKTHNLFS 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+L++ +MTD+ ++ +++TP V GF+G+      P PV   E++ ++ ++    Q    
Sbjct: 66  GYLLVQMIMTDEAWYIVRNTPGVTGFIGSSGKGAKPFPVAQEEVDAVLRRLGR--QDVNV 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG+RV +++G F +  G ++++DEEK    V +++FGR TP E+ Y  ++K+
Sbjct: 124 QVDFEVGDRVEITNGAFKNSEGTIESMDEEKKEATVLLILFGRETPTEIPYMDLKKV 180


>gi|260655340|ref|ZP_05860828.1| transcription termination/antitermination factor NusG [Jonquetella
           anthropi E3_33 E1]
 gi|260629788|gb|EEX47982.1| transcription termination/antitermination factor NusG [Jonquetella
           anthropi E3_33 E1]
          Length = 185

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 97/174 (55%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+ VQ YS  E K   ++  R++    +  +  + +P E VV V+ G+     R+ FP 
Sbjct: 12  QWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPS 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSVF 122
           YVL++ +M D+ ++ ++ TP V GF+G G +P P++D E+  ++ +V     + P   V 
Sbjct: 72  YVLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVE 131

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +VG+ V V  GPF    G+V +V+    +V   + +FGR T  E+ + ++E++
Sbjct: 132 CQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185


>gi|217967757|ref|YP_002353263.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724]
 gi|217336856|gb|ACK42649.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724]
          Length = 176

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
            P+W++V   +  E K    +  ++  + L+  V EI +P E+V++V+ G+K    ++ F
Sbjct: 3   EPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+ +  + V   I++T  V GF+GT   PS +   E   I   +E    RP   V
Sbjct: 63  PGYLFIRMIEDEDVIRMIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKV 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + G+RV +  GPF  + G V  V  EK  V V + IFGR TP E+ + QVEK
Sbjct: 123 --KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174


>gi|330812087|ref|YP_004356549.1| transcription antitermination protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380195|gb|AEA71545.1| transcription antitermination protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 159

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/159 (47%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P     FE GE V V+DGPFA
Sbjct: 61  VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159


>gi|320527651|ref|ZP_08028825.1| transcription termination/antitermination factor NusG
           [Solobacterium moorei F0204]
 gi|320131972|gb|EFW24528.1| transcription termination/antitermination factor NusG
           [Solobacterium moorei F0204]
          Length = 196

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 100/177 (56%), Gaps = 6/177 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
           RWY+V  Y+  E +  E++  R+   G+   +  I +  E    + + G+  + +   FP
Sbjct: 19  RWYVVNTYAGHENRVKENLEKRVETMGIQDSLFRIVVAEETETVIGKDGKPKDVKTNVFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+ ++  MTD+ ++ +++TP V GF+G    G  P PV   E+E I+ ++  + ++   
Sbjct: 79  GYLFVEMKMTDEAWYVVRNTPGVTGFIGSSGGGAKPFPVAPDEMEAILRRIGQSDKK--I 136

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ FE+G+ V +  GPF+   G V +++++    +V +++FGR TP ++ Y  +EK+
Sbjct: 137 SIDFEIGDTVKILAGPFSGMEGRVASLNDQTQTANVLIMLFGRETPTDINYGDLEKV 193


>gi|317057218|ref|YP_004105685.1| NusG antitermination factor [Ruminococcus albus 7]
 gi|315449487|gb|ADU23051.1| NusG antitermination factor [Ruminococcus albus 7]
          Length = 175

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 4/174 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K  ++I   +    L  L+ E+ IP E V  ++  + V +E++ F
Sbjct: 4   EAKWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVRIPMETVTEIKGEKTVEAEKKLF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K V+TD  ++ +++T  V GF+G G  P P++D E+E     +   V       
Sbjct: 64  PSYVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDREVEA----LGVDVGTQTVRT 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              VG+ V +  G F   +G V ++D E +   V V +FGR T V L   Q+ K
Sbjct: 120 DIAVGDDVIMVGGSFDGMSGTVSSLDLENAAADVTVSMFGRETTVTLPLTQLRK 173


>gi|154484467|ref|ZP_02026915.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC
           27560]
 gi|149734315|gb|EDM50232.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC
           27560]
          Length = 172

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L   + E+++P++ VV ++ G +  SE++ F
Sbjct: 3   EANWYVVHTYSGYENKVKTTIEQTIENRKLHDQILEVSVPTQEVVELKNGVRKVSEKKLF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+TD+E+      +   ++     V
Sbjct: 63  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDTEM------LSLGIKNEKVEV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F+ G+ + V  G ++   G+VK +DE +  V + V +FGR TPVEL + +V+K+
Sbjct: 117 DFKEGDMIAVIGGVWSGTAGVVKRIDENRQTVTINVDMFGRETPVELNFTEVKKM 171


>gi|313884771|ref|ZP_07818526.1| transcription termination/antitermination factor NusG [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620032|gb|EFR31466.1| transcription termination/antitermination factor NusG [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 181

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 1/173 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++  YS  E K  E+I  R     ++  +  + +P E V  V+ G + +   + FP
Sbjct: 5   KEWYVLHTYSGYENKVKENIDLRKESMDMEDNIFRVEVPEEEVTEVKDGERTSKVEKTFP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121
           GYVL++ +M+D  +  +++TP V GF+G+    S       E +   +     +P    +
Sbjct: 65  GYVLVEMIMSDDAWFVVRNTPGVTGFVGSHGAGSKPAPLLEEEVEAILGDRPMKPAPVEL 124

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              VG+ V + DGPFA+F+G ++ + +E  R+ V + + GR T  EL + QV 
Sbjct: 125 DVAVGDYVDIVDGPFANFSGQIEEISQETQRLKVVLEMMGRETVTELDFAQVR 177


>gi|193213527|ref|YP_001999480.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327]
 gi|193087004|gb|ACF12280.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327]
          Length = 191

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 102/173 (58%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY +++YS  E+K  E I     R GL   + ++ IP ER V V+ G+K +  +  FPG
Sbjct: 17  HWYALRIYSGHERKVKEGIEMEAERHGLVDKIKQVYIPYERFVEVKNGKKRSLTKNAFPG 76

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++AV+  +  + I D P V+GFLG  +NP+P+   E+E I+    A   R V    F
Sbjct: 77  YVLLEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPESAVEHRAVVEAPF 136

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +VG+ V V DGPF+S  GIV  V  E+ +V V +  FGR TP EL ++QV+ +
Sbjct: 137 KVGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKSV 189


>gi|189218811|ref|YP_001939452.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4]
 gi|189185669|gb|ACD82854.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4]
          Length = 201

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY + V S  E+K  +++  R+    +  LV E+ IP ERV  VRKG+++   R+ +P
Sbjct: 21  MQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYP 80

Query: 63  GYVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           GYV ++  + D       + ++ +++T  VIGF   G+NP P+   ++E ++ Q++    
Sbjct: 81  GYVFLQIQLRDSSGKLIERAWYFVRETSGVIGFA-DGDNPLPMPREQVEGMLRQIQERTS 139

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             +    F VG+RV V DGPF +  G+++ VD E+ ++ V V IFGR TPVEL Y QVEK
Sbjct: 140 SALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199


>gi|149177085|ref|ZP_01855693.1| transcription antiterminator NusG [Planctomyces maris DSM 8797]
 gi|148844150|gb|EDL58505.1| transcription antiterminator NusG [Planctomyces maris DSM 8797]
          Length = 194

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 2/177 (1%)

Query: 2   TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
             R WY+++V SN EK   +++   + R GL+    EI IP+E+VV  + G+K   ER+ 
Sbjct: 18  EKRLWYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERKL 77

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119
           +PGY++I+  + D  ++ ++ T  V  F G    P P+ + EI  ++ + E+  + P   
Sbjct: 78  YPGYLMIQVELNDDSWYLVRSTNGVGDFTGAAGKPIPMQEHEIARMLGREESKEETPVKI 137

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + F+VG+ V V D  F  F G +  VDE   +V V + IF R TP EL Y Q+EK+
Sbjct: 138 KLDFQVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194


>gi|300742100|ref|ZP_07072121.1| transcription termination/antitermination factor NusG [Rothia
           dentocariosa M567]
 gi|300381285|gb|EFJ77847.1| transcription termination/antitermination factor NusG [Rothia
           dentocariosa M567]
          Length = 255

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    I  R+     +  + E+ +P E VV  +   K    R   PGY
Sbjct: 75  WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 134

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
           VL++  +TD  +  ++ TP V GF+G    NP P+   E+  ++  V    Q        
Sbjct: 135 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEDQQSKGLPTP 194

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +PV    + VGE V V  GPF   +  +  +  E  +V   + +F R TPV L +NQ+EK
Sbjct: 195 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 254

Query: 176 I 176
           I
Sbjct: 255 I 255


>gi|325678944|ref|ZP_08158542.1| transcription termination/antitermination factor NusG [Ruminococcus
           albus 8]
 gi|324109448|gb|EGC03666.1| transcription termination/antitermination factor NusG [Ruminococcus
           albus 8]
          Length = 175

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 4/174 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K  ++I   +    L  L+ E+ IP E V  ++  + V +E++ F
Sbjct: 4   EAKWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVKIPMETVTEIKGTKTVEAEKKLF 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YVL+K V+TD  ++ +++T  V GF+G G  P P++D E+E     +           
Sbjct: 64  PSYVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDKEVEA----LGVDTGTQTVQT 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             EVG+ V +  G F   +G V  +D E +   V V +FGR T V L   Q+ K
Sbjct: 120 NIEVGDDVVMVGGSFDGMSGTVTALDLENAAADVTVSMFGRETSVTLPLTQLRK 173


>gi|300172658|ref|YP_003771823.1| transcription antitermination protein NusG [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887036|emb|CBL91004.1| Transcription antitermination protein NusG [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 209

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++V  YS  E K   ++  R    G+   +  I +P + V +++ G    S    F
Sbjct: 23  EKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKTSVENDF 82

Query: 62  PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112
           PGYVL++        MTD+ ++ +++TP V GFLG+   G  P+ +   E++ +M ++  
Sbjct: 83  PGYVLVEMATPHDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRM-G 141

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            V R V  +  EVG+ V +  GPF+     V  VD EK  +   V +FGR TP EL +  
Sbjct: 142 MVTREVVDLAVEVGQTVKIITGPFSGMEATVTMVDVEKQTLEATVEVFGRETPTELDFAD 201

Query: 173 VEKIV 177
           V+ ++
Sbjct: 202 VDTVL 206


>gi|325068005|ref|ZP_08126678.1| NusG antitermination factor [Actinomyces oris K20]
          Length = 281

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 32/208 (15%)

Query: 1   MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56
           M+    +WY++  YS  E++    I  R     ++  + + T+P E V+ ++   +K   
Sbjct: 74  MSALPGQWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 133

Query: 57  ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
            R   PGYV ++  + D       + TIKDTP V GF+G   NP P+T  E    +    
Sbjct: 134 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 193

Query: 112 AAVQR-----------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
             +                          V  V FEVGE V V+DGPF S    +  +  
Sbjct: 194 EELAAKEAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATIAEIHP 253

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E  ++ V + +FGR TP EL++ QV KI
Sbjct: 254 ETQKLQVLISLFGRDTPAELSFTQVAKI 281


>gi|242309997|ref|ZP_04809152.1| transcription antitermination protein nusG [Helicobacter pullorum
           MIT 98-5489]
 gi|239523294|gb|EEQ63160.1| transcription antitermination protein nusG [Helicobacter pullorum
           MIT 98-5489]
          Length = 176

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY +Q Y   E+     I   +    L+  +T+I +P+E ++ V+  +K  SER  
Sbjct: 1   MALYWYAIQTYFGSEQAVKRGIENLVKEHHLEERLTDIVVPTEDIIEVKNNKKKISERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV I+  +   ++HTI+  PKV  F+G  + P+P+++++I HI+ +V+     P   
Sbjct: 61  YPGYVFIRVDLDTALWHTIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FE GE V + +GPFA+F G V+  D E  ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 IIFEAGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176


>gi|213964871|ref|ZP_03393070.1| transcription antitermination protein NusG [Corynebacterium
           amycolatum SK46]
 gi|213952407|gb|EEB63790.1| transcription antitermination protein NusG [Corynebacterium
           amycolatum SK46]
          Length = 294

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 23/195 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63
           WYI+Q YS  E K   ++  R    G+D  + E+ +P E V   +   +K   +R+  PG
Sbjct: 99  WYIIQCYSGYENKVKTNLEMRAQTMGVDEQIHEVIVPVEEVEERKDDGKKKIVKRKLLPG 158

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  + D  +  ++DTP V  F+G+   PS V   E+   +                
Sbjct: 159 YVLVRMSLDDPSWSVVRDTPGVTSFVGSEGQPSKVKIREVAKFLMPKETITADAAEEAAN 218

Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                        ++   ++ +EVGE V +  GPFAS    +  +D +  R+   V IFG
Sbjct: 219 ADGELAVAAAPQAEKKAVAIDYEVGESVTILSGPFASVAATISEIDPDTGRMKALVSIFG 278

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL  ++VEK+
Sbjct: 279 RETPVELGIDEVEKL 293


>gi|224418583|ref|ZP_03656589.1| transcription antitermination protein NusG [Helicobacter canadensis
           MIT 98-5491]
 gi|253826866|ref|ZP_04869751.1| transcription antitermination protein NusG [Helicobacter canadensis
           MIT 98-5491]
 gi|313142111|ref|ZP_07804304.1| transcription antitermination protein nusg [Helicobacter canadensis
           MIT 98-5491]
 gi|253510272|gb|EES88931.1| transcription antitermination protein NusG [Helicobacter canadensis
           MIT 98-5491]
 gi|313131142|gb|EFR48759.1| transcription antitermination protein nusg [Helicobacter canadensis
           MIT 98-5491]
          Length = 176

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY +Q Y   E+     I   +    L+  +T+I +P+E ++ V+  +K  SER  
Sbjct: 1   MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV IK  +   ++H I+  PKV  F+G  + P+P+++++I HI+ +V+     P   
Sbjct: 61  YPGYVFIKVDLDTALWHKIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V FE GE V + +GPFA+F G V+  D E  ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 VIFETGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176


>gi|331001619|ref|ZP_08325142.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413340|gb|EGG92707.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 177

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 95/175 (54%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +W++   YS  E K    I   +   GL   + E+T+P E ++ V+ G + +S+++ F
Sbjct: 3   EAQWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI   M D+ ++ +++T  V GF+G G  P P+T+ E+  +    ++        V
Sbjct: 63  PGYVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTNDELVALGYSGDSTKPEAKLHV 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + G+ V V  G +    G++  V+E++  V + V +FGR T VEL + +V+K+
Sbjct: 123 DLKEGDMVTVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVKKM 177


>gi|226942765|ref|YP_002797838.1| transcription termination/antitermination factor NusG [Azotobacter
           vinelandii DJ]
 gi|226717692|gb|ACO76863.1| transcription termination/antitermination factor NusG [Azotobacter
           vinelandii DJ]
          Length = 159

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLIERVKLAGMEDQFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           IKDTP+V+GF+G   + P+P+TD E E I+ +V  +  RP     FE GE V V DGPFA
Sbjct: 61  IKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADSGDRPKPKTLFEPGEVVRVIDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK
Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 158


>gi|191639230|ref|YP_001988396.1| Transcription antitermination protein NusG [Lactobacillus casei
           BL23]
 gi|190713532|emb|CAQ67538.1| Transcription antitermination protein NusG [Lactobacillus casei
           BL23]
          Length = 184

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E K   ++  R S   +D  +  + +P E     + G++    ++ F
Sbjct: 9   EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ +  +++TP V GF+G+   G  P+P+   E+ ++++ +   +    
Sbjct: 69  PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMG--MSTRH 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + V F+VGE V + DG F   +G V  VD+EK ++ V   +F R    EL ++QV+K+
Sbjct: 127 NDVEFDVGEPVTIIDGDFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184


>gi|167748127|ref|ZP_02420254.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662]
 gi|317472342|ref|ZP_07931669.1| transcription termination/antitermination factor NusG [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652119|gb|EDR96248.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662]
 gi|316900184|gb|EFV22171.1| transcription termination/antitermination factor NusG [Anaerostipes
           sp. 3_2_56FAA]
          Length = 182

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+V  YS  E K   +I   +    L   + E+ +P + V  ++ G K    ++ FPG
Sbjct: 5   NWYVVHTYSGYENKVKANIEKTIENRKLQDQILEVRVPLQDVTELKNGVKKQVSKKMFPG 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS 119
           YVLI  VM D  ++ +++T  V GF+G G  P P+T +E++ +   V    E   ++   
Sbjct: 65  YVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGISVGGTNEETPKKEKI 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +  EVG+ + V+ G +      V  V+E K  V +EV +FGR T VE+ +  ++K
Sbjct: 125 DIDVEVGDIIVVTSGAWEGTTSAVTVVNEHKQTVTIEVEMFGRATSVEIDFLDIKK 180


>gi|311748526|ref|ZP_07722311.1| transcription termination/antitermination factor NusG [Algoriphagus
           sp. PR1]
 gi|126577042|gb|EAZ81290.1| transcription termination/antitermination factor NusG [Algoriphagus
           sp. PR1]
          Length = 185

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 7/181 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++V +  EKK    +   +SR  +D  + E+ IPSE+V  +R G+K   ER FF
Sbjct: 3   EHKWYVLRVVAGQEKKTKTYLDNEISRQEIDEFIPEVLIPSEKVYEMRNGKKRVRERNFF 62

Query: 62  PGYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEAAVQ 115
           PGYVL+ A +   +  H I   P VIGFLG+ +      P P+  SE+  I+ +VE   +
Sbjct: 63  PGYVLVNADLSNGEANHVITSIPGVIGFLGSSQGGASKTPEPLRQSEVNRILGKVEEIDE 122

Query: 116 -RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                   F VGE V V DGPF+ F G ++ V ++K +++V V IFGR TPVEL + QVE
Sbjct: 123 FAEKLDTPFIVGEAVKVMDGPFSGFTGTIEEVFDDKKKLNVMVKIFGRNTPVELNFIQVE 182

Query: 175 K 175
           K
Sbjct: 183 K 183


>gi|237753301|ref|ZP_04583781.1| transcription antitermination protein nusG [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375568|gb|EEO25659.1| transcription antitermination protein nusG [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 176

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY +Q Y   E+     I   +    L+  +T+I +P+E ++ V+  +K  SER  
Sbjct: 1   MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV +K  +   ++HTI+  PKV  F+G  + P+P+++++I HI+ +V+     P   
Sbjct: 61  YPGYVFVKVDLDTALWHTIQSLPKVSRFIGESKKPTPLSEADINHIIEKVQNRA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + FE GE V + +GPFA+F GIV+  D E  ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 120 IIFEAGEVVRIIEGPFANFTGIVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176


>gi|254425360|ref|ZP_05039078.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. PCC 7335]
 gi|196192849|gb|EDX87813.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. PCC 7335]
          Length = 218

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 14/185 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
           PRWY VQV S CEKK   ++  R+    L +++ E+ IP    V +RK   + + E + F
Sbjct: 34  PRWYAVQVASGCEKKVKLTLEQRVKTFDLSNVILEVEIPQTPAVKMRKDGSRHSIEEKVF 93

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110
           PGYVLI+  + D  +  +K+TP VI F+G  +            P P++  E++ I  Q 
Sbjct: 94  PGYVLIRMALDDDAWQVVKNTPHVINFVGAEQRRAQGRGRGHVKPMPLSAGEVKRIFKQT 153

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +   Q PV  +    G+++ V  GPF  F G V  V  E+S++   + IFGR TPVEL +
Sbjct: 154 QE--QAPVVKIDMAAGDKITVLSGPFKDFEGEVVEVSPERSKLKALLSIFGRDTPVELEF 211

Query: 171 NQVEK 175
           NQV+K
Sbjct: 212 NQVKK 216


>gi|313900413|ref|ZP_07833906.1| transcription termination/antitermination factor NusG [Clostridium
           sp. HGF2]
 gi|312954475|gb|EFR36150.1| transcription termination/antitermination factor NusG [Clostridium
           sp. HGF2]
          Length = 183

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  Y+  E +  E++  R+   GL   +  + +  E+ +  + G++V      F 
Sbjct: 7   KQWYVVNTYAGHENRVKENLLRRVESMGLQDYLFRVIVAEEKEIEYKNGKEVEKTTNLFS 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+ ++ +MTD+ ++ +++TP V GF+   G G  P PV + E+E I+ ++  + ++   
Sbjct: 67  GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMESILRRLGMSERKVQ- 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + F VG+RV +  G FA+  G V+ + E+     V  ++FGR TP E+ Y ++EK+
Sbjct: 126 -IDFAVGDRVRILSGAFANVEGTVEELHEDSQTAVVLTILFGRETPTEIGYGELEKV 181


>gi|91200655|emb|CAJ73705.1| strongly similar to transcription antitermination protein NusG
           [Candidatus Kuenenia stuttgartiensis]
          Length = 182

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 112/182 (61%), Gaps = 6/182 (3%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W++++V SN E K  +++  R+   G++ L+T + +PSE++  V+ G+K  S+R+ 
Sbjct: 1   MPKEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKI 60

Query: 61  FPGYVLIKAVMTDK------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY++++  + +K      V+ TI++T     F+G    P P+T  E+E +++ ++   
Sbjct: 61  YPGYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQSKPVPMTKYEVEKLLSDLDQKE 120

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +RP + + F  GE+V + +GPF +++GIV+ V     RV V + +FGR TPVEL Y QVE
Sbjct: 121 ERPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180

Query: 175 KI 176
            I
Sbjct: 181 SI 182


>gi|329769657|ref|ZP_08261061.1| transcription termination/antitermination factor NusG [Gemella
           sanguinis M325]
 gi|328838412|gb|EGF88021.1| transcription termination/antitermination factor NusG [Gemella
           sanguinis M325]
          Length = 181

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY++  YS  E K  +++  R+    ++  +  I +P E+   +    +K    R+ F
Sbjct: 7   KEWYVIHTYSGYENKVKDNLEKRVESLNMEDKIFRIVVPEEKETIITPTGKKKEVNRKTF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL++ VMTD  +  +++TP V GF+G+    S  +    E I   ++      V  +
Sbjct: 67  PGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSSVVDI 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             E+G+ V V  GPF   +G V N+D    +  V + + GR T VEL    +EK
Sbjct: 127 DIELGDHVRVISGPFVDMDGKVVNIDTNNFKADVMIELMGRETKVELELYNIEK 180


>gi|320333435|ref|YP_004170146.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211]
 gi|319754724|gb|ADV66481.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211]
          Length = 190

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 14/189 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58
           M+  WY V  Y   E +  +++  R     +    + ++  P+E  V +++G +K   +R
Sbjct: 1   MSIEWYAVHTYVGQEDRVEDNLIKRARAYSMYGLKIFQVLQPTEEAVELKEGGKKETVKR 60

Query: 59  RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           + FPGYV ++  + D+         +  ++ TP V GF+GT   P P++  E++ ++  V
Sbjct: 61  KMFPGYVFVQMDIEDEHSPGELGESWEVVRGTPGVTGFVGTTTRPVPLSPEEVQRLLASV 120

Query: 111 ----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +A    P   V F+ G+ V V+ GPFA F+G+V  V+  +++V V V IFGR TPV
Sbjct: 121 GVAAKATEVAPRIKVNFKEGDMVRVTSGPFADFSGVVSEVNAAQAKVKVLVSIFGRETPV 180

Query: 167 ELAYNQVEK 175
           EL ++QV +
Sbjct: 181 ELDFSQVSR 189


>gi|326773946|ref|ZP_08233228.1| transcription termination/antitermination factor NusG [Actinomyces
           viscosus C505]
 gi|326636085|gb|EGE36989.1| transcription termination/antitermination factor NusG [Actinomyces
           viscosus C505]
          Length = 300

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 32/208 (15%)

Query: 1   MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56
           M+    +WY++  YS  E++    I  R     ++  + + T+P E V+ ++   +K   
Sbjct: 93  MSALPGQWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 152

Query: 57  ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
            R   PGYV ++  + D       + TIKDTP V GF+G   NP P+T  E    +    
Sbjct: 153 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 212

Query: 112 AAVQR-----------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
             +                          V  V FEVGE V V+DGPF S    +  +  
Sbjct: 213 EEIAAKEAAAAEVTAPESGSGTQIAAGGQVFEVAFEVGESVIVTDGPFESLPATIAEILP 272

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E  ++ V + +FGR TP EL++NQV KI
Sbjct: 273 ETQKLQVLISLFGRDTPAELSFNQVAKI 300


>gi|325954358|ref|YP_004238018.1| NusG antitermination factor [Weeksella virosa DSM 16922]
 gi|323436976|gb|ADX67440.1| NusG antitermination factor [Weeksella virosa DSM 16922]
          Length = 180

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+  S  E K    I        L   + ++ +P E+V  +R G+K   E+  FP
Sbjct: 4   KKWYVVKTVSGQELKVKNYIENEAQYHKLTDYIGQVVVPMEKVFQIRNGKKYQKEKVHFP 63

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
           GYV+I+A +  +V H +K+ P VI FL    G +P P+  SE+  ++ +V+        +
Sbjct: 64  GYVMIEASLQGEVPHIVKNIPGVISFLSATKGGDPVPMRQSEVNRMLGKVDELADSIESN 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S+ F+VGE + V DGPF+ F G ++ + E+K ++ V V+IFGR TP+EL + QVEKI
Sbjct: 124 SIPFDVGETIKVIDGPFSGFTGSIEKIHEDKRKLEVMVLIFGRKTPLELNFGQVEKI 180


>gi|227832183|ref|YP_002833890.1| transcription antitermination protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183965|ref|ZP_06043386.1| transcription antitermination protein NusG [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453199|gb|ACP31952.1| transcription antitermination protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 302

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 21/194 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + E+ +P E+ +  + G+K   +R+  PG
Sbjct: 108 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQAIEKKDGKKKVVKRKLLPG 167

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++  + D  +  ++DTP V  F+G   N +PV   ++   +                
Sbjct: 168 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKIRDVAKFLMPNDPTVSPEASAADS 227

Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
                  +         +  FEVGE V +  GP AS +  +  +D E  ++   V IFGR
Sbjct: 228 EGEQVVAMPEKEAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 287

Query: 163 VTPVELAYNQVEKI 176
            TPVEL+  ++E+I
Sbjct: 288 ETPVELSPTEIERI 301


>gi|158336005|ref|YP_001517179.1| transcription antitermination protein NusG [Acaryochloris marina
           MBIC11017]
 gi|158306246|gb|ABW27863.1| transcription termination/antitermination factor NusG
           [Acaryochloris marina MBIC11017]
          Length = 206

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERRFFP 62
            WY VQV S CEKK   ++  RL    +   + +I IP    + VRK       E + FP
Sbjct: 24  HWYAVQVASGCEKKVKHNLEQRLQTLDVADRIVQIEIPQTPTIKVRKDGSRLTGEEKVFP 83

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ D+ +  +K+TP VI F+G  +            P P++ SE+E I  Q +
Sbjct: 84  GYVLVRMILDDETWQVVKNTPNVINFVGAEQQRRYGRGRGHVKPMPLSPSEVERIFRQAQ 143

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              Q PV  V   VG+++ V +GPF  F G V  V  E++++   + IFGR TPVEL +N
Sbjct: 144 E--QEPVVKVDMSVGDKIQVLNGPFKDFEGEVIEVSLERNKLKALLSIFGRDTPVELEFN 201

Query: 172 QVEK 175
           QV K
Sbjct: 202 QVRK 205


>gi|107103787|ref|ZP_01367705.1| hypothetical protein PaerPA_01004858 [Pseudomonas aeruginosa PACS2]
 gi|313111429|ref|ZP_07797233.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           39016]
 gi|310883735|gb|EFQ42329.1| transcription antitermination protein NusG [Pseudomonas aeruginosa
           39016]
          Length = 159

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +KDTP+V+GF+G   + P+P+TD E + I+ +V  +  +P     FE GE V V DGPFA
Sbjct: 61  VKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKPKTLFEPGETVRVIDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159


>gi|291516066|emb|CBK65276.1| transcription antitermination protein nusG [Alistipes shahii WAL
           8301]
          Length = 186

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 7/180 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+     E K  E I   +  + L+  ++++ IP+E+V ++R G+KV+ E+  +P
Sbjct: 6   KQWYVVRAIGGKEGKVKEYIEAEIRHNHLEDYISQVLIPTEKVYTIRNGKKVSKEKVSYP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEA-AVQ 115
           GYVL++A    ++   I++TP V+GFLG  +      N +P+   E+  I+ +V+    Q
Sbjct: 66  GYVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDELNAQ 125

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              + + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 EEENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVEK 185


>gi|313115119|ref|ZP_07800606.1| transcription termination/antitermination factor NusG
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622559|gb|EFQ06027.1| transcription termination/antitermination factor NusG
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 177

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 6/171 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
           WY+V  YS  E K    +   +    L  L+ +I +P E V  + + G++   E + FPG
Sbjct: 10  WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 69

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K VM D  ++ +++T    GF+G    P P++  E+E +        +    +V F
Sbjct: 70  YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM-----GVEKAAPLAVDF 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            VG+ V ++ GP   F G+V+ +D E  +V ++V +FGR TP E+   QVE
Sbjct: 125 NVGDTVQITAGPLEGFMGLVEEIDTENFKVKLKVNMFGRETPAEVEIGQVE 175


>gi|282858393|ref|ZP_06267573.1| transcription termination/antitermination factor NusG [Prevotella
           bivia JCVIHMP010]
 gi|282588841|gb|EFB93966.1| transcription termination/antitermination factor NusG [Prevotella
           bivia JCVIHMP010]
          Length = 181

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
             +WY+++  S  E K  E I  +L   + L   V E+ +P E+  S+R G++V  E+  
Sbjct: 5   EKKWYVLRAISGKEAKVKEYIDAQLRLNTKLAERVFEVLLPMEKHASLRNGKRVIKEKLS 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++A MT  +  T++  P V+GFLG    PSP+  ++I  ++  VE      +  
Sbjct: 65  LPGYVLVQANMTPDIASTLRFMPNVLGFLGGTSEPSPIRQADINRLLGNVEETEVNGMQD 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + VGE V V +GPFA F+G+++ ++ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 VPYSVGESVKVIEGPFAGFHGVIEEINTEKHKLKVMVMIFGRQNPLELSFMQVSK 179


>gi|284928831|ref|YP_003421353.1| transcription antitermination protein NusG [cyanobacterium UCYN-A]
 gi|284809290|gb|ADB94995.1| transcription antitermination protein nusG [cyanobacterium UCYN-A]
          Length = 206

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S CEK+   ++  R+        + +I IP    + VRK   +   E + FP
Sbjct: 23  RWYAVQVASGCEKRVKSNLEQRVQTLDTAGNILQIQIPKAPTIKVRKDGSRQQGEEKVFP 82

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GY+L+K +M D  +  IK TP VI F+G+ +            P P++ SE+E I  Q E
Sbjct: 83  GYILVKMIMDDDTWLVIKSTPNVINFVGSEQRRASGRGRGHVKPLPLSPSEVERIFRQTE 142

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
            +   P+  +  EVG+++ V  GPF  F G V  V  E++++   + IFGR TPVEL +N
Sbjct: 143 RS--EPIIKIDMEVGDKIVVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFN 200

Query: 172 QVEK 175
           QVEK
Sbjct: 201 QVEK 204


>gi|318040711|ref|ZP_07972667.1| transcription antitermination protein NusG [Synechococcus sp.
           CB0101]
          Length = 226

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62
           RWY VQV S+CEKK   ++  R    G+D+ + EI IP    V ++K      +E + FP
Sbjct: 43  RWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPAVKLKKDGSRTSTEEKVFP 102

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 103 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 162

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++PV  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 163 E--KKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 220

Query: 172 QVEK 175
           Q+ K
Sbjct: 221 QISK 224


>gi|226226256|ref|YP_002760362.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca
           T-27]
 gi|226089447|dbj|BAH37892.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca
           T-27]
          Length = 181

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSR---SGLDHLVTEITIPSERVVSVRKGRKVNSER 58
             RWY +Q  S  E K    I  ++        D L+ +  +P+++VV ++ G+KV  ER
Sbjct: 3   EHRWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVER 62

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP- 117
           + FPGYVL++ V +    H I     VI F+G  ++P P+ D E+  ++ Q + A + P 
Sbjct: 63  KIFPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQADPADETPV 122

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + F VG+ V +++GPFA FNG V+ +  +K +V V V +FGR T VEL Y Q+ 
Sbjct: 123 REEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179


>gi|260592783|ref|ZP_05858241.1| transcription termination/antitermination factor NusG [Prevotella
           veroralis F0319]
 gi|260535314|gb|EEX17931.1| transcription termination/antitermination factor NusG [Prevotella
           veroralis F0319]
          Length = 181

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/175 (38%), Positives = 105/175 (60%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
             +WY+++  S  E K  E I  +L     L   V E+ +P E+  ++R G++V  E+  
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYIDAQLRQNDKLAERVFEVLLPMEKHATLRNGKRVVKEKLS 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYVL++A MT  V  T++  P V+GFLG    PSPV  ++I  ++  VE      V  
Sbjct: 65  LPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEETELDEVQD 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V +EVGE V V+DGPF+ F+G+++ ++ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 VPYEVGETVKVTDGPFSGFHGVIEEMNAEKHKLKVMVMIFGRQNPLELSFMQVAK 179


>gi|305433028|ref|ZP_07402184.1| transcription termination/antitermination factor NusG
           [Campylobacter coli JV20]
 gi|304443729|gb|EFM36386.1| transcription termination/antitermination factor NusG
           [Campylobacter coli JV20]
          Length = 184

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q Y+  E     +I   +  +G++  + EI +P+E V+  + G++  SER  +
Sbjct: 10  THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 69

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV     +  +++H I+  PKV  F+G  + P+P+T+ +I  I+ +V      P   +
Sbjct: 70  SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE V +++GPFA+F  IV+  D  +  + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 129 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 184


>gi|295099392|emb|CBK88481.1| transcription antitermination protein nusG [Eubacterium
           cylindroides T2-87]
          Length = 181

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V  Y+  E +  E++  R+   GL+  + +I +  E+ +  + G+ V   +  F 
Sbjct: 6   KEWYVVNTYAGQENRVKENLERRVKTMGLEDSLFQIVVAEEKEIEYKNGKPVEKTKNLFS 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ +MTD+ ++ +++TP V GF+G+      P PV+  EI+ ++ ++    Q    
Sbjct: 66  GYVLVQMIMTDEAWYVVRNTPGVTGFIGSSGKGAKPFPVSQEEIDSVLRRLGR--QDMSV 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG+ V + +G F +  G V+ +D++K    V +++FGR TP ++ Y  ++K+
Sbjct: 124 QVDFEVGDTVEILNGAFKNSEGTVEKMDDDKKEATVLLILFGRETPTDIPYMDLKKV 180


>gi|332178503|gb|AEE14192.1| NusG antitermination factor [Thermodesulfobium narugense DSM 14796]
          Length = 179

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 7/181 (3%)

Query: 1   MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           MT      +WY++   SN EK+  E+I  R  R GL+  +T + IP E+ V +   +K  
Sbjct: 1   MTKANPNLKWYVITTLSNYEKRVEEAILVRAQREGLEDKITRVLIPVEKEVKMIGHQKKE 60

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           S ++ FPGYVL++  + D  ++ ++ TP V GF+ + + P P++  E+E IM  + A   
Sbjct: 61  SSKKVFPGYVLVEMDLDDATWNLVRTTPGVTGFISSKKKPLPLSPEEVEKIM--MYAKSD 118

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +PV  V FE G+ V V+ GPFA   G++  +  EK  V + + +FGR TP E+A  Q+EK
Sbjct: 119 KPVIRVEFEKGQVVRVTAGPFAEQTGVIDEIFPEKGTVRLVINLFGRDTPAEIALTQIEK 178

Query: 176 I 176
           +
Sbjct: 179 V 179


>gi|57504724|ref|ZP_00370778.1| transcription termination/antitermination factor NusG
           [Campylobacter coli RM2228]
 gi|57019380|gb|EAL56078.1| transcription termination/antitermination factor NusG
           [Campylobacter coli RM2228]
          Length = 177

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q Y+  E     +I   +  +G++  + EI +P+E V+  + G++  SER  +
Sbjct: 3   THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV     +  +++H I+  PKV  F+G  + P+P+T+ +I  I+ +V      P   +
Sbjct: 63  SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE V +++GPFA+F  IV+  D  +  + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177


>gi|1709421|sp|P52852|NUSG_STRGB RecName: Full=Transcription antitermination protein nusG
 gi|1213238|emb|CAA65165.1| transcription terminator [Streptomyces galbus]
          Length = 309

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 13/183 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  Y+  E +   ++  R     ++  + +  +P E VV ++ G +   ++   PGY
Sbjct: 127 WYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 186

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112
           VL++  +T++ +  +++TP V GF+G   +P P+T  EI  ++             +   
Sbjct: 187 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAARAEGKPAP 246

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             +  V  + FEVG  V V+DGPFA+    +  +  +  +V   V IFG  TPVEL+++Q
Sbjct: 247 QRKVEVQVLDFEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSFDQ 305

Query: 173 VEK 175
           ++K
Sbjct: 306 IQK 308


>gi|255324702|ref|ZP_05365816.1| transcription antitermination protein NusG [Corynebacterium
           tuberculostearicum SK141]
 gi|255298177|gb|EET77480.1| transcription antitermination protein NusG [Corynebacterium
           tuberculostearicum SK141]
          Length = 306

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 22/195 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + E+ +P E+V+  + G+K   +R+  PG
Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108
           YVL++A + D  +  I++TP V  F+G   N +PV   ++   +                
Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230

Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +         +  FEVGE V +  GP A+ +  +  +D E  ++   V IFG
Sbjct: 231 AEGEQVVAMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL+  ++E+I
Sbjct: 291 RETPVELSPTEIERI 305


>gi|124024464|ref|YP_001018771.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9303]
 gi|123964750|gb|ABM79506.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. MIT 9303]
          Length = 241

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY +QV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 58  RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 117

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E++ I  +  
Sbjct: 118 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKRAA 177

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ +  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 178 E--KKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 235

Query: 172 QVEK 175
           Q+ K
Sbjct: 236 QINK 239


>gi|160941939|ref|ZP_02089264.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435146|gb|EDP12913.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC
           BAA-613]
          Length = 172

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+++P   VV ++ G +  ++++ F
Sbjct: 3   EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T+ E+  +        +     V
Sbjct: 63  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASL-----GFHREEDVLV 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ V V  G +    G +K +++ K  + + V +FGR TPVEL + +V+K+
Sbjct: 118 DFEVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKKM 172


>gi|327399535|ref|YP_004340404.1| NusG antitermination factor [Hippea maritima DSM 10411]
 gi|327182164|gb|AEA34345.1| NusG antitermination factor [Hippea maritima DSM 10411]
          Length = 179

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF-FP 62
           +WY +      E K    +  +L   GL+  V EI +P E V+ ++K  K    ++  +P
Sbjct: 5   KWYAIHTQVGYEDKVKVMLQNKLKEEGLEGEVEEIFVPFEEVIEIKKNNKKEKVKKCLYP 64

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV +KA M+DK+Y+ +K    V GF+G    P P+ + EI  IM +VE++ + P  SV 
Sbjct: 65  SYVFVKARMSDKLYNLVKRMSFVSGFVGYKNEPLPMDEKEIRDIMQRVESSKEAPRLSVS 124

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FE GE+V V DGPFA+F G +  VD +K R+ + + IFGR TPVEL YNQVEK+
Sbjct: 125 FEPGEQVRVLDGPFANFTGTIDEVDVDKGRLRILISIFGRSTPVELNYNQVEKV 178


>gi|15807041|ref|NP_295770.1| transcription antitermination protein NusG [Deinococcus radiodurans
           R1]
 gi|18203424|sp|Q9RSS6|NUSG_DEIRA RecName: Full=Transcription antitermination protein nusG
 gi|6459839|gb|AAF11597.1|AE002041_1 transcription antitermination protein NusG [Deinococcus radiodurans
           R1]
          Length = 190

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 15/190 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58
           M+  WY V  Y   E +  + +  R  R G+    + ++  P E  V +++G +KVN +R
Sbjct: 1   MSIEWYAVHTYVGQEDRVQDQLMDRARRLGMYRTKIFQVLQPEEEAVEIQEGGKKVNVKR 60

Query: 59  RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           + FPGYV ++  + D          +  ++ T  V GF+GT   P P++  E++ ++  V
Sbjct: 61  KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLTSV 120

Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                    + P   V  + G+ V V+ GPFA F+G+V  V+  +++V V V IFGR TP
Sbjct: 121 GVAAQPVVEEAPRIKVDLKAGDMVRVTSGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180

Query: 166 VELAYNQVEK 175
           VEL ++QV K
Sbjct: 181 VELDFSQVAK 190


>gi|116491404|ref|YP_810948.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1]
 gi|118586217|ref|ZP_01543682.1| transcriptional antitermination factor [Oenococcus oeni ATCC
           BAA-1163]
 gi|290890972|ref|ZP_06554036.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429]
 gi|116092129|gb|ABJ57283.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1]
 gi|118433346|gb|EAV40047.1| transcriptional antitermination factor [Oenococcus oeni ATCC
           BAA-1163]
 gi|290479371|gb|EFD88031.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429]
          Length = 185

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY+V  YS  E +  +++  R    G+   + ++ +P    +               F
Sbjct: 8   KDWYVVHTYSGYENRVKQNLEQRRESMGMTDFIFQVIVPENEKIKTGPNGELKKVVENDF 67

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ VMTD+ ++ +++TP V GFLG+   G  P+PVT  EI+ IM+++   ++R V
Sbjct: 68  PGYVLVEMVMTDQSWYVVRNTPGVTGFLGSHGQGSKPNPVTKDEIDRIMHRM-GLIERKV 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +  +VGE V +  G      G +  +D EK  V V V +FGR T  E+ +N ++KI
Sbjct: 127 DDLNVKVGETVSIIGGAMNGMEGKITAIDREKQEVQVLVDMFGRETETEVPFNDIDKI 184


>gi|308178151|ref|YP_003917557.1| transcription antitermination protein NusG [Arthrobacter
           arilaitensis Re117]
 gi|307745614|emb|CBT76586.1| transcription antitermination protein NusG [Arthrobacter
           arilaitensis Re117]
          Length = 275

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++  Y+  E +   ++  R+    +D  + +I +P E VV V+  ++    R   PGY
Sbjct: 91  WFVIHTYAGYENRVKVNLETRIQTQDMDEFIFDIQVPMEEVVEVKNTQRKIVRRVRIPGY 150

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSS--- 120
           VL++  +TD  +  ++ TP V GF+G   +P+P++  E+  ++   +   V++P +S   
Sbjct: 151 VLVRMELTDASWGVVRHTPGVTGFVGNAHDPNPLSLDEVFSMLEHTIVDPVEQPSASKPG 210

Query: 121 --------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                   V FEVGE V V+DGPF +    +  +  + +++ V V IF R TPV L +NQ
Sbjct: 211 RAPITEVTVDFEVGESVIVNDGPFETMPATISEIKLDAAQLVVLVSIFERETPVTLNFNQ 270

Query: 173 VEKI 176
           V KI
Sbjct: 271 VTKI 274


>gi|57237527|ref|YP_178541.1| transcription antitermination protein NusG [Campylobacter jejuni
           RM1221]
 gi|86148936|ref|ZP_01067168.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86151847|ref|ZP_01070061.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153839|ref|ZP_01072042.1| transcription termination/antitermination factor NusG
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597087|ref|ZP_01100323.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613601|ref|YP_001000180.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|148925852|ref|ZP_01809539.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157414766|ref|YP_001482022.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167005138|ref|ZP_02270896.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205355346|ref|ZP_03222117.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218562128|ref|YP_002343907.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|283955895|ref|ZP_06373385.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|315124017|ref|YP_004066021.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|14423820|sp|Q9PI36|NUSG_CAMJE RecName: Full=Transcription antitermination protein nusG
 gi|57166331|gb|AAW35110.1| transcription antitermination protein NusG [Campylobacter jejuni
           RM1221]
 gi|85840294|gb|EAQ57551.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85841476|gb|EAQ58724.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842800|gb|EAQ60012.1| transcription termination/antitermination factor NusG
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190776|gb|EAQ94749.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359834|emb|CAL34621.1| transcription antitermination protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|121504265|gb|EAQ73248.2| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|145844838|gb|EDK21942.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157385730|gb|ABV52045.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205346580|gb|EDZ33212.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|283792555|gb|EFC31334.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|284925740|gb|ADC28092.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|307747405|gb|ADN90675.1| Transcription antitermination protein nusG [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315017739|gb|ADT65832.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315057893|gb|ADT72222.1| Transcription antitermination protein NusG [Campylobacter jejuni
           subsp. jejuni S3]
 gi|315928198|gb|EFV07515.1| transcription termination/antitermination factor NusG
           [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315929765|gb|EFV08935.1| transcription termination/antitermination factor NusG
           [Campylobacter jejuni subsp. jejuni 305]
 gi|315931086|gb|EFV10060.1| transcription termination/antitermination factor NusG
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 177

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q Y+  E     +I   +  +G++  + EI +P+E V+  + G++  SER  +
Sbjct: 3   THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV     +  +++H I+  PKV  F+G  + P+P+T+ +I  I+ +V      P   +
Sbjct: 63  SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE V +++GPFA+F  IV+  D  +  + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177


>gi|240143819|ref|ZP_04742420.1| transcription termination/antitermination factor NusG [Roseburia
           intestinalis L1-82]
 gi|257204193|gb|EEV02478.1| transcription termination/antitermination factor NusG [Roseburia
           intestinalis L1-82]
 gi|291534886|emb|CBL07998.1| transcription antitermination protein nusG [Roseburia intestinalis
           M50/1]
 gi|291539447|emb|CBL12558.1| transcription antitermination protein nusG [Roseburia intestinalis
           XB6B4]
          Length = 172

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 6/173 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G K +  ++ F
Sbjct: 3   EAHWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGAKKSVSKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+TD E++         +++    V
Sbjct: 63  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMK------PLGIKKENIEV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            F  G+ V V+ G +    G+++ ++  K  V + V +FGR TPVE+++  V+
Sbjct: 117 DFTEGDTVVVTGGVWKDTIGVIQAMNHGKQSVTINVELFGRETPVEISFADVK 169


>gi|311112018|ref|YP_003983240.1| transcription termination/antitermination factor NusG [Rothia
           dentocariosa ATCC 17931]
 gi|310943512|gb|ADP39806.1| transcription termination/antitermination factor NusG [Rothia
           dentocariosa ATCC 17931]
          Length = 242

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    I  R+     +  + E+ +P E VV  +   K    R   PGY
Sbjct: 62  WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 121

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
           VL++  +TD  +  ++ TP V GF+G    NP P+   E+  ++  V    Q        
Sbjct: 122 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEEQQSKGLPTP 181

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +PV    + VGE V V  GPF   +  +  +  E  +V   + +F R TPV L +NQ+EK
Sbjct: 182 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 241

Query: 176 I 176
           I
Sbjct: 242 I 242


>gi|313124310|ref|YP_004034569.1| transcription antitermination protein nusg [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280873|gb|ADQ61592.1| Transcription antitermination protein nusG [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685659|gb|EGD27741.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 194

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P E  +   +G+K     + FP
Sbjct: 17  KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 76

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120
           GYVL++ VMTD+ +  +++TP V GF+G+    S  +    E    + Q++         
Sbjct: 77  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 136

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +EVGE V ++ G F    G +  + ++K ++ + + +FG     EL ++QV+K+
Sbjct: 137 YDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHAITAELGFDQVKKM 192


>gi|302384847|ref|YP_003820669.1| NusG antitermination factor [Clostridium saccharolyticum WM1]
 gi|302195475|gb|ADL03046.1| NusG antitermination factor [Clostridium saccharolyticum WM1]
          Length = 171

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+++P E V+ ++ G +  ++++ F
Sbjct: 3   EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T+ E+E +        +     V
Sbjct: 63  PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMEKL------GFKNEEIIV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G+ V V+ G +    G +K+++E K  + + V +FGR TPVEL +++V+K+
Sbjct: 117 GFEEGDTVVVTSGAWKDTVGAIKSINEGKKTITMSVEMFGRETPVELNFSEVKKM 171


>gi|160916271|ref|ZP_02078478.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991]
 gi|158431995|gb|EDP10284.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991]
          Length = 183

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 102/177 (57%), Gaps = 5/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V  Y+  E +  E++  R+   GL   +  I +  E+ +  + G++V   +  F 
Sbjct: 7   KQWYVVNTYAGHENRVRENLERRIETMGLQDKLFRIIVAEEKEIEYKNGKEVEKTKNLFS 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+ ++ +MTD+ ++ +++TP V GF+   G G  P PV + E+E+I+ ++  + ++   
Sbjct: 67  GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMENILRRLGMSERKVQ- 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FEVG+RV +  G FA+  G V+ + +++    V  ++FGR TP E+ Y  +EK+
Sbjct: 126 -VDFEVGDRVRILSGAFANVEGTVEELHDDEQTAVVLTILFGRETPTEIPYGDLEKV 181


>gi|283954236|ref|ZP_06371760.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794254|gb|EFC32999.1| putative transcription antitermination protein [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 177

 Score =  144 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q Y+  E     +I      +G++  + EI +P+E V+  + G++  SER  +
Sbjct: 3   THKWYAIQTYAGSEMAVKRAIENLAKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV     +  +++H I+  PKV  F+G  + P+P+T+ +I  I+ +V      P   +
Sbjct: 63  SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE V + +GPFA+F  IV+  D  +  + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRIIEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177


>gi|225376339|ref|ZP_03753560.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM
           16841]
 gi|225211715|gb|EEG94069.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM
           16841]
          Length = 178

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 6/173 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L+  + E+ +P + VV ++ G      ++ F
Sbjct: 9   EAHWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGANKTVSKKMF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+TD E++         ++     V
Sbjct: 69  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMK------PLGIKTENVEV 122

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            F  G+ V V  G +    G++++++  K  V + V +FGR TPVE+++  ++
Sbjct: 123 DFAEGDTVTVIGGVWKDTVGVIQSMNHSKQIVTINVELFGRETPVEISFADIK 175


>gi|153951948|ref|YP_001398490.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152939394|gb|ABS44135.1| transcription antitermination protein NusG [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 177

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +Q Y+  E     +I   +  +G++  + EI +P+E V+  + G++  SER  +
Sbjct: 3   THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV     +  +++H I+  PKV  F+G  + P+P+T+ +I  I+ +V      P   +
Sbjct: 63  SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVYNRA-APKPKI 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE V +++GPFA+F  IV+  D  +  + + V IFGR TPVE+ Y+QVEKI+
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177


>gi|169824235|ref|YP_001691846.1| transcription antiterminator [Finegoldia magna ATCC 29328]
 gi|302380892|ref|ZP_07269354.1| transcription termination/antitermination factor NusG [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234923|ref|ZP_07321548.1| transcription termination/antitermination factor NusG [Finegoldia
           magna BVS033A4]
 gi|167831040|dbj|BAG07956.1| transcription antiterminator [Finegoldia magna ATCC 29328]
 gi|302311270|gb|EFK93289.1| transcription termination/antitermination factor NusG [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494041|gb|EFL53822.1| transcription termination/antitermination factor NusG [Finegoldia
           magna BVS033A4]
          Length = 193

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 3/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I   +   G    + E+ +P+E  VS   G K   ER+ FPG
Sbjct: 24  KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +K  +TD  ++ +++T  V GF+G    P  V++ EI+    + ++  ++    +  
Sbjct: 84  YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKE---IDV 140

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+ V +  G F+   GI++ ++ EK+   V + +FGR T VE++++ +EKI
Sbjct: 141 NVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193


>gi|313496807|gb|ADR58173.1| NusG [Pseudomonas putida BIRD-1]
          Length = 159

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P     FE GE V V DGPFA
Sbjct: 61  VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVIDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 159


>gi|37520399|ref|NP_923776.1| transcription antitermination protein NusG [Gloeobacter violaceus
           PCC 7421]
 gi|35211392|dbj|BAC88771.1| transcription antitermination protein [Gloeobacter violaceus PCC
           7421]
          Length = 205

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRF 60
            P WY VQV S CEKK   ++  R+    +   + ++ IP  + V +R+      S  + 
Sbjct: 19  EPHWYFVQVASGCEKKVKTNLEQRIQTMEMSERILKVEIPERQAVRIRQEGSRTASAEKI 78

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111
           FPGYVLI  VM D+ +  +K+TP VI F+GT E                           
Sbjct: 79  FPGYVLINMVMDDESWQVVKNTPNVINFVGTEERRRYGRGRGHVTPRPLGSAEVNRIFRA 138

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           A  + PV  V  E G ++ V+ GPF  FNG V  V+ E+  +   + IFGR TPVEL +N
Sbjct: 139 AEQEEPVIKVDLEPGHKIEVTAGPFQDFNGEVVEVNPERGTLKALISIFGRDTPVELGFN 198

Query: 172 QVEKI 176
           QV ++
Sbjct: 199 QVRRL 203


>gi|34540216|ref|NP_904695.1| transcription antitermination protein NusG [Porphyromonas
           gingivalis W83]
 gi|188995440|ref|YP_001929692.1| putative transcription antitermination protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|34396528|gb|AAQ65594.1| transcription antitermination protein NusG [Porphyromonas
           gingivalis W83]
 gi|188595120|dbj|BAG34095.1| putative transcription antitermination protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 179

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 2/175 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             ++Y+++  S  E K  E +   +  S L + + ++ IP+E+V++ R G++V  ER + 
Sbjct: 5   EKKFYVLRAISGKENKVREYLEAEMKHSDLGNYLFQVLIPTEKVMTQRAGKRVVKERPYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSS 120
           PGYVL++AV+  +V H ++ TP VIGFLG    P+P+  SE+  I+ +V+    +     
Sbjct: 65  PGYVLVEAVLVGEVEHRLRSTPNVIGFLG-DGRPAPLHPSEVSRILGKVDQLDSEDEEYE 123

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F VGE V VSDG FA F+ IV+ V+ +K ++ V V IFGR T +EL+Y QVEK
Sbjct: 124 LSFMVGETVKVSDGAFAGFDAIVEEVNPDKKKLKVMVKIFGRKTALELSYVQVEK 178


>gi|224542348|ref|ZP_03682887.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524730|gb|EEF93835.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM
           15897]
          Length = 199

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 5/176 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K  E++  R+   GL +++  I IP      ++ G+KVN     FPG
Sbjct: 24  QWYVVNTYSGHENKVKENLEKRVESMGLQNILFNIVIPEHVETEIKNGKKVNKTVNMFPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           YVL++ +MTD+ ++ +++TP V GF+   G G  P PV   E++ I+  +   +Q     
Sbjct: 84  YVLVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVNKRELDPILKSMG--IQTTAVE 141

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V F  G+ V V  GPFAS +G V+++D+EK    V V   G +TP+++   Q++KI
Sbjct: 142 VDFVEGDYVEVLAGPFASKSGKVESIDKEKETATVLVDFLGNLTPIDMELIQLKKI 197


>gi|238922785|ref|YP_002936298.1| transcription antitermination protein NusG [Eubacterium rectale
           ATCC 33656]
 gi|238874457|gb|ACR74164.1| transcription antitermination protein NusG [Eubacterium rectale
           ATCC 33656]
 gi|291523705|emb|CBK89292.1| transcription antitermination protein nusG [Eubacterium rectale DSM
           17629]
 gi|291528833|emb|CBK94419.1| transcription antitermination protein nusG [Eubacterium rectale
           M104/1]
          Length = 172

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K   +I   +    L+  + E+ +P E V  V+ G +    ++ F
Sbjct: 3   EANWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVTEVKNGVRKQVSKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+T++E+  +  + E  V      V
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPLGIKTENVV------V 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F  G+ + V  G +    G++  ++  K  V + V +FGR TPVE+++  V+K
Sbjct: 117 DFAEGDMIVVIGGVWKDTVGVITAMNYHKQTVTINVELFGRETPVEVSFADVKK 170


>gi|330721677|gb|EGG99685.1| Transcription antitermination protein NusG [gamma proteobacterium
           IMCC2047]
          Length = 159

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + ++  R+    ++    E+ +P+E VV +R G+K  SER+F+PGYVL+   M D  +H 
Sbjct: 1   MRALLERIKLHDMEDKFGEVLVPTEEVVEMRGGQKRKSERKFYPGYVLVNMEMDDASWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +  TP+V+GF+G   + P+P+T+ E + I+ +VE  V++P     FE GE V V DGPFA
Sbjct: 61  VNSTPRVMGFIGGTADKPAPITEREADAILQRVEQGVEQPRPKTLFEPGEMVRVIDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F+G+V+ V+  K+R+ V V IFGR TPVEL ++QVEK
Sbjct: 121 DFSGVVEEVNYPKNRLQVAVTIFGRSTPVELGFDQVEK 158


>gi|281425130|ref|ZP_06256043.1| transcription termination/antitermination factor NusG [Prevotella
           oris F0302]
 gi|299141115|ref|ZP_07034252.1| transcription termination/antitermination factor NusG [Prevotella
           oris C735]
 gi|281400722|gb|EFB31553.1| transcription termination/antitermination factor NusG [Prevotella
           oris F0302]
 gi|298577075|gb|EFI48944.1| transcription termination/antitermination factor NusG [Prevotella
           oris C735]
          Length = 181

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+++  S  E K  E I   L  + L    V+++ IP E+  S+R G++V  E+   P
Sbjct: 7   KWYVLRAVSGKEAKLKEYIEAELKHNELLSTHVSQVLIPVEKHASLRNGKRVVKEKISLP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ ++A +   V HT++  P  +GFLG  + PSPV  SEI  ++   E         + 
Sbjct: 67  GYIFVEANLVGDVAHTLRFMPNCLGFLGGLDEPSPVPQSEINRMLGTAEVTEIEDTVDIP 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELSFMQVEK 179


>gi|297587475|ref|ZP_06946119.1| transcription termination/antitermination factor NusG [Finegoldia
           magna ATCC 53516]
 gi|297574164|gb|EFH92884.1| transcription termination/antitermination factor NusG [Finegoldia
           magna ATCC 53516]
          Length = 193

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 3/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I   +   G    + E+ +P+E  VS   G K   ER+ FPG
Sbjct: 24  KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +K  +TD  ++ +++T  V GF+G    P  V++ EI+    + ++  ++    +  
Sbjct: 84  YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKE---IDV 140

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +G+ V +  G F+   GI++ ++ EK+   V + +FGR T VE++++ +EKI
Sbjct: 141 NIGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193


>gi|313206995|ref|YP_004046172.1| transcription antitermination protein nusg [Riemerella
           anatipestifer DSM 15868]
 gi|312446311|gb|ADQ82666.1| transcription antitermination protein nusG [Riemerella
           anatipestifer DSM 15868]
 gi|315024071|gb|EFT37073.1| Transcription antitermination protein NusG [Riemerella
           anatipestifer RA-YM]
 gi|325335571|gb|ADZ11845.1| Transcription antiterminator [Riemerella anatipestifer RA-GD]
          Length = 180

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 107/178 (60%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K    I   + R  L+  V++I IP E+ + +R G+KV  E+ ++
Sbjct: 3   ELKWYVLKAVSGQENKVKSYIENEIQRFKLEDFVSQIVIPMEKTIQMRNGKKVQKEKPYY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ-RPV 118
           PGY++++A +  +V H IK+ P VI FL    G +P P+  SE+  ++ +++   Q    
Sbjct: 63  PGYLMVEANLKGEVPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSQFATD 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + + VGE V V DGPF  FNG ++ + E+K ++ V V+IFGR TP+EL Y QVEKI
Sbjct: 123 VDIPYVVGESVKVIDGPFNGFNGTIEKIHEDKKKLEVMVLIFGRKTPLELNYMQVEKI 180


>gi|167768207|ref|ZP_02440260.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1]
 gi|317499074|ref|ZP_07957354.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709731|gb|EDS20310.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1]
 gi|291560226|emb|CBL39026.1| transcription antitermination protein nusG [butyrate-producing
           bacterium SSC/2]
 gi|316893650|gb|EFV15852.1| transcription termination/antitermination factor NusG
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 181

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 4/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+ +P E VV +R G K    R+ F
Sbjct: 3   EANWYVVHTYSGYENKVKVDIEKTIENRKLQDEILEVRVPLEDVVEMRNGVKKQVSRKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRP 117
           PGYVLI  +M D  ++ +++T  V GF+G G  P P+T +E++ +  Q+    +    R 
Sbjct: 63  PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGIQIGGEQQETPARE 122

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              +  EVG+ + V+ G +      V  ++E K  V +EV +FGR T VE+ +  ++K
Sbjct: 123 KIELDIEVGDMIVVTSGAWEGTTSAVTAINESKQTVTIEVEMFGRATSVEIDFLDIKK 180


>gi|282857085|ref|ZP_06266331.1| transcription termination/antitermination factor NusG
           [Pyramidobacter piscolens W5455]
 gi|282585020|gb|EFB90342.1| transcription termination/antitermination factor NusG
           [Pyramidobacter piscolens W5455]
          Length = 181

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+ VQ YS  E K   ++  R++  G+++ +  + +P+E  V V+ G+      + FP
Sbjct: 6   HEWFTVQTYSGYENKVKANLDQRIASMGMENKIFRVLVPTEERVVVKDGKSRRISHKLFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120
            YVL++ +M ++ ++ ++ TP V GF+G G +P P+TDSEI+ I+ ++      P     
Sbjct: 66  SYVLVEMIMDEQSWYVVRHTPGVTGFIGAGNHPLPITDSEIDEILVKIGEKEAAPAPKVE 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  E+G+RV V+ GP     G V  +   K +V     +FG  T +E+ Y ++EK+
Sbjct: 126 IDCEIGDRVRVATGPLTGMEGPVTEISPGKGKVKFSANVFGHDTEIEMDYAELEKL 181


>gi|313677108|ref|YP_004055104.1| transcription antitermination protein nusg [Marivirga tractuosa DSM
           4126]
 gi|312943806|gb|ADR22996.1| transcription antitermination protein nusG [Marivirga tractuosa DSM
           4126]
          Length = 183

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 5/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++V S  EKK    +   ++R  ++  + +I IP+E+V  +R G+K   E+ FFPG
Sbjct: 5   KWYVLRVISGQEKKIKSYLENEIARQKIEDFIPQILIPTEKVYEMRNGKKRVREKNFFPG 64

Query: 64  YVLIKAVMTD-KVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQ-RPV 118
           YV + A ++  + +H I   P VIGFLG       P P+  +E+  I+ +V+   +    
Sbjct: 65  YVFVSADISHGEAHHVITSIPGVIGFLGGQGDEKEPVPLRQNEVNRILGKVDETEEMDEK 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            S  + VGE V V DGPF+ F G V+ V EE+ +++V V IFGR TPVEL Y QVEK
Sbjct: 125 LSTPYIVGESVKVMDGPFSGFTGSVEEVFEERKKLNVMVKIFGRNTPVELNYMQVEK 181


>gi|116071969|ref|ZP_01469237.1| transcription antitermination protein NusG [Synechococcus sp.
           BL107]
 gi|116065592|gb|EAU71350.1| transcription antitermination protein NusG [Synechococcus sp.
           BL107]
          Length = 222

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    + ++K   + ++E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QISK 220


>gi|330505219|ref|YP_004382088.1| transcription antitermination protein NusG [Pseudomonas mendocina
           NK-01]
 gi|328919505|gb|AEB60336.1| transcription antitermination protein NusG [Pseudomonas mendocina
           NK-01]
          Length = 159

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           IKDTP+V+GF+G   + P+P+T+ E E I+ +V  +  +P     FE GE V V DGPFA
Sbjct: 61  IKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKPKTLFEPGEMVRVVDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 DFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 158


>gi|239623239|ref|ZP_04666270.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522205|gb|EEQ62071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  YS  E K    I   +    L   + E+++P   VV ++ G +  ++++ F
Sbjct: 3   EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLI  VM D  ++ +++T  V GF+G G  P P+T+ E+  +  +     +     V
Sbjct: 63  PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASLGFR-----REEDVLV 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FEVG+ V V  G +    G +K +++ K  + + V +FGR TPVEL + +V+++
Sbjct: 118 DFEVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKRM 172


>gi|148243458|ref|YP_001228615.1| transcription antitermination protein NusG [Synechococcus sp.
           RCC307]
 gi|147851768|emb|CAK29262.1| Transcription antiterminator protein NusG [Synechococcus sp.
           RCC307]
          Length = 221

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 38  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKIKKDGSRQSTEEKVFP 97

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVLI+ VM +     ++ TP VI F+G  E            P P++ SE+  I  + +
Sbjct: 98  GYVLIRMVMDEDTEQAVRSTPNVINFVGHEERRTTGRVRGRIKPRPLSRSEVNRIFKRAQ 157

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++PV  V    G+R+ V+ GPF  F+G V  +  ++S++   + IFGR TPVEL ++
Sbjct: 158 E--KKPVVKVDLAEGDRISVTAGPFKDFSGEVIEISGDRSKLKALLSIFGRETPVELEFS 215

Query: 172 QVEK 175
           Q+ K
Sbjct: 216 QISK 219


>gi|213963080|ref|ZP_03391338.1| transcription termination/antitermination factor NusG
           [Capnocytophaga sputigena Capno]
 gi|213954164|gb|EEB65488.1| transcription termination/antitermination factor NusG
           [Capnocytophaga sputigena Capno]
          Length = 183

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  +  E K    I    SR G    V E+ +P+E+VV VR G+K+  +R   
Sbjct: 6   EKKWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKITKDRVHM 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           PGYV++K  +  +V H IK  P V+GFL    G +P P+  +++  ++ QV+   +    
Sbjct: 66  PGYVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVNRMLGQVDELAETVET 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ FEVGE V + DGPF  FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 VAIPFEVGEMVKLIDGPFNGFNGTIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183


>gi|78185724|ref|YP_378158.1| transcription antitermination protein NusG [Synechococcus sp.
           CC9902]
 gi|78170018|gb|ABB27115.1| transcription antitermination protein nusG [Synechococcus sp.
           CC9902]
          Length = 222

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    + ++K   + ++E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QISK 220


>gi|323344615|ref|ZP_08084839.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
 gi|323093885|gb|EFZ36462.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
          Length = 181

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++  S  E K  E I   +  + L    V ++ IP E+  S+R G++V  E+   
Sbjct: 6   KNWYVLRAVSGKEAKLKEYIEAEMKHNELLASHVYQVLIPVEKHASLRNGKRVEKEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV ++A++   V HT++  P  +GFLG  ++PSPV  S+I  ++   E         V
Sbjct: 66  PGYVFVEAILKGDVAHTLRFMPNCLGFLGGLDDPSPVPQSDINRMLGAAEETELINDVDV 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + V E V V DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 126 PYTVDETVKVIDGPFSGFSGVIEEVNTEKHKLKVMVKIFGRKTPLELSFMQVEK 179


>gi|327479312|gb|AEA82622.1| transcription antitermination protein NusG [Pseudomonas stutzeri
           DSM 4166]
          Length = 159

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P     FE GE V V+DGPFA
Sbjct: 61  VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVADGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+
Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159


>gi|160944618|ref|ZP_02091845.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443802|gb|EDP20806.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104378|emb|CBL01922.1| transcription antitermination protein nusG [Faecalibacterium
           prausnitzii SL3/3]
          Length = 183

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 6/171 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63
           WY+V  YS  E K    +   +    L  L+ +I +P E V  + + G++   E + FPG
Sbjct: 16  WYVVHTYSGYENKVANDLQTMVENRHLQELICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL+K VM D  ++ +++T    GF+G    P P+T  E+E +        +    SV F
Sbjct: 76  YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM-----GVEKAAPLSVDF 130

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            VG+ V ++ GP   F G+V+ +D E  +V ++V +FGR TP E+   QVE
Sbjct: 131 AVGDTVQITAGPLEGFMGLVEAIDTENFKVKLKVNMFGRETPAEVEIGQVE 181


>gi|313159496|gb|EFR58859.1| transcription termination/antitermination factor NusG [Alistipes
           sp. HGB5]
          Length = 186

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 109/180 (60%), Gaps = 7/180 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V+     E K  E I   +  + L+  ++++ IP+E+V ++R G+KV+ E+  +P
Sbjct: 6   KQWYVVRAIGGKENKVKEYIEAEIRHNNLEEYISQVLIPTEKVYTIRNGKKVSKEKVSYP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEAAVQR 116
           GYVL++A    ++   I++TP V+GFLG  +      N +P+   E+  I+ +V+     
Sbjct: 66  GYVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDEMNAM 125

Query: 117 PVSS-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              + + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL + QVEK
Sbjct: 126 EEENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELGFTQVEK 185


>gi|224436430|ref|ZP_03657447.1| transcription antitermination protein NusG [Helicobacter cinaedi
           CCUG 18818]
 gi|313142944|ref|ZP_07805137.1| transcription termination factor NusG [Helicobacter cinaedi CCUG
           18818]
 gi|313127975|gb|EFR45592.1| transcription termination factor NusG [Helicobacter cinaedi CCUG
           18818]
          Length = 171

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 4/175 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY +Q YS  EK   E+I   + ++ +     E+ +P+E ++  +K      +R  +P
Sbjct: 1   MEWYAIQTYSGSEKSVGEAIRNLIVQNQMQDRFGEVVVPTESIIETKKK---IVDRSLYP 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+  +  K++H I+  P+V  F+G  + P+P+++++I  I+ +V      P   + 
Sbjct: 58  GYVFIQVDLDTKLWHMIQSLPRVGRFIGESKKPTPLSEADIAKILEKVRNPS-APKPKIS 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FE GE V + DGPF +F G V+  D E  ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 117 FEQGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRNTPVEILYSQVEKIV 171


>gi|134283248|ref|ZP_01769949.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 305]
 gi|134245443|gb|EBA45536.1| transcription termination/antitermination factor NusG [Burkholderia
           pseudomallei 305]
          Length = 160

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
             ++  R+ R+G+     +I +P+E VV V+ G K  +ERRFFPGYVL++  MTD+ +H 
Sbjct: 2   QRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTDETWHL 61

Query: 79  IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +K+T KV GF+G     PSP++  E+E IM+Q++  V++P     FEVGE V V +GPF 
Sbjct: 62  VKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVKEGPFT 121

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+
Sbjct: 122 DFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 160


>gi|320531938|ref|ZP_08032843.1| transcription termination/antitermination factor NusG [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320135852|gb|EFW27895.1| transcription termination/antitermination factor NusG [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 281

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 32/208 (15%)

Query: 1   MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56
           M+    +WY++  YS  E++    I  R     ++  + + T+P E V+ ++   +K   
Sbjct: 74  MSALPGQWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 133

Query: 57  ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
            R   PGYV ++  + D       + TIKDTP V GF+G   NP P+T  E    +    
Sbjct: 134 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 193

Query: 112 AAVQR-----------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
             +                          V  V FEVGE V V+DGPF S    +  +  
Sbjct: 194 EEIAAKEAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHP 253

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E  ++ V + +FGR TP EL++ QV KI
Sbjct: 254 ETQKLQVLISLFGRDTPAELSFTQVAKI 281


>gi|229827806|ref|ZP_04453875.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC
           49176]
 gi|229788005|gb|EEP24119.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC
           49176]
          Length = 176

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 9/177 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS----ERR 59
            WY+V  YS  E    + I   +    L   + E+ +P+E V  +R G++        R+
Sbjct: 5   NWYVVHTYSGYENAVKDDIEATIRSRNLQEQIKEVLVPTEEVTIIRSGKESKKGKPTPRK 64

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            +PGYV I   M D+ ++ I++T  V GF+G G  P P++  E++ ++N V ++V+    
Sbjct: 65  LYPGYVFINMEMNDETWYVIRNTRGVTGFVGPGSKPVPLSAEEMDKMLNSVRSSVEA--- 121

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               EVG+ V +  G F    G V  V+ ++  V + +   GR TPVE+++  ++KI
Sbjct: 122 --DIEVGDWVRIVTGSFQDREGEVIEVNLDERLVTININSMGRDTPVEISFTDIKKI 176


>gi|317504004|ref|ZP_07962011.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
 gi|315664864|gb|EFV04524.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
          Length = 181

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+++  S  E K  E I   +  + L    V+++ IP E+  S+R G++V  E+   P
Sbjct: 7   KWYVLRAVSGKEAKLKEYIDAEMKHNELLSTHVSQVLIPMEKHASLRNGKRVVKEKISLP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ ++A +   V HT++  P  +GFLG  +NPSPV  SEI  ++   E         V 
Sbjct: 67  GYIFVEANLVGDVVHTLRFMPNCLGFLGGLDNPSPVLQSEINRMLGTAENTEIEGTVDVP 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + V E V V DGPF+ F+G+++ ++ EK ++ V V IFGR TP+EL++ QVEK
Sbjct: 127 YVVDETVKVIDGPFSGFSGVIEEINAEKHKLKVMVKIFGRKTPLELSFMQVEK 179


>gi|88809791|ref|ZP_01125297.1| transcription antitermination protein NusG [Synechococcus sp. WH
           7805]
 gi|88786175|gb|EAR17336.1| transcription antitermination protein NusG [Synechococcus sp. WH
           7805]
          Length = 222

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V V+K   + ++E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           QV K
Sbjct: 217 QVSK 220


>gi|289803599|ref|ZP_06534228.1| transcription antitermination protein NusG [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 153

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 25  RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
            +    ++ L  E+ +P+E VV +R G++  SER+FFPGYVL++ VM D  +H ++  P+
Sbjct: 1   HIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPR 60

Query: 85  VIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
           V+GF+G   + P+P++D E++ IMN+++    +P     FE GE V V+DGPFA FNG+V
Sbjct: 61  VMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVV 120

Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 EEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 152


>gi|294674795|ref|YP_003575411.1| transcription termination/antitermination factor NusG [Prevotella
           ruminicola 23]
 gi|294473430|gb|ADE82819.1| transcription termination/antitermination factor NusG [Prevotella
           ruminicola 23]
          Length = 181

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/175 (39%), Positives = 107/175 (61%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
            +WY+++  S  E K  E +   + R   L   V ++ +P+E+   +R G++V  E+ F 
Sbjct: 6   MKWYVLRAVSGKEAKVKEYLEALMKRDSFLQANVGQVLLPTEKYAQLRNGKRVVKEKLFL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120
           PGYVL++A +  ++ HT++  P V+GFLG  +NP+PV  S+I  I+   E    +     
Sbjct: 66  PGYVLVEANLQGEMAHTLRFMPNVLGFLGGLDNPTPVKQSDINRILGTAEETEIKSEEIG 125

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V + V E V V+DGPF+ F+GI++ V+ EK ++ V V IFGR TP+EL YNQVEK
Sbjct: 126 VPYAVDEAVKVTDGPFSGFSGIIEEVNAEKHKLKVMVKIFGRKTPLELGYNQVEK 180


>gi|116074059|ref|ZP_01471321.1| transcription antitermination protein NusG [Synechococcus sp.
           RS9916]
 gi|116069364|gb|EAU75116.1| transcription antitermination protein NusG [Synechococcus sp.
           RS9916]
          Length = 220

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R     +   + EI IP    V ++K   + ++E + FP
Sbjct: 37  RWYAVQVASSCEKKVKATLEQRAVTLAVSDRILEIEIPETPAVKIKKDGSRQSTEEKVFP 96

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 97  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 156

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 157 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 214

Query: 172 QVEK 175
           QV K
Sbjct: 215 QVSK 218


>gi|256819266|ref|YP_003140545.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271]
 gi|315224709|ref|ZP_07866532.1| transcription termination/antitermination factor NusG
           [Capnocytophaga ochracea F0287]
 gi|256580849|gb|ACU91984.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271]
 gi|314945337|gb|EFS97363.1| transcription termination/antitermination factor NusG
           [Capnocytophaga ochracea F0287]
          Length = 183

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  +  E K    I    SR G    V E+ +P+E+VV VR G+K   +R   
Sbjct: 6   EKKWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKTTKDRVHM 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           PGYV++K  +  +V H IK  P V+GFL    G +P P+  +++  ++ QV+   +    
Sbjct: 66  PGYVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVSRMLGQVDELAETVET 125

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ FEVGE V + DGPF  FN  ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+
Sbjct: 126 VAIPFEVGEMVKLIDGPFNGFNATIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183


>gi|253579423|ref|ZP_04856693.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849521|gb|EES77481.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 171

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 6/173 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K    I   +    L+  + E+ +P + V  ++ G     +++ F
Sbjct: 3   EAKWYVVHTYSGYENKVKVDIEKTIENRHLEDQILEVRVPLQEVAELKNGALKQVQKKMF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+  VM D  ++ +++T  V GF+G G  P P+T+ E+      +   +++    V
Sbjct: 63  PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKKEEIQV 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            F  G+ V V+ G +    G++  ++ +K    + V +FGR TPVE+++ +++
Sbjct: 117 DFAEGDTVVVTGGAWKDTVGVITALNVQKQTATINVELFGRETPVEISFAEIK 169


>gi|327404141|ref|YP_004344979.1| transcription antitermination protein nusG [Fluviicola taffensis
           DSM 16823]
 gi|327319649|gb|AEA44141.1| transcription antitermination protein nusG [Fluviicola taffensis
           DSM 16823]
          Length = 183

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 3/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+V+  S  EKK  E +   +SR  LD  V+++ IP+E+V  +R G+K++ E+ + P
Sbjct: 6   KRWYVVRAVSGKEKKVKEYLDLEISRLKLDDYVSQVLIPTEKVFQIRNGKKISKEKAYLP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
           GYVLI+A +  +V H IK  P VIGFLG   G +P P+  SE+  I+ +V+   +     
Sbjct: 66  GYVLIEAALLGEVPHVIKGIPNVIGFLGAEKGGDPQPMRLSEVNRILGKVDELSETEEEL 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + F +GE V V DGPF +F+G+V  ++E+K ++ V V IFGR   +EL+Y QVEK
Sbjct: 126 KIPFVIGESVKVIDGPFNNFSGVVDEINEDKKKLKVMVKIFGRKNLLELSYMQVEK 181


>gi|16330012|ref|NP_440740.1| transcription antitermination protein NusG [Synechocystis sp. PCC
           6803]
 gi|548397|sp|P36265|NUSG_SYNY3 RecName: Full=Transcription antitermination protein nusG
 gi|311688|emb|CAA51202.1| nusG [Synechocystis sp. PCC 6803]
 gi|1652499|dbj|BAA17420.1| transcription antitermination protein; NusG [Synechocystis sp. PCC
           6803]
          Length = 205

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62
            W+ VQV S CEK+   ++  R+    +   + ++ IP   +V +RK       E + FP
Sbjct: 22  HWFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFP 81

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP---------VTDSEIEHIMNQVEAA 113
           GYVLI+ +M D  +  +K+TP VI F+G+ +             +  S  E         
Sbjct: 82  GYVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVD 141

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            Q PV  +  E+G+ + V  GPF  F G V  V  E+S++   + IFGR TPVEL + QV
Sbjct: 142 EQEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQV 201

Query: 174 EK 175
           EK
Sbjct: 202 EK 203


>gi|320536852|ref|ZP_08036847.1| transcription termination/antitermination factor NusG [Treponema
           phagedenis F0421]
 gi|320146311|gb|EFW37932.1| transcription termination/antitermination factor NusG [Treponema
           phagedenis F0421]
          Length = 185

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 9/185 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WYI+  +S  E K   +I   +S   +   ++ +I IP E +  ++ G+K   +R+
Sbjct: 1   MAKEWYILHTFSGYENKIERTIRTLISNGEIPQDVIFDIKIPEEVLTEIKDGKKKTVKRK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKD----TPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113
           F PGY+L++  + +  +  + +       V GFLGTG    P PV+ +E + I+ +    
Sbjct: 61  FLPGYLLVEMDLPEMDWKAVCNSVRRIHGVTGFLGTGGNAKPQPVSAAEAKSILQKTGEI 120

Query: 114 --VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              +    +  F VG++V + DGPFA+F+G V+ V  +++++ V V IFGR TPVEL   
Sbjct: 121 KGDKTARFARTFTVGQQVKIIDGPFATFSGEVEEVMADRNKLRVMVTIFGRTTPVELEML 180

Query: 172 QVEKI 176
           QVE I
Sbjct: 181 QVEAI 185


>gi|33864351|ref|NP_895911.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9313]
 gi|33641131|emb|CAE22261.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. MIT 9313]
          Length = 223

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY +QV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 40  RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 99

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E++ I  +  
Sbjct: 100 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKRAA 159

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ +  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 160 E--KKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 217

Query: 172 QVEK 175
           Q+ K
Sbjct: 218 QINK 221


>gi|87123508|ref|ZP_01079359.1| NusG antitermination factor [Synechococcus sp. RS9917]
 gi|86169228|gb|EAQ70484.1| NusG antitermination factor [Synechococcus sp. RS9917]
          Length = 220

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V V+K   + ++E + FP
Sbjct: 37  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 96

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 97  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 156

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 157 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 214

Query: 172 QVEK 175
           QV K
Sbjct: 215 QVSK 218


>gi|110639547|ref|YP_679756.1| transcription antitermination protein nusG [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110282228|gb|ABG60414.1| transcription antitermination protein nusG [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 185

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/182 (42%), Positives = 104/182 (57%), Gaps = 7/182 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V+  S  EKK    +   ++R  L   V ++ IP+E+V  +R G+K   ER FF
Sbjct: 3   ELHWYVVRAVSGQEKKVKSYLENEITRQRLVDYVPQVLIPAEKVYEMRNGKKRVRERSFF 62

Query: 62  PGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEA-AV 114
           PGYVLI+A ++  +  H I   P V+GFLG  E      P P+  SE+  I+  V+   V
Sbjct: 63  PGYVLIQADLSHGEAAHVITSIPGVLGFLGASEGAASKKPIPLRQSEVNRILGTVDDSQV 122

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              V    F VGE V V DGPF+ F G V+ V EEK +++V V IFGR TPVEL Y QVE
Sbjct: 123 GEVVLETPFVVGETVKVMDGPFSGFTGSVEEVFEEKKKLNVMVKIFGRNTPVELNYIQVE 182

Query: 175 KI 176
           K+
Sbjct: 183 KL 184


>gi|261839924|gb|ACX99689.1| transcription antitermination protein NusG [Helicobacter pylori 52]
 gi|315587091|gb|ADU41472.1| transcription termination/antitermination factor NusG [Helicobacter
           pylori 35A]
          Length = 177

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 105/178 (58%), Gaps = 2/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59
           M   WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER 
Sbjct: 1   MMMDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERS 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            +PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P  
Sbjct: 61  LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKP 119

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            +FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 KIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 177


>gi|78213980|ref|YP_382759.1| transcription antitermination protein NusG [Synechococcus sp.
           CC9605]
 gi|78198439|gb|ABB36204.1| NusG antitermination factor [Synechococcus sp. CC9605]
          Length = 222

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QISK 220


>gi|313204187|ref|YP_004042844.1| transcription antitermination protein nusg [Paludibacter
           propionicigenes WB4]
 gi|312443503|gb|ADQ79859.1| transcription antitermination protein nusG [Paludibacter
           propionicigenes WB4]
          Length = 182

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++  S  E K  E I   +  S L   V ++ IP+E+V  +R G+K+  ER   PG
Sbjct: 8   KWYVMRAISGKENKVKEYIDAEIKNSDLGQFVAQVLIPTEKVYQIRNGKKITKERSCMPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           YVLI+A +  ++ H +++TP VIGFLG   N P+P+  SE+  I+  V+   +       
Sbjct: 68  YVLIEAYLIGEISHRLRNTPNVIGFLGEKNNVPTPIRPSEVNRILGSVDELQETAEEMLT 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F VGE V V  GPF+ F+G+++ V+ EK ++ V V+IFGR TP+ELA+ QVEK
Sbjct: 128 PFYVGENVKVIFGPFSGFSGLIEEVNSEKKKLKVMVMIFGRKTPLELAFTQVEK 181


>gi|288926253|ref|ZP_06420178.1| transcription termination/antitermination factor NusG [Prevotella
           buccae D17]
 gi|315606519|ref|ZP_07881534.1| transcription termination/antitermination factor NusG [Prevotella
           buccae ATCC 33574]
 gi|288336944|gb|EFC75305.1| transcription termination/antitermination factor NusG [Prevotella
           buccae D17]
 gi|315251925|gb|EFU31899.1| transcription termination/antitermination factor NusG [Prevotella
           buccae ATCC 33574]
          Length = 182

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+++  S  E K  E I   +  + L    V++I IP E+  S+R G++V  E+   P
Sbjct: 7   QWYVLKAVSGKEAKVKEYIEAEMKHNELLASHVSQILIPMEKHASLRNGKRVIKEKVSLP 66

Query: 63  GYVLIKAVMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GY+ ++A +        ++  P V+GFLG  +NPSPV  SEI  ++   E         +
Sbjct: 67  GYLFVEANLKGGDIASMLRFVPNVLGFLGGLDNPSPVPQSEINRMLGTAEDTELEENLDI 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL Y QVEK
Sbjct: 127 PFVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELGYMQVEK 180


>gi|33866874|ref|NP_898433.1| transcription antitermination protein NusG [Synechococcus sp. WH
           8102]
 gi|33639475|emb|CAE08859.1| transcription antitermination protein, NusG [Synechococcus sp. WH
           8102]
          Length = 222

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+   + EI IP    V V+K   + ++E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAITLGVSKRILEIEIPQTPAVKVKKDGSRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ +E++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRAAGKARGHIKPRPLSRAEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QISK 220


>gi|32265865|ref|NP_859897.1| transcription antitermination protein NusG [Helicobacter hepaticus
           ATCC 51449]
 gi|32261914|gb|AAP76963.1| transcription termination factor NusG [Helicobacter hepaticus ATCC
           51449]
          Length = 171

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 4/175 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY +Q YS  EK   E+I   + ++ +     ++ +P+E ++  +K      +R  +P
Sbjct: 1   MEWYAIQTYSGSEKVVGEAIRNLIVQNQMQDRFGDVVVPTESIIETKKK---IVDRSLYP 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+  +  K++H I+  PKV  F+G  + P+P+++++I  I+ +V      P   + 
Sbjct: 58  GYVFIQVDLDTKLWHMIQSLPKVGRFIGESKKPTPLSEADIAKILEKVRNPS-APKPKIS 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FE GE V + DGPF +F G V+  D E  ++ + V IFGR TPVE+ Y+QVEKI+
Sbjct: 117 FEQGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRSTPVEILYSQVEKII 171


>gi|149922222|ref|ZP_01910660.1| transcription antitermination protein NusG [Plesiocystis pacifica
           SIR-1]
 gi|149816962|gb|EDM76447.1| transcription antitermination protein NusG [Plesiocystis pacifica
           SIR-1]
          Length = 176

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 103/169 (60%), Gaps = 4/169 (2%)

Query: 10  VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKA 69
            +S  E    +S+  R+ ++ L+    +I +PSE+V+  R  R+V   R+FFPGY+ ++ 
Sbjct: 3   TFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFVRM 62

Query: 70  VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----VQRPVSSVFFEV 125
            +T   +H +K+TPKV GFL +G+ P PV+  E++ ++ + E       +  V  + + V
Sbjct: 63  RLTKPAWHLVKNTPKVSGFLSSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDIDYSV 122

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G++V V  G FA+F+G V+ V+ EK ++ + V IFGR T VE+ +++VE
Sbjct: 123 GDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171


>gi|261749531|ref|YP_003257217.1| transcription termination/antitermination factor NusG
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497624|gb|ACX84074.1| transcription termination/antitermination factor NusG
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 182

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 107/178 (60%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K    I   +  +G    + ++ +P E+V+ +RKG+K++ E+  +
Sbjct: 5   ERKWYVLKTISGQESKVKSYIENEIRDNGFQEYIGKVLVPIEKVIQMRKGKKIHREKVHY 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           PGYV+I+A +  +  H IK+ P VI F   G G +  P+   E+  ++ +++   +    
Sbjct: 65  PGYVMIEAHLEGEAVHAIKNVPGVINFLSEGKGGSAIPMRKEEVNKMLGKIDQLSENYEN 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            S+ F VGE + V DGPF+ FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI
Sbjct: 125 FSIPFVVGETIKVIDGPFSGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 182


>gi|148240711|ref|YP_001226098.1| transcription antitermination protein NusG [Synechococcus sp. WH
           7803]
 gi|147849250|emb|CAK24801.1| Transcription antiterminator protein NusG [Synechococcus sp. WH
           7803]
          Length = 222

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKIKKDGSRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           QV K
Sbjct: 217 QVSK 220


>gi|306835182|ref|ZP_07468218.1| transcription antitermination protein NusG [Corynebacterium
           accolens ATCC 49726]
 gi|304568937|gb|EFM44466.1| transcription antitermination protein NusG [Corynebacterium
           accolens ATCC 49726]
          Length = 298

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 22/195 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + E+ +P E+++  + G+K   +R+  PG
Sbjct: 103 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 162

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
           YVL++A + D  +  I++TP V  F+G   N +PV   ++   +                
Sbjct: 163 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGDAAPNE 222

Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +         +  FEVGE V +  GP A+ +  +  +D E  ++   V IFG
Sbjct: 223 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 282

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL+  ++E+I
Sbjct: 283 RETPVELSPTEIERI 297


>gi|227502615|ref|ZP_03932664.1| transcription antitermination protein NusG [Corynebacterium
           accolens ATCC 49725]
 gi|227076655|gb|EEI14618.1| transcription antitermination protein NusG [Corynebacterium
           accolens ATCC 49725]
          Length = 301

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 22/195 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + E+ +P E+++  + G+K   +R+  PG
Sbjct: 106 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 165

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109
           YVL++A + D  +  I++TP V  F+G   N +PV   ++   +                
Sbjct: 166 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGEAAPNE 225

Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +         +  FEVGE V +  GP A+ +  +  +D E  ++   V IFG
Sbjct: 226 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 285

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL+  ++E+I
Sbjct: 286 RETPVELSPTEIERI 300


>gi|222823474|ref|YP_002575048.1| transcription antitermination protein NusG [Campylobacter lari
           RM2100]
 gi|222538696|gb|ACM63797.1| transcription antitermination protein NusG [Campylobacter lari
           RM2100]
          Length = 176

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q Y+  E     +I   +   G+   + E+ +P+E V+  + G++  SER  
Sbjct: 1   MNHKWYAIQTYAGSEMAVKRAIENLVRDHGIQEQLLEVIVPTEDVIEFKNGKEKISERSL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + GYV     ++ +++H I+  PKV  F+G  + P+P+++ +I  I+ +V+     P   
Sbjct: 61  YSGYVFANIDLSTELWHKIQSLPKVGRFIGESKKPTPLSEKDINLILEKVKNKA-APKPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           + F+  E V +++GPFA+F GIV+  D  +  + + V IFGR TPVE+ Y+QVEKIV
Sbjct: 120 ISFDKEESVRITEGPFANFVGIVEEYDMVRGVLKLNVSIFGRSTPVEILYSQVEKIV 176


>gi|237751211|ref|ZP_04581691.1| transcription antitermination protein nusG [Helicobacter bilis ATCC
           43879]
 gi|229372577|gb|EEO22968.1| transcription antitermination protein nusG [Helicobacter bilis ATCC
           43879]
          Length = 176

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q YS  E+   ++I   + ++   H +  I +P+E V  ++  +K   +R  
Sbjct: 1   MEFQWYAIQTYSGSEQSVKKAIENLIEQNNASHRLKNIVVPTEDVFEIKDKKKKTVQRSI 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV +   +  +++H I+  P+V  F+G  + P+P+++++I++I++++E     P   
Sbjct: 61  YPGYVFVYISLDTELWHMIQSLPRVGRFIGESKKPTPLSEADIQNILDKIENRP-APRPK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V F  GE V ++DGPFA+F G+V++ D +  ++ + V IFGR T  E+   QVEKI+
Sbjct: 120 VSFATGESVLITDGPFANFTGVVESYDIKTKKLKLNVSIFGRNTLTEINDVQVEKIL 176


>gi|255994046|ref|ZP_05427181.1| transcription termination/antitermination factor NusG [Eubacterium
           saphenum ATCC 49989]
 gi|255993714|gb|EEU03803.1| transcription termination/antitermination factor NusG [Eubacterium
           saphenum ATCC 49989]
          Length = 198

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E+K  ++I   +   G+  L+ +I IP+E  V ++ G++ + + + F G
Sbjct: 32  RWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFIG 91

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LIK  +T++ ++ +++T  V GF+G G+ P P+T  E+  +       +++ + ++  
Sbjct: 92  YILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEVRRL------GIEKVIVNLKI 145

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + G+ + V +GPF   NG V  VDEE   +  ++ +FGR TPV+L Y Q++K+
Sbjct: 146 KPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDKL 198


>gi|317968194|ref|ZP_07969584.1| transcription antitermination protein NusG [Synechococcus sp.
           CB0205]
          Length = 222

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62
           RWY VQV S+CEKK   ++  R    G+D  + EI IP    V ++K      +E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVDKRILEIEIPQTPAVKLKKDGSRTSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKVRGHIKPRPLSRQEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++PV  V    G+++ V+ GPF  F G V  V  +++++   + IFGR TPVEL ++
Sbjct: 159 E--KKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGDRNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QISK 220


>gi|87122751|ref|ZP_01078625.1| transcription antitermination protein NusG [Marinomonas sp. MED121]
 gi|86161979|gb|EAQ63270.1| transcription antitermination protein NusG [Marinomonas sp. MED121]
          Length = 149

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 1/148 (0%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G++    EI +P+E VV +R G+K  SER+F+PGYVL++  M D  +H +K T +V+GF
Sbjct: 1   MGMEDYFGEILVPTEEVVEIRDGKKRKSERKFYPGYVLVQMDMNDDSWHLVKGTSRVLGF 60

Query: 89  LGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
           +G   + PSP+T+ E + I+ +V      P     FEVGE V V DGPFA FNG+V+  D
Sbjct: 61  IGGTADKPSPITEREADAILQRVSDRADNPRPKTLFEVGEVVRVIDGPFADFNGVVEEAD 120

Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +KSR+ V V+IFGR TPV+L ++QVEK
Sbjct: 121 YDKSRIKVAVLIFGRSTPVDLEFSQVEK 148


>gi|260435130|ref|ZP_05789100.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. WH 8109]
 gi|260413004|gb|EEX06300.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. WH 8109]
          Length = 222

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V ++K      +E + FP
Sbjct: 39  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++ SE++ I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QISK 220


>gi|311693259|gb|ADP96132.1| NusG antitermination factor [marine bacterium HP15]
          Length = 159

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + ++  R++   ++    EI +P+E VV +R+G+K  SER+F+PGYVL++  M D  +H 
Sbjct: 1   MRTLRERVALHEMEDRFGEILVPTEEVVEMREGKKRKSERKFYPGYVLVQMEMDDATWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +K+TP+V+GF+G   + P+P+T+ E E I+ +VE+   +P     FE GE V V +GPFA
Sbjct: 61  VKNTPRVLGFIGGTKDKPAPITEKEAEAILRRVESGADKPKPKTLFEPGEIVRVVEGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK
Sbjct: 121 DFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 158


>gi|159902764|ref|YP_001550108.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887940|gb|ABX08154.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. MIT 9211]
          Length = 219

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 36  RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 95

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E+  I  +  
Sbjct: 96  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRPTGRGRGHIKPRPLSREEVNRIFKRTS 155

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 156 E--KKTVVKLDLSEGDQILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 213

Query: 172 QVEK 175
           Q+ K
Sbjct: 214 QINK 217


>gi|78776549|ref|YP_392864.1| transcription antitermination protein NusG [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497089|gb|ABB43629.1| transcription antitermination protein nusG [Sulfurimonas
           denitrificans DSM 1251]
          Length = 179

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 1   MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           M  +    WY +Q Y   E+    +I   +    L   +T++ +P+E V+ V+ G+K  S
Sbjct: 1   MEKKNSHQWYSIQTY-GNERTVRLAILNLIEEMRLQDFITDVIVPTEDVIEVKDGKKKIS 59

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           ER  + GYV  +  +  ++ H I+  PKV GF+G    P+P+++ +I  I+++V+     
Sbjct: 60  ERSLYSGYVFARIELNTEIQHIIQSIPKVSGFIGEANIPTPLSEHDINVILDRVQNRA-A 118

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           P   VFF+ GE V ++DGPFA+F   V   D E   + + V IFGR TPV+++Y QVEKI
Sbjct: 119 PKPKVFFDNGETVRITDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKI 178

Query: 177 V 177
           +
Sbjct: 179 I 179


>gi|307718195|ref|YP_003873727.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM
           6192]
 gi|306531920|gb|ADN01454.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM
           6192]
          Length = 184

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  Y+  E +  +++   +        + ++ +P E VV V+ G++  + R+F
Sbjct: 1   MARGWYVLHTYTGYENRVEKTLRKLMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAV 114
            PGYVL++  + D  +      I+    V GF+GT     P P++  E+  I+ +     
Sbjct: 61  LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120

Query: 115 QRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q
Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180

Query: 173 VEKI 176
           VEKI
Sbjct: 181 VEKI 184


>gi|315186342|gb|EFU20103.1| transcription antitermination protein nusG [Spirochaeta thermophila
           DSM 6578]
          Length = 184

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++  Y+  E +  +++   +        + ++ +P E VV V+ G++  + R+F
Sbjct: 1   MARGWYVLHTYTGYENRVEKTLRKFMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAV 114
            PGYVL++  + D  +      I+    V GF+GT     P P++  E+  I+ +     
Sbjct: 61  LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120

Query: 115 QRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q
Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180

Query: 173 VEKI 176
           VEKI
Sbjct: 181 VEKI 184


>gi|296119180|ref|ZP_06837750.1| transcription antitermination protein NusG [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967806|gb|EFG81061.1| transcription antitermination protein NusG [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 299

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYI+Q YS  E K   ++  R     ++  + ++ +P E+V+  + G+K   +R+  PG
Sbjct: 104 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQVLENKDGKKKLVKRKLLPG 163

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107
           YVL++  + D  +  ++DTP V  F+G   N +PV   ++   +                
Sbjct: 164 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLLPKEGAAAAGDAAANA 223

Query: 108 ------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +    +    +  + VGE V +  GPFAS +  +  +DEE  ++   V IFG
Sbjct: 224 AEGEQVISMPEKEEAKKYAHDYVVGEAVTILSGPFASVSATISEIDEETGKMVGLVSIFG 283

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL+  ++E+I
Sbjct: 284 RETPVELSPTEIERI 298


>gi|261415675|ref|YP_003249358.1| NusG antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372131|gb|ACX74876.1| NusG antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326618|gb|ADL25819.1| transcription termination/antitermination factor NusG [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 179

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 5/177 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY V  ++  E    + +   + R G+      I +P+  VVS  +G++  S +  
Sbjct: 1   MSMQWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117
           FP Y++I+  + +   H +     V  F G       P P+  SE++ ++          
Sbjct: 61  FPAYIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEG 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + + +GE VC+ +GPF  F G+V  + E K  + V V +FGR TPVELA+NQVE
Sbjct: 121 EIQIPYTIGENVCIKEGPFKGFVGVVDEIMEAK--IKVMVSVFGRSTPVELAFNQVE 175


>gi|283780331|ref|YP_003371086.1| NusG antitermination factor [Pirellula staleyi DSM 6068]
 gi|283438784|gb|ADB17226.1| NusG antitermination factor [Pirellula staleyi DSM 6068]
          Length = 267

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 100/176 (56%), Gaps = 4/176 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPG 63
           WYI++V  N E     S+  R++ +GL+    ++ +P+E V    + G++   +++ +PG
Sbjct: 92  WYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKIYPG 151

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRPVSS 120
           Y+L+  V  D+ +  +++T  +  F G    P+P+   ++E I+     +E    +  ++
Sbjct: 152 YILVNMVFNDETWFIVRETSGIGDFTGAMGKPTPMDPKDVERILRSSKMLEEDTNQVRTA 211

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F+VG+RV V +G F +F G +  +D+   RV V + IFGR TPVEL + Q+E +
Sbjct: 212 IPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267


>gi|28572873|ref|NP_789653.1| transcription antitermination protein NusG [Tropheryma whipplei
           TW08/27]
 gi|28411006|emb|CAD67391.1| transcription antitermination protein NusG [Tropheryma whipplei
           TW08/27]
          Length = 205

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V   +  E++A  ++  R+     D  + ++ +P E VV +R G++    R   PG
Sbjct: 24  KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
           YVL++  + +  +  +++TP + GF+G    P P++  E+  ++    +  Q        
Sbjct: 84  YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 143

Query: 120 ----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                V  EVGE V +  G FA   G +  +  E  R+ V + +F R TPVELA++QVEK
Sbjct: 144 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 203


>gi|325478598|gb|EGC81710.1| transcription termination/antitermination factor NusG [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 206

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+V  Y+  E +  + I   +        + E+T+P+E  V V+   K    R+ F
Sbjct: 37  SARWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 95

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV++K  +T+K ++ I++T  V GF+G    P  +T +E+     +     ++PV ++
Sbjct: 96  PGYVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVK----DEKPVLNI 151

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              VG+ V +  GPF  F   V+ +D EK  +   V +FGR T ++L +  +E I
Sbjct: 152 NVNVGDDVNIISGPFEGFVAKVEEIDSEKGTIKAFVDMFGRDTLIDLDFTDIETI 206


>gi|315452935|ref|YP_004073205.1| transcription antitermination protein nusG [Helicobacter felis ATCC
           49179]
 gi|315131987|emb|CBY82615.1| putative transcription antitermination protein nusG [Helicobacter
           felis ATCC 49179]
          Length = 177

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 2/178 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59
           M   WY +Q YS  E+   ++I   +  + +   V E+ +P+E V+ + +K +   +ER 
Sbjct: 1   MGMEWYAIQTYSGSEQAVKKAIENMVHENNIKDRVQEVIVPTEDVIELSKKSKNKVTERS 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            +PGYV IK  +   ++H I+  P+V  F+G  + P+P++D++I +I+ ++      P  
Sbjct: 61  LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGESKKPTPLSDADIGNILEKITNRA-APKP 119

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            +++E GE V + +GPFA+F   V+  D E  ++ + V IFGR T +E+ Y+QVEKI+
Sbjct: 120 KIYYEKGEVVRIIEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTLIEILYSQVEKII 177


>gi|297380385|gb|ADI35272.1| transcription termination/antitermination factor NusG [Helicobacter
           pylori v225d]
          Length = 175

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 1   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 61  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V DGPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 FFEQGEVVRVVDGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175


>gi|28493682|ref|NP_787843.1| transcription antitermination protein [Tropheryma whipplei str.
           Twist]
 gi|28476724|gb|AAO44812.1| transcription antitermination protein [Tropheryma whipplei str.
           Twist]
          Length = 217

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V   +  E++A  ++  R+     D  + ++ +P E VV +R G++    R   PG
Sbjct: 36  KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
           YVL++  + +  +  +++TP + GF+G    P P++  E+  ++    +  Q        
Sbjct: 96  YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 155

Query: 120 ----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                V  EVGE V +  G FA   G +  +  E  R+ V + +F R TPVELA++QVEK
Sbjct: 156 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 215


>gi|226328678|ref|ZP_03804196.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198]
 gi|225201864|gb|EEG84218.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198]
          Length = 147

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/146 (48%), Positives = 104/146 (71%), Gaps = 1/146 (0%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
           ++    E+ +P+E VV +R G++  SER+FFPGYVL++ VM D  +H +++ P+V+GF+G
Sbjct: 1   MEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPGYVLVQMVMNDATWHLVRNVPRVMGFIG 60

Query: 91  T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
              + P+P++D E++ IMN+++    +P     FE GE V VSDGPFA FNG+V+ VD E
Sbjct: 61  GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVSDGPFADFNGVVEEVDYE 120

Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEK 175
           KSR+ V V IFGR TPVEL ++QVEK
Sbjct: 121 KSRLKVSVSIFGRATPVELDFSQVEK 146


>gi|300871171|ref|YP_003786043.1| transcription antitermination protein NusG [Brachyspira pilosicoli
           95/1000]
 gi|300688871|gb|ADK31542.1| transcription antitermination protein, NusG [Brachyspira pilosicoli
           95/1000]
          Length = 193

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 11/184 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV      E K  E +  R+  +G+  LV +I IPSE V   + G+KV  E  F+PG
Sbjct: 10  RWYIVHTQHGYENKVRERLEKRIKENGMSDLVVDIYIPSETVQKNKNGKKVTKEEFFYPG 69

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTG------ENPSPVTDSEIEHIMNQVEAAVQR- 116
           YVL+K VM D     ++ TP V GF+G+        N  P   SE +      +   +  
Sbjct: 70  YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFEDREAKNK 129

Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                +  + FE+GE+V V DGPF   NG+++N++ +K +V V++ IFGR TP EL +N+
Sbjct: 130 NDINELIGMEFEIGEKVQVIDGPFNGLNGLIENINADKGKVTVKIEIFGRSTPTELDFNK 189

Query: 173 VEKI 176
           V+K+
Sbjct: 190 VKKL 193


>gi|69250484|ref|ZP_00605157.1| transcription antitermination protein NusG [Enterococcus faecium
           DO]
 gi|68193940|gb|EAN08510.1| transcription antitermination protein NusG [Enterococcus faecium
           DO]
          Length = 166

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%)

Query: 13  NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72
             E K   +I  R     +   +  + +P E+   V+ G++     + FPGYVL++ +MT
Sbjct: 1   GYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTFPGYVLVEMIMT 60

Query: 73  DKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
           D  ++ +++TP V GF+G+   G  P+P+   E+ HI+  +  ++++    V  EVGE V
Sbjct: 61  DASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQNDLEV--EVGEVV 118

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + +G FA   G V  VD EK ++ V + +FGR T  EL ++QV+KI
Sbjct: 119 KIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 165


>gi|291334048|gb|ADD93721.1| transcription termination/antitermination factor NusG [uncultured
           marine bacterium MedDCM-OCT-S05-C114]
          Length = 192

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY +Q  SN E K    +             ++EI +P E V  V+ G+K   +R+F+P
Sbjct: 10  RWYALQCLSNHEDKVKRYLTKYKEDDEEFASCLSEILVPIETVSEVKNGKKKQRDRKFYP 69

Query: 63  GYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           GYV ++  + D+        ++ IK+T  VI F+G  ENP+P+ D EI  I+ QV  A  
Sbjct: 70  GYVFVEMKLFDQVGNLKKKPWYKIKETDGVINFIG-RENPTPLADDEIGRILKQVNEAEG 128

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + V  V F VGE V + DGPF +  G ++ +D +K  + V V IFGR TPVEL + QVEK
Sbjct: 129 KEVPKVKFAVGEVVKILDGPFLNLTGEIEEIDPQKGTLKVSVSIFGRFTPVELEFWQVEK 188


>gi|309792762|ref|ZP_07687207.1| transcription termination/antitermination factor NusG
           [Oscillochloris trichoides DG6]
 gi|308225214|gb|EFO78997.1| transcription termination/antitermination factor NusG
           [Oscillochloris trichoides DG6]
          Length = 159

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
            +++  R+    + + +  + +P+E  + ++ G++    ++ +PGYVL++  MTD  ++ 
Sbjct: 2   KQNLEHRIDSMEMRNQIFRVIVPTEEEIEIKNGQRRTVNKKIYPGYVLVQMHMTDDSWYV 61

Query: 79  IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138
           +++TP V  F+G G  P+P+ D E++ I+ Q+E   + P   V ++ G+ V ++DGPF  
Sbjct: 62  VRNTPGVTSFVGHGNRPTPLEDDEVKTILKQMEG--EAPKVRVSYQKGQAVKITDGPFTD 119

Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           F GIV  +D E+ RV V V  FGR  PVEL + QV ++V
Sbjct: 120 FEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 158


>gi|300776006|ref|ZP_07085865.1| transcription termination/antitermination factor NusG
           [Chryseobacterium gleum ATCC 35910]
 gi|300505139|gb|EFK36278.1| transcription termination/antitermination factor NusG
           [Chryseobacterium gleum ATCC 35910]
          Length = 180

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 109/178 (61%), Gaps = 3/178 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+++  S  E K    I   + R G +  VT++ IP E+V+ +R G+KV  ER ++
Sbjct: 3   ELKWYVLKAISGQENKVKNYIETEIKRLGFEQYVTQVVIPMEKVIQIRNGKKVPKERPYY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ-RPV 118
           PGY++I+A +  ++ H IK+ P VI FL    G +P P+  SE+  ++ +++   +    
Sbjct: 63  PGYLMIEADLMGEIPHVIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFASD 122

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + + VGE V V DGPF  FNG V+ + E+K ++ V V+IFGR TP+EL+Y QVEK+
Sbjct: 123 VEIPYVVGENVKVIDGPFNGFNGTVEKILEDKKKIEVSVLIFGRKTPMELSYMQVEKV 180


>gi|109948066|ref|YP_665294.1| transcription antitermination protein NusG [Helicobacter
           acinonychis str. Sheeba]
 gi|109715287|emb|CAK00295.1| transcription antitermination protein NusG [Helicobacter
           acinonychis str. Sheeba]
          Length = 175

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    S   L   + EI +P+E ++ V +K +   +ER  +
Sbjct: 1   MDWYAIQTYSGSEQSVKKAIENLASDHDLKDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 61  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + + IFGR TP+E+ ++QVEKI+
Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNISIFGRNTPIEILHSQVEKII 175


>gi|33239683|ref|NP_874625.1| transcription antitermination protein NusG [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237208|gb|AAP99277.1| Transcription antiterminator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 219

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY +QV S+CEKK   ++  R    G+ + + EI IP    V ++K   + ++E + FP
Sbjct: 36  RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 95

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     ++ TP VI F+G  +            P P++  E+  I  +  
Sbjct: 96  GYVLVRMILDEDTMMAVRSTPNVINFVGAEDRRITGRGRGHIKPRPLSRQEVNRIFKRAA 155

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +    G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 156 E--KKTVVKLDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 213

Query: 172 QVEK 175
           Q+ K
Sbjct: 214 QISK 217


>gi|227499794|ref|ZP_03929889.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC
           35098]
 gi|227218098|gb|EEI83366.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC
           35098]
          Length = 206

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+V  Y+  E +  + I   +        + E+T+P+E  V V+   K    R+ F
Sbjct: 37  SARWYVVHTYTGYENRVKDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 95

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV++K  +T+K ++ I++T  V GF+G    P  +T  E+     +     + P+ ++
Sbjct: 96  PGYVMVKMNVTNKSWYIIRNTQGVTGFVGPDGKPVALTAQEVRKFGVK----EEAPLVNI 151

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             ++G+ + +  GPF  F   V+ +D+EK  +   V +FGR T ++L +  +E I
Sbjct: 152 DLKLGDSINIISGPFKDFVAKVEEIDKEKGTIKAFVDMFGRDTLIDLDFTDIETI 206


>gi|189502709|ref|YP_001958426.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498150|gb|ACE06697.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 186

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 7/182 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P+WY+++V S  EK     +   L R  L   V +I IPSE++  +R G++   ER FFP
Sbjct: 5   PKWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFP 64

Query: 63  GYVLIKAVMTDKVY-HTIKDTPKVIGFLG-----TGENPSPVTDSEIEHIMNQVEAAVQR 116
           GY+++ A ++D    HTIKD P  +GFLG     +   P P+ + EI  I+ +V+   + 
Sbjct: 65  GYLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAED 124

Query: 117 PVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                  F VGE V + DGPF+ F G ++ V EE+ +++V V IF R TP+EL Y QVEK
Sbjct: 125 DNGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVEK 184

Query: 176 IV 177
           I+
Sbjct: 185 IL 186


>gi|262340952|ref|YP_003283807.1| transcription antitermination protein NusG [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272289|gb|ACY40197.1| transcription antitermination protein NusG [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 184

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 107/178 (60%), Gaps = 5/178 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++  S  E K    I   +  +G    + ++ +P E+V+ +RKG+K++ E+  +PG
Sbjct: 7   KWYVIKTISGQENKVKSYIENEIRDNGFQEHIGKVLVPIEKVIQMRKGKKIHREKVHYPG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           YV+++A +  +  H IK+ P VI FL    G+   P P+   E+  ++ +++   +    
Sbjct: 67  YVMVEANLEGEAVHAIKNVPGVINFLSEGKGSSAVPIPMRKEEVNKMLGKIDELSENYEN 126

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            S+ F VGE + V DGPF  FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI
Sbjct: 127 ISIPFVVGETIKVIDGPFTGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 184


>gi|255037208|ref|YP_003087829.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053]
 gi|254949964|gb|ACT94664.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053]
          Length = 184

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 6/180 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           +  W++++  S  EKK    I   ++R  L+  V +I IPSE++  +R G+K   E+ FF
Sbjct: 3   SLNWFVLRAVSGQEKKIKSYIENEITRQKLNEFVPQILIPSEKIYEMRNGKKRVREKNFF 62

Query: 62  PGYVLIKAVMTDKVY-HTIKDTPKVIGF----LGTGENPSPVTDSEIEHIMNQVEAAVQ- 115
           PGY++I A ++     H I   P VIGF     G  + P P+  SEI  I+ +V+ A Q 
Sbjct: 63  PGYIIISADLSKGEVLHIITSIPGVIGFLGNAEGNSKVPVPLRQSEINRILGKVDEAEQH 122

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               S+ F  GE V V DGPF+ F G+V+ V +EK +++V V IFGR TPVEL+Y QVEK
Sbjct: 123 EEAPSMSFIKGETVKVVDGPFSGFIGLVEEVFDEKKKLNVVVKIFGRNTPVELSYAQVEK 182


>gi|225621220|ref|YP_002722478.1| transcription antitermination protein NusG [Brachyspira
           hyodysenteriae WA1]
 gi|225216040|gb|ACN84774.1| transcription antitermination protein NusG [Brachyspira
           hyodysenteriae WA1]
          Length = 195

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 104/184 (56%), Gaps = 11/184 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WYIV      E K  E I  R   +G+  L+ +I IPSE V S + G+KV+ E  F+PG
Sbjct: 12  KWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAAVQR--- 116
           YVL+K VM D     ++ TP V GF+G    T E  + +     E  + ++    +    
Sbjct: 72  YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFENREDKSK 131

Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                +  + F++GE+V V DGPF   NGI++N++ +K RV V++ IFGR TP EL +++
Sbjct: 132 TGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTPTELEFSK 191

Query: 173 VEKI 176
           V+K+
Sbjct: 192 VKKL 195


>gi|283457498|ref|YP_003362079.1| transcription antiterminator [Rothia mucilaginosa DY-18]
 gi|283133494|dbj|BAI64259.1| transcription antiterminator [Rothia mucilaginosa DY-18]
          Length = 248

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    I  R+     +  + E+ +P E VV  +   K    R   PGY
Sbjct: 68  WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
           VL++  +TD  +  ++ TP V GF+G    NP P+   E+  ++  V    Q        
Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +PV    + VGE V V  G F   +  V  +  E  ++ V + +FGR TPV L++ ++EK
Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247

Query: 176 I 176
           I
Sbjct: 248 I 248


>gi|188527990|ref|YP_001910677.1| transcription antitermination protein NusG [Helicobacter pylori
           Shi470]
 gi|207091668|ref|ZP_03239455.1| transcription antitermination protein NusG [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|217032213|ref|ZP_03437711.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128]
 gi|217034092|ref|ZP_03439513.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10]
 gi|298735784|ref|YP_003728309.1| transcriptional antiterminator NusG [Helicobacter pylori B8]
 gi|308183308|ref|YP_003927435.1| transcription antitermination protein NusG [Helicobacter pylori
           PeCan4]
 gi|308184950|ref|YP_003929083.1| transcription antitermination protein NusG [Helicobacter pylori
           SJM180]
 gi|188144230|gb|ACD48647.1| transcription antitermination protein NusG [Helicobacter pylori
           Shi470]
 gi|216943487|gb|EEC22941.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10]
 gi|216946084|gb|EEC24695.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128]
 gi|261838525|gb|ACX98291.1| transcription termination factor G [Helicobacter pylori 51]
 gi|298354973|emb|CBI65845.1| transcriptional antiterminator NusG [Helicobacter pylori B8]
 gi|308060870|gb|ADO02766.1| transcription antitermination protein NusG [Helicobacter pylori
           SJM180]
 gi|308062484|gb|ADO04372.1| transcription antitermination protein NusG [Helicobacter pylori
           Cuz20]
 gi|308063984|gb|ADO05871.1| transcription antitermination protein NusG [Helicobacter pylori
           Sat464]
 gi|308065493|gb|ADO07385.1| transcription antitermination protein NusG [Helicobacter pylori
           PeCan4]
 gi|317009881|gb|ADU80461.1| transcription antitermination protein NusG [Helicobacter pylori
           India7]
 gi|317012984|gb|ADU83592.1| transcription antitermination protein NusG [Helicobacter pylori
           Lithuania75]
          Length = 175

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 1   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 61  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175


>gi|320101665|ref|YP_004177256.1| NusG antitermination factor [Isosphaera pallida ATCC 43644]
 gi|319748947|gb|ADV60707.1| NusG antitermination factor [Isosphaera pallida ATCC 43644]
          Length = 285

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 104/181 (57%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++V S+ E    E++  R+   GL+    ++ +P  + V +R  +K   ER+ +PGY
Sbjct: 105 WYVLKVQSSREDSIREAMLKRVRIQGLERFFGDVVVPKRKEVEIRNNKKKIVERKTYPGY 164

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------QVEAAVQ 115
           +L++  + ++ + TI++TP V  F+G   +P+ ++ +E++ I+            EA+ +
Sbjct: 165 LLVQMELNERTWFTIRETPGVGDFVGPPGSPTKISPAEVQQILGTPSADEKVGIEEASAE 224

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                + FE G+RV + DGPF +F G V+ V   +  V V +VIF R TPV+L Y Q+E+
Sbjct: 225 PVKPKIDFERGDRVKIKDGPFENFEGTVEEVVPARGVVKVMIVIFNRPTPVDLEYWQIER 284

Query: 176 I 176
           I
Sbjct: 285 I 285


>gi|317182454|dbj|BAJ60238.1| transcription antitermination protein NusG [Helicobacter pylori
           F57]
          Length = 176

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 105/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E+ ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVERRKLKLNVSIFGRNTPIEILHSQVEKII 176


>gi|72383408|ref|YP_292763.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. NATL2A]
 gi|72003258|gb|AAZ59060.1| transcription antitermination protein nusG [Prochlorococcus marinus
           str. NATL2A]
          Length = 222

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY +QV S+CEKK   ++  R    G+   + EI IP    V ++K   +  +E + FP
Sbjct: 39  RWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E+  I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QITK 220


>gi|87306550|ref|ZP_01088697.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645]
 gi|87290729|gb|EAQ82616.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645]
          Length = 294

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 103/177 (58%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYI++V SN EK    ++  R+  +GL+    E+ +P+E +V  + G+K  ++R+ +P
Sbjct: 118 MDWYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYP 177

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPVS 119
           GY+++   + D  +  +++T  +  F G    P+P+   E+E I  +VE      +   +
Sbjct: 178 GYIVVHMAINDDTWFLVRETGGIGDFTGAAGRPTPMLAHEVERITKKVEDEETGEEPVKT 237

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++ F++G+ V +++G F +F G V+ +DE   RV V + IFGR TPVE+ + Q+E +
Sbjct: 238 NIRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294


>gi|227497153|ref|ZP_03927401.1| transcription antitermination protein [Actinomyces urogenitalis DSM
           15434]
 gi|226833410|gb|EEH65793.1| transcription antitermination protein [Actinomyces urogenitalis DSM
           15434]
          Length = 263

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63
           WY++  YS  E++    I  R     L+  V +  +P E V+ V+   +K    R   PG
Sbjct: 64  WYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKEVSRVRIPG 123

Query: 64  YVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------- 108
           YV ++  + D       + TIKDTP V GF+G   NP P+T  E    +           
Sbjct: 124 YVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYNPVPLTFDEAVSQLGPTPEEVAAKQ 183

Query: 109 ------------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
                       + +      V  V FEVGE V V+DGPF S    +  +  E  ++ V 
Sbjct: 184 AAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQVL 243

Query: 157 VVIFGRVTPVELAYNQVEKI 176
           + +FGR TP EL++ QV KI
Sbjct: 244 ISLFGRDTPAELSFTQVAKI 263


>gi|90581318|ref|ZP_01237115.1| transcription antitermination protein NusG [Vibrio angustum S14]
 gi|90437557|gb|EAS62751.1| transcription antitermination protein NusG [Vibrio angustum S14]
          Length = 150

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G++    E+ +P+E VV VR G++  SER+FFPGYVL++ VM D+ +H ++  P+V+GF
Sbjct: 2   HGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQMVMNDETWHLVRSIPRVMGF 61

Query: 89  LGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
           +G   + P+P++D E + I+N+++ A + PV    FE GE V V+DGPFA FNG +++VD
Sbjct: 62  IGGTSDRPAPISDKEADAILNRLQQASESPVHKTVFEPGEVVRVTDGPFADFNGTIESVD 121

Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +KSRV V V IFGR TPVEL + Q+EK
Sbjct: 122 YDKSRVKVSVSIFGRATPVELEFGQIEK 149


>gi|262163615|ref|ZP_06031358.1| transcription antitermination protein NusG [Vibrio mimicus VM223]
 gi|262027982|gb|EEY46644.1| transcription antitermination protein NusG [Vibrio mimicus VM223]
          Length = 148

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 104/147 (70%), Gaps = 1/147 (0%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
           ++ L  E+ +P+E VV +R G++  SER+FFPGYVL++ +M D+ +H ++  P+V+GF+G
Sbjct: 1   MEELFGEVLVPTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIG 60

Query: 91  T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
              + P+P+TD E + I+N++E A + P     FE GE V V+DGPFA FNG V+ VD E
Sbjct: 61  GTSDRPAPITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYE 120

Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
           KSR+ V V IFGR TPVEL + QVEK+
Sbjct: 121 KSRLKVSVSIFGRATPVELEFGQVEKL 147


>gi|255326801|ref|ZP_05367877.1| transcription termination/antitermination factor NusG [Rothia
           mucilaginosa ATCC 25296]
 gi|255296018|gb|EET75359.1| transcription termination/antitermination factor NusG [Rothia
           mucilaginosa ATCC 25296]
          Length = 248

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K    I  R+     +  + E+ +P E VV  +   K    R   PGY
Sbjct: 68  WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115
           VL++  +TD  +  ++ TP V GF+G    NP P+   E+  ++  V    Q        
Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +PV    + VGE V V  G F   +  V  +  E  ++ V + +FGR TPV L++ ++EK
Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247

Query: 176 I 176
           I
Sbjct: 248 I 248


>gi|281422263|ref|ZP_06253262.1| transcription termination/antitermination factor NusG [Prevotella
           copri DSM 18205]
 gi|281403768|gb|EFB34448.1| transcription termination/antitermination factor NusG [Prevotella
           copri DSM 18205]
          Length = 180

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+++  S  E K  E I   +  + L    V+++ IP E+  +VR G++V  E+   P
Sbjct: 7   KWYVLKAVSGKEAKVKEYIEAEMKHNDLLAANVSQVLIPVEKHATVRNGKRVVKEKVSLP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++A +   V HT++  P V+GFLG  + P+PV   +I  ++   E           
Sbjct: 67  GYVFVEAKLKGDVAHTLRFLPNVLGFLGGLDEPTPVPQRDINRMLGSAEETEFEENLDCP 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + V + V V +GPF+ F+GIV+ V+ EK ++ V V IFGR TP+EL + QVEK
Sbjct: 127 YLVNDTVKVMEGPFSGFSGIVEEVNAEKHKLKVTVKIFGRKTPLELGFMQVEK 179


>gi|325853515|ref|ZP_08171347.1| transcription termination/antitermination factor NusG [Prevotella
           denticola CRIS 18C-A]
 gi|327313170|ref|YP_004328607.1| transcription termination/antitermination factor NusG [Prevotella
           denticola F0289]
 gi|325484319|gb|EGC87247.1| transcription termination/antitermination factor NusG [Prevotella
           denticola CRIS 18C-A]
 gi|326944948|gb|AEA20833.1| transcription termination/antitermination factor NusG [Prevotella
           denticola F0289]
          Length = 182

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
             +WY+++  S  E K  E I  +L     L   V E+ +P E+  +VRK  K   + + 
Sbjct: 5   EKKWYVLRAVSGKEGKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
             PGYVL++A M+  V  T++  P V+GFLG   +PSPV  ++I  ++  VE      V 
Sbjct: 65  SLPGYVLVQANMSPDVASTLRFMPNVLGFLGGMSDPSPVRQADINRLLGNVEETELDEVQ 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + + VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 DIPYLVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180


>gi|325269552|ref|ZP_08136168.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
 gi|324988171|gb|EGC20138.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
          Length = 182

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
             +WY+++  S  E K  E I  +L     L   V E+ +P E+  +VRK  K   + + 
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
             PGYVL++A MT  V  T++  P V+GFLG   +PSPV  ++I  ++  VE      V 
Sbjct: 65  SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMADPSPVRQADINRLLGNVEDTELDEVQ 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V + VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 EVPYMVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180


>gi|302345056|ref|YP_003813409.1| transcription termination/antitermination factor NusG [Prevotella
           melaninogenica ATCC 25845]
 gi|302149542|gb|ADK95804.1| transcription termination/antitermination factor NusG [Prevotella
           melaninogenica ATCC 25845]
          Length = 182

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
             +WY+++  S  E K  E I  +L     L   V E+ +P E+  +VRK  K   + + 
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
             PGYVL++A MT  V  T++  P V+GFLG    PSPV  ++I  ++  VE      V 
Sbjct: 65  SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQ 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +V + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 NVPYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180


>gi|57242443|ref|ZP_00370381.1| transcription termination/antitermination factor NusG
           [Campylobacter upsaliensis RM3195]
 gi|315639013|ref|ZP_07894183.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Campylobacter upsaliensis JV21]
 gi|57016728|gb|EAL53511.1| transcription termination/antitermination factor NusG
           [Campylobacter upsaliensis RM3195]
 gi|315480925|gb|EFU71559.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Campylobacter upsaliensis JV21]
          Length = 177

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY +Q Y+  E     +I   +  + ++  + EI +P+E V+  + G++  SER  +
Sbjct: 3   EHKWYAIQTYAGSEMAVKRAIENLVKDNKIEERLKEIVVPTEDVIEFKNGKEKISERSLY 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV     +  +++H I+  PKV  F+G  +NP+P+++ +I  I+ +       P   +
Sbjct: 63  SGYVFANLNLDTELWHRIQSLPKVGRFIGESKNPTPLSEKDINLILEKAYNKA-APKPKI 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            FE GE V +++GPFA+F GIV+  D  +  + + V IFGR TPVE+ Y+QVEK++
Sbjct: 122 SFEEGENVRITEGPFANFTGIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKVI 177


>gi|149195233|ref|ZP_01872323.1| transcription antitermination protein NusG [Caminibacter
           mediatlanticus TB-2]
 gi|149134666|gb|EDM23152.1| transcription antitermination protein NusG [Caminibacter
           mediatlanticus TB-2]
          Length = 179

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY +QVYS  E    ++I        L+  + +I +P+E V+ V+ G+K   ER  +PG
Sbjct: 7   KWYALQVYSGSELAVKKAIENLKKELHLEDKIGQIIVPTEEVIEVKNGKKKIFERSIYPG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV ++A +   ++H I+  PKV  F+G  + P+P+   +IE I+ + +     P   V F
Sbjct: 67  YVFLEADLDTALWHKIQSLPKVGRFIGESKKPTPLKKEDIELILQKAKQKT-APKPKVSF 125

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           E GE V +++GPFA+F G V++ D EK  + + V IFGR TPVE+ Y +VEKIV
Sbjct: 126 EEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 179


>gi|157738108|ref|YP_001490792.1| transcription antitermination protein NusG [Arcobacter butzleri
           RM4018]
 gi|315636460|ref|ZP_07891702.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
 gi|157699962|gb|ABV68122.1| transcription termination factor NusG [Arcobacter butzleri RM4018]
 gi|315479241|gb|EFU69932.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
          Length = 175

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY +Q YS  E    +++         D  + E+ +P+E ++ ++KG+K   ER  
Sbjct: 1   MAHKWYAIQTYSGSELSVKKALIKLAEEMA-DDRIQEVLVPTEDLIEIKKGKKTIVERPL 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P Y   K  +   ++H I+  PKV  F+G  + P+ ++D +I  I+ +V+         
Sbjct: 60  YPAYAFAKIDLDTGLWHRIQSMPKVGRFIGESKKPTALSDKDINLILEKVKNRAAA-KPK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V F+ GE V +++G FA+FNG+V++ D     + + V IFGR TPVE++Y QVE+IV
Sbjct: 119 VSFDTGEMVRINEGAFANFNGLVEDFDMVSGILKLNVSIFGRNTPVEISYTQVERIV 175


>gi|167753046|ref|ZP_02425173.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216]
 gi|167659360|gb|EDS03490.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216]
          Length = 186

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 109/181 (60%), Gaps = 7/181 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V+     E K  E I   +  S L+  ++++ IP+E+V ++R G+KV+ E+  +
Sbjct: 5   AKQWYVVRTIGGKENKVKEYIESEIRHSHLEEYISQVLIPTEKVYTIRNGKKVSKEKVSY 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------PSPVTDSEIEHIMNQVEA-AV 114
           PGYVLI+A    ++   I++ P V+GFLG  +        +P+   E+  I+ +V+  + 
Sbjct: 65  PGYVLIEAAFVGQIPIIIRNIPNVLGFLGDTKEDSRKMIATPLRPQEVSRILGRVDELSS 124

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               + + F VGE + V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVE
Sbjct: 125 MEEENEIPFFVGETIKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVE 184

Query: 175 K 175
           K
Sbjct: 185 K 185


>gi|124024994|ref|YP_001014110.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. NATL1A]
 gi|123960062|gb|ABM74845.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. NATL1A]
          Length = 222

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY +QV S+CEKK   ++  R    G+   + EI IP    V ++K   +  +E + FP
Sbjct: 39  RWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVFP 98

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E+  I  +  
Sbjct: 99  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKRAA 158

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E G+++ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 159 E--KKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216

Query: 172 QVEK 175
           Q+ K
Sbjct: 217 QITK 220


>gi|15645817|ref|NP_207994.1| transcription antitermination protein NusG [Helicobacter pylori
           26695]
 gi|108563567|ref|YP_627883.1| transcription antitermination protein NusG [Helicobacter pylori
           HPAG1]
 gi|208435099|ref|YP_002266765.1| transcription termination factor [Helicobacter pylori G27]
 gi|2499340|sp|P55976|NUSG_HELPY RecName: Full=Transcription antitermination protein nusG
 gi|2314365|gb|AAD08249.1| transcription termination factor NusG (nusG) [Helicobacter pylori
           26695]
 gi|107837340|gb|ABF85209.1| transcription termination factor NusG [Helicobacter pylori HPAG1]
 gi|208433028|gb|ACI27899.1| transcription termination factor [Helicobacter pylori G27]
 gi|317177947|dbj|BAJ55736.1| transcription antitermination protein NusG [Helicobacter pylori
           F16]
          Length = 176

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176


>gi|295093315|emb|CBK82406.1| transcription antitermination protein nusG [Coprococcus sp.
           ART55/1]
          Length = 175

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K    I        L   + E+ +P E    ++ G+  + ER+  PG
Sbjct: 8   RWYVVHTYSGYENKVKADIEKTKENRNLQDQILEVVVPVEDATEIKNGKPKSIERKILPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI  +M D  ++ +++T  V GF+G+          E    + Q    V      +  
Sbjct: 68  YVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTDEELSNLYQTSEEV-----VIDV 122

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ + V+ G +      +K ++  K  V +EV +FGRV  V++A+  ++K+
Sbjct: 123 EVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 175


>gi|288803797|ref|ZP_06409224.1| transcription termination/antitermination factor NusG [Prevotella
           melaninogenica D18]
 gi|288333704|gb|EFC72152.1| transcription termination/antitermination factor NusG [Prevotella
           melaninogenica D18]
          Length = 182

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59
             +WY+++  S  E K  E I  +L     L   V E+ +P E+  +VRK  K   + + 
Sbjct: 5   EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
             PGYVL++A MT  V  T++  P V+GFLG    PSPV  ++I  ++  VE      V 
Sbjct: 65  SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQ 124

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +V + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR  P+EL++ QV K
Sbjct: 125 NVSYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180


>gi|284039331|ref|YP_003389261.1| NusG antitermination factor [Spirosoma linguale DSM 74]
 gi|283818624|gb|ADB40462.1| NusG antitermination factor [Spirosoma linguale DSM 74]
          Length = 186

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 8/180 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++  S  EKK    +   + R  LD ++ ++ IP+E+V  +R G+K   E+ FFPG
Sbjct: 5   QWYVIRAVSGQEKKIKSYLDNEIIRQKLDEVIPQVLIPAEKVYEMRNGKKRVREKSFFPG 64

Query: 64  YVLIKAVM-TDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEAAVQR 116
           Y+LI A +  ++    I + P V+GFLG  +       P P+  +E+  I+ +V+   Q 
Sbjct: 65  YILISADLGNNRALDMILNMPGVLGFLGNSQAGTTSKVPVPLRQAEVNRILGKVDEEAQE 124

Query: 117 PV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               +V +  GE V V DGPF  F G V+ V +++ +V+V V IFGR TPVEL+Y QVEK
Sbjct: 125 VAAPTVAYIKGESVKVVDGPFGGFIGTVEEVFDDRKKVNVVVKIFGRNTPVELSYAQVEK 184


>gi|210623165|ref|ZP_03293615.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275]
 gi|210153778|gb|EEA84784.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275]
          Length = 180

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRF 60
             +WY+V  YS  E K   +I   +   G+++++T + +P+E VV           +R+ 
Sbjct: 6   EAKWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKV 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P YVLIK ++TD+ ++ +++T  V GF+G G  P P+++ E+   M     A +     
Sbjct: 66  YPSYVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEVIA-MGIELPAQEVVGGD 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE G+ V + +G FA   G V+ V+ EK  V +   IFGR +PV +    +EKI
Sbjct: 125 VDFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIEKI 180


>gi|317178500|dbj|BAJ56288.1| transcription antitermination protein NusG [Helicobacter pylori
           F30]
          Length = 176

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+   +V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLSRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176


>gi|307637877|gb|ADN80327.1| Transcription antitermination protein [Helicobacter pylori 908]
 gi|317014591|gb|ADU82027.1| transcription antitermination protein NusG [Helicobacter pylori
           Gambia94/24]
 gi|325996474|gb|ADZ51879.1| Transcription antitermination protein [Helicobacter pylori 2018]
 gi|325998063|gb|ADZ50271.1| Transcription antitermination protein [Helicobacter pylori 2017]
          Length = 175

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 1   MDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 61  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175


>gi|296126978|ref|YP_003634230.1| NusG antitermination factor [Brachyspira murdochii DSM 12563]
 gi|296018794|gb|ADG72031.1| NusG antitermination factor [Brachyspira murdochii DSM 12563]
          Length = 195

 Score =  138 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 11/184 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV      E K  E I  R   +G+  L+ +I IPSE V S + G+KV+ E  F+PG
Sbjct: 12  RWYIVHTQHGYENKVRERIEKRTKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTG------ENPSPVTDSEIEHIMNQVEAAVQ-- 115
           YVL+K VM D     ++ TP V GF+G+        N  P   SE +          +  
Sbjct: 72  YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFENRDEKSK 131

Query: 116 ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                +  + F++GE+V V DGPF   NG+++N++ +K RV V++ IFGR TP EL +++
Sbjct: 132 TEINEIIGMEFDIGEKVQVIDGPFNGLNGVIENINSDKGRVTVKIEIFGRSTPTELEFSK 191

Query: 173 VEKI 176
           V+K+
Sbjct: 192 VKKL 195


>gi|218133816|ref|ZP_03462620.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991191|gb|EEC57197.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC
           43243]
          Length = 194

 Score =  138 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 2/177 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRF 60
            PRWY+V  YS  E K ++SI   ++   L+  + ++ +P E V  +R        ER+ 
Sbjct: 18  EPRWYVVHTYSGYENKVMDSISKTIANRHLEDQILDVRVPVETVYELRANGTKKAVERKI 77

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
           FPGYVL+  VM +  ++ +++   V GF+G G  P P+T+ E++        + +     
Sbjct: 78  FPGYVLVNMVMNEDTWYVVRNIRGVTGFVGPGSKPVPLTEEEMKPYGLTSNDSSESDKNV 137

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V  +VG+ V V+ G +A     +++V+E +  V + V +F R TPVE+++++V+K+
Sbjct: 138 VVNLKVGDIVTVTGGAWAGSVKAIQSVNESRQTVTINVDMFSRETPVEISFSEVKKM 194


>gi|224372227|ref|YP_002606599.1| transcription antitermination protein NusG [Nautilia profundicola
           AmH]
 gi|223589544|gb|ACM93280.1| transcription termination/antitermination factor NusG [Nautilia
           profundicola AmH]
          Length = 174

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 105/175 (60%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY +QVYS  E    ++I    +   L  ++ E+ +P+E V+ V+ G+K   ER  +P
Sbjct: 1   MNWYALQVYSGSELSVKKAIENLKNELNLHDVIGEVIVPTEEVIEVKNGKKKIFERSIYP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++A +  +++H I+  PKV  F+G  + P+P+   +IE I+ + +     P   V 
Sbjct: 61  GYVFLEADLDTELWHKIQSLPKVGRFIGESKKPTPLKKEDIELILEKAKTKT-APKPKVS 119

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FE GE V +++GPFA+F G V++ D EK  + + V IFGR TPVE+ Y +VEKIV
Sbjct: 120 FEEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 174


>gi|317180930|dbj|BAJ58716.1| transcription antitermination protein NusG [Helicobacter pylori
           F32]
          Length = 176

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   VK  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVKEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176


>gi|15612191|ref|NP_223843.1| transcription antitermination protein NusG [Helicobacter pylori
           J99]
 gi|11387011|sp|Q9ZK20|NUSG_HELPJ RecName: Full=Transcription antitermination protein nusG
 gi|4155723|gb|AAD06704.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Helicobacter pylori J99]
          Length = 176

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +    ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ Y+QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKII 176


>gi|317011405|gb|ADU85152.1| transcription antitermination protein NusG [Helicobacter pylori
           SouthAfrica7]
          Length = 175

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 1   MDWYAIQTYSGSEQSVKKAIENLANDHNIRGRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 61  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175


>gi|296274146|ref|YP_003656777.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299]
 gi|296098320|gb|ADG94270.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299]
          Length = 175

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 2/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY +Q +S  E     ++  RL+    D  + ++ +P+E ++ V+KG K   ER  
Sbjct: 1   MAHLWYAIQTHSGSELTVKRALV-RLADEMADGKIADVLVPTEDLIEVKKGNKTIVERPL 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P Y   K  +   ++H I+  PKV  F+G  + P+P+++ +I  I+++V          
Sbjct: 60  YPAYAFAKIDLDTALWHRIQSMPKVGRFIGESKKPTPLSEKDINSILDKVNNRAAA-KPK 118

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V F+ GE V +++GPFA+FNGIV+  D     + + V IFGR TPVE++Y QVE++V
Sbjct: 119 VSFDDGEMVRINEGPFANFNGIVEEFDIASGILKLNVSIFGRNTPVEISYTQVERVV 175


>gi|325280613|ref|YP_004253155.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
 gi|324312422|gb|ADY32975.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
          Length = 182

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 114/176 (64%), Gaps = 3/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+++V    EKK  E I   ++  GL   V+++ IP+E++  VR G+K++ ER FFP
Sbjct: 6   KRWYVLRVIGGKEKKVKEYIENEVASLGLQDYVSQVLIPTEKIYQVRNGKKISKERNFFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
           GYV+I+A +  ++ H ++D   VIGFLG   G +P P+  SEI  I+  V+   ++P   
Sbjct: 66  GYVMIEAALVGEIPHMLRDITNVIGFLGETKGGDPVPMRQSEINRILGTVDELSEQPEEI 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           ++ + VGE V V+DGPF  F G+++ V+ +K RV V V +FGR TP+EL++ QVEK
Sbjct: 126 NIPYVVGESVKVTDGPFNGFTGVIEEVNNDKKRVKVIVKVFGRQTPLELSFMQVEK 181


>gi|254779750|ref|YP_003057856.1| transcription antitermination protein NusG [Helicobacter pylori
           B38]
 gi|254001662|emb|CAX29843.1| Transcription antitermination protein NusG [Helicobacter pylori
           B38]
          Length = 176

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +   +ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176


>gi|113953085|ref|YP_731916.1| transcription antitermination protein NusG [Synechococcus sp.
           CC9311]
 gi|113880436|gb|ABI45394.1| transcription termination/antitermination factor NusG
           [Synechococcus sp. CC9311]
          Length = 192

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+ + + EI IP    V V+K   + ++E + FP
Sbjct: 9   RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ V+ +     ++ TP VI F+G  +            P P++  E++ I  +  
Sbjct: 69  GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKRAA 128

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  V    G+++ V+ GPF  F G V  V  E+S++   + IFGR TPVEL ++
Sbjct: 129 E--KKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 186

Query: 172 QVEK 175
           Q+ K
Sbjct: 187 QISK 190


>gi|255534434|ref|YP_003094805.1| Transcription antitermination protein NusG [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340630|gb|ACU06743.1| Transcription antitermination protein NusG [Flavobacteriaceae
           bacterium 3519-10]
          Length = 180

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 110/176 (62%), Gaps = 3/176 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++  S  E K    I   +   G +  VT++ IP E+V+ ++ G+KV  E+ ++PG
Sbjct: 5   KWYVLKSISGQENKVKTYIENEMKHHGFEAFVTQVVIPMEKVIQLKNGKKVPKEKPYYPG 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120
           Y++++A +  ++ H IK+ P VI FL    G +P P+  SE+  ++ +++   +    +S
Sbjct: 65  YLMVEANLVGEIPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFAVETS 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + F VGE V V DGPF  FNG ++ + E+K +V V V+IFGR TP+EL+Y QVEK+
Sbjct: 125 IPFVVGENVKVIDGPFNGFNGTIEKLHEDKKKVEVSVMIFGRKTPMELSYMQVEKV 180


>gi|260880966|ref|ZP_05403283.2| transcription termination/antitermination factor NusG [Mitsuokella
           multacida DSM 20544]
 gi|260850064|gb|EEX70071.1| transcription termination/antitermination factor NusG [Mitsuokella
           multacida DSM 20544]
          Length = 184

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K   ++   +  + + +++  + +P E  V ++ G+K    R+ FPGY
Sbjct: 18  WYVIHTYSGYENKVKANLERLIHTANMGNMIFNVVVPVEDEVEIKDGKKKVVPRKVFPGY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+  ++ +  ++ +++T  V GF+G+ ++P P+TD+E + I+  +    +     +   
Sbjct: 78  VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTDAEAKRILKSMGEEQEH-KPELDVA 136

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V ++ G F ++ G V  +D EK+R+ V V      TP+EL ++QVE
Sbjct: 137 VGDVVRINSGVFENYTGTVSEIDTEKARLKVIVE----ETPIELGFDQVE 182


>gi|125625148|ref|YP_001033631.1| transcription antitermination protein NusG [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124493956|emb|CAL98951.1| transcription antitermination protein nusG [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071956|gb|ADJ61356.1| transcription antitermination protein NusG [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 185

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 3/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++Q Y+  E+K  E +  R     +   +  + IP+E + +   G+  + E   FPGY
Sbjct: 13  WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKIKDVEENLFPGY 72

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFF 123
           VL++  MTD+ +  +++TP V GF+G+  N S  T    + I + +    +         
Sbjct: 73  VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKIVREIDFDV 132

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+RV + DG F+ F   +  ++ +K  + + V +FGR TPVEL  +Q+E I
Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIEDI 183


>gi|210135361|ref|YP_002301800.1| transcription antitermination protein NusG [Helicobacter pylori
           P12]
 gi|210133329|gb|ACJ08320.1| transcription antitermination protein NusG [Helicobacter pylori
           P12]
          Length = 176

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   ++I    +   +   + EI +P+E ++ V +K +    ER  +
Sbjct: 2   MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLY 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  PKV  F+G  + P+P+++++I HI+ ++      P   +
Sbjct: 62  PGYVFIKVDLDTVLWHKIQSLPKVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           FFE GE V V +GPFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEKI+
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176


>gi|332182027|gb|AEE17715.1| NusG antitermination factor [Treponema brennaborense DSM 12168]
          Length = 185

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WYI+  Y+  E K   +I   L    L    V +I +P E VV ++ G+K  S ++
Sbjct: 1   MAKGWYILHTYTGYEGKIERTIRSLLETGDLSSEAVLDIKVPVEEVVEIKDGKKKTSTKK 60

Query: 60  FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAA 113
           F PGY++++  + D  +      I+    V GF+GTG  E P P++  E + ++ +    
Sbjct: 61  FLPGYIMLELDLPDIGWKAVCSVIRRIQGVTGFVGTGPSERPRPISLEEAKSLLQKSGEI 120

Query: 114 --VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              +       F VGE+V + +G FA+F+G ++ V+ EK+++ V V IFGR TPVE+   
Sbjct: 121 KGEKTARLKQSFSVGEQVKIIEGAFATFSGTIEEVNLEKNKLRVMVQIFGRATPVEVDLL 180

Query: 172 QVEKI 176
           QVEKI
Sbjct: 181 QVEKI 185


>gi|116513058|ref|YP_811965.1| transcription antitermination protein NusG [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116108712|gb|ABJ73852.1| Transcription antiterminator [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 185

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 3/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++Q Y+  E+K  E +  R     +   +  + IP+E + +   G+  + E   FPGY
Sbjct: 13  WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKDVEENLFPGY 72

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-SEIEHIMNQVEAAVQRPVSSVFF 123
           VL++  MTD+ +  +++TP V GF+G+  N S  T   E E     V             
Sbjct: 73  VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+RV + DG F+ F   +  ++ +K  + + V +FGR TPVEL  +Q+E I
Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIEDI 183


>gi|307565696|ref|ZP_07628165.1| transcription termination/antitermination factor NusG [Prevotella
           amnii CRIS 21A-A]
 gi|307345522|gb|EFN90890.1| transcription termination/antitermination factor NusG [Prevotella
           amnii CRIS 21A-A]
          Length = 181

 Score =  137 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+++  S  E K  E I  +L   S L   V E+ +P E+  S+R G++V  E+   P
Sbjct: 7   KWYVLRAISGKESKVKEYIDAQLRMNSKLAERVFEVLLPMEKHTSLRNGKRVVKEKLSLP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL++A MT  V  T++  P V+GFLG    P+PV  +++  ++  VE      +  V 
Sbjct: 67  GYVLVQANMTPDVASTLRFIPNVLGFLGGTSEPTPVRQADVNRLLGNVEDVEAGNMQDVP 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + VGE V V +GPF+ F+G++++V+ EK ++ V V+IFGR  P+EL++ QV +
Sbjct: 127 YNVGESVKVIEGPFSGFHGVIEDVNTEKHKLKVMVMIFGRQNPLELSFMQVAR 179


>gi|15674086|ref|NP_268261.1| transcription antitermination protein NusG [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281492764|ref|YP_003354744.1| transcription antitermination protein NusG [Lactococcus lactis
           subsp. lactis KF147]
 gi|14423796|sp|Q9CDV7|NUSG_LACLA RecName: Full=Transcription antitermination protein nusG
 gi|12725158|gb|AAK06202.1|AE006438_16 transcription antitermination protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281376416|gb|ADA65902.1| Transcription antitermination protein NusG [Lactococcus lactis
           subsp. lactis KF147]
 gi|326407637|gb|ADZ64708.1| transcriptional antiterminator NusG [Lactococcus lactis subsp.
           lactis CV56]
          Length = 185

 Score =  137 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++Q Y+  E+K  E +  R     +   +  + IP+E + +   G+    E   FPGY
Sbjct: 13  WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-SEIEHIMNQVEAAVQRPVSSVFF 123
           VL++  MTD+ +  +++TP V GF+G+  N S  T   E E     V             
Sbjct: 73  VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+RV + DG F+ F   +  ++ +K  + + V +FGR TPVEL  +Q+E I
Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIEDI 183


>gi|291544032|emb|CBL17141.1| transcription antitermination protein nusG [Ruminococcus sp. 18P13]
          Length = 175

 Score =  137 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 5/175 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY++  YS  E K  + I   +    L  L+ E+ +P+E+V  +  G+    ER+ +
Sbjct: 4   AAKWYVIHTYSGYENKVAQDIEKVVENRKLHDLILEVKVPTEKVTEITDGKTKEVERKTY 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K V TD  ++ +++T  V GF+G    P+P+T+ E+  +  +  + VQ     V
Sbjct: 64  PGYVLLKMVYTDDSWYVVRNTRGVTGFVGPASEPTPLTEKEVAALGVETGSTVQ-----V 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F VG+ V VS      F GIV++++ E   V V + +FGR TP  LA NQV K+
Sbjct: 119 NFAVGDSVKVSGTAMDGFVGIVQSINLEDQTVDVMISMFGRETPATLALNQVIKL 173


>gi|282879912|ref|ZP_06288637.1| transcription termination/antitermination factor NusG [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306214|gb|EFA98249.1| transcription termination/antitermination factor NusG [Prevotella
           timonensis CRIS 5C-B1]
          Length = 181

 Score =  137 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 1/176 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY+++  +  E K  E I   +  + L    V++I IP E+  ++R G++V  E+   
Sbjct: 6   MNWYVLRAVNGKEAKLKEYIEAEMKHNTLLQQHVSQILIPMEKHAALRNGKRVEKEKISL 65

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ ++A +   V HT++  P  +GFLG  +NPSPV  SEI  ++  VE         V
Sbjct: 66  PGYIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGDVEETEITNDVEV 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            +EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QV+K V
Sbjct: 126 PYEVDEVVTVTDGPFSGFSGVIEEVNVEKHKLKVMVKIFGRKTPLELSFMQVQKEV 181


>gi|163815635|ref|ZP_02207008.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759]
 gi|158449272|gb|EDP26267.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759]
          Length = 179

 Score =  137 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  YS  E K    I        L   + E+ +P E    ++ G+  + ER+  PG
Sbjct: 12  RWYVVHTYSGYENKVKADIEKTKENRNLQDQIIEVVVPVEDATEIKNGKPKSIERKILPG 71

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVLI  +M D  ++ +++T  V GF+G+          E    + Q    V      +  
Sbjct: 72  YVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTEEELSNLYQTSDEV-----VIDV 126

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           EVG+ + V+ G +      +K ++  K  V +EV +FGRV  V++A+  ++K+
Sbjct: 127 EVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 179


>gi|157412563|ref|YP_001483429.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9215]
 gi|254525769|ref|ZP_05137821.1| transcription termination/antitermination factor NusG
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387138|gb|ABV49843.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. MIT 9215]
 gi|221537193|gb|EEE39646.1| transcription termination/antitermination factor NusG
           [Prochlorococcus marinus str. MIT 9202]
          Length = 203

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY +QV S+CEKK   ++  R    G+++ + EI IP    + ++K   +  +E + FP
Sbjct: 20  RWYAIQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     +K TP VI F+G  +            P P++  E+  I  +  
Sbjct: 80  GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E  +R+ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 140 E--KKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197

Query: 172 QVEK 175
           Q+ K
Sbjct: 198 QISK 201


>gi|124005807|ref|ZP_01690645.1| transcription termination/antitermination factor NusG [Microscilla
           marina ATCC 23134]
 gi|123988490|gb|EAY28131.1| transcription termination/antitermination factor NusG [Microscilla
           marina ATCC 23134]
          Length = 189

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 11/183 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  ++ EKKA   +   +++      V ++ IPSE+V  +R G+K   E+ FFPG
Sbjct: 5   KWYVVRAIASKEKKAKTYLENEIAKREFHEHVPQVLIPSEKVYEMRNGKKRLREKSFFPG 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLG----------TGENPSPVTDSEIEHIMNQVEAA 113
           Y++++A +      T +    +    G          T ++P  +  SE+  I+ +V+ +
Sbjct: 65  YIMVQANLEKDNPTTGELIHMITSIPGIIGFLGATGSTSKDPVALRQSEVNRILGKVDES 124

Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            +  V     F VGE V V DGPF  F G V+ V EE+ +++V V IFGR TPVEL Y+Q
Sbjct: 125 AEDDVKLETTFIVGETVKVIDGPFNGFTGTVEEVFEERQKINVMVKIFGRNTPVELNYSQ 184

Query: 173 VEK 175
           VEK
Sbjct: 185 VEK 187


>gi|78778593|ref|YP_396705.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712092|gb|ABB49269.1| transcription antitermination protein nusG [Prochlorococcus marinus
           str. MIT 9312]
          Length = 203

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+++ + EI IP    + ++K   +  +E + FP
Sbjct: 20  RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     +K TP VI F+G  +            P P++  E+  I  +  
Sbjct: 80  GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E  +R+ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 140 E--KKAVIKLDIEEKDRILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197

Query: 172 QVEK 175
           Q+ K
Sbjct: 198 QINK 201


>gi|126695563|ref|YP_001090449.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542606|gb|ABO16848.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. MIT 9301]
          Length = 203

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+++ + EI IP    + ++K   +  +E + FP
Sbjct: 20  RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     +K TP VI F+G  +            P P++  E+  I  +  
Sbjct: 80  GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E  +R+ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 140 E--KKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197

Query: 172 QVEK 175
           Q+ K
Sbjct: 198 QINK 201


>gi|297184066|gb|ADI20185.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 182

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+++  S  E+K    I   ++ +G+  LV  + IP E+VV VR G+KV  E+   P
Sbjct: 6   MKWYVLRTISGQEQKTKTYIEKDMAHAGMSDLVGRVLIPLEKVVQVRNGKKVIKEKTRTP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS- 119
           GY+ I+AV+T +V H IK+ P V+GFL    GE+PSP+  SE+  ++ +V+   +     
Sbjct: 66  GYMYIEAVLTGEVSHMIKNLPNVVGFLSNVKGEDPSPMRASEVSRLLGEVDRQAENAAML 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + F +GE V V +GPF++F+  ++ ++EEK ++ V V IFGR TPVEL + +VEK+
Sbjct: 126 MIPFTLGETVKVINGPFSTFDATIEKINEEKQKLEVTVKIFGRKTPVELGFTEVEKL 182


>gi|306820720|ref|ZP_07454347.1| transcription termination/antitermination factor NusG [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304551219|gb|EFM39183.1| transcription termination/antitermination factor NusG [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 177

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 4/172 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  YS  E K   S+   +   G+   +  + IP E VV  +KG +   +R+ FPGY
Sbjct: 9   WYVVHTYSGYENKVKTSLEKTIENLGMQEYIQNVVIPEENVVENKKGIEKIRKRKIFPGY 68

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VLIK V+TD  ++ +++T  V GF+G    P P+TD E+     ++    +  V +V FE
Sbjct: 69  VLIKMVVTDDSWYLVRNTKGVTGFVGANSKPIPLTDEEV----AKMRLEEEIYVGNVNFE 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ + +  GPF S    +  + E+KS V  ++ +FG+ T +EL ++Q++KI
Sbjct: 125 EGDNIIILGGPFDSREAKIIKIMEDKSMVKAQMSMFGKETTIELGFSQIKKI 176


>gi|113474161|ref|YP_720222.1| transcription antitermination protein NusG [Trichodesmium
           erythraeum IMS101]
 gi|110165209|gb|ABG49749.1| transcription antitermination protein nusG [Trichodesmium
           erythraeum IMS101]
          Length = 224

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 21/195 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    +   + G + +SE + 
Sbjct: 28  ELRWYAVQVASGCEKRVKTNLSQRIQTLDITDKIFKVEIPHIAAIKLRKDGSRQHSEEKV 87

Query: 61  FPGYVLIKAVMT-----------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---- 105
           FPGYVL++  +            D+ +  +K TP VI F+G  +                
Sbjct: 88  FPGYVLVQMKLNWHEEQKEWRIDDEAWQIVKSTPNVINFVGAEQKRRYGRGRGHVKPLPL 147

Query: 106 -----IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                      A  Q P   V    G+ + V  GPF  F G V  V  E++++   + IF
Sbjct: 148 SSSEVERIFRRAQEQEPYLKVTVAEGDHITVLSGPFKDFEGDVIEVSPERNKLKALLSIF 207

Query: 161 GRVTPVELAYNQVEK 175
           GR TPVEL +NQVEK
Sbjct: 208 GRDTPVELEFNQVEK 222


>gi|123965469|ref|YP_001010550.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199835|gb|ABM71443.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. MIT 9515]
          Length = 203

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+++ + EI IP    + ++K   +  +E + FP
Sbjct: 20  RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     +K TP VI F+G  +            P P++  E+  I  +  
Sbjct: 80  GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E  +R+ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 140 E--KKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197

Query: 172 QVEK 175
           Q+ K
Sbjct: 198 QINK 201


>gi|123967760|ref|YP_001008618.1| transcription antitermination protein NusG [Prochlorococcus marinus
           str. AS9601]
 gi|123197870|gb|ABM69511.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus str. AS9601]
          Length = 203

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+++ + EI IP    + ++K   +  +E + FP
Sbjct: 20  RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     +K TP VI F+G  +            P P++  E+  I  +  
Sbjct: 80  GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E  +R+ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 140 E--KKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197

Query: 172 QVEK 175
           Q+ K
Sbjct: 198 QINK 201


>gi|257066639|ref|YP_003152895.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548]
 gi|256798519|gb|ACV29174.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548]
          Length = 207

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 5/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  Y+  E +  + I   +        + E+T+P+E  V V+   K    R+ FPG
Sbjct: 40  RWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLFPG 98

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  +T+K ++ I++T  V GF+G    P  +T +E+     +     + P+ ++  
Sbjct: 99  YVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVK----DEAPILNINV 154

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+ V +  GPF  F   V+ VD+EK  +   V +FGR T ++L +  +E I
Sbjct: 155 NVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIETI 207


>gi|228470334|ref|ZP_04055238.1| transcription termination/antitermination factor NusG
           [Porphyromonas uenonis 60-3]
 gi|228308077|gb|EEK16952.1| transcription termination/antitermination factor NusG
           [Porphyromonas uenonis 60-3]
          Length = 180

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 6/179 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            R+Y+++V S  EKK  E I    S   L   V  + +P+E+VVS R G+KV  ER + P
Sbjct: 1   MRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP 117
           GYVL++A +     HT+   P VIGFL +  +     P P+   E++ ++ Q +   +  
Sbjct: 61  GYVLVEAALVGDTEHTLCTIPNVIGFLTSRMSDGQLAPEPLRTQEVQDLLGQADRDAEGA 120

Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               + + VGE V + DGPF+ F+  +  V  +K ++ V V IFGR TP+EL Y QVEK
Sbjct: 121 GRFDIEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179


>gi|33860765|ref|NP_892326.1| transcription antitermination protein NusG [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633707|emb|CAE18664.1| transcription antitermination protein, NusG [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 203

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWY VQV S+CEKK   ++  R    G+++ + EI IP    + ++K   +  +E + FP
Sbjct: 20  RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111
           GYVL++ ++ +     +K TP VI F+G  +            P P++  E+  I  +  
Sbjct: 80  GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++ V  +  E  +R+ V+ GPF  F G V  V  E++++   + IFGR TPVEL ++
Sbjct: 140 E--KKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197

Query: 172 QVEK 175
           Q+ K
Sbjct: 198 QINK 201


>gi|256420746|ref|YP_003121399.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256035654|gb|ACU59198.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 196

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/177 (40%), Positives = 111/177 (62%), Gaps = 5/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++V S  EKK  E +   + RS   +++T+I +P E+V  V+ G+KV  E+ F+PG
Sbjct: 20  KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79

Query: 64  YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119
           YV+I+A+   MTD+V  +I++   VI FLG  + P  +  +E+  ++ +V+         
Sbjct: 80  YVMIEAIDGKMTDEVIQSIRNVSGVIHFLG-KDKPIALRKAEVNKMLGKVDEMSDNGLTM 138

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S  F VGE + + DGPF  FNGI++ V E+K ++ V V IFGR TPVEL + QVEKI
Sbjct: 139 SEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEKI 195


>gi|229830146|ref|ZP_04456215.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM
           14600]
 gi|229791444|gb|EEP27558.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM
           14600]
          Length = 165

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 9   QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
             YS  E K    I   ++   L   + E+ +P + VV V+ G +    ++ FPGYVLI 
Sbjct: 3   HTYSGYENKVKADIEKTVANRHLQDQILEVMVPMQDVVEVKNGVRKTVSKKIFPGYVLIN 62

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
             M D  ++ +++T    GF+G G +P P+T+ E+  +       +      V F VG+ 
Sbjct: 63  MYMNDDTWYVVRNTRGATGFVGPGSDPVPLTEREMSKM------GIHTENIEVDFGVGDT 116

Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V V  G +    G+V+ ++  K  + + V +FGR TPVE+++  V+K+
Sbjct: 117 VSVIGGAWKDTVGVVQAMNPNKQSLTINVELFGRETPVEISFTDVQKM 164


>gi|119485148|ref|ZP_01619533.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106]
 gi|119457376|gb|EAW38501.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106]
          Length = 210

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 21/195 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60
             RWY VQV S CEK+   ++  R+    +   + ++ IP    +   + G +  SE + 
Sbjct: 14  ELRWYAVQVASGCEKRVKVNLEQRIKTLDVGDRILKVQIPQTPTIKLRKDGSRQQSEEKV 73

Query: 61  FPGYVLIKA-----------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---- 105
           FPGYVL++             + D+ +  +K+TP VI F+G  +  S             
Sbjct: 74  FPGYVLVQMKLKWNGDFSHWDIDDEAWQVVKNTPHVINFVGAEQKRSSSRGRGHVKPLPL 133

Query: 106 -----IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                     +     PV  V    G+ + V  GPF  F G V  V  E++++   + IF
Sbjct: 134 SSAEVERIFRQTQQAEPVVQVAMVAGDHIVVLSGPFKDFEGDVIEVSPERNKLKALLSIF 193

Query: 161 GRVTPVELAYNQVEK 175
           GR TPVEL +NQVEK
Sbjct: 194 GRDTPVELEFNQVEK 208


>gi|313887246|ref|ZP_07820940.1| transcription termination/antitermination factor NusG
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923299|gb|EFR34114.1| transcription termination/antitermination factor NusG
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177000|gb|AEE12690.1| NusG antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
          Length = 180

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 6/179 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            R+Y+++V S  EKK  E I    S   L   V  + +P+E+VVS R G+KV  ER + P
Sbjct: 1   MRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP 117
           GYVL++A +     HT+   P VIGFL +  +     P P+   E++ ++ Q +   +  
Sbjct: 61  GYVLVEAALVGDTEHTLCTIPNVIGFLNSRMSDGQLSPEPLRTQEVQDLLGQADRDAEGA 120

Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               V + VGE V + DGPF+ F+  +  V  +K ++ V V IFGR TP+EL Y QVEK
Sbjct: 121 GRFDVEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179


>gi|189184706|ref|YP_001938491.1| transcription antitermination protein NusG [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181477|dbj|BAG41257.1| transcription antitermination protein NusG [Orientia tsutsugamushi
           str. Ikeda]
          Length = 178

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 1/176 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WYI++  S  E    ++I  + ++ G+ H   EI IP  +VV +++G+ +N  ++ 
Sbjct: 1   MAYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKT 59

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGY+LIK  M D+V   ++   K+  F G+      VT+ E++ +M Q+E   Q P   
Sbjct: 60  MPGYILIKMDMIDQVKDFMQKVVKLNRFPGSESKIVQVTEKEVQEMMVQLENKAQDPSFL 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +++GE V V+DGPF +F G ++ VD  K  + + + IF R T + + ++QVEK+
Sbjct: 120 EKYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 175


>gi|15639228|ref|NP_218676.1| transcription antitermination protein (nusG) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025469|ref|YP_001933241.1| transcription antitermination protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|6093601|sp|O83264|NUSG_TREPA RecName: Full=Transcription antitermination protein nusG
 gi|3322506|gb|AAC65224.1| transcription antitermination protein (nusG) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018044|gb|ACD70662.1| transcription antitermination protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059639|gb|ADD72374.1| transcription termination/antitermination factor NusG [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 185

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WYI+  +S  E +   ++   +  + +  +++ +I IP E +  V+ G+K    R+
Sbjct: 1   MAKEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKD----TPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113
           FFPGY+L++  + +  +  + +     P V GFLG+     P  V+  E   I+ +    
Sbjct: 61  FFPGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEI 120

Query: 114 --VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              + P  +  F VG++V + +GPFA+F+G V+ V  E+++V V V IFGR TPVEL   
Sbjct: 121 KGDRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELV 180

Query: 172 QVEKI 176
           QVE +
Sbjct: 181 QVEAL 185


>gi|326792626|ref|YP_004310447.1| NusG antitermination factor [Clostridium lentocellum DSM 5427]
 gi|326543390|gb|ADZ85249.1| NusG antitermination factor [Clostridium lentocellum DSM 5427]
          Length = 172

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M   RWY+V  +S  E K   +I   +    ++ L+  + +P ++ V  + G K   +R+
Sbjct: 1   MEKARWYVVHTFSGYENKVKANIEKAIKNRNMEELIHAVEVPLQQEVEEKNGVKKTVQRK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FPGYVL+K VMTD  ++ +++T  V GF+G    P  ++  E++++  ++     +   
Sbjct: 61  TFPGYVLVKMVMTDDTWYVVRNTRGVTGFVGPDSKPVSLSLEEVKNMGIELYGPAPKV-- 118

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               ++G+ V +  G F +  GIVK + + K  + V V  FGR  PVE++ NQVE
Sbjct: 119 ----KIGDAVTLLTGAFENSEGIVKEIHQSKGTIVVSVSGFGREFPVEISMNQVE 169


>gi|212696286|ref|ZP_03304414.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846531|ref|ZP_08169446.1| transcription termination/antitermination factor NusG [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|212676915|gb|EEB36522.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481289|gb|EGC84330.1| transcription termination/antitermination factor NusG [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 197

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY+V  Y+  E +  + I   +       ++ ++T+P E  V V+   K    R+ FP
Sbjct: 29  PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV++K  +T++ ++ I++T  V GF+G    P P+T  E+     +      +PV ++ 
Sbjct: 88  GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVRKFGIK----EDKPVLNID 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             VG+ V +  GPF      +K +D EK  +   + +FGR T ++L +  +E I
Sbjct: 144 INVGDNVNIIQGPFKDLVAEIKEIDPEKQIIKALIDMFGRDTIIDLGFEDIETI 197


>gi|306830215|ref|ZP_07463398.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis ATCC 6249]
 gi|304427582|gb|EFM30679.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis ATCC 6249]
          Length = 183

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+K   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMMISMFGNDTIAEVNLNQI 180


>gi|307243194|ref|ZP_07525367.1| transcription termination/antitermination factor NusG
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493455|gb|EFM65435.1| transcription termination/antitermination factor NusG
           [Peptostreptococcus stomatis DSM 17678]
          Length = 180

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFF 61
            +WY+V  YS  E K   +I   +   G+++++ ++ +P+E V  + + G++   +R+ F
Sbjct: 7   MQWYVVHTYSGHENKVKTTIENTVKNRGMENIIEQVIVPTEDVVTTTKTGKEKMVQRKVF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YV++K  MTD+ ++ +++T  V GF+G G  P P+T  E+   M     A +     +
Sbjct: 67  PSYVIVKMEMTDESWYVVRNTKGVTGFVGPGSKPVPLTVDEV-RAMGIELPASKIVSGEI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               G+ V V  G F    G V++V+ EK  V V V  FGR   V L    +EKI
Sbjct: 126 DLNPGDTVRVISGAFVDNVGEVEDVNIEKKEVKVYVNAFGRKALVTLGLENIEKI 180


>gi|257126639|ref|YP_003164753.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b]
 gi|257050578|gb|ACV39762.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b]
          Length = 207

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 16/191 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI+  YS  EKK    +  R+    L   V  I +P E V+  ++G++V   R+ F
Sbjct: 15  EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74

Query: 62  PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           P YV+I+               +    ++ I++T  V GF+G G +P P++D E  +++ 
Sbjct: 75  PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLA 134

Query: 109 QVEAAVQ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
           ++   V+    P   + F+VGE V V  G F    G +  +D E  +V V + + GR+TP
Sbjct: 135 KIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLTP 194

Query: 166 VELAYNQVEKI 176
           VE+ + ++ KI
Sbjct: 195 VEVEHTEIAKI 205


>gi|307702534|ref|ZP_07639487.1| transcription termination/antitermination factor NusG
           [Streptococcus oralis ATCC 35037]
 gi|331265605|ref|YP_004325235.1| transcription antitermination protein NusG [Streptococcus oralis
           Uo5]
 gi|307623880|gb|EFO02864.1| transcription termination/antitermination factor NusG
           [Streptococcus oralis ATCC 35037]
 gi|326682277|emb|CBY99894.1| transcription antitermination protein NusG [Streptococcus oralis
           Uo5]
          Length = 178

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+K   E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQI 175


>gi|220909378|ref|YP_002484689.1| transcription antitermination protein NusG [Cyanothece sp. PCC
           7425]
 gi|219865989|gb|ACL46328.1| NusG antitermination factor [Cyanothece sp. PCC 7425]
          Length = 217

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 25/196 (12%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61
             WY VQV S CEKK  +++  R     +   + +I IP    +   + G +  SE + F
Sbjct: 22  KHWYAVQVASGCEKKVKQNLEQRRQTLDVADRILQIEIPQTPTIKLRKDGSRQTSEEKVF 81

Query: 62  PGYVLI-----------KAVMTDKVYHTIKDTPKVIGFLGTGENPS-----------PVT 99
           PGYVL+           K  + D+ +  I++TP VI F+G  +               + 
Sbjct: 82  PGYVLLLIREAWDDKRGKWRIDDEAWQVIRNTPNVINFVGAEQRKHTGRGRGHVEPVRLH 141

Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
            SE+E I  Q +   Q PV  +    G+++ V +GPF  F G V  V  E+S++   + I
Sbjct: 142 PSEVERIFRQTKE--QEPVHKIDLAAGDKIRVLNGPFKDFEGEVIEVSGERSKLKALLSI 199

Query: 160 FGRVTPVELAYNQVEK 175
           FGR TPVEL  NQV+K
Sbjct: 200 FGRETPVELEVNQVQK 215


>gi|307705692|ref|ZP_07642538.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis SK597]
 gi|307707716|ref|ZP_07644195.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis NCTC 12261]
 gi|307710897|ref|ZP_07647323.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis SK321]
 gi|307616214|gb|EFN95408.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis NCTC 12261]
 gi|307617253|gb|EFN96427.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis SK321]
 gi|307620706|gb|EFN99796.1| transcription termination/antitermination factor NusG
           [Streptococcus mitis SK597]
          Length = 178

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175


>gi|260890608|ref|ZP_05901871.1| transcription termination/antitermination factor NusG [Leptotrichia
           hofstadii F0254]
 gi|260859653|gb|EEX74153.1| transcription termination/antitermination factor NusG [Leptotrichia
           hofstadii F0254]
          Length = 207

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 16/191 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI+  YS  EKK    +  R+    L   V  I +P E V+  ++G+ V   R+ F
Sbjct: 15  EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLF 74

Query: 62  PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           P YV+I+               +    ++ I++T  V GF+G G +P P++D E   ++ 
Sbjct: 75  PSYVMIEMRSVREENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASDLLA 134

Query: 109 QVEAAVQ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
           +V   V     P   + F+VGE V +  G F    G +  +D E  +V V + + GR+TP
Sbjct: 135 KVGMDVDGENAPRIGIDFKVGEVVAIRGGSFDGQQGEISEIDYEHGKVKVMLEVLGRLTP 194

Query: 166 VELAYNQVEKI 176
           VE+ + ++ KI
Sbjct: 195 VEVEHTEIAKI 205


>gi|270293432|ref|ZP_06199640.1| transcription antitermination protein NusG [Streptococcus sp. M143]
 gi|293364534|ref|ZP_06611257.1| transcription antitermination protein NusG [Streptococcus oralis
           ATCC 35037]
 gi|315611917|ref|ZP_07886835.1| transcription termination/antitermination factor NusG
           [Streptococcus sanguinis ATCC 49296]
 gi|322376154|ref|ZP_08050662.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. C300]
 gi|270278094|gb|EFA23943.1| transcription antitermination protein NusG [Streptococcus sp. M143]
 gi|291316946|gb|EFE57376.1| transcription antitermination protein NusG [Streptococcus oralis
           ATCC 35037]
 gi|315315906|gb|EFU63940.1| transcription termination/antitermination factor NusG
           [Streptococcus sanguinis ATCC 49296]
 gi|321278836|gb|EFX55881.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. C300]
          Length = 183

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+K   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQI 180


>gi|322379403|ref|ZP_08053773.1| transcription antitermination protein NusG [Helicobacter suis HS1]
 gi|322379973|ref|ZP_08054247.1| transcription antitermination protein NusG [Helicobacter suis HS5]
 gi|321147601|gb|EFX42227.1| transcription antitermination protein NusG [Helicobacter suis HS5]
 gi|321148112|gb|EFX42642.1| transcription antitermination protein NusG [Helicobacter suis HS1]
          Length = 175

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY +Q YS  E+   +++   +  +G+ + V ++ +P+E V+ + +KG+   +ER  +
Sbjct: 1   MEWYAIQTYSGSEQSVKKAVENMVRENGIANRVEKVIVPTEDVIELSKKGKNKVTERSLY 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV IK  +   ++H I+  PKV  F+G  + P+P++D++I +I+ ++      P   +
Sbjct: 61  PGYVFIKVDLDTVLWHKIQSLPKVSRFIGESKKPTPLSDADIGNILEKMANRA-APKPKI 119

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           ++E GE V + +GPFA+F   V+  D E  ++ + V IFGR T +++ Y+QVEKI+
Sbjct: 120 YYEKGEVVRIVEGPFANFTATVEEYDVEHRKLKLSVSIFGRNTLIDILYSQVEKII 175


>gi|261367232|ref|ZP_05980115.1| transcription termination/antitermination factor NusG
           [Subdoligranulum variabile DSM 15176]
 gi|282570832|gb|EFB76367.1| transcription termination/antitermination factor NusG
           [Subdoligranulum variabile DSM 15176]
          Length = 179

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK------VNSE 57
            WY+V  YS  E K  + +   +    L  L+ ++ +P+E V+     +          +
Sbjct: 6   NWYVVHTYSGYENKVAQDLMTMVENRRLQDLICDVKVPTETVIEEVLDKTGNKTGEKEVQ 65

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           R+ +PGYV +K VM D  ++ +++T    GF+G    P P+T++E+  +           
Sbjct: 66  RKLYPGYVFVKMVMNDNTWYIVRNTRGCTGFVGPESKPEPLTEAEVAKM-----GVETTA 120

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              V ++VG+ V ++ GP     G V+ +D    +V V++ +FGR  P EL  +QV+
Sbjct: 121 ELQVDYKVGDTVEITAGPMEGSVGTVEEIDIPARKVRVKITMFGRELPAELELHQVK 177


>gi|306826325|ref|ZP_07459658.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431438|gb|EFM34421.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 183

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+K   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQI 180


>gi|319946091|ref|ZP_08020339.1| transcription antitermination protein NusG [Streptococcus australis
           ATCC 700641]
 gi|319747737|gb|EFV99982.1| transcription antitermination protein NusG [Streptococcus australis
           ATCC 700641]
          Length = 178

 Score =  134 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQIEKNGKTKEIEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I N + +  Q     ++
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRNILISMGQTVQDFNI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVKVGDTVRIIDGAFADYTGKITEID--NNKVKMIITMFGNDTVAEVNLNQI 175


>gi|268608956|ref|ZP_06142683.1| transcription antitermination protein NusG [Ruminococcus
           flavefaciens FD-1]
          Length = 175

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 5/172 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K  + I   +    L  L+ E+ +P+E V  +  G+    ER+ +
Sbjct: 4   AAKWYVVHTYSGYENKVAKDIEKTVENRKLHELIQEVRVPTETVTEITDGKTKEVERKTY 63

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVLIK V+ D  ++ +++T    GF+G    P+P++++E++ +       V      V
Sbjct: 64  PGYVLIKMVVNDDTWYLVRNTRGCTGFVGPASEPTPLSEAEVKQLFG-----VDVSSVEV 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            F+VG+RV +S      F G+V+N++ E   V + V +FGR TP  L  +QV
Sbjct: 119 NFKVGDRVQISGTAMDGFIGVVQNINLEDRSVDLLVSMFGRETPTTLPISQV 170


>gi|160947356|ref|ZP_02094523.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270]
 gi|158446490|gb|EDP23485.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270]
          Length = 179

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY+V  YS  E K   +I   +   G D  + E+ +P+ +  +         ER+ F
Sbjct: 13  EAKWYVVHTYSGHENKVKANIEKLVVNRGNDIDIFEVVVPTVKEETETGK---IKERQLF 69

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYVL+K ++TD  ++ +++T  V GF+G+G  P P+++ E+E +         +P  +V
Sbjct: 70  PGYVLVKMIITDISWYLVRNTRGVTGFVGSGNKPVPLSEKEVEAL-----GVSAKPYDNV 124

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               G+ + + DG F      V  V +E  ++   V +FGR T  EL ++ V K
Sbjct: 125 DIHEGDSITIIDGAFKDLTAKVIEVSQENGKLKAFVSLFGRDTLAELDFSDVIK 178


>gi|326799806|ref|YP_004317625.1| NusG antitermination factor [Sphingobacterium sp. 21]
 gi|326550570|gb|ADZ78955.1| NusG antitermination factor [Sphingobacterium sp. 21]
          Length = 181

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 113/174 (64%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V+  S  EKK  + I   ++R G++HLV ++ IP E+   +R+G+K+  ER ++PG
Sbjct: 7   KWYVVRAVSGKEKKVKQYIEAEINRLGINHLVPQVLIPMEKYFQMREGKKIAKERNYYPG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           YVL++A +  ++ H IK+   VIGFLG    N  P+  +E+  I+  V+   ++  + +V
Sbjct: 67  YVLLEAALDGELEHVIKNINSVIGFLGDKAGNAIPLRQAEVNRILGTVDEMSEQGEMMNV 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + VGE V V+DGPF  F+G ++ V+EEK ++ V V +FGR TP+EL Y QVEK
Sbjct: 127 PYYVGESVKVTDGPFNGFSGEIEEVNEEKKKLKVMVKVFGRKTPLELNYMQVEK 180


>gi|284050920|ref|ZP_06381130.1| transcription antitermination protein NusG [Arthrospira platensis
           str. Paraca]
 gi|291565933|dbj|BAI88205.1| transcription antitermination protein NusG [Arthrospira platensis
           NIES-39]
          Length = 223

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 25/195 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62
           RWY VQV S CEK+   ++  R+    +   + ++ IP  + + +RK       + + FP
Sbjct: 29  RWYAVQVASGCEKRVKLNLDQRVQTLDVADRILKVEIPQTQAIKLRKDGSRQHGQEKVFP 88

Query: 63  GYVLIKA-----------VMTDKVYHTIKDTPKVIGFLGTGENPS-----------PVTD 100
           GYVLI+             + D+ +  +K+TP VI F+G  +              P++ 
Sbjct: 89  GYVLIQMKLNWNNELNQWDVDDEAWQVVKNTPHVINFVGAEQKRHSGRGRGHVKPLPLSP 148

Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
           SE++ I  Q +   Q  V  V    G+ + V  GPF  F G V  V  E++++   + IF
Sbjct: 149 SEVDRIFRQTQQ--QETVVKVEMASGDHILVLSGPFKDFEGDVIEVSPERNKLKALLSIF 206

Query: 161 GRVTPVELAYNQVEK 175
           GR TPVEL +NQVEK
Sbjct: 207 GRDTPVELEFNQVEK 221


>gi|322392790|ref|ZP_08066248.1| transcription antitermination protein NusG [Streptococcus peroris
           ATCC 700780]
 gi|321144368|gb|EFX39771.1| transcription antitermination protein NusG [Streptococcus peroris
           ATCC 700780]
          Length = 178

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 NVEVGQTVRIIDGAFTDYTGKITEID--NNKVKMTISMFGNDTVAEVNLNQI 175


>gi|322378273|ref|ZP_08052755.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. M334]
 gi|321280775|gb|EFX57793.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. M334]
          Length = 183

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDL 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180


>gi|315222231|ref|ZP_07864138.1| transcription termination/antitermination factor NusG
           [Streptococcus anginosus F0211]
 gi|319940425|ref|ZP_08014775.1| transcription antitermination protein nusG [Streptococcus anginosus
           1_2_62CV]
 gi|315188734|gb|EFU22442.1| transcription termination/antitermination factor NusG
           [Streptococcus anginosus F0211]
 gi|319810481|gb|EFW06823.1| transcription antitermination protein nusG [Streptococcus anginosus
           1_2_62CV]
          Length = 178

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVKVGDTVRIIDGAFADYTGKITEID--NNKVKMIISLFGNDTVAEVNLNQI 175


>gi|15901830|ref|NP_346434.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae TIGR4]
 gi|116515696|ref|YP_817227.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae D39]
 gi|168487640|ref|ZP_02712148.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC1087-00]
 gi|169834180|ref|YP_001695362.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172079577|ref|ZP_02709033.2| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC1873-00]
 gi|183603315|ref|ZP_02714099.2| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae SP195]
 gi|183603677|ref|ZP_02718816.2| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC3059-06]
 gi|194398075|ref|YP_002038590.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae G54]
 gi|221232730|ref|YP_002511884.1| transcription antitermination factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225855498|ref|YP_002737010.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae JJA]
 gi|225857582|ref|YP_002739093.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae P1031]
 gi|225859764|ref|YP_002741274.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae 70585]
 gi|225861827|ref|YP_002743336.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229090|ref|ZP_06962771.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|307068619|ref|YP_003877585.1| transcription antiterminator [Streptococcus pneumoniae AP200]
 gi|307128208|ref|YP_003880239.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae 670-6B]
 gi|14973517|gb|AAK76074.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae TIGR4]
 gi|116076272|gb|ABJ53992.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae D39]
 gi|168996682|gb|ACA37294.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042609|gb|EDT50655.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC1873-00]
 gi|183569582|gb|EDT90110.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC1087-00]
 gi|183571666|gb|EDT92194.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae SP195]
 gi|183575431|gb|EDT95959.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC3059-06]
 gi|194357742|gb|ACF56190.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae G54]
 gi|220675192|emb|CAR69778.1| transcription antitermination factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225720344|gb|ACO16198.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae 70585]
 gi|225723234|gb|ACO19087.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae JJA]
 gi|225724365|gb|ACO20217.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae P1031]
 gi|225727169|gb|ACO23020.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794946|emb|CBW37409.1| transcription antitermination factor [Streptococcus pneumoniae
           INV104]
 gi|301800768|emb|CBW33418.1| transcription antitermination factor [Streptococcus pneumoniae
           OXC141]
 gi|301802685|emb|CBW35452.1| transcription antitermination factor [Streptococcus pneumoniae
           INV200]
 gi|306410156|gb|ADM85583.1| Transcription antiterminator [Streptococcus pneumoniae AP200]
 gi|306485270|gb|ADM92139.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae 670-6B]
 gi|327389002|gb|EGE87349.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae GA04375]
 gi|332071720|gb|EGI82212.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae GA17545]
 gi|332071800|gb|EGI82290.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae GA17570]
 gi|332071866|gb|EGI82355.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae GA41301]
          Length = 178

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q       
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E+G+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175


>gi|22297838|ref|NP_681085.1| transcription antitermination protein NusG [Thermosynechococcus
           elongatus BP-1]
 gi|22294015|dbj|BAC07847.1| transcription antitermination protein [Thermosynechococcus
           elongatus BP-1]
          Length = 227

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 25/195 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63
           WY VQV S CEKK   +I  RL    +   +  I IP   V+ ++K   +   E + FPG
Sbjct: 34  WYAVQVASGCEKKVKSTIEQRLHTLDVADRIFRIEIPQTPVIKIKKDGSRQTIEEKVFPG 93

Query: 64  YVLIK-----------AVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDS 101
           YVL++             + D+ +  IK+TP VI F+G  +            P P++ +
Sbjct: 94  YVLVQVRAQQSPETGEWQIDDEAWQVIKNTPNVINFVGAEQRRSTGRGRGHVKPMPLSPA 153

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           E+E I  + +   Q PV  +    G+++ V +GPF  F G V  V  E+S++   + IFG
Sbjct: 154 EVERIFRKAQE--QEPVHRIDLNSGDKIKVLNGPFKDFEGEVIEVSAERSKLKALLSIFG 211

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL   QVEK+
Sbjct: 212 RETPVELEVTQVEKV 226


>gi|328949288|ref|YP_004366625.1| NusG antitermination factor [Treponema succinifaciens DSM 2489]
 gi|328449612|gb|AEB15328.1| NusG antitermination factor [Treponema succinifaciens DSM 2489]
          Length = 185

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WYI+Q YS  E+K   ++   L+   LD ++V ++ +P E VV +  G+K      
Sbjct: 1   MARSWYILQTYSGYEQKIQRTLATMLTEQKLDSNIVFQVKVPMEEVVEISNGKKHVRNNL 60

Query: 60  FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA- 112
             PGY++I+  +    +      I+    V GF+G    E P P++  E ++I+      
Sbjct: 61  ILPGYIMIEMDLPQIGWKNTCSLIRRVQGVTGFVGVKPSEKPRPISTDEAKNILQMAGEL 120

Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              ++      FEVGE V +++GPFA+F+G +++++ EK+++ V V IFGR TPVE+   
Sbjct: 121 KGEKQVRIKQNFEVGETVKITEGPFATFSGAIEDINTEKNKLRVNVQIFGRATPVEVDVL 180

Query: 172 QVEKI 176
           QVEKI
Sbjct: 181 QVEKI 185


>gi|182684943|ref|YP_001836690.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae CGSP14]
 gi|182630277|gb|ACB91225.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae CGSP14]
          Length = 183

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   +   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVQENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E+G+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180


>gi|39938741|ref|NP_950507.1| transcription antiterminator [Onion yellows phytoplasma OY-M]
 gi|39721850|dbj|BAD04340.1| transcription antiterminator [Onion yellows phytoplasma OY-M]
          Length = 204

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI Q YS  E    + +  R+   G+  LV+ +  P E     R  G+KV  ER+ +P
Sbjct: 30  KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+ ++TD+ +  +++TP++ GFLG+    S         I   +            
Sbjct: 90  GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 149

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +G++V +  G F+   G V ++D+++ ++ VEV +FGR TPVE+++N  ++I
Sbjct: 150 NFIGKKVEIISGSFSGQIGQVSSIDDDREKMTVEVDLFGRATPVEISFNDFKEI 203


>gi|157150102|ref|YP_001451256.1| transcription antitermination protein NusG [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|262283603|ref|ZP_06061368.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. 2_1_36FAA]
 gi|157074896|gb|ABV09579.1| transcription termination/antitermination factor NusG
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|262260660|gb|EEY79361.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. 2_1_36FAA]
          Length = 178

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I N + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEFDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 HVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLNQI 175


>gi|322386605|ref|ZP_08060230.1| transcription antitermination protein NusG [Streptococcus cristatus
           ATCC 51100]
 gi|321269278|gb|EFX52213.1| transcription antitermination protein NusG [Streptococcus cristatus
           ATCC 51100]
          Length = 178

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKSKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVQEFDL 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG FA++ G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 126 DVKVGDTVRIIDGAFANYTGKITEID--NNKVKMIISMFGNDTVAEVNLSQI 175


>gi|257462552|ref|ZP_05626963.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
 gi|317060205|ref|ZP_07924690.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
 gi|313685881|gb|EFS22716.1| transcription antitermination protein nusG [Fusobacterium sp. D12]
          Length = 194

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 102/188 (54%), Gaps = 14/188 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW+++  YS  EKK    +  ++   G+  +V++I +P E+   + +G++    R+ FP
Sbjct: 7   KRWFMIHTYSGYEKKVKTDLEQKIETLGMKEIVSKILVPEEKSTEIVRGKEKVVFRKIFP 66

Query: 63  GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
           GYV+++               +    ++ +++T  V GF+G G +P P+ + E+E+I   
Sbjct: 67  GYVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRV 126

Query: 110 V-EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           +      R      F++G+ V V DG F +  G V  +D E+ +V + + IFGR+TPVE+
Sbjct: 127 IGYEQEVREFHKADFQIGDYVKVLDGAFVNKEGKVAEMDYEQGKVKIMIDIFGRMTPVEV 186

Query: 169 AYNQVEKI 176
           +++ VEK+
Sbjct: 187 SFSSVEKM 194


>gi|283769310|ref|ZP_06342210.1| transcription termination/antitermination factor NusG [Bulleidia
           extructa W1219]
 gi|283104086|gb|EFC05469.1| transcription termination/antitermination factor NusG [Bulleidia
           extructa W1219]
          Length = 196

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 6/177 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           RWY+V  Y+  E +  +++  RL   G+   +  I +  E  + ++   +    +   FP
Sbjct: 19  RWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVKKVNMFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY+ ++  MTD+ ++ +++TP V GF+G    G  P PV++ E+E I+ ++    Q+ V 
Sbjct: 79  GYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHGDQKVV- 137

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V F+VG+ V +  GPFA+  G +  ++++     V  ++FGR TP E++Y  ++K+
Sbjct: 138 -VDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQKL 193


>gi|162447021|ref|YP_001620153.1| transcription antitermination protein [Acholeplasma laidlawii
           PG-8A]
 gi|161985128|gb|ABX80777.1| transcription antitermination protein [Acholeplasma laidlawii
           PG-8A]
          Length = 182

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62
           RWY++Q YS  EK   E +  R+   G+   + +I +P E  +   + G+     R+ +P
Sbjct: 9   RWYVIQTYSGYEKAVKEDLARRVDSMGMQDYIYQIIVPEETYIEKNKDGKDKEKVRQIYP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++ ++TD  +  +++TP+V GFLG+    +       E I   +  A      +  
Sbjct: 69  GYVFVEMLVTDDSWFVVRNTPRVTGFLGSSGGGTKPVPLLEEEIRPILLKANVISKPNYE 128

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +G+ V +  G F    G V  VD ++ ++ V++ +FGR TP E+ + Q ++I
Sbjct: 129 YLLGKEVQIISGAFEGQIGRVSYVDADQEKMMVDIDVFGRATPTEIDFTQFKEI 182


>gi|148989702|ref|ZP_01821011.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924818|gb|EDK75901.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP6-BS73]
          Length = 183

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E+G+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180


>gi|110004182|emb|CAK98520.1| putative transcription antitermination nusg transmembrane protein
           [Spiroplasma citri]
          Length = 217

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  YS  E +  + +  R+    +  +V +I +  E V + + G+ +  E+  +PG
Sbjct: 32  KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQV---------E 111
           Y+ I  +M D+ ++ +++T  V GF+G+      P P+TD E   ++++          +
Sbjct: 92  YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               + V    FEV + V +  G F    G V  +D  K    V + +FGR+TP E+ ++
Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211

Query: 172 QVEKI 176
           Q EKI
Sbjct: 212 QCEKI 216


>gi|253581636|ref|ZP_04858860.1| transcription antitermination protein nusG [Fusobacterium varium
           ATCC 27725]
 gi|251835985|gb|EES64522.1| transcription antitermination protein nusG [Fusobacterium varium
           ATCC 27725]
          Length = 199

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 19/192 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+++  YS  EKK    +  ++   G+  +VT++ +P E  +   +G+K    R+ FP
Sbjct: 7   KKWFMIHTYSGYEKKVKTDLEQKIETLGIGEIVTKVLVPEEETIEEVRGKKKTVARKIFP 66

Query: 63  GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
           GYV+++               +    ++ +++T  V GF+G G +P P+ D E+ +I   
Sbjct: 67  GYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVANIFRV 126

Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
           +      E    + V  + F +G+ V +  G FA   G V  +D E+ +V V + +FGR+
Sbjct: 127 IGYDIPEEEKENKEVLKINFGLGDFVKILGGGFAGHEGKVAEIDMEQRKVKVMIEMFGRM 186

Query: 164 TPVELAYNQVEK 175
           TPVE+ +N VEK
Sbjct: 187 TPVEVDFNSVEK 198


>gi|15903862|ref|NP_359412.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae R6]
 gi|111657098|ref|ZP_01407887.1| hypothetical protein SpneT_02001671 [Streptococcus pneumoniae
           TIGR4]
 gi|148985943|ref|ZP_01818996.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP3-BS71]
 gi|148992157|ref|ZP_01821931.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP9-BS68]
 gi|148998770|ref|ZP_01826207.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP11-BS70]
 gi|149007846|ref|ZP_01831442.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP18-BS74]
 gi|149011858|ref|ZP_01833006.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP19-BS75]
 gi|149020768|ref|ZP_01835297.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP23-BS72]
 gi|168492586|ref|ZP_02716729.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC0288-04]
 gi|237650119|ref|ZP_04524371.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae CCRI 1974]
 gi|298254841|ref|ZP_06978427.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298501505|ref|YP_003723445.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303260785|ref|ZP_07346741.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP-BS293]
 gi|303263114|ref|ZP_07349043.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265162|ref|ZP_07351074.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS397]
 gi|303267720|ref|ZP_07353538.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS457]
 gi|303270091|ref|ZP_07355800.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS458]
 gi|15459507|gb|AAL00623.1| Transcription antitermination factor [Streptococcus pneumoniae R6]
 gi|147755331|gb|EDK62381.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760696|gb|EDK67669.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763813|gb|EDK70746.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP19-BS75]
 gi|147921916|gb|EDK73041.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP3-BS71]
 gi|147929206|gb|EDK80217.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP9-BS68]
 gi|147930409|gb|EDK81392.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP23-BS72]
 gi|183573260|gb|EDT93788.1| transcription termination/antitermination factor NusG
           [Streptococcus pneumoniae CDC0288-04]
 gi|298237100|gb|ADI68231.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae TCH8431/19A]
 gi|302635736|gb|EFL66242.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638067|gb|EFL68546.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP-BS293]
 gi|302640373|gb|EFL70811.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS458]
 gi|302642750|gb|EFL73079.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS457]
 gi|302645243|gb|EFL75478.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS397]
          Length = 183

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E+G+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180


>gi|322388919|ref|ZP_08062511.1| transcription antitermination protein NusG [Streptococcus infantis
           ATCC 700779]
 gi|321140302|gb|EFX35815.1| transcription antitermination protein NusG [Streptococcus infantis
           ATCC 700779]
          Length = 178

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+K   E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + +G FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 NVEVGQTVRIIEGAFADYTGKITEID--NNKVKMVISMFGNDTVAEVNLNQI 175


>gi|167950492|ref|ZP_02537566.1| NusG antitermination factor [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 148

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 2/147 (1%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
           ++    E+ +P+E VV +R G++  SER+FFPGYVL++  MTD+ +H +KD PKV+GF+G
Sbjct: 1   MEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEMTDETWHLVKDVPKVLGFIG 60

Query: 91  TGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
                   P+TD E + I+ +V+  V++P   V FE GE V V DGPF  F+G+V+ VD 
Sbjct: 61  GYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVVRVVDGPFNDFSGVVEEVDY 120

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
           EKSR+ V V+IFGR TPV+L + QVEK
Sbjct: 121 EKSRLKVSVLIFGRSTPVDLEFGQVEK 147


>gi|289167124|ref|YP_003445391.1| transcription antitermination factor [Streptococcus mitis B6]
 gi|288906689|emb|CBJ21523.1| transcription antitermination factor [Streptococcus mitis B6]
          Length = 178

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYDMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q       
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175


>gi|237821865|ref|ZP_04597710.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303255490|ref|ZP_07341550.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS455]
 gi|302597550|gb|EFL64636.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae BS455]
          Length = 182

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G++   E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E+G+ V + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180


>gi|256545060|ref|ZP_05472427.1| transcription antitermination protein NusG [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399263|gb|EEU12873.1| transcription antitermination protein NusG [Anaerococcus vaginalis
           ATCC 51170]
          Length = 197

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 5/174 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY+V  Y+  E +  + I   +       ++ ++T+P E  V V+   K    R+ FP
Sbjct: 29  PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV++K  +T++ ++ I++T  V GF+G    P P+T  E+     +      +PV ++ 
Sbjct: 88  GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVRKFGIK----EDKPVLNIN 143

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             VG+ + +  GPF      VK VD +K  +   + +FGR T ++L++  +E I
Sbjct: 144 INVGDNINIIQGPFKDLVAEVKEVDTDKQIIKALIDMFGRDTIIDLSFEDIETI 197


>gi|282889737|ref|ZP_06298276.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500311|gb|EFB42591.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 182

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 104/175 (59%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+VQ  S+ EKKA +++       G+  L+  + +P E+V  V+ G +   E+R +P
Sbjct: 2   HKWYVVQAISSQEKKAKKNLEEHREHKGMSELIERVVLPIEKVSEVKNGLQKVVEKRLWP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+LIK  +TD+ +  +K+T  V+ FLG G+ P+ +T+ E++ I+  +E   Q       
Sbjct: 62  GYLLIKMTLTDESWSYVKNTIGVVDFLG-GDQPAALTEKEVDEILKDLEDKKQTVTQRHK 120

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           F VG+RV + DG F +F G V  V  +K R+ V V IFGR T V +L + QVE+I
Sbjct: 121 FNVGDRVKIVDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 175


>gi|40786356|dbj|BAD07006.1| transcription anti-termination factor [Onion yellows phytoplasma]
          Length = 204

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI Q YS  E    + +  R+   G+  LV+ +  P E     R  G+KV  ER+ +P
Sbjct: 30  KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+ ++TD+ +  +K+TP++ GFLG+    S         I   +            
Sbjct: 90  GYVFIQMMITDRSWFVVKNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 149

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +G++V +  G F+   G V ++D+++ ++ VEV +FGR TPVE+++N  ++I
Sbjct: 150 NFIGKKVEIISGSFSGQIGQVSSIDDDREKMKVEVDLFGRATPVEISFNDFKEI 203


>gi|125718987|ref|YP_001036120.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK36]
 gi|323350655|ref|ZP_08086316.1| transcription antitermination protein NusG [Streptococcus sanguinis
           VMC66]
 gi|125498904|gb|ABN45570.1| Transcription antitermination factor NusG, putative [Streptococcus
           sanguinis SK36]
 gi|322123075|gb|EFX94766.1| transcription antitermination protein NusG [Streptococcus sanguinis
           VMC66]
 gi|324989882|gb|EGC21825.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK353]
 gi|324992605|gb|EGC24526.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK405]
 gi|324995865|gb|EGC27776.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK678]
 gi|325686704|gb|EGD28730.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK72]
 gi|325688846|gb|EGD30854.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK115]
 gi|325695370|gb|EGD37270.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK150]
 gi|325697311|gb|EGD39197.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK160]
 gi|327460008|gb|EGF06347.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK1]
 gi|327463500|gb|EGF09819.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK1057]
 gi|327467893|gb|EGF13383.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK330]
 gi|327472154|gb|EGF17591.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK408]
 gi|327488598|gb|EGF20398.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK1058]
 gi|328944700|gb|EGG38861.1| transcription antitermination protein NusG [Streptococcus sanguinis
           SK1087]
          Length = 178

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I N + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEFDL 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 126 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMIISMFGNDTVAEVNLSQI 175


>gi|322390410|ref|ZP_08063931.1| transcription antitermination protein NusG [Streptococcus
           parasanguinis ATCC 903]
 gi|321142868|gb|EFX38325.1| transcription antitermination protein NusG [Streptococcus
           parasanguinis ATCC 903]
          Length = 178

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEFDL 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175


>gi|296875634|ref|ZP_06899704.1| transcription termination/antitermination factor NusG
           [Streptococcus parasanguinis ATCC 15912]
 gi|312866822|ref|ZP_07727035.1| transcription termination/antitermination factor NusG
           [Streptococcus parasanguinis F0405]
 gi|296433364|gb|EFH19141.1| transcription termination/antitermination factor NusG
           [Streptococcus parasanguinis ATCC 15912]
 gi|311097605|gb|EFQ55836.1| transcription termination/antitermination factor NusG
           [Streptococcus parasanguinis F0405]
          Length = 178

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q      +
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEFDL 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 126 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTVAEVNLNQI 175


>gi|194476830|ref|YP_002049009.1| transcription antitermination protein NusG [Paulinella
           chromatophora]
 gi|171191837|gb|ACB42799.1| transcription antitermination protein NusG [Paulinella
           chromatophora]
          Length = 228

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 14/183 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63
           WY VQV S+CEKK   ++  R    G+ + + EI IP    + ++K   + + E + FPG
Sbjct: 46  WYAVQVASSCEKKVKTTLEKRAMTLGVSNRILEIAIPEIPTLKIKKDGSRQSIEEKVFPG 105

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVEA 112
           YVLI+ ++ +     I+ TP VI F+G               P P++  E++ I  +   
Sbjct: 106 YVLIRMILDEDTMMAIRSTPHVINFVGNEAKRVNRRIRGHIDPKPLSRQEVDRIFKRATQ 165

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             ++ +     + G+R+ V  GPF  F G V  V  E+S++   + IFGR TPVEL + Q
Sbjct: 166 --KKNLVKSDLDEGDRIVVIAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFAQ 223

Query: 173 VEK 175
           + K
Sbjct: 224 ISK 226


>gi|297571949|ref|YP_003697723.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932296|gb|ADH93104.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
          Length = 288

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  Y+  EK+    +  R+    ++  + +I +P E V  V+KG +    R   PG
Sbjct: 101 RWYVLHTYAGYEKRVKHDLETRMHSLDMEDYIFQIEVPMEEVFEVKKGSRKLVSRVRIPG 160

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR------- 116
           Y LI+  MTD  +  ++DT  V GF+G G  P  +T  E+  ++  +             
Sbjct: 161 YALIRMKMTDDSWRVVQDTNGVTGFVGNGRTPVALTPDEVVQMLTPIVEKEAAVAVETAG 220

Query: 117 -------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                      V + VGE V ++  P+      +  VD    R+ V + + G+ TPV+L+
Sbjct: 221 KKVGNVGVTLEVEYSVGEIVTLTTEPWMGMPATISQVDAVNQRLTVLMTLVGQETPVDLS 280

Query: 170 YNQVEKI 176
           + QV+K+
Sbjct: 281 FGQVKKM 287


>gi|262067338|ref|ZP_06026950.1| transcription termination/antitermination factor NusG
           [Fusobacterium periodonticum ATCC 33693]
 gi|291378901|gb|EFE86419.1| transcription termination/antitermination factor NusG
           [Fusobacterium periodonticum ATCC 33693]
          Length = 193

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++    L  +VT I +P E    + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +   V++ I++T  V GF+G G +P P+ D E+++I N +
Sbjct: 68  YVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|257470018|ref|ZP_05634110.1| transcription antitermination protein nusG [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064243|ref|ZP_07928728.1| transcription antitermination protein nusG [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689919|gb|EFS26754.1| transcription antitermination protein nusG [Fusobacterium ulcerans
           ATCC 49185]
          Length = 199

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 19/192 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+++  YS  EKK    +  ++   G+  +VT++ +P E  +   +G+K    R+ FP
Sbjct: 7   KKWFMIHTYSGYEKKVKTDLEQKIETLGIGDIVTKVLVPEEETIEEVRGKKKTVARKIFP 66

Query: 63  GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
           GYV+++               +    ++ +++T  V GF+G G +P P+ D E+ +I   
Sbjct: 67  GYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVLNIFRV 126

Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
           +      E    + V  + F +GE V +  G FA   G V  +D E+ +V V + +FGR+
Sbjct: 127 IGYDIPEEEKENKEVVKINFGLGEFVKILGGGFAGHEGKVAEIDMEQKKVKVMIEMFGRM 186

Query: 164 TPVELAYNQVEK 175
           TPVE+ +N VEK
Sbjct: 187 TPVEVDFNSVEK 198


>gi|289422487|ref|ZP_06424330.1| transcription termination/antitermination factor NusG
           [Peptostreptococcus anaerobius 653-L]
 gi|289157059|gb|EFD05681.1| transcription termination/antitermination factor NusG
           [Peptostreptococcus anaerobius 653-L]
          Length = 180

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           +WY+V  YS  E K   +I   +   G++ ++ ++ +P+E VV+  K  ++  ++R+ FP
Sbjct: 8   KWYVVHTYSGHENKVKTTIENTVKNRGMEDIIEQVIVPTEEVVTTTKTGKEKLTQRKVFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV++K  MTD+ ++ +++T  V GF+G G  P P+T  E+   M     A +     + 
Sbjct: 68  SYVIVKMEMTDESWYIVRNTKGVTGFVGPGSKPVPLTVDEV-KAMGIELPASKIISGEID 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              G+ V V  G F    G V +V+ EK  V V V  FGR   V L    +EK+
Sbjct: 127 LAPGDTVKVISGAFVDNVGEVDDVNIEKREVKVYVNAFGRKALVTLGLENIEKV 180


>gi|257452912|ref|ZP_05618211.1| transcription antitermination protein nusG [Fusobacterium sp.
           3_1_5R]
 gi|257466707|ref|ZP_05631018.1| transcription antitermination protein nusG [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917859|ref|ZP_07914099.1| transcription antitermination protein nusG [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059454|ref|ZP_07923939.1| transcription antitermination protein nusG [Fusobacterium sp.
           3_1_5R]
 gi|313685130|gb|EFS21965.1| transcription antitermination protein nusG [Fusobacterium sp.
           3_1_5R]
 gi|313691734|gb|EFS28569.1| transcription antitermination protein nusG [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 196

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 16/190 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW+++  YS  EKK    +  ++   G+  +V++I +P E+   + +G++    R+ FP
Sbjct: 7   KRWFMIHTYSGYEKKVKTDLEQKIETLGMTEIVSKILVPEEKSTEIVRGKEKVVFRKIFP 66

Query: 63  GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
           GYV+++               +    ++ +++T  V GF+G G +P P+ + E+E+I   
Sbjct: 67  GYVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRV 126

Query: 110 V---EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           +   E   ++ +    FEVG+ V V DG F +  G V  +D E+ +V + + IFGR+TPV
Sbjct: 127 IGYKEEVREQQLYKADFEVGDYVKVLDGGFVNKEGRVAEMDYEQGKVKIMIDIFGRMTPV 186

Query: 167 ELAYNQVEKI 176
           E++++ VEK+
Sbjct: 187 EVSFSSVEKM 196


>gi|291166888|gb|EFE28934.1| transcription termination/antitermination factor NusG [Filifactor
           alocis ATCC 35896]
          Length = 181

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 93/173 (53%), Gaps = 4/173 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+V  YS  E K   +I   +    ++ ++  +++P E +V  + G+K    R+ FPG
Sbjct: 8   KWYVVHTYSGHENKVKATIEKAVQNRNMEDIIPRVSVPVEEIVEEKNGKKHTRYRKIFPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y L+K ++TD+ ++ +++T  V GF+G    P P+T+ E   ++N         +  + F
Sbjct: 68  YCLVKMIVTDESWYVVRNTKGVTGFVGPNSKPIPLTEQE---VINMGLEEEVPVIYKIDF 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG-RVTPVELAYNQVEK 175
             G+RV +  G F+     V ++  EK    ++V +FG R T V++  +Q+EK
Sbjct: 125 AEGDRVIIKGGAFSGLRATVVSLHPEKGMAKIKVYMFGDRETLVDIEVSQLEK 177


>gi|322373828|ref|ZP_08048363.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. C150]
 gi|321277200|gb|EFX54270.1| transcription termination/antitermination factor NusG
           [Streptococcus sp. C150]
          Length = 179

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q       
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F    G V  +D   ++V + + +FG  T  EL   Q+
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEID--NNKVKIMINMFGSETAAELELYQI 176


>gi|241895135|ref|ZP_04782431.1| transcriptional antiterminator NusG [Weissella paramesenteroides
           ATCC 33313]
 gi|241871631|gb|EER75382.1| transcriptional antiterminator NusG [Weissella paramesenteroides
           ATCC 33313]
          Length = 184

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 4/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  Y+  E +   ++  R+   G+   +  + +P + V   + G     +   FP
Sbjct: 8   KQWYVLHTYAGYENRVKSNLESRIETMGMTDYIFRVLVPEQEVEVEKDGETKIVKENDFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GY L++ +MTD+ ++ +++TP V GFL   G G  P P+   E++ ++ ++    ++   
Sbjct: 68  GYALVEMIMTDEAWYVVRNTPGVTGFLGSHGGGSKPVPLLPEEVDDMLARMNLVERKVEH 127

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                      VS   FA   G +  +D+E   V + + +FGR TP ++++N ++ +
Sbjct: 128 LDVVVGDSVDVVSG-SFAGQEGEITAIDDEHQEVTILINMFGRDTPTQISFNDIKPV 183


>gi|225867754|ref|YP_002743702.1| transcription antitermination factor [Streptococcus equi subsp.
           zooepidemicus]
 gi|225869698|ref|YP_002745645.1| transcription antitermination factor [Streptococcus equi subsp.
           equi 4047]
 gi|225699102|emb|CAW92268.1| transcription antitermination factor [Streptococcus equi subsp.
           equi 4047]
 gi|225701030|emb|CAW97809.1| transcription antitermination factor [Streptococcus equi subsp.
           zooepidemicus]
          Length = 186

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 12  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFP 71

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD  +  +++TP V GF+G+  N S  T    E I   + +  Q       
Sbjct: 72  GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVDVFDT 131

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 132 NIKEGDMVQIIDGAFIGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQI 181


>gi|329121897|ref|ZP_08250511.1| transcription antitermination factor NusG [Dialister micraerophilus
           DSM 19965]
 gi|327467694|gb|EGF13190.1| transcription antitermination factor NusG [Dialister micraerophilus
           DSM 19965]
          Length = 207

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  E++  ++   G+D  + +I +P      V+ G K    R+ FPG
Sbjct: 37  RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LI+  + D  ++ +++TP V GF+GT   P P++D E E I   +    ++   +   
Sbjct: 97  YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERI---IAGDNKKVSVTTEA 153

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +VG+++ ++ GPFA  + +V  V ++K  V  ++  FG  T +EL 
Sbjct: 154 KVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIELE 199


>gi|218960795|ref|YP_001740570.1| transcription antitermination protein NusG [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729452|emb|CAO80363.1| transcription antitermination protein NusG [Candidatus Cloacamonas
           acidaminovorans]
          Length = 177

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 1/175 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K   +I   L+ + L+  V  + +P  +   +R+G+K+  +++ F 
Sbjct: 1   MKWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFT 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV+++A MT ++   I     V  FLG  +          E +   +          V+
Sbjct: 61  SYVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVY 120

Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +  G+ V V  GPF  F GIV+   E  +++ +EV +FGR TPVEL  +QVE I
Sbjct: 121 SYMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVELI 175


>gi|312865546|ref|ZP_07725773.1| transcription termination/antitermination factor NusG
           [Streptococcus downei F0415]
 gi|311099064|gb|EFQ57281.1| transcription termination/antitermination factor NusG
           [Streptococcus downei F0415]
          Length = 180

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 3/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMTENILRVEIPTQTVNVEKNGKTKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           GYVL++ VMTD  +  +++TP V GF+G+  N S  T    E I   + +  Q   V   
Sbjct: 67  GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVEVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +VG+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+ +I
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVIEI--ENNKVKIMINMFGSETAAEVELYQIAEI 179


>gi|313892111|ref|ZP_07825706.1| transcription termination/antitermination factor NusG [Dialister
           microaerophilus UPII 345-E]
 gi|313119466|gb|EFR42663.1| transcription termination/antitermination factor NusG [Dialister
           microaerophilus UPII 345-E]
          Length = 207

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  E++  ++   G+D  + +I +P      V+ G K    R+ FPG
Sbjct: 37  RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LI+  + D  ++ +++TP V GF+GT   P P++D E E I   +    ++   +   
Sbjct: 97  YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERI---IAGDNKKVSVTTEA 153

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +VG+++ ++ GPFA  + +V  V ++K  V  ++  FG  T +EL 
Sbjct: 154 KVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIELE 199


>gi|163752685|ref|ZP_02159848.1| transcription antitermination protein NusG [Shewanella benthica
           KT99]
 gi|161327425|gb|EDP98648.1| transcription antitermination protein NusG [Shewanella benthica
           KT99]
          Length = 161

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 100/153 (65%), Gaps = 1/153 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E + ++++   +    ++H   EI +P+E VV +R G++  SER+FFP
Sbjct: 9   KRWYVVQAFSGYEGRVLKTLNEYIQMYKMEHFFGEILVPTEEVVEMRAGQRRKSERKFFP 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYVL++  M D+ +H +K  P+V+GF+G   + P+P++D E + I+ +++   + P   V
Sbjct: 69  GYVLVQMEMNDESWHLVKSVPRVMGFIGGTSDRPAPISDVEADRILQRLQETTESPTHRV 128

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
            FE GE V V+DGPFA FNG V+ VD EK+RV 
Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVK 161


>gi|262038204|ref|ZP_06011598.1| transcription termination/antitermination factor NusG [Leptotrichia
           goodfellowii F0264]
 gi|261747785|gb|EEY35230.1| transcription termination/antitermination factor NusG [Leptotrichia
           goodfellowii F0264]
          Length = 205

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 15/189 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI+  YS  EKK    +  R+    L   V  I +P E V+  ++G+ V   R+ F
Sbjct: 16  EKKWYIIHTYSGYEKKVATDLEKRIESLNLTDRVFRILVPEEEVLEEKRGKMVKVPRKLF 75

Query: 62  PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           P YV+++               +  + ++ I++T  V GF+G G +P P++D E  ++++
Sbjct: 76  PSYVMVEMLSVKEENDLGLGYRVDSEAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLS 135

Query: 109 Q--VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           +  +         ++  E+GE+V V    F    G V  +D E  RV V + +FGR+TPV
Sbjct: 136 KIGINGFENENKFNIDVEIGEKVIVKKDSFLDQEGEVAEIDYEHGRVKVLLEVFGRLTPV 195

Query: 167 ELAYNQVEK 175
           E  YN+++K
Sbjct: 196 EFEYNEIQK 204


>gi|258646899|ref|ZP_05734368.1| transcription termination/antitermination factor NusG [Dialister
           invisus DSM 15470]
 gi|260404338|gb|EEW97885.1| transcription termination/antitermination factor NusG [Dialister
           invisus DSM 15470]
          Length = 206

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++  YS  E K  +++  ++   G+D  + +I +P      V+ G K    R+ FPG
Sbjct: 35  RWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPG 94

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LI+  + D+ ++ +++TP V GF+GT   P P++D E + I   +E   ++  +    
Sbjct: 95  YLLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRI---IEGKDKKQTAKTDA 151

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +VG+ + ++ GPFA  + +V +V +++S++  ++  FG  T +EL 
Sbjct: 152 KVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELE 197


>gi|288904354|ref|YP_003429575.1| transcription antitermination factor [Streptococcus gallolyticus
           UCN34]
 gi|288731079|emb|CBI12625.1| transcription antitermination factor [Streptococcus gallolyticus
           UCN34]
          Length = 179

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG FA   G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 127 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 176


>gi|148284111|ref|YP_001248201.1| transcription antitermination protein [Orientia tsutsugamushi str.
           Boryong]
 gi|146739550|emb|CAM79279.1| transcription antitermination protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 184

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WYI++  S  E    ++I  + ++ G+ H   EI IP  +VV +++G+ +N  ++  
Sbjct: 8   AYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTM 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+LIK  M D+V   ++   K+  F G       VT+ E++ +M Q+E   Q P    
Sbjct: 67  PGYILIKMDMIDQVKDFMQKVVKLNRFPGNESKIVQVTEKEVQEMMVQLENKAQDPSFLE 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +++GE V V+DGPF +F G ++ VD  K  + + + IF R T + + ++QVEK+
Sbjct: 127 KYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 181


>gi|161870928|ref|YP_001600108.1| transcription antitermination protein [Neisseria meningitidis
           053442]
 gi|161596481|gb|ABX74141.1| transcription antitermination protein [Neisseria meningitidis
           053442]
          Length = 148

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
           +     +I +P E+VV +R GRK  SER+ +PGYVL++  MTD  +H +K TP+V GF+G
Sbjct: 1   MGDYFGQILVPVEKVVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIG 60

Query: 91  T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
                P P++  E E I+ QV+  +++P   V FEVG++V V++GPFA FNG+V+ V+ E
Sbjct: 61  GRANRPMPISQREAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYE 120

Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++++ V V IFGR TPVEL ++QVEKI
Sbjct: 121 RNKLRVSVQIFGRETPVELEFSQVEKI 147


>gi|22538197|ref|NP_689048.1| transcription antitermination protein NusG [Streptococcus
           agalactiae 2603V/R]
 gi|25012055|ref|NP_736450.1| transcription antitermination protein NusG [Streptococcus
           agalactiae NEM316]
 gi|76786867|ref|YP_330590.1| transcription antitermination protein NusG [Streptococcus
           agalactiae A909]
 gi|76797850|ref|ZP_00780114.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae 18RS21]
 gi|77406157|ref|ZP_00783229.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae H36B]
 gi|77409156|ref|ZP_00785869.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae COH1]
 gi|77411825|ref|ZP_00788159.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae CJB111]
 gi|77412987|ref|ZP_00789190.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae 515]
 gi|22535108|gb|AAN00921.1|AE014285_3 transcription antitermination protein NusG [Streptococcus
           agalactiae 2603V/R]
 gi|24413598|emb|CAD47676.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561924|gb|ABA44508.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae A909]
 gi|76586810|gb|EAO63304.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae 18RS21]
 gi|77160999|gb|EAO72107.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae 515]
 gi|77162102|gb|EAO73079.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae CJB111]
 gi|77172240|gb|EAO75396.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae COH1]
 gi|77175237|gb|EAO78034.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae H36B]
 gi|319746037|gb|EFV98316.1| transcription termination/antitermination factor NusG
           [Streptococcus agalactiae ATCC 13813]
          Length = 179

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  EL   QV
Sbjct: 127 NIKEGDVVQIIDGAFIGQEGRVVEI--ENNKVKLMINMFGSETQAELELYQV 176


>gi|195977307|ref|YP_002122551.1| transcription antitermination protein NusG [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974012|gb|ACG61538.1| transcription antitermination protein NusG [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 181

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD  +  +++TP V GF+G+  N S  T    E I   + +  Q       
Sbjct: 67  GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 127 NIKEGDVVQIIDGAFIGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQI 176


>gi|325972673|ref|YP_004248864.1| NusG antitermination factor [Spirochaeta sp. Buddy]
 gi|324027911|gb|ADY14670.1| NusG antitermination factor [Spirochaeta sp. Buddy]
          Length = 186

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WY+V  YS  E+K    I       +    + T++ +P E VV V+ G + + +R+
Sbjct: 1   MAKGWYVVHTYSGYEQKIERIINKMRETDTDFALVCTDVKVPFETVVEVKDGVRRDVKRK 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIG------FLGTGENPSPVTDSEIEHIMNQVEAA 113
             PGY+L++  + D  + T     K I              P P+  +E++ +  +    
Sbjct: 61  ILPGYILVELDLPDHSWKTWCSQVKRIQGVTGFVTPNDSVKPQPLNAAEVKSLFQKTGDL 120

Query: 114 VQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               V      F +GE+V + +GPF SF G+++ V+ EK+R+ V V IFGR TPVE+ + 
Sbjct: 121 PAEKVFKPKQSFSIGEQVRIIEGPFDSFTGVIEEVNLEKARMRVSVGIFGRSTPVEVDFL 180

Query: 172 QVEKIV 177
           QVEKI+
Sbjct: 181 QVEKIL 186


>gi|55820313|ref|YP_138755.1| transcription antitermination protein NusG [Streptococcus
           thermophilus LMG 18311]
 gi|55822203|ref|YP_140644.1| transcription antitermination protein NusG [Streptococcus
           thermophilus CNRZ1066]
 gi|116627154|ref|YP_819773.1| transcription antitermination protein NusG [Streptococcus
           thermophilus LMD-9]
 gi|228476487|ref|ZP_04061177.1| transcription termination/antitermination factor NusG
           [Streptococcus salivarius SK126]
 gi|312864059|ref|ZP_07724295.1| transcription termination/antitermination factor NusG
           [Streptococcus vestibularis F0396]
 gi|322517533|ref|ZP_08070402.1| transcription termination/antitermination factor NusG
           [Streptococcus vestibularis ATCC 49124]
 gi|55736298|gb|AAV59940.1| transcription antitermination factor [Streptococcus thermophilus
           LMG 18311]
 gi|55738188|gb|AAV61829.1| transcription antitermination factor [Streptococcus thermophilus
           CNRZ1066]
 gi|116100431|gb|ABJ65577.1| Transcription antiterminator [Streptococcus thermophilus LMD-9]
 gi|228251908|gb|EEK10954.1| transcription termination/antitermination factor NusG
           [Streptococcus salivarius SK126]
 gi|311100472|gb|EFQ58679.1| transcription termination/antitermination factor NusG
           [Streptococcus vestibularis F0396]
 gi|312277631|gb|ADQ62288.1| Transcription antitermination protein nusG [Streptococcus
           thermophilus ND03]
 gi|322123793|gb|EFX95367.1| transcription termination/antitermination factor NusG
           [Streptococcus vestibularis ATCC 49124]
          Length = 179

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q       
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F    G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEI--ENNKVKIMINMFGSETAAELELYQI 176


>gi|297620824|ref|YP_003708961.1| Transcription antitermination protein nusG [Waddlia chondrophila
           WSU 86-1044]
 gi|297376125|gb|ADI37955.1| Transcription antitermination protein nusG [Waddlia chondrophila
           WSU 86-1044]
          Length = 180

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 2/175 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W++V V S  EKK  ++I  +    G+  L+  + +P E +  V+KG++   E+R +P
Sbjct: 2   HNWFVVHVLSAQEKKVKKAIEEQRDLKGMTDLIDIVLLPVENISEVKKGQQKVVEKRMWP 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+L+K  +TD+ +  I D P VIGFLG G+ P+P+T  E++ I+  +E   ++ V    
Sbjct: 62  GYLLVKMTLTDESWGYICDVPGVIGFLG-GDQPTPLTPQEVDEILQDIEEKKEKVVQKHQ 120

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           FEVG+ V + DG F +F G V +V  +K R+ V+V IFGR T V +L + QVE++
Sbjct: 121 FEVGDNVKIIDGVFVNFVGTVTDVQPDKGRLSVQVSIFGRETQVDDLEFVQVEEV 175


>gi|253752634|ref|YP_003025775.1| transcription antitermination factor [Streptococcus suis SC84]
 gi|253754460|ref|YP_003027601.1| transcription antitermination factor [Streptococcus suis P1/7]
 gi|253756393|ref|YP_003029533.1| transcription antitermination factor [Streptococcus suis BM407]
 gi|330833594|ref|YP_004402419.1| transcription antitermination factor [Streptococcus suis ST3]
 gi|251816923|emb|CAZ52572.1| transcription antitermination factor [Streptococcus suis SC84]
 gi|251818857|emb|CAZ56700.1| transcription antitermination factor [Streptococcus suis BM407]
 gi|251820706|emb|CAR47468.1| transcription antitermination factor [Streptococcus suis P1/7]
 gi|329307817|gb|AEB82233.1| transcription antitermination factor [Streptococcus suis ST3]
          Length = 179

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G     E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q      +
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEFDI 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 127 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176


>gi|322412789|gb|EFY03697.1| transcription antitermination protein NusG [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 179

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q   V   
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLLLNMFGSETVAEVELYQI 176


>gi|237738810|ref|ZP_04569291.1| transcription antitermination protein nusG [Fusobacterium sp.
           2_1_31]
 gi|229423913|gb|EEO38960.1| transcription antitermination protein nusG [Fusobacterium sp.
           2_1_31]
          Length = 193

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++    L  +VT I +P E    + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +   V++ I++T  V GF+G G +P P+ D E+++I N +
Sbjct: 68  YVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|329116684|ref|ZP_08245401.1| transcription termination/antitermination factor NusG
           [Streptococcus parauberis NCFD 2020]
 gi|326907089|gb|EGE54003.1| transcription termination/antitermination factor NusG
           [Streptococcus parauberis NCFD 2020]
          Length = 179

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLLRAQTYNMLDNILRVEIPTQTVNVEKNGQSKEIEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I   + +  Q       
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRAILLSMGQTVDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETIAEVELYQI 176


>gi|222153827|ref|YP_002563004.1| transcription antitermination protein NusG [Streptococcus uberis
           0140J]
 gi|222114640|emb|CAR43677.1| transcription antitermination factor [Streptococcus uberis 0140J]
          Length = 180

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q       
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQI 176


>gi|237736026|ref|ZP_04566507.1| transcription antitermination protein nusG [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421840|gb|EEO36887.1| transcription antitermination protein nusG [Fusobacterium
           mortiferum ATCC 9817]
          Length = 200

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 19/192 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+++  YS  EKK    +  ++   G+  +VT+I +P E  +   +G+K    R+ FP
Sbjct: 7   KKWFMIHTYSGYEKKVKTDLEQKIETLGMGDIVTKILVPEEETIEEVRGKKKTVARKIFP 66

Query: 63  GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
           GYV+++               +    ++ +++T  V GF+G G +P P+ D E+++I   
Sbjct: 67  GYVMLEMVATREESNEGINFRVDSDAWYVVRNTNGVTGFVGVGSDPIPMEDEEVKNIFEV 126

Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
           +      E    + V  + F VG+ V V  G FA   G V  +D E  +  V + +FGR+
Sbjct: 127 IGLDLTEEEKELKEVIKINFAVGDYVKVLKGGFADQEGKVAEIDMEHKKAKVMIEMFGRM 186

Query: 164 TPVELAYNQVEK 175
           TPVE+ ++ V+K
Sbjct: 187 TPVEVDFDSVQK 198


>gi|330444705|ref|YP_004377691.1| transcription termination/antitermination factor NusG
           [Chlamydophila pecorum E58]
 gi|328807815|gb|AEB41988.1| transcription termination/antitermination factor NusG
           [Chlamydophila pecorum E58]
          Length = 182

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++      SG+   + EI +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEDFKESSGMAEFIQEIILPSENVMEVKKGEHKVVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD  +  +K T  V+ FLG G  P  +++ E+  I+  +E      V    F
Sbjct: 63  YLLVKMHLTDDSWLYVKSTAGVVEFLG-GAKPVALSEDEVRDILTDMEEKKAGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           EVG RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|24380295|ref|NP_722250.1| transcription antitermination protein NusG [Streptococcus mutans
           UA159]
 gi|290579732|ref|YP_003484124.1| putative transcription antitermination factor [Streptococcus mutans
           NN2025]
 gi|24378309|gb|AAN59556.1|AE015019_1 putative transcription antitermination factor [Streptococcus mutans
           UA159]
 gi|254996631|dbj|BAH87232.1| putative transcription antitermination factor [Streptococcus mutans
           NN2025]
          Length = 178

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 6   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEVEENRFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q   +   
Sbjct: 66  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVDIIDT 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 126 NIKEGDVVQIIDGAFVGQEGRVVEI--ENNKVKIMINMFGAETQAELELYQI 175


>gi|325977351|ref|YP_004287067.1| transcription antitermination protein nusG [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177279|emb|CBZ47323.1| Transcription antitermination protein nusG [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 183

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG FA   G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 131 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 180


>gi|254429258|ref|ZP_05042965.1| transcription termination/antitermination factor NusG [Alcanivorax
           sp. DG881]
 gi|196195427|gb|EDX90386.1| transcription termination/antitermination factor NusG [Alcanivorax
           sp. DG881]
          Length = 150

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 4/149 (2%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
           ++ L  EI +P+E VV ++ G+K  SER+FFPGYVL++  M D  +H IK+TPKV+GF+G
Sbjct: 1   MEELFGEILVPTEEVVEIKGGQKRKSERKFFPGYVLVQMEMCDDSWHLIKETPKVMGFIG 60

Query: 91  ----TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
                    SP+T  E + I+ +++ AV++P     FE GE V V+DGPFA FNG+++ V
Sbjct: 61  EDPKNPGRVSPITQKEADAILRRMDDAVEKPKPKTLFEAGEVVRVNDGPFADFNGVIEEV 120

Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 NYEKSRLQVAVMIFGRSTPVELEFGQVEK 149


>gi|294781917|ref|ZP_06747249.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481728|gb|EFG29497.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 1_1_41FAA]
          Length = 193

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++    L  +VT I +P E  + + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKIGTLQLRDVVTNILVPEEESIEIVRGKPKKIYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +   V++ I++T  V GF+G G +P P+ D E+++I N +
Sbjct: 68  YVMLEIEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|313890368|ref|ZP_07823999.1| transcription termination/antitermination factor NusG
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121211|gb|EFR44319.1| transcription termination/antitermination factor NusG
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 204

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 31  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNIEKNGQTKEVEENRFP 90

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q   V   
Sbjct: 91  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTIDVFDT 150

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 151 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLTLNMFGSETIAEVELYQI 200


>gi|306830387|ref|ZP_07463557.1| transcription termination/antitermination factor NusG
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304427412|gb|EFM30514.1| transcription termination/antitermination factor NusG
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 215

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 43  KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 102

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 103 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 162

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG FA   G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 163 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 212


>gi|15835611|ref|NP_300135.1| transcription antitermination protein NusG [Chlamydophila
           pneumoniae J138]
 gi|16752968|ref|NP_445241.1| transcription antitermination protein NusG [Chlamydophila
           pneumoniae AR39]
 gi|18203670|sp|Q9Z9A5|NUSG_CHLPN RecName: Full=Transcription antitermination protein nusG
 gi|7189614|gb|AAF38507.1| transcription antitermination protein NusG [Chlamydophila
           pneumoniae AR39]
 gi|8978449|dbj|BAA98286.1| transcriptional antitermination [Chlamydophila pneumoniae J138]
          Length = 182

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++      SG+   + EI +P E V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  ++ FLG G  P  +++ E+  I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWLYVKSTAGIVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           EVG RV ++DG F +F G V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGTVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|15674369|ref|NP_268543.1| transcription antitermination protein NusG [Streptococcus pyogenes
           M1 GAS]
 gi|19745330|ref|NP_606466.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS8232]
 gi|21909663|ref|NP_663931.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS315]
 gi|71909952|ref|YP_281502.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS5005]
 gi|139473014|ref|YP_001127729.1| transcription antitermination protein NusG [Streptococcus pyogenes
           str. Manfredo]
 gi|57014085|sp|P68893|NUSG_STRP1 RecName: Full=Transcription antitermination protein nusG
 gi|57014086|sp|P68894|NUSG_STRP3 RecName: Full=Transcription antitermination protein nusG
 gi|57014087|sp|P68895|NUSG_STRP8 RecName: Full=Transcription antitermination protein nusG
 gi|57015406|sp|Q5XE43|NUSG_STRP6 RecName: Full=Transcription antitermination protein nusG
 gi|13621457|gb|AAK33264.1| putative transcription antitermination factor [Streptococcus
           pyogenes M1 GAS]
 gi|19747432|gb|AAL96965.1| putative transcription antitermination factor [Streptococcus
           pyogenes MGAS8232]
 gi|21903845|gb|AAM78734.1| putative transcription antitermination factor [Streptococcus
           pyogenes MGAS315]
 gi|56403933|dbj|BAD77788.1| hypothetical TRANSCRIPTION ANTITERMINATION PROTEIN [Streptococcus
           dysgalactiae subsp. equisimilis]
 gi|71852734|gb|AAZ50757.1| transcription antitermination protein [Streptococcus pyogenes
           MGAS5005]
 gi|134271260|emb|CAM29476.1| transcription antitermination factor [Streptococcus pyogenes str.
           Manfredo]
          Length = 179

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q   V   
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 176


>gi|150008879|ref|YP_001303622.1| transcription anti-termination protein [Parabacteroides distasonis
           ATCC 8503]
 gi|255014707|ref|ZP_05286833.1| transcription anti-termination protein [Bacteroides sp. 2_1_7]
 gi|256841127|ref|ZP_05546634.1| transcription termination/antitermination factor NusG
           [Parabacteroides sp. D13]
 gi|262383752|ref|ZP_06076888.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 2_1_33B]
 gi|298375892|ref|ZP_06985848.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_19]
 gi|301311924|ref|ZP_07217846.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 20_3]
 gi|149937303|gb|ABR44000.1| transcription anti-termination protein [Parabacteroides distasonis
           ATCC 8503]
 gi|256736970|gb|EEU50297.1| transcription termination/antitermination factor NusG
           [Parabacteroides sp. D13]
 gi|262294650|gb|EEY82582.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 2_1_33B]
 gi|298266929|gb|EFI08586.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_19]
 gi|300830026|gb|EFK60674.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 20_3]
          Length = 180

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            ++Y+++  S  E K  E +   L  + L   V+++ IP+E+  +VR G+KV  ER + P
Sbjct: 6   KKFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121
           GYVL++A +  +V H +++ P VIGFLG  + P P+  +E+  I+  V+    Q+    +
Sbjct: 66  GYVLVEAALVGEVAHRLRNIPNVIGFLGGSDTPVPLRPAEVNRILGTVDELQEQQEDLDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F VGE V ++ GPF+ F GI++ V+ EK ++ V V +FGR TP+EL Y QVEK
Sbjct: 126 QFYVGESVKITFGPFSGFTGIIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179


>gi|306832628|ref|ZP_07465767.1| transcription termination/antitermination factor NusG
           [Streptococcus bovis ATCC 700338]
 gi|304425236|gb|EFM28363.1| transcription termination/antitermination factor NusG
           [Streptococcus bovis ATCC 700338]
          Length = 215

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 43  KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFP 102

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 103 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 162

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG FA   G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 163 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 212


>gi|313896787|ref|ZP_07830335.1| transcription termination/antitermination factor NusG [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320530078|ref|ZP_08031148.1| transcription termination/antitermination factor NusG [Selenomonas
           artemidis F0399]
 gi|312974704|gb|EFR40171.1| transcription termination/antitermination factor NusG [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320137511|gb|EFW29423.1| transcription termination/antitermination factor NusG [Selenomonas
           artemidis F0399]
          Length = 183

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K   ++   +  + +  ++  + +P E  + V+ G++    R+ FPGY
Sbjct: 18  WYVIHTYSGYENKVKANLERLMHSASMSDMLFNVVVPVEDELEVKDGKEKVVPRKVFPGY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+  ++ +  ++ +++T  V GF+G+ ++P P+T  E E I++   +    P       
Sbjct: 78  VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGGAPKRRAKVA 135

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+ V +  G F  + G V ++D   +RV V++      TP+++  +QVE I
Sbjct: 136 VGDNVRIVSGAFEDYAGKVISIDSAGARVQVDIE----GTPIDIEIDQVELI 183


>gi|154491726|ref|ZP_02031352.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC
           43184]
 gi|218264360|ref|ZP_03478217.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii
           DSM 18315]
 gi|154087967|gb|EDN87012.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC
           43184]
 gi|218222058|gb|EEC94708.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii
           DSM 18315]
          Length = 180

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            ++Y+++  S  E K  E +   L  + L   V+++ IP+E+  +VR G+KV  ER + P
Sbjct: 6   KKFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121
           GYVL++A +  +V H +++ P VIGFLG  +NP P+  +E+  I+  V+    Q+    +
Sbjct: 66  GYVLVEAALVGEVAHRLRNIPNVIGFLGGSDNPVPLRPAEVSRILGTVDELQEQQDDLDI 125

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            F VGE V ++ GPF  F G+++ V+ EK ++ V V +FGR TP+EL Y QVEK
Sbjct: 126 QFYVGENVKITFGPFNGFTGVIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179


>gi|298372192|ref|ZP_06982182.1| transcription termination/antitermination factor NusG
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275096|gb|EFI16647.1| transcription termination/antitermination factor NusG
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 186

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+++  S  EK+  E I   L + G L   V+++ IP+ERV  VR G+KV  ER F P
Sbjct: 7   KWYVLRAMSGKEKQVKEYIDIELEKGGELSKYVSQVVIPTERVYVVRNGKKVIKERTFLP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-----SEIEHIMNQVEAAVQRP 117
           GYVLI+  +T ++   +++ P V+GFLG  E+P           E+  ++  V++  + P
Sbjct: 67  GYVLIEVALTREISGWLRNVPNVLGFLGVNESPGNYQPIPLRSQEVTRLLGTVDSLDENP 126

Query: 118 VSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              +  + VGE V V  GPF  F G+V+ V  EK R+ V V IFGR T +EL + QVEK
Sbjct: 127 EELLEPYLVGETVRVITGPFNGFTGVVEEVSNEKRRMKVNVKIFGRNTTLELGFMQVEK 185


>gi|42527927|ref|NP_973025.1| transcription antitermination protein NusG [Treponema denticola
           ATCC 35405]
 gi|41818972|gb|AAS12944.1| transcription antitermination protein NusG [Treponema denticola
           ATCC 35405]
 gi|325474848|gb|EGC78034.1| transcription antitermination protein NusG [Treponema denticola
           F0402]
          Length = 185

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 9/185 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WYI+  YS  E K   +I   + +  +    VT+I IP E V+  + G+K N +R+
Sbjct: 1   MAKAWYILHTYSGYENKIERTIRTLIEKGIISADFVTDIKIPEELVIENKGGKKRNVKRK 60

Query: 60  FFPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113
           F PGY+L++  + D  + +    I+    V GFLGT     P P++  E + I+ +    
Sbjct: 61  FLPGYMLVEMNLPDLGWKSVCSEIRKIQGVTGFLGTAGNEKPQPISPDEAKEILQKTGEI 120

Query: 114 VQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                  V   F  G+ V + +G FASF G++  V  +K+++ V V IFGR TPVE+  +
Sbjct: 121 KGDKNIRVIQNFSEGQHVKIIEGAFASFTGVIDEVMADKNKLRVMVAIFGRTTPVEVEMS 180

Query: 172 QVEKI 176
           Q E I
Sbjct: 181 QAEII 185


>gi|292670290|ref|ZP_06603716.1| transcription antitermination factor NusG [Selenomonas noxia ATCC
           43541]
 gi|292648021|gb|EFF65993.1| transcription antitermination factor NusG [Selenomonas noxia ATCC
           43541]
          Length = 183

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K   ++   +  + +  ++  + +P E  + V+ G++    R+ FPGY
Sbjct: 18  WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+  ++ +  ++ +++T  V GF+G+ ++P P+T  E E I++   +    P       
Sbjct: 78  VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGGAPKRRTKVS 135

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+ V ++ G F  + G + ++D    RV V+V      TP+++  +QVE I
Sbjct: 136 VGDTVRIASGAFEDYAGKITSIDSSGLRVQVDVE----GTPLDVEIDQVELI 183


>gi|28895041|ref|NP_801391.1| transcription antitermination protein NusG [Streptococcus pyogenes
           SSI-1]
 gi|50913531|ref|YP_059503.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS10394]
 gi|71902802|ref|YP_279605.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS6180]
 gi|94987771|ref|YP_595872.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS9429]
 gi|94989649|ref|YP_597749.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS10270]
 gi|94991642|ref|YP_599741.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS2096]
 gi|94993540|ref|YP_601638.1| transcription antitermination protein NusG [Streptococcus pyogenes
           MGAS10750]
 gi|209558715|ref|YP_002285187.1| transcription antitermination protein NusG [Streptococcus pyogenes
           NZ131]
 gi|251783420|ref|YP_002997725.1| transcription antitermination protein NusG [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|306828165|ref|ZP_07461428.1| transcription termination/antitermination factor NusG
           [Streptococcus pyogenes ATCC 10782]
 gi|28810286|dbj|BAC63224.1| putative transcription antitermination factor [Streptococcus
           pyogenes SSI-1]
 gi|50902605|gb|AAT86320.1| Transcription antitermination protein [Streptococcus pyogenes
           MGAS10394]
 gi|71801897|gb|AAX71250.1| transcription antitermination protein [Streptococcus pyogenes
           MGAS6180]
 gi|94541279|gb|ABF31328.1| transcription antitermination protein [Streptococcus pyogenes
           MGAS9429]
 gi|94543157|gb|ABF33205.1| Transcription antitermination protein nusG [Streptococcus pyogenes
           MGAS10270]
 gi|94545150|gb|ABF35197.1| Transcription antitermination protein nusG [Streptococcus pyogenes
           MGAS2096]
 gi|94547048|gb|ABF37094.1| Transcription antitermination protein nusG [Streptococcus pyogenes
           MGAS10750]
 gi|209539916|gb|ACI60492.1| Transcription antitermination protein NusG [Streptococcus pyogenes
           NZ131]
 gi|242392052|dbj|BAH82511.1| transcription antitermination protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|304429702|gb|EFM32748.1| transcription termination/antitermination factor NusG
           [Streptococcus pyogenes ATCC 10782]
 gi|323128169|gb|ADX25466.1| transcription antitermination protein NusG [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 184

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 12  KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 71

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q   V   
Sbjct: 72  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 131

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F    G V  +  E ++V + + +FG  T  E+   Q+
Sbjct: 132 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 181


>gi|320547809|ref|ZP_08042093.1| transcription termination/antitermination factor NusG
           [Streptococcus equinus ATCC 9812]
 gi|320447569|gb|EFW88328.1| transcription termination/antitermination factor NusG
           [Streptococcus equinus ATCC 9812]
          Length = 183

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVVDT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG FA   G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 131 NIKAGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 180


>gi|19705332|ref|NP_602827.1| transcription antitermination protein nusG [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296329159|ref|ZP_06871661.1| transcription termination/antitermination factor NusG
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|19713309|gb|AAL94126.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296153733|gb|EFG94549.1| transcription termination/antitermination factor NusG
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 193

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++   G   +VT I +P E +  + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +  +V++ +++T  V GF+G G +P P+ + E+++I N +
Sbjct: 68  YVMLEMEATREENENGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GVKTPKENVKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|146321834|ref|YP_001201545.1| transcription antitermination protein NusG [Streptococcus suis
           98HAH33]
 gi|145692640|gb|ABP93145.1| Transcription antiterminator [Streptococcus suis 98HAH33]
          Length = 179

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G     E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q      +
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEFDI 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ VC+ DG F  + G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 127 DVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176


>gi|227486738|ref|ZP_03917054.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235326|gb|EEI85341.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC
           51172]
          Length = 192

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 5/171 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V  Y+  E +  + I   +        + ++T+P+E  V V+   K    R+ FPG
Sbjct: 27  RWYVVHTYTGYENRVADKIQMMIDNEQNPD-IVDVTVPTEEYVEVKNNDKKVKTRKLFPG 85

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV++K  +T K ++ I++T  V GF+G   +P P+T +E+     +     + PV ++  
Sbjct: 86  YVMVKMNVTSKSWYIIRNTQGVTGFVGPDGDPVPLTKAEVRKFGVK----EKEPVLNIKV 141

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           + G+ V +  GPF  F   +  +D EK  +   V +FGR T ++L Y+ +E
Sbjct: 142 KPGDDVNIIAGPFKDFVAKIDEIDNEKGIIKAYVDMFGRDTLIDLEYSDIE 192


>gi|34762878|ref|ZP_00143861.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887442|gb|EAA24529.1| Transcription antitermination protein nusG [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 193

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++   G   +VT I +P E +  + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +  +V++ +++T  V GF+G G +P P+ + E+++I N +
Sbjct: 68  YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|237743080|ref|ZP_04573561.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1]
 gi|260495681|ref|ZP_05815804.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 3_1_33]
 gi|229433376|gb|EEO43588.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1]
 gi|260196746|gb|EEW94270.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 3_1_33]
          Length = 193

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++   G   +VT I +P E +  + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +  +V++ +++T  V GF+G G +P P+ + E+++I N +
Sbjct: 68  YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    V F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GVKTPKETIKVDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|256028511|ref|ZP_05442345.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
 gi|289766431|ref|ZP_06525809.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
 gi|289717986|gb|EFD81998.1| transcription antitermination protein nusG [Fusobacterium sp. D11]
          Length = 193

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++   G   +VT I +P E +  + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +  +V++ +++T  V GF+G G +P P+ + E+++I N +
Sbjct: 68  YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    V F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GVKTPKETIQVDFTEGDYVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|237740928|ref|ZP_04571409.1| transcription antitermination protein nusG [Fusobacterium sp.
           4_1_13]
 gi|256846757|ref|ZP_05552213.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 3_1_36A2]
 gi|294784292|ref|ZP_06749586.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 3_1_27]
 gi|229430972|gb|EEO41184.1| transcription antitermination protein nusG [Fusobacterium sp.
           4_1_13]
 gi|256717977|gb|EEU31534.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 3_1_36A2]
 gi|294488048|gb|EFG35400.1| transcription termination/antitermination factor NusG
           [Fusobacterium sp. 3_1_27]
          Length = 193

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++   G   +VT I +P E +  + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +  +V++ +++T  V GF+G G +P P+ + E+++I N +
Sbjct: 68  YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|237802743|ref|YP_002887937.1| transcription antitermination protein NusG [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273977|emb|CAX10769.1| transcription antitermination protein [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 182

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +S+      SG+   + +I +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  V+ FLG G  P  +++ E+++I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
           EVG +V ++DG F +F G++  V  +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVLSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176


>gi|254302296|ref|ZP_04969654.1| transcription antitermination protein NusG [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322488|gb|EDK87738.1| transcription antitermination protein NusG [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 193

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++  YS  EKK    +  ++   G   +VT I +P E +  + +G+     R+ FP 
Sbjct: 8   KWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67

Query: 64  YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
           YV+++               +  +V++ +++T  V GF+G G +P P+ + E+++I N +
Sbjct: 68  YVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                +    + F  G+ V +  G F    G V  +D E  RV V V IFGR+TPVE+  
Sbjct: 128 GVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGRMTPVEIEV 187

Query: 171 NQVEKI 176
           + V K+
Sbjct: 188 DGVLKV 193


>gi|171778894|ref|ZP_02919956.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282540|gb|EDT47964.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 183

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G+    E   FP
Sbjct: 11  KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFP 70

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I + + +  Q       
Sbjct: 71  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVVDT 130

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V + DG F+   G V  +  E ++V + + +FG  T  EL   Q+
Sbjct: 131 NIKAGDVVQIIDGAFSGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 180


>gi|15618000|ref|NP_224284.1| transcription antitermination protein NusG [Chlamydophila
           pneumoniae CWL029]
 gi|33241411|ref|NP_876352.1| transcription antitermination protein NusG [Chlamydophila
           pneumoniae TW-183]
 gi|4376333|gb|AAD18229.1| Transcriptional Antitermination [Chlamydophila pneumoniae CWL029]
 gi|33235919|gb|AAP98009.1| transcription antitermination factor [Chlamydophila pneumoniae
           TW-183]
          Length = 182

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++      SG+   + EI +P E V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  ++ FLG G  P  +++ E+  I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWLYVKSTAGIVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           EVG RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|212550368|ref|YP_002308685.1| transcription antitermination protein NusG [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548606|dbj|BAG83274.1| transcription antitermination protein NusG [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 177

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 3/177 (1%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M  R+Y+++  +  E K  E +   +   S L   + ++ +P+ERVV   +G+    ER 
Sbjct: 1   MERRFYVLRAVNGKESKVKECLESEIRKNSNLRDCILQVIVPTERVVRNIRGKNYRKERA 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PV 118
           F PGYV+I+AV+  +V H IK    V GFLG G  P P+   E+  I+ QV+    R   
Sbjct: 61  FLPGYVVIEAVLKSEVVHFIKSINFVSGFLG-GNRPVPLRPVEVSRILGQVDEMQNRTEE 119

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             V + VGE V ++ GPF  F G ++ V  +K R+ V V IFGR +P+EL Y QVEK
Sbjct: 120 FDVNYNVGETVKITFGPFTGFYGEIEEVHPDKKRLKVMVKIFGRKSPLELGYLQVEK 176


>gi|304437205|ref|ZP_07397166.1| transcription termination/antitermination factor NusG [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304369867|gb|EFM23531.1| transcription termination/antitermination factor NusG [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 183

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K   ++   +  + +  ++  + +P E  + V+ G++    R+ FPGY
Sbjct: 18  WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+  ++ +  ++ +++T  V GF+G+ ++P P+T  E E I++   +    P      +
Sbjct: 78  VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGGAPKRRAKVD 135

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+ V +  G F  + G + ++D    RV V+V      T +++  +QVE+I
Sbjct: 136 VGDTVRIISGAFEDYAGKITSIDTSSMRVQVDVD----GTQLDVEIDQVERI 183


>gi|269302953|gb|ACZ33053.1| transcription termination/antitermination factor NusG
           [Chlamydophila pneumoniae LPCoLN]
          Length = 182

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++      SG+   + EI +P E V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LIK  +TD+ +  +K T  V+ FLG G  P  +++ E+  I+  +E      V    F
Sbjct: 63  YLLIKMHLTDESWLYVKSTAGVVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           EVG RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|85057746|ref|YP_456662.1| transcription antitermination protein nusG [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789851|gb|ABC65583.1| transcription antitermination protein nusG [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 199

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI Q YS  E    + +  R+   G+  LV+ +  P E     R  G+KV  ER+ +P
Sbjct: 25  KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 84

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+ ++TD+ +  +++TP++ GFLG+    S         I   +            
Sbjct: 85  GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 144

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +G++V +  G F    G V ++D ++ ++ +EV +FGR TPVE+++N  ++I
Sbjct: 145 KFIGKKVEIISGSFVGQIGQVSSIDADREKMILEVDLFGRATPVEISFNDFKEI 198


>gi|260885404|ref|ZP_05734982.2| transcription termination/antitermination factor NusG [Prevotella
           tannerae ATCC 51259]
 gi|260852286|gb|EEX72155.1| transcription termination/antitermination factor NusG [Prevotella
           tannerae ATCC 51259]
          Length = 180

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 106/175 (60%), Gaps = 1/175 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+++  S  E K  E I   +  +     V+++ +P+E++V V  G++   ER + 
Sbjct: 5   EMAWYVLRAISGKENKVKEYIDAEIKLNAFQGNVSQVLVPTEKIVQVHNGKRTVKERNYL 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120
           PGYVL++A +  ++ H +++TP V+GFL    +P+P+ +SE+  I+ + +         +
Sbjct: 65  PGYVLVEAKLVGEITHMLRNTPNVLGFLPDTNDPTPLRESEVNRILGKADEEPDVNEALT 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V F +G+ V V++GPF+ F+G V+ +D+EK +V V V +FGR T ++L + QVEK
Sbjct: 125 VPFVIGDSVKVTEGPFSGFSGTVEKIDDEKKKVTVTVKVFGRSTGLDLGFMQVEK 179


>gi|291276547|ref|YP_003516319.1| putative transcription antitermination protein [Helicobacter
           mustelae 12198]
 gi|290963741|emb|CBG39576.1| putative transcription antitermination protein [Helicobacter
           mustelae 12198]
          Length = 173

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 4/177 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY +Q YS  E+   +++   L  + ++  +    +P+E V   + G+K+  +R  
Sbjct: 1   MLLDWYAIQTYSGSEQSVEKAVKNLLDNANIECRI---VVPTEDVFEYKNGKKITKKRSI 57

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +PGYV I+  +T  ++H I+  PKV  F+G  + P+P++  ++  I+ +VE     P   
Sbjct: 58  YPGYVFIQVNLTTSIWHMIQRLPKVSKFIGEDKKPTPLSREDVASILEKVEKRSD-PKPK 116

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           ++F  GE V + +GPF +F  +V+  D E  ++ + V IFGR TP+E+ Y+QVEKIV
Sbjct: 117 IYFGKGEIVRIINGPFINFTAMVEEYDVEHEKLKLNVSIFGRNTPIEILYSQVEKIV 173


>gi|126697627|ref|YP_001086524.1| transcription antitermination protein [Clostridium difficile 630]
 gi|255099220|ref|ZP_05328197.1| transcription antitermination protein [Clostridium difficile
           QCD-63q42]
 gi|255305002|ref|ZP_05349174.1| transcription antitermination protein [Clostridium difficile ATCC
           43255]
 gi|255654149|ref|ZP_05399558.1| transcription antitermination protein [Clostridium difficile
           QCD-23m63]
 gi|296449812|ref|ZP_06891580.1| transcription termination/antitermination factor NusG [Clostridium
           difficile NAP08]
 gi|296877876|ref|ZP_06901897.1| transcription termination/antitermination factor NusG [Clostridium
           difficile NAP07]
 gi|115249064|emb|CAJ66875.1| transcription antitermination protein [Clostridium difficile]
 gi|296261356|gb|EFH08183.1| transcription termination/antitermination factor NusG [Clostridium
           difficile NAP08]
 gi|296431130|gb|EFH16956.1| transcription termination/antitermination factor NusG [Clostridium
           difficile NAP07]
          Length = 180

 Score =  127 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
              WY+V  YS  E K   +I   +   G++  + ++ +P+E VV   + G++   +R+ 
Sbjct: 6   EASWYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKV 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P YVL+K ++TD+ ++ +++T  V GF+G G  P P+++ E+   M       +   S 
Sbjct: 66  YPSYVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEV-KAMGIDTTDPKVVNSD 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + FE+G+ V VS GPF+   G ++ +D E   V V +  FG+ T   +    +EKI
Sbjct: 125 IDFEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180


>gi|325921468|ref|ZP_08183323.1| transcription antitermination protein nusG [Xanthomonas gardneri
           ATCC 19865]
 gi|325548015|gb|EGD19014.1| transcription antitermination protein nusG [Xanthomonas gardneri
           ATCC 19865]
          Length = 165

 Score =  127 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 68/163 (41%), Positives = 106/163 (65%), Gaps = 10/163 (6%)

Query: 23  GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV---------MTD 73
             R+ R+ ++    ++ +P+E V+ +R G+K  SER+FFPGYVL++           + +
Sbjct: 2   RDRIVRAEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEAGIPRIDN 61

Query: 74  KVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
           + +H +K+T KV+GF+G   + P P+ D E + I+ +V+  V++P   V FE G+ V V+
Sbjct: 62  ESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVT 121

Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           DGPF  FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 122 DGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 164


>gi|229497072|ref|ZP_04390776.1| transcription termination/antitermination factor NusG
           [Porphyromonas endodontalis ATCC 35406]
 gi|229315997|gb|EEN81926.1| transcription termination/antitermination factor NusG
           [Porphyromonas endodontalis ATCC 35406]
          Length = 184

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 5/178 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
             R+Y+++  S  EKK  E+I   +     S +   V  + +P+E+V++ RK +KV  ER
Sbjct: 7   EKRFYVLRAISGKEKKVKETIEREMSLPEPSTISQRVFRVVVPTEKVMTQRKTKKVIIER 66

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
            +  GYVLI+ +M+  + + ++D P VIGFLG  +NPSP++ +E+E ++++V+   + P 
Sbjct: 67  PYLSGYVLIECMMSQLLINALRDLPDVIGFLGN-DNPSPLSLAEVEKLLHEVDTTNEGPD 125

Query: 119 SSVFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                 V GE V + DG F  F+  ++ +  EK ++ V V IFGR TP+EL Y QVEK
Sbjct: 126 VVDMQFVLGESVKIIDGAFVGFSATIEEILSEKKKLKVMVKIFGRKTPLELGYAQVEK 183


>gi|254973718|ref|ZP_05270190.1| transcription antitermination protein [Clostridium difficile
           QCD-66c26]
 gi|255091108|ref|ZP_05320586.1| transcription antitermination protein [Clostridium difficile CIP
           107932]
 gi|255312762|ref|ZP_05354345.1| transcription antitermination protein [Clostridium difficile
           QCD-76w55]
 gi|255515522|ref|ZP_05383198.1| transcription antitermination protein [Clostridium difficile
           QCD-97b34]
 gi|255648616|ref|ZP_05395518.1| transcription antitermination protein [Clostridium difficile
           QCD-37x79]
 gi|260681833|ref|YP_003213118.1| transcription antitermination protein [Clostridium difficile CD196]
 gi|260685431|ref|YP_003216564.1| transcription antitermination protein [Clostridium difficile
           R20291]
 gi|306518739|ref|ZP_07405086.1| transcription antitermination protein [Clostridium difficile
           QCD-32g58]
 gi|260207996|emb|CBA60162.1| transcription antitermination protein [Clostridium difficile CD196]
 gi|260211447|emb|CBE01557.1| transcription antitermination protein [Clostridium difficile
           R20291]
          Length = 180

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 2/176 (1%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60
              WY+V  YS  E K   +I   +   G++  + ++ +P+E VV   + G++   +R+ 
Sbjct: 6   EASWYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKV 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P YVL+K ++TD+ ++ +++T  V GF+G G  P P+++ E+   M       +   S 
Sbjct: 66  YPSYVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEV-KAMGIDTTDPKVVNSD 124

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V FE+G+ V VS GPF+   G ++ +D E   V V +  FG+ T   +    +EKI
Sbjct: 125 VDFEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180


>gi|319759050|gb|ADV70992.1| transcription antitermination factor [Streptococcus suis JS14]
          Length = 179

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G     E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  +++TP V GF+G+  N S  T    E I   + +  Q      +
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEFDI 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ V + D  F  + G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 127 DVKVGDTVRIIDSAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176


>gi|213019489|ref|ZP_03335295.1| transcription antiterminator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994911|gb|EEB55553.1| transcription antiterminator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 256

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SN E+K  + I     R  +++    + IP E +  +  K +K    R+ FP
Sbjct: 78  KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 137

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I + PK   V GFL  G  P  + D+EI  + + +  A +    
Sbjct: 138 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 197

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S  +E GE+V ++DG F +F G V  V++EK  +++EV I G+ T +EL   QVEKI
Sbjct: 198 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 254


>gi|58699178|ref|ZP_00373995.1| transcription antitermination protein NusG, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534308|gb|EAL58490.1| transcription antitermination protein NusG, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 246

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SNCE+K  + I     R G++    E+ IP E +  V  K +K+ + R+ FP
Sbjct: 68  KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 127

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I   PK   V GFL  G  P  + D EI  + N +  A +    
Sbjct: 128 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 187

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +E GE+V ++DG F +F G V  V++EK  ++VEV I G+ T +EL   QVEKI
Sbjct: 188 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 244


>gi|29840454|ref|NP_829560.1| transcription antitermination protein NusG [Chlamydophila caviae
           GPIC]
 gi|29834803|gb|AAP05438.1| transcription antitermination protein NusG [Chlamydophila caviae
           GPIC]
          Length = 182

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++      SG+   + EI +P E V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LIK  +TD+ +  +K+ P V+ FLG G  P  +++ E+ +I+  +E      V    F
Sbjct: 63  YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           +VG RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|329943041|ref|ZP_08291815.1| transcription termination/antitermination factor NusG
           [Chlamydophila psittaci Cal10]
 gi|313848197|emb|CBY17198.1| putative transcription antitermination protein [Chlamydophila
           psittaci RD1]
 gi|325506733|gb|ADZ18371.1| transcription antitermination factor [Chlamydophila psittaci 6BC]
 gi|328814588|gb|EGF84578.1| transcription termination/antitermination factor NusG
           [Chlamydophila psittaci Cal10]
 gi|328914875|gb|AEB55708.1| transcription termination/antitermination factor NusG
           [Chlamydophila psittaci 6BC]
          Length = 182

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++      SG+   + EI +P E V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LIK  +TD+ +  +K+ P V+ FLG G  P  +++ E+ +I+  +E      V    F
Sbjct: 63  YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           +VG RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|310777978|ref|YP_003966311.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926]
 gi|309747301|gb|ADO81963.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926]
          Length = 198

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 18/191 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+++  YS  EKK    +  ++       +VT I +P E  V +R+G+K    R+ FP
Sbjct: 7   KKWFMIHTYSGYEKKVKTDLEQKIETLEKGEIVTRILVPEEESVELRRGKKKVVARKLFP 66

Query: 63  GYVLIKAVM-------------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
           GYV+++ ++                 ++ I++T  V GF+G G +P P+ D E+E+I   
Sbjct: 67  GYVMVEMIVTREESADGINFKVDSDAWYIIRNTNGVTGFVGVGSDPIPMEDEEVENIFRV 126

Query: 110 V-----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
           +     +    +    + F VG+ V + +G  +   G V  +D E  RV V V +FGR+T
Sbjct: 127 IGLNDGDDKEVKETVQINFSVGDYVELLEGGLSGHGGKVAEIDMEHKRVKVMVEMFGRMT 186

Query: 165 PVELAYNQVEK 175
           PVE+ ++ V+K
Sbjct: 187 PVEVGFDGVKK 197


>gi|42519937|ref|NP_965852.1| transcription antitermination protein NusG, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42409674|gb|AAS13786.1| transcription antitermination protein NusG, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 196

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SNCE+K  + I     R G++    E+ IP E +  V  K +K+ + R+ FP
Sbjct: 18  KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I + PK   V GFL  G  P  + D EI  + N +  A +    
Sbjct: 78  GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETRKL 137

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +E GE+V ++DG F +F G V  V++EK  ++VEV I G+ T +EL   QVEKI
Sbjct: 138 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 194


>gi|190570973|ref|YP_001975331.1| transcription antiterminator [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357245|emb|CAQ54667.1| transcription antiterminator [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 278

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SN E+K  + I     R  +++    + IP E +  +  K +K    R+ FP
Sbjct: 100 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 159

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I + PK   V GFL  G  P  + D+EI  + + +  A +    
Sbjct: 160 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 219

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S  +E GE+V ++DG F +F G V  V++EK  +++EV I G+ T +EL   QVEKI
Sbjct: 220 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 276


>gi|62185279|ref|YP_220064.1| transcription antitermination protein NusG [Chlamydophila abortus
           S26/3]
 gi|62148346|emb|CAH64113.1| putative transcription antitermination protein [Chlamydophila
           abortus S26/3]
          Length = 182

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +++ G    SG+   + EI +P E V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKALEGFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LIK  +TD+ +  +K+ P V+ FLG G  P  +++ E+ +I+  +E      V    F
Sbjct: 63  YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           +VG RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|225631286|ref|ZP_03787965.1| Transcription antiterminator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591020|gb|EEH12223.1| Transcription antiterminator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 278

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SNCE+K  + I     R G++    E+ IP E +  V  K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I + PK   V GFL  G  P  + D EI  + N +  A +    
Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +E GE+V ++DG F +F G V  V++EK  ++VEV I G+ T +EL   QVEKI
Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276


>gi|146319637|ref|YP_001199349.1| transcription antitermination protein NusG [Streptococcus suis
           05ZYH33]
 gi|145690443|gb|ABP90949.1| Transcription antiterminator [Streptococcus suis 05ZYH33]
          Length = 179

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G     E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAHTYNMWENILRVEIPNQTVQVEKNGEVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121
           GYVL++ VMTD+ +  + +TP V GF+G+  N S       E I   +    Q      +
Sbjct: 67  GYVLVEMVMTDEAWFVVCNTPNVTGFVGSHGNRSKPNPLLEEEIRQILVFMGQTVQEFDI 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +VG+ VC+ DG F  + G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 127 DVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176


>gi|225629888|ref|YP_002726679.1| Transcription antiterminator [Wolbachia sp. wRi]
 gi|225591869|gb|ACN94888.1| Transcription antiterminator [Wolbachia sp. wRi]
          Length = 278

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SNCE+K  + I     R G++    E+ IP E +  V  K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I   PK   V GFL  G  P  + D EI  + N +  A +    
Sbjct: 160 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +E GE+V ++DG F +F G V  V++EK  ++VEV I G+ T +EL   QVEKI
Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276


>gi|203284306|ref|YP_002222046.1| transcription antitermination factor [Borrelia duttonii Ly]
 gi|203287842|ref|YP_002222857.1| transcription antitermination factor [Borrelia recurrentis A1]
 gi|201083749|gb|ACH93340.1| transcription antitermination factor [Borrelia duttonii Ly]
 gi|201085062|gb|ACH94636.1| transcription antitermination factor [Borrelia recurrentis A1]
          Length = 184

 Score =  124 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++Q +S  EKK  + I   +S     + V ++  P ERV  +R G+K   ER+ 
Sbjct: 1   MSRAWYVLQTFSQYEKKIEQEIKLLISEGVFGNNVLDVKAPIERVEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  ++D+ + +    I     V+ F+GT   + P P++D E++ +        
Sbjct: 61  WPGYILIELDLSDQEWKSTVANIIKISGVVNFVGTTKEQKPLPISDEEVKSVFMLAGEIK 120

Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                 +   FE GERV +  GPF SF G++ ++D EK ++ V V IFGR TPVE+ +  
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|126640370|ref|YP_001083354.1| transcription antitermination protein [Acinetobacter baumannii ATCC
           17978]
          Length = 160

 Score =  124 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 1/160 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+ RS +     ++ +P+E VV ++ G+K  SER+FFPGYVL++  M D  +H 
Sbjct: 1   MRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPGYVLVEMEMNDDTWHI 60

Query: 79  IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +K+ PKV+GF+G   E P+P+T  E + I+ +V    + P     FE GE + V DGPF 
Sbjct: 61  VKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTMFEPGEELLVIDGPFT 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            F G+V+ V  +KSR+ + + +F R T VEL + QVEK +
Sbjct: 121 DFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 160


>gi|89898122|ref|YP_515232.1| transcription antitermination protein NusG [Chlamydophila felis
           Fe/C-56]
 gi|89331494|dbj|BAE81087.1| transcription antitermination [Chlamydophila felis Fe/C-56]
          Length = 182

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EK   +++      SG+   + EI +P E V+ V++G     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKTVKKALEDFKESSGMTDFIQEIVLPIENVMEVKRGEHKIVEKFIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+LIK  +TD+ +  +K+ P V+ FLG G  P  +++ E+ +I+  +E      V    F
Sbjct: 63  YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           ++G RV ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 DIGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|58584909|ref|YP_198482.1| transcription antiterminator [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419225|gb|AAW71240.1| Transcription antiterminator [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 278

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SN E+K  + +     R G++    E+ IP E +  V  + +K    R+ FP
Sbjct: 100 KWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMRRKCFP 159

Query: 63  GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + + + PK   V GFL  G  P  ++D EI  + N +  A +    
Sbjct: 160 GYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKKL 219

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           S  +E GE+V ++DG F +F G V  +++EK  +++EV I G+ T +EL   QVEKI
Sbjct: 220 SHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQVEKI 276


>gi|238927916|ref|ZP_04659676.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC
           43531]
 gi|238884249|gb|EEQ47887.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC
           43531]
          Length = 183

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 90/172 (52%), Gaps = 6/172 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++  YS  E K   ++   +  + +  ++ ++ +P E  + V+ G++    R+ FPGY
Sbjct: 18  WYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKVFPGY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           VL+  ++ +  ++ +++T  V GF+G+ ++P P+T  E E I++   +    P       
Sbjct: 78  VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGAEPKRRTKVN 135

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+ V ++ G F  + G + ++D     V V+V   G+   VE+   QVE I
Sbjct: 136 VGDTVRITSGAFEDYAGKITSIDMSSMGVKVDVD--GKSLDVEID--QVELI 183


>gi|197294704|ref|YP_001799245.1| Transcription antitermination protein [Candidatus Phytoplasma
           australiense]
 gi|171854031|emb|CAM12004.1| Transcription antitermination protein [Candidatus Phytoplasma
           australiense]
          Length = 204

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 1/174 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62
           RWYI Q Y   E    + +  R+   G+  L++ +  P E     R   +K + ER  +P
Sbjct: 30  RWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSKERNLYP 89

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+ ++TD  +  +K+TP++ GFLG+    S       + I   +         +  
Sbjct: 90  GYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKMGIMSKPNYD 149

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +G++V +  G  A+    V  +D ++ ++ VEV +FGR  PVE++++  ++I
Sbjct: 150 HLIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDFKEI 203


>gi|219684566|ref|ZP_03539509.1| transcription termination/antitermination factor NusG [Borrelia
           garinii PBr]
 gi|219671928|gb|EED28982.1| transcription termination/antitermination factor NusG [Borrelia
           garinii PBr]
          Length = 184

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   +S      +V ++  P E+V  ++ G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIKNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|289566015|ref|ZP_06446453.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium D344SRF]
 gi|289162213|gb|EFD10075.1| transcription termination/antitermination factor NusG [Enterococcus
           faecium D344SRF]
          Length = 156

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 5/153 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++  YS  E K   +I  R     +   +  + +P E+   V+ G++     + F
Sbjct: 5   EKNWYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTF 64

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           PGYVL++ +MTD  ++ +++TP V GF+G+   G  P+P+   E+ HI+  +  ++++  
Sbjct: 65  PGYVLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQND 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
             V  EVGE V + +G FA   G V  VD EK 
Sbjct: 125 LEV--EVGEVVKIIEGAFAGLEGQVTEVDGEKE 155


>gi|325926955|ref|ZP_08188233.1| transcription antitermination protein nusG [Xanthomonas perforans
           91-118]
 gi|325542667|gb|EGD14131.1| transcription antitermination protein nusG [Xanthomonas perforans
           91-118]
          Length = 156

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 102/155 (65%), Gaps = 10/155 (6%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV---------MTDKVYHTIKD 81
           ++    ++ +P+E V+ +R G+K  SER+FFPGYVL++           + ++ +H +K+
Sbjct: 1   MEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEGGIPRIDNESWHLVKE 60

Query: 82  TPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFN 140
           T KV+GF+G   + P P+ D E + I+ +V+  V++P   V FE G+ V V++GPF  FN
Sbjct: 61  TSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTEGPFNDFN 120

Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           G+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK
Sbjct: 121 GVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 155


>gi|219685431|ref|ZP_03540249.1| transcription termination/antitermination factor NusG [Borrelia
           garinii Far04]
 gi|219672987|gb|EED30008.1| transcription termination/antitermination factor NusG [Borrelia
           garinii Far04]
          Length = 184

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   +S      +V ++  P E+V  ++ G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|32475090|ref|NP_868084.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1]
 gi|32445630|emb|CAD75636.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1]
 gi|327542511|gb|EGF28986.1| transcription antitermination protein NusG [Rhodopirellula baltica
           WH47]
          Length = 225

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 4/178 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61
             WYI++V  N E    E++  ++    +     +I +PSE V +  R G++  S+R+  
Sbjct: 48  MDWYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLL 107

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-- 119
           PGY+++   + D  +  +++   +  F G+   P P+   ++E  +N+     +      
Sbjct: 108 PGYIMVYMSINDDTWFLVREVGGISDFTGSAGKPQPMEPEDVERFINRPAVDDEDETPIK 167

Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            ++ F+VG+RV V +G F +  G V  VDE   RV V + IFGR  P+EL + QVE +
Sbjct: 168 TAIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVEPL 225


>gi|187918260|ref|YP_001883823.1| transcription antitermination protein NusG [Borrelia hermsii DAH]
 gi|119861108|gb|AAX16903.1| transcription antitermination protein NusG [Borrelia hermsii DAH]
          Length = 184

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++Q +S  EKK  + I   +S       V ++  P ERV  ++ G+K   ER+ 
Sbjct: 1   MSRAWYVLQTFSQYEKKIEQEIKLLISEGIFGANVLDVKAPIERVEEIKNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + ++ + +    I   P V+ F+GT   + P P++D E++ +        
Sbjct: 61  WPGYILIELDLPEQDWKSTVANIIKIPGVVNFVGTNKEQKPLPISDEEVKSVFMLAGEIK 120

Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                 +   FE GERV +  GPF SF GI+ ++D EK ++ V V IFGR TPVE+ +  
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGIIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|224534614|ref|ZP_03675188.1| transcription termination/antitermination factor NusG [Borrelia
           spielmanii A14S]
 gi|224514083|gb|EEF84403.1| transcription termination/antitermination factor NusG [Borrelia
           spielmanii A14S]
          Length = 184

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   +S      +V ++  P E++  +R G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIKLLISEGVFSGVVLDVKAPIEKIEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+L++  + +  +      I     VI F+G   G+ P P++D E++ +        
Sbjct: 61  WPGYILVELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPISDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVSVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|57238898|ref|YP_180034.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58578830|ref|YP_197042.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57160977|emb|CAH57883.1| transcription antitermination protein NusG [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417456|emb|CAI26660.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 179

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYI+QV S  E K  ++I       G+     E+ +P E V  ++  +KV  +R+ 
Sbjct: 1   MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            PGYV +   + +   + ++  PKV+ FL      P  ++DSE+E +  ++  +V    +
Sbjct: 61  SPGYVFLHMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V F++G+ V ++DG F  FNG V+ ++E+K    V V+IFGR+T +E     ++K+
Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177


>gi|15594739|ref|NP_212528.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
           B31]
 gi|195941256|ref|ZP_03086638.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
           80a]
 gi|218249824|ref|YP_002374911.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi ZS7]
 gi|223888778|ref|ZP_03623369.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 64b]
 gi|224533004|ref|ZP_03673611.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi WI91-23]
 gi|225549179|ref|ZP_03770154.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 94a]
 gi|226320543|ref|ZP_03796105.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 29805]
 gi|226321709|ref|ZP_03797235.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi Bol26]
 gi|3914176|sp|O51355|NUSG_BORBU RecName: Full=Transcription antitermination protein nusG
 gi|2688303|gb|AAC66771.1| transcription antitermination factor (nusG) [Borrelia burgdorferi
           B31]
 gi|218165012|gb|ACK75073.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi ZS7]
 gi|223885594|gb|EEF56693.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 64b]
 gi|224512064|gb|EEF82458.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi WI91-23]
 gi|225370405|gb|EEG99843.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 94a]
 gi|226232898|gb|EEH31651.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi Bol26]
 gi|226234055|gb|EEH32774.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 29805]
 gi|312149289|gb|ADQ29360.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi N40]
          Length = 184

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   ++      +V ++  P E+V  +R G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|309802977|ref|ZP_07697078.1| putative transcription termination/antitermination factor NusG
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220444|gb|EFO76755.1| putative transcription termination/antitermination factor NusG
           [Bifidobacterium dentium JCVIHMP022]
          Length = 247

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 12/177 (6%)

Query: 12  SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
               K+   ++  R++  GL+  + +I +P E V    +  K    R   PGYVLI+ + 
Sbjct: 70  PAYTKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPGYVLIRMLP 129

Query: 72  TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV------------QRPVS 119
            +     +++T  V GF+G  + P+P++  E+  +M  + A+             ++   
Sbjct: 130 DENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKPAAAKKRTL 189

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V + VG++V V+DGPF +   +V +V+    ++ V V IFGR TPVEL +NQVEK+
Sbjct: 190 EVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFNQVEKL 246


>gi|111115223|ref|YP_709841.1| transcription antitermination factor [Borrelia afzelii PKo]
 gi|110890497|gb|ABH01665.1| transcription antitermination factor [Borrelia afzelii PKo]
          Length = 184

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   +S      +V ++  P E+V  ++ G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|58616887|ref|YP_196086.1| transcription antitermination protein NUSG [Ehrlichia ruminantium
           str. Gardel]
 gi|58416499|emb|CAI27612.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium
           str. Gardel]
          Length = 179

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYI+QV S  E K  ++I       G+     E+ +P E V  ++  +KV  +R+ 
Sbjct: 1   MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            PGYV ++  + +   + ++  PKV+ FL      P  ++DSE+E +  ++  +V    +
Sbjct: 61  SPGYVFLRMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V F++G+ V ++DG F  FNG V+ ++E+K    V V+IFGR+T +E     ++K+
Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177


>gi|224532126|ref|ZP_03672758.1| transcription termination/antitermination factor NusG [Borrelia
           valaisiana VS116]
 gi|224511591|gb|EEF81997.1| transcription termination/antitermination factor NusG [Borrelia
           valaisiana VS116]
          Length = 184

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   +S      +V ++  P E+V  ++ G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGGVVLDVKAPIEKVEEIKNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIVANIIKVQGVISFVGVNKGQKPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|225552246|ref|ZP_03773186.1| transcription termination/antitermination factor NusG [Borrelia sp.
           SV1]
 gi|225371244|gb|EEH00674.1| transcription termination/antitermination factor NusG [Borrelia sp.
           SV1]
          Length = 184

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   ++      +V ++  P E+V  +R G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPVEKVEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|330837666|ref|YP_004412307.1| transcription antitermination protein nusG [Spirochaeta coccoides
           DSM 17374]
 gi|329749569|gb|AEC02925.1| transcription antitermination protein nusG [Spirochaeta coccoides
           DSM 17374]
          Length = 189

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  WY+V  YS+ E+K    +   +        + +++ +P E V+ ++ G+K   +R+
Sbjct: 1   MSKAWYVVNTYSSYEQKIERILRKMMETDPDFFAVCSDVKVPMETVMDIKDGKKREVKRK 60

Query: 60  FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113
             PGY+L++  + +  +      IK    V GF+   +   P P++  E++ I  +    
Sbjct: 61  LLPGYILVELDLPENSWKTYCSQIKRIQGVTGFVTPNDSMKPQPLSAEEVKSIFQKTGDM 120

Query: 114 VQRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                      F VGE V + +GPF SF G +  ++ +K+ + V V IFGR TPVE+ + 
Sbjct: 121 KTEKTFKPKQTFSVGEVVKIIEGPFESFTGTIDEINTQKNSLRVSVGIFGRSTPVEVGFL 180

Query: 172 QVEK 175
           QVEK
Sbjct: 181 QVEK 184


>gi|51598651|ref|YP_072839.1| transcription antitermination factor [Borrelia garinii PBi]
 gi|51573222|gb|AAU07247.1| transcription antitermination factor [Borrelia garinii PBi]
          Length = 184

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++Q YS  EKK  + I   +S      +V ++  P E+V  +R G+K   ER+ 
Sbjct: 1   MSRAWYVIQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDVVANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D ++ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYKRKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|73666797|ref|YP_302813.1| transcription antitermination protein NusG [Ehrlichia canis str.
           Jake]
 gi|72393938|gb|AAZ68215.1| transcription antitermination protein NusG [Ehrlichia canis str.
           Jake]
          Length = 181

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYI+QV S  E+K  ++I       GL     E+ IP E V  V+  +K+  +R+ 
Sbjct: 1   MKYEWYIIQVSSGSEEKVCQAILENSCVLGLGENFREVFIPYEEVTRVKHNKKILVKRKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            PGYV +   + +   + +K  P+V+ FL      P  ++DSE+E +  ++  +V    +
Sbjct: 61  SPGYVFLYMNLNENSINFVKSIPRVLNFLNNDFGVPKVISDSEMESMRKKMCQSVVDDTN 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FE+G+ V ++DG F  FNG V+ ++++K    V V+IFGR+T +E     ++K+
Sbjct: 121 VVSFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177


>gi|216264305|ref|ZP_03436297.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 156a]
 gi|221217654|ref|ZP_03589122.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 72a]
 gi|225550080|ref|ZP_03771040.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 118a]
 gi|215980778|gb|EEC21585.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 156a]
 gi|221192331|gb|EEE18550.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 72a]
 gi|225369192|gb|EEG98645.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi 118a]
 gi|312148158|gb|ADQ30817.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi JD1]
          Length = 184

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   ++      +V ++  P E+V  +R G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|216263782|ref|ZP_03435776.1| transcription termination/antitermination factor NusG [Borrelia
           afzelii ACA-1]
 gi|215979826|gb|EEC20648.1| transcription termination/antitermination factor NusG [Borrelia
           afzelii ACA-1]
          Length = 184

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   +S      +V ++  P E+V  ++ G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYGFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EKI
Sbjct: 181 IEKI 184


>gi|119953185|ref|YP_945394.1| transcription antitermination protein NusG [Borrelia turicatae
           91E135]
 gi|119861956|gb|AAX17724.1| transcription antitermination protein NusG [Borrelia turicatae
           91E135]
          Length = 184

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY++Q +S  E+K  + I   +S       V ++  P ERV  ++ G+K   ERR 
Sbjct: 1   MSRAWYVLQTFSQYERKVEQEIKLLISEGVFGSNVLDVKAPIERVEEIKNGKKRIRERRI 60

Query: 61  FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + ++ + +    I   P V+ F+GT   + P P++D E++ +        
Sbjct: 61  WPGYILIELDLPEQEWKSTVANIIKIPGVVNFVGTNKEQKPFPISDEEVKSVFMLAGEIK 120

Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                 +   FE GERV +  GPF SF G++ ++D EK ++ V V IFGR TPVE+ +  
Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEKI 176
           +EK+
Sbjct: 181 IEKV 184


>gi|289433600|ref|YP_003463472.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169844|emb|CBH26382.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 149

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G+   +  + +P E    ++ G+    +R+ FPGYVL++ VMTD  ++ +++TP V GF
Sbjct: 1   MGMSDKIFRVIVPEEEETEIKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGF 60

Query: 89  LGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
           +G+      P+P+   E + I+  +    +R  +   FE+GE V V +GPFA F+G V  
Sbjct: 61  VGSSGSGSKPTPLLPEEADRILKSMGMVEKR--AEADFEIGETVMVKEGPFADFSGKVDE 118

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +D +K +  V V +FGR TPVE+ +NQ+EKI
Sbjct: 119 MDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 149


>gi|88658378|ref|YP_507745.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599835|gb|ABD45304.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 179

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYI+QV S  E+K  ++I       GL+    E+ IP E +  V+  +KV  +R+ 
Sbjct: 1   MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            PGYV +   + +   + I+  P+V+ FL      P  ++++E+E +  ++  +V    S
Sbjct: 61  SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FE+G+ V ++DG F  FNG V+ ++++K    V V+IFGR+T +E     ++K+
Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177


>gi|259502667|ref|ZP_05745569.1| transcription antitermination protein NusG [Lactobacillus antri DSM
           16041]
 gi|259169312|gb|EEW53807.1| transcription antitermination protein NusG [Lactobacillus antri DSM
           16041]
          Length = 150

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 5/151 (3%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G+   +  + +  E V  V+ G+        FPGYVL++ VMTD+ ++  ++TP V GF
Sbjct: 1   MGMQDYIFRVVVAEETVREVKDGQAKEVTENTFPGYVLVEMVMTDQAWYIARNTPGVTGF 60

Query: 89  LG---TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
           LG    G  P+P+   E+E IM ++       VS +  + G+ V V  GPFA   G V  
Sbjct: 61  LGSHGGGSKPTPLLPDEVERIMKRMG--ADITVSDIDVKEGDTVKVIAGPFADLTGKVTE 118

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VD EK ++ V V +FGR T  EL ++QV+ +
Sbjct: 119 VDHEKQKLKVNVEMFGRETSAELGFDQVDTV 149


>gi|254994761|ref|ZP_05276951.1| transcription antitermination protein (NusG) [Anaplasma marginale
           str. Mississippi]
 gi|255002882|ref|ZP_05277846.1| transcription antitermination protein (NusG) [Anaplasma marginale
           str. Puerto Rico]
 gi|255004013|ref|ZP_05278814.1| transcription antitermination protein (NusG) [Anaplasma marginale
           str. Virginia]
          Length = 186

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYIVQV S  E+K  + I  R  + G+  + +E+ IP E V  V+  +KV   R+  P
Sbjct: 8   HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   ++D   + ++  PKV  F           P ++ E          + +    
Sbjct: 68  GYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASE 127

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FEVG+ V ++DG F  FNG V+ V+E+K    V V+IFGR+T +E   + ++K+
Sbjct: 128 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 184


>gi|227529493|ref|ZP_03959542.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC
           49540]
 gi|227350578|gb|EEJ40869.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC
           49540]
          Length = 150

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 5/151 (3%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G+   +  + +P + V  V+ G+      + FPGYVL++ VMTD+ ++  ++TP V GF
Sbjct: 1   MGMQDYIFRVVVPEDEVRQVKDGQAKEVVEKTFPGYVLVEMVMTDQAWYIARNTPGVTGF 60

Query: 89  LG---TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
           LG    G  P+P+   E++ IM ++   VQ     +   VG+ V V  GPFA   G V  
Sbjct: 61  LGSHGGGSKPTPLLPEEVDRIMKRMG--VQTVQHDIDVSVGDSVKVIAGPFADLTGKVTE 118

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VD EK ++ V V +FGR T  EL ++Q++ +
Sbjct: 119 VDHEKMKLKVNVEMFGRETSAELGFDQIDTV 149


>gi|194246777|ref|YP_002004416.1| Transcription antitermination protein NusG [Candidatus Phytoplasma
           mali]
 gi|193807134|emb|CAP18572.1| Transcription antitermination protein NusG [Candidatus Phytoplasma
           mali]
          Length = 195

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 1/176 (0%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60
             +WYI+Q YS CE     ++        +   + E+  P E    V+   K   + R  
Sbjct: 19  EAKWYILQTYSGCENSVKNNLLQVADSMNMLDSIIEVVSPKEFYTEVKNDGKKKKKERHI 78

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + GY+ IK +MT + ++ +K+ P+V GFLG+  N +         I   +        + 
Sbjct: 79  YSGYIFIKMIMTQRSFYLVKNVPRVNGFLGSLNNHTKPVPLSEREIKPILMKIGMLSKND 138

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           + +  G+ V +  G F+     V +VD ++ +V VE+ +FGR TP+E+  +Q ++I
Sbjct: 139 LNYLNGKNVEIISGSFSGQICKVLHVDNQQEKVTVEIDLFGRSTPIEIYCSQFKEI 194


>gi|56416541|ref|YP_153615.1| transcription antitermination protein [Anaplasma marginale str. St.
           Maries]
 gi|222474909|ref|YP_002563324.1| transcription antitermination protein (NusG) [Anaplasma marginale
           str. Florida]
 gi|56387773|gb|AAV86360.1| transcription antitermination protein [Anaplasma marginale str. St.
           Maries]
 gi|222419045|gb|ACM49068.1| transcription antitermination protein (NusG) [Anaplasma marginale
           str. Florida]
          Length = 188

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYIVQV S  E+K  + I  R  + G+  + +E+ IP E V  V+  +KV   R+  P
Sbjct: 10  HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   ++D   + ++  PKV  F           P ++ E          + +    
Sbjct: 70  GYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASE 129

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FEVG+ V ++DG F  FNG V+ V+E+K    V V+IFGR+T +E   + ++K+
Sbjct: 130 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 186


>gi|295425597|ref|ZP_06818284.1| transcription termination/antitermination factor NusG
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064613|gb|EFG55534.1| transcription termination/antitermination factor NusG
           [Lactobacillus amylolyticus DSM 11664]
          Length = 162

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++  YS  E K    +  R    G+   +  + +P +  V   +G+K   E + FP
Sbjct: 7   KQWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEKEKVETVRGKKQEVEEKIFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYVL++ VMTD+ +  +++TP V GF+   G G  PSP+   E+E ++NQ +   ++   
Sbjct: 67  GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLNQ-QGQPEKKKP 125

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
           +V FE+GE V +++G F    G + ++  + 
Sbjct: 126 TVNFELGEHVTITEGAFNGIVGKITDIQPDN 156


>gi|270651531|ref|ZP_06222258.1| transcription termination/antitermination factor NusG [Haemophilus
           influenzae HK1212]
 gi|270317121|gb|EFA28748.1| transcription termination/antitermination factor NusG [Haemophilus
           influenzae HK1212]
          Length = 110

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
             M D+ +H +K  P+V+GF+G   + P+P++  E + I+N++E    +P     +  GE
Sbjct: 1   MEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRNEYHPGE 60

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI
Sbjct: 61  EVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 109


>gi|330976628|gb|EGH76672.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 192

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 95/143 (66%), Gaps = 1/143 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P     FE GE V V+DGPFA
Sbjct: 61  VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHVEVVIF 160
            FNG V+ V+ EKSR+ V V+IF
Sbjct: 121 DFNGTVEEVNYEKSRIQVAVLIF 143


>gi|224533792|ref|ZP_03674380.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi CA-11.2a]
 gi|224513085|gb|EEF83448.1| transcription termination/antitermination factor NusG [Borrelia
           burgdorferi CA-11.2a]
          Length = 186

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WY+VQ YS  EKK  + I   ++      +V ++  P E+V  +R G+K   ER+ 
Sbjct: 1   MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60

Query: 61  FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114
           +PGY+LI+  + +  +      I     VI F+G   G+ P P+ D E++ +        
Sbjct: 61  WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEIK 120

Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                     FE GERV +  GPF SF G++ ++D E+ ++ V V IFGR TPVE+ +  
Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180

Query: 173 VEK 175
           +E+
Sbjct: 181 IER 183


>gi|164686515|ref|ZP_02210543.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM
           16795]
 gi|164604384|gb|EDQ97849.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM
           16795]
          Length = 179

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 95/177 (53%), Gaps = 5/177 (2%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60
             +WY+V  YS  E K   +I   +   G++  + ++ +P+E V+   + G++   +R+ 
Sbjct: 6   EAKWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKVRQRKI 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P YVLI+ ++TD+ ++ +++T  V GF+G G  P P+++ E++ +   ++   ++    
Sbjct: 66  YPSYVLIQMIITDESWYIVRNTKGVTGFVGPGSKPVPLSEEEVKSMGIDLDKIGEK---R 122

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF-GRVTPVELAYNQVEKI 176
              EVGE V V DG F   +G+VK +D +  +V + V         +EL    +E I
Sbjct: 123 TEIEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSIETI 179


>gi|68171883|ref|ZP_00545209.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67998694|gb|EAM85420.1| transcription antitermination protein NusG [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 179

 Score =  117 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYI+QV S  E+K  ++I       GL+    E+ IP E +  V+  +KV  +R+ 
Sbjct: 1   MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            PGYV +   + +   + I+  P+V+ FL      P  ++++E+E +  ++  +V    S
Sbjct: 61  SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V FE+G+ V ++DG F  FNG V+ +++++    V V+IFGR+T +E     ++K+
Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDEKIAGVSVMIFGRLTKIEFKLEHIQKV 177


>gi|227514010|ref|ZP_03944059.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC
           14931]
 gi|227087654|gb|EEI22966.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC
           14931]
          Length = 150

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G++  + ++ +P E V  V+ G+    E + FPGYVL++ VMTD+ ++  ++TP V GF
Sbjct: 1   MGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTFPGYVLVEMVMTDQAWYVARNTPGVTGF 60

Query: 89  LG---TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
           LG    G  P+P+   E++ I+ ++   V R  + +   VG+ V +  G FA  +G V  
Sbjct: 61  LGSHGGGSKPTPLLPEEVDRILVRMGQDVAR--TDINVAVGDNVKIIAGAFADLSGKVIE 118

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VD +K ++ VE+ +FGR+T  EL +NQ++ +
Sbjct: 119 VDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 149


>gi|269959044|ref|YP_003328833.1| transcription antitermination protein [Anaplasma centrale str.
           Israel]
 gi|269848875|gb|ACZ49519.1| transcription antitermination protein [Anaplasma centrale str.
           Israel]
          Length = 186

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYIVQV S  E+K  + I  R  + G+  + +E+ IP E V  ++  +KV   R+  P
Sbjct: 8   HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTRIKYNKKVAMRRKLSP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   ++D   + ++  PKV  F           P ++ E          +      
Sbjct: 68  GYVFLHMKLSDDAINFVRRVPKVSNFLLDDAGVPKVIPSSEMETMRSSMCQAVSSGTSSE 127

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FEVG+ V ++DG F  FNG V+ V+E+K    + V+IFGR+T +E   + ++K+
Sbjct: 128 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGISVMIFGRLTKIEFKLSSIQKV 184


>gi|88607731|ref|YP_505588.1| transcription termination/antitermination factor NusG [Anaplasma
           phagocytophilum HZ]
 gi|88598794|gb|ABD44264.1| transcription termination/antitermination factor NusG [Anaplasma
           phagocytophilum HZ]
          Length = 186

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYI+QV S  E+K  + I  R  + G+  +  E+ IP E V  ++  +KV  +++  P
Sbjct: 8   HEWYIIQVSSGNEEKISQMILERSMQLGMSDMFREVFIPYEEVTKIKYNKKVQIKKKLSP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D   + ++  PKV  F           P+ + E          A      
Sbjct: 68  GYVFLYMKLCDDSVNFVRKIPKVSNFLLDDFGVPKVIPLAEMEAMRSRMCQGVASDVGDD 127

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              FEVG+ V ++DG F  FNG ++ V+EEK    V V+IFGR+T +E  ++ ++K+
Sbjct: 128 ICGFEVGDEVVINDGLFQDFNGKIEYVNEEKKVAGVSVMIFGRLTKIEFKFSSIQKV 184


>gi|290954462|ref|ZP_06559083.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312067|ref|ZP_06802880.1| transcription antitermination protein nusG [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 126

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--A 112
            SER++FPGYVLI+A ++   ++ +K  P+V+  +G+   P P++ +E++ I+  VE   
Sbjct: 2   KSERKYFPGYVLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSK 61

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           +   P     + VGE V V +GPF  F G+++ V+ EKSR+ V V IFGR TPVEL ++Q
Sbjct: 62  STVEPRLRKSYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQ 121

Query: 173 VEK 175
           VEK
Sbjct: 122 VEK 124


>gi|215425876|ref|ZP_03423795.1| transcription antitermination protein NusG [Mycobacterium
           tuberculosis T92]
 gi|289749142|ref|ZP_06508520.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T92]
 gi|289689729|gb|EFD57158.1| transcription antitermination protein nusG [Mycobacterium
           tuberculosis T92]
          Length = 205

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y+  E K   ++  R+    +   + ++ +P+E V  ++ G++    R+  PGY
Sbjct: 49  WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107
           +L++  +TD  +  +++TP V GF+G    PS +   ++   +                 
Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168

Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
                  ++RPV  V +EVGE V V DGPFA+    +
Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATI 205


>gi|15606944|ref|NP_214326.1| transcription antitermination protein NusG [Aquifex aeolicus VF5]
 gi|14423773|sp|O67757|NUSG_AQUAE RecName: Full=Transcription antitermination protein nusG
 gi|28373569|pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 gi|28373570|pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 gi|28373571|pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 gi|28373572|pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 gi|28373573|pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group I222
 gi|29726735|pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 gi|29726736|pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 gi|29726737|pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 gi|29726738|pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 gi|29726739|pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
 gi|2984191|gb|AAC07722.1| transcription antitermination protein NusG [Aquifex aeolicus VF5]
          Length = 248

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 2/135 (1%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  +   K+  + + FPGY+LIKA M DK+   I+ TP V   +  G  P P+ + 
Sbjct: 116 KITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEE 175

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           E+++I+NQ++  V+   S V FE G++V V +GPF +F G V+ V  EK ++ V + IFG
Sbjct: 176 EVQNILNQIKRGVK--PSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFG 233

Query: 162 RVTPVELAYNQVEKI 176
           R+TPVEL ++QVEKI
Sbjct: 234 RMTPVELDFDQVEKI 248



 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
            +WY +QV    E +A E++   L   GL  LV E+ +P+E  V +R  
Sbjct: 10 EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQ 59


>gi|166154530|ref|YP_001654648.1| transcription antitermination protein NusG [Chlamydia trachomatis
           434/Bu]
 gi|166155405|ref|YP_001653660.1| transcription antitermination protein NusG [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335790|ref|ZP_07224034.1| transcription antitermination protein NusG [Chlamydia trachomatis
           L2tet1]
 gi|165930518|emb|CAP04012.1| transcription antitermination protein [Chlamydia trachomatis
           434/Bu]
 gi|165931393|emb|CAP06966.1| transcription antitermination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 182

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +S+      SG+   + +I +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  V+ FLG G  P  +++ EI++I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEIKNILADLEEKKSGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
           EVG +V ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176


>gi|255311121|ref|ZP_05353691.1| transcription antitermination protein NusG [Chlamydia trachomatis
           6276]
 gi|255317422|ref|ZP_05358668.1| transcription antitermination protein NusG [Chlamydia trachomatis
           6276s]
          Length = 182

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +S+      SG+   + +I +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKHIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  V+ FLG G  P  +++ E+++I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
           EVG +V ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176


>gi|15605041|ref|NP_219825.1| transcription antitermination protein NusG [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789042|ref|YP_328128.1| transcription antitermination protein NusG [Chlamydia trachomatis
           A/HAR-13]
 gi|237804665|ref|YP_002888819.1| transcription antitermination protein NusG [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348680|ref|ZP_05380687.1| transcription antitermination protein NusG [Chlamydia trachomatis
           70]
 gi|255503220|ref|ZP_05381610.1| transcription antitermination protein NusG [Chlamydia trachomatis
           70s]
 gi|255506898|ref|ZP_05382537.1| transcription antitermination protein NusG [Chlamydia trachomatis
           D(s)2923]
 gi|18202223|sp|O84322|NUSG_CHLTR RecName: Full=Transcription antitermination protein nusG
 gi|3328738|gb|AAC67913.1| Transcriptional termination protein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167572|gb|AAX50580.1| NusG [Chlamydia trachomatis A/HAR-13]
 gi|231272965|emb|CAX09876.1| transcription antitermination protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|296435836|gb|ADH18010.1| transcription antitermination protein NusG [Chlamydia trachomatis
           G/9768]
 gi|296436761|gb|ADH18931.1| transcription antitermination protein NusG [Chlamydia trachomatis
           G/11222]
 gi|296437696|gb|ADH19857.1| transcription antitermination protein NusG [Chlamydia trachomatis
           G/11074]
 gi|297140195|gb|ADH96953.1| transcription antitermination protein NusG [Chlamydia trachomatis
           G/9301]
 gi|297748449|gb|ADI50995.1| NusG [Chlamydia trachomatis D-EC]
 gi|297749329|gb|ADI52007.1| NusG [Chlamydia trachomatis D-LC]
          Length = 182

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +S+      SG+   + +I +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  V+ FLG G  P  +++ E+++I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
           EVG +V ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176


>gi|289525359|emb|CBJ14835.1| transcription antitermination protein [Chlamydia trachomatis
           Sweden2]
 gi|296434909|gb|ADH17087.1| transcription antitermination protein NusG [Chlamydia trachomatis
           E/150]
 gi|296438629|gb|ADH20782.1| transcription antitermination protein NusG [Chlamydia trachomatis
           E/11023]
          Length = 182

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +S+      SG+   + +I +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  V+ FLG G  P  +++ E+++I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGIVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177
           EVG +V ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++V
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176


>gi|222834348|gb|EEE72825.1| predicted protein [Populus trichocarpa]
          Length = 109

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
             MTD+ +H +K+T KV GF+G     PSP++  E++ IM Q++  V++P     FEVGE
Sbjct: 1   MEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTLFEVGE 60

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V V DGPF  FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+
Sbjct: 61  MVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 109


>gi|15835211|ref|NP_296970.1| transcription antitermination protein NusG [Chlamydia muridarum
           Nigg]
 gi|270285383|ref|ZP_06194777.1| transcription antitermination protein [Chlamydia muridarum Nigg]
 gi|270289396|ref|ZP_06195698.1| transcription antitermination protein [Chlamydia muridarum Weiss]
 gi|301336780|ref|ZP_07224982.1| transcription antitermination protein NusG [Chlamydia muridarum
           MopnTet14]
 gi|18203363|sp|Q9PK75|NUSG_CHLMU RecName: Full=Transcription antitermination protein nusG
 gi|7190632|gb|AAF39426.1| transcription antitermination protein NusG [Chlamydia muridarum
           Nigg]
          Length = 182

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQV++  EKK  +S+      SG+   + +I +PSE V+ V+KG     E+  +PG
Sbjct: 3   KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+L+K  +TD+ +  +K T  V+ FLG G  P  +++ E+++I+  +E      V    F
Sbjct: 63  YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
           EVG +V ++DG F +F G+V  V  +K R+ V V IFGR T V +L + QVE++
Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175


>gi|319777680|ref|YP_004137331.1| transcription antitermination protein nusg [Mycoplasma fermentans
           M64]
 gi|318038755|gb|ADV34954.1| Transcription antitermination protein nusG [Mycoplasma fermentans
           M64]
          Length = 201

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 1   MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--------------ITIPSER 44
           M    +WY++   S  E K VE++  R+    ++                      P E 
Sbjct: 1   MDKNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKEL 60

Query: 45  VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
                           + GY+ I   MTD+ +  +++T  V G +G+    +  T     
Sbjct: 61  EKQKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQH 120

Query: 105 HIMN------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            I        +++    + V+   F++GE V + DGPF    G V    E   +V VE+ 
Sbjct: 121 QIDKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIE 180

Query: 159 IFGRVTPVELAYNQVE 174
             G+ TP +  Y +++
Sbjct: 181 YLGKKTPADFEYKEIK 196


>gi|238810255|dbj|BAH70045.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 205

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 1   MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--------------ITIPSER 44
           M    +WY++   S  E K VE++  R+    ++                      P E 
Sbjct: 5   MDKNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKEL 64

Query: 45  VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
                           + GY+ I   MTD+ +  +++T  V G +G+    +  T     
Sbjct: 65  EKQKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQH 124

Query: 105 HIMN------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            I        +++    + V+   F++GE V + DGPF    G V    E   +V VE+ 
Sbjct: 125 QIDKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIE 184

Query: 159 IFGRVTPVELAYNQVE 174
             G+ TP +  Y +++
Sbjct: 185 YLGKKTPADFEYKEIK 200


>gi|302062645|ref|ZP_07254186.1| transcription antitermination protein NusG [Pseudomonas syringae
           pv. tomato K40]
          Length = 141

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/138 (44%), Positives = 91/138 (65%), Gaps = 1/138 (0%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
           + S+  R+  +G++    EI +P+E VV +R G+K  SER+FFPGYVL++  M +  +H 
Sbjct: 1   MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60

Query: 79  IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
           +KDTP+V+GF+G   + P+P+TD E E I+ +V     +P     FE GE V V+DGPFA
Sbjct: 61  VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120

Query: 138 SFNGIVKNVDEEKSRVHV 155
            FNG V+ V+ EKSR+ V
Sbjct: 121 DFNGTVEEVNYEKSRIQV 138


>gi|269123300|ref|YP_003305877.1| NusG antitermination factor [Streptobacillus moniliformis DSM
           12112]
 gi|268314626|gb|ACZ01000.1| NusG antitermination factor [Streptobacillus moniliformis DSM
           12112]
          Length = 190

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 19/186 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WYI+  YS  EKK    +  R+    L+  V  I +P E++   +KG+ V   R+ FP
Sbjct: 10  KKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFP 69

Query: 63  GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
            YVL++               +  + ++ I++T  V GF+G G +P P+ + E+E I ++
Sbjct: 70  SYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSDPLPMDEKEVEEIFSK 129

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +    +     + +EVG+ V   DG      G V+++D    ++ + + +  R T + L 
Sbjct: 130 MSN--EDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTLG 183

Query: 170 YNQVEK 175
            N+V K
Sbjct: 184 LNEVTK 189


>gi|304316482|ref|YP_003851627.1| NusG antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777984|gb|ADL68543.1| NusG antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 187

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++   +  E K    I   L  S L+     + IP   ++  +  ++V   +  FPG
Sbjct: 6   KWYVIYTRTGDELKVKRLIE--LLFSKLNKKPIRVLIPKRAIIERKGKKRVEKIKFLFPG 63

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV IK  M  ++Y+ I   P  + FL     P+ V D EI  I++ V         S   
Sbjct: 64  YVFIKTNMCFEIYYEISKLPHFLKFLKDEMEPAEVRDDEIRIILSLVGD-SDIVGFSTGI 122

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++G +V + DGP   F G+++ +D+ K RV V + + G    V+L  + VEKI
Sbjct: 123 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEKI 175


>gi|289548403|ref|YP_003473391.1| NusG antitermination factor [Thermocrinis albus DSM 14484]
 gi|289182020|gb|ADC89264.1| NusG antitermination factor [Thermocrinis albus DSM 14484]
          Length = 242

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  +   K+  E + FPGY+LIKA M D +   I+ TP +   + TG   +P+ + 
Sbjct: 110 KITCKENKTEAKIILESKMFPGYLLIKADMDDSLLRAIEKTPHIYRPVLTGGRVAPLDER 169

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           E+E I+  V+  V+   S V FE G++V V +GPF +F G V  V  E+ +V V + IFG
Sbjct: 170 EVERIIAFVKKGVR--PSKVLFEKGDQVRVIEGPFMNFTGTVDEVHPEREKVVVLISIFG 227

Query: 162 RVTPVELAYNQVEKI 176
           R+TPVEL ++Q+EK+
Sbjct: 228 RLTPVELDFSQIEKL 242



 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
            RWY +QV +  E  A E++   L   GL   V E+ +P+E  V ++  
Sbjct: 4  EYRWYALQVEAGKEATARENLLKVLEIEGLQDKVQEVVVPAEEKVVIKTM 53


>gi|188996251|ref|YP_001930502.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931318|gb|ACD65948.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 265

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  R   ++  E + FPGY+LIKA ++D +   +K TP +IGF+  G  P P+ ++
Sbjct: 132 KITCKENRTEARIVLENKIFPGYILIKAKLSDDLIDLVKKTPFLIGFVSAGGKPVPLNEN 191

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           ++  ++ Q++    +    + +  G+ V V +GPF +F G V+ V  +K ++   + IFG
Sbjct: 192 DVMKVLGQIQKGTPK-AKKLLYTKGDIVRVIEGPFMNFTGTVEEVFPDKEKLIALITIFG 250

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEKI
Sbjct: 251 RATPVELEFSQVEKI 265



 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
            +WY +   SN E +A E+    L  + L+HLV E+ +P+E  V ++  
Sbjct: 25 EKKWYALYTQSNLEIRAKENFVKNLKLNNLEHLVDEVIVPAEEKVVLKSQ 74


>gi|237756125|ref|ZP_04584698.1| transcription termination/antitermination factor NusG
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691710|gb|EEP60745.1| transcription termination/antitermination factor NusG
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 265

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  R   ++  E + FPGY+LIKA +TD +   +K TP +IGF+  G  P P+ ++
Sbjct: 132 KITCKENRTEARIVLENKIFPGYILIKAKLTDDLIDLVKKTPFLIGFVSAGGKPVPLNEN 191

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           ++  ++ Q++    +    + +  G+ + V +GPF +F G V+ V  +K ++   + IFG
Sbjct: 192 DVMKVLGQIQKGAPK-AKKLLYTKGDIIRVIEGPFMNFTGTVEEVFPDKEKLIALITIFG 250

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEKI
Sbjct: 251 RATPVELEFSQVEKI 265



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
            +WY +   SN E +A E+    L  + L+HLV E+ +P+E  V ++  
Sbjct: 25 EKKWYALYTQSNLEIRAKENFIKNLKLNNLEHLVDEVIVPAEEKVVLKSQ 74


>gi|163784527|ref|ZP_02179388.1| transcription antitermination protein NusG [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880203|gb|EDP73846.1| transcription antitermination protein NusG [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 259

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
             +    +   K+  E + FPGY+LIKA +TD++   IK TP +IGF+  G  P P+T+ 
Sbjct: 126 KIQCKENKTEAKIVLENKIFPGYLLIKAKLTDELIDLIKKTPYIIGFVSAGGVPVPLTEE 185

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           E++ ++ Q++    +    + F  G++V V +GPF +F G+V+ V  EK ++ V + IFG
Sbjct: 186 EVKRVLGQIQKGAPKVK-KLLFATGDKVRVIEGPFMNFTGVVEKVIPEKEKLIVSISIFG 244

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEKI
Sbjct: 245 RSTPVELEFSQVEKI 259



 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
            +WY +   SN E +A E++  +L  + +  LV E+ +P+E  V ++
Sbjct: 19 EKKWYALYTQSNLEVRAKENLLKQLELNNMKDLVDEVVVPAEEKVVIK 66


>gi|50364906|ref|YP_053331.1| transcription antitermination factor [Mesoplasma florum L1]
 gi|50363462|gb|AAT75447.1| transcription antitermination factor [Mesoplasma florum L1]
          Length = 209

 Score =  107 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 90/191 (47%), Gaps = 21/191 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W++V   +  E+K +  +  ++    ++  V +I I    V++    +    E+  FPG
Sbjct: 19  QWFVVNSQTGHEEKVLNDLKNKIKAEKMEDQVFDIKISKGTVLTKTGKQ---KEKNLFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           Y+ I  +M+++ +  +++TP V GF+G+    +      ++ ++  +    +        
Sbjct: 76  YLFINMIMSEESWFVVRNTPGVTGFIGSSGRGAKPFPLTVDEVIEMLIPKTEVIVEEIET 135

Query: 116 ----------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                     +P+ +  F VG+ V V +G  A   G V ++D EK    V + +FGR T 
Sbjct: 136 VDVHNEAVAKKPLFTAPFVVGDFVRVKEGINAGEEGEVSSMDFEKGVAVVLIEMFGRYTN 195

Query: 166 VELAYNQVEKI 176
           +E+++  VE +
Sbjct: 196 LEISFENVEPV 206


>gi|296500930|ref|YP_003662630.1| transcription antitermination protein NusG [Bacillus thuringiensis
           BMB171]
 gi|296321982|gb|ADH04910.1| transcription antitermination protein NusG [Bacillus thuringiensis
           BMB171]
          Length = 149

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 91/149 (61%), Gaps = 1/149 (0%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
            G+   +  + +P E  V ++ G++   +R+ FPGYVL++ +MTD  ++ +++TP V GF
Sbjct: 1   MGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDDSWYVVRNTPGVTGF 60

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
           +G+  + S  +    E ++  ++   +   V    FE+ E V V++GPFA + G ++ +D
Sbjct: 61  VGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVVDFDFELHETVRVNEGPFADYTGAIEEID 120

Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 121 VEKKKVSVLVDMFGRETPVELDFHQIEKL 149


>gi|293363571|ref|ZP_06610327.1| NusG family protein [Mycoplasma alligatoris A21JP2]
 gi|292552920|gb|EFF41674.1| NusG family protein [Mycoplasma alligatoris A21JP2]
          Length = 198

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 20/190 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI--------------TIPSERVVSVRK 50
           WY+V   S  E K VE++  R+    ++H                     P E     + 
Sbjct: 6   WYMVSTVSGKEDKVVEALRNRIIAEQVNHSFDSTATDAGAFKVFRKPVLSPKEAEKKQKG 65

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107
                     +PGY+ IK  MTD+ +  I++T  V G +G+    +  T  + + I    
Sbjct: 66  EDYKVKWVNMYPGYIFIKMDMTDEAWFVIRNTQYVTGLIGSSGKGAKPTPVQNKEIKKSL 125

Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               +     +     V F+ GE V V DGP+    G +  +D +K    V +  FG+  
Sbjct: 126 IQEQKALDDFESGKYLVTFKDGEIVEVIDGPYQGEKGPISQIDHDKQTAVVMIESFGKQV 185

Query: 165 PVELAYNQVE 174
            VE+ Y  ++
Sbjct: 186 SVEIEYKYLK 195


>gi|225850723|ref|YP_002730957.1| transcription termination/antitermination factor NusG
           [Persephonella marina EX-H1]
 gi|225646577|gb|ACO04763.1| transcription termination/antitermination factor NusG
           [Persephonella marina EX-H1]
          Length = 264

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
             +    +   ++  E + FPGY+LIKA + D +   IK TP +IGF+  G  P P+ D 
Sbjct: 131 KIQCKENKTEARIVLENKVFPGYLLIKAELNDDLIDLIKKTPFIIGFVSAGGMPVPLKDE 190

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +IE +++Q++    +    + F+ G++V + +GPF +F G+V+ V  EK ++ V + IFG
Sbjct: 191 DIEKVLSQIQKGAPKVK-KLLFQRGDQVRIIEGPFMNFTGVVEEVIPEKEKLVVAISIFG 249

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEKI
Sbjct: 250 RSTPVELEFSQVEKI 264



 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 5  WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
          WY +   SN E +A E++   L  + + HLV E+ +P+E  V ++
Sbjct: 27 WYALYTQSNLEIRAKENLIKMLEMNNMKHLVDEVLVPAEEKVVIK 71


>gi|295105743|emb|CBL03286.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
          Length = 180

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 3/172 (1%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT---EITIPSERVVSVRKGRKVNSERRFF 61
           WY++QV S  E KA E I    +            E  +P  +V     G+     R  F
Sbjct: 2   WYVIQVLSGQEDKACELINLHAAGQRSKDNRPVLKECFVPRYQVERKFHGQYRTLTRNLF 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV+      D++   +   P     LG+ ++  P+  SE   I        +    S 
Sbjct: 62  PGYVIAVTNRVDELNDRLVKIPTFTRMLGSEKSFIPLDRSEKAFINAFTTEKHRTISLSK 121

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
               G++V V++GP  +  G +  V+  K    VEV +FGR   VE+    V
Sbjct: 122 AVYEGDKVVVTEGPMINREGWITEVNRRKGTARVEVSMFGRTINVEIGLAIV 173


>gi|54020638|ref|YP_116165.1| transcription antitermination protein NusG [Mycoplasma
           hyopneumoniae 232]
 gi|72080964|ref|YP_288022.1| transcription antitermination protein NusG [Mycoplasma
           hyopneumoniae 7448]
 gi|53987811|gb|AAV28012.1| transcription antitermination protein [Mycoplasma hyopneumoniae
           232]
 gi|71914088|gb|AAZ53999.1| transcription antitermination protein [Mycoplasma hyopneumoniae
           7448]
 gi|312601579|gb|ADQ90834.1| Transcription antitermination protein [Mycoplasma hyopneumoniae
           168]
          Length = 190

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60
           +WY++   S+ E  A+  +  R+    L+    EIT   +P       + G K    R  
Sbjct: 5   KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-------TDSEIEHIMNQVEAA 113
           + GY  IK  M DK +  +++T  V G +G+    +          +   +    Q+   
Sbjct: 65  YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
            Q    ++ +E+G+ V V+ GPF+   G +  ++E K+ + VE+  +FGR TP    Y  
Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNETKTLITVELESVFGRRTPATFEYKN 184

Query: 173 VEKI 176
           ++K+
Sbjct: 185 LKKV 188


>gi|294155399|ref|YP_003559783.1| transcription anti-termination factor NusG [Mycoplasma crocodyli
           MP145]
 gi|291599945|gb|ADE19441.1| transcription anti-termination factor NusG [Mycoplasma crocodyli
           MP145]
          Length = 198

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 21/191 (10%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITI--PSERV 45
           M    WY+V   S  E + VE++  R+    + H             + +  +  P E  
Sbjct: 1   MYKFNWYMVSTVSGKEDRVVEALKNRIIAEEVSHSFDSTATENGAFKIFKKPVLTPKEAE 60

Query: 46  VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSE 102
             ++           +PGY+ IK  MTD+ +  I++T  V G +G+      P+PV + E
Sbjct: 61  KKLKGEEYKIKWANMYPGYIFIKMDMTDEAWFVIRNTQFVTGLIGSSGKGAKPTPVPEKE 120

Query: 103 IEHIMNQVEAAVQRPV---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           I   + Q + A++        V F+  E V V DGP+    G + ++D  K    +E+  
Sbjct: 121 IRKSLIQEDKALEDYKTGKYLVEFKADEIVEVIDGPYQGEKGPILSIDHNKQTAIIELES 180

Query: 160 FGRVTPVELAY 170
           FG+  PVEL Y
Sbjct: 181 FGKKVPVELEY 191


>gi|71893985|ref|YP_279431.1| transcription antitermination protein NusG [Mycoplasma
           hyopneumoniae J]
 gi|71852112|gb|AAZ44720.1| transcription antitermination protein [Mycoplasma hyopneumoniae J]
          Length = 190

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60
           +WY++   S+ E  A+  +  R+    L+    EIT   +P       + G K    R  
Sbjct: 5   KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-------TDSEIEHIMNQVEAA 113
           + GY  IK  M DK +  +++T  V G +G+    +          +   +    Q+   
Sbjct: 65  YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
            Q    ++ +E+G+ V V+ GPF+   G +  ++  K+ + VE+  +FGR TP    Y  
Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEYKN 184

Query: 173 VEKI 176
           ++K+
Sbjct: 185 LKKV 188


>gi|288818176|ref|YP_003432524.1| transcription antitermination protein [Hydrogenobacter thermophilus
           TK-6]
 gi|288787576|dbj|BAI69323.1| transcription antitermination protein [Hydrogenobacter thermophilus
           TK-6]
 gi|308751777|gb|ADO45260.1| NusG antitermination factor [Hydrogenobacter thermophilus TK-6]
          Length = 241

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  +   K+  E + FPGY+LIKA M D +   I+ TP V   +  G    P+ + 
Sbjct: 109 KINCKENKVEAKIILESKMFPGYLLIKAEMNDALLRAIEKTPHVYKPVLVGGRVVPIDEK 168

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           E+E +++ V+  V+     V FE G++V V +GPF +F G V+ V  E+ ++ V + IFG
Sbjct: 169 EVERVISFVKKGVR--PVKVLFEKGDQVRVIEGPFMNFTGTVEEVHPEREKIVVLISIFG 226

Query: 162 RVTPVELAYNQVEKI 176
           R+TPVEL ++QVEK+
Sbjct: 227 RLTPVELDFSQVEKL 241



 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 4  RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
          +WY +QV +  E  A E++   +   GL   V ++ +P+E  V +R  
Sbjct: 5  KWYALQVEAGKEATARENLLKVIELEGLQEYVEDVVVPAEEKVVIRTQ 52


>gi|149916011|ref|ZP_01904534.1| NusG antitermination factor [Roseobacter sp. AzwK-3b]
 gi|149810085|gb|EDM69933.1| NusG antitermination factor [Roseobacter sp. AzwK-3b]
          Length = 177

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ   N  K         ++   L     +  +P + V   R G+   + +  FPG
Sbjct: 8   RWYLVQFKPNSHK---------IAARNLQRQSFQTFLPMQDVTRRRAGKFHTAPQPLFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +        +  I  T  V   +     P PV D+ +  ++ + +   +       F
Sbjct: 59  YMFVSLDTIRGPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKLLPPET-F 117

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             GE+V +  GPFASF   V+ +  ++ RV V +   G+ T +++  + +
Sbjct: 118 SPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQVDADIL 166


>gi|255022530|ref|ZP_05294516.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J1-208]
          Length = 132

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V  YS  E K   ++  R+   G+   +  + +P E    V+ G+    +R+ 
Sbjct: 1   MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGYVL++ VMTD  ++ +++TP V GF+   G+G  P+P+   E + I+  +    +R 
Sbjct: 61  FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKR- 119

Query: 118 VSSVFFEVGERVCV 131
            +   FE+GE V V
Sbjct: 120 -AEADFEIGETVMV 132


>gi|62257572|gb|AAX77724.1| unknown protein [synthetic construct]
          Length = 149

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 2/112 (1%)

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVFF 123
           LI+A ++   ++ +K  P+V+  +G+   P P++ +E++ I++ VE   +   P     +
Sbjct: 27  LIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKSY 86

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            VGE V V +GPF  F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 87  HVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 138


>gi|319790550|ref|YP_004152183.1| NusG antitermination factor [Thermovibrio ammonificans HB-1]
 gi|317115052|gb|ADU97542.1| NusG antitermination factor [Thermovibrio ammonificans HB-1]
          Length = 246

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
             +    R   K+    R +PGY+ IKA +   +   I+  P+V+GF+  G  P  V+++
Sbjct: 112 KIKCPENRVEAKIELRDRLYPGYIFIKADLDKDLQSLIRRVPRVLGFVSAGGKPVTVSEA 171

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           EI+ +  +++  V R +  + F++G++V + +GPF  F G +  +D E  ++ V V IF 
Sbjct: 172 EIQAMKERLKRGVPR-IRKLKFDIGDKVKIKEGPFIGFEGTISEIDPEHGKLIVLVNIFD 230

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEKI
Sbjct: 231 RQTPVELEFDQVEKI 245



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP 41
            +WY + V S  E +   ++   L   G++  V EI IP
Sbjct: 3  EKKWYTLHVQSGFEFRVKANLEKALKEEGVEDKVEEIFIP 42


>gi|195952631|ref|YP_002120921.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1]
 gi|195932243|gb|ACG56943.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1]
          Length = 245

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 2/135 (1%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  +   K+  + + FPGY+L+KA M D++   I+  P V   +  G   +P+ + 
Sbjct: 113 KITCKDNKTEAKIVLDNKMFPGYILLKAHMDDRLLRAIEKAPHVYKPVLVGGKIAPLKEE 172

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           E+  I+   +   +       FE GE+V + +GPF SF G ++ V+ E+ +++V + IFG
Sbjct: 173 EVNKILAHAQRGFK--TKKAVFEKGEQVRIIEGPFMSFTGTIEEVNLEREKLNVLISIFG 230

Query: 162 RVTPVELAYNQVEKI 176
           R+TPVEL ++QVEKI
Sbjct: 231 RLTPVELDFSQVEKI 245



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 1  MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49
          MT  +WY +QV +  E  A ES+   +    ++ LV +I +P+E  V ++
Sbjct: 1  MTDMKWYALQVEAGKETTAKESLMKVIELDKINDLVEDIVLPAEEKVVIK 50


>gi|239618207|ref|YP_002941529.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507038|gb|ACR80525.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1]
          Length = 354

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 5/130 (3%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
              +  R +PGY+ I+ +MTD+ ++ +K TP V+ F+  G  P  +   EI+ ++  V  
Sbjct: 225 FKITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQPIELKPKEIKALLRLVGL 284

Query: 113 AVQRPVS-----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                 +      V FEV E V ++ GPF  F G +  +D E+  V V V IFGR TPV 
Sbjct: 285 EEYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVM 344

Query: 168 LAYNQVEKIV 177
           L  +++EKIV
Sbjct: 345 LNLSEIEKIV 354



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  +WYI+Q YS  E    E++  ++   G DHL   I +P 
Sbjct: 1  MRKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPE 42


>gi|154249533|ref|YP_001410358.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1]
 gi|154153469|gb|ABS60701.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1]
          Length = 354

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 6/130 (4%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--- 109
           +   +++ +PGY+ ++ +M D  +  ++ TP V+GF+  G  P P+   E+ +I+     
Sbjct: 225 QKTKKKKLYPGYLFVEMIMNDHTWEFVRGTPFVMGFVSAGGRPLPLKPEEVHYILRMAGL 284

Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
              V+A  Q     +  + G+ V +  GPF  F+GIVK VDEEK  + V V IFGR TPV
Sbjct: 285 EETVQAKPQVAKVELEIQPGDAVKIITGPFEGFSGIVKEVDEEKQELKVNVTIFGRETPV 344

Query: 167 ELAYNQVEKI 176
            +  N+VEKI
Sbjct: 345 TVHLNEVEKI 354



 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI 40
          M   WYI+   +  E K  E++  ++   G  +LV+ + +
Sbjct: 1  MKKEWYIIHTITGYENKVKENLEAKIEAQGYRNLVSRVIV 40


>gi|225849560|ref|YP_002729725.1| transcription termination/antitermination factor NusG
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643839|gb|ACN98889.1| transcription termination/antitermination factor NusG
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 260

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
                  +   ++  E + FPGY+LIKA +TD +   +K TP +IGF+  G  P P+ + 
Sbjct: 127 KISCKENKTEARIVLENKIFPGYILIKAKLTDDLIDLVKKTPYLIGFVSAGGVPVPLDEK 186

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           ++  +++Q++    +    + F  G+ V V +GPF +F G+V  V  +K ++   + IFG
Sbjct: 187 DVAKVISQIQKGTPKVR-KLLFAKGDMVRVIEGPFMNFTGVVDEVFPDKEKLIALITIFG 245

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++QVEKI
Sbjct: 246 RATPVELEFSQVEKI 260



 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51
            +WY +   SN E KA E+    L  + LD+LV E+ +P+E  V ++  
Sbjct: 20 EKKWYALYTQSNLEIKAKENFLKNLKLNNLDYLVDEVIVPAEEKVVIKAQ 69


>gi|325833223|ref|ZP_08165729.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
 gi|325485605|gb|EGC88073.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
          Length = 212

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ  +  E      I   +     D ++ E  +P   V    +G+        FPGY
Sbjct: 44  WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 99

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +++     D++   ++  P     L       P+   E+  I    E   +    S    
Sbjct: 100 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 159

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+R+ V  GP     G ++ ++  K   ++E+ +FGR    ++    V K
Sbjct: 160 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 210


>gi|313665044|ref|YP_004046915.1| NusG family protein [Mycoplasma leachii PG50]
 gi|312949338|gb|ADR23934.1| NusG family protein [Mycoplasma leachii PG50]
          Length = 214

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 26/196 (13%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++   +  E+K +  +  ++  + ++  V  I I     VS        S +  FPG
Sbjct: 19  QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSGK---TSIKNKFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-- 121
           Y+ I  +M++K +  I++TP V GF+G+    +  +   IE  +N +   ++    +   
Sbjct: 76  YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEE 135

Query: 122 ---------------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                                 F++G+ V V  G   +  G VK++D  K    V + +F
Sbjct: 136 EKEQETKQKNEAVAKKALFTADFKIGDVVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMF 195

Query: 161 GRVTPVELAYNQVEKI 176
           GR T +E+++  VE I
Sbjct: 196 GRWTTLEVSFKNVEPI 211


>gi|85714631|ref|ZP_01045618.1| transcriptional antitermination protein, putative [Nitrobacter sp.
           Nb-311A]
 gi|85698516|gb|EAQ36386.1| transcriptional antitermination protein, putative [Nitrobacter sp.
           Nb-311A]
          Length = 170

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 11/172 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+VQ + + E KA   +              E+ +P          R   +    FP 
Sbjct: 7   QWYVVQTHPHAEGKAAAHLRR---------QGFEVYLPRYARRRRHARRVDITASPLFPR 57

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVF 122
           Y+ +   +  + +  I+ T  V   + +G+ P+PV D  +  +  + ++        +  
Sbjct: 58  YLFVAIDLVHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAPR 117

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           F  G+ V V DG F+   G+ +++  +  RV V + + GR   V +  + +E
Sbjct: 118 FSAGDTVRVVDGAFSDCLGLFESM-SDGERVLVLLDLLGRKVRVTMDIDTIE 168


>gi|85860190|ref|YP_462392.1| transcription antitermination protein [Syntrophus aciditrophicus
           SB]
 gi|85723281|gb|ABC78224.1| transcription antitermination protein [Syntrophus aciditrophicus
           SB]
          Length = 167

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 11/176 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY V   S  E K            GL        +P   V S RK R+       FP
Sbjct: 1   MSWYAVHTRSRHEDKVFT---------GLVQKSITTFLPKIEVWSKRKDRRKRIMTPLFP 51

Query: 63  GYVLIKA-VMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           GY+ +    + ++    +  T  V+  LG    +       +    + ++  +     + 
Sbjct: 52  GYLFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVEVQNL 111

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +  VGE   + DGPF    G V   D +K    V + +  R   ++L  +Q+EKI
Sbjct: 112 QYPHVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167


>gi|83319581|ref|YP_424106.1| transcription antitermination protein NusG [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|83283467|gb|ABC01399.1| transcription antitermination protein NusG [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 214

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 26/196 (13%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++   +  E+K +  +  ++  + ++  V  I I     VS        S +  FPG
Sbjct: 19  QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSGK---ASIKNKFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-- 121
           Y+ I  +M++K +  I++TP V GF+G+    +  +   IE  +N +   ++    +   
Sbjct: 76  YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEE 135

Query: 122 ---------------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                                 F++G+ V V  G   +  G VK++D  K    V + +F
Sbjct: 136 EKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMF 195

Query: 161 GRVTPVELAYNQVEKI 176
           GR T +E+++  VE I
Sbjct: 196 GRWTTLEVSFKNVEPI 211


>gi|313678177|ref|YP_004055917.1| transcription antitermination protein NusG [Mycoplasma bovis PG45]
 gi|312950368|gb|ADR24963.1| putative transcription antitermination protein NusG [Mycoplasma
           bovis PG45]
          Length = 199

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 20/190 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITIPSERVVSVRK-- 50
           WY++   S  E K VES+  R+    ++              + +  + + +    +   
Sbjct: 6   WYMISTVSGKEDKVVESLKNRIVSEQVEDCFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107
                     + GY+ I   MTDK +  +++T  V G +G+    +  T    + I    
Sbjct: 66  EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125

Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               Q+        +   F VGE V + +GPF    G V   +E   +V VEV  FG+  
Sbjct: 126 EKEKQLIEDFNSGKNIDKFTVGEIVEIIEGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185

Query: 165 PVELAYNQVE 174
           P +  Y+ VE
Sbjct: 186 PTDFDYSVVE 195


>gi|148377312|ref|YP_001256188.1| transcription antitermination protein NusG [Mycoplasma agalactiae
           PG2]
 gi|148291358|emb|CAL58741.1| Transcription antitermination protein (NusG) [Mycoplasma agalactiae
           PG2]
          Length = 199

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 20/190 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITIPSERVVSVRK-- 50
           WY++   S  E K VES+  R+    ++              +    + + +    +   
Sbjct: 6   WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107
                     + GY+ I   MTDK +  +++T  V G +G+    +  T    + I    
Sbjct: 66  EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125

Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               Q+            F VGE V + DGPF    G V   +E   +V VEV  FG+  
Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185

Query: 165 PVELAYNQVE 174
           P +  Y+ VE
Sbjct: 186 PTDFDYSVVE 195


>gi|160915636|ref|ZP_02077844.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991]
 gi|158432112|gb|EDP10401.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991]
          Length = 182

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 4/173 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+VQV S  EK+  E     +S      ++TE  IP         G   + +   F 
Sbjct: 13  MNWYVVQVRSGHEKQIAEKCRTMISN----DILTECFIPEYIHKRKFSGVWHDVKDVLFK 68

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV +     D +Y  +K  P  +  +G  +      D +    M            S+ 
Sbjct: 69  GYVFMITDKIDLLYSELKKIPDFVKVIGKKQAEIYPLDEDEIAFMKSFGKKGHIVDMSIG 128

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  G+++ +++GP     G++  +D  K   ++ + +F + T  ++    + K
Sbjct: 129 FIRGDKIYITEGPLQGKEGLIVKIDRHKRIAYLRLSMFNKETTTKVGLEIISK 181


>gi|331703848|ref|YP_004400535.1| transcription antitermination protein NusG [Mycoplasma mycoides
           subsp. capri LC str. 95010]
 gi|256383992|gb|ACU78562.1| transcription antitermination protein nusg [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384824|gb|ACU79393.1| transcription antitermination protein nusg [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455387|gb|ADH21622.1| transcription antitermination protein nusG [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
 gi|328802403|emb|CBW54558.1| Transcription antitermination protein NusG [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 213

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 25/195 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++   +  E+K +  +  ++  + ++  V  I I    +VS       +S +  FPG
Sbjct: 19  QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSGK---SSIKNKFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---------- 113
           Y+ I  +M++K +  I++TP V GF+G+    +  +    E  +N +             
Sbjct: 76  YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNMLVPNLEEIEQAHEQ 135

Query: 114 ------------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                        ++ + +  F+VG+ V V  G   +  G VK++D  K    V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195

Query: 162 RVTPVELAYNQVEKI 176
           R T +E+++  VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210


>gi|206895164|ref|YP_002247282.1| transcription antitermination factor [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737781|gb|ACI16859.1| transcription antitermination factor [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 182

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 14/183 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRF 60
            +WYIV      E    E+I  R   +G +  ++++ +P E  +  R  +      +R  
Sbjct: 2   KKWYIVTTVHGKESAVAEAIKLRAENAG-NTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60

Query: 61  FPGYVLIKAV-------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112
           +PGYV ++         +  + +  I+ TP V GF+ T    P PV D+E+E ++ +   
Sbjct: 61  YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQKSR- 119

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             ++    V  + G+ V V DG      G+V +VD EK +V V++ +FGR    +L   Q
Sbjct: 120 --EQEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQ 177

Query: 173 VEK 175
           V K
Sbjct: 178 VRK 180


>gi|291319980|ref|YP_003515238.1| transcription antitermination protein NusG [Mycoplasma agalactiae]
 gi|290752309|emb|CBH40280.1| Transcription antitermination protein (NusG) [Mycoplasma
           agalactiae]
          Length = 199

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 20/190 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITIPSERVVSVRK-- 50
           WY++   S  E K VES+  R+    ++              + +  + + +    +   
Sbjct: 6   WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107
                     + GY+ I   MTDK +  +++T  V G +G+    +  T    + I    
Sbjct: 66  EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125

Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               Q+            F VGE V + DGPF    G V   +E   +V VEV  FG+  
Sbjct: 126 EKEKQLIEDFNSGKIIDKFTVGEIVEIIDGPFKGTLGKVLEANESIHKVTVEVEHFGKKV 185

Query: 165 PVELAYNQVE 174
           P +  Y+ VE
Sbjct: 186 PTDFDYSVVE 195


>gi|83950151|ref|ZP_00958884.1| transcriptional antitermination protein, putative [Roseovarius
           nubinhibens ISM]
 gi|83838050|gb|EAP77346.1| transcriptional antitermination protein, putative [Roseovarius
           nubinhibens ISM]
          Length = 169

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W++ QV  NC           ++   L     +  +P E     R G+ V + R  FP
Sbjct: 7   KNWFLAQVKPNCAN---------IADKNLKRQGFKTFLPLEEETRQRNGKFVTAMRPLFP 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ +        + T+  T  +   +  G  P+ V    + ++M +   A  + + +  
Sbjct: 58  GYIFVAFDAARGFWRTVNSTYGITRLVSFGNEPTAVPLDLVSYLMQRC-DAEGKLLPATH 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              G++V ++ GPFA+F   V+ +  ++ RV V + I G  T V +  +Q+  +
Sbjct: 117 LSSGDKVTLTTGPFANFVAEVEKIAPDR-RVWVLMDIMGGQTRVAVGADQLRAV 169


>gi|20808504|ref|NP_623675.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
 gi|20517125|gb|AAM25279.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
          Length = 179

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V  Y N EK+  E I         D L+ +  +P ++    R+G+    E + FPGY
Sbjct: 16  WYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFPGY 75

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +KAVMT +V   I+    V  F+G G  P P+T  E++    Q          S  F+
Sbjct: 76  VFVKAVMTPEVMAAIRRINGVAHFVGGGNEPVPITPEEVKRARIQ-------DDLSEEFK 128

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V ++DGPF +F G +  +  E  ++++ + +F R   ++ +  Q+ KI
Sbjct: 129 AGDTVMITDGPFENFIGKIIKI--EGRKINIALSLFDREMGIDFSPEQIMKI 178


>gi|150020536|ref|YP_001305890.1| NusG antitermination factor [Thermosipho melanesiensis BI429]
 gi|149793057|gb|ABR30505.1| NusG antitermination factor [Thermosipho melanesiensis BI429]
          Length = 356

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---- 108
           +    R+ FPGY+ ++ +M D+ +H ++  P +I F+ +G  P P+ D E + ++     
Sbjct: 225 QKVKVRKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPLPLNDKEAKVLLRLSGE 284

Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                E   +       FE+G+ V +  GPF  F G VK ++ E + + V V IFGR TP
Sbjct: 285 EEIPKEEKSKEVKIEFDFEIGDSVKIISGPFEGFVGTVKEINPEHNELKVTVTIFGRETP 344

Query: 166 VELAYNQVEKIV 177
           V +  ++VEK+V
Sbjct: 345 VTVHTSEVEKVV 356



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  RWYI+Q  +  E  A  ++  ++   GL+H+++ + +P 
Sbjct: 1  MKKRWYILQALAGYETAAKGNLEAKIKAQGLEHVISRVLLPE 42


>gi|266620791|ref|ZP_06113726.1| putative transcription antiterminator [Clostridium hathewayi DSM
           13479]
 gi|288867577|gb|EFC99875.1| putative transcription antiterminator [Clostridium hathewayi DSM
           13479]
          Length = 168

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 5/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV +  E+         + R  ++       IP    +    G+    ++  FPGY
Sbjct: 2   WYVIQVRTGLEESIRIQCEKLIDRHAMER----CFIPYCEKMKCYYGKWHKEKQILFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + + +   + ++  +     +   LGTG N      SE E ++ Q+    Q    S    
Sbjct: 58  LFVVSQDVEALFLELNRIIGLTKLLGTG-NMIVPLTSEEESVLKQISNDDQIVTMSKGLI 116

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V  +V + +GP     G +  +D  K R  +E+ +FGR   VEL    +EK
Sbjct: 117 VNNQVIILEGPLKGREGYICKIDRHKRRARLELHMFGRKQNVELGLEILEK 167


>gi|237734430|ref|ZP_04564911.1| nusG antitermination factor [Mollicutes bacterium D7]
 gi|229382660|gb|EEO32751.1| nusG antitermination factor [Coprobacillus sp. D7]
          Length = 173

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++QV +  E+K   +    +SR     ++ E  IP    +   +G     +   
Sbjct: 1   MYENWYVIQVRTGKEEKIKNTCEKLISR----DILEECFIPKCIRLKKYQGTWKEVDEVL 56

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           F GYV + +   D++++ +K  P +   LG           E    + +          S
Sbjct: 57  FKGYVFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEEAIFLLKFGKEKHIVDLS 116

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             +  G+++ +  GP   + G++K +D  K   ++EV +F ++T V++    + K
Sbjct: 117 QGYIEGDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGK 171


>gi|257791627|ref|YP_003182233.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|257475524|gb|ACV55844.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
          Length = 170

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ  +  E      I   +     D ++ E  +P   V    +G+        FPGY
Sbjct: 2   WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +++     D++   ++  P     L       P+   E+  I    E   +    S    
Sbjct: 58  LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+R+ V  GP     G ++ ++  K   ++E+ +FGR    ++    V K
Sbjct: 118 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168


>gi|301321402|gb|ADK70045.1| NusG family protein [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 213

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++   +  E+K +  +  ++  + ++  V  I I    +VS       +S +  FPG
Sbjct: 19  QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSGK---SSIKNKFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           Y+ I  +M++K +  I++TP V GF+G+    +  +    E  +N +   ++        
Sbjct: 76  YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135

Query: 116 --------------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                         + + +  F+VG+ V V  G   +  G VK++D  K    V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195

Query: 162 RVTPVELAYNQVEKI 176
           R T +E+++  VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210


>gi|308190287|ref|YP_003923218.1| transcription antitermination factor [Mycoplasma fermentans JER]
 gi|307625029|gb|ADN69334.1| transcription antitermination factor [Mycoplasma fermentans JER]
          Length = 193

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 20/187 (10%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTE--------------ITIPSERVVSVRKGRK 53
           +   S  E K VE++  R+    ++                      P E          
Sbjct: 2   ISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKNGEEY 61

Query: 54  VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----- 108
                  + GY+ I   MTD+ +  +++T  V G +G+    +  T      I       
Sbjct: 62  KVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKSFKKE 121

Query: 109 -QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
            +++    + V+   F++GE V + DGPF    G V    E   +V VE+   G+ TP +
Sbjct: 122 IKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKKTPAD 181

Query: 168 LAYNQVE 174
             Y +++
Sbjct: 182 FEYKEIK 188


>gi|323704399|ref|ZP_08115978.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536465|gb|EGB26237.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 204

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++   +  E K    I   L    L      + IP   ++  +   +V   +  FPG
Sbjct: 23  KWYVIYTRTGDELKVKRLIE--LLFCKLKRKSIRVLIPKRAIIERKGKNRVEKIKSLFPG 80

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV IK  M+ ++Y+ IK  P+ + FL     P+ V + EI+ I++ V         S   
Sbjct: 81  YVFIKTCMSYELYNDIKRLPRFLKFLKDEAEPAEVREEEIKIILSLVGD-SDIVGFSTGI 139

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++G +V + DGP   F G+++ +D+ K RV V + + G    V+L  + VE++
Sbjct: 140 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEEL 192


>gi|42561478|ref|NP_975929.1| transcription antitermination protein NUSG [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
 gi|42492977|emb|CAE77571.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
          Length = 213

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 25/195 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+++   +  E+K +  +  ++  + ++  V  I I    +VS  +    +S +  FPG
Sbjct: 19  QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSEK---SSIKNKFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115
           Y+ I  +M++K +  I++TP V GF+G+    +  +    E  +N +   ++        
Sbjct: 76  YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135

Query: 116 --------------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                         + + +  F+VG+ V V  G   +  G VK++D  K    V + +FG
Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195

Query: 162 RVTPVELAYNQVEKI 176
           R T +E+++  VE I
Sbjct: 196 RWTTLEVSFKNVEPI 210


>gi|269115174|ref|YP_003302937.1| transcription antitermination protein [Mycoplasma hominis]
 gi|110810384|gb|AAZ52671.2| transcription antitermination protein [Mycoplasma hominis ATCC
           23114]
 gi|268322799|emb|CAX37534.1| Transcription antitermination protein [Mycoplasma hominis ATCC
           23114]
          Length = 195

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-------VSVRKGRKVNS 56
           +WY++   S  E+  +ES+  +++   +D    +I +  E            R       
Sbjct: 9   KWYMISTVSGKEENVIESLKNKIAAQRMDEYFKDIRMFKEPHLSNKELEKKQRNEEFTVK 68

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD------SEIEHIMNQV 110
               + GY+ +   MTD  ++ +++T  V G +G+  N +  T         +      +
Sbjct: 69  FVNMYKGYIFLNMAMTDDTWYLVRNTQYVTGLIGSSGNKTKPTQISDKKFQLMIDKEAML 128

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
            A  +       F+ G  V +S G F    G +   ++   +  V +  FGR  P E  Y
Sbjct: 129 LAKFKAGDIETAFKEGALVKISSGIFKDEVGEIIKNNDITQKAFVNIEQFGRKVPTEFDY 188

Query: 171 NQVE 174
             +E
Sbjct: 189 ADLE 192


>gi|239628060|ref|ZP_04671091.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518206|gb|EEQ58072.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 186

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 6/176 (3%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  RWY VQV +  E+  ++     +  S L     E  IP    +   +G     +   
Sbjct: 1   ME-RWYAVQVRTGREEAVLQLSKKMIDGSVLK----ECFIPYYERMKRYQGEWHKEQYIL 55

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+ +     D+++  +K  P +   LG G    P+ + E   I+ ++  +      S
Sbjct: 56  FPGYIFLVTEQVDELFWELKKVPGLTKILGDGMEFVPIKEEEKV-ILQKMGGSDHIAEMS 114

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + +G+ V V  GP     G +K +D  K    +E+ +FGR T V L    V K+
Sbjct: 115 KGYVIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMKL 170


>gi|325294360|ref|YP_004280874.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064808|gb|ADY72815.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 245

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 79/135 (58%), Gaps = 1/135 (0%)

Query: 42  SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101
             +    +   K+    + +PGY+ IKA +   V  TI+  P+V+GF+  G  P  V ++
Sbjct: 111 KIKCPENKVEAKIELRDKLYPGYIFIKADLDKNVQSTIRRVPRVLGFVSAGGKPVVVPEA 170

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           EI+ +  +++  V + +  + F++G++V + +GPF  F G +  +D E+ ++ V V IF 
Sbjct: 171 EIQAMRERLKKGVPK-IKKLKFDIGDKVKIKEGPFIGFEGSISEIDPEREKIIVLVNIFD 229

Query: 162 RVTPVELAYNQVEKI 176
           R TPVEL ++Q+EKI
Sbjct: 230 RQTPVELEFDQIEKI 244



 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP 41
            +WY + V S  E +   +I   L   GL++ V EI IP
Sbjct: 3  EKKWYSLHVQSGFENRVKANILKALKEEGLENKVEEIFIP 42


>gi|307544895|ref|YP_003897374.1| transcriptional antiterminator RfaH [Halomonas elongata DSM 2581]
 gi|307216919|emb|CBV42189.1| K05785 transcriptional antiterminator RfaH [Halomonas elongata DSM
           2581]
          Length = 180

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 10/173 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY++Q  S              +   L +   EI  P  RV   R+G+ V +    FP
Sbjct: 16  PRWYVIQCKSG---------ESFRAVEHLGNQGYEIFHPVLRVQKKRRGKLVWAVEPLFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I+    D  +  I+ T  V+  +  G +     D E+   + +  +      ++V+
Sbjct: 67  YYLFIRLDRLDSNWRPIRSTRGVLKIVTFGLDTPVPVDDELVASLREHGSQEAGETATVY 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  GE+V +++GPF     +      E  R  V + +  +   +E++ +Q+++
Sbjct: 127 FRAGEQVEITEGPFKDLQAVFATHKGE-ERAIVLLNMLHKRQRLEMSVSQLKR 178


>gi|148269607|ref|YP_001244067.1| NusG antitermination factor [Thermotoga petrophila RKU-1]
 gi|281411675|ref|YP_003345754.1| NusG antitermination factor [Thermotoga naphthophila RKU-10]
 gi|147735151|gb|ABQ46491.1| transcription antitermination protein nusG [Thermotoga petrophila
           RKU-1]
 gi|281372778|gb|ADA66340.1| NusG antitermination factor [Thermotoga naphthophila RKU-10]
          Length = 353

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
                R+ FPGYV ++ +M D+ Y+ ++  P V+GF+ +G  P PV D E+  I+     
Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 283

Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        + F+VG+ V +  GPF  F G++K +D E+  + V V IFGR TPV 
Sbjct: 284 EEYEEKKKPVKVEIGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343

Query: 168 LAYNQVEKI 176
           L  ++VEKI
Sbjct: 344 LHVSEVEKI 352



 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M   WYIV   S  E++  E+I  ++  +G+ +LV  I IP 
Sbjct: 1  MKKNWYIVLTMSGYEERVKENIEKKIEATGIKNLVGRIVIPE 42


>gi|193216502|ref|YP_001999744.1| transcription antitermination protein NusG [Mycoplasma arthritidis
           158L3-1]
 gi|193001825|gb|ACF07040.1| transcription antitermination protein [Mycoplasma arthritidis
           158L3-1]
          Length = 197

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 13/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-------VSVRKGRKVNS 56
           +WY++   S  E   VES+  ++S   +D    EI I               +       
Sbjct: 11  KWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKVK 70

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----- 111
               + GY+ I  +MTD+ ++ +++T  V G +G+    +  T     +    V+     
Sbjct: 71  YLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIAL 130

Query: 112 -AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                       F+ G  V ++ G F    G +   ++   +  V +  +GR  P E+ +
Sbjct: 131 AEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQYGRKVPTEIDH 190

Query: 171 NQVE 174
             +E
Sbjct: 191 ADLE 194


>gi|153208021|ref|ZP_01946555.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177']
 gi|154705911|ref|YP_001424274.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111]
 gi|165918933|ref|ZP_02219019.1| transcriptional activator RfaH [Coxiella burnetii RSA 334]
 gi|212218308|ref|YP_002305095.1| transcriptional activator [Coxiella burnetii CbuK_Q154]
 gi|120576221|gb|EAX32845.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177']
 gi|154355197|gb|ABS76659.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111]
 gi|165917403|gb|EDR36007.1| transcriptional activator RfaH [Coxiella burnetii RSA 334]
 gi|212012570|gb|ACJ19950.1| transcriptional activator [Coxiella burnetii CbuK_Q154]
          Length = 167

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E         R++   L+     I +P  +V   R G         FP Y
Sbjct: 7   WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I   +    +  I+ T  V   +  G  P+ V        +   E +   P     F+
Sbjct: 58  LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSAGVPPKVSLFQ 116

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G+RV + DG  A + G+ +     K RV + + + G+VT VE+  + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMHSGAK-RVTLLLDMVGKVTRVEVPLDSV 164


>gi|29654154|ref|NP_819846.1| transcriptional activator RfaH [Coxiella burnetii RSA 493]
 gi|29541420|gb|AAO90360.1| transcriptional activator [Coxiella burnetii RSA 493]
          Length = 167

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E         R++   L+     I +P  +V   R G         FP Y
Sbjct: 7   WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I   +    +  I+ T  V   +  G  P+ V        +   E +   P     F+
Sbjct: 58  LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSASVPPKVSLFQ 116

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G+RV + DG  A + G+ +     K RV + + + G+VT VE+  + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMHSGAK-RVTLLLDMVGKVTRVEVPLDSV 164


>gi|217076740|ref|YP_002334456.1| transcription termination/antitermination factor NusG [Thermosipho
           africanus TCF52B]
 gi|217036593|gb|ACJ75115.1| transcription termination/antitermination factor NusG [Thermosipho
           africanus TCF52B]
          Length = 354

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 7/131 (5%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---- 108
           +    R+ FPGY+ ++ +M D+ +H ++  P +I F+ +G  P P+ D E + ++     
Sbjct: 224 QKVKVRKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPIPINDKEAKVLLRLAGI 283

Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
                    +       FEVG+ V +  GPF  F G VK ++ E + + V V IFGR TP
Sbjct: 284 EEAPQVEKEKEIKIEFDFEVGDSVKIVSGPFEGFVGSVKEINPEHNELKVSVTIFGRETP 343

Query: 166 VELAYNQVEKI 176
           V +  ++VEK+
Sbjct: 344 VTVHTSEVEKV 354



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  RWYI+Q  +  E  A E++  ++   GL+H+++ + +P 
Sbjct: 1  MKKRWYILQTLAGYEATAKENLEAKIKAQGLEHVISRVLLPE 42


>gi|297520794|ref|ZP_06939180.1| transcription antitermination protein NusG [Escherichia coli OP50]
          Length = 66

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +    +P     FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL +
Sbjct: 1   QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 60

Query: 171 NQVEK 175
           +QVEK
Sbjct: 61  SQVEK 65


>gi|319936183|ref|ZP_08010603.1| NusG antitermination factor [Coprobacillus sp. 29_1]
 gi|319808757|gb|EFW05290.1| NusG antitermination factor [Coprobacillus sp. 29_1]
          Length = 170

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 4/173 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++QV S  E++  +     +S    D ++ E  IP        +G   +     F 
Sbjct: 1   MNWYVIQVRSGHEREIADKCRFLIS----DEILKECFIPEYICKKKFRGEWHDVRNVLFR 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + +   D++++ +K  P     +G  +             +            SV 
Sbjct: 57  GYVFLISDHIDELFNELKKIPDFTKVIGKKKETIYPLKDGEVEFLKTFGKDDHIVDMSVG 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  G+R+ +++GP     G++  +D  K   ++ V IF   T  ++    + K
Sbjct: 117 FIEGDRIHITEGPLQGREGLIAKIDRHKRIAYISVNIFNEETTAKVGLEIISK 169


>gi|161830667|ref|YP_001596878.1| transcriptional activator RfaH [Coxiella burnetii RSA 331]
 gi|161762534|gb|ABX78176.1| transcriptional activator RfaH [Coxiella burnetii RSA 331]
          Length = 167

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E         R++   L+     I +P  +V   R G         FP Y
Sbjct: 7   WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I   +    +  I+ T  V   +  G  P+ V        +   E +   P     F+
Sbjct: 58  LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSASVPPKVSLFQ 116

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G+RV + DG  A + G+ +     K RV + + + G+VT VE+  + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMYSGAK-RVTLLLDMVGKVTRVEVPLDSV 164


>gi|170288283|ref|YP_001738521.1| NusG antitermination factor [Thermotoga sp. RQ2]
 gi|170175786|gb|ACB08838.1| NusG antitermination factor [Thermotoga sp. RQ2]
          Length = 353

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
                R+ FPGYV ++ +M D+ Y+ ++  P V+GF+ +G  P PV D E+  I+     
Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKDREMRPILRLAGL 283

Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        + F+VG+ V +  GPF  F G++K +D E+  + V V IFGR TPV 
Sbjct: 284 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343

Query: 168 LAYNQVEKI 176
           L  ++VEKI
Sbjct: 344 LHVSEVEKI 352



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  +WYIV   S  E+K  E+I  ++  +G+ +LV  I IP 
Sbjct: 1  MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPE 42


>gi|212212718|ref|YP_002303654.1| transcriptional activator [Coxiella burnetii CbuG_Q212]
 gi|212011128|gb|ACJ18509.1| transcriptional activator [Coxiella burnetii CbuG_Q212]
          Length = 167

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E         R+S   L+     I +P  +V   R G         FP Y
Sbjct: 7   WYLIYTKPRQE---------RISEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I   +    +  I+ T  V   +  G  P+ V        +   E +   P     F+
Sbjct: 58  LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSAGVPPKVSLFQ 116

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G+RV + DG  A + G+ +     K RV + + + G+VT VE+  + V
Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMHSGAK-RVTLLLDMVGKVTRVEVPLDSV 164


>gi|257791667|ref|YP_003182273.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|317487867|ref|ZP_07946459.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
 gi|325830645|ref|ZP_08164066.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
 gi|257475564|gb|ACV55884.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|316912993|gb|EFV34510.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
 gi|325487391|gb|EGC89833.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
          Length = 170

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+ QV +  E   +E     +  S ++       +P   V+   +G     +R  FPGY
Sbjct: 2   WYVAQVQAGRESSTLEMCRRLVPPSVMED----CFMPEYEVMWKIRGEWRLVKRLLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +       + +   +   P  I  LG  EN       +                 S  + 
Sbjct: 58  LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMDGNHTVRMSEGYI 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+++ V+ GP   F G ++ +D  K R +++V +FGR  P  +    V K
Sbjct: 118 SGDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRK 168


>gi|128916|sp|P29397|NUSG_THEMA RecName: Full=Transcription antitermination protein nusG
 gi|48183|emb|CAA77858.1| NusG [Thermotoga maritima MSB8]
          Length = 353

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
                R+ FPGYV ++ +M D+ Y+ ++  P V+GF+ +G  P PV D E+  I+     
Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 283

Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        + F+VG+ V +  GPF  F G++K +D E+  + V V IFGR TPV 
Sbjct: 284 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343

Query: 168 LAYNQVEKI 176
           L  ++VEKI
Sbjct: 344 LHVSEVEKI 352



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  +WYIV   S  E+K  E+I  ++  +G+ +LV  I IP 
Sbjct: 1  MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPE 42


>gi|226941728|ref|YP_002796802.1| RfaH [Laribacter hongkongensis HLHK9]
 gi|226716655|gb|ACO75793.1| RfaH [Laribacter hongkongensis HLHK9]
          Length = 172

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 15/177 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V      E         + +   L     +  +P      +R+GR V SE   FP
Sbjct: 9   MHWYLVHTKPRQE---------QCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEEALFP 59

Query: 63  GYVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            Y+ I+  +  +DK +  I+ T  V   +  G  P+ + D  IE +         R    
Sbjct: 60  RYLFIRLGLGQSDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGH---DAARANPE 116

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
             F  GERV ++DGPFA   GI +  D E SRV V +    R     +A   + K+V
Sbjct: 117 PLFRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTRPVVARVAPGSLRKVV 172


>gi|15643219|ref|NP_228263.1| N utilization substance protein G [Thermotoga maritima MSB8]
 gi|4980959|gb|AAD35536.1|AE001723_6 N utilization substance protein G [Thermotoga maritima MSB8]
          Length = 354

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
                R+ FPGYV ++ +M D+ Y+ ++  P V+GF+ +G  P PV D E+  I+     
Sbjct: 225 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 284

Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        + F+VG+ V +  GPF  F G++K +D E+  + V V IFGR TPV 
Sbjct: 285 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 344

Query: 168 LAYNQVEKI 176
           L  ++VEKI
Sbjct: 345 LHVSEVEKI 353



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  +WYIV   S  E+K  E+I  ++  +G+ +LV  I IP 
Sbjct: 2  MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPE 43


>gi|169831854|ref|YP_001717836.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638698|gb|ACA60204.1| NusG antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 173

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 10/177 (5%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +W  V      E  A   +              E+ +P   V   R   K +     
Sbjct: 1   MALQWCAVNTKPKKEDFAARQLEA---------KGLEVFLPRISVTRKRGASKFSLWEPL 51

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
           FPGY+ +K +        +  TP V   L  G+ P PV D  I  I  +V    +  P  
Sbjct: 52  FPGYLFVKLLPEPVQVQRVNWTPGVRRLLCAGDTPVPVPDEAIALIRQRVGPGGRLTPKP 111

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              F  G RV V  GPFA   G+V+     + RV V + +  R T VE+    ++++
Sbjct: 112 QAEFPAGSRVAVRHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDRL 168


>gi|157363336|ref|YP_001470103.1| NusG antitermination factor [Thermotoga lettingae TMO]
 gi|157313940|gb|ABV33039.1| NusG antitermination factor [Thermotoga lettingae TMO]
          Length = 354

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
             +RR FPGYV ++ +M D+ +   ++ P +I F+ +G  P  +   E   I+       
Sbjct: 227 THKRRLFPGYVFVEMMMNDETWQFARNVPSIIDFVSSGGQPLEMKPREARVILRLAGLET 286

Query: 115 QRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                      + F +G+ V ++ GPF  F G+VK +D EK  + V V IFGR TPV + 
Sbjct: 287 YEEKMKPIKVELDFHIGDVVKITSGPFEDFAGVVKEIDAEKQELRVAVTIFGRETPVTVK 346

Query: 170 YNQVEKI 176
            ++VE+I
Sbjct: 347 ISEVERI 353



 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  +W+I++  +  E+ A E++  ++  +G +     I +P 
Sbjct: 1  MKKKWFILRTMAGFEQTAKENLEAKIRSTGFERYFGRILVPE 42


>gi|13477026|ref|NP_108596.1| transcription antitermination factor nusG [Mesorhizobium loti
           MAFF303099]
 gi|14027789|dbj|BAB54382.1| transcription antitermination factor; NusG [Mesorhizobium loti
           MAFF303099]
          Length = 182

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY+++V    E +A  ++   L  + ++ ++      ++R    +           F
Sbjct: 11  EARWYVLRV----EDRADIAVDKLLGEANVERVMLHTECEAKRRGRRKHQSLEPVRVPSF 66

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120
           PGY+ +K V     +  ++    V+G +G  + PSPV++ EI     ++E   +   V +
Sbjct: 67  PGYIFVKVVSCAATWAGLRTVSGVLGPIGGCDGPSPVSEQEILKFQARIENDPEAIAVLT 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G++V +  GPFA F  +V  +  +K +VHVEV IFGR TP+  A  +V K+
Sbjct: 127 NALKAGDKVSIDSGPFAGFEAVVL-MLGDKHKVHVEVDIFGRKTPIGFALAEVTKL 181


>gi|256822138|ref|YP_003146101.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069]
 gi|256795677|gb|ACV26333.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069]
          Length = 167

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY++      E +A+E +          +      +P   V  + +G++  +    F
Sbjct: 5   EKSWYLINSKPKQELRALEHLK---------NQEINCVLPVLEVERIIRGKRQKAIEPLF 55

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ ++     + +  I+ T  V  F+  G  P  V DS +EH++  +      P+ + 
Sbjct: 56  PGYLFVELQTNGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLL--ILDTSFTPIETN 113

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               G++V ++DGPF    G+ K  + EK R  V + I G+VT +EL   Q+ K
Sbjct: 114 APGAGDKVIITDGPFKDLEGVFKISNGEK-RSIVLLTILGKVTEMELENKQLRK 166


>gi|222099194|ref|YP_002533762.1| Transcription antitermination protein nusG [Thermotoga neapolitana
           DSM 4359]
 gi|221571584|gb|ACM22396.1| Transcription antitermination protein nusG [Thermotoga neapolitana
           DSM 4359]
          Length = 353

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
               +R+ FPGYV I+ +M D+ Y+ ++  P V+GF+ +G  P PV D EI  I+     
Sbjct: 224 YKTKKRKLFPGYVFIEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKDKEIRPILRLAGL 283

Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                        + F+VG+ V +  GPF  F G++K +D E+  + V V IFGR TPV 
Sbjct: 284 EEYEEKKKPVKVEMGFKVGDTVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343

Query: 168 LAYNQVEKI 176
           L  ++VEKI
Sbjct: 344 LHVSEVEKI 352



 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M   WYI+   S  E+K  E+I  ++  +G+ +LV  I IP 
Sbjct: 1  MKKNWYIIVTMSGYEEKVKENIERKIEATGIRNLVGRIVIPE 42


>gi|117621236|ref|YP_855455.1| transcriptional activator RfaH [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562643|gb|ABK39591.1| transcriptional activator RfaH [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 183

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 10/174 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+       E +A         R+ L+    E   P   +  +R+G++V      FP
Sbjct: 19  KKWYLAYCKPKEEARA---------RAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFP 69

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I   + +    T+K T  +   +  G   + ++   +  +M++ ++   R   +  
Sbjct: 70  NYLFIYVDLEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQLMSRDDSDEARASYASL 129

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              G++V +  GP A F  I    D +K R  + V +  + T          ++
Sbjct: 130 PTQGDKVLIESGPLAGFEAIYLEPDGDK-RAILLVSLLNQETSSSFDNQSFRRL 182


>gi|307297340|ref|ZP_07577146.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916600|gb|EFN46982.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 355

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%)

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
              +  R +PGYV I+ +M ++ ++ +K+TP V+ F+  G  P  + + EI+ ++  V  
Sbjct: 225 FKITRTRLYPGYVFIEMIMNEETWNLVKNTPNVVNFVSVGGQPVQLKEKEIKALLRLVGI 284

Query: 113 AVQRPVS------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                         V F+VGE V ++ GPF  F G V ++D ++  + V V IFGR TPV
Sbjct: 285 EEYEEHMGGPVKIEVEFDVGEVVRINSGPFEDFVGKVTDLDPDRQELKVVVSIFGRETPV 344

Query: 167 ELAYNQVEKIV 177
            L+ ++VEKIV
Sbjct: 345 ILSLSEVEKIV 355



 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42
          M  +W+I+Q YS  E    E+I  ++   G  H+  +I +P 
Sbjct: 1  MRKKWFIIQTYSGLENSIREAIQIKIESFGFSHMFGKILVPE 42


>gi|47458980|ref|YP_015842.1| transcription antitermination protein NusG [Mycoplasma mobile 163K]
 gi|47458308|gb|AAT27631.1| transcription antitermination factor [Mycoplasma mobile 163K]
          Length = 215

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-------VSVRKGRKVNS 56
            WY + V S  E+K +ES+  ++   G+  ++ EI I                       
Sbjct: 28  HWYTISVVSGKEEKVLESLNNKIKSLGMGEVIKEIKIFQTPYLTEKELEKKRNGENFKVK 87

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
           + + + GY+ +K +MTD V+  +++T  V G +G+    +  T          ++   ++
Sbjct: 88  QEKLYKGYIFMKMIMTDDVWFMVRNTENVTGLIGSSGKGTKPTPISERKFSKMLDFEKKK 147

Query: 117 P------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                    +  F++G    V +GPF    GI+   ++ K+   + +  FGR TPVE  +
Sbjct: 148 IEEFGSGNYNSKFKIGLVAKVLEGPFKDEEGIILENNDIKALATIAIESFGRKTPVEFEH 207

Query: 171 NQVE 174
             ++
Sbjct: 208 KNLK 211


>gi|145300265|ref|YP_001143106.1| transcriptional activator RfaH [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853037|gb|ABO91358.1| transcriptional activator RfaH [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 165

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+       E +A         R+ L+    E   P   +  +R+G++V      FP
Sbjct: 2   KKWYLAYCKPKEEARA---------RAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I   + +    T+K T  +   +  G+  + ++   +  +M++ ++   R   +  
Sbjct: 53  NYLFIYVDLEEVTPVTLKSTRGISRIIHFGKEWTAISSQLVYQLMSRDDSDEARASYANL 112

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
              G++V +  GP A F  I    D EK R  + V +  + T     
Sbjct: 113 PTQGDKVLIESGPLAGFEAIYLEPDGEK-RAILLVSLLNQETSSSFD 158


>gi|330831026|ref|YP_004393978.1| transcriptional activator RfaH [Aeromonas veronii B565]
 gi|328806162|gb|AEB51361.1| Transcriptional activator RfaH [Aeromonas veronii B565]
          Length = 166

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 10/174 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+       E +A         R+ LD    E   P   +  +R+G++V      FP
Sbjct: 2   KKWYLAYCKPKEEARA---------RAHLDAQGIESYYPMVEIEKLRRGKRVPVREPMFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I   + +    T+K T  +   +  G   +P++   +  +M++ ++   R   +  
Sbjct: 53  NYLFIFVDLEEVTPVTLKSTRGISRIIHFGSEWTPISSKLVYQLMSRDDSDEARASYASL 112

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              G++V + +GP A F  I    D EK R  + V +  R T      +   ++
Sbjct: 113 PCSGDKVLIEEGPLAGFEAIYMEPDGEK-RAILLVSLLNRETTSSFDNHTFRRL 165


>gi|257792184|ref|YP_003182790.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|257476081|gb|ACV56401.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
          Length = 172

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ     EK  ++ I   +     + L+ E  IP   V    +G          PGY
Sbjct: 4   WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 59

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +      K+   ++  PK    LG  +  +P+ D E+  I    +   +    S    
Sbjct: 60  IFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVM 119

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ + + +GP  +  G++K +D  K   ++E+ I GRV  V++    V K
Sbjct: 120 EGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170


>gi|20807217|ref|NP_622388.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
 gi|20515721|gb|AAM23992.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4]
          Length = 171

 Score = 97.0 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++   S CE+K  + I              E+ IP  +++   KG +    +  FP
Sbjct: 2   KKWYVLFTKSGCEEKVGKIIKKIWENE------IEVLIPRRKIIERIKGEEREKIKLLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV +K  MT+  YH I    K   FL   + P+ V + E+  I+N +         S  
Sbjct: 56  GYVFVKTEMTEAKYHEITSVLKQGVFLKEDKMPASVKEEEMRVILN-LTGDSDLIDVSRG 114

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            + G+RV + +GP   + G ++ VD+ K R  V   + G V  V+L    VEKIV
Sbjct: 115 VKEGDRVKIIEGPLLGYEGFIQKVDKRKKRAKVIFKVAGEVKSVDLGLEIVEKIV 169


>gi|303238542|ref|ZP_07325076.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
 gi|302593940|gb|EFL63654.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2]
          Length = 176

 Score = 97.0 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 8/176 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY + V +  E      +         +       +P  ++  VRKG+     + FFP
Sbjct: 1   MSWYALHVKTGAENDVENFL-----HYNFESNECHSIVPKRKLTEVRKGKCYEVIKIFFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVLI   M+  +Y+ I+  P V   L            E  + + ++         S  
Sbjct: 56  GYVLINLDMSTDIYYIIRKIPNVYTVLKQDGEYYSRISDEEINPLLKLLKDSDLIDYSKI 115

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA---YNQVEK 175
           F    +V V+ GP     G+++ VD+ + R  V +   G    V+L     + +EK
Sbjct: 116 FIENSKVSVNSGPLLGLEGLIRKVDKRRGRAKVALNFMGSEKTVDLGVEILSSLEK 171


>gi|121999044|ref|YP_001003831.1| NusG antitermination factor [Halorhodospira halophila SL1]
 gi|121590449|gb|ABM63029.1| transcription antitermination protein nusG [Halorhodospira
           halophila SL1]
          Length = 175

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V      E++A            LDH      +P  R    R+ R        FP Y
Sbjct: 15  WYLVYSKPRQEERA---------WWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRY 65

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I+     + +  I+ T  V G +  G  P+ V D  ++ I  ++E            +
Sbjct: 66  LFIRLAAGLEDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDGHCDLAPE-PLQ 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            GERV V DGPF S+ GI         RV + + + G+ T + ++ +Q+E+
Sbjct: 125 PGERVRVLDGPFQSYEGIF-RASRSDERVMILLDVAGQHTTLTVSQHQIER 174


>gi|46446233|ref|YP_007598.1| transcription antitermination protein NusG [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399874|emb|CAF23323.1| probable transcription antitermination factor NusG [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 124

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 2/118 (1%)

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            +PGY+LIK  ++D+ +  +K+T  VI FLG G+ P+P+TD E+  I+  +E   ++   
Sbjct: 1   MWPGYLLIKMNLSDESWQYVKNTNGVIDFLG-GDKPTPLTDFEVGEILKDLEDKKRKITQ 59

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176
              FEVG+RV ++DG F +F G V  V  +K R+ V V IFGR T V +L + QVE+I
Sbjct: 60  KHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 117


>gi|317487905|ref|ZP_07946497.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
 gi|316913031|gb|EFV34548.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
          Length = 170

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ  +  E      I   +       ++ E  +P   V    +G+        FPGY
Sbjct: 2   WYVVQTVAGREFAVCRLIESLVE----GDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +++     D++   ++  P     L       P+   E+  I    E   +    S    
Sbjct: 58  LIVVTDRVDELESQLRRVPAFARVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+R+ V  GP       ++ ++  K   ++E+ +FGR    ++    V K
Sbjct: 118 EGDRIIVLKGPLVGRESWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168


>gi|317490110|ref|ZP_07948599.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
 gi|325833656|ref|ZP_08166105.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
 gi|316910815|gb|EFV32435.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
 gi|325485580|gb|EGC88049.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
          Length = 170

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ     EK  ++ I   +     + L+ E  IP   V    +G          PGY
Sbjct: 2   WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +      K+   ++  PK    LG  +  +P+ D E+  I    +   +    S    
Sbjct: 58  IFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVM 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ + + +GP  +  G++K +D  K   ++E+ I GRV  V++    V K
Sbjct: 118 EGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 168


>gi|146280091|ref|YP_001170248.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558332|gb|ABP72943.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 174

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 11/171 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ   N           R++   L      +  P++        R  ++ ++ FPGY
Sbjct: 13  WYLVQTKPN---------AFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGY 63

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++       +  I  T  V   + T  N        +   + Q  A     +      
Sbjct: 64  LFVRFNPEFPQWRAINATYGVSRLV-TFGNIPSPVPHALIAGLRQRCANDGTLLPPEQLS 122

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +G+RV +  GPFA +   V+ ++ +K RV + + I G  T  ++    ++K
Sbjct: 123 LGDRVRIISGPFADYVATVEQIEPDK-RVWILLDILGGQTKTQIQIAALQK 172


>gi|220924919|ref|YP_002500221.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219949526|gb|ACL59918.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 230

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 21/187 (11%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGG-RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
           M   RW++V   +   ++  +++    +    L   V          V VR GR + +  
Sbjct: 54  MAAVRWHLVDCRAGKARQFADALAAGAIPALRLSEEV----------VRVRSGRPIRTRM 103

Query: 59  RFFPGYVLIKAVMTDKVYHTIKD--TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-- 114
             F   + +      +  H ++D    ++ G     E    V   E++     +   V  
Sbjct: 104 PLFGRLLFVGLDPHSEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLGGDVPP 163

Query: 115 -----QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                   ++   FE+GE V V+DGPFASF+G+V+ +D E   + V V IFGR TPV L 
Sbjct: 164 AERRTGAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLE 223

Query: 170 YNQVEKI 176
             QVEK+
Sbjct: 224 PTQVEKL 230


>gi|295789221|pdb|2KVQ|G Chain G, Solution Structure Of Nuse:nusg-Ctd Complex
          Length = 63

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 5   RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 62


>gi|160876145|ref|YP_001555461.1| transcriptional acivator RfaH [Shewanella baltica OS195]
 gi|160861667|gb|ABX50201.1| transcriptional acivator RfaH [Shewanella baltica OS195]
 gi|315268341|gb|ADT95194.1| transcriptional acivator RfaH [Shewanella baltica OS678]
          Length = 168

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++GRK       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q  ++  +
Sbjct: 53  NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEAL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++  +DGPF    GI +     K R HV   I G++  V +    VE++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPEQSVERV 166


>gi|153001420|ref|YP_001367101.1| transcriptional acivator RfaH [Shewanella baltica OS185]
 gi|217972648|ref|YP_002357399.1| transcriptional acivator RfaH [Shewanella baltica OS223]
 gi|151366038|gb|ABS09038.1| transcriptional acivator RfaH [Shewanella baltica OS185]
 gi|217497783|gb|ACK45976.1| transcriptional acivator RfaH [Shewanella baltica OS223]
          Length = 168

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++GRK       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q  ++  +
Sbjct: 53  NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKELTPSQTVLAEAL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++  +DGPF    GI +     K R HV   I G++  V +    VE+I
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPQQSVERI 166


>gi|23336710|ref|ZP_00121908.1| COG0250: Transcription antiterminator [Bifidobacterium longum
           DJO10A]
          Length = 128

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 12/127 (9%)

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV------- 114
           PGYVLI+    +     +++T  V GF+G  ++P+P++  E+  +M  + A+        
Sbjct: 1   PGYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGD 60

Query: 115 -----QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                ++    V + VG++V V+DGPFA+   +V +V+    ++ V V IFGR TPVEL 
Sbjct: 61  KPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELG 120

Query: 170 YNQVEKI 176
           ++QV+K+
Sbjct: 121 FHQVQKL 127


>gi|257456059|ref|ZP_05621262.1| transcription antitermination protein, NusG family [Treponema
           vincentii ATCC 35580]
 gi|257446517|gb|EEV21557.1| transcription antitermination protein, NusG family [Treponema
           vincentii ATCC 35580]
          Length = 186

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 5/170 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y VQV +  E      +  ++ +   ++   +   P   +   +KG +   +   FPGY+
Sbjct: 4   YAVQVKTGKEP----ELLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGYI 59

Query: 66  LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
            ++   ++  +   ++ TP    FL   +NP P+ D+++  + + +        S V+F+
Sbjct: 60  FLEIDDLSLPLCWQLRKTPNFYHFLPNNQNPLPLVDNDLSLLHHFLSFGEVTAPSKVYFD 119

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              R+CV DG      G +  VD  K R  V + ++    P++LA++ +E
Sbjct: 120 ANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIE 169


>gi|146282124|ref|YP_001172277.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501]
 gi|145570329|gb|ABP79435.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501]
          Length = 169

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 12/168 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY++Q     E +A E +              E   P +   + R G+   +    F
Sbjct: 6   TARWYLIQTKPRQEARAEEHLLR---------QHFECYRPLKASAATRSGQGAKAGEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+   T   ++ I+ T  V   +  G  P+PV D  IE +  ++    + P +  
Sbjct: 57  PGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRLAQDERAPAA-- 114

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            F+ GERV VS G F+    I  + D E  R  + + +  R   V + 
Sbjct: 115 NFKPGERVQVSGGSFSDIEAIFVSSDGE-ERSVILLNLLQREQKVRVP 161


>gi|91794023|ref|YP_563674.1| transcriptional activator RfaH [Shewanella denitrificans OS217]
 gi|91716025|gb|ABE55951.1| transcription antitermination protein nusG [Shewanella
           denitrificans OS217]
          Length = 166

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++              E  +P  +     +G+    E   FP
Sbjct: 2   KAWYLLYCKPKSELRAQQNLAL---------QQVESYLPVIKEQKTARGKTKVVEVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I    T+   +TI  T      +G  E  +P+ D+ I  I ++V          + 
Sbjct: 53  NYLFIHFDPTEFSVNTIHSTRGASRIIGCKELMTPINDAIIAEIKHRVGNHQVELQPEL- 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              G+RV    GPFA  + I +  + +K R HV   I G+   +++  +Q+
Sbjct: 112 -VKGDRVRFIQGPFADLDAIFEEHNGDK-RCHVLFTIMGQQKSLQVNLDQI 160


>gi|326392210|ref|ZP_08213671.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
 gi|325991749|gb|EGD50280.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
          Length = 102

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 6/108 (5%)

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
            VMTD  ++ +++T  V GF+G G  P P+T++E+  +       ++   ++V   V + 
Sbjct: 1   MVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDLNVKDT 54

Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V V  GPF +F G+V+ +  E+ +  V + +FGR TPVE    Q+++I
Sbjct: 55  VRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQRI 102


>gi|297184776|gb|ADI20886.1| transcription antiterminator [uncultured gamma proteobacterium
           EB080_L93H08]
          Length = 85

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 55/81 (67%)

Query: 95  PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
           PSP+ + E   I+NQ E +   P  ++ ++ GE V V DGPF  FNG+V+NV+ EK+++ 
Sbjct: 4   PSPIPEHEALRILNQAEDSKGMPRPTITYQPGEVVRVIDGPFNDFNGVVENVNYEKNKLS 63

Query: 155 VEVVIFGRVTPVELAYNQVEK 175
           V V I GR TPV+L +NQVEK
Sbjct: 64  VAVQILGRPTPVDLNFNQVEK 84


>gi|313639747|gb|EFS04501.1| transcription antitermination protein NusG [Listeria seeligeri FSL
           S4-171]
          Length = 111

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 5/113 (4%)

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           ++ VMTD  ++ +++TP V GF+G+      P+P+   E + I+  +    +R  +   F
Sbjct: 1   MEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR--AEADF 58

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           E+GE V V +GPFA F+G V  +D +K +  V V +FGR TPVE+ +NQ+EKI
Sbjct: 59  EIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 111


>gi|85712703|ref|ZP_01043748.1| Transcription antiterminator RfaH [Idiomarina baltica OS145]
 gi|85693435|gb|EAQ31388.1| Transcription antiterminator RfaH [Idiomarina baltica OS145]
          Length = 165

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++     E +A+E++                  P   V  + +G++       FPGY
Sbjct: 9   WYVLKTKPRQEDRALENLAR---------QGFNSFGPKLAVERILRGKRTVRTEPMFPGY 59

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +++      ++ ++ T  V   +  G+    +  S I+ I        +    +   E
Sbjct: 60  IFVQSDELATQFYKLRSTYGVHSVVRFGDRIPKLPQSWIDSIRGM-----EASAETQAPE 114

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG++V +++GPF  F   V  +D E SR  V +    +     ++Y++++
Sbjct: 115 VGDQVEITEGPFKGFLAKVVALDGE-SRCFVLLEWMQKEVKASMSYSELQ 163


>gi|168700805|ref|ZP_02733082.1| transcription antitermination protein NusG [Gemmata obscuriglobus
           UQM 2246]
          Length = 223

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 26/199 (13%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK------------ 50
            +WY ++V S  E     +I  +++  GL+ +  +I +P E+V+  +             
Sbjct: 24  KKWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTGEYN 83

Query: 51  --GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS------PVTDSE 102
              RKV  + + F GY+  +    D++ + I++T  V  FL     P+      P++D+E
Sbjct: 84  TVERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMSDAE 143

Query: 103 IEHIMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKS-----RVHVE 156
           ++ ++ +     + P    V FE G+RV + +G F    G VK+V   K      +V V 
Sbjct: 144 VKQMLGEKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKVIVT 203

Query: 157 VVIFGRVTPVELAYNQVEK 175
           V  +GR   VEL Y QV K
Sbjct: 204 VTFWGRPLDVELEYWQVTK 222


>gi|220926074|ref|YP_002501376.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219950681|gb|ACL61073.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 255

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 8/172 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW+++       ++A + +            +  +       +    GR+   +R     
Sbjct: 91  RWHVMVAKPRFARRAAKDLTK--------AGIPAVLTDERVELVEESGRRRIVKRPLLRR 142

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
            + +            ++T  V   +  G   +    ++      +  A          F
Sbjct: 143 VLFVGLPRCAAPEVVHRETYFVRDAVRDGCGRAIQVPADQLRRFVRALADTLTERDPNAF 202

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ + +  GPFASF+GI+++ D    R+ V V IFGR +PV L +++VE+
Sbjct: 203 EPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVER 254


>gi|258517294|ref|YP_003193516.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
 gi|257780999|gb|ACV64893.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771]
          Length = 164

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 10/173 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++   +  E+        R+     +  +    +P   +V  R+G     ER  FP
Sbjct: 1   MHWYVIHCLTGHEEDV----RSRVK----EKDIARAVVPRRLMVERRQGGWQYVERVVFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++A MT   Y+ +++ P VI  LGT   P P+  +E+   +          +S VF
Sbjct: 53  GYVFVQAHMTPAAYYAMRNLPGVIRVLGT-SRPVPLMGNEVTLFLKLCRDGDPLGLSEVF 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + G  V V  GP     G +  +D  + R  V + + G    VELA + ++K
Sbjct: 112 VK-GGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKK 163


>gi|114769689|ref|ZP_01447299.1| transcriptional antitermination protein, putative [alpha
           proteobacterium HTCC2255]
 gi|114549394|gb|EAU52276.1| transcriptional antitermination protein, putative [alpha
           proteobacterium HTCC2255]
          Length = 166

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  W+I+Q   N   +A            L     E  +P   + S +  R +N+ R  
Sbjct: 1   MSKEWFILQFKPNSHHQA---------TKNLTRQGFETFLPLTDITSRKTSRFINTTRPL 51

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+ I    T   +H I +T  V   +    N   +  + +E++M +      + +  
Sbjct: 52  FPGYMFITFDRTKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVRC-DLSSKILPV 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + G++V +  GPFA+F   V+  + +  R+ V + +  R T ++   + +E
Sbjct: 111 ENLKKGDQVKILHGPFANFIATVETYETD-QRIWVLMDLMSRKTKIQTPLDALE 163


>gi|114564008|ref|YP_751522.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400]
 gi|114335301|gb|ABI72683.1| transcription antitermination protein nusG [Shewanella
           frigidimarina NCIMB 400]
          Length = 170

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++              E  +P      + + +        FP
Sbjct: 2   KSWYLLYCKPRHEVRAQQNLAL---------QEVESYLPMITQQKMVRNKPQMVTAPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I           I +T      +G  E+ +P+ D  I  +  +V+  V  P     
Sbjct: 53  SYLFIYFDPLITSVSKIHNTRGANRIVGCREDMTPIDDRIISALKRRVQGYV--PEEVKP 110

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              G++V   DGPF     I    + +K R HV   I G+   + +    ++ +
Sbjct: 111 LGKGDKVKFVDGPFKDLEAIFDENNPDK-RCHVLFNIMGQQKRILVELTNLQAV 163


>gi|296445155|ref|ZP_06887115.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
 gi|296257329|gb|EFH04396.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
          Length = 183

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 11/168 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY+VQ     E   V           L+       +P          +    +   F
Sbjct: 20  TRRWYVVQTRPQREAGVV---------LQLEAQNFRAFLPRVTRTIRHARKLRMVQAPVF 70

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ +   +    + ++  T   +G +  G++    T   +   +     A       +
Sbjct: 71  PGYLFVSLDLQRDRWRSVNGTFGAVGLI-MGDDYPAPTPHGVVEQLLSCADARGACRFDL 129

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
               G++V V  GPFA   G +  +  +  RV V + I G   PV L 
Sbjct: 130 DLAEGQKVKVLAGPFADAIGSLVRL-GDNERVQVLLDIMGGRVPVTLE 176


>gi|313900768|ref|ZP_07834260.1| transcription termination/antitermination factor NusG [Clostridium
           sp. HGF2]
 gi|312954438|gb|EFR36114.1| transcription termination/antitermination factor NusG [Clostridium
           sp. HGF2]
          Length = 170

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 4/173 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+ QV S  E+K VE     +S+  L        IP         G   + +   F 
Sbjct: 1   MKWYVGQVRSGHERKIVEKCRTMISKDVLQD----CFIPEYIRKKKYMGNWHDVKDILFK 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ +     D++   +K  P  +  +G  +      + E    M            S  
Sbjct: 57  GYIFMITDQIDQLNIELKKIPDFVKVIGKKKADIFPLNEEEVAFMKSFGKENHVVEMSTG 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  GE++ +++GP     G +  +D  K   ++++ +F + T  ++    + K
Sbjct: 117 FIQGEQIFITEGPLQGKEGQIIRIDRHKRVAYLQLSMFNKETTTKVGLEIISK 169


>gi|77165942|ref|YP_344467.1| transcriptional activator RfaH [Nitrosococcus oceani ATCC 19707]
 gi|76884256|gb|ABA58937.1| Transcriptional activator RfaH [Nitrosococcus oceani ATCC 19707]
          Length = 174

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 2   TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           + + WY++      E         RL++  L+    E  +P  R +  R  R++ +    
Sbjct: 7   SKKFWYLIYCKPRQE---------RLAQENLERQNFETYLPLVRQMRRRAYRRIATVEPL 57

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I        + +I+ T  VI  +  G  P+ V D+ I  +     +   + ++S
Sbjct: 58  FPRYLFIHLDTEKDNWGSIRSTIGVISLVRFGAQPAHVPDTLIRELQTHEGSDGIQDLAS 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             F  G++V V +G  A   GI    +  K R H+ + I G+    E+  N ++++
Sbjct: 118 PDFRKGQQVLVEEGLLAGHEGIWLTSNG-KKRAHILLEIMGKQIKTEVNENWLKRL 172


>gi|300113352|ref|YP_003759927.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
 gi|299539289|gb|ADJ27606.1| NusG antitermination factor [Nitrosococcus watsonii C-113]
          Length = 174

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 2   TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           + + WY++      E         RL++  L+    E  +P  R +  R  R++ +    
Sbjct: 7   SKKFWYLIYCKPRQE---------RLAQENLERQSFETYLPLVRQMRRRAYRRIATVEPL 57

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +        + +I+ T  VI  +  G  P+ V D+ I  +         + ++ 
Sbjct: 58  FPRYLFVHLDAEKDDWGSIRSTIGVISLVRFGAQPAQVPDTLISELQAHDAPDGIQNLAR 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             F+ G++V V +G  A   GI    +  K R H+ + I G+    E+  N ++++
Sbjct: 118 PGFQKGQQVLVEEGLLAGHEGIWLTSNG-KERAHILLEIMGKQIKTEVNENWLKRL 172


>gi|327480363|gb|AEA83673.1| transcriptional activator RfaH [Pseudomonas stutzeri DSM 4166]
          Length = 169

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T RWY++Q     E +A E +              E   P +   + R  +   +    F
Sbjct: 6   TARWYLIQTKPRQEARAEEHLLR---------QHFECYRPLKASAATRSAQGAKAGEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+   T   ++ I+ T  V   +  G  P+PV D  IE +  ++    + P +  
Sbjct: 57  PGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRLAQDERAPAA-- 114

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            F+ GERV VS G F+    I  + D E  R  + + +  R   V + 
Sbjct: 115 NFKPGERVQVSGGSFSEIEAIFVSSDGE-ERSVILLNLLQREQKVRVP 161


>gi|300309822|ref|YP_003773914.1| transcription activator protein [Herbaspirillum seropedicae SmR1]
 gi|300072607|gb|ADJ62006.1| transcription activator protein [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 14/177 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY+V      E  A +++              E  +P      VR+G    S    FP
Sbjct: 1   MQWYLVHTKPRQEVCAQQNLEQ---------QGYECYLPLLHKEKVRRGALTLSSEALFP 51

Query: 63  GYVLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            Y+ I+  A +T K +  I+ T  V   +  G  P+ +++  +  +  Q     +     
Sbjct: 52  RYLFIRLGAGLTSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLAL--QAAQQSEAAPVE 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
             F  G+RV + +G  +   GI    D E+ RV V + +  +   V +A   + KI+
Sbjct: 110 RAFTPGQRVQLVEGALSGIEGIFLEADGER-RVMVLIEMLSKPVSVAVAPGSLRKIL 165


>gi|113969657|ref|YP_733450.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
 gi|114046887|ref|YP_737437.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
 gi|113884341|gb|ABI38393.1| transcription antitermination protein nusG [Shewanella sp. MR-4]
 gi|113888329|gb|ABI42380.1| transcription antitermination protein nusG [Shewanella sp. MR-7]
          Length = 166

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++G+K       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q      +
Sbjct: 53  NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHEL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++   DGPF    GI +     K R  V   I G++  + +    VE++
Sbjct: 113 ELKTGEKIRFKDGPFIDLEGIFQEKCPNK-RCQVLFNIMGQIKTLTVPMQSVERV 166


>gi|226313581|ref|YP_002773475.1| transcription antitermination protein [Brevibacillus brevis NBRC
           100599]
 gi|226096529|dbj|BAH44971.1| putative transcription antitermination protein [Brevibacillus
           brevis NBRC 100599]
          Length = 177

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY + V S  E+   + +    +   L  +V +  +P       + G   N  + FFP
Sbjct: 1   MKWYAIFVESGKEEVVQKYLRLYFNEQSLKSIVPKRLVP-----EKKSGIVYNVLKNFFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP--------VTDSEIEHIMNQVEAAV 114
           GYVLI+  MT++++H IK  P+ +  +  G   S         + + EI  I+  +    
Sbjct: 56  GYVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGE 115

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               S V+ E   +V V  GP     GI+K VD+ K+R  + +   G    +++    + 
Sbjct: 116 VVDYSKVYLE-NSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILS 174

Query: 175 K 175
           K
Sbjct: 175 K 175


>gi|292490822|ref|YP_003526261.1| transcriptional activator RfaH [Nitrosococcus halophilus Nc4]
 gi|291579417|gb|ADE13874.1| transcriptional activator RfaH [Nitrosococcus halophilus Nc4]
          Length = 172

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 2   TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           + R WY++      E          L++  L+    E  +P  R +  R  R++      
Sbjct: 7   SKRSWYLIWCKPRKE---------HLAQENLERQRFETYLPLVRQLRRRAHRRITVVEPL 57

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I        + +I+ T  V   +  G+ P+ V D  I+ +           + S
Sbjct: 58  FPRYLFIHLDKEKDNWSSIRSTIGVTALVRFGDQPAQVPDRLIKELQAHESPDGIHDLPS 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             F+ G+++ + +GP A   GI    +  K R  V + I G+    E+  N +
Sbjct: 118 RSFQQGQKIRIEEGPLAGHEGIWLASNG-KERAQVLLEIMGKQIKTEMNQNWL 169


>gi|114319257|ref|YP_740940.1| transcription antitermination protein nusG [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114225651|gb|ABI55450.1| transcription antitermination protein nusG [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 177

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 11/173 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E           +R  L        +P  RVV  R  R+V      FP Y
Sbjct: 15  WYLIYTKPRQE---------EAARDNLGRQGFHAWLPRVRVVKRRGTRRVPVVEPMFPRY 65

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVSSVFF 123
           + ++     + +  I  T  V   +  G  P+ V    +  +  + +        +    
Sbjct: 66  LFVELDSAYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQP 125

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ V V+ G FA +  + +     + RV V + + G+ + V L  + ++ +
Sbjct: 126 RAGDTVRVAHGAFAGYEAVFQARSG-RERVLVLLEVAGKQSRVTLPADDIDPV 177


>gi|117919822|ref|YP_869014.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
 gi|117612154|gb|ABK47608.1| transcription antitermination protein nusG [Shewanella sp. ANA-3]
          Length = 166

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++G+K       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q      +
Sbjct: 53  NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHEL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++   DGPF    GI +     K R HV   I G+   V +  + V ++
Sbjct: 113 ELKTGEKIRFKDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQSKVVTVPQDSVVRL 166


>gi|330960426|gb|EGH60686.1| transcriptional activator RfaH [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 176

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     EK+A E +              E   P +        R  + E   FPG
Sbjct: 15  RWYLIQTRPRQEKRAEEHLRR---------QRFECYRPLKAAAKPSLIRVQSEEA-LFPG 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I+       ++ I+ T  V   +  G +P P+ D  IE I +++      P     F
Sbjct: 65  YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPIHDQLIEQIRDRLT----LPQRHTAF 120

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             GE+V ++ G F     I    D    R  + + +  R   V L  + + +I
Sbjct: 121 AQGEQVMITTGSFCDVEAIFLTADG-NERAVILLNLLQRQQKVVLPISSLSRI 172


>gi|126175096|ref|YP_001051245.1| transcriptional acivator RfaH [Shewanella baltica OS155]
 gi|125998301|gb|ABN62376.1| transcription antitermination protein nusG [Shewanella baltica
           OS155]
          Length = 168

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P        +GRK       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSHRGRKQVCRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q  ++  +
Sbjct: 53  NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEAL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++  +DGPF    GI +     K R H+   I G+V  V +    ++++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRV 166


>gi|269102125|ref|ZP_06154822.1| transcriptional activator RfaH [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162023|gb|EEZ40519.1| transcriptional activator RfaH [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 200

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 1   MTPRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M   WY++    S  E+  +           LD    E   P  R+  + +G+K      
Sbjct: 35  MMKGWYLLYCKRSEQERAVI----------NLDRQGVECYYPQVRIDKIVRGKKQEVLEP 84

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FP YV +        Y +I+ T  V  F+  G  P  V    I  +M   +    +   
Sbjct: 85  LFPSYVFVYFDPEQVSYTSIRSTRGVADFIRRGSTPQLVQQELIYQLMMNEDCDEHKEAL 144

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               + G+ + +S G F   + I +  D EK R  + + + GR   V +    + K
Sbjct: 145 CELPKPGDSLTLSQGQFKGIDAIYQEADGEK-RSFMLINLLGRAVTVSVDNKDLIK 199


>gi|229003111|ref|ZP_04160959.1| Transcription antitermination protein nusG [Bacillus mycoides
           Rock1-4]
 gi|228758139|gb|EEM07336.1| Transcription antitermination protein nusG [Bacillus mycoides
           Rock1-4]
          Length = 107

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 71  MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFFEVGERV 129
           MTD  ++ +++TP V GF+G+  + S  +    E ++  ++   +   V    FE+ E V
Sbjct: 1   MTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVVDFDFELHETV 60

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+
Sbjct: 61  RVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 107


>gi|307302360|ref|ZP_07582118.1| NusG antitermination factor [Shewanella baltica BA175]
 gi|306914398|gb|EFN44819.1| NusG antitermination factor [Shewanella baltica BA175]
          Length = 168

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++GRK       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q  ++  +
Sbjct: 53  NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEAL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++  +DGPF    GI +     K R H+   I G+V  V +    ++++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRV 166


>gi|116750229|ref|YP_846916.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
 gi|116699293|gb|ABK18481.1| transcription antitermination protein nusG [Syntrophobacter
           fumaroxidans MPOB]
          Length = 207

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 10/173 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           +  W+ + V    EK  +  +              +  +P     S R+ R+       F
Sbjct: 33  SKAWFALYVQVKHEKDIIRRLEQ---------KDVDCFLPLMECWSKRRDRRKRITVPLF 83

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV +  V+ +     I  TP  +  +   E P P+        +  +  A Q      
Sbjct: 84  PGYVFVYTVLDNYTNVDILKTPGAVNIVRNSEGPLPIPSY-QIRNLRTILGASQSIELHP 142

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           + + GE V V  GP     GI+K    ++ R+ V V    R   VEL    VE
Sbjct: 143 YLKEGECVRVVRGPLNGCVGILKRHSPKQGRLVVRVDCIQRSVSVELDVEDVE 195


>gi|83309147|ref|YP_419411.1| transcription antitermination protein nusG [Magnetospirillum
           magneticum AMB-1]
 gi|82943988|dbj|BAE48852.1| Transcription antitermination protein nusG [Magnetospirillum
           magneticum AMB-1]
          Length = 167

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W++V  ++N EK         ++   L     ++ +P          +    +   
Sbjct: 1   ME-SWFVVHTHANAEK---------IAAGHLQRQHFDVYLPQYSKRRSHARKVEWVKAPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++       + +I+ T  V   +  G  P P+    I+ I  + + +    +  
Sbjct: 51  FPRYLFLRMDPDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGE 110

Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            + F  G+R+ + +GP A   G+ + +D + +RV + + + GR   V +    V 
Sbjct: 111 AMPFASGQRLEIVEGPLAEQLGLFQGLD-DMNRVVLLLDLLGRQVRVRVPLEAVR 164


>gi|304409927|ref|ZP_07391546.1| NusG antitermination factor [Shewanella baltica OS183]
 gi|304351336|gb|EFM15735.1| NusG antitermination factor [Shewanella baltica OS183]
          Length = 168

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++GRK       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q  ++  +
Sbjct: 53  NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPAQTVLAEAL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++  +DGPF    GI +     K R H+   I G+V  V +    ++++
Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRV 166


>gi|304373041|ref|YP_003856250.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1]
 gi|304309232|gb|ADM21712.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1]
 gi|330723344|gb|AEC45714.1| transcription antitermination protein NusG [Mycoplasma hyorhinis
           MCLD]
          Length = 198

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 15/188 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT-------IPSERVVSVRKGRKVNS 56
           +WY++   SN E  A+E +  R+   GL+    EI           E    ++  + V  
Sbjct: 5   KWYMISTISNKEDTAIELLKNRIKSEGLEQYFKEIKKFEITTISDKEYEKKLKGEKYVEK 64

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-------SEIEHIMNQ 109
           +   + GY+ I   M D V+  +++T  + G +G+    +  T           E    +
Sbjct: 65  KENLYKGYIFINMQMNDAVWFIVRNTQYITGLIGSSGKGTKPTPVSEKQIRKMEEKQREK 124

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +    +  + +  F+VG  V +  GPF    G + +VD   +   V++ + GR T   + 
Sbjct: 125 LVEYAKFGIINSPFKVGTVVEIIQGPFIGEIGKISSVDLVNASSAVQLEVLGRKTETLIE 184

Query: 170 YNQVEKIV 177
              + KI+
Sbjct: 185 NKNL-KII 191


>gi|24374707|ref|NP_718750.1| transcriptional activator rfaH, putative [Shewanella oneidensis
           MR-1]
 gi|24349362|gb|AAN56194.1|AE015757_4 transcriptional activator rfaH, putative [Shewanella oneidensis
           MR-1]
          Length = 166

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++G+K       FP
Sbjct: 2   KAWYLLYCKPRSEVRAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            Y+ I    +      +  T  V   +   E  +P+ D  I  I  +     Q  + + +
Sbjct: 53  NYLFINFDPSQTSVKQVHSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTPL 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE++   DGPFA    I +     K R HV   I G++  + +    VE++
Sbjct: 113 ELKTGEKIRFKDGPFADLEAIFQEKCPNK-RCHVLFNIMGQINILTVPEQSVERV 166


>gi|163783795|ref|ZP_02178779.1| transcription antitermination protein NusG [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880948|gb|EDP74468.1| transcription antitermination protein NusG [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 101

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 79  IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138
           I+ TP +   +  G    P+ + E+  I+ QV+  V+     V FE G++V V +GPF +
Sbjct: 6   IEKTPHIYKPVLVGGKVVPLKEEEVNRILEQVQKGVK--TRKVEFEKGDQVRVIEGPFMN 63

Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F G V+ V  E+ ++ V + IFGR+TPVEL + QVEKI
Sbjct: 64  FTGTVEEVHPEREKLTVLISIFGRLTPVELDFTQVEKI 101


>gi|328953460|ref|YP_004370794.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328453784|gb|AEB09613.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 190

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 10/173 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T  WY+V    + E +       RL RSG +       +P   V S R  R++      F
Sbjct: 26  TASWYVVYTACHHEFRV----EQRLKRSGRE-----TFLPWIAVPSRRCDRRLQINVPLF 76

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+  +T  VYH I   P V   L            E+   + Q  A+++      
Sbjct: 77  PGYLFIREQLTPVVYHEIVRLPGVARILRCNG-GYATVCPEVIESIRQSLASLRPCGPHA 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           F + G++V V +GP     GI+K +   K R+ + V +F R   VEL  + VE
Sbjct: 136 FVQRGKQVRVVEGPLRGIVGIIKELKHRKRRLVITVELFKRSMAVELDDDAVE 188


>gi|116749134|ref|YP_845821.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
 gi|116698198|gb|ABK17386.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB]
          Length = 212

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 10/173 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T  W+ + V    EK+ V  +         D    +  +P     S R  R+       F
Sbjct: 38  TKSWFALYVQVKHEKEVVRRL---------DQKSIDCFLPLMECWSKRLDRRKRITLPLF 88

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV +  V+ +     I  TP  +  L   E P P+        +  +  + +      
Sbjct: 89  PGYVFVHTVLDNYTNVNILKTPGALSILKNSEGPLPI-PVYQIENLQTILNSSKSLDLHP 147

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           + + GE V V  GP +   GI+K    +K R+ V V    +   VEL    VE
Sbjct: 148 YLKEGEWVRVIRGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVE 200


>gi|301058101|ref|ZP_07199153.1| transcription termination/antitermination factor NusG [delta
           proteobacterium NaphS2]
 gi|300447733|gb|EFK11446.1| transcription termination/antitermination factor NusG [delta
           proteobacterium NaphS2]
          Length = 179

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW+ +   S  E+K            GL     E  +P  +V+S RK R+        PG
Sbjct: 15  RWWALHTRSRFEQKVYT---------GLCGKSLEALLPRIQVMSRRKDRRKKILVPLLPG 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +++ +  + YH I  T  V+  +     P P  + EI  +M  ++   +   +  + 
Sbjct: 66  YVFVRSTLAPEEYHRIIQTVGVVRMVSFRGTPIPADEKEIASLMI-MDGTDRTVQNRSYM 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+RV + +GP     G      ++  RV + + +  R   VE+    +E+I
Sbjct: 125 REGDRVMIMEGPLKGLEGFYIRHKDKTERVVISIELLQRSLEVEIEDWSLERI 177


>gi|146340576|ref|YP_001205624.1| putative transcription antitermination protein NusG [Bradyrhizobium
           sp. ORS278]
 gi|146193382|emb|CAL77398.1| putative transcription antitermination protein NusG [Bradyrhizobium
           sp. ORS278]
          Length = 201

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYI++ + +CE K +++   R     +   +  +T+  E     R    +       P  
Sbjct: 31  WYILRTHPHCEAKVMKAFRLR----NISAYLPVMTVSKEFRRMRRGFEWIERRDVVSPLI 86

Query: 65  VLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSVF 122
           +    +   ++ +   +     +G L  GE    +T    + I    + A   +   +  
Sbjct: 87  LGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDIRKIEDIANTPKSKRARA 146

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           FEVG+ V V  GPF  F+  V+ +D  + R+ V   IFGR+TP+++   ++E +
Sbjct: 147 FEVGQLVRVLSGPFRYFSARVERID-SRGRLSVGAEIFGRITPIDIDEGEIEAV 199


>gi|127512329|ref|YP_001093526.1| NusG antitermination factor [Shewanella loihica PV-4]
 gi|126637624|gb|ABO23267.1| transcription antitermination protein nusG [Shewanella loihica
           PV-4]
          Length = 175

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 20/182 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V      E +A +++              E  +P+      + G+        FP
Sbjct: 2   KSWYLVYCKPRGETRAQQNLAL---------QQIETYLPTLPQQITKSGKNSVKRLPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV---- 118
            Y+ I     +     I  T  V   +G  E  + + D+ +  I  +    +        
Sbjct: 53  CYLFIYFDPLEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSD 112

Query: 119 ------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                 +     VG++V   +GPF    GI +    +K R H+   I G+   V ++   
Sbjct: 113 DLLSGNAEPRLSVGDKVKFVEGPFKELEGIFEEQSGDK-RCHILFEIMGQQKRVSVSRVS 171

Query: 173 VE 174
           ++
Sbjct: 172 IK 173


>gi|212634401|ref|YP_002310926.1| transcriptional activator RfaH [Shewanella piezotolerans WP3]
 gi|212555885|gb|ACJ28339.1| Transcriptional activator RfaH [Shewanella piezotolerans WP3]
          Length = 174

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 18/180 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++              E  IP+        G+        FP
Sbjct: 2   KAWYLLYCKPRGEARAQQNLAL---------QEIETYIPTYPEEKTHNGKVTVRRVSLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--------SEIEHIMNQVEAAV 114
            Y+ I           I +T  VI  +G  E  +P+ +         E + I   +    
Sbjct: 53  SYLFIHFDPQVTSVSRIHNTRGVIRIVGCKELMTPIDEGVIGAIKAREHKWINELLPETR 112

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +       + G++V   DGPFA   GI +  + EK R +V   I G+   V +  + V+
Sbjct: 113 CKEELVCPVKSGDKVKFVDGPFAELEGIFQEKNGEK-RCYVLFDIMGKQQRVSVDRSTVK 171


>gi|281418039|ref|ZP_06249059.1| NusG antitermination factor [Clostridium thermocellum JW20]
 gi|281409441|gb|EFB39699.1| NusG antitermination factor [Clostridium thermocellum JW20]
          Length = 178

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 11/179 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V S  E+     +        L   ++   IP + V+  R G      R  FP
Sbjct: 1   MYWYVLFVKSGRERNVERYLKKE-----LKADISTPFIPLQEVLFKRSGSVKKEIRLLFP 55

Query: 63  GYVLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           GYV I+++++     +++ + I  +  +I  L   +    + +SE + +++         
Sbjct: 56  GYVFIESILSGNEFLEEINYLIDRSSDIISLLKYSDTEIAMRESERQRLLSLCNNEHCIE 115

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             S     G+R+ + +GP      IVK V+  K    +E+ I G    V +A   V+K+
Sbjct: 116 A-SYGIIEGDRIRIFEGPLKGMESIVKKVNRHKREALIEIEIMGDARLVTVALEIVKKV 173


>gi|239947116|ref|ZP_04698869.1| transcription antitermination protein NusG [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921392|gb|EER21416.1| transcription antitermination protein NusG [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 83

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/81 (49%), Positives = 59/81 (72%)

Query: 95  PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
           P  +T+SEI++I N +EA  +   +S  +EVGE V V+DGPF +F G V+ +D+EK+R+ 
Sbjct: 1   PRALTESEIQNIFNNLEAEAKEAKNSKLYEVGEIVAVTDGPFETFMGTVEEIDQEKNRLK 60

Query: 155 VEVVIFGRVTPVELAYNQVEK 175
           V V IFG+ TP+EL +NQV+K
Sbjct: 61  VSVSIFGKATPIELNFNQVKK 81


>gi|121730820|ref|ZP_01682892.1| transcription termination factor rho [Vibrio cholerae V52]
 gi|121627605|gb|EAX60295.1| transcription termination factor rho [Vibrio cholerae V52]
          Length = 123

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 78/117 (66%), Gaps = 1/117 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N++E A + P 
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPR 123


>gi|75675741|ref|YP_318162.1| transcription antitermination protein nusG [Nitrobacter
           winogradskyi Nb-255]
 gi|74420611|gb|ABA04810.1| Transcription antitermination protein nusG [Nitrobacter
           winogradskyi Nb-255]
          Length = 234

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 18/186 (9%)

Query: 1   MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M P+ W+I++ +  CE+K          R  +      I      V  V         +R
Sbjct: 30  MQPKYWFILRTHPGCERKV----MREFERRNISAYCPLIAKQQRVVRRVHGSSWTYEIKR 85

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115
                +  + V          D   V G+L  G   + +  SE E   ++V         
Sbjct: 86  LVQVPLFPQLVFVPDFERVPADIGGVSGWLRFGGWRARI-PSEREATSDRVACMADIHAL 144

Query: 116 -------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
                  +   +  FE+G  V + DGPF  F+G ++ +D  K R+ V + IFGR++P E+
Sbjct: 145 VAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLD-SKGRLKVAIEIFGRLSPTEM 203

Query: 169 AYNQVE 174
           +  Q+E
Sbjct: 204 SEAQIE 209


>gi|167463025|ref|ZP_02328114.1| putative transcription antiterminator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383390|ref|ZP_08057173.1| transcription antitermination-like protein NusG [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152294|gb|EFX45117.1| transcription antitermination-like protein NusG [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 176

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 12/176 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++ V +  E    + I    +   L   + +  +P       R        R  FPGY
Sbjct: 3   WYVLFVTTGKEDVVGKYISNFCNHLSLQCFIPKKVVPECHKGVRRD-----VIRVLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-------PSPVTDSEIEHIMNQVEAAVQRP 117
           + I+  M+  +Y+ +K+ P +   + +G+               E    +  +       
Sbjct: 58  IFIRTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTI 117

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             S    + ++V V  GP      ++K VD+ K R  +EV +  +   V++  N +
Sbjct: 118 EYSEVSIINKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGINIL 173


>gi|169830052|ref|YP_001700210.1| transcription antitermination protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994540|gb|ACA42080.1| Transcription antitermination protein [Lysinibacillus sphaericus
           C3-41]
          Length = 114

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEA 112
             R+ FPGYVL++ +MTD  ++ +++TP V GF+G    G  P+P+   E + ++ Q+  
Sbjct: 1   MMRKVFPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQMGM 60

Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
             +     V   +GE V V +GPFA F G V+ +D EK ++ V V +FGR T
Sbjct: 61  TDKIV--EVDISIGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVSVDMFGRET 110


>gi|220926733|ref|YP_002502035.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219951340|gb|ACL61732.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 254

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 8/172 (4%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW++V       ++A + +            +  +       V    GR+   +R+    
Sbjct: 90  RWHVVVAKPRYARRAAKDLNR--------AGIPAVLTDERVEVVAENGRRRIVQRQLLRR 141

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
            + +       V     +T  V   +  G     V          Q  +          F
Sbjct: 142 VLFVGLKAGAPVDAVHGETYFVRDAVRDGLGRPIVVPPNELSQFVQALSDTLTERDPSAF 201

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E G+ V + DGPFASFNG+V++ D    R+ V V IFGR++ V L ++QVE+
Sbjct: 202 EPGDEVWIKDGPFASFNGVVEDADFVTRRLKVGVQIFGRISSVGLDFSQVER 253


>gi|319427039|gb|ADV55113.1| transcriptional acivator RfaH [Shewanella putrefaciens 200]
          Length = 168

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++G+K       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121
            Y+ IK   +      +  T  V   +   E  +P+ D  I  I  +   + Q       
Sbjct: 53  NYLFIKFDPSQTSVRQVHSTRGVNRIINCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEES 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             ++GE++   DGPF    G+ +     K R HV   + G+V  + +    +E++
Sbjct: 113 ELKMGEKIRFKDGPFVDLEGVFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERV 166


>gi|222446920|pdb|2K06|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
           Nusg
          Length = 123

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+++    +P 
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123


>gi|146293640|ref|YP_001184064.1| NusG antitermination factor [Shewanella putrefaciens CN-32]
 gi|145565330|gb|ABP76265.1| transcription antitermination protein nusG [Shewanella putrefaciens
           CN-32]
          Length = 168

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    +   L+       +P       ++G+K       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121
            Y+ IK   +      +  T  V   +   E  +P+ D  I  I  +   + Q       
Sbjct: 53  NYLFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEES 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             ++GER+   DGPF    GI +     K R HV   + G+V  + +    +E++
Sbjct: 113 ELKMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERV 166


>gi|28870605|ref|NP_793224.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853853|gb|AAO56919.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331019789|gb|EGH99845.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 170

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E +              E   P  R  + +   K   E   FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRR---------QDFECFRP-LRAAAKKIAAKAQVEEALFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I        ++ I+ T  V   +  G +P PV D  IE I  ++      P  ++ F
Sbjct: 59  YLFIHMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLC----TPAPALRF 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G++V ++ G +     I    D    R  + + +  R   V L  + + +I
Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166


>gi|307265355|ref|ZP_07546912.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919639|gb|EFN49856.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 180

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++   S  E K  + I     +  +     ++ IP  +++   KG+ V   +  FP
Sbjct: 2   KKWYVIFTRSGYENKVKDIIENCFKQEEV-----KLLIPKRKIIERVKGQPVEKIKLLFP 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + A M+D +Y+ I +  K   FL  G+ P+ V + E++ I+   + +    +S   
Sbjct: 57  GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILALTKNSDLIDLSKGI 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            E GERV + +GP   + G++K +D+ K R  V + I G +  V+LA   +E
Sbjct: 117 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 167


>gi|330974585|gb|EGH74651.1| transcriptional activator RfaH [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 170

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 1   MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M+      RWY++Q     E +A E +              E   P  +  + + G +V 
Sbjct: 1   MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQADAKKTGTRVQ 50

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           +    FPGY+ I        ++ I+ T  V   +  G +P PV D  IE I  ++     
Sbjct: 51  AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P     F  G+ V ++   +     I  + D    R  + + +  R   V L  + + +
Sbjct: 107 TPAPKTQFAQGDTVLITHASWGDIEAIFLSKDG-TQRAVILLNMLQRQQKVVLPISSLSR 165

Query: 176 I 176
           I
Sbjct: 166 I 166


>gi|170726005|ref|YP_001760031.1| transcriptional acivator RfaH [Shewanella woodyi ATCC 51908]
 gi|169811352|gb|ACA85936.1| transcriptional acivator RfaH [Shewanella woodyi ATCC 51908]
          Length = 179

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 23/189 (12%)

Query: 1   MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           MT + WY++      E +AV           L     +  +P+       KG        
Sbjct: 1   MTMKAWYLLYCKPRGEARAV---------HNLTLQNIDTYLPTIGEEKRVKGEVSIKRIP 51

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------- 112
            FPGY+ I           I  T  V   +G  E  + + DS I  I  +          
Sbjct: 52  LFPGYLFINIDPQVTSVARIHSTRGVGRIVGCNELMTSIDDSIIHSIRLREHKLLSELLP 111

Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                      S+V    G++V  ++GPFA   GI      +K R HV   I G+   V 
Sbjct: 112 ASELSQKCDGSSTVEINPGDQVKFTEGPFADLEGIFAEKSGDK-RCHVLFEIMGQKKRVS 170

Query: 168 LAYNQVEKI 176
           +  + ++ +
Sbjct: 171 VPRDSIKPV 179


>gi|213971370|ref|ZP_03399485.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1]
 gi|301381257|ref|ZP_07229675.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059482|ref|ZP_07251023.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
           K40]
 gi|302129862|ref|ZP_07255852.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213923908|gb|EEB57488.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1]
          Length = 170

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E +              E   P  R  + +   K   E   FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRR---------QDFECFRP-LRAAAKKIAAKAQVEEALFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P  ++ F
Sbjct: 59  YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLC----TPAPALRF 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G++V ++ G +     I    D    R  + + +  R   V L  + + +I
Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166


>gi|92114264|ref|YP_574192.1| transcription antitermination protein nusG [Chromohalobacter
           salexigens DSM 3043]
 gi|91797354|gb|ABE59493.1| transcription antitermination protein nusG [Chromohalobacter
           salexigens DSM 3043]
          Length = 182

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 11/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PRWY+VQ                 +   L +    +  P   V   R+ + V      FP
Sbjct: 17  PRWYVVQCKGG---------ESFRAGEHLTNQGYRVFHPVLEVQKKRRNKLVWIAEPLFP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSV 121
            Y+ I        +  I+ T  V+  +G G+ P PV D+ IE +  +       R   + 
Sbjct: 68  HYLFIHLDRVASNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTSGNA 127

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +F  GE V +++GPF +   +      +  R  V + +      +EL    + +
Sbjct: 128 YFRPGEIVEITEGPFQALQAVFDTQQGD-ERAIVLLNMLHHQQRLELPVGHLRR 180


>gi|120598282|ref|YP_962856.1| NusG antitermination factor [Shewanella sp. W3-18-1]
 gi|120558375|gb|ABM24302.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1]
          Length = 168

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 11/173 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E +A +++    +   L+       +P       ++G+K       FP Y
Sbjct: 4   WYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFF 123
           + IK   +      +  T  V   +   E  +P+ D  I  I  +   + Q         
Sbjct: 55  LFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESEL 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           ++GER+   DGPF    GI +     K R HV   + G+V  + +    +E++
Sbjct: 115 KMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERV 166


>gi|228931282|ref|ZP_04094212.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229188095|ref|ZP_04315179.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
           6E1]
 gi|228595336|gb|EEK53072.1| Transcription antitermination protein nusG [Bacillus cereus BGSC
           6E1]
 gi|228828377|gb|EEM74082.1| Transcription antitermination protein nusG [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 179

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 13/179 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY + V S  E      I        L+  +  + +P + V   RKG      R+  PGY
Sbjct: 6   WYALCVRSGYEDLVESLIL-----RDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRPVS 119
           +LI   M  K+Y+ +K+ P    FL   ++        + D EI  I+  +        S
Sbjct: 61  ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQVEKI 176
             +FE G +V V  GP     GI++ +D+ K R  + +   G  ++  V + +   +K+
Sbjct: 121 EAYFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVEFLSSQKL 178


>gi|30248484|ref|NP_840554.1| putative transcriptional activator [Nitrosomonas europaea ATCC
           19718]
 gi|30138370|emb|CAD84379.1| putative transcriptional activator [Nitrosomonas europaea ATCC
           19718]
          Length = 165

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 14/175 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V      EK A +++                 +P   V  +  G     +   FP
Sbjct: 1   MHWYLVHTKPKQEKCAFQNL---------QQQGYRCYLPMLPVEKLHLGNLTVVDEPLFP 51

Query: 63  GYVLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            Y+ I+    D  K +  I+ T  V   +  G  P+ + D  I+ +  Q  +   +P   
Sbjct: 52  RYLFIQLEQGDSAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQEASFQHKPER- 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             F+ GERV +++G FA   GI +  + E+ RV V + +  +   + ++   + K
Sbjct: 111 -LFKPGERVRLTEGAFAGIEGIYQMAEGER-RVMVLIELLSKPVAMRVSPTSLRK 163


>gi|328478515|gb|EGF48215.1| transcription termination/antitermination factor NusG
           [Lactobacillus rhamnosus MTCC 5462]
          Length = 114

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++  YS  E K   ++  R S   +D  +  + +P E     + G++    ++ F
Sbjct: 9   EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
           PGYVL++ VMTD+ +  +++TP V GF+G+  
Sbjct: 69  PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHG 100


>gi|157961221|ref|YP_001501255.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345]
 gi|157846221|gb|ABV86720.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345]
          Length = 173

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++   S  E +A +++              +  +P+     + KG+        FP
Sbjct: 2   KAWYLLYCKSRGESRAQQNLAL---------QQIDTYLPTYPEEKLVKGQSTVRRVLLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-------SEIEHIMNQVEAAVQ 115
            Y+ +           I +T  VI  +G  E  +P+ D            +M+++     
Sbjct: 53  SYLFVHFDPEITSVAKIHNTRGVIRIVGCKELMTPIDDSIIHAIKMREHRLMSELSPIEA 112

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P      E G++VC ++GPFA   GI    + EK R  V   + G+   V +  + ++ 
Sbjct: 113 APTIEPEMERGDKVCFTEGPFAELEGIFDEANGEK-RCFVLFDLMGKQQRVAIKKDSIKP 171

Query: 176 I 176
           +
Sbjct: 172 V 172


>gi|125973877|ref|YP_001037787.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|256004332|ref|ZP_05429314.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
 gi|125714102|gb|ABN52594.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|255991766|gb|EEU01866.1| NusG antitermination factor [Clostridium thermocellum DSM 2360]
 gi|316939925|gb|ADU73959.1| NusG antitermination factor [Clostridium thermocellum DSM 1313]
          Length = 185

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V S  E+K  + +        L+  ++   IP + ++  + G      R  FP
Sbjct: 1   MYWYVLFVKSGKERKVEQYLRKE-----LNADISIPFIPLQEILFKKAGSVKKEIRPLFP 55

Query: 63  GYVLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           GYV +++++      +++ + I  +  +I  L   +    + +SE + +++         
Sbjct: 56  GYVFVESMLPGRDFLEEIKYLINRSSDIISLLKYSDTEIAMRESERQRLLSLCNNNYCIE 115

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             S     G+++ + DGP      +VK ++  +    +E+ I G V  V +A   V K+
Sbjct: 116 A-SYGIIEGDKILIFDGPLKGMESLVKKINRHRREALIEIEIMGDVRLVTVALEVVRKV 173


>gi|220924151|ref|YP_002499453.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219948758|gb|ACL59150.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 230

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 22/184 (11%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV----RKGRKVNSE 57
           + RW++V                R   + L   + +  +P+ R+  V    R GR     
Sbjct: 56  SMRWHLVDA-------------RRKQTARLMAALAQGAVPAVRLQEVVVAERSGRARKVR 102

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-- 115
                  + +     +      +   +V G     E P  V   +++     +    +  
Sbjct: 103 VPLLGRLLFVGLEPGEDASWLQEVYFEVEGVRHVAEKPVLVRGKQLDAFAGNLGGRGEPI 162

Query: 116 ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                ++   FEVGE V V+DGPFASFNG+V+ +D  +  + V V IFGR TPV L  +Q
Sbjct: 163 RRADALTVEDFEVGEPVRVTDGPFASFNGLVEEIDNLEHTLKVAVSIFGRSTPVTLEPSQ 222

Query: 173 VEKI 176
           VE++
Sbjct: 223 VERL 226


>gi|326391515|ref|ZP_08213048.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
 gi|325992444|gb|EGD50903.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200]
          Length = 180

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++   S  E K  + I     +  +     ++ IP  +++   KG+ V   R  FP
Sbjct: 2   KKWYVIFTRSGYENKVRDIIESCFKQEEV-----KLLIPKRKIIEREKGQPVERIRLLFP 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + A M+D +Y+ + D  K   FL  G+ P+ V + E++ I++  + +    +S   
Sbjct: 57  GYVFVNAEMSDDLYYKMSDVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            E GERV + +GP   + G++K +D+ K R  V + I G +  V+LA   +E
Sbjct: 117 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 167


>gi|207108836|ref|ZP_03242998.1| transcription antitermination protein NusG [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 110

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 75  VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDG 134
           ++H I+  P+V  F+G  + P+P+++++I HI+ ++      P   +FFE GE V V +G
Sbjct: 1   MWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKIFFEQGEVVRVVEG 59

Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           PFA+F   V+  D E  ++ + V IFGR TP+E+ ++QVEK+
Sbjct: 60  PFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKL 101


>gi|149925742|ref|ZP_01914006.1| NusG antitermination factor [Limnobacter sp. MED105]
 gi|149825859|gb|EDM85067.1| NusG antitermination factor [Limnobacter sp. MED105]
          Length = 179

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR-KVNSERR 59
           M  +WY++      E          ++   L      +  P  RV   + G+  V     
Sbjct: 13  MA-QWYVMYTKPRQE---------TVALENLQRQNYNVFFPQARVQKRKTGQGTVQVVEP 62

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FP Y+ I+  +    +  ++ T   +  +  G  PS V    IE I +Q+++     + 
Sbjct: 63  LFPRYMFIQLEVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLL 122

Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +   EVG  V V++GPF    G +     +  RV V + + G    VELA +Q++K
Sbjct: 123 KLNELEVGGEVRVAEGPFEGMMGKIAARKSD-QRVIVLLNVLGAERSVELAQSQLDK 178


>gi|295106671|emb|CBL04214.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
          Length = 174

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQV    E++        + +   D ++ E  IP   ++   KG          PGY
Sbjct: 2   WYVVQVVGGRERRV----LHLVEQLVDDDVLQECFIPQYEIMKKTKGEWKRRSEILLPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +     D+    ++  P     LG      P+   EI  I +      +    S    
Sbjct: 58  LFLITDKVDQAADELRKVPAFTKLLGNDNAFIPLNADEIAFIDSFTTKDHRVVEMSEGVI 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ + ++ GP      +VK +D  K   +VE  +FGR   +++    V K
Sbjct: 118 EGDEISITKGPLVHQTALVKKIDRHKRLAYVETTMFGRKLNLKVGLEIVRK 168


>gi|71734584|ref|YP_275310.1| transcriptional activator RfaH [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555137|gb|AAZ34348.1| transcriptional activator RfaH [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 170

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++Q     E +A E +              +   P  +V   +   +V ++   F
Sbjct: 7   EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P    
Sbjct: 57  PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F  G+ V ++ G ++    I  + D    R  + + +  R   + L  + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMGLPISSLSRV 166


>gi|237807394|ref|YP_002891834.1| transcriptional activator RfaH [Tolumonas auensis DSM 9187]
 gi|237499655|gb|ACQ92248.1| transcriptional acivator RfaH [Tolumonas auensis DSM 9187]
          Length = 167

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+       E++A            L +   +   P      + +G+ +      FP
Sbjct: 2   KHWYLAYCRPKEEERAK---------LHLRNQGVDSYYPLVLTRKIIRGKAMEKIEPMFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +   + +     ++ T  +   +G G     V    +  +M   ++   R V S  
Sbjct: 53  RYLFVHMDIEEFSPLKVRSTRGIHHIVGHGSTWDKVPAELVYQLMRNEDSDESRDVVSRL 112

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
            + G+ V  ++GPF     I +  D    R  + + I  +  
Sbjct: 113 PKTGQMVIFNEGPFEGLQAIYQEPDG-NQRAFLLLSILNQDI 153


>gi|330976250|gb|EGH76312.1| transcriptional activator RfaH [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 170

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 20/181 (11%)

Query: 1   MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M+      RWY++Q     E +A E +              E   P +        +   
Sbjct: 1   MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGAK-AQ 50

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           +    FPGY+ I        ++ I+ T  V   +  G +P PV D  IE I  ++     
Sbjct: 51  AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P     F  G+ V ++   +     I  + D    R  + + +  R   V L  + + +
Sbjct: 107 TPAPKAQFTQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSR 165

Query: 176 I 176
           I
Sbjct: 166 I 166


>gi|257063934|ref|YP_003143606.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476]
 gi|256791587|gb|ACV22257.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476]
          Length = 169

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV +N E + +  I   + +     ++ E  +P   V+   +G+    +    PGY
Sbjct: 2   WYVIQVGTNQEDRVIGLIRSFVGK----DVLKEAFVPQVEVMRRSRGQWQKRKELLLPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V + A   +K+   + D P     LG   + +P+ D EI+ +        +    S    
Sbjct: 58  VFVIATDPEKLNQALIDVPAFTRLLGNDVSFTPLLDDEIKFLEAFTAPDRRIVRMSKGVI 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+++ +++GP     G++K +D  K   ++E+ + GR   +++    V K
Sbjct: 118 EGDQIIINEGPLRGQTGLIKRIDRHKRLAYLEMTVMGRKKMIKVGLEIVSK 168


>gi|289678572|ref|ZP_06499462.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
           FF5]
          Length = 170

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E +              E   P +        +   +    FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGAK-AQAGEPLFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I        ++ I+ T  V   +  G +P PV D  IE I  ++      P     F
Sbjct: 59  YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA----TPAPKTQF 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ V ++   +     I  + D    R  + + +  R   V L  + + +I
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSRI 166


>gi|167957245|ref|ZP_02544319.1| hypothetical protein cdiviTM7_01145 [candidate division TM7
           single-cell isolate TM7c]
          Length = 113

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 65/105 (61%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY V  YS  E K  +SI  R++   +   +  + +P E+ + ++ G++   +R+ F
Sbjct: 9   TRQWYAVHTYSGYEDKVADSIRQRINAVDMADKIFAVMVPKEKQIEIKNGKRKIVDRKIF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
            GY L++  +T++ ++ +++TP V GF+G+G  P+PV+D+EI+  
Sbjct: 69  QGYCLVEMKLTEETWYIVRNTPGVTGFVGSGTEPTPVSDAEIKKN 113


>gi|298487576|ref|ZP_07005617.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157668|gb|EFH98747.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 170

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++Q     E +A E +              +   P  +V   +   +V ++   F
Sbjct: 7   EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P    
Sbjct: 57  PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F  G+ V ++ G ++    I  + D    R  + + +  R   + L  + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSGDG-TERAVILLNMLQRQQKMVLPISSLSRV 166


>gi|47168441|pdb|1NZ9|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
           C-Terminal (Ngc) Domain From Thermus Thermophilus
          Length = 58

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            V F  G++V V  GPFA F G V  ++ E+ +V V V IFGR TPVEL ++QV K
Sbjct: 2   QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57


>gi|330898232|gb|EGH29651.1| transcriptional activator RfaH [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 170

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 20/181 (11%)

Query: 1   MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M+      RWY++Q     E +A E +              E   P +        +   
Sbjct: 1   MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGAK-AQ 50

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           +    FPGY+ I        ++ I+ T  V   +  G +P PV D  IE I  ++     
Sbjct: 51  AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P     F  G+ V ++   +     I  + D    R  + + +  R   V L  + + +
Sbjct: 107 TPAPKAQFTQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLTMLQRQQKVVLPISSLSR 165

Query: 176 I 176
           I
Sbjct: 166 I 166


>gi|330888816|gb|EGH21477.1| transcriptional activator RfaH [Pseudomonas syringae pv. mori str.
           301020]
          Length = 170

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++Q     E +A E +                  P  +V   +   +V ++   F
Sbjct: 7   EARWYLIQTKPRQEARAEEHLRR---------QHFHCYRP-LQVDVKKTAARVQADEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P    
Sbjct: 57  PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F  G+ V ++ G ++    I  + D    R  + + +  R   + L  + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166


>gi|257484619|ref|ZP_05638660.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628356|ref|ZP_06461310.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650105|ref|ZP_06481448.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320323819|gb|EFW79903.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327958|gb|EFW83963.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330869759|gb|EGH04468.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330882283|gb|EGH16432.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|331011293|gb|EGH91349.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 170

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++Q     E +A E +              +   P  +V   +   +V ++   F
Sbjct: 7   EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P    
Sbjct: 57  PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F  G+ V ++ G ++    I  + D    R  + + +  R   + L  + + ++
Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166


>gi|116623748|ref|YP_825904.1| NusG antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226910|gb|ABJ85619.1| NusG antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 179

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ V+V SN EKK+ + +              +   PS         R    ++  FPGY
Sbjct: 20  WFAVKVRSNFEKKSADILRE---------KGYQEFAPSYPSRRYWSDRVKVIDQPLFPGY 70

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V  +      +      T  V+  +G G   +PV + E+  +   + +++          
Sbjct: 71  VFCRFHPNHFLPVLQ--TAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLH- 127

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           VG +V +  GP A   GI++ +  +  R+ V + +  R    E+  N V
Sbjct: 128 VGRKVLIRRGPLAGVEGILEEI-RKGYRIVVSISLLQRSVTAEIDANWV 175


>gi|28897599|ref|NP_797204.1| transcriptional activator RfaH [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838389|ref|ZP_01991056.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810]
 gi|260363316|ref|ZP_05776183.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030]
 gi|260878245|ref|ZP_05890600.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034]
 gi|260895439|ref|ZP_05903935.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466]
 gi|260903333|ref|ZP_05911728.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037]
 gi|28805811|dbj|BAC59088.1| putative transcriptional activator RfaH [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748248|gb|EDM59107.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810]
 gi|308088632|gb|EFO38327.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466]
 gi|308090167|gb|EFO39862.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034]
 gi|308107999|gb|EFO45539.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037]
 gi|308113596|gb|EFO51136.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030]
 gi|328473416|gb|EGF44264.1| transcriptional activator RfaH [Vibrio parahaemolyticus 10329]
          Length = 166

 Score = 87.4 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  + +G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQIRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV  +        + +++ T  V+ F+  G  P  V    +  +    +   ++ +S  
Sbjct: 53  CYVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELKQLEKCCTEKNISEC 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G++V V  G FA  + I +  D EK R  + V +  +  PV +    +
Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMISKRVPVSIDNTDL 163


>gi|548392|sp|P36262|NUSG_LIBAS RecName: Full=Transcription antitermination protein nusG
 gi|144455|gb|AAA23104.1| transcription antitermination protein [Candidatus Liberibacter
           asiaticus]
 gi|739022|prf||2002224A transcription antitermination protein
          Length = 70

 Score = 87.4 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
           NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE
Sbjct: 1   NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 60

Query: 168 LAYNQVEKIV 177
           LAYNQVEKIV
Sbjct: 61  LAYNQVEKIV 70


>gi|66046455|ref|YP_236296.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257162|gb|AAY38258.1| Transcriptional activator RfaH [Pseudomonas syringae pv. syringae
           B728a]
          Length = 170

 Score = 87.4 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 1   MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M+      RWY++Q     E +A E +              E   P  +  + + G +V 
Sbjct: 1   MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQADAKKTGTRVQ 50

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           +    FPGY+ I        ++ I+ T  V   +  G +P PV D  IE I  ++     
Sbjct: 51  AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P     F  G+ V ++   +     I  + D    R  + + +  R   V L  + + +
Sbjct: 107 TPAPKTQFAQGDAVLITHASWGDVEAIFLSKDG-TQRAVILLNMLQRQQKVVLPISSLSR 165

Query: 176 I 176
           I
Sbjct: 166 I 166


>gi|171920742|ref|ZP_02931951.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|195867483|ref|ZP_03079487.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|209554214|ref|YP_002285036.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|171903489|gb|EDT49778.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|195660959|gb|EDX54212.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|209541715|gb|ACI59944.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 257

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 52/225 (23%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49
           T +WYIV V S  E+K +E+I  +L+  G    ++++ I  E++  V+            
Sbjct: 23  THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82

Query: 50  -----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
                                   E   F GY+ +KA MTD+++  I++T  V G +G+ 
Sbjct: 83  NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142

Query: 93  ENPSPV-----------------------TDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
                                         D +     N V            FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVSLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +    F      +  +D+ K    VE   FGR+  ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247


>gi|210633806|ref|ZP_03297853.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279]
 gi|210159066|gb|EEA90037.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279]
          Length = 217

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V V +  E     ++   + R   + +V E   P       R G  ++ E+   PGY
Sbjct: 37  WYVVNVPTGRE----SALCKVIERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKTLLPGY 92

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V++      +V   +++ P+    L  GE+  P+ D E   I        +    S+   
Sbjct: 93  VIVATEQIGRVKRLLREVPEYTRVLNMGESFVPLADGERAWIDAFTRKGERCVPMSMGVM 152

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ V V  GP       +K+V+  +S  +VE+ I GR    ++    V +
Sbjct: 153 EGDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSR 203


>gi|185178827|ref|ZP_02964615.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024461|ref|ZP_02997110.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518411|ref|ZP_03003907.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|225550802|ref|ZP_03771751.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551181|ref|ZP_03772127.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209462|gb|EDU06505.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018757|gb|EDU56797.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998114|gb|EDU67211.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|225378996|gb|EEH01361.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379956|gb|EEH02318.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 257

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 52/225 (23%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49
           T +WYIV V S  E+K +E+I  +L+  G    ++++ I  E++  V+            
Sbjct: 23  THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82

Query: 50  -----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
                                   E   F GY+ +KA MTD+++  I++T  V G +G+ 
Sbjct: 83  NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142

Query: 93  ENPSPV-----------------------TDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
                                         D +     N V            FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +    F      +  +D+ K    VE   FGR+  ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247


>gi|223985913|ref|ZP_03635949.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM
           12042]
 gi|223962100|gb|EEF66576.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM
           12042]
          Length = 171

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 14/179 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V    E+K  +                   IP  +VV  ++G     E+  FP
Sbjct: 1   MNWYVLFVRGGMEEKIRDFFL---------SQGLNAFIPKMKVVFRKQGISELVEKIMFP 51

Query: 63  GYVLIKAV-----MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           GY+ I++      M +++         ++  L   +  +P   SE +  + ++    +  
Sbjct: 52  GYLFIESELEQAAMDEQIKELRMQKTGIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVL 111

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             S     G +V +++GP   F   +  +D  K R  +E+ + G+   V ++   V+KI
Sbjct: 112 EHSTGLIQGNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQKI 170


>gi|255018875|ref|ZP_05291001.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL F2-515]
          Length = 78

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
             E + I+  +    +R  +   FE+GE V V +GPFA F+G V  +D +K +  V V +
Sbjct: 4   PEEADRILKSMGMVEKR--AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNM 61

Query: 160 FGRVTPVELAYNQVEKI 176
           FGR TPVE+ +NQ+EK+
Sbjct: 62  FGRETPVEVDFNQIEKL 78


>gi|330967921|gb|EGH68181.1| transcriptional activator RfaH [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 170

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E +              E   P          +    E   FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRR---------QNFECFRPLRAAAKKIAAKAQAEEA-LFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P   + F
Sbjct: 59  YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPVLRF 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G++V ++ G +     I    D    R  + + +  R   V L  + + +I
Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166


>gi|309379175|emb|CBX22306.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 124

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY+VQ YS  EK    ++  R++R  +      I +P E+VV +R GR+  SER+ 
Sbjct: 1   MSKKWYVVQAYSWFEKNVQRTLEERIAREEMVDYFGHILLPVEKVVDIRNGRQTISERKS 60

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           +P YVL++  M+D  ++ +K TP+V GF+G     P P++  E E I+ QV+   ++P  
Sbjct: 61  YPVYVLVEMEMSDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120

Query: 120 SVF 122
            V 
Sbjct: 121 KVE 123


>gi|330943991|gb|EGH46181.1| transcriptional activator RfaH [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 170

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E +              E   P +        R        FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGTRVQT-GEPLFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I        ++ I+ T  V   +  G +P PV D  IE I  ++      P     F
Sbjct: 59  YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA----TPAPKAQF 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ V ++   +     I  + D    R  + + +  R   V L  + + +I
Sbjct: 115 TQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSRI 166


>gi|188524233|ref|ZP_03004287.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273402|ref|ZP_03205938.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|195659836|gb|EDX53216.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249922|gb|EDY74702.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
          Length = 257

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 52/225 (23%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49
           T +WYIV V S  E+K +E+I  +L+  G    ++++ I  E++  V+            
Sbjct: 23  THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82

Query: 50  -----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92
                                   E   F GY+ +KA MTD+++  I++T  V G +G+ 
Sbjct: 83  NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142

Query: 93  ENPSPV-----------------------TDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
                                         D +     N V            FEV ++V
Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRTLVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +    F      +  +D+ K    VE   FGR+  ++L +N ++
Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247


>gi|294140235|ref|YP_003556213.1| transcriptional activator rfaH [Shewanella violacea DSS12]
 gi|293326704|dbj|BAJ01435.1| transcriptional activator rfaH, putative [Shewanella violacea
           DSS12]
          Length = 180

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +AV           L     E  +P+       KG+ +      FP
Sbjct: 2   KAWYLLYCKPRGEARAV---------HNLTLQEIETYLPTIGEEKRVKGQIIVKRIPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----------- 111
           GY+ I           I  T  V   +G  E  + V DS I  I  +             
Sbjct: 53  GYLFIYFDPQITSVARIHSTRGVGRIVGCKELMTTVDDSIIHSIKMREHKLLSELLPELK 112

Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                A + P + V F  GE++  ++GPFA   GI +  + +K R HV   I G+   V 
Sbjct: 113 LEGADAQELPATEVEFSPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFDIMGQQKRVS 171

Query: 168 LAYNQVEKI 176
           ++   ++ I
Sbjct: 172 VSKRIIKPI 180


>gi|320161352|ref|YP_004174576.1| putative RfaH family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995205|dbj|BAJ63976.1| putative RfaH family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
          Length = 178

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 13/178 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +WY +Q   N E    +++  +    G++    +I +            +    R +
Sbjct: 1   MSKKWYAIQSKPNKE----QALCEQFQSRGIEVFYPQIRV-------NPVNPRARKIRPY 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+ +   + +     I+  P   G +     P+ V D+ IE I  +V+   +     
Sbjct: 50  FPGYLFVHVDLDEVGLSVIRWIPFARGVVSFSNEPASVPDNLIEAIRRRVDEVNRAGGEL 109

Query: 121 VFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF-GRVTPVELAYNQVEKI 176
           +   + GE V + +GPFA +  I       K RV V + +   R  PVE+    ++ +
Sbjct: 110 LETLKPGEPVLIQEGPFAGYEAIFDVRLSGKERVRVLIQLLSQRYIPVEMQVGSLKPL 167


>gi|56459699|ref|YP_154980.1| transcription antiterminator RfaH [Idiomarina loihiensis L2TR]
 gi|56178709|gb|AAV81431.1| Transcription antiterminator RfaH [Idiomarina loihiensis L2TR]
          Length = 165

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYIV+     E++A+           L++    +  P   V  VR+G + +   R FPGY
Sbjct: 9   WYIVRTKPKQEERAI---------LNLENQGFGVFAPELTVKKVRRGVRTSVVERMFPGY 59

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +K     + ++ ++ T  V G L  G+N   V    I+ +       V +       +
Sbjct: 60  VFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQMRG-----VDQLTDEQAPQ 114

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +G+ V +  GPF  F   +  +D E SR  V +    +      +Y +++
Sbjct: 115 IGDTVEIQQGPFRGFLAKIVKLDGE-SRCFVMLEWMQKEVKANFSYKELQ 163


>gi|13358146|ref|NP_078420.1| transcription antitermination factor [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|170762353|ref|YP_001752666.1| transcription termination/antitermination factor NusG [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|171920320|ref|ZP_02931664.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508497|ref|ZP_02958026.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701857|ref|ZP_02971518.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11357058|pir||A82874 transcription antitermination factor UU581 [imported] - Ureaplasma
           urealyticum
 gi|6899590|gb|AAF30995.1|AE002156_10 transcription antitermination factor [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|168827930|gb|ACA33192.1| transcription termination/antitermination factor NusG [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|171902739|gb|EDT49028.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675925|gb|EDT87830.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701156|gb|EDU19438.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 258

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 52/224 (23%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------- 49
            +WYIV V S  E+K +E+I  +L+  G    ++++ I  E++  V+             
Sbjct: 24  HQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMKN 83

Query: 50  ----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
                                  E   F GY+ +KA MTD+++  I++T  V G +G+  
Sbjct: 84  RANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSSG 143

Query: 94  N------------PSPVTDSEIEHIMNQVEAAVQRPVSS-----------VFFEVGERVC 130
                           + D++ +  +  +   V    +              FEV + V 
Sbjct: 144 KNVKPIPVPEDKILKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEVDQEVK 203

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +    F      +  +D+ K    VE   FGR+  ++L +N ++
Sbjct: 204 IIADTFFGEIAKIAKIDQNKKIATVEFEFFGRINTLDLNFNDIQ 247


>gi|269960688|ref|ZP_06175060.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834765|gb|EEZ88852.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 166

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  + +G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTFEVEKILRGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV  +        + +++ T  V+ F+  G  P  +    +  +    +   ++     
Sbjct: 53  CYVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEIQGDLVYELKQLDKCVDEQASDEC 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G++V V  G FA  + I +  D EK R  + V +  +  PV +  + +
Sbjct: 113 MPQPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163


>gi|269137513|ref|YP_003294213.1| transcriptional activator RfaH [Edwardsiella tarda EIB202]
 gi|267983173|gb|ACY83002.1| transcriptional activator RfaH [Edwardsiella tarda EIB202]
 gi|304557587|gb|ADM40251.1| Transcriptional activator RfaH [Edwardsiella tarda FL6-60]
          Length = 163

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 14/177 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E          L         P   +  V +G++   +   
Sbjct: 1   ME-SWYLLYCKRGQLTRARE---------HLTRQEIPCVTPMITLEKVVRGKRTQVQEPM 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         T++ T  V  F+  G+ P+ V  S ++ +M         P + 
Sbjct: 51  FPNYMFIELDPERIHTTTVQSTRGVSHFVRFGKLPATVPFSIVKQLMMAPTPTAIAPQTP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +    G+RV ++ G F+    I +  D EK R  + + +  +     L+ +  EKI+
Sbjct: 111 I---PGDRVRITQGAFSGMEAIYRESDGEK-RAILLLNLLNQEVSHTLSNSAFEKIL 163


>gi|90417218|ref|ZP_01225145.1| transcriptional activator RfaH [marine gamma proteobacterium
           HTCC2207]
 gi|90330994|gb|EAS46255.1| transcriptional activator RfaH [marine gamma proteobacterium
           HTCC2207]
          Length = 169

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 12/173 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W+++Q  S  E +AVE++              +   P  +V  + +G +V  E   
Sbjct: 1   ME-SWFLLQTKSKQEGRAVENLER---------QGVKSFCPMIKVEKLSRGSRVVKEEAL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FPGY+ +    +     T++ T  V  F+ +   P  V +S I  +M +   A      S
Sbjct: 51  FPGYLFVNFDQSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRT-DAGNDETVS 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                GER+ + DGPF   N +    D ++ R  V + +  +     L +  +
Sbjct: 110 SLPSKGERLQIIDGPFRGLNAVFSQPDGDR-RAIVLINLLNQQVSASLPFASL 161


>gi|328955784|ref|YP_004373117.1| NusG antitermination factor [Coriobacterium glomerans PW2]
 gi|328456108|gb|AEB07302.1| NusG antitermination factor [Coriobacterium glomerans PW2]
          Length = 181

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 4/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV+   E   VE +   +  S LD    E   P         G      +   PGY
Sbjct: 2   WYVIQVFKGRESAMVEYVKRMVPASVLD----ECFSPRFETEIKVGGEWTRCVKTLLPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           ++  A   DK+   +  T + +  +  G    P+ + E   I    +   +    S+  +
Sbjct: 58  IIAIATGPDKLSRHLYGTLEFVRLVKQGGRFWPLQEEERNLIARFTKKGSRTVPMSIAVK 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ V V  GP     G++K++D  KS   +EV I GR     +    + +
Sbjct: 118 DGDNVIVKSGPLMGHEGLIKSIDRRKSIATLEVEICGRKVRTRVGLGVLTR 168


>gi|47570852|ref|ZP_00241389.1| transcription termination/antitermination factor nusG [Bacillus
           cereus G9241]
 gi|47552480|gb|EAL10994.1| transcription termination/antitermination factor nusG [Bacillus
           cereus G9241]
          Length = 140

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 15  EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
           E K   ++  R+   G+   +  + +P E  V ++ G++   +R+ FPGYVL++ +MTD 
Sbjct: 1   ENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDD 60

Query: 75  VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFFEVGERVCVSD 133
            ++ +++TP V GF+G+  + S  +    E ++  ++   +   V    FE+ E V V++
Sbjct: 61  SWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVVDFDFELHETVRVNE 120

Query: 134 GPFASFNGIVKNVDEEKSRV 153
           GPFA + G ++ +D EK +V
Sbjct: 121 GPFADYTGAIEEIDVEKKKV 140


>gi|218778281|ref|YP_002429599.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
 gi|218759665|gb|ACL02131.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01]
          Length = 178

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 12/173 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T +WY +   S  E      +  R           E   P  R++S RK R+   +   F
Sbjct: 9   TKQWYALYTKSRHEACVNNYLAARS---------IESFYPQMRILSRRKDRRKMIDVPMF 59

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ ++A +  + + +I   P  +  +G       + +  I  +  ++ +  +   +  
Sbjct: 60  PGYLFVRAALRSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSL--RIVSQKEALETGP 117

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +  G+ V +  GPFA   G+    ++   ++ V +   G+   VE+    V+
Sbjct: 118 CYHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169


>gi|149189138|ref|ZP_01867426.1| transcriptional activator RfaH [Vibrio shilonii AK1]
 gi|148837101|gb|EDL54050.1| transcriptional activator RfaH [Vibrio shilonii AK1]
          Length = 163

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 13/172 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P   V  + +G++ N +   FP
Sbjct: 2   KRWYLLYCKRG---------EQARAKMHLENQGLECYYPEISVEKILRGKRQNVKEPLFP 52

Query: 63  GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV +K        + T++ T  V+ F+  G  P  +    I  + + V      P  + 
Sbjct: 53  SYVFVKFDYEVGPSFTTVRSTRGVVDFIRFGAQPKEINGDLIFELRSMVHC--DEPDCAD 110

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + GE V V  G FA    I +  D E +R  + V +  +  PV +    +
Sbjct: 111 LPDKGECVRVIGGQFAGIEAIFQEADGE-ARSIMLVNLINKQVPVSIDNKDL 161


>gi|325105016|ref|YP_004274670.1| NusG antitermination factor [Pedobacter saltans DSM 12145]
 gi|324973864|gb|ADY52848.1| NusG antitermination factor [Pedobacter saltans DSM 12145]
          Length = 169

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY +      EKK  E++              E+ +PS++++     RK   +   F 
Sbjct: 8   HRWYPIYTKPRFEKKVAENLLK---------QGIEVYLPSQKILKQWSDRKKWVDEPLFK 58

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV I        Y  +  TP V+ F+      + V D E+  +   +        +  F
Sbjct: 59  SYVFIHINY--LQYDQVVRTPGVVRFIYFSGKIASVPDMEMNFLQTYLSGDFTVETTGQF 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            + G++V +  G F  +   + +   EK R+ + +   G+   + +    V
Sbjct: 117 IKSGDKVKIVSGKFKGYEAEMVSYQNEK-RLILRIDALGQSILLNIPVADV 166


>gi|308271745|emb|CBX28353.1| hypothetical protein N47_G36770 [uncultured Desulfobacterium sp.]
          Length = 170

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P WY++   S  E              GL     E  +P   V S R  RK+      FP
Sbjct: 7   PSWYVIHTKSRFENVV---------HEGLIKKNVESFLPKVLVRSRRVDRKIMIRVPLFP 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ +K+ +  +    I  T  V+  +G    P  V D E    +  + A   +  + V 
Sbjct: 58  GYMFVKSDLRPERQIEIFKTVGVVRMVGNRSGPISVPD-ETIASLKIMTAGEGKIFTGVK 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           F  G+ V V  GPF    G       +  RV V++   G+   VE+  + +E
Sbjct: 117 FRKGDMVLVIRGPFEGVTGTFNRH-GKIGRVVVDIEALGQFASVEVDEDDIE 167


>gi|149376808|ref|ZP_01894565.1| Transcriptional activator RfaH [Marinobacter algicola DG893]
 gi|149358929|gb|EDM47396.1| Transcriptional activator RfaH [Marinobacter algicola DG893]
          Length = 163

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY +Q   +   +A+           L +       P   V  ++ G++       FP
Sbjct: 1   MTWYALQHKPSQGDRALT---------HLQNQDIACFYPKITVEKIKAGKRTKQLEPLFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ +    TD ++  ++ T  ++  +     P+ + D  I+HI + +    ++      
Sbjct: 52  GYLFVNLEQTDPMWAKLRSTRGILRIVSFANKPAAIPDDVIQHIKDSLHTVAEQ----GG 107

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
            + G+ V + +GPF     I +  D E  R  V +    +   V++  +
Sbjct: 108 IKPGQAVELDEGPFKGIEAIFQAYDGE-ERAIVLISFMQKQQTVKVPLS 155


>gi|298704929|emb|CBJ28432.1| putative transcription antitermination protein [Ectocarpus
           siliculosus]
          Length = 823

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 13/181 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+++ ++  E +   S+   L  +GL   V EI +P  +V      +    E   + G
Sbjct: 221 HWYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPCRQVPKQVGTKVTFKEEPIYQG 280

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--------NPSPVTDSEIEHIMNQVEAAVQ 115
           Y+  K  M+ +V   + D  +++GF+G                 D E      +   A +
Sbjct: 281 YIYCKVKMSLEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKASEKALGANK 340

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P       VG+ V +S+GPFA   G V  + + +  V V    FGR + V L ++ V K
Sbjct: 341 IPQL---LGVGDLVEISEGPFALKKGEVSKIKDGEYVVKV--NTFGRNSDVRLDWDGVRK 395

Query: 176 I 176
           +
Sbjct: 396 L 396


>gi|238918124|ref|YP_002931638.1| transcriptional activator RfaH [Edwardsiella ictaluri 93-146]
 gi|238867692|gb|ACR67403.1| transcriptional activator RfaH, putative [Edwardsiella ictaluri
           93-146]
          Length = 163

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 14/177 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E          L        IP   +  V +G++   +   
Sbjct: 1   ME-SWYLLYCKRGQLTRARE---------HLTRQEIPCVIPMITLEKVVRGKRTQVQEPM 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         T++ T  V  F+  G+ P+ V  S ++ +M         P + 
Sbjct: 51  FPNYMFIELDPERIHTTTVQSTRGVSHFIRFGKLPAIVPFSIVKPLMMTPALTAIAPQTP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           +    G+RV ++ G F     I +  D EK R  + + +  +     L+ +  EKI+
Sbjct: 111 I---PGDRVRITQGAFNGIEAIYRESDGEK-RAILLLSLLNQEVSHTLSNSAFEKIL 163


>gi|309799005|ref|ZP_07693261.1| transcription antitermination protein NusG [Streptococcus infantis
           SK1302]
 gi|308117355|gb|EFO54775.1| transcription antitermination protein NusG [Streptococcus infantis
           SK1302]
          Length = 129

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 3/126 (2%)

Query: 49  RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           + G+K   E   FPGYVL++ VMTD+ +  +++TP V GF+G+  N S  T    + I +
Sbjct: 3   KNGKKKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRD 62

Query: 109 QVEAAVQRPV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
            + +  Q      +  EVG+ V + DG FA + G +  +D   ++V + + +FG  T  E
Sbjct: 63  ILVSMGQTVQEFDIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAE 120

Query: 168 LAYNQV 173
           +  NQ+
Sbjct: 121 VNLNQI 126


>gi|294637995|ref|ZP_06716260.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685]
 gi|291088867|gb|EFE21428.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685]
          Length = 163

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 14/177 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++             +    +R  L         P   +  V +G++   +   
Sbjct: 1   MEA-WYLLYCKRGQ-------LER--AREHLTRQAIPCVTPMIALEKVVRGKRTQVQEPM 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         T++ T  V  F+  G+ P+ V    I+ +M    A    P + 
Sbjct: 51  FPNYMFIELDPERIHTTTVQSTRGVSHFIRFGKRPATVPFRVIKQLMTAPMATAAAPQT- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
                G+RV +  G F+    I +  D EK R  + + +  +     +     EKI+
Sbjct: 110 --PMPGDRVRILQGAFSGLEAIYRESDGEK-RAILLLNLLNQEVSQSVDNGDFEKIL 163


>gi|154686640|ref|YP_001421801.1| putative transcription antiterminator [Bacillus amyloliquefaciens
           FZB42]
 gi|154352491|gb|ABS74570.1| putative transcription antiterminator [Bacillus amyloliquefaciens
           FZB42]
          Length = 176

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 12/180 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY + V S  E+   + +     R   D       IP ++V   + G K  + ++ FP
Sbjct: 1   MKWYALFVESGKEETVQKFL-----RLQFDEQALYSIIPKKKVTERKAGIKYEALKKMFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-------ENPSPVTDSEIEHIMNQVEAAVQ 115
           GYVL K  MT++ +H IK+ P     +  G       +        E    + ++     
Sbjct: 56  GYVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGD 115

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               S  +    +V V+ GP     GI+K +D+ K R  + +   G    V +    + K
Sbjct: 116 TVDYSKVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLSK 175


>gi|196231071|ref|ZP_03129931.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
 gi|196224901|gb|EDY19411.1| NusG antitermination factor [Chthoniobacter flavus Ellin428]
          Length = 186

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 10/174 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY ++     E  A   +               +  P  R+    +   V      F
Sbjct: 17  EAKWYCLRAQPKHEHIAAARLRQCEEIQ--------VFCPRVRIQRSTRRGLVWFTEALF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+  +       +  ++    V G +  G++   V    ++ +   +    +    S 
Sbjct: 69  PNYLFARFEWVQS-HALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYM-EDAELKTVSF 126

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + G+ V + +GPF   NG+VK +   + RV V + + G  T V+L    V K
Sbjct: 127 NIDEGDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180


>gi|317494886|ref|ZP_07953297.1| transcriptional activator RfaH [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917211|gb|EFV38559.1| transcriptional activator RfaH [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 162

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E          L         P   +  + +G++   +   FP Y
Sbjct: 4   WYLLYCKRGQLERAKE---------HLSRQEIPCFTPMITLEKIVRGKRTQVKEPMFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I+         T++ T  V  F+  G  P  +     + I   + A     V      
Sbjct: 55  MFIELDPERVHTTTVQSTRGVSHFVRFGALPVTIP---FKVIKQLMMAPPTECVDPDTPA 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V ++ G F  F  I    D EK R  + + +  +     +     EK+
Sbjct: 112 PGDTVVITSGAFEGFEAIYTEADGEK-RAILLLNLLNKPVQQSVENTDFEKL 162


>gi|262394904|ref|YP_003286758.1| transcriptional activator RfaH [Vibrio sp. Ex25]
 gi|262338498|gb|ACY52293.1| transcriptional activator RfaH [Vibrio sp. Ex25]
          Length = 166

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  + +G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV           + +++ T  V+ F+  G  P  V    +  +M   +   +   S  
Sbjct: 53  CYVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNENTASEC 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+++ V  G FA  + I +  D EK R  + V +  +  PV +  + +
Sbjct: 113 MPKPGDQIRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163


>gi|308048785|ref|YP_003912351.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799]
 gi|307630975|gb|ADN75277.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799]
          Length = 163

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 12/165 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E  A   +  R     L   + E  +       +++G++       FP Y
Sbjct: 4   WYLLYCKGKKEATARAYLEQR----NLSCFLPEAEVEC-----IKRGKRTLVTAPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         T+   P V   + T    +P+  + +  I  +++             
Sbjct: 55  LFVRFDPFQTPITTVMSAPGVASVVRTDGKIAPIETAIVVAIRERLKR--AAVSLMDAPT 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            G+ V + DGPFA+  GI +  D +K  + + + I G+  P+ + 
Sbjct: 113 AGDTVEILDGPFANLQGIFREPDGDKRSL-LLLEILGQQKPISME 156


>gi|218458943|ref|ZP_03499034.1| transcription antitermination protein NusG [Rhizobium etli Kim 5]
          Length = 51

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           GE+V VSDGPFASFNG V++V EE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 1   GEQVRVSDGPFASFNGTVQDVAEERSRLKVEVSIFGRATPVELEYAQVEKV 51


>gi|77459037|ref|YP_348543.1| transcription antitermination protein nusG [Pseudomonas fluorescens
           Pf0-1]
 gi|77383040|gb|ABA74553.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf0-1]
          Length = 178

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P WY++Q     +++A  ++               +  P      V +G++   +   FP
Sbjct: 9   PNWYLLQCKPRQDERAHLNLLQ---------QNYVVFHPQLVSERVIRGKRQRVQESLFP 59

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ I+    D  +  ++ T  V  F+     P+ V +  IEH+  +   +         
Sbjct: 60  GYLFIQLSRDD-NWAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSEPDE-A 117

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + GE + +  GP A   G+   +     RV + +    R  PV L  + +E+
Sbjct: 118 LKPGENLQIVSGPLAPLEGVFLGLHG-TDRVMILLQFLNREQPVCLPLSVIER 169


>gi|150388252|ref|YP_001318301.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|150389724|ref|YP_001319773.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|150392051|ref|YP_001322100.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149948114|gb|ABR46642.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149949586|gb|ABR48114.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149951913|gb|ABR50441.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF]
          Length = 162

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 9   QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
            V SN E KA + +   +          ++ +P   +   R+G   + ++  F GY+ + 
Sbjct: 2   HVKSNEEMKAKKLVEKEIED-------IKVIVPQRIIPEKRQGETRHVKKILFTGYLFLN 54

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
             +    Y+ +K  P +  FLG  E P  +   E++ ++          +S V  + G +
Sbjct: 55  VELDVDTYYKLKRIPSIHRFLG-LEKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEGNK 113

Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           V V  GP     G +  VD+ K R  V + + G    V+L    ++
Sbjct: 114 VQVVSGPLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIK 159


>gi|302188213|ref|ZP_07264886.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae
           642]
          Length = 170

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 15/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E +              E   P  +  + + G +  ++   FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQADAKKTGIRGQADEPLFPG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I        ++ I+ T  V   +  G +P PV D  IE I  ++      P     F
Sbjct: 59  YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA----TPAPKTQF 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ V ++   +     I  + D    R  + + +  R   V L  + +  I
Sbjct: 115 ARGDAVLITHASWGDVEAIFLSEDG-TQRAVILLNMLQRQQKVVLPISSLSLI 166


>gi|119947068|ref|YP_944748.1| NusG antitermination factor [Psychromonas ingrahamii 37]
 gi|119865672|gb|ABM05149.1| NusG antitermination factor [Psychromonas ingrahamii 37]
          Length = 169

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 11/177 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ +W++V   S  E +A  ++          +       P      + + +K   E   
Sbjct: 1   MSLQWFVVYCKSREELRAQRNLE---------NQGVYSFFPKICKEKILRSKKKVVEEPL 51

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
           FP Y+ +     D+ +  I+ T  +  F+  G + + + D +I+ I        +    S
Sbjct: 52  FPSYLFVNISKNDEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNS 111

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              ++ G+++ +  GPF     I  N+++   R  + + I  +   +    + ++K+
Sbjct: 112 EDVYQNGDKIEILSGPFKGLTAIF-NIEDGLERSMLLLKILNQDNNISFKNSALKKV 167


>gi|297519742|ref|ZP_06938128.1| transcription antitermination protein NusG [Escherichia coli OP50]
          Length = 114

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 71/108 (65%), Gaps = 1/108 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQ 109
           GYVL++ VM D  +H ++  P+V+GF+G   + P+P++D E++ IMN+
Sbjct: 67  GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114


>gi|91225922|ref|ZP_01260891.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01]
 gi|269966032|ref|ZP_06180123.1| transcriptional activator RfaH [Vibrio alginolyticus 40B]
 gi|91189572|gb|EAS75848.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01]
 gi|269829339|gb|EEZ83582.1| transcriptional activator RfaH [Vibrio alginolyticus 40B]
          Length = 166

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  + +G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV           + +++ T  V+ F+  G  P  V    +  +M   +      VS  
Sbjct: 53  CYVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNDNTVSEC 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+++ V  G FA  + I +  D EK R  + V +  +  PV +  + +
Sbjct: 113 MPKPGDQIRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163


>gi|91203041|emb|CAJ72680.1| similar to transcription antitermination protein NusG [Candidatus
           Kuenenia stuttgartiensis]
          Length = 169

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M      W+ V   S  EK+    +                 +P  + +S R+ RK   +
Sbjct: 1   MEKNVAYWFAVHTRSRHEKQVDSFLRE---------KNISSFLPLVKTISRRRDRKKFID 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQ 115
              FPGY+ +   + +     IK T  V+  +G  ++    P+ D+EI ++   + + V 
Sbjct: 52  VPLFPGYLFVNITLDNLYE--IKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLINSNVA 109

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                 + + G +V V  GP     G++        RV V + I  + T  E++   +E 
Sbjct: 110 IDPYK-YLQKGTKVRVVSGPLIGLEGLLVKRKT-NYRVVVSIDILQKSTSAEISIADIES 167

Query: 176 I 176
           I
Sbjct: 168 I 168


>gi|163802557|ref|ZP_02196449.1| transcriptional activator RfaH [Vibrio sp. AND4]
 gi|159173640|gb|EDP58459.1| transcriptional activator RfaH [Vibrio sp. AND4]
          Length = 166

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  + +G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTLEVEKILRGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV  +        + +++ T  V+ F+  G  P  V    I  +    +       +  
Sbjct: 53  CYVFARFDYEKGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLIYELKQLDKCVDDHTDAKN 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G+ V V  G FA  + I +  D EK R  + V +  +  PV +  + +
Sbjct: 113 MPKPGDEVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163


>gi|153834091|ref|ZP_01986758.1| transcriptional activator RfaH [Vibrio harveyi HY01]
 gi|148869556|gb|EDL68551.1| transcriptional activator RfaH [Vibrio harveyi HY01]
          Length = 166

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  + +G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV  +    +   + +++ T  V+ F+  G  P  V    +  +    +    +  +  
Sbjct: 53  CYVFARFDYEEGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVYELKQLDKCIDDQTDAEN 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G++V V  G FA  + I +  D EK R  + V +  +  PV +  + +
Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163


>gi|3810894|dbj|BAA34066.1| transcription antitermination protein [Vibrio alginolyticus]
          Length = 113

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 72/107 (67%), Gaps = 1/107 (0%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+VQ +S  E +  +S+   +   G++ L  E+ +P+E VV +R G++  SER+FFP
Sbjct: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMN 108
           GYVL++ +M D+ +H ++  P+V+GF+G   + P+P+TD E + I+N
Sbjct: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILN 113


>gi|163750517|ref|ZP_02157755.1| transcriptional activator rfaH, putative [Shewanella benthica KT99]
 gi|161329672|gb|EDQ00661.1| transcriptional activator rfaH, putative [Shewanella benthica KT99]
          Length = 180

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +AV           L     E  +P+       KG+ +      FP
Sbjct: 2   KAWYLLYCKPRGEARAV---------HHLTLQEIETYLPTIGEEEKVKGQVIVKRIPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA---------- 112
           GY+ I           I  T  V   +G  E+ + V D+ I  I  +             
Sbjct: 53  GYLFIYFDPQITSVARIHSTRGVGRIVGCKESMTTVDDNIIHSIKMREHKLLSELLPEYK 112

Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
                + + PV+ + F  GE++  ++GPFA   GI +  + +K R HV   I G+   + 
Sbjct: 113 AEGAGSDELPVTDIEFTPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFEIMGQQKRIS 171

Query: 168 LAYNQVEKI 176
           +    ++ I
Sbjct: 172 VPKKSIKPI 180


>gi|156935836|ref|YP_001439752.1| transcriptional activator RfaH [Cronobacter sakazakii ATCC BAA-894]
 gi|156534090|gb|ABU78916.1| hypothetical protein ESA_03719 [Cronobacter sakazakii ATCC BAA-894]
          Length = 184

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +GR+ +     FP Y
Sbjct: 26  WYLLYCKRGQLQRAKEHLERQSVN---------CLTPMITLEKMVRGRRTSVSEPLFPNY 76

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++    D    TI  T  V  F+  G +P+ V  + IE +++     V  P +     
Sbjct: 77  LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDT---PH 133

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +   +  K+
Sbjct: 134 TGDMVVITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTEFRKV 184


>gi|70728935|ref|YP_262171.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5]
 gi|68343234|gb|AAY90840.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5]
          Length = 239

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 66/172 (38%), Gaps = 16/172 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQ     + +A E++                  P      V +GR+ +     FPGY
Sbjct: 84  WYLVQCKPRQDLRAEENLRR---------QGFHCYRPQRGCERVVQGRRQSGTESLFPGY 134

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I     D  +  ++ T  V   +     P  V  S IE +  +V              
Sbjct: 135 LFIALEH-DASWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLRQRVTDMDTSLPYK---- 189

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G RVC+++G FA    I ++   +  RV + + +  +   +EL  + + KI
Sbjct: 190 -GTRVCITEGCFADLEAIFESSIGD-ERVVLLLTLLNQQRRIELPLSSIRKI 239


>gi|160901844|ref|YP_001567425.1| NusG antitermination factor [Petrotoga mobilis SJ95]
 gi|160359488|gb|ABX31102.1| NusG antitermination factor [Petrotoga mobilis SJ95]
          Length = 354

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 46  VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105
                      ++  FPGYV ++ +   +    + + P V   L  G  P  +  +E+  
Sbjct: 218 FHKEIKIIKTKKKNLFPGYVFVEMMYIKETEELVSNLPYVSTILNIGGKPVKLNKNEVRF 277

Query: 106 IMNQVEAAV----QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           ++  +        Q       FE+GE V + +GPF  F G +K+ D EK  V V V +FG
Sbjct: 278 VLRVMGEEAYQKRQVKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFG 337

Query: 162 RVTPVELAYNQVEKIV 177
           R T V L+  ++EKI+
Sbjct: 338 RETTVTLSLGEIEKII 353



 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
          M   WY++QVYS  E K  E++  R+   G +    +I IP    ++    R     
Sbjct: 1  MRKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIPEVDELNYSNKRVQKIY 57


>gi|271498773|ref|YP_003331798.1| NusG antitermination factor [Dickeya dadantii Ech586]
 gi|270342328|gb|ACZ75093.1| NusG antitermination factor [Dickeya dadantii Ech586]
          Length = 162

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++        +A E +                  P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G  P+ V    IE + +        P +    +
Sbjct: 55  LFVEFDPEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIEDLQHHQCTTHVDPET---PQ 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F+    I    D E +R  + + +  +     +   Q  K+
Sbjct: 112 PGDQVTITEGVFSGLEAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRKV 162


>gi|307133036|ref|YP_003885052.1| transcription antiterminator protein [Dickeya dadantii 3937]
 gi|4163101|emb|CAA10615.1| transcriptional activator [Erwinia chrysanthemi]
 gi|306530565|gb|ADN00496.1| transcription antiterminator protein [Dickeya dadantii 3937]
          Length = 162

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 13/171 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++        +A E +                  P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G  P+ V    I+ ++    A    P      +
Sbjct: 55  LFVEFDPEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIDDLLQHPCATHIDPEM---PQ 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G++V +++G F+    I    D E +R  + + +  +     +   Q  K
Sbjct: 112 PGDQVTITEGVFSGLQAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRK 161


>gi|310642839|ref|YP_003947597.1| nusg antitermination factor [Paenibacillus polymyxa SC2]
 gi|309247790|gb|ADO57357.1| NusG antitermination factor [Paenibacillus polymyxa SC2]
          Length = 173

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V +  E++  +           D  V +  IP +  +    G         FP
Sbjct: 1   MNWYVLFVRTGREERVKQLFNKW-----FDSEVYKPFIPIQERLFKVAGTVKKELAPLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVI-----GFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            YV I++ + D  + T  ++           L   +  + + D E   ++  +       
Sbjct: 56  SYVFIESNLPDLQFVTSTNSMIYTSSDIIRLLRYSKLEASMRDCER-QVLESLCNDRYCI 114

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             S     G+ + + +GP    + IVK +D  K +  +++   G +  V +A   + K+
Sbjct: 115 ECSTGIIEGDNIRIIEGPLKGRSSIVKKIDRHKRQAVIQLEFMGDIRLVNVALEIISKV 173


>gi|194335749|ref|YP_002017543.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308226|gb|ACF42926.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
          Length = 196

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 11/164 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V V S  EKK  + +                 +P          RK       F GY
Sbjct: 9   WYAVYVRSRYEKKVYQLLLE---------QGVVSFLPLLDTWKQWSDRKKRVSEPLFRGY 59

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +   +  +    + DT  V+ F+G G  PS +   +I+ +   V          V   
Sbjct: 60  VFVNIDLVREKIRVL-DTEGVVKFIGIGRVPSVIVQRDIDWLKQLVREPDAIHRHVVSLP 118

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
            G+RV V  GPF  F G+V     E SR+ V      +   V +
Sbjct: 119 AGQRVKVLAGPFKDFEGVVVKQGRE-SRLVVFFESIMQGVEVTI 161


>gi|156973628|ref|YP_001444535.1| transcriptional activator RfaH [Vibrio harveyi ATCC BAA-1116]
 gi|156525222|gb|ABU70308.1| hypothetical protein VIBHAR_01331 [Vibrio harveyi ATCC BAA-1116]
          Length = 166

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                  ++  L++   E   P+  V  +  G++   E   FP
Sbjct: 2   KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILHGKRQKVEEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            YV  +    +   + +++ T  V+ F+  G  P  +    +  +    +    +  +  
Sbjct: 53  CYVFARFDYEEGPNFTSVRSTRGVVDFVRFGVQPKEIQGDLVYELKQLDKCIDDQTDAES 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             + G++V V  G FA  + I +  D EK R  + V +  +  PV +  + +
Sbjct: 113 MLKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163


>gi|119775400|ref|YP_928140.1| transcriptional activator rfaH [Shewanella amazonensis SB2B]
 gi|119767900|gb|ABM00471.1| transcriptional activator rfaH, putative [Shewanella amazonensis
           SB2B]
          Length = 167

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 10/174 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A +++    S   L+  + +      + V    G    SE   FP
Sbjct: 2   KAWYLIYCKPRNEMRAQQNL----SMQNLETYLPKH----RKQVKASGGAVSVSESVLFP 53

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         +I  T  V   +G  E  +P+ D+ I   + + E  V++      
Sbjct: 54  NYLFVQFDPEVTSVRSIHATRGVSRIVGCSEQMTPIDDALI-RALKRKELQVEKLACEKP 112

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              GERV    GPF+    I    D  K R  V     G+   +++  + + +I
Sbjct: 113 LAAGERVKFCAGPFSDLEAIFLESDGNK-RCQVLFEFMGQQKQLDVESSSIVRI 165


>gi|294085518|ref|YP_003552278.1| hypothetical protein SAR116_1951 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665093|gb|ADE40194.1| hypothetical protein SAR116_1951 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 172

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 10/172 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W   Q+  N   KA  ++         D        P +R       +     ++ FPGY
Sbjct: 11  WVAAQLKPNALAKAQRNL---------DRQGFVYFCPMQRETVRSAAQFRQQTKQLFPGY 61

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
             +           +  T  +   +  G        +++   +          ++     
Sbjct: 62  CFVHMNPASGDVRKLNATHGISRLVSFGAGQISKVPTQLIAALQNRCDETNCLIAPASLA 121

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+ V +  G FA F G V+ + +   R+ +     G+ + V++    +EK+
Sbjct: 122 VGDEVRILSGAFAEFVGTVETISKS-DRLRILFDFMGQKSHVDMPQQNLEKL 172


>gi|308069775|ref|YP_003871380.1| hypothetical protein PPE_03019 [Paenibacillus polymyxa E681]
 gi|305859054|gb|ADM70842.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 173

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 11/179 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+  V +  E++  + I        LD  V +  IP +  +    G         FP
Sbjct: 1   MSWYVFFVRTGREEQVKQLINEW-----LDSEVYKPFIPLQERLFKVAGIVKKEWAPLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVI-----GFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            YV I++ + D  + T  ++           L   +  + + DSE   ++  +       
Sbjct: 56  SYVFIESNLPDLQFVTSTNSMICTSSDIIRLLRYSKYEASMRDSEK-QMLESLCNDSYCI 114

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            SS     G+ + + DGP      IVK +D  K +  +++   G +  V +A   + K+
Sbjct: 115 ESSTGIIEGDNIRILDGPLKGRGSIVKKIDRHKRQAVIQLEFMGDIRLVRVALEIISKV 173


>gi|312960453|ref|ZP_07774962.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6]
 gi|311285338|gb|EFQ63910.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6]
          Length = 169

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+VQ  +  +++A          + L                + KG +       F
Sbjct: 9   AKAWYLVQCKARQDERA---------EAHLQRQGYTCFRSICTRERLLKGERRVMTESLF 59

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+    D  +  ++ T  V   +  G +P PV D  ++ +  +      +P+ + 
Sbjct: 60  PGYLFIQLSSQDS-WSPLRSTRGVSRIVAFGGDPLPVGDELVDELQRR----NHQPLVTP 114

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            +  GE V +++GPFA   G+   +  E  R  V + +  R   V L  N V+
Sbjct: 115 LWAPGENVRINEGPFAELEGVFLGMTGE-ERAIVLINLLHREHRVGLPLNAVK 166


>gi|323138187|ref|ZP_08073260.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
 gi|322396649|gb|EFX99177.1| NusG antitermination factor [Methylocystis sp. ATCC 49242]
          Length = 186

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 11/170 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+ Q  +  E  A   +               +  P          +        FPG
Sbjct: 25  RWYVAQTLARREAGAGAQLVA---------QGFAVFTPQVIKTVRHARKLRTVRAPAFPG 75

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +   +    + ++  T  V   +   + P PV    +E ++  V+            
Sbjct: 76  YLFVILDLNRDRWRSVNGTFGVARMIMGEDVPMPVPAGVVETLLGYVDE-AGVCRFDRDL 134

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             G+ V V+ GPFA   G +  +D    RV V + I G   P  L  + +
Sbjct: 135 VEGQAVRVTVGPFAQAIGELVRLDA-NGRVRVLLEIMGGKIPATLERSSL 183


>gi|289577938|ref|YP_003476565.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|297544211|ref|YP_003676513.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527651|gb|ADD02003.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|296841986|gb|ADH60502.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 179

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++      E K  + I              ++ +P  +++   KG+ V   +  FP
Sbjct: 2   KKWYVIFTRGGFENKVKDIIQNCFKEE------VKLLVPKRKIIERVKGQPVEKIKLLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + A M+D++Y+ + +  K   FL  G+ P+ V + E++ I++ ++ +    VS   
Sbjct: 56  GYVFVNAEMSDELYYKMSEVLKRGVFLKEGKRPAFVREEEMKIILSLIKNSDLIDVSKGI 115

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            E GERV + +GP   + G++K +D+ K R  V + I G +  V+LA   +E
Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 166


>gi|253991350|ref|YP_003042706.1| transcriptional activator RfaH [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782800|emb|CAQ85965.1| transcriptional activator rfah [Photorhabdus asymbiotica]
          Length = 162

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A+E++                  P+ R+  + +G++  +    
Sbjct: 1   ME-NWYLIYCKRGQISRAIENLER---------QDVACLTPTARIEKITRGKRTVNTEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G +P+ V ++ I+ I++  E     P + 
Sbjct: 51  FPNYLFVQFDPEVIHTTTINSTRGVSHFVRFGVHPAIVPETLIKEIVSATEQEYVSPDTP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V    G+ V +++G F     I    D E  R  + + I  R  P  L   Q  KI
Sbjct: 111 VA---GDTVLITEGIFEGLQAIYNEPDGET-RSILLLNILNRQLPKALDNKQFVKI 162


>gi|237799523|ref|ZP_04587984.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022379|gb|EGI02436.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 166

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++Q     E +A E          L     E   P +        R+       FPG
Sbjct: 9   RWYLIQTKPRQEARAAE---------HLQRQHFECYRPLQATAKRTVAREAL-----FPG 54

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ I+       ++ I+ T  V   +  G  P PV D+ IE I  ++      P +   F
Sbjct: 55  YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGQPVPVRDALIEQIRQRLS----APSADTRF 110

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ V ++ G  ++   I    D    R  + + +  R   V L  + + ++
Sbjct: 111 TRGDIVLINTGSLSAVEAIFLTADGS-ERAVILLSMLQRQHQVVLPISSLSRV 162


>gi|255283968|ref|ZP_05348523.1| putative transcription antiterminator [Bryantella formatexigens DSM
           14469]
 gi|255265550|gb|EET58755.1| putative transcription antiterminator [Bryantella formatexigens DSM
           14469]
          Length = 183

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 5/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV +  E++       ++S + L+    +  IP   V    +G     ++  FPGY
Sbjct: 17  WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGEWKTQKQILFPGY 72

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +       ++  +K    +   +GTG    P++++E E ++       Q    S    
Sbjct: 73  VFVVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGE-EQVVQMSEGII 131

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G +V +  GP     G ++ +D  K +  +E+ + G +  V++    V K
Sbjct: 132 TGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182


>gi|220923469|ref|YP_002498771.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219948076|gb|ACL58468.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 178

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W++VQ     E++ VE +    +         +  +P  RV +VR+GRKV+   + F
Sbjct: 5   AKTWFVVQTGPARERRVVELLAREGA---------DTWLPLFRVTTVRRGRKVDDFEKVF 55

Query: 62  PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
             YV        M  +    + D   V+  LG         D+                 
Sbjct: 56  ASYVFAGLDEETMRRRGTSVLFDCDHVLDVLGVDRPLPFPADALQVLADRLAGHNRDETE 115

Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
                  +   +VGE   + +GPF SF   V+ V      +   V IFGR+TPVE   +Q
Sbjct: 116 EGRRRTEAAKIQVGEMRRIINGPFMSFFAEVEEV-LSNGIIKAGVRIFGRITPVEFTPDQ 174

Query: 173 V 173
           +
Sbjct: 175 L 175


>gi|330953998|gb|EGH54258.1| transcriptional activator RfaH [Pseudomonas syringae Cit 7]
          Length = 170

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 1   MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M+      RWY++Q     E +A E +              E   P  +V + + G +V 
Sbjct: 1   MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQVDAKKPGTRVQ 50

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           +    FPGY+ I        ++ I+ T  V   +  G +P PV D  IE I  ++     
Sbjct: 51  AGEALFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----A 106

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P     F  G+ V ++   +     I  + D    R  + + +  R   V L  + + +
Sbjct: 107 TPAPKTQFTQGDAVLITHASWGEVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSR 165

Query: 176 I 176
           I
Sbjct: 166 I 166


>gi|254490679|ref|ZP_05103864.1| KOW motif domain protein [Methylophaga thiooxidans DMS010]
 gi|224464135|gb|EEF80399.1| KOW motif domain protein [Methylophaga thiooxydans DMS010]
          Length = 56

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 41/53 (77%)

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE GE V V+DGPF  F G+V+ V+ EKS++ VEVVIFGR TPVEL ++QV K
Sbjct: 3   FEPGEVVRVTDGPFNDFTGVVEEVNYEKSKLRVEVVIFGRSTPVELEFSQVAK 55


>gi|260596064|ref|YP_003208635.1| transcriptional activator RfaH [Cronobacter turicensis z3032]
 gi|260215241|emb|CBA27127.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
          Length = 179

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +GR+ +     FP Y
Sbjct: 21  WYLLYCKRGQLQRAKEHLERQSVN---------CLTPMITLEKMVRGRRTSVSEPLFPNY 71

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++    D    TI  T  V  F+  G +P+ V  + IE +++     V  P +     
Sbjct: 72  LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDT---PH 128

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ V +++G F     I    D E +R  + + +  +     +   +  K
Sbjct: 129 TGDMVVITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTEFRK 178


>gi|330986281|gb|EGH84384.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 170

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             RWY++Q     E +A E +              +   P  +V   +   +V ++   F
Sbjct: 7   EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ I+       ++ I+ T  V   +  G +P PV D  IE I  ++      P    
Sbjct: 57  PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F  G+ V ++   ++    I  + D    R  + + +  R   + L  + + ++
Sbjct: 113 RFIQGDPVMITTSSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166


>gi|114775633|ref|ZP_01451201.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1]
 gi|114553744|gb|EAU56125.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1]
          Length = 172

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 14/170 (8%)

Query: 1   MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M+  +W+ ++V    E  A  ++              E+ +P         G+     R 
Sbjct: 1   MSDKQWFAIRVKPRQESLAAANLER---------QGFEVYLPMINTRISHAGKVSWQPRP 51

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           FF GY+ +   + ++ + TI+ T  V+  +  G    P++D  I  +  + +      VS
Sbjct: 52  FFAGYLFVHLSIDEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVS 111

Query: 120 SVFFEV---GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           S        GE+V + DG      G+   +   + R  + +    +   V
Sbjct: 112 STPESPFRAGEKVRMLDGAMKGLEGVFIEM-RGQDRALILLDWMKKSMRV 160


>gi|331035493|gb|AEC53050.1| NusG antitermination factor [Synechococcus phage S-CRM01]
          Length = 193

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 22/192 (11%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY VQV + CEKKA+  +  R S  G D  + ++ +P   VV+V    +K +++    
Sbjct: 5   KDWYCVQVAAGCEKKAMADLKARKSVLG-DIFIQDVEVPQHTVVTVDDKGKKKSTKTNIL 63

Query: 62  PGYVLIKA---------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
           PGY+L++                V     +  I+ T  V+GF G  +    V  +     
Sbjct: 64  PGYILVQVKKEKIETEEEGVFVEVFPASSHDIIRSTFNVLGFAGPDKKKPRVMPASEVRT 123

Query: 107 MNQVEAAVQRPVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
           +        +   +     ++VG+++ V +GPF   N IV ++  +K  V  EV +FGR+
Sbjct: 124 IFSQVDDAYKETKTNLLADYKVGDKLTVINGPFEGKNIIVDSIRGDK--VTAEVDMFGRI 181

Query: 164 TPVELAYNQVEK 175
           T VE +  Q+ K
Sbjct: 182 TTVEFSKEQLLK 193


>gi|298385535|ref|ZP_06995093.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298261676|gb|EFI04542.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 192

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E +       G+++      IP ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVSEYLDK----MGIEN-----FIPLQQEMHQWSDRRKLIESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  V + A   ++V      T      +    NP+ + D ++      ++ + +    S 
Sbjct: 75  PMMVFVHADPKERVEVLSLSTVSRYMVMRGESNPAVIPDEQMARFRFMLDYSKEAVCMSS 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G + +VD  KS++ V + + G
Sbjct: 135 SPLARGEQVRVIKGPLSGLVGELVSVDG-KSKIAVRLNMLG 174


>gi|255282325|ref|ZP_05346880.1| putative transcription antiterminator [Bryantella formatexigens DSM
           14469]
 gi|255267273|gb|EET60478.1| putative transcription antiterminator [Bryantella formatexigens DSM
           14469]
          Length = 183

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV +  E++       ++S + L+    +  IP   V    +G     ++  FPGY
Sbjct: 17  WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGVWKTQKQILFPGY 72

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +       ++  +K    +   +GTG    P++++E E ++       Q    S    
Sbjct: 73  VFVVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGF-GGKEQVVQMSEGII 131

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G RV +  GP     G ++ +D  K +  +E+ + G +  V++    V K
Sbjct: 132 TGSRVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182


>gi|253567771|ref|ZP_04845182.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298388201|ref|ZP_06997734.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|251841844|gb|EES69924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259039|gb|EFI01930.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 192

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+  V  + EKK  E +G             E  +P ++ +     R+   E    P
Sbjct: 25  KRWYVAHVRIHHEKKVAEYLGKM---------GIETFVPVQQEIHQWSDRRKLVETVLLP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
             V + A   +++      T      L     P+ + D ++      ++ + +    +  
Sbjct: 76  MMVFVHADPKERMAALTLATVSRYMVLRGEGKPAVIPDDQMARFRFMLDYSEEAICMNYS 135

Query: 123 F-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               G++V V  GP     G +  +D  KS++ V + + G    V++    VE+I
Sbjct: 136 PLARGKKVRVIKGPLTGLVGELVALDG-KSKIAVRLDMLGCAC-VDMPIGYVEQI 188


>gi|59711410|ref|YP_204186.1| transcriptional activator RfaH [Vibrio fischeri ES114]
 gi|59479511|gb|AAW85298.1| DNA-binding transcriptional antiterminator [Vibrio fischeri ES114]
          Length = 164

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++                  ++  L++ + E   P   V  + +G++   +   FP
Sbjct: 2   KQWYLLYCKRG---------EQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFP 52

Query: 63  GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ I         + +I+ T  V  F+  G  P  +    I   +  ++    +     
Sbjct: 53  CYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIY-SLKALDENNNKEKLEC 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             E G++V + +GP++    I K  D EK R  + + +  +   +++  + +E
Sbjct: 112 LPEAGQKVAIKEGPYSGIEAIYKEADGEK-RSILLITLINKKVEIKIPNSDIE 163


>gi|78188132|ref|YP_378470.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3]
 gi|78170331|gb|ABB27427.1| transcription antitermination protein nusG [Chlorobium
           chlorochromatii CaD3]
          Length = 197

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY V V S  EKK  +++  R              +P    +     RK       F G
Sbjct: 9   NWYAVYVRSRYEKKVYQALLEREVN---------SFLPLYETIRQWSDRKKKVSEPLFRG 59

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +   M  +    + DT  V+ F+G G  PS + + EIE +   V        +    
Sbjct: 60  YVFVNIAM-QQESIKVLDTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRTVASL 118

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVI 159
             G++V V  GPF    G+V     E   V         VEV I
Sbjct: 119 PAGQKVRVIAGPFKDMEGVVVKEGRESQIVIYFDSIMQGVEVSI 162


>gi|167037961|ref|YP_001665539.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167040859|ref|YP_001663844.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
 gi|320116378|ref|YP_004186537.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855099|gb|ABY93508.1| NusG antitermination factor [Thermoanaerobacter sp. X514]
 gi|166856795|gb|ABY95203.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929469|gb|ADV80154.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 179

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++   S  E K  + I              ++ IP  +++   KG+ V   +  FP
Sbjct: 2   KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + A M+D +Y+ I +  K   FL  G+ P+ V + E++ I++  + +    +S   
Sbjct: 56  GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 115

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            E GERV + +GP   + G++K +D+ K R  V   I G +  V+LA   +E
Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166


>gi|167957244|ref|ZP_02544318.1| transcription antitermination factor [candidate division TM7
           single-cell isolate TM7c]
          Length = 75

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           V+ P   + FE GE V V DGPF  F+G +  +D  K ++ V V +FGR TPVEL   QV
Sbjct: 13  VEEPKHQIDFEEGEVVSVIDGPFKGFDGTISEIDTVKGKIKVMVSMFGRDTPVELDALQV 72

Query: 174 EKI 176
           +KI
Sbjct: 73  KKI 75


>gi|256751800|ref|ZP_05492673.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749328|gb|EEU62359.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
          Length = 179

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++   S  E K  + I              ++ IP  +++   KG+ V   +  FP
Sbjct: 2   KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + A M+D +Y+ I +  K   FL  G+ P+ V + E++ I++  + +    +S   
Sbjct: 56  GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 115

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            E GERV + +GP   + G++K +D+ K R  V   I G +  V+LA   +E
Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166


>gi|89073226|ref|ZP_01159756.1| transcriptional activator RfaH [Photobacterium sp. SKA34]
 gi|89050936|gb|EAR56400.1| transcriptional activator RfaH [Photobacterium sp. SKA34]
          Length = 165

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY++    S  E+  +           L+        P   V  V +G+++ S    F
Sbjct: 2   KDWYLLYCKRSEQERAVI----------NLERQGVGCYYPQVTVKKVSRGKRIESIEPLF 51

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YV ++       Y +++ T  V  F+  G  P  V +  I ++M   ++   + + S+
Sbjct: 52  PSYVFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEKHQRLLSI 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + G+ + +  G F     I +  D EK R  + + + G+   V +    + K
Sbjct: 112 LPQPGDTLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSIENTDLLK 164


>gi|220928294|ref|YP_002505203.1| NusG antitermination factor [Clostridium cellulolyticum H10]
 gi|219998622|gb|ACL75223.1| NusG antitermination factor [Clostridium cellulolyticum H10]
          Length = 173

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 11/179 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V +  E+   + +  R     LD  +    +P    +  + G    +    FP
Sbjct: 1   MYWYVLFVRTGREENVKKLLSKR-----LDKDLFLPFVPLNERIFKKAGTVNKNMEILFP 55

Query: 63  GYVLIKA-----VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           GYV I++              +K    +I  +   +    V +SE   I+  +       
Sbjct: 56  GYVFIESKVASQEFVKMTNELMKSLQDIIRLVRYSDIEIAVRESERI-ILQSLYNNNNCI 114

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            SS     G+++ + DGP      IV++++  K    +E+   G +  V ++   V+K+
Sbjct: 115 ESSSGIIKGDKIYIIDGPLRGRESIVRHINRHKREAKIEIEFMGNIRLVSVSLEIVQKL 173


>gi|300914898|ref|ZP_07132214.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
 gi|307723869|ref|YP_003903620.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
 gi|300889833|gb|EFK84979.1| NusG antitermination factor [Thermoanaerobacter sp. X561]
 gi|307580930|gb|ADN54329.1| NusG antitermination factor [Thermoanaerobacter sp. X513]
          Length = 184

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++   S  E K  + I              ++ IP  +++   KG+ V   +  FP
Sbjct: 7   KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV + A M+D +Y+ I +  K   FL  G+ P+ V + E++ I++  + +    +S   
Sbjct: 61  GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 120

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            E GERV + +GP   + G++K +D+ K R  V   I G +  V+LA   +E
Sbjct: 121 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 171


>gi|240047307|ref|YP_002960695.1| transcription antitermination protein NusG [Mycoplasma conjunctivae
           HRC/581]
 gi|239984879|emb|CAT04872.1| Transcription antitermination protein [Mycoplasma conjunctivae]
          Length = 184

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 73/181 (40%), Gaps = 14/181 (7%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLD-----HLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +   SN E  A+  +  R+   G +       + +  +P        + +K    +  + 
Sbjct: 2   ISTISNKEDTAITLLKNRIEHEGPEMKAHFKEIIKFDVPYYAEKENTQEKK-IKYQNLYK 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-------EIEHIMNQVEAAVQ 115
           GY  IK  M D+ ++ +++T  + G +G+    +  T           ++    +    Q
Sbjct: 61  GYFFIKMDMNDQAWYIVRNTQYITGLVGSHGRGAKPTPISDRHFKKMKDNWEQIINDFKQ 120

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV-IFGRVTPVELAYNQVE 174
               ++  ++ + V + DGPF    G V  + +++  + VE+  +FG+       Y  VE
Sbjct: 121 YKGITLKIKIDDLVKIIDGPFNGDIGRVVAISDDRKVIDVELDNVFGKKAITSFDYKVVE 180

Query: 175 K 175
           K
Sbjct: 181 K 181


>gi|27363666|ref|NP_759194.1| transcriptional activator RfaH [Vibrio vulnificus CMCP6]
 gi|27359782|gb|AAO08721.1| transcriptional activator RfaH [Vibrio vulnificus CMCP6]
          Length = 168

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++                  ++  L++   E   P+  V  + +G++       FP
Sbjct: 2   KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQTKSEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
            Y+ ++        + T++ T  V+ F+  G +P  +    I  +    +   +     S
Sbjct: 53  SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHESALQGS 112

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + G+ + V  G FA    I +  D E  R  + V +  +  PV +  + +E
Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165


>gi|133872302|gb|ABO40221.1| transcription antitermination component [Candidatus Liberibacter
           africanus]
          Length = 49

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/49 (85%), Positives = 46/49 (93%)

Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           VCVSDGPFASFNGIVK+VDEE+SR+ VEV IFGR TPVELAYNQVEK+V
Sbjct: 1   VCVSDGPFASFNGIVKDVDEERSRLKVEVSIFGRATPVELAYNQVEKVV 49


>gi|330446599|ref|ZP_08310251.1| transcriptional activator RfaH [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490790|dbj|GAA04748.1| transcriptional activator RfaH [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 165

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY++    S  E+  +           LD    +   P   V  + +G++  S    F
Sbjct: 2   KDWYLLYCKRSEQERAVI----------NLDRQGVDCYYPQVTVQKITRGKRAESIEPLF 51

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YV +        Y +++ T  V  F+  G  P  V +  I ++M   ++A  + + S+
Sbjct: 52  PNYVFVHFDPEVVSYTSVRSTRGVADFIRCGTFPQKVREELIYNLMMNEDSAEHQRLLSM 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             + GE++ +  G F     I +  D EK R  + + + G+   V +    + K
Sbjct: 112 LPQPGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSVENTDLLK 164


>gi|309777610|ref|ZP_07672562.1| putative transcription antiterminator [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914699|gb|EFP60487.1| putative transcription antiterminator [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 176

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 14/181 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++ V    EKK +E +  +           +   P + VV   +G++V  ++  
Sbjct: 1   MMKPWYVLYVMGGREKKILELLNQK--------EDVKAFTPLKEVVHRIQGKRVIVKKPL 52

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-----EIEHIMNQVEAAVQ 115
           FP YV ++  +    +             G  +      D      E    +  +     
Sbjct: 53  FPSYVFVETELNPTGFQQAL-IQYRSQISGILKELKYENDISALSAEERAYLEGLMDREH 111

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               S    +   V +++GP   +   +  +D  K R  + V +  R   V+++   V+K
Sbjct: 112 NVRLSKGEILDGEVIITEGPLKGYESNIIRIDRHKRRAILNVQMNERKLQVDVSLEIVKK 171

Query: 176 I 176
           I
Sbjct: 172 I 172


>gi|315647771|ref|ZP_07900872.1| putative transcription antitermination protein [Paenibacillus
           vortex V453]
 gi|315276417|gb|EFU39760.1| putative transcription antitermination protein [Paenibacillus
           vortex V453]
          Length = 192

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 30/197 (15%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY + V +  E      +  R   + L  ++ +  +P       +     +  +  FP
Sbjct: 1   MSWYALFVKTGYESSIKRWLDTRFDNNLLHSVIPKRKVP-----EKKDRTVQHVIKTLFP 55

Query: 63  GYVLIKAVMTDKVYHTIKD---TPKVIGFLGTGENPSPVTDS------------------ 101
           GYV I+  M+  +Y+T+K+       + +L   +  S + D                   
Sbjct: 56  GYVFIETKMSFSIYYTLKENPFIYNTLNYLNNKDKRSTLPDVQMASVASERPAAESHFFK 115

Query: 102 ----EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               E   ++ Q+    +    S  +    +V V  GP       +K VD+ K R  V +
Sbjct: 116 EIPSEEMLVVLQLINENEVIEYSQVYFQDSKVIVQSGPLKGLESHIKKVDKHKKRAKVLM 175

Query: 158 VIFGRVTPVELAYNQVE 174
            I G+   V++    +E
Sbjct: 176 NIMGKEQLVDVGIEIIE 192


>gi|295106882|emb|CBL04425.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
          Length = 162

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 4/164 (2%)

Query: 12  SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
           +  E      I    S    D ++ E  +P   V    +G         FPGY+++ +  
Sbjct: 2   AGREFAVQRQIEQFAS----DDVLDECFVPQYEVQKHLRGEWRTCTAVLFPGYLIVVSDR 57

Query: 72  TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
             ++   +K  P+    L       P+   E+  I    E   +    S     G+++ V
Sbjct: 58  IAELQAQLKQIPQFASVLNNDGTFIPLEPHEVAWIDAFTEKEHRVIGMSEGVIEGDQIVV 117

Query: 132 SDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             GP  +  G ++ ++  K   ++E+ +FGR    ++    V K
Sbjct: 118 LKGPLVNRTGWIRKINRRKRTAYLEIEMFGRTIQTKIGLGIVRK 161


>gi|29345786|ref|NP_809289.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337679|gb|AAO75483.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 192

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+  V  + EKK  E +G             E  +P ++ +     R+   E    P
Sbjct: 25  KRWYVAHVRIHHEKKVAEYLGKM---------GIETFVPVQQEIHQWSDRRKLVETVLLP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
             V + A   +++      T      L     P+ + D ++      ++ + +    +  
Sbjct: 76  MMVFVHADPKERMAALTLATVSRYMVLRGEGKPAVIPDDQMASFRFMLDYSEEAICMNYS 135

Query: 123 F-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               G++V V  GP     G +  +D  KS++ V + + G    V++    VE+I
Sbjct: 136 PLARGKKVRVIKGPLTGLVGELVALDG-KSKIAVRLDMLGCAC-VDMPIGYVEQI 188


>gi|251791465|ref|YP_003006186.1| transcriptional activator RfaH [Dickeya zeae Ech1591]
 gi|247540086|gb|ACT08707.1| transcriptional acivator RfaH [Dickeya zeae Ech1591]
          Length = 162

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 13/171 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++        +A E +                  P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G  P+ V    I+ + N        P +    +
Sbjct: 55  LFVEFDPEHIHTTTISATRGVSHFVRFGSLPALVPQQVIDDLQNHQCTPHIAPET---PQ 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ V +++G F+    I    D E +R  + + +  +     +   Q  K
Sbjct: 112 PGDHVTITEGVFSGLQAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRK 161


>gi|210631838|ref|ZP_03297080.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279]
 gi|210159958|gb|EEA90929.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279]
          Length = 192

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 4/175 (2%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY++QV    E      IG  + +S L     E+  P        +GR V  ++  
Sbjct: 1   MRVQWYVIQVMKGREDSMASLIGRVVPKSLLQ----EVFSPKYETEIKVRGRWVPVQKTL 56

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGY++      + +   ++D P+    L  G    P+  +E+E I +      +    S
Sbjct: 57  LPGYLIAVTNDPEGLEAVLRDLPEFARLLAQGNEFVPLAPAEVEVIGSFTSPGKRVVPMS 116

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  + G+RV V+ GP      +VK +   KS   +EV + GRV    +    + K
Sbjct: 117 IGVKDGDRVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171


>gi|167623413|ref|YP_001673707.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4]
 gi|167353435|gb|ABZ76048.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4]
          Length = 178

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 15/179 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++   S  E +A +++              +  +P+     + KG+        FP
Sbjct: 2   KAWYLIYCKSRGEARAQQNLAL---------QQIDTYLPTYPEEKLVKGQVSVRRVSLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-----AVQRP 117
            Y+ I           I +T  VI  +G  E  + + DS I  I  +        + Q  
Sbjct: 53  SYLFINFDPEVTSVSKIHNTRGVIRIVGCKELMTSIDDSVIHAIKMREHKLLSEISSQSA 112

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +   E G++VC + GPF    GI    + EK R  V   + G+   V +  + ++ +
Sbjct: 113 EPAPKMEQGDKVCFTKGPFVELEGIFDEANGEK-RCFVLFELMGKQQRVVVDRDVIKHV 170


>gi|298481184|ref|ZP_06999378.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298272758|gb|EFI14325.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 188

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G +  +D  +S++ V + + G
Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTIDG-RSKIAVRLNMLG 173


>gi|218901298|ref|YP_002449132.1| transcription antitermination protein NusG [Bacillus cereus
          AH820]
 gi|218535625|gb|ACK88023.1| transcription antitermination protein NusG [Bacillus cereus
          AH820]
          Length = 96

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
          M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++   +R+ 
Sbjct: 1  MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLXKRKV 60

Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
          FPGYVL++ +MTD  ++ +++TP V GF
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGF 88


>gi|320157066|ref|YP_004189445.1| transcriptional activator RfaH [Vibrio vulnificus MO6-24/O]
 gi|319932378|gb|ADV87242.1| transcriptional activator RfaH [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++                  ++  L++   E   P+  V  + +G++       FP
Sbjct: 2   KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQTKSEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
            Y+ ++        + T++ T  V+ F+  G  P  +    I  +    +   Q     S
Sbjct: 53  SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAQPKELQGDLIYELKLLEQEGHQSALQGS 112

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + G+ + V  G FA    I +  D E  R  + V +  +  PV +  + +E
Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165


>gi|160887485|ref|ZP_02068488.1| hypothetical protein BACOVA_05504 [Bacteroides ovatus ATCC 8483]
 gi|156107896|gb|EDO09641.1| hypothetical protein BACOVA_05504 [Bacteroides ovatus ATCC 8483]
          Length = 193

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLGKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G + NVD  KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLSGLVGELVNVDG-KSKIAVRLNMLG 174


>gi|329898901|ref|ZP_08272499.1| Transcriptional activator RfaH [gamma proteobacterium IMCC3088]
 gi|328920709|gb|EGG28181.1| Transcriptional activator RfaH [gamma proteobacterium IMCC3088]
          Length = 168

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 11/168 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W +VQ     E           +   L      + +P  +     +G+        FP
Sbjct: 1   MTWLVVQTKPKQED---------AAELNLSRQGYRVFLPKLQQRKRVRGKWQLVVSPLFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I           ++ T  +   +  G++  PV D  +E +  Q +  +     S +
Sbjct: 52  RYLFIDVDYGTDDLAPVRSTVGIFNLVRFGQDIIPVPDEVVEFLQVQQDPTLGAKNESDW 111

Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
             + G++V +  GPFA   G+   + +++ R ++ + + GR + + + 
Sbjct: 112 PHKKGDKVEILQGPFAGLAGVFD-MSKDEERAYLFIELLGRASRIVVE 158


>gi|238755200|ref|ZP_04616545.1| Transcriptional activator rfaH [Yersinia ruckeri ATCC 29473]
 gi|238706541|gb|EEP98913.1| Transcriptional activator rfaH [Yersinia ruckeri ATCC 29473]
          Length = 162

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P+  +  + +G++  S+   
Sbjct: 1   ME-SWYLLYCKRGQLLRAKEHLER---------QQVVSFTPTAMMERIVRGKRQTSDVHL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +K         TI  T  V  F+  G  P+ V+++ I  +++  +  +  P   
Sbjct: 51  FPNYLFVKFDPECIHTTTISATRGVSHFVRFGAGPTIVSENIINELISCSQKVIIDPAVP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V    G+ V + +G FA    I    D E +R  + + I  +     L+ +Q +KI
Sbjct: 111 V---PGDIVRIKEGVFAGLEAIYNEPDGE-ARSMLLLNILNKPINQSLSNSQFDKI 162


>gi|220926326|ref|YP_002501628.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219950933|gb|ACL61325.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 218

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 13/175 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W + +       +A   +    + +GL           E       GR+           
Sbjct: 52  WLVARTRPRWSARAARDL----AEAGLATFEARE----EVERVEPNGRRRIVREPLLRRL 103

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI----MNQVEAAVQRPVSS 120
           + +     D     ++  P V   L        +  + ++                 V++
Sbjct: 104 IFVGVR-DDAELRRVEAHPGVEQVLFREGRAVVIPPAMLQAFADALTGHTGEGEAEAVAA 162

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + F +G+ V V++GP A   GIV+ VD  + R  V V +FGR TPV+L  +Q+E+
Sbjct: 163 LLFALGDAVRVTEGPLARLPGIVEAVDPHRRRYRVAVEMFGRATPVDLDEDQIER 217


>gi|295084056|emb|CBK65579.1| Transcription antiterminator [Bacteroides xylanisolvens XB1A]
          Length = 188

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G +  VD  +S++ V + + G
Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173


>gi|189218043|ref|YP_001938685.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum
           infernorum V4]
 gi|189184901|gb|ACD82086.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum
           infernorum V4]
          Length = 185

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 17/179 (9%)

Query: 1   MTPRW------YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
           M  RW      Y + +    EK AVE++              E+  P  +   +R  +  
Sbjct: 1   MEKRWSEQSFWYCLSIQPKKEKLAVENLKKE---------NIEVFFPQFQYQKIRSRKTS 51

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114
                 FPGY+  K  +  K+    + T  V   +  G +   + DS IE +  Q     
Sbjct: 52  LVLEPLFPGYLFAKFNLYSKLTFV-RSTKGVRKVVHFGSSYPVIPDSFIEELRIQFGEEG 110

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            +       +VG  + +++GPF  ++ IV      K RV V +   GR   +E+   ++
Sbjct: 111 IK-TIRERIDVGSTINIAEGPFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168


>gi|37679190|ref|NP_933799.1| transcriptional activator RfaH [Vibrio vulnificus YJ016]
 gi|37197933|dbj|BAC93770.1| transcription antiterminator [Vibrio vulnificus YJ016]
          Length = 168

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++                  ++  L++   E   P+  V  + +G++       FP
Sbjct: 2   KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQIKSEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
            Y+ ++        + T++ T  V+ F+  G +P  +    I  +    +   Q     S
Sbjct: 53  SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHQSALQGS 112

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + G+ + V  G FA    I +  D E  R  + V +  +  PV +  + +E
Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165


>gi|160884473|ref|ZP_02065476.1| hypothetical protein BACOVA_02457 [Bacteroides ovatus ATCC 8483]
 gi|293369767|ref|ZP_06616343.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|299145978|ref|ZP_07039046.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|156110212|gb|EDO11957.1| hypothetical protein BACOVA_02457 [Bacteroides ovatus ATCC 8483]
 gi|292635189|gb|EFF53705.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|298516469|gb|EFI40350.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 191

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G +  VD  +S++ V + + G
Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173


>gi|90410777|ref|ZP_01218792.1| transcriptional activator RfaH [Photobacterium profundum 3TCK]
 gi|90328408|gb|EAS44706.1| transcriptional activator RfaH [Photobacterium profundum 3TCK]
          Length = 165

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             W+++    S  E+  +           LD    E   P   V  + +G++V +    F
Sbjct: 2   KDWFLLYCKRSEQERAVI----------NLDRQGVECYYPQVSVNKIVRGKRVETSEPLF 51

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+ +        Y T++ T  V  F+  G  P  V    +  +M        +   S 
Sbjct: 52  PSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNENCEDHQAKLSS 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               GE + +  G F     I +  D EK R  + + + G+   V +    + K
Sbjct: 112 LPIPGECLQLKQGQFKGIEAIYQEADGEK-RSFMLINLLGKPVKVSVENEDIVK 164


>gi|293393998|ref|ZP_06638304.1| transcriptional activator RfaH [Serratia odorifera DSM 4582]
 gi|291423558|gb|EFE96781.1| transcriptional activator RfaH [Serratia odorifera DSM 4582]
          Length = 162

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G++       
Sbjct: 1   ME-SWYLLYCKRGQLLRAQEHLERQAVN---------CLSPIITLEKIVRGKRTAVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    IE +      +   P + 
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSHFVRFGSLPTMIPLKVIEELRAHTSDSYVDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V ++DG F   + I    D E +R  + + +  +     L   Q EK+
Sbjct: 110 --PQPGDTVLITDGVFEGLHAIYTEPDGE-ARSMLLLNLINKQVTQSLDNRQFEKM 162


>gi|37528234|ref|NP_931579.1| transcriptional activator RfaH [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787671|emb|CAE16778.1| Transcriptional activator RfaH [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 162

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A+E++                  P+ R+  + +G++  +    
Sbjct: 1   ME-NWYLIYCKRGQISRAIENLER---------QDVACLTPTARIEKITRGKRTVNIEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G +P+ V ++ I+ I++  E     P + 
Sbjct: 51  FPHYLFVQFDPEIIHTTTIHSTRGVSHFVRFGVHPAIVPETLIKEIVSATEQEYVSPDTP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V    G+ V ++ G F     I    D E  R  + + I  +  P  L   Q  KI
Sbjct: 111 VA---GDTVLITAGIFEGLQAIYNEPDGET-RSILLLNILNKQLPKALDNKQFVKI 162


>gi|218901299|ref|YP_002449133.1| transcription antitermination protein NusG [Bacillus cereus AH820]
 gi|229077392|ref|ZP_04210051.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock4-2]
 gi|254724238|ref|ZP_05186023.1| transcription antitermination protein NusG [Bacillus anthracis str.
           A1055]
 gi|218536551|gb|ACK88949.1| transcription antitermination protein NusG [Bacillus cereus AH820]
 gi|228705917|gb|EEL58244.1| Transcription antitermination protein nusG [Bacillus cereus
           Rock4-2]
          Length = 68

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
              +   V    FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL +
Sbjct: 3   HMGMDNEVVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDF 62

Query: 171 NQVEKI 176
           +Q+EK+
Sbjct: 63  HQIEKL 68


>gi|317052839|ref|YP_004119605.1| NusG antitermination factor [Pantoea sp. At-9b]
 gi|316953579|gb|ADU73049.1| NusG antitermination factor [Pantoea sp. At-9b]
          Length = 170

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 15/170 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
           M   WY+ Q     EK+A + +                 +P    V ++  G +  +E+ 
Sbjct: 1   ME-NWYVAQTKYAQEKRAQQQL---------QSQGVTCLLPVFSEVRLQNGGIRRIAEQP 50

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FP Y+ ++          IK T  V   +  G  PS V DS I  +          P++
Sbjct: 51  LFPNYIFVRFDPEVVHTTAIKATRGVSTLISFGGLPSVVPDSVITRLNQ---GWESAPLT 107

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +     G+RV + DG F     +    D  K R  + + +  R  PV + 
Sbjct: 108 TDAPAHGDRVVIRDGVFEGLEAVWYEPDGMK-RAMLLLTLMNRQVPVPVN 156


>gi|255692527|ref|ZP_05416202.1| putative transcriptional regulator [Bacteroides finegoldii DSM
           17565]
 gi|260621806|gb|EEX44677.1| putative transcriptional regulator [Bacteroides finegoldii DSM
           17565]
          Length = 190

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVAMVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKKVEAVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G + NVD  K+++ V + + G
Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-KTKIAVRLNLLG 174


>gi|90579282|ref|ZP_01235092.1| transcriptional activator RfaH [Vibrio angustum S14]
 gi|90440115|gb|EAS65296.1| transcriptional activator RfaH [Vibrio angustum S14]
          Length = 165

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY++    S  E+  +           LD    +   P   V  V +G+++ S    F
Sbjct: 2   KDWYLLYCKRSEQERAVI----------NLDRQGVDCYYPQVTVKKVSRGKRIESIEPLF 51

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P YV ++       Y +++ T  V  F+  G  P  V +  I ++M   ++   + + S+
Sbjct: 52  PSYVFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEEHQRLLSM 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               GE++ +  G F     I +  D EK R  + + + G+   V +    + K
Sbjct: 112 LPLPGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSIENTDLLK 164


>gi|160885742|ref|ZP_02066745.1| hypothetical protein BACOVA_03746 [Bacteroides ovatus ATCC 8483]
 gi|293370261|ref|ZP_06616821.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|299146226|ref|ZP_07039294.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|156108555|gb|EDO10300.1| hypothetical protein BACOVA_03746 [Bacteroides ovatus ATCC 8483]
 gi|292634758|gb|EFF53287.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|298516717|gb|EFI40598.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 193

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                GE+V V  GP     G +  VD  +S++ V + + G     ++    VEKI
Sbjct: 134 APLARGEKVRVVKGPLTGLVGELVTVDG-RSKIAVRLNMLGCAC-ADMPVGYVEKI 187


>gi|121606088|ref|YP_983417.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
 gi|120595057|gb|ABM38496.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
          Length = 184

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W++       E          ++   L     ++ +P  + +              F  Y
Sbjct: 23  WFLAHTRPRLE---------TVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVFEPMFSRY 73

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF- 123
           V  +     +    ++ T  V   +  G   + +    ++ I    +      V+ +   
Sbjct: 74  VFFRTTSLAQSIAPVRSTRGVAQIVSFGSEFATIRPDMLDAIRQLEQLRNAADVAELSTL 133

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             G  V   +   +   G+VK+V     RV V + I GR   V + ++Q+
Sbjct: 134 RPGHLVRFCNSALSGLEGVVKSVSS--CRVAVLLEIMGRQQLVRVDHHQL 181


>gi|300724670|ref|YP_003713995.1| lipopolysaccharide core, F pilin, and hemolysin export
           transcriptional activator [Xenorhabdus nematophila ATCC
           19061]
 gi|297631212|emb|CBJ91907.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           haemolysin [Xenorhabdus nematophila ATCC 19061]
          Length = 162

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY++            +I        L+        P+ ++  V +G++       FP 
Sbjct: 3   NWYLLYCKRGQ---VSRAIE------NLERQDVTCLTPTAKIEKVIRGKRTTITEPLFPN 53

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +          T+  T  V  F+     P+ V  + I+ +M+  E     P +    
Sbjct: 54  YLFVHFDPEVIHTTTVNSTRGVNNFIRFSTYPAIVPQALIDELMSVTEQEYVSPET---P 110

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ V +++G F     I    D E  R  + + I  +     L   Q  K+
Sbjct: 111 MTGDTVLITEGIFEGIQAIYNEPDGET-RSILLLNILNKEVSKTLDNKQFIKV 162


>gi|54309803|ref|YP_130823.1| transcriptional activator RfaH [Photobacterium profundum SS9]
 gi|46914241|emb|CAG21021.1| putative transcriptional activator RfaH [Photobacterium profundum
           SS9]
          Length = 165

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             W+++    S  E+  +           LD    E   P   V  + +G++V      F
Sbjct: 2   KDWFLLYCKRSEQERAVI----------NLDRQGVECYYPQVNVNKIVRGKRVEISEPLF 51

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+ +        Y T++ T  V  F+  G  P  V    +  +M      V +   S 
Sbjct: 52  PSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNENCEVHQAKLSS 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               GE + +  G F     I +  D EK R  + + + G+   V +    + K
Sbjct: 112 LPIPGECLQLKQGQFKGIEAIYQEADGEK-RSFMLINLLGKPVKVSVENEDIVK 164


>gi|238784377|ref|ZP_04628387.1| Transcriptional activator rfaH [Yersinia bercovieri ATCC 43970]
 gi|238714669|gb|EEQ06671.1| Transcriptional activator rfaH [Yersinia bercovieri ATCC 43970]
          Length = 162

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G++       FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQAVN---------CWTPLVIIEKIVRGKRTEVTEPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +     D    TI  T  V  F+  G  P+ + D  I  + +     +  P   + 
Sbjct: 53  NYLFVAFDAEDIHTTTISATRGVSHFVRFGAQPAVIPDIVITEMQSHTTDKIIAPEVPL- 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G FA    I    D E +R  + + +        L   Q EK
Sbjct: 112 --PGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVIQSLENRQFEK 161


>gi|325473561|gb|EGC76754.1| NusG family Transcription antitermination protein [Treponema
           denticola F0402]
          Length = 175

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 4/171 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y+VQV +  E      I     ++  D L   I  P   +   + G+    +   F GY+
Sbjct: 4   YVVQVSTGKE---KNFIEDAEFKNKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFGGYL 60

Query: 66  LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
            I    ++  +Y  ++       FL   + P  +   + E +   +       +S V F+
Sbjct: 61  FIGTDEISKDLYQHLRKCKGFYRFLPNNQEPKFLEGRDFEILNQFISFGGLAKISQVVFD 120

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             +R+ V +GP +   G +  V++ K R  V + +      ++L +  + K
Sbjct: 121 ENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171


>gi|197336161|ref|YP_002155565.1| transcriptional activator RfaH [Vibrio fischeri MJ11]
 gi|197317651|gb|ACH67098.1| transcriptional activator RfaH [Vibrio fischeri MJ11]
          Length = 164

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++                  ++  L++ + E   P   V  + +G++  ++   FP
Sbjct: 2   KEWYLLYCKRG---------EQERAKLHLENQMVECFYPEIVVEKIVRGKRKQAKEPLFP 52

Query: 63  GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ I         + +I+ T  V  F+  G  P  +    I   +  ++    +     
Sbjct: 53  CYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIY-SLKALDENNNKEKLEC 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             E G++V +  GP++    I K  D EK R  + + +  +   +++  + +E
Sbjct: 112 LPEAGQKVAIKKGPYSGIEAIYKEADGEK-RSILLITLINKKVEIKIPNSDIE 163


>gi|220927662|ref|YP_002504571.1| NusG antitermination factor [Clostridium cellulolyticum H10]
 gi|219997990|gb|ACL74591.1| NusG antitermination factor [Clostridium cellulolyticum H10]
          Length = 188

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY++ V S  E +  + +   +    ++       IP    +    G      +  FPG
Sbjct: 16  HWYVLFVKSGREHRVEQYLKKIVGIDMIN-----PFIPLHEFLFKISGTVKRELKPLFPG 70

Query: 64  YVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           YV I++ M  +      Y+ I     ++  L   +    V DSE + +++          
Sbjct: 71  YVFIESDMAGQEFIRKLYNKIYLLSDIVRILKYSDTEIAVRDSEKQMLLDLCNNEHCIES 130

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           S      G+R+ +++GP      I+K V+  K +  VE+   G    V +A   VEK+V
Sbjct: 131 SR-GVIKGDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVEKVV 188


>gi|42526227|ref|NP_971325.1| NusG family transcription antitermination protein [Treponema
           denticola ATCC 35405]
 gi|41816339|gb|AAS11206.1| transcription antitermination protein, NusG family [Treponema
           denticola ATCC 35405]
          Length = 175

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 4/171 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y+VQV +  E      I     ++  D L   I  P   +   + G+    +   F GY+
Sbjct: 4   YVVQVSTGKE---KNFIEDAEFKNKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFAGYL 60

Query: 66  LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
            I    ++  +Y  ++       FL   + P  +   + E +   +       +S V F+
Sbjct: 61  FIGTDEISKDLYQHLRKCKGFYRFLPNNQEPKFLEGRDFEILNQFISFGGLAKISQVVFD 120

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             +R+ V +GP +   G +  V++ K R  V + +      ++L +  + K
Sbjct: 121 ENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171


>gi|317046423|ref|YP_004114071.1| NusG antitermination factor [Pantoea sp. At-9b]
 gi|316948040|gb|ADU67515.1| NusG antitermination factor [Pantoea sp. At-9b]
          Length = 162

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G++       
Sbjct: 1   ME-SWYLLYCKRGQLLRAKEHLERQAVN---------CLSPMIALEKIVRGKRTTVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P+ V    IE +       +  P + 
Sbjct: 51  FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTMPATVPYEVIEALQCDAPQILIDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              +VG+ V +++G F     I    D E  R  + + +  +     +   Q  K
Sbjct: 110 --PQVGDEVIITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRK 161


>gi|262276329|ref|ZP_06054138.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886]
 gi|262220137|gb|EEY71453.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886]
          Length = 165

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 11/175 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M P WY++    +           + +   L     +   P   V  +R+G++ +     
Sbjct: 1   MDP-WYLLYCKRS---------EQQRAEQHLKRQGVDCYYPQVMVEKIRRGKRSSELEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP YV          + T++ T  V+ F+  G  P+ V    I H+M   ++  QR   S
Sbjct: 51  FPNYVFASFDPEKISFTTVRSTRGVVDFVRQGLMPTVVPAELITHLMAHEDSDEQREALS 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             F+ G++V V  G F     I K  D E  R  + + +  R   V      + K
Sbjct: 111 DVFKPGDQVEVLSGLFEGTEAIYKEADGE-LRSILLINLISRQVEVSTENKVIRK 164


>gi|261211969|ref|ZP_05926255.1| transcriptional activator RfaH [Vibrio sp. RC341]
 gi|260838577|gb|EEX65228.1| transcriptional activator RfaH [Vibrio sp. RC341]
          Length = 165

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKIHLENQNVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++        + T++ T  V+ F+  G +P  +    I   + Q++    + ++  
Sbjct: 53  SYMFVRFDFEHGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQMKNLAKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ + V+ GPFA    I +  D +  R  + V +  +  P+ +    
Sbjct: 112 LPEKGQTIRVARGPFAGIEAIYQEPDGDT-RSIMLVKMISQQVPMSIENTD 161


>gi|242241150|ref|YP_002989331.1| transcriptional activator RfaH [Dickeya dadantii Ech703]
 gi|242133207|gb|ACS87509.1| transcriptional acivator RfaH [Dickeya dadantii Ech703]
          Length = 162

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++        +A E +                  P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLLRAKEHLER---------QFVTCLSPMITLEKIVRGKRTEVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         T+  T  V  F+  G  P+ V    IE + +     +  P +    +
Sbjct: 55  LFVEFDPERIHTTTVNSTRGVSHFVRFGAMPAIVPSQVIEDLQSHQTEKIIDPDT---PQ 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+RV +++G F+    I    + E +R  + + +  +     L   Q  K+
Sbjct: 112 PGDRVVITEGVFSGLQAIYAEPNGE-ARSMLLLNLLNKQVRQCLDNRQFRKM 162


>gi|298484134|ref|ZP_07002301.1| transcriptional regulator [Bacteroides sp. D22]
 gi|299149121|ref|ZP_07042182.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|298269724|gb|EFI11318.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298512788|gb|EFI36676.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 192

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G + NVD  KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174


>gi|308188887|ref|YP_003933018.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
 gi|308059397|gb|ADO11569.1| Transcription antitermination protein nusG [Pantoea vagans C9-1]
          Length = 162

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   ME-SWYLLYCKRGQLLRAKEHLER---------QEVHCLSPMIALEKIVRGKRTTVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P+ V  + IE +   V   +  P + 
Sbjct: 51  FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPSAVIEALETDVPQILIDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V +++G F     I    D E  R  + + +  +     +   Q  KI
Sbjct: 110 --PQSGDEVVITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRKI 162


>gi|229816235|ref|ZP_04446545.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM
           13280]
 gi|229808243|gb|EEP44035.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM
           13280]
          Length = 170

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 6/162 (3%)

Query: 15  EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74
           E +A   I            V +  +P   V   + G+      + FPGYV ++     +
Sbjct: 13  EDRAAALIAKIA-----QGAVDDCFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQ 67

Query: 75  VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVFFEVGERVCVSD 133
           +   +   P     L +  +      ++    +N +       +  S     G+ V V  
Sbjct: 68  IREALGRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEMSEGVIEGDCVMVIR 127

Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           GP       +  +D  K    V++ +FGR   + +    V K
Sbjct: 128 GPLKGHEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169


>gi|300021969|ref|YP_003754580.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523790|gb|ADJ22259.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 175

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +V   ++ E  A  ++              EI  P  R  +        S    FPGY
Sbjct: 15  WVVVNAQAHREFVAASNLKK---------QGYEIYAPVIRKTTRHARISRESLTPLFPGY 65

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +    D  +  I  T  +   +  G  PS +  + ++ +  + +  V    +    E
Sbjct: 66  LFARWTAPDMRWRPILSTVGIRSIVRNGNEPSRLDGAIVDALKAREKDGV-IVRAESQRE 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           +G+ V  + GPF      +  +  +K R+ V + +  R T V +  +Q+
Sbjct: 125 IGQIVRFARGPFDGIAAEIVELC-DKDRLVVLMTLLNRPTKVTVLEDQL 172


>gi|260174672|ref|ZP_05761084.1| putative transcriptional regulator [Bacteroides sp. D2]
 gi|315922935|ref|ZP_07919175.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696810|gb|EFS33645.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 188

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKIGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G +  VD  +S++ V + + G
Sbjct: 134 APLARGEKVRVVKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173


>gi|254724237|ref|ZP_05186022.1| transcription antitermination protein NusG [Bacillus anthracis
          str. A1055]
          Length = 96

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 50/88 (56%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
          M   WY+V  YS  E K   ++  R+   G+   +  + +P E  V ++ G++   +R+ 
Sbjct: 1  MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60

Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
          FPGYVL++ +MTD  ++ +++TP V G 
Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGV 88


>gi|256422616|ref|YP_003123269.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256037524|gb|ACU61068.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 174

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 13/173 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+    +N E+K  + I              E  +P  R       R    E   FP 
Sbjct: 14  KWYVAYTRANFERKVAKDIV---------DQQIEHYLPLRRETRKWSDRLKQIEVPLFPN 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +K  +  KV       P V+  +     P  V++ EI+HI  ++E   Q      ++
Sbjct: 65  YIFVKIKLQHKVNIL--GIPGVLSLVSFSGQPVSVSEREIQHIR-KIEERGQDIALEYYY 121

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            VG+RV ++ G F    GI+      + R  +++    +   VE+  +Q+E+I
Sbjct: 122 CVGDRVRITQGIFTGMEGILLR-KSGQMRFVLKLPAISQAVSVEIEGDQLERI 173


>gi|260170846|ref|ZP_05757258.1| putative transcriptional regulator [Bacteroides sp. D2]
 gi|315919178|ref|ZP_07915418.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693053|gb|EFS29888.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 192

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKIVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G + NVD  KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174


>gi|229523219|ref|ZP_04412626.1| transcriptional activator RfaH [Vibrio cholerae TM 11079-80]
 gi|229339582|gb|EEO04597.1| transcriptional activator RfaH [Vibrio cholerae TM 11079-80]
          Length = 165

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++        + T++ T  V+ F+  G +P  +    I   + Q++    +  +  
Sbjct: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKNATKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ V V+ G FA    I    D +  R  + V +  +  P+ +    
Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIENTD 161


>gi|299149025|ref|ZP_07042087.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|298513786|gb|EFI37673.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 198

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDGQMARFRFMLDYSEEAVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G +  V   KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174


>gi|160883751|ref|ZP_02064754.1| hypothetical protein BACOVA_01723 [Bacteroides ovatus ATCC 8483]
 gi|156110836|gb|EDO12581.1| hypothetical protein BACOVA_01723 [Bacteroides ovatus ATCC 8483]
          Length = 192

 Score = 78.9 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G + NVD  KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174


>gi|15828653|ref|NP_326013.1| transcription antitermination protein NusG [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089595|emb|CAC13355.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Mycoplasma pulmonis]
          Length = 196

 Score = 78.9 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 16/192 (8%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR------- 52
           M    WY++    N EK+ +E+I  ++    L+   ++  I  E  +S ++         
Sbjct: 1   MNKFNWYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDS 60

Query: 53  KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
              +++  + GY+ I+ V+T++ +  +++T  V G +G+    +  T          +E 
Sbjct: 61  YKTTKKNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEE 120

Query: 113 AVQRPVSSV------FFEVGERVCVSDGPFASFNGI--VKNVDEEKSRVHVEVVIFGRVT 164
             ++            F  G  V + DGPF +   +  +K  + EK    +E+   G+  
Sbjct: 121 ETKKEEEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSV 180

Query: 165 PVELAYNQVEKI 176
             ++ +  ++ I
Sbjct: 181 DTQIDHKHLKLI 192


>gi|294809330|ref|ZP_06768040.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294443422|gb|EFG12179.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 198

 Score = 78.9 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G +  V   KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174


>gi|307310231|ref|ZP_07589880.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
 gi|306899783|gb|EFN30408.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
          Length = 219

 Score = 78.9 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 12/176 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++V++  EK   +S+       G+  LV     P       R             GY
Sbjct: 52  WFALRVWTGREKIVEKSLDA----MGVRSLVPMRKGPDL---RRRGRVIEGQMMPVIHGY 104

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI--MNQVEAAVQRPVSSVF 122
           VL++ +   +    +     VI  LG  + P  ++D+E+     + +           + 
Sbjct: 105 VLVQMMALSEYLAGLLGLEHVIDVLGGCDRPMRLSDNEVSRFNGLARNGNFDWERPVHLV 164

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSR--VHVEVVIFGRVTPVELAYNQVEKI 176
              GE V ++ GPF      V    + K R  V V + + G   PV +    ++K+
Sbjct: 165 VRAGEPVWITAGPFCGRKATVVTPSK-KGRGDVVVSIDLMGGEVPVTVPLALLKKL 219


>gi|298387614|ref|ZP_06997166.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298259821|gb|EFI02693.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 192

 Score = 78.9 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 12/177 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E +       G+++      +P ++       R+        
Sbjct: 24  SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQEFHQWSDRRKLVTSVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120
           P  V +     +++      T      +    +P+ + D ++      ++ + +   ++S
Sbjct: 75  PMMVFVHVDPRERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
                GE+V V  GP     G + +VD  KS++ V + + G    V++    VE I+
Sbjct: 135 APLARGEKVRVIKGPLTGLVGELVHVDG-KSKIAVRLNMLGCAC-VDMPVGYVEPIM 189


>gi|258627093|ref|ZP_05721889.1| transcriptional activator RfaH [Vibrio mimicus VM603]
 gi|258580611|gb|EEW05564.1| transcriptional activator RfaH [Vibrio mimicus VM603]
          Length = 165

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKMHLENQDVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++    +   + T++ T  V+ F+  G +P  +    I   + Q++    +  +  
Sbjct: 53  SYMFVRFDFEEGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKGPAKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ V V+ G FA    I +  D +  R  + V +  +  P+ +    
Sbjct: 112 LPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPLSIENTD 161


>gi|237714660|ref|ZP_04545141.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406525|ref|ZP_06083074.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647458|ref|ZP_06725042.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CC 2a]
 gi|294806943|ref|ZP_06765766.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445429|gb|EEO51220.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355228|gb|EEZ04319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637200|gb|EFF55634.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CC 2a]
 gi|294445830|gb|EFG14474.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 188

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+VCV  GP     G +  VD  +S++ V + + G
Sbjct: 134 APLARGEKVCVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173


>gi|15641005|ref|NP_230636.1| transcriptional activator RfaH [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587350|ref|ZP_01677121.1| transcriptional activator RfaH, putative [Vibrio cholerae 2740-80]
 gi|121728134|ref|ZP_01681170.1| transcriptional activator RfaH, putative [Vibrio cholerae V52]
 gi|147675715|ref|YP_001216462.1| transcriptional activator RfaH [Vibrio cholerae O395]
 gi|153216032|ref|ZP_01950237.1| transcriptional activator RfaH, putative [Vibrio cholerae 1587]
 gi|153818608|ref|ZP_01971275.1| transcriptional activator RfaH, putative [Vibrio cholerae NCTC
           8457]
 gi|153822702|ref|ZP_01975369.1| transcriptional activator RfaH, putative [Vibrio cholerae B33]
 gi|153826186|ref|ZP_01978853.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-2]
 gi|153829897|ref|ZP_01982564.1| putative transcriptional activator RfaH [Vibrio cholerae 623-39]
 gi|183179424|ref|ZP_02957635.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-3]
 gi|227081164|ref|YP_002809715.1| putative transcriptional activator RfaH [Vibrio cholerae M66-2]
 gi|229505411|ref|ZP_04394921.1| transcriptional activator RfaH [Vibrio cholerae BX 330286]
 gi|229510919|ref|ZP_04400398.1| transcriptional activator RfaH [Vibrio cholerae B33]
 gi|229512448|ref|ZP_04401921.1| transcriptional activator RfaH [Vibrio cholerae TMA 21]
 gi|229518040|ref|ZP_04407484.1| transcriptional activator RfaH [Vibrio cholerae RC9]
 gi|229529916|ref|ZP_04419306.1| hypothetical protein VCG_003020 [Vibrio cholerae 12129(1)]
 gi|229608430|ref|YP_002879078.1| transcriptional activator RfaH [Vibrio cholerae MJ-1236]
 gi|254226222|ref|ZP_04919816.1| transcriptional activator RfaH, putative [Vibrio cholerae V51]
 gi|254848121|ref|ZP_05237471.1| transcriptional activator RfaH [Vibrio cholerae MO10]
 gi|255744772|ref|ZP_05418723.1| transcriptional activator RfaH [Vibrio cholera CIRS 101]
 gi|262151261|ref|ZP_06028397.1| transcriptional activator RfaH [Vibrio cholerae INDRE 91/1]
 gi|262167175|ref|ZP_06034888.1| transcriptional activator RfaH [Vibrio cholerae RC27]
 gi|297578597|ref|ZP_06940525.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298498895|ref|ZP_07008702.1| transcriptional activator RfaH [Vibrio cholerae MAK 757]
 gi|9655451|gb|AAF94151.1| transcriptional activator RfaH, putative [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548433|gb|EAX58493.1| transcriptional activator RfaH, putative [Vibrio cholerae 2740-80]
 gi|121629602|gb|EAX62024.1| transcriptional activator RfaH, putative [Vibrio cholerae V52]
 gi|124114482|gb|EAY33302.1| transcriptional activator RfaH, putative [Vibrio cholerae 1587]
 gi|125621258|gb|EAZ49598.1| transcriptional activator RfaH, putative [Vibrio cholerae V51]
 gi|126510834|gb|EAZ73428.1| transcriptional activator RfaH, putative [Vibrio cholerae NCTC
           8457]
 gi|126519783|gb|EAZ77006.1| transcriptional activator RfaH, putative [Vibrio cholerae B33]
 gi|146317598|gb|ABQ22137.1| putative transcriptional activator RfaH [Vibrio cholerae O395]
 gi|148874640|gb|EDL72775.1| putative transcriptional activator RfaH [Vibrio cholerae 623-39]
 gi|149740046|gb|EDM54215.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-2]
 gi|183012835|gb|EDT88135.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-3]
 gi|227009052|gb|ACP05264.1| putative transcriptional activator RfaH [Vibrio cholerae M66-2]
 gi|227012807|gb|ACP09017.1| putative transcriptional activator RfaH [Vibrio cholerae O395]
 gi|229333690|gb|EEN99176.1| hypothetical protein VCG_003020 [Vibrio cholerae 12129(1)]
 gi|229344755|gb|EEO09729.1| transcriptional activator RfaH [Vibrio cholerae RC9]
 gi|229350529|gb|EEO15476.1| transcriptional activator RfaH [Vibrio cholerae TMA 21]
 gi|229350884|gb|EEO15825.1| transcriptional activator RfaH [Vibrio cholerae B33]
 gi|229357634|gb|EEO22551.1| transcriptional activator RfaH [Vibrio cholerae BX 330286]
 gi|229371085|gb|ACQ61508.1| transcriptional activator RfaH [Vibrio cholerae MJ-1236]
 gi|254843826|gb|EET22240.1| transcriptional activator RfaH [Vibrio cholerae MO10]
 gi|255737803|gb|EET93197.1| transcriptional activator RfaH [Vibrio cholera CIRS 101]
 gi|262024396|gb|EEY43084.1| transcriptional activator RfaH [Vibrio cholerae RC27]
 gi|262030952|gb|EEY49580.1| transcriptional activator RfaH [Vibrio cholerae INDRE 91/1]
 gi|297536191|gb|EFH75024.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543228|gb|EFH79278.1| transcriptional activator RfaH [Vibrio cholerae MAK 757]
 gi|327483711|gb|AEA78118.1| Transcriptional activator RfaH [Vibrio cholerae LMA3894-4]
          Length = 165

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++        + T++ T  V+ F+  G +P  +    I   + Q++    +  +  
Sbjct: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKHATKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ V V+ G FA    I    D +  R  + V +  +  P+ +    
Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIENTD 161


>gi|160882250|ref|ZP_02063253.1| hypothetical protein BACOVA_00196 [Bacteroides ovatus ATCC 8483]
 gi|237715183|ref|ZP_04545664.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408864|ref|ZP_06085409.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294810721|ref|ZP_06769369.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
 gi|156112339|gb|EDO14084.1| hypothetical protein BACOVA_00196 [Bacteroides ovatus ATCC 8483]
 gi|229445016|gb|EEO50807.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353075|gb|EEZ02170.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294442054|gb|EFG10873.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 198

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G +  V   KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174


>gi|254291864|ref|ZP_04962647.1| transcriptional activator RfaH, putative [Vibrio cholerae AM-19226]
 gi|262190284|ref|ZP_06048553.1| transcriptional activator RfaH [Vibrio cholerae CT 5369-93]
 gi|150422224|gb|EDN14188.1| transcriptional activator RfaH, putative [Vibrio cholerae AM-19226]
 gi|262033832|gb|EEY52303.1| transcriptional activator RfaH [Vibrio cholerae CT 5369-93]
          Length = 165

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++        + T++ T  V+ F+  G +P  +    I   + Q++    +  +  
Sbjct: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKHTTKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ V V+ G FA    I    D +  R  + V +  +  P+ +    
Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIENTD 161


>gi|29347135|ref|NP_810638.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339034|gb|AAO76832.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 192

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 12/177 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E +       G+++      +P ++       R+        
Sbjct: 24  SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQEFHQWSDRRKLVTSVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120
           P  V +     +++      T      +    +P+ + D ++      ++ + +   ++S
Sbjct: 75  PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
                GE+V V  GP     G + NVD  KS++ V + + G    V++    VE I+
Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPVGYVEPIM 189


>gi|304398184|ref|ZP_07380059.1| NusG antitermination factor [Pantoea sp. aB]
 gi|304354470|gb|EFM18842.1| NusG antitermination factor [Pantoea sp. aB]
          Length = 162

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   ME-SWYLLYCKRGQLLRAKEHLER---------QEVHCLSPMIALEKIVRGKRTTVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P+ V  + IE +   V   +  P + 
Sbjct: 51  FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPSAVIEALETDVPQILLDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V +++G F     I    D E  R  + + +  +     +   Q  K+
Sbjct: 110 --PQSGDEVVITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRKL 162


>gi|298387543|ref|ZP_06997095.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298259750|gb|EFI02622.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 192

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      IP ++ +     R+        
Sbjct: 24  SKRWYVALVRMHHEKKVSE----RLDKMGIEN-----FIPVQQELHQWSDRRKMITSVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120
           P  V +     +++      T      +    +P+ + D ++      ++ + +   ++S
Sbjct: 75  PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSAESVSMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                GE+V V  GP     G + NVD  KS++ V + + G    V++    VE I
Sbjct: 135 SPLARGEQVRVIKGPLTGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPIGYVEPI 188


>gi|223934754|ref|ZP_03626674.1| NusG antitermination factor [bacterium Ellin514]
 gi|223896709|gb|EEF63150.1| NusG antitermination factor [bacterium Ellin514]
          Length = 205

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
            P WY V+     E  A  ++            V E   PS R     +   V      F
Sbjct: 31  EPAWYCVRSKPKHEHIAAANLSKL--------QVVETFNPSLRSRKATRRGPVWMTESLF 82

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+  +    ++++  +K T  V   +  G     V    IE +     A   +  S V
Sbjct: 83  PNYIFARF-PFEQMFDEVKYTRGVSSLVHFGTGYPEVPADVIEELRRNFPANELKLSSEV 141

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
               G++V ++        G+V      + RV V + + G+ + VEL  N V
Sbjct: 142 PTA-GDQVTITSRALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192


>gi|260175490|ref|ZP_05761902.1| putative transcriptional regulator [Bacteroides sp. D2]
 gi|315923722|ref|ZP_07919962.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697597|gb|EFS34432.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 186

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G +  V   KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174


>gi|183597388|ref|ZP_02958881.1| hypothetical protein PROSTU_00645 [Providencia stuartii ATCC 25827]
 gi|188023415|gb|EDU61455.1| hypothetical protein PROSTU_00645 [Providencia stuartii ATCC 25827]
          Length = 163

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W+++             I   +      +++     P   +  V +G++   +   
Sbjct: 1   MEK-WHLLYCKRGQ-------IDRAIEHLNRQNVI--CMTPMTEIEKVVRGKRTKVQEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +K    +    TI+ T  V  F+  G +P+ V D  IE +       +  P + 
Sbjct: 51  FPNYLFVKFDHNEIHTTTIQSTRGVSHFVRFGLHPAIVPDEIIELLQQAPLGHLVDPETP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                G+ V +++G FA    I    + E SR  + + I  +     L   Q +K+
Sbjct: 111 TH---GDNVLITEGIFAGIQAIYDEPNGE-SRSILLLNILNKNVSKVLDNTQFKKL 162


>gi|295105769|emb|CBL03312.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b]
          Length = 532

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 4/149 (2%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+ QV +  E    +     +S   L+    E  +P    +   +G    + R  FPGY
Sbjct: 2   WYVAQVQAGRESATRDLCLRLVSSDVLE----ECFMPEYETMWRVRGEWKLARRLLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +       +++   +   P  I  LG  EN       + +               S  + 
Sbjct: 58  LFFVTGDAEELNKELLRVPLPIRLLGNEENSFFPLTKKEQDWFLSFMDGEHIVRMSEGYI 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRV 153
            G++V V+ GP   F G ++ +D  K R 
Sbjct: 118 TGDKVTVTRGPLMGFEGDIRKIDRHKRRA 146


>gi|237716030|ref|ZP_04546511.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237722185|ref|ZP_04552666.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262407644|ref|ZP_06084192.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294808414|ref|ZP_06767167.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229443677|gb|EEO49468.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229447995|gb|EEO53786.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262354452|gb|EEZ03544.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294444342|gb|EFG13056.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 192

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLDKIGIEN-----FVPVQQEIHQWSDRRKMVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHVNPKERKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G + NVD  KS++ V + + G
Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174


>gi|323483116|ref|ZP_08088508.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum
           WAL-14163]
 gi|323403536|gb|EGA95842.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum
           WAL-14163]
          Length = 249

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 24/190 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV    E+K  E I  ++S   ++    E  IP +  V   +GR    E   FPGY
Sbjct: 50  WYVIQVQGGQEEKTAELIRSQVSAHVME----ECFIPKKERVKKFRGRWQRVEEILFPGY 105

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113
           V       ++++  +K+  ++   L  G         E E ++  +              
Sbjct: 106 VFTVTDKPEELFLELKNVLRLTKILQDGAFYFIPLSKEEETLIQSIGDNCHITRISRVQV 165

Query: 114 ---------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
                     +   ++   E G  + + DGP  +  G +   +  K    V++   G   
Sbjct: 166 KKKIEPAAKTEVVFNNRMLESGREIMIIDGPLKNQEGRIVKYNLHKREATVKLRFMGNEM 225

Query: 165 PVELAYNQVE 174
            + LA   VE
Sbjct: 226 ELRLAIELVE 235


>gi|291615750|ref|YP_003518492.1| RfaH [Pantoea ananatis LMG 20103]
 gi|291150780|gb|ADD75364.1| RfaH [Pantoea ananatis LMG 20103]
 gi|327396015|dbj|BAK13437.1| transcriptional activator RfaH [Pantoea ananatis AJ13355]
          Length = 182

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +              +   P   +  + +G++       
Sbjct: 21  ME-SWYLLYCKRGQLLRAKEHLER---------QEVKCLSPMIAMEKIVRGKRTTVSEPL 70

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P+ V    I+ +   V   +  P + 
Sbjct: 71  FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPALVIDALQTDVPQTLLDPET- 129

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              + G+ V +++G F     I    D E +R  + + +  +     +   Q  K
Sbjct: 130 --PQNGDEVIITEGTFEGLRAIFSEPDGE-ARSILLLNLLNKQVVRSVDNRQFRK 181


>gi|29347066|ref|NP_810569.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338964|gb|AAO76763.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 192

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 12/177 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E +       G+++      +P ++ +     R+        
Sbjct: 24  SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQELHQWSDRRKLVTSVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120
           P  V + A   +++      T      +    +P+ + D ++      ++ + +   ++S
Sbjct: 75  PMMVFVHADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
                GE+V V  GP     G + NVD  +S++ V + + G    V++    VE I+
Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-RSKIAVRLNMLGCAC-VDMPVGYVEPIM 189


>gi|110597105|ref|ZP_01385394.1| transcription antitermination protein NusG:KOW [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341296|gb|EAT59761.1| transcription antitermination protein NusG:KOW [Chlorobium
           ferrooxidans DSM 13031]
          Length = 194

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY V V S CEK+    +                 +P          RK       F G
Sbjct: 8   RWYAVYVRSRCEKQVYRMLAE---------KQITTFLPLLETWKQWSDRKKKVSEPLFRG 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +   M       + +T  V+ F+G G+ PS + + +I+ +   V        +    
Sbjct: 59  YVFVNIDMRHDHLPVL-ETEGVVKFIGIGKVPSVIAEKDIDWLRKLVREPEAIGRTVDSI 117

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160
            VG++V V  GPF  F G+V     E   V         VEV IF
Sbjct: 118 PVGQKVKVLAGPFKDFEGVVLKHGRETRLVVFFDSIMQGVEVSIF 162


>gi|121606024|ref|YP_983353.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2]
 gi|120594993|gb|ABM38432.1| transcription antitermination protein nusG [Polaromonas
           naphthalenivorans CJ2]
          Length = 182

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 12/171 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+       E          ++   L     +  +P  + +              FP Y
Sbjct: 21  WYLTYARPRLE---------TVALQNLQQQGFDAYLPLYKSLKKTDAGIKAIFVPMFPRY 71

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-FF 123
           V ++     +    ++ T  V   +  G   + +    ++ I    +      V+ +   
Sbjct: 72  VFVRPSHPAQSIAPVRSTRGVAQLVQFGNELATIRADALDAIRQFEQQRNAADVAELSSL 131

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             G  V   +   +   G+VK+V     RV V +   GR   V + ++Q++
Sbjct: 132 RPGHAVRFHNPALSGLEGLVKSVSS--LRVTVLLEFMGREQLVSVEHHQLK 180


>gi|300714828|ref|YP_003739631.1| Transcriptional acivator RfaH [Erwinia billingiae Eb661]
 gi|299060664|emb|CAX57771.1| Transcriptional acivator RfaH [Erwinia billingiae Eb661]
          Length = 162

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++   +   
Sbjct: 1   ME-SWYLLYCKRGQLLRAKEHLER---------QSVHCLSPMIALEKLVRGKRTQVDEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P+ V    I  +       +  P   
Sbjct: 51  FPNYLFIEFDPEAIHTTTISATRGVSHFVRFGSLPASVPHDVIMALQTDTPITMVDPDV- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+RV ++ G F     I    D E +R  + + +  +     L   Q  K+
Sbjct: 110 --PQPGDRVLITCGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQITRSLDNKQFHKL 162


>gi|119358362|ref|YP_913006.1| transcription antitermination protein nusG [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355711|gb|ABL66582.1| transcription antitermination protein nusG [Chlorobium
           phaeobacteroides DSM 266]
          Length = 180

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 4   RWYIVQVYSNCEKKAVES-IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            WY V V S  EKK  +  +   L             +P    +     RK       F 
Sbjct: 8   HWYAVYVRSRHEKKVHQLFLEKEL----------TSFLPLLETMRQWSDRKKKVYEPLFR 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV +   M       + DT  VI F+G G+ PS +   +IE +   V  +     +   
Sbjct: 58  GYVFVNIAMRRDHIRVL-DTDGVIKFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDA 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160
              G+ V V  GPF  F G+V     E   V         VE+ IF
Sbjct: 117 LPPGQLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEISIF 162


>gi|237727954|ref|ZP_04558435.1| transcriptional activator RfaH [Citrobacter sp. 30_2]
 gi|226910403|gb|EEH96321.1| transcriptional activator RfaH [Citrobacter sp. 30_2]
          Length = 162

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKIVRGKRTTVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G  P+ V    I  +       +  P +    +
Sbjct: 55  MFVEFDPEVIHTTTINATRGVSHFVRFGATPATVPSPVIHQLSIYKPEGIVDPQT---PQ 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      KI
Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKEVKQSVKNTGFRKI 162


>gi|238798045|ref|ZP_04641534.1| Transcriptional activator rfaH [Yersinia mollaretii ATCC 43969]
 gi|238718148|gb|EEQ09975.1| Transcriptional activator rfaH [Yersinia mollaretii ATCC 43969]
          Length = 162

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+++        +A E +  +               P   +  + +G++       FP
Sbjct: 2   KQWHLLYCKRGQLLRAKEHLERQAVN---------CWTPLVIIEKIVRGKRAEVTEPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++    D    TI  T  V  F+  G  P+ +    I  + +     +  P   + 
Sbjct: 53  NYLFVEFNAEDIHTTTISATRGVSHFVRFGAQPAVIPAIVITEMQSHTADKIIAPEVPL- 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G FA    I    D E +R  + + +        L   Q EK
Sbjct: 112 --PGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVIQSLENRQFEK 161


>gi|157368505|ref|YP_001476494.1| transcriptional activator RfaH [Serratia proteamaculans 568]
 gi|157320269|gb|ABV39366.1| transcriptional acivator RfaH [Serratia proteamaculans 568]
          Length = 162

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G+++      
Sbjct: 1   ME-SWYLLYCKRGQLLRAQEHLERQEVN---------CLSPIITLEKIVRGKRIAVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    IE +          P + 
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSHFVRFGSTPTTIPQKVIEELQTHTCETYVDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V + DG F     I    D E +R  + + +  +     +   Q +K+
Sbjct: 110 --PQPGDSVLIVDGVFEGLQAIYTEPDGE-ARSMLLLNLINKQVSQSVDNRQFQKL 162


>gi|194334318|ref|YP_002016178.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
 gi|194312136|gb|ACF46531.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271]
          Length = 172

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 11/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V V S  EKK             L        +P          RK       F GY
Sbjct: 9   WYAVYVRSRFEKKV---------HLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGY 59

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V ++          + DT  V+ F+G G   S + D +IE I         R        
Sbjct: 60  VFVRIHYRQDHPFVL-DTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLP 118

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V V  GPF    G+V+  D  +S++ V      +   V +    +  +
Sbjct: 119 PGKQVKVIAGPFVGLEGVVRK-DGRESKLVVYFESIMQGIEVTINAEYLSPL 169


>gi|224369771|ref|YP_002603935.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223692488|gb|ACN15771.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 174

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 11/174 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +   S  E      I              E+ +P  +  S RK RK+  +   F
Sbjct: 4   EKSWYTLLTKSRFENVVFNDIQK---------KSIEVFLPKIKKRSQRKDRKLMIDVPLF 54

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+ +   +    + ++  T   +  LG    P PV  + IE +       +     ++
Sbjct: 55  PGYLFVNITLDPVTHLSVVKTTGAVRLLGYSSGPVPVPSAHIESLKIVTGTGLDVVSGTI 114

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + GERV V  GPF+   G        K RV +++   G+   VE+    +E
Sbjct: 115 NTLQKGERVLVVRGPFSGVKGEFLRHKG-KDRVIIKIETLGQFAGVEIDREDLE 167


>gi|84516255|ref|ZP_01003615.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53]
 gi|84509951|gb|EAQ06408.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53]
          Length = 171

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 3/152 (1%)

Query: 26  LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
           ++   L+        P+E     R  + V  +   FPGYV ++          +  T  +
Sbjct: 22  MALRNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAASGGVRAVNSTRGI 81

Query: 86  IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
              +  G+ P+ V    I  +  +       P        G+ V + DGPFA F   V  
Sbjct: 82  TKLVTLGQGPAIVPAGLIAALRIRFAPPDITPAPQFDQ--GDWVRILDGPFAEFVAQV-E 138

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
                 RV++ + + GR T V +    +++ V
Sbjct: 139 ATPAAERVYLLIDLMGRATRVAVDARSLKREV 170


>gi|170026148|ref|YP_001722653.1| transcriptional activator RfaH [Yersinia pseudotuberculosis YPIII]
 gi|169752682|gb|ACA70200.1| transcriptional acivator RfaH [Yersinia pseudotuberculosis YPIII]
          Length = 161

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++        +A E +  +               P   +  + +G+++      FP
Sbjct: 2   KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+  +    +    T+  T  V  F+  G  P+ +  + I  +       +  P     
Sbjct: 53  NYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEV--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + G+ V + DG FA    I    D E +R  + + +        L   Q EK
Sbjct: 110 PKPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161


>gi|283834601|ref|ZP_06354342.1| transcriptional activator RfaH [Citrobacter youngae ATCC 29220]
 gi|291069730|gb|EFE07839.1| transcriptional activator RfaH [Citrobacter youngae ATCC 29220]
          Length = 162

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +              IP   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLIPMITLEKMVRGKRTTVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G  P+ V    I  +       +  P +     
Sbjct: 55  MFVEFDPEVIHTTTINATRGVSHFVRFGAAPATVPSPVIHQLSIYKPEGIVDPET---PH 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      KI
Sbjct: 112 PGDSVIITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKEVKQSVKNTGFRKI 162


>gi|51594618|ref|YP_068809.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP
           32953]
 gi|153948031|ref|YP_001399276.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP
           31758]
 gi|186893619|ref|YP_001870731.1| transcriptional activator RfaH [Yersinia pseudotuberculosis PB1/+]
 gi|51587900|emb|CAH19503.1| putative regulatory protein [Yersinia pseudotuberculosis IP 32953]
 gi|152959526|gb|ABS46987.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP
           31758]
 gi|186696645|gb|ACC87274.1| transcriptional acivator RfaH [Yersinia pseudotuberculosis PB1/+]
          Length = 162

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++        +A E +  +               P   +  + +G+++      FP
Sbjct: 2   KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+  +    +    T+  T  V  F+  G  P+ +  + I  +       +  P     
Sbjct: 53  NYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEV--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + G+ V + DG FA    I    D E +R  + + +        L   Q EK
Sbjct: 110 PKPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161


>gi|150396868|ref|YP_001327335.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
 gi|150028383|gb|ABR60500.1| NusG antitermination factor [Sinorhizobium medicae WSM419]
          Length = 219

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 16/178 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV--SVRKGRKVNSERRFFP 62
           W+ ++V++  EK   +S+     R           +P  +      R             
Sbjct: 52  WFALRVWTGREKTVEKSLDIMAVR---------SLVPMRKGPDLRRRGRVIEGQMMPVIH 102

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI--MNQVEAAVQRPVSS 120
           GYVL++ +   +    +     VI  LG  E P  ++D E+     + +           
Sbjct: 103 GYVLVQMMALSEYLAGLLGVEHVIDVLGGCERPMRLSDKEVNRFNGLARNGNFDWERPVD 162

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSR--VHVEVVIFGRVTPVELAYNQVEKI 176
           +    GE V ++ GPF      V    + K R  V V +   G   PV +    ++K+
Sbjct: 163 LVVRAGEPVLITAGPFCDRRATVITPSK-KGRGDVVVSIDFMGGEVPVTVPLALLKKL 219


>gi|153806452|ref|ZP_01959120.1| hypothetical protein BACCAC_00716 [Bacteroides caccae ATCC 43185]
 gi|149131129|gb|EDM22335.1| hypothetical protein BACCAC_00716 [Bacteroides caccae ATCC 43185]
          Length = 190

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL++ G+++      +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVAE----RLNKMGIEN-----FVPVQQELHQWSDRRKMVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120
           P  V +     ++       T      +    +P+ + D ++      +  +     ++S
Sbjct: 75  PMMVFVHVDAKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSKYVISMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP     G +  VD  KS++ V + + G
Sbjct: 135 APLARGEKVRVIKGPLTGLVGELVTVDG-KSKIAVRLNMLG 174


>gi|254283967|ref|ZP_04958935.1| Transcription termination factor nusG domain protein [gamma
           proteobacterium NOR51-B]
 gi|219680170|gb|EED36519.1| Transcription termination factor nusG domain protein [gamma
           proteobacterium NOR51-B]
          Length = 214

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V      E  A   +                  P  ++   ++G+        FPG
Sbjct: 22  RWYVVASKPRSEGVAKSQLER---------QGFVTCAPRIKLRKRQRGKWQQVIEPLFPG 72

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +   +       I+ T   IG +  G    PV ++ ++ +++  E+      S   F
Sbjct: 73  YLFVALRLGVDDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSIGESPD---ASEAVF 129

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           + G+ V    GPF   +GI   + + + R  V + + G
Sbjct: 130 QPGQAVRFEAGPFEGLSGIF-KMPKGQDRAEVLITLLG 166


>gi|145220255|ref|YP_001130964.1| transcription antitermination protein nusG [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206419|gb|ABP37462.1| transcription antitermination protein nusG [Chlorobium
           phaeovibrioides DSM 265]
          Length = 169

 Score = 77.4 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 10/158 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P WY V V S  EKK  + +                 +P    +     RK       F 
Sbjct: 7   PHWYAVYVRSRYEKKVHQWLEE---------KELTSFLPLLETMRQWSDRKKKVYEPLFR 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV +   M    +  + +T  V+ F+G G NPS +++ +IE +   V        +   
Sbjct: 58  GYVFVNIDM-KHEHVKVLETEGVVKFIGIGRNPSVISERDIEWLRTLVREPDALHQTVST 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
             VG +V V  GPF    GIV     E   +     I 
Sbjct: 117 MPVGRKVRVLAGPFKDLEGIVVKQGREDRMIIFFDSIM 154


>gi|326202988|ref|ZP_08192855.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782]
 gi|325987065|gb|EGD47894.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782]
          Length = 176

 Score = 77.4 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 11/181 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WYI+ V S  E++  + +         D+      IP    +    G      +  
Sbjct: 1   MGMYWYILFVKSGREQRVQQYMNKIA-----DNETANPFIPLHEFLIKISGVVKRELKPL 55

Query: 61  FPGYVLIKAVMTDKVYHT-----IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           FPGYV +++VM    +       I  +  ++  L   +    V +SE + ++N       
Sbjct: 56  FPGYVFVESVMPGDEFLKKLNSRIHSSSDIVKVLKYSDTEIEVRESEKQMLLNLCNKRHC 115

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              S      G+R+ V++GP      I++ ++  K +  +E+   G    V +A   VEK
Sbjct: 116 IESSR-GIIRGDRIYVTNGPLKGRESIIRKINRHKKQALIEMDFMGDKRIVNVALEIVEK 174

Query: 176 I 176
           +
Sbjct: 175 V 175


>gi|300713325|ref|YP_003739364.1| transcriptional activator [Erwinia billingiae Eb661]
 gi|299060396|emb|CAX53646.1| Transcriptional activator [Erwinia billingiae Eb661]
          Length = 184

 Score = 77.4 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 11/166 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62
            WY++      EK+A +++          +      +P   V SV             FP
Sbjct: 15  NWYVLITKYAQEKRAQDNLI---------NQGVNCWLPRITVHSVDARGGGGGSEVLAFP 65

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+            TIK T  + G +     P+ +  +E+  +  ++EA       S  
Sbjct: 66  RYLFAHFDAEIIHTTTIKATRGISGIVSFNNTPAIMDGAELAALRMRMEAGAALAGRSPD 125

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
            E GE V + +G F     I    D  K R  + + +FGR+T  ++
Sbjct: 126 PEHGETVTIENGAFDGLEAIWHQPDGAK-RAILLINLFGRLTEAKI 170


>gi|332181491|gb|AEE17179.1| NGN domain-containing protein [Treponema brennaborense DSM 12168]
          Length = 218

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             +Y VQV +  E+  + SI  +L  + +         P  R++  R+G +VN     FP
Sbjct: 35  MNYYAVQVRTLKEEAYIASISRQLEDTEIKIQF---LFPKRRLIIRRQGEQVNELMPLFP 91

Query: 63  GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           GYV I+   ++ ++Y+  +       FL   +N   ++  ++  + + +        S V
Sbjct: 92  GYVFIETEKLSTELYNVARSAKYFSRFLPNNQNICSLSGKDLAVLKHFIGFGAVAESSKV 151

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +F+  +R+ V+ GP     G +  VD  K R  V++        ++LA++ + K
Sbjct: 152 YFDENDRIVVTSGPLHGLEGSIVKVDRRKHRAKVKLDFANECFLLDLAFDIIGK 205


>gi|227327314|ref|ZP_03831338.1| transcriptional activator RfaH [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 162

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   MEA-WYLLYCKRGQLLRAKEHLER---------QDVNCVSPMITLDKIVRGKRTEVCEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    I+ +  +    +  P   
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPIQGITDP--- 107

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  + G+ V ++DG F+    I    D E +R  + + +  +     +   +  K
Sbjct: 108 LTPQPGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161


>gi|86144030|ref|ZP_01062368.1| NusG antitermination factor [Leeuwenhoekiella blandensis MED217]
 gi|85829490|gb|EAQ47954.1| NusG antitermination factor [Leeuwenhoekiella blandensis MED217]
          Length = 158

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 15/173 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V    EKK   ++           L  ++  P+   V V   RK   +   F 
Sbjct: 1   MNWYVLYVKPQSEKKVASALEK---------LGVKVFCPTLEEVRVWSDRKKKIQVPLFK 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV +   + +     +   P V+ +L     P+ V D EI  I + +       V    
Sbjct: 52  SYVFVC--LPNTERQQVFAVPGVVRYLFWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRT 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  G  V ++ G F    GIV+ V   + R+ + +   G    VE     + K
Sbjct: 110 YTPGTEVKIAAGHFKGQKGIVQEV--GRKRLKMVIKSLG--VIVEARLKDLVK 158


>gi|322834842|ref|YP_004214869.1| transcriptional acivator RfaH [Rahnella sp. Y9602]
 gi|321170043|gb|ADW75742.1| transcriptional acivator RfaH [Rahnella sp. Y9602]
          Length = 179

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +GR+       
Sbjct: 18  ME-SWYLLYCKRGQLLRAKEHLER---------QNVNCLTPMITLEKLVRGRRTAVSEPL 67

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G   + V    I+ +M      ++ P + 
Sbjct: 68  FPNYMFIEFDPERIHTTTINATRGVSHFIRFGAKLATVQPDVIKQLMEPPTIEIRDPDT- 126

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                G++V ++DG FA    I    D E   + + + +  +     +     +KI
Sbjct: 127 --PYEGDQVVITDGIFAGIEAIYTEPDGEARSL-LMLNLINQPVRQSIENTHFQKI 179


>gi|152972825|ref|YP_001337971.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892438|ref|YP_002917172.1| transcriptional activator RfaH [Klebsiella pneumoniae NTUH-K2044]
 gi|262040850|ref|ZP_06014076.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997403|ref|ZP_08302765.1| transcriptional activator RfaH [Klebsiella sp. MS 92-3]
 gi|150957674|gb|ABR79704.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544754|dbj|BAH61105.1| transcriptional activator [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041739|gb|EEW42784.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539090|gb|EGF65127.1| transcriptional activator RfaH [Klebsiella sp. MS 92-3]
          Length = 162

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +              +P+  +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQSVN---------CLMPTIALEKIIRGKRTMVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I+         TI  T  V  F+  G  P+ V  + I  +       +  P +     
Sbjct: 55  LFIEFDPEVIHTTTISATRGVNNFVRFGALPAIVPSAVIHQLSIYKPEGITDPET---PH 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V ++DG F     I    D E +R  + + +  +     +     +KI
Sbjct: 112 EGDSVLITDGAFEGLEAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTDFQKI 162


>gi|22124375|ref|NP_667798.1| transcriptional activator RfaH [Yersinia pestis KIM 10]
 gi|45443029|ref|NP_994568.1| transcriptional activator RfaH [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108809431|ref|YP_653347.1| transcriptional activator RfaH [Yersinia pestis Antiqua]
 gi|108810360|ref|YP_646127.1| transcriptional activator RfaH [Yersinia pestis Nepal516]
 gi|145600640|ref|YP_001164716.1| transcriptional activator RfaH [Yersinia pestis Pestoides F]
 gi|153997171|ref|ZP_02022304.1| DNA-binding transcriptional antiterminator [Yersinia pestis
           CA88-4125]
 gi|162421310|ref|YP_001606389.1| transcriptional activator RfaH [Yersinia pestis Angola]
 gi|165926271|ref|ZP_02222103.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939165|ref|ZP_02227716.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166012151|ref|ZP_02233049.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213613|ref|ZP_02239648.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398803|ref|ZP_02304327.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420836|ref|ZP_02312589.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426298|ref|ZP_02318051.1| transcriptional activator RfaH [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468668|ref|ZP_02333372.1| transcriptional activator RfaH [Yersinia pestis FV-1]
 gi|218930774|ref|YP_002348649.1| transcriptional activator RfaH [Yersinia pestis CO92]
 gi|229839454|ref|ZP_04459613.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896688|ref|ZP_04511854.1| DNA-binding transcriptional antiterminator [Yersinia pestis
           Pestoides A]
 gi|229900018|ref|ZP_04515155.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900535|ref|ZP_04515664.1| DNA-binding transcriptional antiterminator [Yersinia pestis
           Nepal516]
 gi|270488890|ref|ZP_06205964.1| transcriptional activator RfaH [Yersinia pestis KIM D27]
 gi|294505437|ref|YP_003569499.1| transcriptional activator RfaH [Yersinia pestis Z176003]
 gi|21957154|gb|AAM84049.1|AE013646_9 transcriptional activator [Yersinia pestis KIM 10]
 gi|45437896|gb|AAS63445.1| putative regulatory protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774008|gb|ABG16527.1| regulatory protein [Yersinia pestis Nepal516]
 gi|108781344|gb|ABG15402.1| putative regulatory protein [Yersinia pestis Antiqua]
 gi|115349385|emb|CAL22357.1| putative regulatory protein [Yersinia pestis CO92]
 gi|145212336|gb|ABP41743.1| regulatory protein [Yersinia pestis Pestoides F]
 gi|149289477|gb|EDM39555.1| DNA-binding transcriptional antiterminator [Yersinia pestis
           CA88-4125]
 gi|162354125|gb|ABX88073.1| transcriptional activator RfaH [Yersinia pestis Angola]
 gi|165912938|gb|EDR31564.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921795|gb|EDR38992.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165988952|gb|EDR41253.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205286|gb|EDR49766.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960965|gb|EDR56986.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051307|gb|EDR62715.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054817|gb|EDR64621.1| transcriptional activator RfaH [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229682554|gb|EEO78641.1| DNA-binding transcriptional antiterminator [Yersinia pestis
           Nepal516]
 gi|229686798|gb|EEO78877.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695820|gb|EEO85867.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700331|gb|EEO88364.1| DNA-binding transcriptional antiterminator [Yersinia pestis
           Pestoides A]
 gi|262363502|gb|ACY60223.1| transcriptional activator RfaH [Yersinia pestis D106004]
 gi|262367431|gb|ACY63988.1| transcriptional activator RfaH [Yersinia pestis D182038]
 gi|270337394|gb|EFA48171.1| transcriptional activator RfaH [Yersinia pestis KIM D27]
 gi|294355896|gb|ADE66237.1| transcriptional activator RfaH [Yersinia pestis Z176003]
 gi|320013633|gb|ADV97204.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 162

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++        +A E +  +               P   +  + +G+++      FP
Sbjct: 2   KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+  +    +    T+  T     F+  G  P+ +  + I  +       +  P     
Sbjct: 53  NYLFAEFDPENIHTTTVSATRGGSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEV--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + G+ V + DG FA    I    D E +R  + + +        L   Q EK
Sbjct: 110 PKPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161


>gi|253690409|ref|YP_003019599.1| transcriptional acivator RfaH [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756987|gb|ACT15063.1| transcriptional acivator RfaH [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 162

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   MEA-WYLLYCKRGQLLRAKEHLER---------QDVTCVSPMITLDKIVRGKRTEVCEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    I+ +  +    +  P   
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPLQVITDP--- 107

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  + G+ V ++DG F+    I    D E +R  + + +  +     +   +  K
Sbjct: 108 LTPQPGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161


>gi|153806198|ref|ZP_01958866.1| hypothetical protein BACCAC_00453 [Bacteroides caccae ATCC 43185]
 gi|149130875|gb|EDM22081.1| hypothetical protein BACCAC_00453 [Bacteroides caccae ATCC 43185]
          Length = 197

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 12/176 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKLVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVTPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                GE+V V  GP +   G +  V   KS++ V + + G    V++    VE I
Sbjct: 135 SPLARGEKVRVIKGPLSGLVGELVTV-GSKSKIAVRLNMLGCAC-VDMPIGYVEPI 188


>gi|258622004|ref|ZP_05717033.1| transcriptional activator RfaH [Vibrio mimicus VM573]
 gi|258585757|gb|EEW10477.1| transcriptional activator RfaH [Vibrio mimicus VM573]
          Length = 165

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKMHLENQDVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++    +   + T++ T  V+ F+  G +P  +    I   + Q++       +  
Sbjct: 53  SYMFVRFDFEEGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLEGSAKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ V V+ G FA    I +  D +  R  + V +  +  P+ +    
Sbjct: 112 LPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPMSIENTD 161


>gi|21673456|ref|NP_661521.1| NusG/RfaH family transcriptional regulator [Chlorobium tepidum TLS]
 gi|21646560|gb|AAM71863.1| transcriptional regulator, NusG/RfaH family [Chlorobium tepidum
           TLS]
          Length = 200

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V V S  EKK  + +                 +P    +     RK   E     GY
Sbjct: 11  WYAVYVRSRYEKKVHQYLLE---------KGLSSFLPLIETLRQWSDRKKRVEEPLIRGY 61

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +      +  H + +T  V+ F+G G+ PS +++ +I+ +            + +   
Sbjct: 62  VFVNINYHKEHVHVL-ETDGVVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIP 120

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG++V V  GPF    G+VK  +  + R+ V      +   + ++   +  I
Sbjct: 121 VGKKVRVLAGPFKDMEGVVKK-EGREERLLVYFDSIMQGVEITISPELLAPI 171


>gi|237713545|ref|ZP_04544026.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407330|ref|ZP_06083878.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446527|gb|EEO52318.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354138|gb|EEZ03230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 198

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDETVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP +   G +  V   KS++ V + + G
Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174


>gi|206890959|ref|YP_002248310.1| transcription termination factor NusG domain protein
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742897|gb|ACI21954.1| transcription termination factor NusG domain protein
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 169

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 10/171 (5%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY + V S  E K  +    RL+++G++       +P+   +   K RK   +   FPG
Sbjct: 7   NWYCIYVKSRHEFKVFD----RLTKAGIE-----AFLPAVERLRRWKDRKKLIKFPLFPG 57

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +    + ++   +  TP V+ F+ T          E    + +     +      + 
Sbjct: 58  YLFVCIEKSYELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAIENGREIDPYPYL 117

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           + G+RV +  GP A   GI+K   E++    + + I  R   V++  ++VE
Sbjct: 118 KEGQRVKIKSGPLAGATGILKK-KEKQHFFIISIHILQRAVSVKIDASEVE 167


>gi|227114329|ref|ZP_03827985.1| transcriptional activator RfaH [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 162

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   MEA-WYLLYCKRGQLLRAKEHLER---------QDVTCVSPMITLDKIVRGKRTEVCEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    I+ +  +    +  P   
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPVQGIIDP--- 107

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  + G+ V ++DG F+    I    D E +R  + + +  +     +   +  K
Sbjct: 108 LTPQPGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161


>gi|317053793|ref|YP_004118927.1| NusG antitermination factor [Pantoea sp. At-9b]
 gi|316952898|gb|ADU72371.1| NusG antitermination factor [Pantoea sp. At-9b]
          Length = 170

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59
           M   WY+ Q     EK+A + +                  P    V ++  G +  +E+ 
Sbjct: 1   ME-NWYVAQTKYAQEKRAQQQLL---------SQGVTCLFPVFSEVRLQNGGIRRIAEQP 50

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            FP Y+ ++          IK T  V   +  G  PS V DS I  +        + P++
Sbjct: 51  LFPNYIFVRFDPEVVHTTAIKATRGVSSLISFGGLPSVVPDSVIIRLNQ---GWERAPLN 107

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +     G+RV + DG F     +    D  K R  + + +  R   V + 
Sbjct: 108 TDAPVHGDRVVIRDGAFEGLEAVWYEPDGLK-RAMLLLTLMNREVRVPVE 156


>gi|323691443|ref|ZP_08105715.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum
           WAL-14673]
 gi|323504489|gb|EGB20279.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum
           WAL-14673]
          Length = 213

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++QV    E+K  E I  +L+    D  + E  IP +  V   KGR    E   FPGY
Sbjct: 20  WYVIQVQGGQEEKTAELIKKQLTL--CDDSLRECFIPKKERVKKFKGRWQQVEELLFPGY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V   +   +++Y  +K   ++   L  G         + E  +  +         S    
Sbjct: 78  VFADSGNAEELYRRLKQVGRLTKVLQDGNFLFLSLSEDEEQRIKAIGDCRHVTRVSKVRV 137

Query: 125 VG-------------ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           VG             + V V +GP     G V  V+  K  V V++   GR+  V+L   
Sbjct: 138 VGGEYSGRADGIDRGKNVVVREGPLKGLEGYVTKVNLHKREVTVQMPFAGRMVDVKLGIE 197

Query: 172 QV-EK 175
            V EK
Sbjct: 198 LVDEK 202


>gi|291326731|ref|ZP_06125611.2| transcriptional activator RfaH [Providencia rettgeri DSM 1131]
 gi|291313040|gb|EFE53493.1| transcriptional activator RfaH [Providencia rettgeri DSM 1131]
          Length = 169

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++             I   +      ++V     P   +  V +G++V  +   
Sbjct: 6   MEK-WYLLYCKRGQ-------IERAMEHLNRQNVV--CMTPMTEMEKVVRGKRVTVQEAL 55

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +K    +    TI+ T  V  F+  G+ P+ V +  IE +     +    P   
Sbjct: 56  FPNYLFVKFDHNEIHTTTIQSTRGVSHFIRFGQFPTEVPEEIIELLQQTPVSYSVAPDI- 114

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              + G++V +++G FA    I    + E  R  + + I  +  P  +   Q +K
Sbjct: 115 --PKHGDQVTITEGIFAGVQAIFDEPNGE-YRSILLLNILNKSVPKVVDNTQFKK 166


>gi|157376165|ref|YP_001474765.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
 gi|157318539|gb|ABV37637.1| NusG antitermination factor [Shewanella sediminis HAW-EB3]
          Length = 179

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 23/185 (12%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E +A++++              E  +P+  V   +KG+    +   FP
Sbjct: 2   KAWYLLYCKPRGESRALQNL---------TIQNIETYLPTIAVKKEQKGQVSVVKTSLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA---------- 112
            Y+ IK    +     I  T  V+  +G  E  +P+ D  I+ I  Q             
Sbjct: 53  SYLFIKFDPKEVSVSRINSTRGVVQVVGCKELMTPIDDGIIDAIRQQEYELNSMTQGSTD 112

Query: 113 ---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
              +            GE+V +++G F++  GI +    +K R HV   I G +  V++ 
Sbjct: 113 IGSSSNEEFEPKVINPGEKVRLTEGVFSTLEGIFQEKSGDK-RCHVLFEIMGEMKSVKIP 171

Query: 170 YNQVE 174
            + V+
Sbjct: 172 MSIVK 176


>gi|295095157|emb|CBK84247.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 163

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  +++GR+       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGRRTTVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +   V    +         
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGAHPARVPSSVIHQL--SVYQQPEDITDPETPY 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      K+
Sbjct: 113 AGDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKEVLQSVKNTDFRKV 163


>gi|296105280|ref|YP_003615426.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059739|gb|ADF64477.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 163

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  +++G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGKRTTVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +   V    +         
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGAHPATVPSTVIHQL--SVYQQPEDITDPETPY 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      K+
Sbjct: 113 AGDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKQVLQSVKNTDFRKV 163


>gi|29346006|ref|NP_809509.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568593|ref|ZP_04846004.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29337900|gb|AAO75703.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251842666|gb|EES70746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 192

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 12/176 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E +           +  E  +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVSEYLNK---------VGIENFVPVQKEIHQWSDRRKLVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   +++      T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHADPKERMEVLNFTTVSRYMVMRGESSPAVIPDDQMARFRFMLDYSDETVCMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                GE+V V  GP     G + NVD  KS++ V + + G    V++    VE I
Sbjct: 135 SPLARGEKVQVIKGPLQGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPIGYVEPI 188


>gi|329755796|gb|AEC04347.1| NusG antitermination factor [Chitinophaga sancti]
          Length = 174

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y   EKK    +        L  ++    +P    V     R   +E   FP 
Sbjct: 14  KWYVLYTYPLFEKKIGRQLA-------LIDII--HYLPVRTEVRKWSDRLKRTEVPLFPN 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +K  + +K        P V+ F+       PV++ +I  I     +     + SV+ 
Sbjct: 65  YIFVKTNLLNKTPIL--SIPGVVRFVSIEGKAIPVSEDDINKIRQIEASRQDVEIESVYN 122

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRVTPVELAYNQVEKI 176
             G+++ + +G F+   G    + +  +R+ V + +    +   VE++   +EK+
Sbjct: 123 -TGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKL 173


>gi|78187519|ref|YP_375562.1| NusG antitermination factor [Chlorobium luteolum DSM 273]
 gi|78167421|gb|ABB24519.1| transcription antitermination protein nusG [Chlorobium luteolum DSM
           273]
          Length = 170

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 3   PRWYIVQVYSNCEKKAVE-SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           P WY V V S  EKK  +  +   L+            +P    V     RK       F
Sbjct: 7   PHWYAVYVRSRYEKKVHQWMLEKELNS----------FLPLLETVRQWSDRKKKVYEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV ++  M    +  + +T  V+ F+G G NPS ++  +IE +   V        +  
Sbjct: 57  RGYVFVQIDM-KHEHVKVLETEGVVKFIGIGRNPSVISPRDIEWLKTLVREPDALHQTVS 115

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
               G++V V  GPF    G+V   +  + R+ V      +   V ++ +
Sbjct: 116 SIPYGKKVRVLAGPFKDLEGVVVK-EGREERLVVFFESIMQGIEVSISPD 164


>gi|304310243|ref|YP_003809841.1| Transcriptional activator RfaH [gamma proteobacterium HdN1]
 gi|301795976|emb|CBL44177.1| Transcriptional activator RfaH [gamma proteobacterium HdN1]
          Length = 157

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 15/167 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++Q   + E  A  ++                  P  +V  +  G+    +   FP
Sbjct: 1   MAWYLMQTRPHQETLAATNLLR---------QGYGCYQPIHQVEKLIAGKLCMKDEALFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ ++     + + TI+ T  V   +  G    PV++  I  +  +     +   +   
Sbjct: 52  GYLFVEIA-AQQSWCTIRSTYGVRSLVCFGGKALPVSELLISQLRARC----ETEQAQCR 106

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           F  G+ V V  GPFA  N + +    E  RV V + +   V  +EL 
Sbjct: 107 FTKGQSVEVKKGPFAGLNAVFQCKKAE-DRVIVLIRLLQSVQAIELP 152


>gi|195941210|ref|ZP_03086592.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4024]
          Length = 163

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 12/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  +++GR+       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGRRTTVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +   V              
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGAHPARVPSSVIHQL--SVYQQPDDITDPETPY 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      K+
Sbjct: 113 AGDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKEVLQSVKNTDFRKV 163


>gi|99034374|ref|ZP_01314395.1| hypothetical protein Wendoof_01000801 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 235

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62
           +WYI++V SNCE+K  + I     R G++    E+ IP E +  V  K +K+ + R+ FP
Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159

Query: 63  GYVLIKAVMTDKVYHTIKDTP---KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +   + D+V + I + P   KV GFL  G  P  + D EI  + N +  A +    
Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219

Query: 120 SVFFEVGERVCVSDG 134
              +E GE+V ++DG
Sbjct: 220 GYGYEKGEKVKINDG 234


>gi|298388205|ref|ZP_06997737.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298259035|gb|EFI01927.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 192

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 12/176 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E +           +  E  +P ++ +     R+   E    
Sbjct: 24  SKRWYVALVRMHHEKKVSEYLNK---------VGIENFVPVQKEIHQWSDRRKLVESVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   +++      T      +    +P+ + D ++      ++ + +     S
Sbjct: 75  PMMVFVHADPKERMEVLNFTTVSRYMVMRGESSPAVIPDDQMARFRFMLDYSDETICMNS 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                GE+V V  GP     G + NVD  KS++ V + + G    V++    VE I
Sbjct: 135 SPLARGEKVQVIKGPLQGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPIGYVEPI 188


>gi|304413123|ref|ZP_07394596.1| Transcription antiterminator [Candidatus Regiella insecticola LSR1]
 gi|304283966|gb|EFL92359.1| Transcription antiterminator [Candidatus Regiella insecticola LSR1]
          Length = 163

 Score = 76.2 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++           + +    ++  L+        P   +  + +GR+V      FP
Sbjct: 2   KAWYLLYCKR------AQLLR---AQEHLERQGVVCLTPIVAIKKMWRGRRVTLHEPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+  +    +    TIK +  V  F+  G  P  +    I+ I +     +     +V 
Sbjct: 53  NYLFTEFNPENIHTTTIKASRGVSHFVRFGLYPVIIPQMVIDDIKSHTIKTISDSTVAVS 112

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
              G+ V V++G F+    I    D E+ R  + + I        L     EK+V
Sbjct: 113 ---GDTVRVTEGIFSGLQAIYTEPDGER-RSMILLNILNSQVSKSLDNRHFEKVV 163


>gi|290473588|ref|YP_003466458.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           hemolysin [Xenorhabdus bovienii SS-2004]
 gi|289172891|emb|CBJ79662.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           haemolysin [Xenorhabdus bovienii SS-2004]
          Length = 162

 Score = 76.2 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++        +A+  +                  P+ ++  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQISRAIGHLER---------QDVICLTPTAKIEKIVRGKRTTVTEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +          TI  T  V  F+     P+ V  + I+ +M+  E     P + +   
Sbjct: 55  LFVNFDPEIIHTTTINSTRGVNHFIRFSTYPAVVPQTLIDELMSATEQEYIAPETPI--- 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + I  +     L   Q  KI
Sbjct: 112 TGDTVLITEGIFEGIQAIYNEPDGET-RSILLLNILNKEVSKILDNKQFIKI 162


>gi|153808243|ref|ZP_01960911.1| hypothetical protein BACCAC_02531 [Bacteroides caccae ATCC 43185]
 gi|149129146|gb|EDM20362.1| hypothetical protein BACCAC_02531 [Bacteroides caccae ATCC 43185]
          Length = 197

 Score = 76.2 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 12/176 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RLS+ G+D       +P ++ +     R+   +    
Sbjct: 24  SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKLVDTVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V +     +++      T      +     P+ + D ++      ++ + +      
Sbjct: 75  PMMVFVHVTPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMND 134

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                GE+V V  GP +   G +  V   +S++ V + + G    V++    VE I
Sbjct: 135 SPLARGEKVRVIKGPLSGLVGELVTV-GGRSKIAVRLNMLGCAC-VDMPIGYVEPI 188


>gi|218550914|ref|YP_002384705.1| transcriptional activator RfaH [Escherichia fergusonii ATCC 35469]
 gi|218358455|emb|CAQ91102.1| DNA-binding transcriptional antiterminator [Escherichia fergusonii
           ATCC 35469]
 gi|324111070|gb|EGC05057.1| transcriptional activator RfaH [Escherichia fergusonii B253]
 gi|325499185|gb|EGC97044.1| transcriptional activator RfaH [Escherichia fergusonii ECD227]
          Length = 162

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSIYKPEGIVDPGT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  KI
Sbjct: 112 PGDQVIITEGAFEGFQAIFSEPDGE-ARSMLLLNLINKEVKHSVKNTEFRKI 162


>gi|206576966|ref|YP_002241095.1| transcriptional activator RfaH [Klebsiella pneumoniae 342]
 gi|288937740|ref|YP_003441799.1| transcriptional acivator RfaH [Klebsiella variicola At-22]
 gi|290513135|ref|ZP_06552497.1| transcriptional activator RfaH [Klebsiella sp. 1_1_55]
 gi|206566024|gb|ACI07800.1| transcriptional activator RfaH [Klebsiella pneumoniae 342]
 gi|288892449|gb|ADC60767.1| transcriptional acivator RfaH [Klebsiella variicola At-22]
 gi|289774346|gb|EFD82352.1| transcriptional activator RfaH [Klebsiella sp. 1_1_55]
          Length = 162

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +              +P+  +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQSVN---------CLMPTIALEKIIRGKRTMVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I+         TI  T  V  F+  G  P+ V  + I  +       +  P +     
Sbjct: 55  LFIEFDPEVIHTTTISATRGVNNFVRFGALPAVVPSAVIHQLSIYKPEGITDPET---PH 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V ++DG F     I    D E +R  + + +  +     +     +KI
Sbjct: 112 EGDSVLITDGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTDFQKI 162


>gi|254509311|ref|ZP_05121402.1| transcriptional activator RfaH [Vibrio parahaemolyticus 16]
 gi|219547769|gb|EED24803.1| transcriptional activator RfaH [Vibrio parahaemolyticus 16]
          Length = 165

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 12/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY++    +           + ++  L++   E   P  ++  + +G++   +   FP
Sbjct: 2   KQWYLLYCKRS---------EQQRAKMHLENQGVECYYPEIQIEKMVRGKRQVKKEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+  +  +     + TI+ T  V+ F+  G     +   ++   + ++E   +  + + 
Sbjct: 53  SYIFARFDVEQGPTFTTIRSTRGVVDFVRRGA-LPQILQGDLIVTLKEIETEQEGLMQAG 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E G+ V V+ G FA    I +  D E+ R  + V +  +   V +    +
Sbjct: 112 LPEKGDTVNVATGQFAGMEAIYQEPDGER-RSILLVNMLSKQVEVTVDNKDL 162


>gi|189347084|ref|YP_001943613.1| NusG antitermination factor [Chlorobium limicola DSM 245]
 gi|189341231|gb|ACD90634.1| NusG antitermination factor [Chlorobium limicola DSM 245]
          Length = 184

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 5   WYIVQVYSNCEKKAVES-IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           WY V V S  EKK     +   +             +P          RK       F G
Sbjct: 10  WYAVYVRSRYEKKVHRMFLEKEVE----------AFLPLLETWRQWSDRKKKVSEPLFRG 59

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +   M    +  + DT  V+ F+G G+ PS ++  +I+ I   V             
Sbjct: 60  YVFVNIDM-KAEHIKVLDTDGVVKFIGIGKTPSVISSRDIDWIKKLVREPDAVRRIVASL 118

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
             G++V V+ GPF    G+V   +  +SR+ V   
Sbjct: 119 PPGQKVMVTAGPFKGLEGVVVK-EGRESRLVVYFD 152


>gi|71894376|ref|YP_278484.1| transcription antitermination protein [Mycoplasma synoviae 53]
 gi|71851164|gb|AAZ43773.1| transcription antitermination protein [Mycoplasma synoviae 53]
          Length = 202

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 20/193 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT----------EITIPSERVVSVRKGR- 52
           RWY++   +  E   VE++  R+    ++                 +PS     + K + 
Sbjct: 7   RWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTELNKKQK 66

Query: 53  ---KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
                   +  FPGY+ +KA M D V++ I++T +V G +G+G      T      I   
Sbjct: 67  GLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQNQIRKS 126

Query: 110 VEAAVQRPVSSVFFE------VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
           +E   +        +      VG+ V ++DG +     +++ +  E +   +    F + 
Sbjct: 127 LEKEEEAKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNMAEISFEDFNKK 186

Query: 164 TPVELAYNQVEKI 176
              ++  + + +I
Sbjct: 187 VEFKINLDWLTRI 199


>gi|198242878|ref|YP_002217904.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937394|gb|ACH74727.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 162

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++ +     FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +       V  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + +  +     +      KI
Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGET-RSILLLNLLNKEVKQSVKNTGFRKI 162


>gi|209694405|ref|YP_002262333.1| transcriptional activator RfaH [Aliivibrio salmonicida LFI1238]
 gi|208008356|emb|CAQ78511.1| transcriptional activator RfaH [Aliivibrio salmonicida LFI1238]
          Length = 165

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 11/172 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KLWYLLYCKRG---------DQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFP 52

Query: 63  GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++   T    + TI+ T  +  F+  G  P+ +    I  +    E    +     
Sbjct: 53  CYMFVRFDFTVGPTFTTIRSTRGISDFVRFGSQPTVLNGDLIYSLKQLGENLHHKKTIEC 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             E G++V + +GP+   + I K  D E  R  + + +  +   +++    V
Sbjct: 113 LPESGQKVDIIEGPYTGIDAIYKEADGE-MRSILLITLINKKVEIKIENINV 163


>gi|307321395|ref|ZP_07600793.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
 gi|306892940|gb|EFN23728.1| NusG antitermination factor [Sinorhizobium meliloti AK83]
          Length = 221

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W ++Q  +  EK         L ++G++ LV     P       R       ER    
Sbjct: 53  KSWIVLQTMTGREKIV----ENILGQAGVEALVPTKKAPDV---RRRGRIIEGQERPVMR 105

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
           GYV++ AV++    + ++    V+G +G  E P       +  I    + A       V 
Sbjct: 106 GYVMVHAVLSPAALNGLRRVEHVVGIVGGAERPWCADAQSVNMIKALSKKANAADEEKVL 165

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE-LAYNQVEKI 176
            FE+GERV   +GPF    G+V  VD EK    VEV+I G   PV  +    + K+
Sbjct: 166 PFELGERVVFREGPFYLLGGVVIAVDGEKFDARVEVMILGGHVPVHNVPLEILAKV 221


>gi|220926439|ref|YP_002501741.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060]
 gi|219951046|gb|ACL61438.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060]
          Length = 171

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 16/176 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W++V+   +   +A++++                 +P    V  R+GR      + F   
Sbjct: 7   WHLVRTAPSMMGRALDTLKE---------QGIPTVVPRTVAVGHREGRPYLRRAQMFHRT 57

Query: 65  VLI----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           V +     A +  KV      T  +         P  ++  ++   +  +    +R  + 
Sbjct: 58  VFVGVEGAADLDGKVPTARGVTRVLRNPTRADMAPMTISGPDMAAFVAAIGITEKRKPAG 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +    G+RV V  GPFASF  +V+ V     R+ V V IFGR TP E  +  V  I
Sbjct: 118 IAA--GDRVVVQAGPFASFPAMVEEVLP-NERLKVAVQIFGRATPFECGHADVRPI 170


>gi|126734253|ref|ZP_01750000.1| transcriptional antitermination protein, putative [Roseobacter sp.
           CCS2]
 gi|126717119|gb|EBA13983.1| transcriptional antitermination protein, putative [Roseobacter sp.
           CCS2]
          Length = 172

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++Q+  N         G  L+R+ L        +P   V    +       +  FPGY
Sbjct: 10  WFVLQLKPN---------GLSLARTHLARQGFLTLMPLREVSQHARYGLRTVRQPLFPGY 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +          +    +T  V   +   +       ++I   +  +             +
Sbjct: 61  LFFSVTARQINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDGMLGDVADLQ 120

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G++V V +GPFA +   V + D    R+ + V + GR T V +A   +EK
Sbjct: 121 TGDQVGVVNGPFAGWMAKVVSADTP-DRIQLLVDVMGRETAVNIAGRDLEK 170


>gi|16767247|ref|NP_462862.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56415831|ref|YP_152906.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62182445|ref|YP_218862.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161617101|ref|YP_001591065.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553387|ref|ZP_02347136.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993917|ref|ZP_02575010.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233912|ref|ZP_02658970.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238430|ref|ZP_02663488.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244668|ref|ZP_02669600.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263131|ref|ZP_02685104.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467606|ref|ZP_02701443.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822651|ref|ZP_02834651.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194442676|ref|YP_002043206.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451271|ref|YP_002047987.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471723|ref|ZP_03077707.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736748|ref|YP_002116903.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249659|ref|YP_002148903.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261907|ref|ZP_03161981.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364761|ref|YP_002144398.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200389120|ref|ZP_03215732.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930337|ref|ZP_03221314.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205354464|ref|YP_002228265.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859177|ref|YP_002245828.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224585792|ref|YP_002639591.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912981|ref|ZP_04656818.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|6960227|gb|AAF33417.1| 88% identity to E. coli transcriptional activator RFAH) (SW:P26614)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422542|gb|AAL22821.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56130088|gb|AAV79594.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62130078|gb|AAX67781.1| transcriptional activator affecting biosynthesis of
           lipopolysaccharide core, F pilin, and haemolysin
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366465|gb|ABX70233.1| hypothetical protein SPAB_04934 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401339|gb|ACF61561.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194409575|gb|ACF69794.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458087|gb|EDX46926.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712250|gb|ACF91471.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195629956|gb|EDX48616.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197096238|emb|CAR61835.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213362|gb|ACH50759.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240162|gb|EDY22782.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288714|gb|EDY28089.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199606218|gb|EDZ04763.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320741|gb|EDZ05943.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205274245|emb|CAR39264.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322157|gb|EDZ09996.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328150|gb|EDZ14914.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332101|gb|EDZ18865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336504|gb|EDZ23268.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340955|gb|EDZ27719.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348234|gb|EDZ34865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710980|emb|CAR35348.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470320|gb|ACN48150.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261249100|emb|CBG26961.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996261|gb|ACY91146.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160492|emb|CBW20022.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915096|dbj|BAJ39070.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225494|gb|EFX50551.1| Transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613053|gb|EFY10004.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617359|gb|EFY14259.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625649|gb|EFY22471.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627072|gb|EFY23865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631212|gb|EFY27975.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638245|gb|EFY34944.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642819|gb|EFY39406.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646939|gb|EFY43441.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650327|gb|EFY46740.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656383|gb|EFY52677.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657608|gb|EFY53878.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322666019|gb|EFY62200.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666758|gb|EFY62935.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670999|gb|EFY67129.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679294|gb|EFY75346.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681698|gb|EFY77725.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685975|gb|EFY81963.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716939|gb|EFZ08510.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132325|gb|ADX19755.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323192078|gb|EFZ77312.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196467|gb|EFZ81617.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203781|gb|EFZ88802.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205344|gb|EFZ90318.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210713|gb|EFZ95589.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215881|gb|EGA00614.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221374|gb|EGA05792.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227608|gb|EGA11764.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231793|gb|EGA15904.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236208|gb|EGA20285.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239555|gb|EGA23603.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244349|gb|EGA28357.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249554|gb|EGA33466.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250354|gb|EGA34240.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256561|gb|EGA40292.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259741|gb|EGA43374.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265149|gb|EGA48647.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268422|gb|EGA51894.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326629597|gb|EGE35940.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 162

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++ +     FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +       V  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + +  +     +      KI
Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 162


>gi|313676303|ref|YP_004054299.1| nusg antitermination factor [Marivirga tractuosa DSM 4126]
 gi|312943001|gb|ADR22191.1| NusG antitermination factor [Marivirga tractuosa DSM 4126]
          Length = 174

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 14/172 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ +   S  EKK  + +              E+  P++ V+     RK   +   FP Y
Sbjct: 4   WFAIYTKSRTEKKVADRL---------ADQHIEVYCPTQTVMRQWSDRKKKVKVAVFPSY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +K    D     I  TP V+ F+      + +   EIE I N +    +  VS   F+
Sbjct: 55  VFVKFQ-DDNERLRILQTPGVVNFVRHLGADAKIRPKEIEAIQNLLGEYEE--VSVEPFQ 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG++V +  G      G V  + E+K RV V +   G     E++  +V+K+
Sbjct: 112 VGDKVQIQHGGMKGQEGKV--ILEQKDRVIVYIESLGLSLKAEVSKAKVKKV 161


>gi|161505515|ref|YP_001572627.1| transcriptional activator RfaH [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866862|gb|ABX23485.1| hypothetical protein SARI_03680 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 186

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++ +     FP Y
Sbjct: 28  WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 78

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +       V  P +     
Sbjct: 79  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 135

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + +  +     +      KI
Sbjct: 136 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 186


>gi|119469076|ref|ZP_01612060.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7]
 gi|119447328|gb|EAW28596.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7]
          Length = 161

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 15/174 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY+V      E++A  ++         ++   E   P      + K R+   +   
Sbjct: 1   ME-SWYLVICKPRQEERAKANL---------NNQGIEAFYPILTTEKLVKSRRTVKQVAL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +     +  +  +K+T  + GF+  G N   V  + IEH+ N     V+  +  
Sbjct: 51  FPNYLFVCLDSKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNHTSNTVESQLPK 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                G+ V VS+  F + + I K  D +  R  + + +  +   + +    +E
Sbjct: 111 ----QGDAVSVSNHSFKNIDAIYKEPDGD-MRSILLINLLNKQVEMSVDNTDIE 159


>gi|159162766|pdb|1NZ8|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
           N-Terminal (Ngn) Domain From Thermus Thermophilus
          Length = 119

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 6/109 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63
           WY V      E+KA  ++  R+   GL   + ++ IP+E VV +R+ G+K    ++ FPG
Sbjct: 4   WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPG 63

Query: 64  YVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
           Y+ I+  + D+      +  ++ TP + GF+G G  P P++  E+ HI+
Sbjct: 64  YLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHIL 112


>gi|254039053|ref|ZP_04873104.1| transcriptional activator [Escherichia sp. 1_1_43]
 gi|226838744|gb|EEH70772.1| transcriptional activator [Escherichia sp. 1_1_43]
          Length = 162

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVNNTEFRKL 162


>gi|309379174|emb|CBX22305.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 47

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +++GPFA FNG+V  V+ E++++ V V IFGR TPVEL + QVEKI
Sbjct: 1   MNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 46


>gi|157144469|ref|YP_001451788.1| transcriptional activator RfaH [Citrobacter koseri ATCC BAA-895]
 gi|157081674|gb|ABV11352.1| hypothetical protein CKO_00183 [Citrobacter koseri ATCC BAA-895]
          Length = 162

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKMVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       V  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPATVPSNVIHQLSVYKPEGVVDPET---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      K+
Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKEVKQSVKNTAFRKV 162


>gi|262402668|ref|ZP_06079229.1| transcriptional activator RfaH [Vibrio sp. RC586]
 gi|262351450|gb|EEZ00583.1| transcriptional activator RfaH [Vibrio sp. RC586]
          Length = 165

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2   KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVKEPLFP 52

Query: 63  GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++    T   + T++ T  V+ F+  G +P  +    I   + Q++    + VS  
Sbjct: 53  SYMFVRFDFETGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIFQ-LKQLDCQQLKGVSKQ 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             E G+ V V+ G FA    I +  D +  R  + V +  +   + +    
Sbjct: 112 LPEKGQVVRVARGQFAGIEAIYQEPDGDT-RSIMLVKMISQQVSMSIENTD 161


>gi|256424177|ref|YP_003124830.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256039085|gb|ACU62629.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 170

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +      EKK    +  RLS   +        +P  R++     RK   E   FP Y
Sbjct: 8   WYALYTMPRHEKK----LHTRLSELNVTS-----FLPMTRMLRTWHDRKKYVEMPLFPSY 58

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +     +  Y+ + +T   + ++ TG   S +++  I +I    E +    +S+ +F 
Sbjct: 59  IFVYLNNIEHYYNVL-NTNGALYYVKTGNELSRISEQIIHYIRIVSEQSTGIELSADYFP 117

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
            G+ + +S GP A F+  V +      ++ V V +  R 
Sbjct: 118 PGKELLISSGPLAGFSCEVVSYKNS-EKILVRVSLLQRS 155


>gi|320088389|emb|CBY98149.1| Transcription antitermination protein nusG [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 186

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++ +     FP Y
Sbjct: 28  WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 78

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +       V  P +     
Sbjct: 79  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 135

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + +  +     +      KI
Sbjct: 136 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 186


>gi|50119164|ref|YP_048331.1| transcriptional activator RfaH [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609690|emb|CAG73123.1| transcriptional activator [Pectobacterium atrosepticum SCRI1043]
          Length = 162

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   MEA-WYLLYCKRGQLLRAKEHLER---------QEVTCVSPMIALDKIVRGKRTEVCEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    I+ +  +    +  P   
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPMQVIIDP--- 107

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  + G+ V ++DG F+    I    D E +R  + + +  +     +   +  K
Sbjct: 108 LTPQSGDSVVITDGIFSGLQAIYSEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161


>gi|126667149|ref|ZP_01738123.1| transcriptional activator RfaH [Marinobacter sp. ELB17]
 gi|126628305|gb|EAZ98928.1| transcriptional activator RfaH [Marinobacter sp. ELB17]
          Length = 143

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
             L +       P   V  +R G++       F GY+ I     + V+  ++ T  VI  
Sbjct: 1   MHLQNQDIPCFYPKVMVEKLRSGKRSCKLEALFSGYIFINLSQLNPVWSKLRSTRGVIRI 60

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
           +G G  P PV D  I+H+   +     +  S+   + G+ V V++GPFA    I +  D 
Sbjct: 61  VGFGGKPLPVKDEVIDHLRASL----DKVASAGGIKSGDDVDVAEGPFAGMRAIFQCYDG 116

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVE 174
           +  R  V +    +   + +  + ++
Sbjct: 117 D-ERAIVLIEFMQKSQRISVPISSLK 141


>gi|157704379|gb|ABV68878.1| NusG [Candidatus Liberibacter asiaticus]
          Length = 49

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 1   VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 49


>gi|16762157|ref|NP_457774.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143646|ref|NP_806988.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213022004|ref|ZP_03336451.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213162212|ref|ZP_03347922.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417412|ref|ZP_03350554.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427336|ref|ZP_03360086.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213583371|ref|ZP_03365197.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213616391|ref|ZP_03372217.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646466|ref|ZP_03376519.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213854780|ref|ZP_03383020.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289803898|ref|ZP_06534527.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289828717|ref|ZP_06546512.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25512544|pir||AE0915 transcription activator STY3582 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504460|emb|CAD07915.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139281|gb|AAO70848.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 162

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTFVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  S I  +       V  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + +  +     +      KI
Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 162


>gi|146313585|ref|YP_001178659.1| transcriptional activator RfaH [Enterobacter sp. 638]
 gi|145320461|gb|ABP62608.1| transcriptional acivator RfaH [Enterobacter sp. 638]
          Length = 163

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 12/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  +++G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLTPVITLEKIQRGKRTMVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G  P+ V  + I  +   V              
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGAQPATVPSTVIHQL--SVYKQPDDITDPDTPF 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +A     K+
Sbjct: 113 CGDDVVITEGAFEGLQAIFSEPDGE-ARSMLLLNLLNKQVLQSVANTAFRKV 163


>gi|325970070|ref|YP_004246261.1| NusG antitermination factor [Spirochaeta sp. Buddy]
 gi|324025308|gb|ADY12067.1| NusG antitermination factor [Spirochaeta sp. Buddy]
          Length = 182

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 5/174 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             +Y +   +  E+K    +     R   +    +I IP  R++  RKG+K+ S+    P
Sbjct: 1   MNYYFIACRTGGEEKVRAHLNKFFIRERGEMHEVDIFIPMRRMIDRRKGKKIMSDHPILP 60

Query: 63  GYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           GY+L+ +   +TD V    +  P   GFL   +    +   + ++    +        S 
Sbjct: 61  GYLLLSSEEPLTDFVMDIHR-IPGCYGFLHNLDKTIELKGPDHQYAAWIMHNKGTIKPSK 119

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQ 172
           V +  GE + V +GP   F G V +VD   +RV VE       R   + + + Q
Sbjct: 120 VVYTQGEPIKVVEGPLQDFMGTVISVDYRHNRVMVEFQFAEVIRKVSMPVEFIQ 173


>gi|94967916|ref|YP_589964.1| transcription antitermination protein nusG [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549966|gb|ABF39890.1| transcription antitermination protein nusG [Candidatus Koribacter
           versatilis Ellin345]
          Length = 182

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 13/175 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              W+ VQ     EK+  E +            +         V   + G         F
Sbjct: 11  ELHWFAVQTRHRHEKRVAERLR--------QSEIETFLPIHRAVHRWKNGINAEVNLPLF 62

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGY+     +       +   P VI    +  +P+P+ D+EI  +  ++ A   +     
Sbjct: 63  PGYLF--TRLRGSQRIPLLREPGVIAIAASSNSPTPIGDNEIAQL--RLVAESVKAEPHP 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F  +G++V V  GP     GI+     E  RV V V I  R   V+++  ++E +
Sbjct: 119 FLAIGQQVKVVAGPLFGMEGILIRKKSE-YRVVVSVKIIMRSVAVDVSELEIEPV 172


>gi|256424285|ref|YP_003124938.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256039193|gb|ACU62737.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 174

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY++  Y   EKK    +        L  ++    +P +  V     R    E   FP 
Sbjct: 14  KWYVLYTYPLFEKKIGRQLA-------LIDII--HYLPVKTEVRKWSDRLKRMEVPLFPN 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ +K  + +K        P V+ F+        +++ +I  I    ++     + SV+ 
Sbjct: 65  YIFVKTNLLNKTPIL--GIPGVVRFVSVEGRAIAISEDDINKIRQIEQSRQDVEIESVYN 122

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRVTPVELAYNQVEKI 176
             G+++ + +G F+   G    + +  +R+ V + +    +   VE++   +EKI
Sbjct: 123 -TGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKI 173


>gi|261343102|ref|ZP_05970960.1| transcriptional activator RfaH [Enterobacter cancerogenus ATCC
           35316]
 gi|288314668|gb|EFC53606.1| transcriptional activator RfaH [Enterobacter cancerogenus ATCC
           35316]
          Length = 163

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  +++G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGKRALVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +   V    +         
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGASPATVPSTVIHQL--SVYQQPEGITDPETPY 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E +R  + + +  +     +      K+
Sbjct: 113 AGDSVVITEGAFEGLQAIFSEPDGE-ARSMLLLNLLNKQVLQSVKNTDFRKV 163


>gi|259906910|ref|YP_002647266.1| transcriptional activator RfaH [Erwinia pyrifoliae Ep1/96]
 gi|224962532|emb|CAX53987.1| transcriptional activator [Erwinia pyrifoliae Ep1/96]
 gi|283476703|emb|CAY72532.1| Transcriptional activator RfaH [Erwinia pyrifoliae DSM 12163]
 gi|310766158|gb|ADP11108.1| transcriptional activator RfaH [Erwinia sp. Ejp617]
          Length = 166

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 14/164 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G+        
Sbjct: 1   ME-SWYLLYCKRGQLLRAQEHLERQAV---------HCLSPMVALEKIVRGKPTQVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ V    I  +              
Sbjct: 51  FPNYLFVEFDPESIHTTTISATRGVSHFVRFGNQPATVPQGVINALQ---VGPALPLDDG 107

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
              + G+ V +++G F     I    D E +R  + + +  +  
Sbjct: 108 ELPQPGDTVMITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150


>gi|170769857|ref|ZP_02904310.1| transcriptional activator RfaH [Escherichia albertii TW07627]
 gi|170121295|gb|EDS90226.1| transcriptional activator RfaH [Escherichia albertii TW07627]
          Length = 162

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGPSPAIVPSAVIHQLSIYKPEDIVDPST---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|238899141|ref|YP_002924823.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           hemolysin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466901|gb|ACQ68675.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           hemolysin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 162

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++        +A E +  +               P   V    +GR++  E   FP
Sbjct: 2   KSWYLLYCKRGQVFRAQEHLERQKVS---------FLTPLVTVEKCLRGRRIQVEEPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I           IK T  V  F+  G   + V D  +  I  +             
Sbjct: 53  NYLFIHFDPEMIHTTCIKATRGVRDFVRFGNQLAVVPDIVVTQIQQRTFDKSVDFRI--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V ++DGPF     I    D E  R  + + +  +        +Q +K
Sbjct: 110 PTPGDLVSITDGPFVGLQAIYSQPDGE-MRSILLMNLLHQQVSKSFDNHQFQK 161


>gi|256421399|ref|YP_003122052.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256036307|gb|ACU59851.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 185

 Score = 73.9 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 16/164 (9%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M  +   WY V      EKK  +++              E   P  RV      RK   E
Sbjct: 1   MEQKTHTWYAVYTKPRWEKKVADALVR---------KQIETYCPINRVTHQWSDRKKIVE 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
              F  YV ++    +     +++T  ++ F+     P+ + D E+E I   +       
Sbjct: 52  EPLFKSYVFVRI--PEDKKTLVRETSGIVNFVYWLGKPASIPDHEVELIKRFLREYQDVQ 109

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           V     +  + + ++ GP    +G V      K+ V   +   G
Sbjct: 110 VERFPIQEDDLIRITAGPLMHQHGRVVE--AGKNTVKAVLYSMG 151


>gi|270264322|ref|ZP_06192589.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041971|gb|EFA15068.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 162

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  V +G+++      
Sbjct: 1   ME-SWYLLYCKRGQLLRAQEHLVRQEVN---------CLSPIITLEKVVRGKRIAVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    IE +          P + 
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVSHFVRFGSLPTTIPQKVIEELQTHTCETYFDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V + DG F     I    D E +R  + + +  +     +   Q +K+
Sbjct: 110 --PQPGDTVLIVDGMFEGLKAIYTEPDGE-ARSMLLLNLINKQVSQSVDNRQFQKL 162


>gi|149003856|ref|ZP_01828684.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758190|gb|EDK65193.1| transcription antitermination protein NusG [Streptococcus
           pneumoniae SP14-BS69]
          Length = 103

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 71  MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVFFEVGERV 129
           MTD+ +  +++TP V GF+G+  N S  T    + I + + +  Q         E+G+ V
Sbjct: 1   MTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDVEIGQTV 60

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            + DG FA + G +  +D   ++V + + +FG  T  E+  NQ+
Sbjct: 61  RIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 102


>gi|283787486|ref|YP_003367351.1| transcriptional activator [Citrobacter rodentium ICC168]
 gi|282950940|emb|CBG90617.1| transcriptional activator [Citrobacter rodentium ICC168]
          Length = 162

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKMVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPATVPSAVIHQLSVYKPEGIVDPET---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V +++G F     I    D E  R  + + +  +     +      K+
Sbjct: 112 PGDSVIITEGAFEGLQAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKL 162


>gi|238759597|ref|ZP_04620758.1| Transcriptional activator rfaH [Yersinia aldovae ATCC 35236]
 gi|238702140|gb|EEP94696.1| Transcriptional activator rfaH [Yersinia aldovae ATCC 35236]
          Length = 162

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G+++ +    FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQAVN---------CWTPIATIEKIVRGKRIKTTEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         TI  T  V  F+  G  P+ +    I  + +     +  P   V 
Sbjct: 53  NYLFVEFDSEHIHTTTISATRGVSHFVRFGAQPAVIPAIVITDMQSHAADKIIAPEVPV- 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G FA    I    D E +R  + + +        L   Q EK
Sbjct: 112 --TGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIMQSLDNRQFEK 161


>gi|292559253|gb|ADE32254.1| transcription antitermination protein NusG [Streptococcus suis GZ1]
          Length = 172

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++Q YS  E K  E++  R     +   +  + IP++ V   + G     E   FP
Sbjct: 7   KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           GYVL++ VMTD+ +  +++TP V                  +  +       +
Sbjct: 67  GYVLVEMVMTDEAWFVVRNTPNVTVSWVHTVTVQNQLHFWKKKFVKSWCLWDK 119


>gi|238763685|ref|ZP_04624645.1| Transcriptional activator rfaH [Yersinia kristensenii ATCC 33638]
 gi|238698163|gb|EEP90920.1| Transcriptional activator rfaH [Yersinia kristensenii ATCC 33638]
          Length = 162

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G++       FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIARGKRTEMTEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         TI  T  V  F+  G  P+ +    I  + +     +  P     
Sbjct: 53  NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVITEMQSHTADKIIDPGM--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G F+  + I    D E +R  + + +        L   Q EK
Sbjct: 110 PTPGDVVTITEGIFSGLHAIYTEPDGE-ARSMLLLNMLNSQVLQSLDNRQFEK 161


>gi|313672417|ref|YP_004050528.1| nusg antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939173|gb|ADR18365.1| NusG antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 164

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E    + +   L+ +GL+     +  P  +     +  K       FP
Sbjct: 1   MNWYLIYTKVKKE----DFLEQLLTEAGLE-----VLNPKIKKTKNVRNMKKEVIEPLFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +KA +       I+ T  +   +G       V   EI   +            S  
Sbjct: 52  CYIFVKADLN-IHLRIIRYTQGIRRLVGGSN--PTVVPIEIIDTIKSKMVDGFIDTKSEE 108

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           F+ G+ + + DGPF  F GI +   + K RV + +        + +  + +EK+
Sbjct: 109 FKKGDTILIKDGPFKDFIGIFQEELDSKGRVSILLKTLALQPRITVDKDMIEKL 162


>gi|24115136|ref|NP_709646.1| transcriptional activator RfaH [Shigella flexneri 2a str. 301]
 gi|30064863|ref|NP_839034.1| transcriptional activator RfaH [Shigella flexneri 2a str. 2457T]
 gi|110807468|ref|YP_690988.1| transcriptional activator RfaH [Shigella flexneri 5 str. 8401]
 gi|24054408|gb|AAN45353.1| transcriptional activator [Shigella flexneri 2a str. 301]
 gi|30043123|gb|AAP18845.1| transcriptional activator [Shigella flexneri 2a str. 2457T]
 gi|110617016|gb|ABF05683.1| transcriptional activator [Shigella flexneri 5 str. 8401]
 gi|281603235|gb|ADA76219.1| Transcriptional activator rfaH [Shigella flexneri 2002017]
 gi|313647116|gb|EFS11571.1| transcriptional activator RfaH [Shigella flexneri 2a str. 2457T]
          Length = 162

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P       
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---PPY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|329298149|ref|ZP_08255485.1| transcriptional activator RfaH [Plautia stali symbiont]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G++       
Sbjct: 1   ME-SWYLLYCKRGQLLRAKEHLERQEVN---------CLSPMIALEKIVRGKRTTVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P+ V    IE +       +  P + 
Sbjct: 51  FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGAMPATVPYEVIEALQTDAPQILLDPET- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              +VG+ V ++D  F     I    D E  R  + + +  +     +   Q  K+
Sbjct: 110 --PQVGDEVLITDSTFEGLRAIFAEPDGET-RSILRLNLLNKQVMRSVDNKQFRKV 162


>gi|320179812|gb|EFW54759.1| Transcriptional activator RfaH [Shigella boydii ATCC 9905]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++          I  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTIISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|323974428|gb|EGB69556.1| transcriptional activator RfaH [Escherichia coli TW10509]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKNIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|15804432|ref|NP_290472.1| transcriptional activator RfaH [Escherichia coli O157:H7 EDL933]
 gi|15834024|ref|NP_312797.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           Sakai]
 gi|16131688|ref|NP_418284.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|82546193|ref|YP_410140.1| transcriptional activator RfaH [Shigella boydii Sb227]
 gi|82778980|ref|YP_405329.1| transcriptional activator RfaH [Shigella dysenteriae Sd197]
 gi|89110180|ref|AP_003960.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
           K-12 substr. W3110]
 gi|157157494|ref|YP_001465326.1| transcriptional activator RfaH [Escherichia coli E24377A]
 gi|157163316|ref|YP_001460634.1| transcriptional activator RfaH [Escherichia coli HS]
 gi|168750342|ref|ZP_02775364.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753743|ref|ZP_02778750.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763971|ref|ZP_02788978.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768127|ref|ZP_02793134.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775603|ref|ZP_02800610.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780745|ref|ZP_02805752.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786684|ref|ZP_02811691.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC869]
 gi|168801090|ref|ZP_02826097.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC508]
 gi|170022138|ref|YP_001727092.1| transcriptional activator RfaH [Escherichia coli ATCC 8739]
 gi|170083320|ref|YP_001732640.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187730813|ref|YP_001882542.1| transcriptional activator RfaH [Shigella boydii CDC 3083-94]
 gi|188496080|ref|ZP_03003350.1| transcriptional activator RfaH [Escherichia coli 53638]
 gi|191166059|ref|ZP_03027894.1| transcriptional activator RfaH [Escherichia coli B7A]
 gi|193065712|ref|ZP_03046777.1| transcriptional activator RfaH [Escherichia coli E22]
 gi|193067980|ref|ZP_03048945.1| transcriptional activator RfaH [Escherichia coli E110019]
 gi|194429216|ref|ZP_03061744.1| transcriptional activator RfaH [Escherichia coli B171]
 gi|194438631|ref|ZP_03070719.1| transcriptional activator RfaH [Escherichia coli 101-1]
 gi|195938132|ref|ZP_03083514.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806896|ref|ZP_03249233.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814326|ref|ZP_03255655.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821153|ref|ZP_03261473.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396563|ref|YP_002273359.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921319|ref|YP_002295403.1| transcriptional activator RfaH [Escherichia coli SE11]
 gi|217324983|ref|ZP_03441067.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           TW14588]
 gi|218556406|ref|YP_002389320.1| transcriptional activator RfaH [Escherichia coli IAI1]
 gi|218697561|ref|YP_002405228.1| transcriptional activator RfaH [Escherichia coli 55989]
 gi|218701455|ref|YP_002409084.1| transcriptional activator RfaH [Escherichia coli IAI39]
 gi|218707473|ref|YP_002414992.1| transcriptional activator RfaH [Escherichia coli UMN026]
 gi|238902915|ref|YP_002928711.1| DNA-binding transcriptional antiterminator [Escherichia coli
           BW2952]
 gi|253775519|ref|YP_003038350.1| transcriptional activator RfaH [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163799|ref|YP_003046907.1| transcriptional activator RfaH [Escherichia coli B str. REL606]
 gi|254795838|ref|YP_003080675.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           TW14359]
 gi|256021414|ref|ZP_05435279.1| transcriptional activator RfaH [Shigella sp. D9]
 gi|256026187|ref|ZP_05440052.1| transcriptional activator RfaH [Escherichia sp. 4_1_40B]
 gi|260846384|ref|YP_003224162.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O103:H2 str. 12009]
 gi|260857754|ref|YP_003231645.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O26:H11 str. 11368]
 gi|260870564|ref|YP_003236966.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O111:H- str. 11128]
 gi|261225616|ref|ZP_05939897.1| DNA-binding transcriptional antiterminator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255662|ref|ZP_05948195.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285257|ref|YP_003502075.1| transcriptional activator RfaH [Escherichia coli O55:H7 str.
           CB9615]
 gi|293407466|ref|ZP_06651386.1| rfaH [Escherichia coli FVEC1412]
 gi|293417307|ref|ZP_06659932.1| transcriptional activator RfaH [Escherichia coli B185]
 gi|293468158|ref|ZP_06664570.1| transcriptional activator RfaH [Escherichia coli B088]
 gi|297516232|ref|ZP_06934618.1| transcriptional activator RfaH [Escherichia coli OP50]
 gi|298383208|ref|ZP_06992802.1| transcriptional activator rfaH [Escherichia coli FVEC1302]
 gi|300818686|ref|ZP_07098893.1| transcriptional activator RfaH [Escherichia coli MS 107-1]
 gi|300823380|ref|ZP_07103511.1| transcriptional activator RfaH [Escherichia coli MS 119-7]
 gi|300900604|ref|ZP_07118766.1| transcriptional activator RfaH [Escherichia coli MS 198-1]
 gi|300904096|ref|ZP_07121975.1| transcriptional activator RfaH [Escherichia coli MS 84-1]
 gi|300919846|ref|ZP_07136316.1| transcriptional activator RfaH [Escherichia coli MS 115-1]
 gi|300923346|ref|ZP_07139392.1| transcriptional activator RfaH [Escherichia coli MS 182-1]
 gi|300929975|ref|ZP_07145409.1| transcriptional activator RfaH [Escherichia coli MS 187-1]
 gi|300950394|ref|ZP_07164318.1| transcriptional activator RfaH [Escherichia coli MS 116-1]
 gi|300955152|ref|ZP_07167551.1| transcriptional activator RfaH [Escherichia coli MS 175-1]
 gi|301025679|ref|ZP_07189196.1| transcriptional activator RfaH [Escherichia coli MS 69-1]
 gi|301029060|ref|ZP_07192211.1| transcriptional activator RfaH [Escherichia coli MS 196-1]
 gi|301303737|ref|ZP_07209858.1| transcriptional activator RfaH [Escherichia coli MS 124-1]
 gi|301328390|ref|ZP_07221479.1| transcriptional activator RfaH [Escherichia coli MS 78-1]
 gi|301646091|ref|ZP_07245993.1| transcriptional activator RfaH [Escherichia coli MS 146-1]
 gi|307140539|ref|ZP_07499895.1| transcriptional activator RfaH [Escherichia coli H736]
 gi|307313585|ref|ZP_07593205.1| NusG antitermination factor [Escherichia coli W]
 gi|309796212|ref|ZP_07690622.1| transcriptional activator RfaH [Escherichia coli MS 145-7]
 gi|312971870|ref|ZP_07786044.1| transcriptional activator RfaH [Escherichia coli 1827-70]
 gi|331644573|ref|ZP_08345693.1| transcriptional activator RfaH [Escherichia coli H736]
 gi|331655526|ref|ZP_08356519.1| transcriptional activator RfaH [Escherichia coli M718]
 gi|331665492|ref|ZP_08366391.1| transcriptional activator RfaH [Escherichia coli TA143]
 gi|331670687|ref|ZP_08371524.1| transcriptional activator RfaH [Escherichia coli TA271]
 gi|331675305|ref|ZP_08376056.1| transcriptional activator RfaH [Escherichia coli TA280]
 gi|331679952|ref|ZP_08380615.1| transcriptional activator RfaH [Escherichia coli H591]
 gi|331685581|ref|ZP_08386165.1| transcriptional activator RfaH [Escherichia coli H299]
 gi|84027859|sp|P0AFW1|RFAH_ECO57 RecName: Full=Transcriptional activator rfaH
 gi|84027860|sp|P0AFW0|RFAH_ECOLI RecName: Full=Transcriptional activator rfaH
 gi|146386655|pdb|2OUG|A Chain A, Crystal Structure Of The Rfah Transcription Factor At 2.1a
           Resolution
 gi|146386656|pdb|2OUG|B Chain B, Crystal Structure Of The Rfah Transcription Factor At 2.1a
           Resolution
 gi|146386657|pdb|2OUG|C Chain C, Crystal Structure Of The Rfah Transcription Factor At 2.1a
           Resolution
 gi|146386658|pdb|2OUG|D Chain D, Crystal Structure Of The Rfah Transcription Factor At 2.1a
           Resolution
 gi|12518720|gb|AAG59036.1|AE005615_4 transcriptional activator affecting biosynthesis of
           lipopolysaccharide core, F pilin, and haemolysin
           [Escherichia coli O157:H7 str. EDL933]
 gi|41729|emb|CAA46147.1| transcriptional activator of haemolysin synthesis and secretion
           [Escherichia coli]
 gi|148241|gb|AAA67638.1| also called sfrB, hlyT [Escherichia coli str. K-12 substr. MG1655]
 gi|1209302|gb|AAA91060.1| RfaH [Escherichia coli]
 gi|1790276|gb|AAC76845.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13364246|dbj|BAB38193.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           Sakai]
 gi|81243128|gb|ABB63838.1| transcriptional activator affecting biosynthesis of
           lipopolysaccharide core, F pilin, and haemolysin
           [Shigella dysenteriae Sd197]
 gi|81247604|gb|ABB68312.1| RfaH [Shigella boydii Sb227]
 gi|85676211|dbj|BAE77461.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
           K12 substr. W3110]
 gi|157068996|gb|ABV08251.1| transcriptional activator RfaH [Escherichia coli HS]
 gi|157079524|gb|ABV19232.1| transcriptional activator RfaH [Escherichia coli E24377A]
 gi|169757066|gb|ACA79765.1| transcriptional acivator RfaH [Escherichia coli ATCC 8739]
 gi|169891155|gb|ACB04862.1| DNA-binding transcriptional antiterminator [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187427805|gb|ACD07079.1| transcriptional activator RfaH [Shigella boydii CDC 3083-94]
 gi|187768834|gb|EDU32678.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015407|gb|EDU53529.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4113]
 gi|188491279|gb|EDU66382.1| transcriptional activator RfaH [Escherichia coli 53638]
 gi|189001465|gb|EDU70451.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358848|gb|EDU77267.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362555|gb|EDU80974.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365970|gb|EDU84386.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373233|gb|EDU91649.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC869]
 gi|189376688|gb|EDU95104.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC508]
 gi|190903835|gb|EDV63549.1| transcriptional activator RfaH [Escherichia coli B7A]
 gi|192926679|gb|EDV81308.1| transcriptional activator RfaH [Escherichia coli E22]
 gi|192958600|gb|EDV89038.1| transcriptional activator RfaH [Escherichia coli E110019]
 gi|194412728|gb|EDX29022.1| transcriptional activator RfaH [Escherichia coli B171]
 gi|194422435|gb|EDX38434.1| transcriptional activator RfaH [Escherichia coli 101-1]
 gi|208726697|gb|EDZ76298.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735603|gb|EDZ84290.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741276|gb|EDZ88958.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157963|gb|ACI35396.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC4115]
 gi|209752998|gb|ACI74806.1| putative oxidoreductase [Escherichia coli]
 gi|209753000|gb|ACI74807.1| putative oxidoreductase [Escherichia coli]
 gi|209753002|gb|ACI74808.1| putative oxidoreductase [Escherichia coli]
 gi|209753004|gb|ACI74809.1| putative oxidoreductase [Escherichia coli]
 gi|209753006|gb|ACI74810.1| putative oxidoreductase [Escherichia coli]
 gi|209914578|dbj|BAG79652.1| transcriptional activator [Escherichia coli SE11]
 gi|217321204|gb|EEC29628.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354293|emb|CAV00992.1| DNA-binding transcriptional antiterminator [Escherichia coli 55989]
 gi|218363175|emb|CAR00816.1| DNA-binding transcriptional antiterminator [Escherichia coli IAI1]
 gi|218371441|emb|CAR19274.1| DNA-binding transcriptional antiterminator [Escherichia coli IAI39]
 gi|218434570|emb|CAR15499.1| DNA-binding transcriptional antiterminator [Escherichia coli
           UMN026]
 gi|238860913|gb|ACR62911.1| DNA-binding transcriptional antiterminator [Escherichia coli
           BW2952]
 gi|242379385|emb|CAQ34199.1| RfaH transcriptional antiterminator [Escherichia coli BL21(DE3)]
 gi|253326563|gb|ACT31165.1| transcriptional acivator RfaH [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975700|gb|ACT41371.1| transcriptional activator RfaH [Escherichia coli B str. REL606]
 gi|253979856|gb|ACT45526.1| transcriptional activator RfaH [Escherichia coli BL21(DE3)]
 gi|254595238|gb|ACT74599.1| DNA-binding transcriptional antiterminator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257756403|dbj|BAI27905.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O26:H11 str. 11368]
 gi|257761531|dbj|BAI33028.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O103:H2 str. 12009]
 gi|257766920|dbj|BAI38415.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O111:H- str. 11128]
 gi|260451317|gb|ACX41739.1| transcriptional acivator RfaH [Escherichia coli DH1]
 gi|290765130|gb|ADD59091.1| transcriptional activator RfaH [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321536|gb|EFE60974.1| transcriptional activator RfaH [Escherichia coli B088]
 gi|291425577|gb|EFE98615.1| rfaH [Escherichia coli FVEC1412]
 gi|291431075|gb|EFF04070.1| transcriptional activator RfaH [Escherichia coli B185]
 gi|298276444|gb|EFI17963.1| transcriptional activator rfaH [Escherichia coli FVEC1302]
 gi|299877982|gb|EFI86193.1| transcriptional activator RfaH [Escherichia coli MS 196-1]
 gi|300317923|gb|EFJ67707.1| transcriptional activator RfaH [Escherichia coli MS 175-1]
 gi|300355904|gb|EFJ71774.1| transcriptional activator RfaH [Escherichia coli MS 198-1]
 gi|300395881|gb|EFJ79419.1| transcriptional activator RfaH [Escherichia coli MS 69-1]
 gi|300403932|gb|EFJ87470.1| transcriptional activator RfaH [Escherichia coli MS 84-1]
 gi|300413105|gb|EFJ96415.1| transcriptional activator RfaH [Escherichia coli MS 115-1]
 gi|300420374|gb|EFK03685.1| transcriptional activator RfaH [Escherichia coli MS 182-1]
 gi|300450270|gb|EFK13890.1| transcriptional activator RfaH [Escherichia coli MS 116-1]
 gi|300462113|gb|EFK25606.1| transcriptional activator RfaH [Escherichia coli MS 187-1]
 gi|300524166|gb|EFK45235.1| transcriptional activator RfaH [Escherichia coli MS 119-7]
 gi|300528652|gb|EFK49714.1| transcriptional activator RfaH [Escherichia coli MS 107-1]
 gi|300841037|gb|EFK68797.1| transcriptional activator RfaH [Escherichia coli MS 124-1]
 gi|300845189|gb|EFK72949.1| transcriptional activator RfaH [Escherichia coli MS 78-1]
 gi|301075670|gb|EFK90476.1| transcriptional activator RfaH [Escherichia coli MS 146-1]
 gi|306906566|gb|EFN37078.1| NusG antitermination factor [Escherichia coli W]
 gi|308120094|gb|EFO57356.1| transcriptional activator RfaH [Escherichia coli MS 145-7]
 gi|309704273|emb|CBJ03622.1| transcriptional activator [Escherichia coli ETEC H10407]
 gi|310334247|gb|EFQ00452.1| transcriptional activator RfaH [Escherichia coli 1827-70]
 gi|315063132|gb|ADT77459.1| DNA-binding transcriptional antiterminator [Escherichia coli W]
 gi|315138416|dbj|BAJ45575.1| transcriptional activator RfaH [Escherichia coli DH1]
 gi|315254206|gb|EFU34174.1| transcriptional activator RfaH [Escherichia coli MS 85-1]
 gi|315618714|gb|EFU99299.1| transcriptional activator RfaH [Escherichia coli 3431]
 gi|320186230|gb|EFW60969.1| Transcriptional activator RfaH [Shigella flexneri CDC 796-83]
 gi|320191065|gb|EFW65715.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198453|gb|EFW73054.1| Transcriptional activator RfaH [Escherichia coli EC4100B]
 gi|320644710|gb|EFX13760.1| transcriptional activator RfaH [Escherichia coli O157:H- str.
           493-89]
 gi|320650035|gb|EFX18538.1| transcriptional activator RfaH [Escherichia coli O157:H- str. H
           2687]
 gi|320655382|gb|EFX23324.1| transcriptional activator RfaH [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661007|gb|EFX28450.1| transcriptional activator RfaH [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666131|gb|EFX33145.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323155249|gb|EFZ41433.1| transcriptional activator RfaH [Escherichia coli EPECa14]
 gi|323161095|gb|EFZ47013.1| transcriptional activator RfaH [Escherichia coli E128010]
 gi|323173460|gb|EFZ59089.1| transcriptional activator RfaH [Escherichia coli LT-68]
 gi|323177853|gb|EFZ63437.1| transcriptional activator RfaH [Escherichia coli 1180]
 gi|323182612|gb|EFZ68016.1| transcriptional activator RfaH [Escherichia coli 1357]
 gi|323380804|gb|ADX53072.1| transcriptional acivator RfaH [Escherichia coli KO11]
 gi|323934143|gb|EGB30578.1| transcriptional activator RfaH [Escherichia coli E1520]
 gi|323938976|gb|EGB35195.1| transcriptional activator RfaH [Escherichia coli E482]
 gi|323943842|gb|EGB39936.1| transcriptional activator RfaH [Escherichia coli H120]
 gi|323959111|gb|EGB54780.1| transcriptional activator RfaH [Escherichia coli H489]
 gi|323964092|gb|EGB59582.1| transcriptional activator RfaH [Escherichia coli M863]
 gi|323969303|gb|EGB64602.1| transcriptional activator RfaH [Escherichia coli TA007]
 gi|324016241|gb|EGB85460.1| transcriptional activator RfaH [Escherichia coli MS 117-3]
 gi|324115697|gb|EGC09632.1| transcriptional activator RfaH [Escherichia coli E1167]
 gi|326344298|gb|EGD68058.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. 1125]
 gi|326347874|gb|EGD71588.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. 1044]
 gi|327250701|gb|EGE62407.1| transcriptional activator RfaH [Escherichia coli STEC_7v]
 gi|331036245|gb|EGI08480.1| transcriptional activator RfaH [Escherichia coli H736]
 gi|331046847|gb|EGI18931.1| transcriptional activator RfaH [Escherichia coli M718]
 gi|331057390|gb|EGI29379.1| transcriptional activator RfaH [Escherichia coli TA143]
 gi|331062160|gb|EGI34082.1| transcriptional activator RfaH [Escherichia coli TA271]
 gi|331067591|gb|EGI38995.1| transcriptional activator RfaH [Escherichia coli TA280]
 gi|331072499|gb|EGI43831.1| transcriptional activator RfaH [Escherichia coli H591]
 gi|331077282|gb|EGI48496.1| transcriptional activator RfaH [Escherichia coli H299]
 gi|332088527|gb|EGI93643.1| transcriptional activator RfaH [Shigella boydii 3594-74]
 gi|332105002|gb|EGJ08348.1| transcriptional activator RfaH [Shigella sp. D9]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|293413282|ref|ZP_06655944.1| transcriptional activator RfaH [Escherichia coli B354]
 gi|284923948|emb|CBG37047.1| transcriptional activator [Escherichia coli 042]
 gi|291468230|gb|EFF10727.1| transcriptional activator RfaH [Escherichia coli B354]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKMVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|26250608|ref|NP_756648.1| transcriptional activator RfaH [Escherichia coli CFT073]
 gi|91213389|ref|YP_543375.1| transcriptional activator RfaH [Escherichia coli UTI89]
 gi|110644186|ref|YP_671916.1| transcriptional activator RfaH [Escherichia coli 536]
 gi|117626120|ref|YP_859443.1| transcriptional activator RfaH [Escherichia coli APEC O1]
 gi|191173932|ref|ZP_03035451.1| transcriptional activator RfaH [Escherichia coli F11]
 gi|215489181|ref|YP_002331612.1| transcriptional activator RfaH [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560923|ref|YP_002393836.1| transcriptional activator RfaH [Escherichia coli S88]
 gi|218692134|ref|YP_002400346.1| transcriptional activator RfaH [Escherichia coli ED1a]
 gi|237702875|ref|ZP_04533356.1| transcriptional activator RfaH [Escherichia sp. 3_2_53FAA]
 gi|300939921|ref|ZP_07154551.1| transcriptional activator RfaH [Escherichia coli MS 21-1]
 gi|300979538|ref|ZP_07174603.1| transcriptional activator RfaH [Escherichia coli MS 200-1]
 gi|300985617|ref|ZP_07177504.1| transcriptional activator RfaH [Escherichia coli MS 45-1]
 gi|301047251|ref|ZP_07194338.1| transcriptional activator RfaH [Escherichia coli MS 185-1]
 gi|306815099|ref|ZP_07449252.1| transcriptional activator RfaH [Escherichia coli NC101]
 gi|331649687|ref|ZP_08350769.1| transcriptional activator RfaH [Escherichia coli M605]
 gi|331660205|ref|ZP_08361141.1| transcriptional activator RfaH [Escherichia coli TA206]
 gi|9965392|gb|AAG10071.1|AF294318_1 transcriptional activator RfaH [Escherichia coli]
 gi|26111039|gb|AAN83222.1|AE016770_22 Transcriptional activator rfaH [Escherichia coli CFT073]
 gi|91074963|gb|ABE09844.1| transcriptional activator RfaH [Escherichia coli UTI89]
 gi|110345778|gb|ABG72015.1| transcriptional activator RfaH [Escherichia coli 536]
 gi|115515244|gb|ABJ03319.1| transcriptional activator RfaH [Escherichia coli APEC O1]
 gi|190905799|gb|EDV65419.1| transcriptional activator RfaH [Escherichia coli F11]
 gi|215267253|emb|CAS11702.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218367692|emb|CAR05481.1| DNA-binding transcriptional antiterminator [Escherichia coli S88]
 gi|218429698|emb|CAR10658.2| DNA-binding transcriptional antiterminator [Escherichia coli ED1a]
 gi|222035560|emb|CAP78305.1| Transcriptional activator rfaH [Escherichia coli LF82]
 gi|226903046|gb|EEH89305.1| transcriptional activator RfaH [Escherichia sp. 3_2_53FAA]
 gi|281180909|dbj|BAI57239.1| transcriptional activator [Escherichia coli SE15]
 gi|294492287|gb|ADE91043.1| transcriptional activator RfaH [Escherichia coli IHE3034]
 gi|300300841|gb|EFJ57226.1| transcriptional activator RfaH [Escherichia coli MS 185-1]
 gi|300307979|gb|EFJ62499.1| transcriptional activator RfaH [Escherichia coli MS 200-1]
 gi|300408001|gb|EFJ91539.1| transcriptional activator RfaH [Escherichia coli MS 45-1]
 gi|300455231|gb|EFK18724.1| transcriptional activator RfaH [Escherichia coli MS 21-1]
 gi|305851468|gb|EFM51922.1| transcriptional activator RfaH [Escherichia coli NC101]
 gi|307628923|gb|ADN73227.1| transcriptional activator RfaH [Escherichia coli UM146]
 gi|312948416|gb|ADR29243.1| transcriptional activator RfaH [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315284781|gb|EFU44226.1| transcriptional activator RfaH [Escherichia coli MS 110-3]
 gi|315293213|gb|EFU52565.1| transcriptional activator RfaH [Escherichia coli MS 153-1]
 gi|315300809|gb|EFU60034.1| transcriptional activator RfaH [Escherichia coli MS 16-3]
 gi|320197665|gb|EFW72277.1| Transcriptional activator RfaH [Escherichia coli WV_060327]
 gi|323189730|gb|EFZ75009.1| transcriptional activator RfaH [Escherichia coli RN587/1]
 gi|323949255|gb|EGB45145.1| transcriptional activator RfaH [Escherichia coli H252]
 gi|323954070|gb|EGB49868.1| transcriptional activator RfaH [Escherichia coli H263]
 gi|324007531|gb|EGB76750.1| transcriptional activator RfaH [Escherichia coli MS 57-2]
 gi|324014652|gb|EGB83871.1| transcriptional activator RfaH [Escherichia coli MS 60-1]
 gi|330908164|gb|EGH36683.1| transcriptional activator RfaH [Escherichia coli AA86]
 gi|331041557|gb|EGI13705.1| transcriptional activator RfaH [Escherichia coli M605]
 gi|331052773|gb|EGI24808.1| transcriptional activator RfaH [Escherichia coli TA206]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPST---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|170682425|ref|YP_001746174.1| transcriptional activator RfaH [Escherichia coli SMS-3-5]
 gi|170520143|gb|ACB18321.1| transcriptional activator RfaH [Escherichia coli SMS-3-5]
          Length = 162

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMISLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|194434034|ref|ZP_03066304.1| transcriptional activator RfaH [Shigella dysenteriae 1012]
 gi|194417692|gb|EDX33791.1| transcriptional activator RfaH [Shigella dysenteriae 1012]
 gi|332084383|gb|EGI89581.1| transcriptional activator RfaH [Shigella boydii 5216-82]
          Length = 162

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|163752772|ref|ZP_02159896.1| NusG antitermination factor [Kordia algicida OT-1]
 gi|161326504|gb|EDP97829.1| NusG antitermination factor [Kordia algicida OT-1]
          Length = 170

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 13/175 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++ V S  EKK           + L+++  +  +P  + V     RK       FP Y
Sbjct: 7   WHVLYVKSRWEKKV---------HNSLENISIKSFLPKTKTVQQWSDRKKTILTPLFPSY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122
           V +    +   +H          ++  G+  + VT+ EI  I   V+     +  ++  F
Sbjct: 58  VFVYIE-SPLDFHKALSVDGACCYIRFGKEYARVTEKEINQIKLLVDSKEIEEIELNPTF 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            ++GE   +  GP +  +  +    E  +++ V +    +     +  N  +K V
Sbjct: 117 PKIGEMKKIEQGPLSGLDCEIIEA-ENYNKIIVRISSLRQNILATIPLNSFKKAV 170


>gi|74314353|ref|YP_312772.1| transcriptional activator RfaH [Shigella sonnei Ss046]
 gi|73857830|gb|AAZ90537.1| transcriptional activator affecting biosynthesis of
           lipopolysaccharide core, F pilin, and haemolysin
           [Shigella sonnei Ss046]
          Length = 162

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G + + V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASLAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|313203456|ref|YP_004042113.1| ngn domaiN-containing protein [Paludibacter propionicigenes WB4]
 gi|312442772|gb|ADQ79128.1| NGN domain-containing protein [Paludibacter propionicigenes WB4]
          Length = 176

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK                +  E  +  ++V      R          GY
Sbjct: 16  WYAVYTAPRAEKKV---------SERFSDVGIEHYLALQKVKRRWSDRIKEVLIPVVNGY 66

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFF 123
           + +     DK +  +      I F+  G  P  + D +IE++   VE A +    S   F
Sbjct: 67  IFVHIQ--DKDFEKVTKIYGAIAFVREGGRPVAIPDCQIENLRLMVEGADEPIEFSVEDF 124

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV-TPVELAYNQVEKIV 177
             GE V ++ GP     G +  V   K +V + +  FG   T V +++  +EK++
Sbjct: 125 ARGESVTITKGPLTGMMGELVEVKG-KHKVLIRLERFGSAITTVPVSF--IEKVL 176


>gi|261346527|ref|ZP_05974171.1| transcriptional activator RfaH [Providencia rustigianii DSM 4541]
 gi|282565231|gb|EFB70766.1| transcriptional activator RfaH [Providencia rustigianii DSM 4541]
          Length = 164

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A+E          L         P   +  V +G++V      
Sbjct: 1   MEK-WYLLYCKRGQLDRAIE---------HLTRQYVTCMTPMTEMEKVVRGKRVIVTEAL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +K         T++ T  V  F+  G+ P  V +  +E +        + P   
Sbjct: 51  FPNYLFVKFDHEKIHTTTVQSTRGVSHFIRFGKLPVEVPEEIMELLQQAPIGHSKAPDL- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                G+ V ++DG FA    I    D E SR  + + I        +   Q +K+
Sbjct: 110 --PAHGDSVIITDGIFAGVKAIFDEPDGE-SRSILLLNILNTNVVKVIDNTQFKKL 162


>gi|238793505|ref|ZP_04637129.1| Transcriptional activator rfaH [Yersinia intermedia ATCC 29909]
 gi|238727095|gb|EEQ18625.1| Transcriptional activator rfaH [Yersinia intermedia ATCC 29909]
          Length = 162

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G+++ +    FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQTVN---------CWTPIVTIEKIVRGKRIEASEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         TI  T  V  F+  G  P+ +    I  + +     +  P   V 
Sbjct: 53  NYLFVEFDPEYIHTTTISATRGVSHFVRFGAQPAVIPAIVIAEMQSHTMDKIIAPEVPV- 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V + +G FA    I    D E +R  + + +        L   Q EK
Sbjct: 112 --PGDIVTIIEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVMQSLDNRQFEK 161


>gi|307308731|ref|ZP_07588427.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
 gi|306900737|gb|EFN31348.1| NusG antitermination factor [Sinorhizobium meliloti BL225C]
          Length = 215

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY + V    E     S+              E  +P ERVV VR GR   S+  +F
Sbjct: 47  SARWYCLLVKKGREFDVENSLREA---------NVEAFMPRERVVRVRHGRIFESDVPYF 97

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+L++ V + + +H ++    VI  +G       V D E   +  ++    + P  + 
Sbjct: 98  PSYMLVRCVPSPEAFHGLRRHRNVIDIVGGASGYHIVRD-ENVAMFKRICEDAEAPRVAT 156

Query: 122 F--FEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVVIFGRV 163
              F+ G+R  +  GPFA F  IV  V    +++  V + + GR 
Sbjct: 157 DKTFKEGDRADIVLGPFAGFMCIVTAVKWCRQAKASVRIDVHGRP 201


>gi|318607561|emb|CBY29059.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 162

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G+++ +    FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQKVN---------CWTPIVTIEKIMRGKRIETTEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         TI  T  V  F+  G  P+ +    I  + +     +  P     
Sbjct: 53  NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVISEMQSYTTDKIIAPEI--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G FA    I    D E +R  + + +        L   Q EK
Sbjct: 110 PTPGDTVIITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161


>gi|257458183|ref|ZP_05623337.1| transcription antitermination protein NusG [Treponema vincentii
           ATCC 35580]
 gi|257444477|gb|EEV19566.1| transcription antitermination protein NusG [Treponema vincentii
           ATCC 35580]
          Length = 55

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            FE G++V + +GPF +F G V+ V  E++++ V V IFGR TPVE+   QVE I
Sbjct: 1   MFEPGQQVKIIEGPFDTFTGTVEEVMAERNKLRVMVAIFGRTTPVEVDMLQVELI 55


>gi|320176774|gb|EFW51808.1| Transcriptional activator RfaH [Shigella dysenteriae CDC 74-1112]
          Length = 162

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  +  G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVCGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162


>gi|332159889|ref|YP_004296466.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664119|gb|ADZ40763.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859156|emb|CBX69508.1| transcriptional activator rfaH [Yersinia enterocolitica W22703]
          Length = 162

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G+++ +    FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIMRGKRIETTEVLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         TI  T  V  F+  G  P+ +    I  + +     +  P     
Sbjct: 53  NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVISEMQSYTTDKIIAPEI--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G FA    I    D E +R  + + +        L   Q EK
Sbjct: 110 PMPGDTVIITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161


>gi|261823464|ref|YP_003261570.1| transcriptional activator RfaH [Pectobacterium wasabiae WPP163]
 gi|261607477|gb|ACX89963.1| transcriptional acivator RfaH [Pectobacterium wasabiae WPP163]
          Length = 162

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +                  P   +  + +G++       
Sbjct: 1   MEA-WYLLYCKRGQLLRAKEHLER---------QDVTCVSPMITLDKIVRGKRTEVCEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ +    I+ +  +    +  P   
Sbjct: 51  FPNYLFVEFDPERIHTTTISATRGVNSFVRFGALPATIPQQVIDELSLRPIQKIIDP--- 107

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  + G+ V ++DG F+    I    D E +R  + + +  +     +   +  K
Sbjct: 108 LTPQPGDNVVITDGVFSGLQAIYTEPDGE-ARSMLLLCMLNKQVKHSIDNREFRK 161


>gi|123440656|ref|YP_001004649.1| transcriptional activator RfaH [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087617|emb|CAL10398.1| putative regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 162

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +  +               P   +  + +G+++ +    FP
Sbjct: 2   KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIMRGKRIETTEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++         TI  T  V  F+  G  P+ +  + I  + +     +  P     
Sbjct: 53  NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPATVISEMQSHTTDKIIAPEI--- 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V + +G FA    I    D E +R  + + +        L   Q EK
Sbjct: 110 PTPGDTVIIKEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161


>gi|148980746|ref|ZP_01816202.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3]
 gi|145961096|gb|EDK26415.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3]
          Length = 168

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++      +K+A + +          +   E   P   V  V +G++   +   FP
Sbjct: 2   KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIEVEKVVRGKEKVVKEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSS 120
            YV ++        + T++ T  V+ F+  G  P  V    +  +    +  +       
Sbjct: 53  SYVFVRFDYEQGPSFTTVRSTRGVVDFIKFGAQPHEVQGDLVFELKELEMHCSNDVEDCC 112

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           V FE G+ V ++ G FA    I    D E +R  + V +  +V P+ +    ++
Sbjct: 113 VEFESGQVVKINSGQFAGIEAIFHQKDGE-ARSIMLVKMISQVVPISIENEALQ 165


>gi|149199619|ref|ZP_01876652.1| putative transcriptional activator [Lentisphaera araneosa HTCC2155]
 gi|149137272|gb|EDM25692.1| putative transcriptional activator [Lentisphaera araneosa HTCC2155]
          Length = 169

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 12/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +      E    +S                   P   V  VR+G+        FP Y
Sbjct: 6   WYCLYTKPRQENLTAQSAL---------DAGFPTFNPKIEVRKVRRGKATYVHAALFPSY 56

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAAVQRPVSSVFF 123
           V I+A   +      +    V   +G G +   +   + I   ++               
Sbjct: 57  VFIQA--NEGNLDKARYLRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDMHEL 114

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           + G++V V DGP      I K   ++  R  V   +F      ++    + K
Sbjct: 115 KDGDKVQVLDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIEDLIK 166


>gi|320639325|gb|EFX08947.1| transcriptional activator RfaH [Escherichia coli O157:H7 str.
           G5101]
          Length = 162

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTKFRKL 162


>gi|237727428|ref|ZP_04557909.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434284|gb|EEO44361.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 170

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   ER   P
Sbjct: 2   KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 53  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
               GE + V  GP     G +  VD  K++V V + + G    V++    VEKI+
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKII 166


>gi|212710331|ref|ZP_03318459.1| hypothetical protein PROVALCAL_01390 [Providencia alcalifaciens DSM
           30120]
 gi|212687138|gb|EEB46666.1| hypothetical protein PROVALCAL_01390 [Providencia alcalifaciens DSM
           30120]
          Length = 164

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++       ++AVE          L         P   +  V +G++       
Sbjct: 1   MEK-WYLLYCKRGQLERAVE---------HLTRQDVACMTPMTEMEKVVRGKRTVVTEAL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +K         TI+ T  V  F+  G  P+ V +  IE I     +  Q P   
Sbjct: 51  FPNYLFVKFDHEQIHTTTIQSTRGVSHFIRFGVLPAEVPEEIIELIQQTPISHTQSPDL- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE--LAYNQVEK 175
                G+ V +++G FA  N I    + E SR  + + I    T VE  +   Q +K
Sbjct: 110 --PSHGDNVVITEGIFAGVNAIFNEPNGE-SRSILLLNILN--TTVEKVIDNTQFKK 161


>gi|227888546|ref|ZP_04006351.1| transcriptional activator RfaH [Escherichia coli 83972]
 gi|227834385|gb|EEJ44851.1| transcriptional activator RfaH [Escherichia coli 83972]
 gi|307555988|gb|ADN48763.1| transcriptional activator RfaH [Escherichia coli ABU 83972]
          Length = 162

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPST---PY 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G++V +++G F  F  I    D E +R  + + +  +     +   +  K+
Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTESRKL 162


>gi|256422413|ref|YP_003123066.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256037321|gb|ACU60865.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 174

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 1   MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M+     WY++      E +  +          +     +I +P   V      R    E
Sbjct: 1   MSKFNVGWYLLYTRPRQEARVAK---------EMADKNIQIYLPYTTVTRRWTDRIKVLE 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
              FP YV +      + Y+   +      ++  G   + V+D+ ++ +    +A     
Sbjct: 52  VPLFPSYVFVHLTNMHEFYYGS-NLESACSYVRFGNEVARVSDAAVDAVRTIAKAGNNLE 110

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           VSS  F  G+++ + +GP    N  V      K ++ V V +  R    ++  +
Sbjct: 111 VSSERFTPGQQMMIKEGPLCGLNCEVIQYKG-KDKILVRVHMLQRSIMADMPAS 163


>gi|188532399|ref|YP_001906196.1| transcriptional activator RfaH [Erwinia tasmaniensis Et1/99]
 gi|188027441|emb|CAO95288.1| Transcriptional activator [Erwinia tasmaniensis Et1/99]
          Length = 166

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E          L         P   +    +G+        
Sbjct: 1   ME-SWYLLYCKRGQLLRAQE---------HLGRQAVHCLSPMVSIEKTVRGKPTRVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ V    I  +      ++      
Sbjct: 51  FPNYLFVEFDPESIHTTTISATRGVSHFVRFGNQPATVPLDVINALQTHPALSIDDAEL- 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
              +VG+ V +++G F     I    D E +R  + + +  +  
Sbjct: 110 --PQVGDTVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150


>gi|227821697|ref|YP_002825667.1| hypothetical protein NGR_c11290 [Sinorhizobium fredii NGR234]
 gi|227340696|gb|ACP24914.1| hypothetical protein NGR_c11290 [Sinorhizobium fredii NGR234]
          Length = 169

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG--RKVNSERRFF 61
            WY+V+  +  ++KA             +     +  P  R  +      + +  E   F
Sbjct: 3   HWYVVRTRAGQQQKA---------TREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLF 53

Query: 62  PGYVLIKAVMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            GYV     ++D      ++    V+   G    P      E      +           
Sbjct: 54  TGYVFAYLRISDFGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRPPV 113

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V V DGP       V N+   ++ +   V IFG +  VE+    + ++
Sbjct: 114 RRLKAGDTVQVKDGPLTGHYAAVTNIVGRRA-IKAFVEIFGSLREVEIGLESIRRV 168


>gi|189499920|ref|YP_001959390.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
 gi|189495361|gb|ACE03909.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1]
          Length = 169

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 10/141 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V V S  EKK  +    R              +P          RK       F GY
Sbjct: 9   WYAVYVRSRFEKKIHQLFEDR---------GITSFLPLVDTWRQWSDRKKKVSMPLFKGY 59

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V ++       Y  + +T  V+ F+G    PS + D +IE I   V              
Sbjct: 60  VFVRINFRKDHYTIL-ETDGVVKFIGIRNVPSVIRDRDIEWIKILVGEPDSLRNVLPEMP 118

Query: 125 VGERVCVSDGPFASFNGIVKN 145
            G+RV V  GPF    G+++ 
Sbjct: 119 AGQRVKVIAGPFVGLEGVIRK 139


>gi|29348295|ref|NP_811798.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569339|ref|ZP_04846749.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29340198|gb|AAO77992.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841358|gb|EES69439.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 168

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W +V V SN EKK  E +           L  E  +P +        R    +R   P
Sbjct: 5   KCWLVVCVQSNREKKTYERL---------SALGFESFLPLQEETRRWSDRSKKVQRVVIP 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             V  +   ++++      +      L     P+ + D+++E     ++ + +   + S 
Sbjct: 56  MVVFARIAPSERISVLRLPSVSRFMVLRGESAPAIIPDAQMERFRFMLDYSEEAVEMCSE 115

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + GE+V V  GP     G +  +D  KS+V V + + G    VE+    VE+I
Sbjct: 116 RIQPGEQVKVIKGPLTGLTGELITMDG-KSKVAVRINMLG-AAMVEVPVGFVERI 168


>gi|260642278|ref|ZP_05415223.2| putative transcriptional regulator [Bacteroides finegoldii DSM
           17565]
 gi|260622942|gb|EEX45813.1| putative transcriptional regulator [Bacteroides finegoldii DSM
           17565]
          Length = 196

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RW +  V    EKK  E    RL++ G+++      +P ++ V     R+   +R   
Sbjct: 24  SKRWLVAVVRIYHEKKTSE----RLTKMGIEN-----FLPIQQEVHKWSDRRKVVDRVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  + +     ++              L     P+ + D ++      ++ + +    S 
Sbjct: 75  PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE+V V  GP A   G + NVD  KS+V V + + G
Sbjct: 135 SPLAPGEKVRVIKGPLAGLEGELVNVDG-KSKVAVRLTMLG 174


>gi|167769207|ref|ZP_02441260.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM
           17241]
 gi|167668847|gb|EDS12977.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM
           17241]
          Length = 169

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 11/171 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++QV +  E    +++           +     +P E  +  + G   +     
Sbjct: 1   MAK-WYVLQVLAGQETAVRDAL---------HIMGIRAAVPQEERLLRKNGGWTSRIYTL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
           FPGYV +    + + Y+ +K  P V+ FLG                +  +    +    S
Sbjct: 51  FPGYVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLRLLSNGGEPLKPS 110

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
            V       V + +G   +F     + D    R  V + + G    + L+ 
Sbjct: 111 RVEELPDGSVRIMEGVLQNFPVRSIHFDRRARRARVGITLCGEPKILTLSM 161


>gi|294054417|ref|YP_003548075.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
           45221]
 gi|293613750|gb|ADE53905.1| NusG antitermination factor [Coraliomargarita akajimensis DSM
           45221]
          Length = 186

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 11/169 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++  +  E  A   +  ++          E   P    +   +  K       FPGY
Sbjct: 24  WFCLRTQTKREHIAAAML-QQIEA-------VESFCPRVSQLRRTRAGKRRFVEAMFPGY 75

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +  ++ K  H    T  V   +  G   +           +     ++ P  S+  E
Sbjct: 76  IFARFNLSQKHRHVTH-TQGVKYLVKHGNRLAIPDTIIESLRASLPNDMIEAPDLSI--E 132

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G  + +  G     NG V      ++RV V +   GR   V ++ + V
Sbjct: 133 EGANIELISGSLQGLNGTVLAQLPAENRVQVLLDFLGREITVAVSADSV 181


>gi|295083926|emb|CBK65449.1| transcription antitermination protein nusG [Bacteroides
           xylanisolvens XB1A]
          Length = 196

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RW +  V    EKK  E    RL++ G+++      +P ++ V     R+   +R   
Sbjct: 24  SKRWLVAIVRICHEKKTSE----RLTKMGIEN-----FLPIQQEVHQWSDRRKVVDRVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  + +     ++              L     P+ + D ++      ++ + +    S 
Sbjct: 75  PMMIFVHVDPREQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE++ V  GP A   G + NV+  KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVNVNG-KSKVVVRLTMLG 174


>gi|292486707|ref|YP_003529577.1| transcriptional activator RfaH [Erwinia amylovora CFBP1430]
 gi|292897941|ref|YP_003537310.1| transcriptional activator [Erwinia amylovora ATCC 49946]
 gi|291197789|emb|CBJ44884.1| transcriptional activator [Erwinia amylovora ATCC 49946]
 gi|291552124|emb|CBA19161.1| Transcriptional activator RfaH [Erwinia amylovora CFBP1430]
 gi|312170771|emb|CBX79033.1| Transcriptional activator RfaH [Erwinia amylovora ATCC BAA-2158]
          Length = 166

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 14/164 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G+        
Sbjct: 1   ME-SWYLLYCKRGQLLRAQEHLERQAV---------HCLSPMVALEKMVRGKPTQVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++         TI  T  V  F+  G  P+ V    I  +  QV   + R    
Sbjct: 51  FPNYLFVEFDPELIHTTTISATRGVSHFVRFGNQPATVPQGVINAL--QVGPGLPRDGGQ 108

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
           +    G+ V +++G F     I    D E +R  + + +  +  
Sbjct: 109 LPL-PGDTVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150


>gi|257791628|ref|YP_003182234.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
 gi|257475525|gb|ACV55845.1| NusG antitermination factor [Eggerthella lenta DSM 2243]
          Length = 173

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y++QV    E+   E    R+       LV +    S  ++   +G         FPGY+
Sbjct: 9   YVLQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLLTETMFPGYL 64

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            + +   +    TIK +      LG       +   E   + +    +     S    + 
Sbjct: 65  FVASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDN 124

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           G  + + +GP       +K +D  K   ++++ +  +   V +    V K
Sbjct: 125 GRTI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 172


>gi|222149506|ref|YP_002550463.1| transcription antitermination protein [Agrobacterium vitis S4]
 gi|221736488|gb|ACM37451.1| transcription antitermination protein [Agrobacterium vitis S4]
          Length = 220

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 16/178 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRFF 61
           RW + +  S  E+   +++              E   P ER     + RK     ER  F
Sbjct: 51  RWVVARCKSGLEQVIRDAL---------TEQGIECWCPCERRRLPPRRRKPAIVVERALF 101

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRPVS 119
            GY+ ++ +  ++ Y  +    ++   +G    P  + ++ +  +    +          
Sbjct: 102 RGYLFVRMIPDNEAYAGLLLASRLQSLMGRDGKPYLMPETLMRQLQLSAKTAERQHMDAC 161

Query: 120 SVFFEV---GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            V       G++V +  GPFA F   V+ V  ++ +V V+V +FG ++ V +  + +E
Sbjct: 162 GVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTMGVDAIE 219


>gi|218710232|ref|YP_002417853.1| transcriptional activator RfaH [Vibrio splendidus LGP32]
 gi|218323251|emb|CAV19428.1| Transcription antiterminator [Vibrio splendidus LGP32]
          Length = 168

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++      +K+A + +          +   E   P   V  V +G++   +   FP
Sbjct: 2   KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIEVEKVVRGKEKLVQEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVSS 120
            Y+ ++        + T++ T  V+ F+  G  P  V    +  +    +    +     
Sbjct: 53  SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEVQGDLVFELKEFEKCCSSEVEDCC 112

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           V FE G+ V ++ G FA    I    D E +R  + V +  +V P+ +    ++
Sbjct: 113 VEFETGQVVKINSGQFAGVEAIYHQKDGE-ARSIMLVKMISQVVPISIENEALQ 165


>gi|329954627|ref|ZP_08295687.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
 gi|328527168|gb|EGF54172.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
          Length = 187

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +  V S  EKK  +    RL+  G++       +P +  +     R+   +R   P 
Sbjct: 17  QWLVAYVQSCLEKKTAQ----RLAAMGIE-----CYLPVQSEIRQWSDRRKRVDRLVIPM 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
            + +     ++              L     P+ + D ++      ++ + +   + SV 
Sbjct: 68  MIFVHVTPQERPLPLSLQAVSRYMVLRGESTPAVIPDEQMAQFRFMLDYSPEAVEMCSVP 127

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V V  GP A   G +  V+  KS+V V + + G    V++    VEK
Sbjct: 128 LAPGDAVKVIKGPLAGLEGELITVNG-KSKVAVRLDMLGCAH-VDIPIGFVEK 178


>gi|311697218|gb|ADQ00090.1| transcriptional activator RfaH [marine bacterium HP15]
          Length = 145

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 5/145 (3%)

Query: 29  SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88
             L +   +   P   V  VR G++       F GY+ IK    ++ ++ ++ T  ++  
Sbjct: 2   QNLLNQHVDCFHPKILVEKVRSGKRTQRLEPLFAGYLFIKLKPGEQNWNKLRSTRGILRI 61

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
           +G G  P+ +  + I+ I  ++ +      +    + G+ V + DGPF   N I +  D 
Sbjct: 62  VGFGNTPATIDQTVIDQINARLAS----VTTQGGLKSGQAVELDDGPFKGLNAIFQCYDG 117

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQV 173
           +  R  V +    +   +++    +
Sbjct: 118 D-ERAVVLINFMQKHQRLKVPITSL 141


>gi|32471651|ref|NP_864644.1| NusG-like protein- transcription activator [Rhodopirellula baltica
           SH 1]
 gi|32397022|emb|CAD72325.1| probable NusG-like protein-putative transcription activator
           [Rhodopirellula baltica SH 1]
 gi|327539892|gb|EGF26494.1| NusG antitermination factor [Rhodopirellula baltica WH47]
          Length = 184

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 14/172 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++   S  EK  +  +      +G+ H    +     +      GR   S    F  Y
Sbjct: 26  WWLLYTKSRQEKAVIRKLRD----AGVPHYAPMVK----QRFRSPAGRMRESFVPLFSTY 77

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V ++     +              L   E        E    +  +             +
Sbjct: 78  VFLRGDDQARYEAIC-----TGSVLKASEIVQVPDLIEDLQQIRSLIVMGVPLTIESQLQ 132

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            GE V V +G FA + G V   + E  R+ V V    +   V+L   Q+EKI
Sbjct: 133 PGEHVRVKNGTFAGYEGTVIRRENET-RLLVFVRFMEQGVSVKLEDCQLEKI 183


>gi|197287347|ref|YP_002153219.1| transcriptional activator RfaH [Proteus mirabilis HI4320]
 gi|227356968|ref|ZP_03841340.1| transcriptional activator [Proteus mirabilis ATCC 29906]
 gi|194684834|emb|CAR46935.1| transcriptional activator [Proteus mirabilis HI4320]
 gi|227162846|gb|EEI47805.1| transcriptional activator [Proteus mirabilis ATCC 29906]
          Length = 166

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++            +I        L+        P   +  + + ++       FP
Sbjct: 2   KNWHLLYCKRGQ---IARAIE------HLERQQVICFTPMVTIEKLIRNKRTLVTEPLFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I+         TI  T  V  F+  G         E+   +     +         
Sbjct: 53  NYLFIQFDPEVIHTTTINSTRGVNAFVRFG-RYPVTVPQEVIDTLQSPTPSSVIYSEENV 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G F     I +  D E  R  + + I        +   + +K
Sbjct: 112 PHSGDYVLITEGVFQGIKAIYQEPDGET-RSILLLKILNNEVKKSVDNKEFKK 163


>gi|265750655|ref|ZP_06086718.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237551|gb|EEZ23001.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 172

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   ER   P
Sbjct: 2   KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 53  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK++
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKML 166


>gi|255533773|ref|YP_003094145.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255346757|gb|ACU06083.1| NGN domain protein [Pedobacter heparinus DSM 2366]
          Length = 176

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY V   S  EKKA +++              E  +P +R +     RK   E     
Sbjct: 11  KKWYPVYTQSRAEKKAYQALL---------SKGIEAYLPLQRQLRQWSDRKKWVEEPLIK 61

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +      +    +  T  +  F+      + + D +IE +   + +  +  ++   
Sbjct: 62  SYLFVHIARQQQTEVLM--TTGISRFIYFSGKIAAMPDRQIEELKLLLASPYELEITEER 119

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKS 151
              GE++ +  GP     G +     +K 
Sbjct: 120 LLPGEKIEIKAGPLKGIRGEIIEYRSQKQ 148


>gi|86148390|ref|ZP_01066682.1| transcriptional activator RfaH [Vibrio sp. MED222]
 gi|85833804|gb|EAQ51970.1| transcriptional activator RfaH [Vibrio sp. MED222]
          Length = 168

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++      +K+A + +          +   E   P   V  V +G++   +   FP
Sbjct: 2   KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIEVEKVVRGKEKLVQEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSS 120
            Y+ ++        + T++ T  V+ F+  G  P  V    +  +    +    +     
Sbjct: 53  SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEVQGDLVFELKEFEKCCSSEVEDCC 112

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           V FE G+ V ++ G FA    I    D E +R  + V +  +V P+ +    ++
Sbjct: 113 VEFESGQVVKINSGQFAGVEAIYHQKDGE-ARSIMLVKMISQVVPISIENEALQ 165


>gi|254797036|ref|YP_003081873.1| putative transcription termination/antitermination factor NusG
           [Neorickettsia risticii str. Illinois]
 gi|254590275|gb|ACT69637.1| putative transcription termination/antitermination factor NusG
           [Neorickettsia risticii str. Illinois]
          Length = 173

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 16/176 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +++V S  E K  + I  R         V ++  P+         +      RF PGY
Sbjct: 9   WCVLRVRSGSESKVCDLIKSRC-----SDKVVDLFSPALIRFDASASK------RFLPGY 57

Query: 65  VLIKAVMT----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           + IK        ++V            FL    +P  ++D +I+ + N + +    P S 
Sbjct: 58  IFIKVAPGSTFLNEVSIMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLSPEVAPESG 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               VG RV +    F +  G V  +DE  S+  V++V  G+   V    +Q++ +
Sbjct: 118 K-ISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 172


>gi|302337848|ref|YP_003803054.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
 gi|301635033|gb|ADK80460.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293]
          Length = 184

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLD---HLVTEITIPSERVVSVRKGRKVNSERR 59
             +Y +QV +  EK+ ++     +++   +    +  ++  P   +   ++G+    +  
Sbjct: 1   MNYYSMQVITRQEKRFMQLAENAIAQFEKEQGVEITGKLLWPRRSLKIRKRGKTTQEQAP 60

Query: 60  FFPGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
            FPGY+  +A  +  +VY  +K     I FL +  +  P+T +  E +++ +        
Sbjct: 61  IFPGYLFWQAESLEPEVYWLLKRNSGFIRFLKSNYDIEPLTGASKELLVHFLNYGEVVGT 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           S+V F  G+R+ V  GP     G ++ V++ K R  +E++++ +   ++ A++ ++K
Sbjct: 121 STVTFGTGDRIVVLSGPMKGLEGNIRKVNKRKGRAKIELMLYEQSFLIDFAFDGIKK 177


>gi|149198910|ref|ZP_01875951.1| transcription antitermination protein NusG [Lentisphaera araneosa
           HTCC2155]
 gi|149137905|gb|EDM26317.1| transcription antitermination protein NusG [Lentisphaera araneosa
           HTCC2155]
          Length = 150

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 10/113 (8%)

Query: 1   MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58
           M    +WY +Q  S  E KA + +  R+ +  +   V E+ +P+E+V +VR+G+K+   R
Sbjct: 1   MEKLGQWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNR 60

Query: 59  RFFPGYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
           +F+PGY+ +   + D+        +H +K+T  +I FLG G+ P P++D EI+
Sbjct: 61  KFYPGYLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG-GDKPVPLSDDEIQ 112


>gi|294777312|ref|ZP_06742765.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
 gi|294448841|gb|EFG17388.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
          Length = 188

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   +R   P
Sbjct: 24  KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 74

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 75  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 134

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK+
Sbjct: 135 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 187


>gi|238750752|ref|ZP_04612251.1| Transcriptional activator rfaH [Yersinia rohdei ATCC 43380]
 gi|238711142|gb|EEQ03361.1| Transcriptional activator rfaH [Yersinia rohdei ATCC 43380]
          Length = 163

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+++        +A E +              +   P   +  + +G+++ +    FP
Sbjct: 2   KYWHLLYCKRGQLLRAKEHLER---------QEVKCWTPIVTIEKIVRGKRIATTEALFP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ I          TI  T  V  F+  G  P+ +    I  + +     +  P   V 
Sbjct: 53  NYLFIAFDPEQIHTTTISATRGVSHFVRFGVQPAVIPAVVIAEMQSHTADKIIDPEVPVA 112

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V +++G F+    I    D E +R  + + +        L   Q EK
Sbjct: 113 ---GDVVTITEGIFSGLQAIYTEPDGE-ARSMLLLNMLNSQVLQSLDNRQFEK 161


>gi|320535930|ref|ZP_08035997.1| transcription termination factor NusG [Treponema phagedenis F0421]
 gi|320147213|gb|EFW38762.1| transcription termination factor NusG [Treponema phagedenis F0421]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 12/176 (6%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVT----EITIPSERVVSVRKGRKVNSERRFF 61
           Y +QV +  E          +S        T    ++  P   +   +KG         F
Sbjct: 4   YALQVQTGKE-------AFFISSVNAGDKETSERWQVYFPQRTLNIRKKGVFFKKNMPVF 56

Query: 62  PGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           PGYV + A  +  K+Y  +K T     FL   +NPSP+   ++  + + +       +S 
Sbjct: 57  PGYVFLAATILDAKLYKKLKSTKGFYRFLPNNQNPSPLFGRDLMLLQHFISFGNLAGISQ 116

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V F+  +R+ +  GP     G +  VD+ K R  +++ ++     ++  +  +E I
Sbjct: 117 VCFDENDRIKILAGPLKGLEGDIVKVDKRKGRAKIKLDMYTDSFLIDFGFEILENI 172


>gi|255530460|ref|YP_003090832.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343444|gb|ACU02770.1| NGN domain protein [Pedobacter heparinus DSM 2366]
          Length = 168

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 14/175 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+V  Y N E+KA+ ++                 +P ++V      RK   E   F
Sbjct: 7   EKNWYVVVTYPNLERKALLNLLKN---------NFIAFLPLQKVQRKWSDRKKTIEIPLF 57

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+ I     D+      D   V  ++  G  P+ +++++I +I   VE+         
Sbjct: 58  PNYLFININEKDRFEAL--DIYGVKRYVTFGGRPAFISETDILNIKRIVESV--DLYIEH 113

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               G+ V +  GPF    GI+      ++R  + V    +   +E+ +  + K+
Sbjct: 114 SLVKGDAVKIIGGPFKDMIGILFK-KSGQARFGIRVESMNQTLSIEICHTLIRKV 167


>gi|311695295|gb|ADP98168.1| transcriptional activator RfaH [marine bacterium HP15]
          Length = 126

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 45  VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104
           +  ++ G++       FPGY+ +    TD ++  ++ T  V+  +G    P+P++D+ I+
Sbjct: 1   MEKIKGGKRSKKLEPLFPGYLFVNLEQTDPMWSKLRSTRGVLRIVGFANKPAPISDAVIQ 60

Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
           HI + +++  ++       + G+ V +S+GPF   N I +  D E  R  V V    +  
Sbjct: 61  HIKDSLDSVAEQ----GGIKPGQAVQLSEGPFEGINAIFQAYDGE-ERAIVLVSFMQKQQ 115

Query: 165 PVELAYNQVEK 175
            + +  + ++K
Sbjct: 116 SIRVPVSAIKK 126


>gi|311281482|ref|YP_003943713.1| transcriptional acivator RfaH [Enterobacter cloacae SCF1]
 gi|308750677|gb|ADO50429.1| transcriptional acivator RfaH [Enterobacter cloacae SCF1]
          Length = 162

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++       ++A E +  +               P   +  + +G++       FP Y
Sbjct: 4   WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMIALEKIIRGKRTTVSEPLFPNY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++         TI  T  V  F+  G +P+ V  + I  +       +  P +     
Sbjct: 55  LFVEFDPEVIHTTTINATRGVSHFVRFGAHPALVPSTVIHQLSIYKPEGIIDPQT---PH 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKS 151
            G+ V +++G F     I    D E  
Sbjct: 112 PGDSVVITEGAFEGLKAIFTEPDGEAR 138


>gi|85058093|ref|YP_453795.1| transcriptional activator RfaH [Sodalis glossinidius str.
           'morsitans']
 gi|84778613|dbj|BAE73390.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
          Length = 163

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 14/164 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A E +  +               P   +  + +G++  +    
Sbjct: 1   MEA-WYLLYCKRGQLLRAKEHLERQAVA---------CLTPMVTLEKIIRGKRTETCEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ I+         TI  T  V  F+  G  P  +  + I  +       V  P + 
Sbjct: 51  FPNYLFIEFDPETIHTTTISATRGVSHFVRFGSLPVIIPSAVINDLREHSFDNVTDPETP 110

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
           +    G++V ++ G F     I    D E +R  + + +  +  
Sbjct: 111 LS---GDKVLITTGVFEGLQAIYTEPDGE-ARSMLLLNLLNKQV 150


>gi|92117920|ref|YP_577649.1| NusG antitermination factor [Nitrobacter hamburgensis X14]
 gi|91800814|gb|ABE63189.1| transcription antitermination protein nusG [Nitrobacter
           hamburgensis X14]
          Length = 196

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 28/197 (14%)

Query: 1   MTPR--WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT--IPSERVVSVRKGRKVNS 56
           MT +  WY++Q     E KA   +  R    G D     +   +P+ R     +      
Sbjct: 1   MTGKSIWYVLQTRPAHEDKAARGLVAR----GFDPYAPVVYRRVPTGRRDDKGRKLTREI 56

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-------- 108
            R  FPGY+ ++    D+ +  ++  P + G+L                ++         
Sbjct: 57  ARPMFPGYIFVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFG 116

Query: 109 -----------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                          A +R      F+ G+ V V  G +  +   V   D +  RV +  
Sbjct: 117 RYLDEEERARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVLLF 175

Query: 158 VIFGRVTPVELAYNQVE 174
            IFGR T +      +E
Sbjct: 176 HIFGRETKIHADQADLE 192


>gi|89071010|ref|ZP_01158230.1| transcriptional antitermination protein, putative [Oceanicola
           granulosus HTCC2516]
 gi|89043434|gb|EAR49650.1| transcriptional antitermination protein, putative [Oceanicola
           granulosus HTCC2516]
          Length = 162

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 25  RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
           RL+   L      +  P ++     +G+  +  +  FPGY+ +              T  
Sbjct: 10  RLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMRAASYTRG 69

Query: 85  VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGI 142
           V   +   E+        +   +           P  +   +VG+RV V+DGP A     
Sbjct: 70  VARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGPLAGQVSR 129

Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           +  +  E +R+ + + + GR T V +    V +
Sbjct: 130 IIALAPE-ARIWLLLDLMGRQTRVAVKREAVRR 161


>gi|160885686|ref|ZP_02066689.1| hypothetical protein BACOVA_03690 [Bacteroides ovatus ATCC 8483]
 gi|237719467|ref|ZP_04549948.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293370208|ref|ZP_06616768.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|298482878|ref|ZP_07001061.1| transcriptional regulator [Bacteroides sp. D22]
 gi|299146176|ref|ZP_07039244.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|156108499|gb|EDO10244.1| hypothetical protein BACOVA_03690 [Bacteroides ovatus ATCC 8483]
 gi|229451327|gb|EEO57118.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292634705|gb|EFF53234.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|298271078|gb|EFI12656.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298516667|gb|EFI40548.1| putative transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 196

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RW +  V    EKK  E    RL++ G+++      +P ++ V     R+   +R   
Sbjct: 24  SKRWLVAIVRICHEKKTGE----RLTKMGIEN-----FLPIQQEVHQWSDRRKIVDRVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  + +   + ++       +      L     P+ + D ++      ++ + +    S 
Sbjct: 75  PMMIFVHVDLQEQKEVLTLSSISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE++ V  GP A   G + +V+  KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174


>gi|94970525|ref|YP_592573.1| transcription antitermination protein nusG [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552575|gb|ABF42499.1| transcription antitermination protein nusG [Candidatus Koribacter
           versatilis Ellin345]
          Length = 194

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFPG 63
           W  +  Y   EKK  E +  R           E  +P        K R+  +     FPG
Sbjct: 27  WSALFTYPRHEKKVAEQLLCR---------GVESFLPLYAEKRTWKNRQTVTLTLPLFPG 77

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV  +    D+V       P V+  +      S ++D  IE +   +     RP      
Sbjct: 78  YVFARFARRDRVRVM--SLPGVVSIVERAGAVSSISDHYIEKLRAGIRLGRVRPFRE--A 133

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            +G+RV ++ GP +   G V      + RV V + + G+   +E+  +++
Sbjct: 134 ILGDRVQITSGPLSGLEG-VLMHFRSEFRVVVSIGMIGQSVSIEVLRDEI 182


>gi|319642711|ref|ZP_07997355.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
 gi|317385646|gb|EFV66581.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
          Length = 188

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   +R   P
Sbjct: 24  KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 74

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 75  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTE 134

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK+
Sbjct: 135 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 187


>gi|160941421|ref|ZP_02088757.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435631|gb|EDP13398.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 160

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 14/165 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+VQV +  EK              L  +  +   P E       G     E   FPGY
Sbjct: 3   WYVVQVRTGEEKDIAA---------KLTDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGY 53

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V ++       Y+ +K  P ++  L          ++E   ++         P      E
Sbjct: 54  VFLQMDYNAGNYYRLKAVPGIVKLLSG---TLTYLEAEWIRLLAGQGGRPLEPTLMRETE 110

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            G  + +  G   +F   +  +D+   R  +E+ I G    V+L 
Sbjct: 111 EG--LEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLG 153


>gi|260174451|ref|ZP_05760863.1| putative transcriptional regulator [Bacteroides sp. D2]
 gi|315922718|ref|ZP_07918958.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696593|gb|EFS33428.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 189

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RW +  V    EKK  E    RL++ G+++      +P ++ V     R+   +R   
Sbjct: 24  SKRWLVAIVRICHEKKTGE----RLTKMGIEN-----FLPIQQEVHQWSDRRKIVDRVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  + +   + ++       +      L     P+ + D ++      ++ + +    S 
Sbjct: 75  PMMIFVHVDLQEQKEVLTLSSISRYLVLRGESTPAIIPDQQMSRFKFMLDYSDETISLST 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE++ V  GP A   G + +V+  KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174


>gi|237714513|ref|ZP_04544994.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406377|ref|ZP_06082926.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643258|ref|ZP_06721084.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CC 2a]
 gi|294806451|ref|ZP_06765292.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445282|gb|EEO51073.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355080|gb|EEZ04171.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641381|gb|EFF59573.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CC 2a]
 gi|294446314|gb|EFG14940.1| transcription termination/antitermination factor NusG [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 196

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RW +  V    EKK  E    RL++ G+++      +P ++ V     R+   +R   
Sbjct: 24  SKRWLVAIVRICHEKKTSE----RLTKMGIEN-----FLPIQQEVHQWSDRRKVVDRVLL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  + +     ++              L     P+ V D ++      ++ + +    S 
Sbjct: 75  PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVVPDQQMLRFKFMLDYSDETISMST 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GER+ V  GP A   G + +V+  KS+V V + + G
Sbjct: 135 SPLAPGERIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174


>gi|226497218|ref|NP_001151355.1| transcription termination factor nusG family protein [Zea mays]
 gi|195646054|gb|ACG42495.1| transcription termination factor nusG family protein [Zea mays]
          Length = 336

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 53/224 (23%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
           P+W++V+V        V+ +   +SR     +  +I  PS +V    + G      +   
Sbjct: 103 PQWWLVRVSMAPGTDYVDLLTKAISRR-YSEVPFKIYNPSIQVKRRLKSGAISVKSKPLH 161

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEAA 113
            G V +   +  +++  I+DT    GF+G          + P P+   E+E I+ + +  
Sbjct: 162 AGLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDEVESIIREEKEE 221

Query: 114 VQRPVSSVF-------------------------------------------FEVGERVC 130
            +R                                                 F  G  V 
Sbjct: 222 QERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTRHSAFSPGATVH 281

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           V  GPFA F G +  V+ +  +  V++ +FG+ + V+L ++Q+E
Sbjct: 282 VLSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIE 325


>gi|167763647|ref|ZP_02435774.1| hypothetical protein BACSTE_02022 [Bacteroides stercoris ATCC
           43183]
 gi|167698941|gb|EDS15520.1| hypothetical protein BACSTE_02022 [Bacteroides stercoris ATCC
           43183]
          Length = 206

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +  V S  EKK  +    RL+  G++       +P +  +     R+   +R   P 
Sbjct: 17  QWLVAYVQSCLEKKTAQ----RLAAMGIE-----CYLPVQSEIRQWSDRRKRVDRLVIPM 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
            + +     ++              L     P+ + D +++     ++ + +   + S  
Sbjct: 68  MIFVHVTPQERPLPLSLQAVSRYMVLRGESTPAVIPDEQMDRFRFMLDYSPEAVEMCSAP 127

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V V  GP A   G +  V+  KS+V V + + G    V++    VEK
Sbjct: 128 LAPGDAVKVIKGPLAGLEGELITVNG-KSKVAVRLDMLGCAH-VDVPIGFVEK 178


>gi|149910552|ref|ZP_01899191.1| putative transcriptional activator RfaH [Moritella sp. PE36]
 gi|149806395|gb|EDM66368.1| putative transcriptional activator RfaH [Moritella sp. PE36]
          Length = 174

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 10/172 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      E           +   L +   E   P+  V    + + +  E   FP
Sbjct: 6   KDWYLLYCK-GKE--------EPRALINLKNQGIESFYPTMTVEKKLRNKLICQEIAIFP 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +        +++I+ T  VI F+  G N + V  + +  +        +       
Sbjct: 57  NYLFVAIDKNTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTV 116

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           F  GE V + DG F     I +  D    R  + + +    T + +A  +++
Sbjct: 117 FSEGETVIIQDGAFKGIEAIYQCKDG-LERSMLLINLINHSTTMSVANGEIK 167


>gi|146298121|ref|YP_001192712.1| NusG antitermination factor [Flavobacterium johnsoniae UW101]
 gi|146152539|gb|ABQ03393.1| transcription antitermination protein nusG [Flavobacterium
           johnsoniae UW101]
          Length = 154

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V      EKK  E          L  +  E   P    V     RK   E   F 
Sbjct: 1   MNWYVVYTKPKWEKKVAE---------KLTQIGIECYCPLITQVKQWSDRKKKVEMPLFN 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV I+    D+      +   ++ +L     P+ V D EI  I N ++A+    +S   
Sbjct: 52  SYVFIQIEDADRNSVF--EVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVSQ 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +VG+++ +  G F++ N IV+ V +    + +E
Sbjct: 110 IQVGDKIKLETGAFSNQNAIVQEVSKTHYILVLE 143


>gi|295106883|emb|CBL04426.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 172

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++QV    E+   E    R+S      L+ E    S +++  +KG         FPGY
Sbjct: 7   WHVLQVAPGQERSMAE----RVSSLAGPDLLRECFPLSYQLLKKQKGTWRLVTEVMFPGY 62

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +     D V   +K +      LG G+    +T  E   +     A     +S    E
Sbjct: 63  VFLSTGDIDAVRERLKLSTSFARLLGAGDAIFSLTSEEAAFVSEFGGADHVVGMSQGVIE 122

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G  V V  GP     G+V+ +D  K   +++V +  +   V +      K
Sbjct: 123 DGRTV-VRSGPLRGREGLVRKIDRHKRVAYLDVGLLDQA-RVRVGLEITRK 171


>gi|254885039|ref|ZP_05257749.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837832|gb|EET18141.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 166

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   ER   P
Sbjct: 2   KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 53  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK+
Sbjct: 113 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165


>gi|150005199|ref|YP_001299943.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|149933623|gb|ABR40321.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
          Length = 166

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   +R   P
Sbjct: 2   KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 53  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK+
Sbjct: 113 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165


>gi|153806651|ref|ZP_01959319.1| hypothetical protein BACCAC_00921 [Bacteroides caccae ATCC 43185]
 gi|149131328|gb|EDM22534.1| hypothetical protein BACCAC_00921 [Bacteroides caccae ATCC 43185]
          Length = 188

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RW +  V  + EKK  E    RL++ G+++      +P ++ V     R+   +R   
Sbjct: 24  SKRWLVAIVRIHHEKKTSE----RLTKMGVEN-----FLPIQQEVHNWSDRRKVVDRVIL 74

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P  + +     ++              L     P+ + D ++      ++ + +    S 
Sbjct: 75  PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETICMST 134

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                GE++ V  GP A   G + +++  KS+V V + + G
Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVDMNG-KSKVAVRLTMLG 174


>gi|116329514|ref|YP_799234.1| transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329829|ref|YP_799547.1| transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122258|gb|ABJ80301.1| Transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123518|gb|ABJ74789.1| Transcription antiterminator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 179

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +      EKK    +  R           E  +P          R    E   +P Y
Sbjct: 10  WYALYTNPRAEKKLKRLLQERK---------IECFLPLISKKKKWSDRWKVVEEPMYPSY 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +K          ++  P    F+     P  + D ++  I   +E    R    +   
Sbjct: 61  IFVKISFFQDRVKILQ-LPGAHHFVFYSGKPYVIPDEDLNLIRIFLETYPDRIQVEIQER 119

Query: 125 --VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              G+++ + +GPFA F   +     EK  + V+      +T V L    ++
Sbjct: 120 LLPGKKILIQEGPFAGFKAEIIQRKNEKQ-IIVKFPGMNLMTSVTLDIKTLK 170


>gi|88608554|ref|YP_506561.1| putative transcription termination/antitermination factor NusG
           [Neorickettsia sennetsu str. Miyayama]
 gi|88600723|gb|ABD46191.1| putative transcription termination/antitermination factor NusG
           [Neorickettsia sennetsu str. Miyayama]
          Length = 176

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 16/176 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +++V S  E K  + I  R         V ++  P+         +      RF PGY
Sbjct: 12  WCVLRVRSGSESKVCDLIKSRC-----SDEVVDLFSPALVKFDASASK------RFLPGY 60

Query: 65  VLIKAVMTDKV----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           V +K V                     FL    +P  ++D +I+ + N + +    P S 
Sbjct: 61  VFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLSPEVTPESG 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               VG RV +    F +  G V  +DE  S+  V++V  G+   V    +Q++ +
Sbjct: 121 K-ISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 175


>gi|224023977|ref|ZP_03642343.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM
           18228]
 gi|224017199|gb|EEF75211.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM
           18228]
          Length = 175

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 16/178 (8%)

Query: 1   MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M    WY + V  + EKK  E +     + G++H +    +  +     +K + V     
Sbjct: 1   MEKENWYAMYVRMHHEKKVAEKL----GQMGVEHYLPVQEVVRQWSDRRKKLQVVVIPMM 56

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKV--IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            F                 +++ P V           P+ + D E++     ++ + +  
Sbjct: 57  IFIR------ASEQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAV 110

Query: 118 VS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              +     G+++ V  GP A  +G +  +D  KS+V V +   G    VE+    VE
Sbjct: 111 HFINTPLAPGQKIRVIKGPLAGLDGELTEIDG-KSQVMVRIEQLGYA-SVEMPVGYVE 166


>gi|171910013|ref|ZP_02925483.1| NusG antitermination factor [Verrucomicrobium spinosum DSM 4136]
          Length = 158

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 37  EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
           E   P  R        KV      FP Y   + V ++  +  +K T  VI  +G G +P+
Sbjct: 8   ETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYSEA-HRAVKHTHNVIRIVGFGGDPA 66

Query: 97  PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           P+ D      + +     +        EVG+ V V++GP     G+V+++   + RV + 
Sbjct: 67  PIPD-LTIENLREEMQGAELREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKLL 125

Query: 157 VVIFGRVTPVEL 168
           +   GR + VE+
Sbjct: 126 LEFLGRQSLVEV 137


>gi|237711067|ref|ZP_04541548.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454911|gb|EEO60632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 166

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   ER   P
Sbjct: 2   KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +     ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 53  MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK+
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165


>gi|222149046|ref|YP_002550003.1| transcription antitermination protein [Agrobacterium vitis S4]
 gi|221736031|gb|ACM36994.1| transcription antitermination protein [Agrobacterium vitis S4]
          Length = 220

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 19/180 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRFF 61
           RW + +  S  E+   +++              +   P ER     + RK     ER  F
Sbjct: 51  RWVVARCKSGLEQVIRDALAE---------QGIDCWCPCERRRLPPRRRKPALVVERPLF 101

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GY+ ++ +  ++ Y  +    ++   +G    P  + ++ +  +    +AA +R + + 
Sbjct: 102 RGYLFVRVIPDNEAYAGLLLASRLQSLMGQDGKPYLMPETLMRQLQLSAKAAERRHMDAG 161

Query: 122 FFEV-----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                    G++V +  GPFA F   V+ V  ++ +V V+V +FG ++ V +    VE I
Sbjct: 162 DVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTVG---VEAI 218


>gi|319952677|ref|YP_004163944.1| transcription antitermination protein nusg [Cellulophaga algicola
           DSM 14237]
 gi|319421337|gb|ADV48446.1| transcription antitermination protein nusG [Cellulophaga algicola
           DSM 14237]
          Length = 157

 Score = 68.5 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V V S  EKK  E +              E+  P  + V     RK   E   F 
Sbjct: 1   MNWYVVYVQSKKEKKVAEILQKM---------QIEVYCPLIKEVKQWSDRKKTIESPLFK 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV ++  + DK    + D P V+ +L     P+ V D EI  I   +E      ++   
Sbjct: 52  SYVFVR--LHDKERSNVFDVPGVVRYLFWLGQPAIVRDEEIAIIKKWLEDDTIEEITLHK 109

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              G+ + + +GP      I++ V   K R+ + +
Sbjct: 110 LLPGDEILIKNGPLKDKKAIIQEV--GKKRIRLAI 142


>gi|255691805|ref|ZP_05415480.1| putative transcriptional regulator [Bacteroides finegoldii DSM
           17565]
 gi|260622523|gb|EEX45394.1| putative transcriptional regulator [Bacteroides finegoldii DSM
           17565]
          Length = 191

 Score = 68.5 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW + QV    EKK  E    RL++ G+++      +P +R   +   R+   +    P
Sbjct: 27  KRWLVAQVRIYHEKKTSE----RLTKMGIENY-----VPVQRKTHLWSDRRKQIDHIVIP 77

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
             + ++    ++    +         L     P+ + D+++E     ++ + +    S  
Sbjct: 78  MKIFVRVDAQEQKDVLMLSAVSRYMVLHGESAPAVIPDTQMEKFKFMLDYSEEAVNMSNT 137

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
               GE+V V  GP     G +  ++  K+++ V + + G    V++    +E++V
Sbjct: 138 PLSPGEKVRVIKGPLRGLEGELVTLNG-KTKIAVRLDMLGCA-SVDMPVGYIERVV 191


>gi|212694663|ref|ZP_03302791.1| hypothetical protein BACDOR_04194 [Bacteroides dorei DSM 17855]
 gi|212663164|gb|EEB23738.1| hypothetical protein BACDOR_04194 [Bacteroides dorei DSM 17855]
          Length = 166

 Score = 68.5 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W +  V  + EKK  E    RL+   +++      +P +  +     RK   ER   P
Sbjct: 2   KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121
             + +   + ++              L     P+ + D ++E     ++ + +   + + 
Sbjct: 53  MMIFVHVDVAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE + V  GP     G +  VD  K++V V + + G    V++    VEK+
Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165


>gi|84393780|ref|ZP_00992527.1| transcriptional activator RfaH [Vibrio splendidus 12B01]
 gi|84375577|gb|EAP92477.1| transcriptional activator RfaH [Vibrio splendidus 12B01]
          Length = 168

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY++      +K+A + +          +   E   P   V  V +G++   +   FP
Sbjct: 2   KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIDVKKVVRGKEKQVKEPLFP 52

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ ++        + T++ T  V+ F+  G  P  V    +  +    +     P    
Sbjct: 53  SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPHEVQGDLVYELKEFEKCCEDEPEECC 112

Query: 122 F-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             FE G+ V ++ G FA    I    D E +R  + V +  +V P+ +    ++
Sbjct: 113 VEFESGQVVKINSGQFAGVEAIFHQKDGE-ARSIMLVKMISKVVPISIENEALQ 165


>gi|139436873|ref|ZP_01771033.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC
           25986]
 gi|133776520|gb|EBA40340.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC
           25986]
          Length = 167

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%)

Query: 23  GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
             R+ R      + E+  P  +      G  V++ +  FPGY++        V   +   
Sbjct: 2   RERIERMVPASAMQELFYPQYQTEIKVHGEWVSTTKPLFPGYLICDTADPRTVQQYLLRM 61

Query: 83  PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142
                 L       P+   E + I +      +    S   + G++V V+ GP     G+
Sbjct: 62  DDFARVLSQDGQFVPLAKEETQLIGSFTNRGDRVVPMSEALKDGDQVVVTAGPLLGHEGL 121

Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +K ++  KS  ++E+ + GR     +  
Sbjct: 122 IKTINRRKSTAYLELDLCGRRVTTRVGL 149


>gi|83814623|ref|YP_444769.1| putative transcriptional regulator [Salinibacter ruber DSM 13855]
 gi|294506613|ref|YP_003570671.1| transcription antitermination protein nusG [Salinibacter ruber M8]
 gi|83756017|gb|ABC44130.1| putative transcriptional regulator [Salinibacter ruber DSM 13855]
 gi|294342941|emb|CBH23719.1| Transcription antitermination protein nusG [Salinibacter ruber M8]
          Length = 229

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 18/174 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +    +  EKKA + +  R           E+ +P +  +     RK       F  Y
Sbjct: 61  WRVFYTRARAEKKAEQRLEDRR---------IEVLVPKKTEMRQWSDRKKEVTEPLFRNY 111

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +    D++      T  ++  +     P+ + +   + +        +   + +  +
Sbjct: 112 LFARVGEKDRIRVL--RTNGIVRCVHFDGEPAQLREDTAQRLKKIQAVPDRLSTADLRPQ 169

Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVE--VVIFGRVTPVELAYNQVE 174
           VG  V ++DGP       G V      + R +V   V    +   VE+    VE
Sbjct: 170 VGSTVTITDGPERLRGLTGEVLE---HRGRTYVLLRVKAVRQAVKVEVNAKWVE 220


>gi|160889704|ref|ZP_02070707.1| hypothetical protein BACUNI_02131 [Bacteroides uniformis ATCC 8492]
 gi|317478746|ref|ZP_07937899.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|156860696|gb|EDO54127.1| hypothetical protein BACUNI_02131 [Bacteroides uniformis ATCC 8492]
 gi|316905081|gb|EFV26882.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 179

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +  V S  EKK  E    RL   G++       +P +  +     R+   +R   P 
Sbjct: 15  QWLVAYVQSCLEKKTAE----RLKAMGVE-----YYLPIQSEIRQWSDRRKKVDRLVIPM 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
            + +     ++              L     P+ + + ++E     ++ + +   + S  
Sbjct: 66  MIFVHVTPQERPLPLTLQAISRYMVLRGESRPAVIPEEQMERFRFMLDYSPEAVEICSTP 125

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              G+ V V  GP A   G +  +   KS+V V + + G    V++    VE+I
Sbjct: 126 LAAGDAVKVIKGPLAGLEGELVMI-GGKSKVAVRLDMLGCAH-VDMPIGYVERI 177


>gi|222148453|ref|YP_002549410.1| Transcription antiterminator protein [Agrobacterium vitis S4]
 gi|221735441|gb|ACM36404.1| Transcription antiterminator protein [Agrobacterium vitis S4]
          Length = 218

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 16/165 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP--SERVVSVRKGRKVNSERRFF 61
           RW +    S  E+   +S+         D    E   P    +    R  + V  +R  F
Sbjct: 49  RWVVASCKSGMEQVIRDSL---------DQQGIECWCPCERHKWPPRRGKQAVEIQRALF 99

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GY+ +K +  ++ +  +    K+ G +G    P  + +  +  +M   + A ++ +   
Sbjct: 100 RGYLFVKVIPDNEAFVGLMLASKLRGLMGKDGKPHLMPEPLMRQLMLSAKKAERKHMDVG 159

Query: 122 FFEV-----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                    G++V +  GPFA F   V+ V  ++ +V V+V +FG
Sbjct: 160 DVPPMPDVLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFG 204


>gi|242037557|ref|XP_002466173.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor]
 gi|241920027|gb|EER93171.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor]
          Length = 334

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 53/226 (23%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
           P+W++V+V        V+ +   +SR     +  +I  PS +V    + G      +   
Sbjct: 101 PQWWLVRVSMAPGTDYVDLLTKAISRR-YPEVTFKIYNPSIQVKRRLKSGAISVKSKPLH 159

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEAA 113
           PG V +   +  +++  I+DT    GF+G          + P P+   E+E I+ + +  
Sbjct: 160 PGLVFMHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPIDEVESIIREEKEE 219

Query: 114 VQRPVSSVF-------------------------------------------FEVGERVC 130
            +R                                                 F  G  V 
Sbjct: 220 QERVDREFEEMENMGNVEPFSKPVEESELMLMNKIKKQFKKSSLNGGTRHSAFSPGATVH 279

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  GPF  F G +  V+ +  +  V++++FG+ + V+L ++Q+E I
Sbjct: 280 VLSGPFEDFTGSILEVNRKNKKATVQLILFGKESFVDLDFDQIEAI 325


>gi|53714067|ref|YP_100059.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           fragilis YCH46]
 gi|60682261|ref|YP_212405.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|253564711|ref|ZP_04842167.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766312|ref|ZP_06094353.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52216932|dbj|BAD49525.1| putative transcriptional regulator UpxY homolog [Bacteroides
           fragilis YCH46]
 gi|60493695|emb|CAH08484.1| putative transcriptional regulator (pseudogene) [Bacteroides
           fragilis NCTC 9343]
 gi|251946176|gb|EES86553.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253980|gb|EEZ25445.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163738|emb|CBW23292.1| putative transcriptional regulator (pseudogene) [Bacteroides
           fragilis 638R]
          Length = 172

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W    V    EKK       RL+  G++       +P +  +     R+   ER   P
Sbjct: 2   KSWLAAYVRLYHEKKT----RDRLTAMGIES-----FLPVQEEIHQWSDRRKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
             + +     ++       +      L     P+ + D ++E     ++ + +   V S 
Sbjct: 53  MMIFVHVDPAERAEVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVCSS 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE+V V  GP A   G +  +D  KS+V V + + G    V++    VE++
Sbjct: 113 PLAPGEQVRVIKGPLAGLEGELVTIDG-KSKVAVRLDMLGCAH-VDMPVGFVERV 165


>gi|323486156|ref|ZP_08091485.1| hypothetical protein HMPREF9474_03236 [Clostridium symbiosum
           WAL-14163]
 gi|323693006|ref|ZP_08107226.1| hypothetical protein HMPREF9475_02089 [Clostridium symbiosum
           WAL-14673]
 gi|323400482|gb|EGA92851.1| hypothetical protein HMPREF9474_03236 [Clostridium symbiosum
           WAL-14163]
 gi|323502887|gb|EGB18729.1| hypothetical protein HMPREF9475_02089 [Clostridium symbiosum
           WAL-14673]
          Length = 172

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 5/154 (3%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++   S  E+  + S    LS+  LD         S   +    G       R FP Y
Sbjct: 6   WYVLHCKSGQEETIIRSCKHHLSKPALDD----AFQFSYERMKKYLGEWHVDTYRMFPDY 61

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +++   + +   +K    +   L   +   PV   E   I           +S     
Sbjct: 62  VFLQSSRPELLLKELKQYRDITDVLAQEDMLLPVQPEEEAMIRTLCGERHHMGLSRGLVR 121

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            G      +GP A    +++ +D  K    + + 
Sbjct: 122 NG-SFRAVNGPLAGKEALIRKLDLHKRIAVLNLK 154


>gi|255010372|ref|ZP_05282498.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313148171|ref|ZP_07810364.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136938|gb|EFR54298.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 172

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W    V    EKK       RL+  G++       +P +  +     R+   ER   P
Sbjct: 2   KSWLAAYVRLYHEKKT----RDRLTAMGIES-----FLPVQEEIHQWSDRRKKIERVVIP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121
             + +     ++       +      L     P+ + D ++E     ++ + +   V S 
Sbjct: 53  MMIFVHVDPAERAEVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVCSS 112

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE+V V  GP A   G +  ++  KS+V V + + G    V++    VE++
Sbjct: 113 PLAPGEQVRVIKGPLAGLEGELVTING-KSKVAVRLDMLGCAH-VDMPVGFVERV 165


>gi|296447007|ref|ZP_06888941.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
 gi|296255450|gb|EFH02543.1| NusG antitermination factor [Methylosinus trichosporium OB3b]
          Length = 210

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 10/160 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+++ Y   +      +    +++  +       I +  +       +       F 
Sbjct: 1   MNWYVIECYPGQDFDVCRKL----AQADYNIWRPMKKI-TTTLREGPMRGRRCRSVPRFG 55

Query: 63  GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            Y+ +   +T  + +    +T         G +   +   E  + +  +          +
Sbjct: 56  RYLFLDCELTPGRRFAISTETGVRGFLKRAGVDEPAIVPDEWMNFL--MFGKAIEDRRGI 113

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            F  G RV V+ GP     G+V++VD+      V +  FG
Sbjct: 114 VFAPGTRVTVNAGPLRGREGVVRSVDD--GTAKVILDAFG 151


>gi|284041134|ref|YP_003391064.1| NusG antitermination factor [Spirosoma linguale DSM 74]
 gi|283820427|gb|ADB42265.1| NusG antitermination factor [Spirosoma linguale DSM 74]
          Length = 160

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+++   S  EK   E +              E+  P  +       R    E   F  Y
Sbjct: 3   WFVLYTKSRNEKIVAEKLRA---------KDIEVYCPMIKRSRQWSDRVKVVEEPLFRSY 53

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
             +K  + ++  H +   P ++ +L     P+ V D+EI+ I + +       +      
Sbjct: 54  CFVK--LDERRRHEVFSVPGLVRYLFWEGKPAIVRDAEIDSIKSMLAEVDHDLIHIKPLH 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
            G ++ +  G F    G V   D     V V +     V  V+L
Sbjct: 112 PGTQLTIKSGSFRDSIGTVVRQDG--RIVTVVLESLQMVLKVDL 153


>gi|320540297|ref|ZP_08039949.1| DNA-binding transcriptional antiterminator [Serratia symbiotica
           str. Tucson]
 gi|320029617|gb|EFW11644.1| DNA-binding transcriptional antiterminator [Serratia symbiotica
           str. Tucson]
          Length = 158

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 18/176 (10%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++        +A + +  +               P   +  + +G+++      
Sbjct: 1   ME-SWYLLYCKRGQLSRAQKHLKWQAVN---------CFTPIITLEKIVRGKRIAVSEPL 50

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ +    T     T+  T  V  F+  G  P+ +    IE +   V      P + 
Sbjct: 51  FPNYLFVLFDHT----TTLSATRGVSHFVRFGALPATIPYRVIEELQIHVGETCVDPQT- 105

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              + G+ V + +G F     I    D E  R  + + +  +     L   Q +K+
Sbjct: 106 --PQPGDTVLIVNGVFEGLCAIYTEPDGET-RSMLLLNLLHKQVSQSLDNRQFQKV 158


>gi|24212747|ref|NP_710228.1| transcription antiterminator [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45655955|ref|YP_000041.1| transcription activator or transcription antitermination factor
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|24193386|gb|AAN47246.1| transcription antiterminator [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599188|gb|AAS68678.1| transcription activator or transcription antitermination factor
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 179

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      EKK       R           E  +P          R    E   +P Y
Sbjct: 10  WYVLYTNPRSEKKLKRLFQERK---------IECFLPLISKKKKWSDRWKVIEEPMYPSY 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +K          ++  P    F+     P  + + +++ +   +E    +    +  +
Sbjct: 61  IFVKISFFKDRVRILQ-LPGAHHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEK 119

Query: 125 --VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              G++V + +GPFA F   +     E+  V V+      VT V L    ++
Sbjct: 120 LLPGKKVLIQEGPFAGFKAEIIQRKNEEQIV-VKFPGMNLVTSVTLDIKTLK 170


>gi|94266952|ref|ZP_01290603.1| NGN [delta proteobacterium MLMS-1]
 gi|93452357|gb|EAT02982.1| NGN [delta proteobacterium MLMS-1]
          Length = 176

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 32/188 (17%)

Query: 1   MTPR-----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           M  +     WY ++   + E          ++R    +    + +P  RVV     R+  
Sbjct: 1   MPKQIPSLAWYAIRTKPHKE---------EMARQHYLNQQYTVYLPLMRVVRSHARRRQV 51

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
             R  FPGY+ ++       +  I  T   IG L  GE+  PV D  IE +  + +    
Sbjct: 52  VFRPVFPGYLFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGV 111

Query: 116 RPVSSVFFE---VGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
               +   E    G  V V+        G F SF G        K  V + + I  R   
Sbjct: 112 IAPGAFQKEKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVR 163

Query: 166 VELAYNQV 173
             +  ++V
Sbjct: 164 TTVPLDRV 171


>gi|153009640|ref|YP_001370855.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
 gi|151561528|gb|ABS15026.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188]
          Length = 217

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 13/176 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG--RKVNSERRFFP 62
           W ++QV S  E    E++G             E+ +P +    +R+        ++    
Sbjct: 51  WLVLQVMSGRELSVREALGKE---------NIEVLVPMKMGPKIRRQGREIPAKKQPVMN 101

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYVL + +++++    +     V+  LG  E P  V+  ++     + E           
Sbjct: 102 GYVLARCMISNECLAGLLSFENVVSILGGYETPFLVSAEKVFVFRAKAEDGQYDYEHFHR 161

Query: 123 FEVG-ERVCVSDGPFASFNGI-VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             +G +   V+DGPFA      V    +    V +EV I GR   + +    +E +
Sbjct: 162 KFIGVKWARVADGPFAGCRAELVSGGTKGNGLVVIEVSIMGRPVAMTVPIAILEPL 217


>gi|163757089|ref|ZP_02164194.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1]
 gi|161322989|gb|EDP94333.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1]
          Length = 188

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62
            W+++      EKKA   +  R           E+ +P  + + + K R+    +   FP
Sbjct: 28  NWFVLYTAPRAEKKAKLELEYR---------GYEVFLPMTKSLRIWKNRQKKLIDSVLFP 78

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +K    ++    I    K+  ++  G  P  V+   IE I   + +  Q       
Sbjct: 79  SYIFVKTD--ERYLAEICRINKIATYIHCGGKPCKVSPECIEAIKC-MLSMDQEISVGND 135

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F  GE V + +GP A +NG++    + K++  + +    +V  +E+  + +EK
Sbjct: 136 FIEGESVRIVEGPLAGYNGVLVQ-QKSKTKFGIHLKEINQVASIEICTSALEK 187


>gi|302038023|ref|YP_003798345.1| putative transcription termination/antitermination factor NusG
           [Candidatus Nitrospira defluvii]
 gi|300606087|emb|CBK42420.1| putative Transcription termination/antitermination factor NusG
           [Candidatus Nitrospira defluvii]
          Length = 187

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY +   S  EK   + +           +  E  +P  + +S    RKV +E   F G
Sbjct: 24  HWYAISTRSRHEKLVRDRL---------AGIGVEPFLPLVKKLSQWTDRKVWTESPLFSG 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y   +  +     H +  TP  +  +G+          E    + ++  + +      + 
Sbjct: 75  YCFARFSL--MNSHAVLQTPGTVRIVGSL--IPESIPDEEVAAIQKLAESRRAFERHDYL 130

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G  V V  GP     G +      +  + + V +  +   V +  ++V+ I
Sbjct: 131 TEGAWVEVVRGPLTGLRGQLLR-KANQDCLVIRVHLIQQAATVHIDMSEVQPI 182


>gi|77361554|ref|YP_341129.1| transcriptional activator RfaH [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876465|emb|CAI87687.1| putative Transcriptional activator RfaH [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 161

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 14/172 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+V      E++A  ++          +       P      + KGR+   +   FPGY
Sbjct: 4   WYLVVCKPRQEERAQVNLK---------NQGIASFFPKLTTEKLVKGRRTVKQSALFPGY 54

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V +     +  +  +K+T  V GF+  G     V       ++NQ++A       S   +
Sbjct: 55  VFVCLEAENGNFFAVKNTRGVSGFVTYGAAYQRVP----VELINQLKAERSHSHESQVPK 110

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G+ V V++  F + + I K  D +  R  + + +  +   + ++   + KI
Sbjct: 111 NGDLVSVNNESFKNIDAIYKEPDGD-MRSILFINLLNKQIEISVSNQAISKI 161


>gi|224087633|ref|XP_002308199.1| predicted protein [Populus trichocarpa]
 gi|222854175|gb|EEE91722.1| predicted protein [Populus trichocarpa]
          Length = 342

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 64/232 (27%)

Query: 3   PRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSERR 59
           P+W+IV+V      E      +  RL       +  ++  PS +    ++ G      + 
Sbjct: 109 PQWWIVRVSRIRGDETS---DVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKPKP 165

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111
            FPG V +  V+  +++  +++   V GF+G            P PV+D ++E +  Q +
Sbjct: 166 IFPGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAVFQQAK 225

Query: 112 AAVQRPVSSVFFE----------------------------------------------- 124
              ++       E                                               
Sbjct: 226 EEQEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSRKKGD 285

Query: 125 ---VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
               G  V V  G FA F G +K ++ +  +  V V +FG+ + VEL  +++
Sbjct: 286 LPKTGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337


>gi|317487904|ref|ZP_07946496.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
 gi|316913030|gb|EFV34547.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA]
          Length = 171

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y++QV    E     ++  R+       LV +    S R++   +G         FPGY+
Sbjct: 7   YVLQVVPGRE----RAMAERVKALAGPELVRDCFALSYRILKKNQGVWRLLTETMFPGYL 62

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            + +   +    TIK +      LG       +   E   + +    +     S    + 
Sbjct: 63  FVASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDN 122

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           G  + + +GP       +K +D  K   ++++ +  +   V +    V K
Sbjct: 123 GRTI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 170


>gi|325110731|ref|YP_004271799.1| NGN domain-containing protein [Planctomyces brasiliensis DSM 5305]
 gi|324970999|gb|ADY61777.1| NGN domain-containing protein [Planctomyces brasiliensis DSM 5305]
          Length = 190

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 45/173 (26%), Gaps = 14/173 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY     S  EK  +  +  R         V+             KGR   S    F
Sbjct: 30  ELNWYAFYTTSRQEKAFMRKLIDR--------QVSFYCPIVANKNRSPKGRVRTSHLPLF 81

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             YV +      ++        +        E        E    +  +    +      
Sbjct: 82  SNYVFVFGDFESRI-----QAFETNCISRCLEVEDSAALHEQLKAIETLIQCGEPVTIES 136

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               G  V +  G      G V       +R+ V V +  +   VEL   +VE
Sbjct: 137 RLMPGVPVRIKSGSLKGLTGTVFQ-RRGTNRLLVGVQLLQQGASVELNDWEVE 188


>gi|108761995|ref|YP_632130.1| NusG-like protein [Myxococcus xanthus DK 1622]
 gi|4164406|emb|CAA09920.1| NusG-like protein [Myxococcus xanthus]
 gi|108465875|gb|ABF91060.1| NusG-like protein [Myxococcus xanthus DK 1622]
          Length = 168

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 16/172 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W  + V  N EK A   +              E  +P+         +   ++   FPGY
Sbjct: 11  WVALLVRVNHEKVAAAQL---------GKHGYEFFLPTYTPPKSSGVK---AKLPLFPGY 58

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +    +         P VI  LG    P  V   E+E I  +V  +        +  
Sbjct: 59  LFCRYQPLNPYRIV--RAPGVIRLLGGDAGPEAVPAQELEAIR-RVADSGVSSNPCDYLR 115

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VG+RV + +GP     G +    + + R  V V +  R   VE++  Q+E I
Sbjct: 116 VGQRVRIIEGPLTGLEGSLVT-SKSQLRFIVSVGLLQRSVSVEVSAEQLEPI 166


>gi|159184310|ref|NP_353481.2| transcription antitermination protein [Agrobacterium tumefaciens
           str. C58]
 gi|159139634|gb|AAK86266.2| transcription antitermination protein [Agrobacterium tumefaciens
           str. C58]
          Length = 188

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 20/183 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS--VRKGRKVNSERRF 60
             W++V+     EK   +++              ++ +P E +    VR        R  
Sbjct: 13  HEWFVVETKHKAEKAVEDALRKA---------GVKVFLPLETIGETVVRGRIIPAVSRPL 63

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119
            PGYVL+  V +      I     V GF+G   +P  V+D E+       +         
Sbjct: 64  LPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMVHPHRVSDEEMNRFKAFGDDETAPDVKH 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK----SRV----HVEVVIFGRVTPVELAYN 171
              F+ G++V    GPFASF G +  + +++     RV     V V +FG+V+ +E    
Sbjct: 124 CEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAPLA 183

Query: 172 QVE 174
            +E
Sbjct: 184 LLE 186


>gi|226943708|ref|YP_002798781.1| transcriptional activator RfaH [Azotobacter vinelandii DJ]
 gi|226718635|gb|ACO77806.1| transcriptional activator RfaH [Azotobacter vinelandii DJ]
          Length = 153

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 9   QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
           Q     +++A +++              E   P      +  G         FPGY+ I+
Sbjct: 2   QCKPRQDERAEDNLKR---------QGYEYFRPQCLRERLMHGALRVQSESLFPGYLFIR 52

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128
               D  +  ++ T  V   +  G+ P  V+D  +  +  ++E++ +        + G+R
Sbjct: 53  LA-ADANWAPLRSTRGVSRLVSFGDMPLSVSDELVAELQRRIESSPE-----PALKPGDR 106

Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           V +  G F   + I   +D E  RV + + +  R   + L    + K
Sbjct: 107 VRIIAGSFTELDAIFLALDGE-ERVTLLMRLLHREHRLSLPLADIRK 152


>gi|261886300|ref|ZP_06010339.1| transcription antitermination protein NusG [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 50

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           V+ G FA+FNG V+  D    ++ + V IFGR TPVE+ Y+QVEKIV
Sbjct: 4   VTKGRFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 50


>gi|94265144|ref|ZP_01288908.1| NGN [delta proteobacterium MLMS-1]
 gi|93454383|gb|EAT04684.1| NGN [delta proteobacterium MLMS-1]
          Length = 169

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 27/181 (14%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+++   + E          ++R    +    + +P  RVV     R+    R  FP
Sbjct: 1   MAWYVIRAKPHKE---------EMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ ++       +  I  T   IG L  GE+  PV D  IE +  + +        +  
Sbjct: 52  GYLFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQ 111

Query: 123 FE---VGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            E    G  V V+        G F SF G        K  V + + I  R     +  ++
Sbjct: 112 KEKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDR 163

Query: 173 V 173
           V
Sbjct: 164 V 164


>gi|329964369|ref|ZP_08301450.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328525418|gb|EGF52466.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 180

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +  V S  EKK  +    RL+  G++       +P +  +     R+   ER   P 
Sbjct: 16  QWLVAYVQSCLEKKTAQ----RLTAMGIE-----CYLPVQNEIHQWSDRRKKVERLVIPM 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
            + +     ++              L     P+ + + ++E     ++ + +   + S  
Sbjct: 67  MIFVHVSPQERPLPLTLQAVSRYMVLRGESTPAIIPEEQMERFRFMLDYSPEVVEICSTP 126

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V V  GP A   G +  ++  KS+V + + + G    V++    VEK
Sbjct: 127 LAQGDAVKVIKGPLAGLEGELVTLNG-KSKVAIRLDMLGCAH-VDMPIGFVEK 177


>gi|295132413|ref|YP_003583089.1| NusG antitermination factor [Zunongwangia profunda SM-A87]
 gi|294980428|gb|ADF50893.1| NusG antitermination factor [Zunongwangia profunda SM-A87]
          Length = 164

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 13/157 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      E K  + +           +  E+  P +  +     RK       F  Y
Sbjct: 3   WYVIYTKPKSEIKTAQRLEK---------IGVEVFCPVKNEIRQWSDRKKKFTVPLFTSY 53

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + ++    D+    + + P V  +L     P+ V D+EI+ I   V       +  +  +
Sbjct: 54  LFVRLEEKDRA--IVFEVPGVNNYLFWLGQPAIVRDNEIDIIKKWVNDDAVEDIQLMHLK 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            G+R+ +  G F     +V+ +   K R  + +   G
Sbjct: 112 AGDRLIIKKGAFKDREAVVQKI--GKRRCKLVLPTMG 146


>gi|168698398|ref|ZP_02730675.1| transcription antitermination protein nusG [Gemmata obscuriglobus
           UQM 2246]
          Length = 177

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 11/174 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW  ++  +  EK   E +               + +P    VS  K +   ++   FPG
Sbjct: 12  RWAALRTAARWEKAVTEQLAAA---------GVPVFLPLLTRVSRTKSKTQTAQLPVFPG 62

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV                  K+I  L    +P  + D      +  + A  Q     V+ 
Sbjct: 63  YVFCGEREYRDSTRVPPSCRKLIAQLLRAPDPDQLKD--ELRSVADLLANRQLLQERVYG 120

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
            +G+ V +  GP A   G +  +     RV +EV   G      +    +EK V
Sbjct: 121 VIGDTVRIVGGPLAGSLGTILRLKPGTRRVLIEVSFLGARMEATVEERLLEKAV 174


>gi|126662220|ref|ZP_01733219.1| putative transcriptional regulator [Flavobacteria bacterium BAL38]
 gi|126625599|gb|EAZ96288.1| putative transcriptional regulator [Flavobacteria bacterium BAL38]
          Length = 154

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY +      E+K  +          L  L      P          RK        P
Sbjct: 1   MNWYALYTKPRNEQKVAQ---------KLQALGIIAYCPLVLSSKQWSDRKKKVLVPLLP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
            YV ++    ++    +     V+ ++     P+ +  +EIE +  Q+++++      + 
Sbjct: 52  SYVFVQIE--EQNRKDVFQVGGVVQYVFWLGKPAIIKPNEIEALKQQLDSSIPVVHFEMT 109

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
            +   E + +++G F   + IV  +   K R+
Sbjct: 110 TWRSNETIQITEGVFKGQDAIVDKISTNKVRL 141


>gi|291544741|emb|CBL17850.1| Transcription antiterminator [Ruminococcus sp. 18P13]
          Length = 186

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y++Q     +  AV  +           L      P    +  R G    +E   FPGYV
Sbjct: 3   YVLQTKPGQDDNAVRDLER---------LGYRSYAPRRIALHRRGGTWWEAEYPVFPGYV 53

Query: 66  LI-KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
            +    +TD  YH I     VI FLG G  P P+ + E E+I            S V   
Sbjct: 54  FLDDLELTDVDYHRIMPCVGVIRFLGHGA-PEPLPEHEAEYIRWLHNGGKPIAPSEVRIR 112

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
               +    G  +S+ G V   +  + R  + + I G++  + LA   V+
Sbjct: 113 PDGSMQYVSGLISSYAGRV-EHNSRQRRATIRISIAGKLHRITLAVRYVQ 161


>gi|51247052|ref|YP_066935.1| related to transcriptional activators [Desulfotalea psychrophila
           LSv54]
 gi|50878089|emb|CAG37945.1| related to transcriptional activators [Desulfotalea psychrophila
           LSv54]
          Length = 193

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY ++  +  E          +++         + +P  R               FFPG
Sbjct: 28  HWYAIRTKNKKE---------EVAKFNYQRQGYTVYLPLLRKTVHHARSTTEKLVAFFPG 78

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE---AAVQRPVSS 120
           Y+ +     ++ +  I  T   +G L  G++   +    I  +  + +   + + + +  
Sbjct: 79  YLFLNLAPAEQNWTAIASTRGSLGALCFGDSYIEIPGWVISDLKAREDKGLSILAKDLIK 138

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
                G  V V+     S   +V ++   ++ V V + I  R     ++ ++++
Sbjct: 139 ENLTPGSVVTVNIPGLESVEAVVYSIRGSEN-VDVLLNILSRQVKTTVSLDRIK 191


>gi|94267031|ref|ZP_01290674.1| NGN [delta proteobacterium MLMS-1]
 gi|93452265|gb|EAT02911.1| NGN [delta proteobacterium MLMS-1]
          Length = 169

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 27/181 (14%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+++   + E           +R    +    + +P  RVV     R+    R  FP
Sbjct: 1   MAWYVIRAKPHKE---------ETARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ ++       +  I  T   IG L  GE+  PV D  IE +  + +        +  
Sbjct: 52  GYLFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQ 111

Query: 123 FE---VGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            E    G  V V+        G F SF G        K  V + + I  R     +  ++
Sbjct: 112 KEKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDR 163

Query: 173 V 173
           V
Sbjct: 164 V 164


>gi|312113215|ref|YP_004010811.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
 gi|311218344|gb|ADP69712.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100]
          Length = 172

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 11/166 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W ++  + + E  AVE++                  P          R  ++ R  FPG
Sbjct: 11  KWVVLTTHPHRENFAVENLAR---------QDFTAYCPMTVKHVRHARRAYDAPRPLFPG 61

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV ++     +    I  T  V   L  G++P+ +    IE +  +    V         
Sbjct: 62  YVFVEHQSAFQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAREMDGV-ISKPEAPL 120

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           + G+ V +S GPF    G +     E+ RV + + +  + T V++ 
Sbjct: 121 KAGQTVTISGGPFDGLVGQILEF-RERDRVLLLLDLLNQQTRVQVE 165


>gi|325833254|ref|ZP_08165760.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
 gi|325485636|gb|EGC88104.1| transcription termination/antitermination factor NusG [Eggerthella
           sp. HGA1]
          Length = 164

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 6/168 (3%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           +QV    E+   E    R+       LV +    S  ++   +G         FPGY+ +
Sbjct: 2   LQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLLTETMFPGYLFV 57

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
            +   +    TIK +      LG       +   E   + +    +     S    + G 
Sbjct: 58  ASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDNGR 117

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            + + +GP       +K +D  K   ++++ +  +   V +    V K
Sbjct: 118 TI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 163


>gi|160882085|ref|ZP_02063088.1| hypothetical protein BACOVA_00023 [Bacteroides ovatus ATCC 8483]
 gi|156112520|gb|EDO14265.1| hypothetical protein BACOVA_00023 [Bacteroides ovatus ATCC 8483]
          Length = 152

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + RWY+  V  + EKK  E    RL + G+++      +P ++ V     R+   E    
Sbjct: 23  SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120
           P  V + A   ++       T      +    +P+ + D ++      ++ + +     S
Sbjct: 74  PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133

Query: 121 VFFEVGERVCVSDGPFASF 139
                GE+V V  GP    
Sbjct: 134 APLARGEKVRVIKGPLTDL 152


>gi|115456311|ref|NP_001051756.1| Os03g0825500 [Oryza sativa Japonica Group]
 gi|15042831|gb|AAK82454.1|AC091247_21 putative transcription factor [Oryza sativa Japonica Group]
 gi|108711839|gb|ABF99634.1| KOW motif family protein, expressed [Oryza sativa Japonica Group]
 gi|108711840|gb|ABF99635.1| KOW motif family protein, expressed [Oryza sativa Japonica Group]
 gi|113550227|dbj|BAF13670.1| Os03g0825500 [Oryza sativa Japonica Group]
 gi|125546265|gb|EAY92404.1| hypothetical protein OsI_14139 [Oryza sativa Indica Group]
          Length = 330

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 53/226 (23%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
           P+W++V+V        V+ +   +SR     L  +I  PS +V    + G      +   
Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRR-YPELSFKIYNPSIQVKKRLKNGSISTKSKPLH 162

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG----------------------------- 92
           PG V +   +  +V+  I+DT    GF+G                               
Sbjct: 163 PGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEEVESIIREEKEE 222

Query: 93  -----------------ENPSPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVC 130
                            E+ +   +     +MN+++   ++P+S        F  G  V 
Sbjct: 223 QERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVH 282

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  GPF  F G +  V+ +  +  +++ +FG+ + V+L ++Q+E +
Sbjct: 283 VLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 328


>gi|221134306|ref|ZP_03560611.1| transcriptional activator RfaH [Glaciecola sp. HTCC2999]
          Length = 176

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 13/171 (7%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++   +  E +AV           L +   +   P   +  V +G++   E   FP Y
Sbjct: 17  WYLLYCKAKEEGRAV---------MHLANQGIDAFYPKANITKVLRGKRQTVEEALFPNY 67

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V  +       + +++ T  VIGF+  G++   V+ + I+     V+      + S    
Sbjct: 68  VFAQLDHDVHNFTSVRSTRGVIGFVKQGKDYQKVSQALID---VFVQCDTVDKLDSALPT 124

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+ V +    + +   I +    E  R  + + +  +   + +  +Q  K
Sbjct: 125 KGDNVMLQHPQYQNIPAIYQEPKGEN-RAILLIHLLNKPVELVVDNSQFTK 174


>gi|168031471|ref|XP_001768244.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680422|gb|EDQ66858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 719

 Score = 64.3 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 44/206 (21%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRS--GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           WY+V      E +A E +  + ++   G+ + V   +IPS     ++ GR  +S  R +P
Sbjct: 119 WYMVSTPKKAEHEAAEQLHIQFAQMFPGMKYEVLTPSIPS--FRKLKSGRYSDSRVRLYP 176

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS---------EIEHIMNQVEAA 113
           G +LI+ VM   VY+ I+   ++  F GT    + V+D          EIE +  ++E A
Sbjct: 177 GCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEA 236

Query: 114 VQR-------------------------------PVSSVFFEVGERVCVSDGPFASFNGI 142
                                             P      E G  + ++ GPF +  GI
Sbjct: 237 EAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGI 296

Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVEL 168
           V  VD E   V + VVIFG+ T  EL
Sbjct: 297 VNYVDHENETVQLSVVIFGQSTDAEL 322


>gi|170744011|ref|YP_001772666.1| NusG antitermination factor [Methylobacterium sp. 4-46]
 gi|168198285|gb|ACA20232.1| NusG antitermination factor [Methylobacterium sp. 4-46]
          Length = 225

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 11/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W + +       + V  +    +  GL        +        R+              
Sbjct: 52  WLVARTRPRWAPRVVRDL----AALGLCAFEAREEVERVGPDGARRR----VAVPLLHRL 103

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI---EHIMNQVEAAVQRPVSSV 121
           V +       +         +      G   +          + +  +        V +V
Sbjct: 104 VFLGLRDDADLARAEAHPGVLRVLFREGRAVTIPAPILQAFADALAGRAGEGEDEAVEAV 163

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
              +G+ V V+ GP A+  G ++ VD  + R  V + +FGR T V+LA  +V
Sbjct: 164 LLALGDAVRVTRGPLAALRGTIEAVDPARRRYRVALGLFGRATRVDLAAEEV 215


>gi|313202886|ref|YP_004041543.1| nusg antitermination factor [Paludibacter propionicigenes WB4]
 gi|312442202|gb|ADQ78558.1| NusG antitermination factor [Paludibacter propionicigenes WB4]
          Length = 158

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++   S  EK        RL   G++  +     P          R    E   F 
Sbjct: 1   MNWYLLYTASRAEKLV----EQRLKAEGVETYLPLHLSP-----RRWSDRVALVELPLFS 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ ++   TD++   +     V+  +     P+ +  +EI+ I   +E A  +  +   
Sbjct: 52  SYIFVRT--TDEILRGLVRVNGVLRIIFYNARPAIIKPTEIDSIKLFIEKAKGKICT--- 106

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQVEKI 176
           F + + V ++ GP  + +G V  V +E   + +  + IF     V +  NQV KI
Sbjct: 107 FGLNDEVQIACGPLKNIDGTVTKVGKEYIILQIAQIGIF-----VSVKLNQVVKI 156


>gi|311747951|ref|ZP_07721736.1| NusG antitermination factor [Algoriphagus sp. PR1]
 gi|126574924|gb|EAZ79282.1| NusG antitermination factor [Algoriphagus sp. PR1]
          Length = 170

 Score = 63.9 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 11/144 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +W+++   S  EKK  + +              E+ +P    +     RK   E+  F
Sbjct: 3   ELKWFVMYTASRSEKKVAKRLRENGK---------EVYLPIIEEIRQWSDRKKKVEKPLF 53

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GYV +K              P  + F+      + V D E+E I   +   V       
Sbjct: 54  NGYVFVKTTRNQL--WECLQVPGAVKFVHFSGQHATVRDEELETIERIISTGVAVESDGS 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKN 145
             E GE+V V  G      G V  
Sbjct: 112 VIEAGEKVEVIGGALQHMTGEVIE 135


>gi|325103553|ref|YP_004273207.1| NGN domain-containing protein [Pedobacter saltans DSM 12145]
 gi|324972401|gb|ADY51385.1| NGN domain-containing protein [Pedobacter saltans DSM 12145]
          Length = 180

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           + +W+++   +  EKK    +              +   P ++V S    R    E   F
Sbjct: 18  SKQWFVIYTRTRWEKKVDTLLKQ---------KGIDSYCPLKKVRSKWADRIKTVELPLF 68

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             YV +     +++   ++ T  VI F+     P+ V + EIE I + +    +  VSS+
Sbjct: 69  TSYVFVNINYKEEL--KVRQTHGVINFIYYMGKPAVVRNQEIEEIQDILVKNREIEVSSI 126

Query: 122 -FFEVGERVCVSDGPFASFNGIVKNV 146
               +G+RV + +G   +  G +  V
Sbjct: 127 RDLNIGDRVLIKNGALFNQEGNIVQV 152


>gi|295116148|emb|CBL36995.1| Transcription antiterminator [butyrate-producing bacterium SM4/1]
          Length = 201

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 28/184 (15%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  +  E    E I   +     + L     +          G+    ++  FPGY
Sbjct: 2   WYVIQTETGKE----EEILLFMRNMIPEELCRHCFLIWAEWPRRAGGQWNIVKKNMFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +    ++++  +K  P +   LG          +E E     +              
Sbjct: 58  IFAETEEPEELFQRLKKVPGLTKLLGGDRCEFIPLGAEEERFFCMIGEKEGNCTGENRAA 117

Query: 125 VG------------------------ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
            G                         ++ + +G   SF   +  V+  K    V V + 
Sbjct: 118 KGRAGTNKRKWDCLSVRPSTVRVDEEGKLEILNGALRSFKEEIVRVNLHKRYAVVRVRML 177

Query: 161 GRVT 164
           G  T
Sbjct: 178 GEKT 181


>gi|116625224|ref|YP_827380.1| NusG antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228386|gb|ABJ87095.1| NusG antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 193

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+ + V              +L    L+H   E   P +     R+ +  + +   FPG
Sbjct: 18  QWFALSVTPK---------LTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPG 68

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV  +  +  ++   +  TP V G +G G  P+PV D EI   + +V  +     S+ + 
Sbjct: 69  YVFARIDVRFRLPVLV--TPGVRGIVGYGRQPAPVDDGEIFA-LRRVMQSQLPAKSAPYL 125

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             G+RV + +GP +   G++        RV V+V +  +   V++    V 
Sbjct: 126 RTGDRVQLVEGPLSGLTGLLIQQKGAN-RVLVQVTLINQALAVDVESAWVR 175


>gi|154492599|ref|ZP_02032225.1| hypothetical protein PARMER_02233 [Parabacteroides merdae ATCC
           43184]
 gi|154087824|gb|EDN86869.1| hypothetical protein PARMER_02233 [Parabacteroides merdae ATCC
           43184]
          Length = 180

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 28/179 (15%)

Query: 1   MTPR----------WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
           M  +          WY++      EK+       R++  G++       +P  R   V  
Sbjct: 11  MEKKELKINADKTSWYVLYTAPRAEKQV----RDRINALGVE-----CWLPLHRAPRVWS 61

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
            R    E   F  Y+ ++   TD     +     V   +     P+ V   EI+ I + +
Sbjct: 62  DRVKIVELPLFNSYLFVRC--TDPELRNLTRVYGVARIVYYNGKPAVVRQKEIDAIQDFL 119

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           + A +  +       GE V +  G     +G VK +   K+ + + +   G    V+L 
Sbjct: 120 DQASEHALC-----PGEEVEILCGAMKHVSGKVKKIK--KNHLVLYLEQLGATVCVKLD 171


>gi|237722567|ref|ZP_04553048.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448377|gb|EEO54168.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 165

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 14  CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
            EKK  E    RLS+ G+D       +P ++ +     R+   +    P  V +     +
Sbjct: 3   HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53

Query: 74  KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132
           ++      T      +     P+ + D ++      ++ + +           GE+V V 
Sbjct: 54  RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVI 113

Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            GP +   G +  V   KS++ V + + G
Sbjct: 114 KGPLSGLVGELVTV-GGKSKIAVRLNMLG 141


>gi|29346768|ref|NP_810271.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572224|ref|ZP_04849627.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338665|gb|AAO76465.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837999|gb|EES66087.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 190

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW +  V  + EKK  E    RLS+ G+++      +P ++ V     R+   ER   P
Sbjct: 25  KRWLVALVRISHEKKTSE----RLSKMGIEN-----FLPVQQEVHQWSDRRKVVERVLLP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
             + +   M ++       +      L     P+ + D ++      ++ + +    S  
Sbjct: 76  MMIFVHVDMYEQKEVLTLGSISRYMVLRGESTPAVIPDEQMHRFKFMLDYSDEAINMSTT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               G ++ V  GP +   G +  V+  KS+V V + + G    V++    VE +
Sbjct: 136 PLSPGTKIKVIKGPLSGLQGELVTVNG-KSKVAVRLTMLGCAF-VDIPVGCVEPL 188


>gi|325279693|ref|YP_004252235.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
 gi|324311502|gb|ADY32055.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712]
          Length = 207

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 16/174 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V   +  EKK  E    RL + G+++      +P      V   RK         GY
Sbjct: 29  WYAVYTAARAEKKVKE----RLDQIGIENY-----LPLRTEYRVWSDRKKKVSVPLISGY 79

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +     ++ +  +  TP V+ FL        +  +E    +  VE     P+   + +
Sbjct: 80  IFVHIK--EETFVPVLTTPGVVTFLKEKGKAVAI-PAEQIERLRFVENQADEPLEISYED 136

Query: 125 V--GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +  G  V V  G  A F G +  +  +K R+ + +   G    + +A + VEK+
Sbjct: 137 IPAGTLVEVVRGKLAGFQGEMVQI-RDKYRIVLRLEKLGCA-LITVAASCVEKV 188


>gi|169350049|ref|ZP_02866987.1| hypothetical protein CLOSPI_00789 [Clostridium spiroforme DSM 1552]
 gi|169293262|gb|EDS75395.1| hypothetical protein CLOSPI_00789 [Clostridium spiroforme DSM 1552]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 13/169 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++   S  + + V ++  R           E  +P       +    +      F 
Sbjct: 1   MNWYVLNTLSYKKNQVVFNLNKR--------KCIEAFVPQYEYYHRKTKEYLIK--PMFT 50

Query: 63  GYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           GYV +K  +    ++         K           +     E   +   +  A      
Sbjct: 51  GYVFVKTELNQLEFNSLLYKMAEEKNGVIGQLVNKETLALRKEEIRMFELLLDAYHVVRM 110

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
           S  +    +  + +GP  SF   +  VD      ++++    R   V L
Sbjct: 111 SQAYLQDGKAVIIEGPLKSFENNIVKVDRHNQYAYLDLSFMDRRIKVGL 159


>gi|218260979|ref|ZP_03476006.1| hypothetical protein PRABACTJOHN_01670 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224271|gb|EEC96921.1| hypothetical protein PRABACTJOHN_01670 [Parabacteroides johnsonii
           DSM 18315]
          Length = 180

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 28/179 (15%)

Query: 1   MTPR----------WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
           M  +          WY++      EK+  + I         D L  E  +P  R   V  
Sbjct: 11  MEKKELKRNADKTSWYVLYTAPRAEKQVRDRI---------DALGIECWLPLHRTPRVWS 61

Query: 51  GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
            R    E   F  Y+ ++   TD     +     V   +     P+ V   EI+ I   +
Sbjct: 62  DRVKIVELPLFNSYLFVRC--TDPELRNLIRVYGVARIVYYNGKPAVVRQKEIDAIQEFL 119

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           + A +  +       GE V +  G     +G VK +   K+ + + +   G    V+L 
Sbjct: 120 DQASEHALC-----PGEEVEILCGAMKHVSGKVKKIK--KNHLVLYLEQLGATVCVKLD 171


>gi|149277513|ref|ZP_01883654.1| hypothetical protein PBAL39_04978 [Pedobacter sp. BAL39]
 gi|149231746|gb|EDM37124.1| hypothetical protein PBAL39_04978 [Pedobacter sp. BAL39]
          Length = 170

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +WY V   S  EKKA          S L        +P +R +     RK   E     
Sbjct: 9   KKWYPVCTQSRAEKKA---------YSELTRKNITSYLPLQRQMKQWSDRKKWVEEPLIR 59

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            Y+ +      +    +  T  +  F+    + + + + +IE +     +  +  ++   
Sbjct: 60  SYLFVHISRQQQAEVLM--TSGIARFIYFSGHIASMPEQQIEQLKLLTASPYELEITENN 117

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
              GE++ +  GP    +G V      + ++ V +        V +  +
Sbjct: 118 LLEGEKITIKAGPLQGMSGEVVAY-RSQKKLLVRMTELNHAILVHIPAS 165


>gi|237718366|ref|ZP_04548847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452299|gb|EEO58090.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 14  CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
            EKK  E    RLS+ G+D       +P ++ +     R+   +    P  V +     +
Sbjct: 3   HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53

Query: 74  KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132
           ++      T      +     P+ + D ++      ++ + +           GE+V V 
Sbjct: 54  RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLAHGEKVRVI 113

Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            GP +   G +  V   KS++ V + + G
Sbjct: 114 KGPLSGLVGELVTV-GGKSKIAVRLNMLG 141


>gi|293372803|ref|ZP_06619183.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|292632228|gb|EFF50826.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 14  CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
            EKK  E    RLS+ G+D       +P ++ +     R+   +    P  V +     +
Sbjct: 3   HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53

Query: 74  KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132
           ++      T      +     P+ + D ++      ++ + +           GE+V V 
Sbjct: 54  RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVI 113

Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            GP +   G +  V   KS++ V + + G
Sbjct: 114 KGPLSGLVGELVTV-GGKSKIAVRLNMLG 141


>gi|297200225|ref|ZP_06917622.1| transcription antitermination protein [Streptomyces sviceus ATCC
           29083]
 gi|197713321|gb|EDY57355.1| transcription antitermination protein [Streptomyces sviceus ATCC
           29083]
          Length = 158

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           + +    VG  V ++DGPFA+    V  +D    +V   + +FGR  PVEL++ 
Sbjct: 1   MPAPDIAVGASVTITDGPFATLRATVTEIDTPSQKVKGVIELFGRHAPVELSFT 54


>gi|293370096|ref|ZP_06616661.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|292634824|gb|EFF53348.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
          Length = 159

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 14  CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
            EKK  E    RL + G+++      +P ++ +     R+   E    P  V +     +
Sbjct: 3   HEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLLPMMVFVHVNPKE 53

Query: 74  KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132
           +       T      +    +P+ + D ++      ++ + +     S     GE+V V 
Sbjct: 54  RKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVV 113

Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            GP     G + NVD  KS++ V + + G
Sbjct: 114 KGPLTGLVGELVNVDG-KSKIAVRLNMLG 141


>gi|313639750|gb|EFS04503.1| transcription antitermination protein NusG [Listeria seeligeri
          FSL S4-171]
          Length = 47

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46
          M   WY+V  YS  E K   ++  R+   G+   +  + +P E  +
Sbjct: 1  MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEEM 46


>gi|218130761|ref|ZP_03459565.1| hypothetical protein BACEGG_02352 [Bacteroides eggerthii DSM 20697]
 gi|217987105|gb|EEC53436.1| hypothetical protein BACEGG_02352 [Bacteroides eggerthii DSM 20697]
          Length = 187

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +  V S  EK+       RL+  G++       +P +  +     R+   +R   P 
Sbjct: 17  QWLVAYVQSCLEKRTAR----RLAAMGIE-----CYLPIQSEIHQWSDRRKRVDRLIIPM 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
            + +     ++              L     P+ + D ++      ++ + +   + S  
Sbjct: 68  MIFVHVTPQERALPLSLQAVNRYMVLRGESAPAVIPDEQMAQFRFMLDYSQEAVEMCSAP 127

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V V  GP A   G +  ++  KS+V V +   G    V++    VEK
Sbjct: 128 LAPGDAVKVIKGPLAGLEGELVILNG-KSKVAVRLDKLGYAH-VDMPVGFVEK 178


>gi|150004924|ref|YP_001299668.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|254884346|ref|ZP_05257056.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775805|ref|ZP_06741307.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
 gi|319642114|ref|ZP_07996778.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
 gi|149933348|gb|ABR40046.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|254837139|gb|EET17448.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450391|gb|EFG18889.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
 gi|317386250|gb|EFV67165.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
          Length = 216

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY+  V +  EK   + +  RL          E+ +P ++ +S+R   ++   +R  F
Sbjct: 27  KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 86

Query: 62  PGYVLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPV----TDSEIEHIMNQVEAAV 114
           P  V I+   +    ++         ++   G+  N         D ++  +M  V  A 
Sbjct: 87  PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 146

Query: 115 QRPVSS-VFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           +          +G+RV V+ G      G + + +D   S + V++ I G    V +A   
Sbjct: 147 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILGCA-KVTIAREL 204

Query: 173 VEKI 176
           +E I
Sbjct: 205 LEPI 208


>gi|291279733|ref|YP_003496568.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1]
 gi|290754435|dbj|BAI80812.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 11/174 (6%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   W  V      E K          +  L+    E   P  +      G+     +  
Sbjct: 1   MKYYWRCVYCKPR-EAKVA--------KFYLEKGGFETFYPLIKEKKRVAGKIKEIHKEL 51

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++  + D     +K T  V   +        V D EI   +          +  
Sbjct: 52  FPNYLFVRFSVEDYRT--VKYTKGVSRVVLGDNGEPAVVDDEIIEAIKGRMQDGFVVLEE 109

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             F+ GE+V + DGPF  F  +     + + RV + +        +E+ Y++++
Sbjct: 110 KGFKKGEKVLIKDGPFKGFEAVFLKEIKPRDRVLILLKTITGELKLEIDYDKLK 163


>gi|295085179|emb|CBK66702.1| Transcription termination factor nusG. [Bacteroides xylanisolvens
           XB1A]
          Length = 159

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 14  CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73
            EKK  E    RL + G+++      +P ++ +     R+   E    P  V +     +
Sbjct: 3   HEKKVAE----RLDKIGIEN-----FVPVQQEIHQWSDRRKMVESVLLPMMVFVHVNPKE 53

Query: 74  KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132
           +       T      +    +P+ + D ++      ++ + +     S     GE+V V 
Sbjct: 54  RKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVV 113

Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            GP     G + NVD  KS++ V + + G
Sbjct: 114 KGPLTGLVGELVNVDG-KSKIAVRLNMLG 141


>gi|257458184|ref|ZP_05623338.1| transcription antitermination protein NusG [Treponema vincentii
          ATCC 35580]
 gi|257444478|gb|EEV19567.1| transcription antitermination protein NusG [Treponema vincentii
          ATCC 35580]
          Length = 131

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERR 59
          M   WYI+ ++S  EK+   +I   +    +   +++EI IP E +  V+ G+K    R+
Sbjct: 1  MAKEWYILHIFSGYEKRIERAIRLLIENGEIPAGVISEIKIPEEELTEVKDGKKRVVRRK 60

Query: 60 FFPGYVLIKAVMTDKVY 76
          F PGY+LI+  +    +
Sbjct: 61 FLPGYILIEMDLPAVNW 77


>gi|237710185|ref|ZP_04540666.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727683|ref|ZP_04558164.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750988|ref|ZP_06087051.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229434539|gb|EEO44616.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455647|gb|EEO61368.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237884|gb|EEZ23334.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 216

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY+  V +  EK   + +  RL          E+ +P ++ +S+R   ++   +R  F
Sbjct: 27  KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 86

Query: 62  PGYVLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPV----TDSEIEHIMNQVEAAV 114
           P  V I+   +    ++         ++   G+  N         D ++  +M  V  A 
Sbjct: 87  PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 146

Query: 115 QRPVSS-VFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           +          +G+RV V+ G      G + + +D   S + V++ I G    V +A   
Sbjct: 147 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILGCA-KVTIAREL 204

Query: 173 VEKI 176
           +E I
Sbjct: 205 LEPI 208


>gi|332181380|gb|AEE17068.1| hypothetical protein Trebr_1645 [Treponema brennaborense DSM 12168]
          Length = 175

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 5/171 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y + V +  E+K  +S+   +   G + ++       ++ + ++ GR+      FFPGYV
Sbjct: 4   YCISVRTGMEEKFRQSVLTFVE--GDERVLCGRLHILKKRMRLKSGREY--FESFFPGYV 59

Query: 66  LIKAVMTDKVYHTIKDTPK-VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
            ++   +D          K  + FL +     P+  S+ E +   ++      +  V F+
Sbjct: 60  FLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIVPVTFD 119

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+R+ + + PF  F+G V  V+    R+++E+     V  V L Y +V K
Sbjct: 120 KGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170


>gi|298386585|ref|ZP_06996141.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298260962|gb|EFI03830.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 190

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 12/175 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RW +  V  + EKK  E    RLS+ G+++      +P ++ V     R+   ER   P
Sbjct: 25  KRWLVALVRISHEKKTSE----RLSKMGIEN-----FLPVQQEVHQWSDRRKVVERVLLP 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
             + +   + ++       +      L     P+ + D ++      ++ + +    S  
Sbjct: 76  MMIFVHVDIYEQKEVLTLGSISRYMVLRGESTPAVIPDEQMHRFKFMLDYSDEAINMSTT 135

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               G ++ V  GP +   G +  V+  KS+V V + + G    V++    VE +
Sbjct: 136 PLSPGTKIKVIKGPLSGLQGELVTVNG-KSKVAVRLTMLGCAF-VDIPVGCVEPL 188


>gi|212694317|ref|ZP_03302445.1| hypothetical protein BACDOR_03843 [Bacteroides dorei DSM 17855]
 gi|212662818|gb|EEB23392.1| hypothetical protein BACDOR_03843 [Bacteroides dorei DSM 17855]
          Length = 226

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61
             WY+  V +  EK   + +  RL          E+ +P ++ +S+R   ++   +R  F
Sbjct: 37  KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 96

Query: 62  PGYVLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPV----TDSEIEHIMNQVEAAV 114
           P  V I+   +    ++         ++   G+  N         D ++  +M  V  A 
Sbjct: 97  PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 156

Query: 115 QRPVSS-VFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           +          +G+RV V+ G      G + + +D   S + V++ I G    V +A   
Sbjct: 157 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILGCA-KVTIAREL 214

Query: 173 VEKI 176
           +E I
Sbjct: 215 LEPI 218


>gi|284037545|ref|YP_003387475.1| NusG antitermination factor [Spirosoma linguale DSM 74]
 gi|283816838|gb|ADB38676.1| NusG antitermination factor [Spirosoma linguale DSM 74]
          Length = 161

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++      EK   + +              E+  P  R       R    E   FP Y
Sbjct: 3   WYVLCTKPRKEKFLAKLLAE---------KQIEVYCPLIRRKRRWSDRIKTVEEPLFPCY 53

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
             +    +++    +  TP ++ +L     P+ V D EI+ I   +       +    F 
Sbjct: 54  CFVNVKESERADVFV--TPGIVRYLYWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESFN 111

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
             ++V ++ G F    G V      +  + V + +
Sbjct: 112 PKDKVVINSGSFMGQGGTVV----NQQGIKVLIHL 142


>gi|325298353|ref|YP_004258270.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
 gi|324317906|gb|ADY35797.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
          Length = 500

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V+   + E K VE +  + ++      + EI  P+   V+V +      ++  F G
Sbjct: 11  RWYVVRTKRHQESKLVELLEKQKAQ---TKNILEIYAPTHTTVNVHQDSDD-KQKPLFAG 66

Query: 64  YVLIKAVMTDKVYHTIK-----------------DTPKVIGFLGTGENPSPVTDSEIEHI 106
            V + A     +    +                  T   +             ++  + +
Sbjct: 67  IVFVLATQDALMNFMKEHSLDAGMQYERKNEKGERTRMCVIPESQMRAFRDYNENYADKV 126

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
           +           ++   E  E V V DGP A   G +     EK  V
Sbjct: 127 IVLEHPYSDYAFNTKTGEPNEIVRVIDGPLAGCEGYICRFRHEKRLV 173


>gi|325298850|ref|YP_004258767.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
 gi|324318403|gb|ADY36294.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
          Length = 519

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWYIV+     E+K  E +    ++S     + E+  P+   V++R       +   F G
Sbjct: 11  RWYIVRTRPRQERKLAELLEQYKAKSV---NILEVYAPTHTTVNIRH-EGSERQAPLFVG 66

Query: 64  YVLIKAV---MTDKVYHTIKD-TPKVIGFLGTGEN-------------PSPVTDSEIEHI 106
            + + A    +TD +     +   +     G GE                   ++  + +
Sbjct: 67  TIFVLATQKALTDFMEEHSLNGILQYERKNGKGEKTRLRVIPEEQMRAFRDYNENYADRV 126

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
           +           ++   E  E V V DGP A   G +     +K  V
Sbjct: 127 IVLERPYTDYAFNAKSDEPNEIVRVIDGPLAGRKGYICRFRRDKRLV 173


>gi|332181956|gb|AEE17644.1| hypothetical protein Trebr_2235 [Treponema brennaborense DSM 12168]
          Length = 175

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 5/171 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y + V +  E+K  +S+   +   G + ++       ++ + ++ GR+      FFPGYV
Sbjct: 4   YCISVRTGMEEKFRQSVLTFVE--GDERVLCGRLHILKKRMRLKSGREY--FESFFPGYV 59

Query: 66  LIKAVMTDKVYHTIKDTPK-VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
            ++   +D          K  + FL +     P+  S+ E +   ++      +  V F+
Sbjct: 60  FLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIVPVTFD 119

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G+R+ + + PF  F+G V  V+    R+++E+     V  V L Y +V K
Sbjct: 120 KGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170


>gi|317474286|ref|ZP_07933562.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909596|gb|EFV31274.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 187

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 12/173 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +  V S  EK+       RL+  G++       +P +  +     R+   +R   P 
Sbjct: 17  QWLVAYVQSCLEKRTAR----RLAAMGIE-----CYLPIQSEIHQWSDRRKRVDRLIIPM 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122
            + +     ++              L     P+ + D ++      ++ + +   + S  
Sbjct: 68  MIFVHVTPQERALPLSLQAVNRYMVLRGESAPAVIPDEQMAQFRFMLDYSQEAVEMCSAP 127

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G+ V V  GP     G +  ++  KS+V V +   G    V++    VEK
Sbjct: 128 LAPGDAVKVIKGPLTGLEGELVILNG-KSKVAVRLDKLGYAH-VDMPVGFVEK 178


>gi|326487792|dbj|BAK05568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 333

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G  V V  GPFA F G +  V  +  +V V++ +FG+ + V+L ++Q+E +
Sbjct: 281 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 331


>gi|169837422|ref|ZP_02870610.1| transcription antitermination protein NusG [candidate division
          TM7 single-cell isolate TM7a]
          Length = 91

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
            +WYI+  YS  EKK    +  R+    L        + +        G   N+  +  
Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDRAFLELL-AAFFNKSDAGGVFNTNVKLL 73

Query: 62 PGYVLIKAVMTDKVYHTI 79
            Y +I   +T+ +   +
Sbjct: 74 SAYTVISTGITNPILSCV 91


>gi|125588461|gb|EAZ29125.1| hypothetical protein OsJ_13188 [Oryza sativa Japonica Group]
          Length = 390

 Score = 60.8 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIV 143
            G  E+ +   +     +MN+++   ++P+S        F  G  V V  GPF  F G +
Sbjct: 296 GGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSL 355

Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             V+ +  +  +++ +FG+ + V+L ++Q+E +
Sbjct: 356 LEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 388



 Score = 40.4 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIV 143
            G  E+ +   +     +MN+++   ++P+S        F  G  V V  GPF  F G +
Sbjct: 169 GGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSL 228

Query: 144 KNVDEEKSRVHVEV 157
             V+ +  +V + +
Sbjct: 229 LEVNRKNKKVRLMI 242


>gi|283798124|ref|ZP_06347277.1| putative transcription termination factor NusG [Clostridium sp.
           M62/1]
 gi|291074102|gb|EFE11466.1| putative transcription termination factor NusG [Clostridium sp.
           M62/1]
 gi|295091729|emb|CBK77836.1| Transcription antiterminator [Clostridium cf. saccharolyticum K10]
          Length = 176

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FF 61
             WY++      E + +ES+  RL +      ++E  +     +    G      R+  F
Sbjct: 1   MSWYVLYCRPGQETEIIESLKQRLPK----DALSEAFLFQCERLWRAGGGNWKLIRKEMF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV +++  ++ +   ++    ++  +       PV   E E +           +S  
Sbjct: 57  PGYVFLESEDSEYLSEKLEAYRGIVRVMEEPGYLIPVYREEEERLRRLCGPEHILRLSYG 116

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
           + E G    V +GP       +   D  +    +E  + G+ T
Sbjct: 117 YRENGVNH-VVEGPLKGMERQIVKADWHRRFAQIETAVGGKRT 158


>gi|26554337|ref|NP_758271.1| transcription antitermination factor [Mycoplasma penetrans HF-2]
 gi|26454346|dbj|BAC44675.1| transcription antitermination factor [Mycoplasma penetrans HF-2]
          Length = 348

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           F VG  V +       + G+++++D EK +  V V I G+ T V++ ++++ K
Sbjct: 294 FAVGNTVEILVESMQGYEGVIESIDLEKDKAKVLVDILGKETIVDVHFSEIRK 346



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 31/159 (19%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV------------- 48
             +WYIV   +  E    ++I  ++    L ++V E+ +   R +++             
Sbjct: 17  EAKWYIVTSINGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPINNPPPSR 76

Query: 49  ---------------RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
                          R  +    E   FPGY+ IK +M D  ++ I++T  V GF+G+  
Sbjct: 77  FRNTKSITWETLPGGRYKKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVGSSG 136

Query: 94  ---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129
               P P++D E+ ++ N           +    V + V
Sbjct: 137 KGAKPIPMSDIEVANLFNPEMNQDIIINKTSDVFVEQTV 175


>gi|283797664|ref|ZP_06346817.1| putative transcription termination factor NusG [Clostridium sp.
           M62/1]
 gi|291074670|gb|EFE12034.1| putative transcription termination factor NusG [Clostridium sp.
           M62/1]
          Length = 176

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 8/163 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  +  E++    +   +S +      +        ++    GR        FP Y
Sbjct: 2   WYVIQTTTGKEEELAGIVRRNVSHALYGSCFSM----KRELLKRLGGRWTAVTETMFPSY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----SS 120
           V ++    +++++ +K  P+    LG  E      + E E+ +N +    +       ++
Sbjct: 58  VFLETEQPERLFYELKRLPEYTRLLGDNEGCFIPIEKEEENFLNILRRNEKETCVAGLTT 117

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
           +  +    +  +DGP   F   +  ++  K    VE+ + G+ 
Sbjct: 118 LDLDEDGGIRKADGPLQFFLDKIVKLNLRKRFAVVELKVAGKE 160


>gi|198275335|ref|ZP_03207866.1| hypothetical protein BACPLE_01496 [Bacteroides plebeius DSM 17135]
 gi|198271918|gb|EDY96188.1| hypothetical protein BACPLE_01496 [Bacteroides plebeius DSM 17135]
          Length = 171

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 13/175 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY   V  + EKK  E +           L     +P + V+     RK   ++   P 
Sbjct: 8   HWYAFYVRMHHEKKTAEKLEM---------LKVVHFLPIQEVIRQWSDRKKKIKQVVIPM 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSV 121
            + I      ++             +        +  +E       +           S 
Sbjct: 59  LIFICTDEKGRIELLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSDETIRFQSE 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
               GE+V V  G      G +  + E+ S+V + +   G  T VE+    V+K+
Sbjct: 119 PLAPGEKVEVIKGSLKGLQGELVEL-EDHSQVMIRIEHLGYAT-VEIPVGYVKKL 171


>gi|83816408|ref|YP_446838.1| hypothetical protein SRU_2746 [Salinibacter ruber DSM 13855]
 gi|83757802|gb|ABC45915.1| hypothetical protein SRU_2746 [Salinibacter ruber DSM 13855]
          Length = 280

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 14/172 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +    +  EKK    +  R           ++ +P +  V     R        F  Y
Sbjct: 116 WRVFYTRARAEKKCETRLDERR---------IDVMVPKKTEVRQWSDRTKEITEPLFRNY 166

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +    D++      T  ++  +     P+ + +  ++ +        +   + +   
Sbjct: 167 LFARVDEKDRLRVL--RTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPA 224

Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VGE V ++ GP       G V      ++ + V+V    +   +E+A + V+
Sbjct: 225 VGETVTITGGPERLQGLTGKVLQH-RGQTYLLVQVRAVRQAVKIEVAADWVQ 275


>gi|46204856|ref|ZP_00209587.1| COG0250: Transcription antiterminator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 63

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             +      F +G+ V ++DG FA+F   V+ VD ++ R  V V +FGR  P E+A   +
Sbjct: 1   EVQDFVETLFAIGDEVRITDGGFATFMAKVEKVDVKRGRYTVAVDVFGRPVPFEIAEESL 60

Query: 174 E 174
           E
Sbjct: 61  E 61


>gi|261885758|ref|ZP_06009797.1| transcription antitermination protein NusG [Campylobacter fetus
          subsp. venerealis str. Azul-94]
          Length = 77

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 35/66 (53%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
          M  +WY +Q Y+  E     +I   +   G++  + E+ +P+E V+ ++ G++  +E   
Sbjct: 1  MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINEESL 60

Query: 61 FPGYVL 66
          +PGY  
Sbjct: 61 YPGYAF 66


>gi|218961752|ref|YP_001741527.1| hypothetical protein CLOAM1470 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730409|emb|CAO81321.1| hypothetical protein CLOAM1470 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 191

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 18/175 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W +V     CEKK  +            H +T   +P      V + RKV+  +  FP 
Sbjct: 24  KWVVVHTKPRCEKKLADYAK--------QHQIT-YYLPQYTSKRVYQRRKVDVNKVLFPS 74

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV +      K    I  +   + FL        + + +  +   Q    ++     ++ 
Sbjct: 75  YVFVGIDFKGKQELLI--SGYTVNFLKVNAQKELIDELQAIYYGRQKNVQME---PGLWL 129

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVVIFGRVTPVELAYNQVEKIV 177
           E G  V + +GP     G+V+  D+ K + V ++V I  +   V++    + KI+
Sbjct: 130 EKGLEVEIVNGPLKGIRGVVE--DQSKLTEVRLQVNILKQAVLVKVRTQDI-KII 181


>gi|15921653|ref|NP_377322.1| transcription antitermination protein NusG [Sulfolobus tokodaii
           str. 7]
 gi|15622440|dbj|BAB66431.1| 152aa long hypothetical transcription termination-antitermination
           factor [Sulfolobus tokodaii str. 7]
          Length = 152

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 34/173 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+V    E      I  R+  + +   V  I +P                     GYV
Sbjct: 10  YAVRVTGGQEINVALMIEERIKTNNIKE-VYSIIVP-----------------PNVKGYV 51

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     V    +    V GF                   + +   + +   +  ++V
Sbjct: 52  ILEATGPHVVKLVSQGIRHVRGFAQG------------LVQKDDIIKFISKTTIAPAYKV 99

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176
           G+ V V+ GPF      V  +D  K+   V + I     P  V +  +QV+ +
Sbjct: 100 GDMVEVTSGPFRGMQAQVVRIDSAKN--EVVLNILESSFPLQVTVPIDQVKPV 150


>gi|223933545|ref|ZP_03625527.1| NusG antitermination factor [Streptococcus suis 89/1591]
 gi|223897805|gb|EEF64184.1| NusG antitermination factor [Streptococcus suis 89/1591]
          Length = 63

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
               +  +VG+ V + DG F  + G +  +D   ++V + + +FG  T  E+  +Q+
Sbjct: 6   QEFDIDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 60


>gi|260428101|ref|ZP_05782080.1| putative NusG antitermination factor [Citreicella sp. SE45]
 gi|260422593|gb|EEX15844.1| putative NusG antitermination factor [Citreicella sp. SE45]
          Length = 222

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 20/173 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +      E+ A   +  R               P     +  +G+    ERR+ PGY
Sbjct: 45  WYALLCRPQQERHAESWLAAR---------GVYAFHPVTSRRTRVRGKLREYERRYLPGY 95

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-------EIEHIMNQVEAAVQRP 117
           V  +       +  +           +      +               + Q +   ++ 
Sbjct: 96  VFARFDGIPIPHRVLTSPFLTGALCRSDGQWGVLGPKRLAALHEMRARDLRQEDERQEQK 155

Query: 118 VSSVFFEVGERV---CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
             +                GPF   +  V  +D     V V   +FGR   V 
Sbjct: 156 RRAAAARRVRAGERAMFRAGPFEGMSCEVVEIDAAGG-VKVRFDLFGRENSVT 207


>gi|182415449|ref|YP_001820515.1| NusG antitermination factor [Opitutus terrae PB90-1]
 gi|177842663|gb|ACB76915.1| NusG antitermination factor [Opitutus terrae PB90-1]
          Length = 180

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 17/171 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +      CEKK             +     E  +P    V   + +     +  FPGY
Sbjct: 23  WLVCHTKPRCEKKFAAL---------MAAERFEHYLPLVDSVRKYRQQTKRFTKPLFPGY 73

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           V    V  +K     +            E        ++  I+         P+ +    
Sbjct: 74  VFA-CVPNEKRARIFQQDLLARAIDVDDERRFLRQLDDVRAIVASGYELTVLPLLT---- 128

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSR-VHVEVVIFGRVTPVELAYNQVE 174
            G RV +  GP     G V   D    R V + V +  +   V+L    ++
Sbjct: 129 RGRRVKIVGGPLHGLEGFVD--DPSNPRGVVLSVDVLQQGLLVKLPAENLQ 177


>gi|325297257|ref|YP_004257174.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
 gi|324316810|gb|ADY34701.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
          Length = 525

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 21/167 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW++V+     E +    I     +      + E+  P+   V VR G         F G
Sbjct: 12  RWFLVRTKPGHEPELCARIEREKDKL---RNILEVYYPTHTKVYVRLG-DNEQRLPLFDG 67

Query: 64  YVLIKAVMTDKVYHTIKDT-----------------PKVIGFLGTGENPSPVTDSEIEHI 106
           YV + A  +  V     +                                   ++  + +
Sbjct: 68  YVFVLATQSALVEFLRDNCSDAYIRYNRKRTEEEKATPCTIPESQMRAFRDYNENYADKV 127

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
           +           ++   E  E V V DGP A   G +     +K  V
Sbjct: 128 IVLERPYSDYAFNAKEGEANEIVRVVDGPLAGQEGYICRFHRKKGLV 174


>gi|323454647|gb|EGB10517.1| hypothetical protein AURANDRAFT_62510 [Aureococcus anophagefferens]
          Length = 544

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           WYI+Q Y   E     +I   L           V  I +P+E+V S R  +  + E+  +
Sbjct: 51  WYILQCYVGNEVWCAATIEEILGKPEHVEQRSRVETILVPTEKVASTRGRKVYHKEKIIY 110

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-------------------TDSE 102
           PGYV  +  M  +++  +   PK+  F+G                            +++
Sbjct: 111 PGYVFCRLRMEQELWRVLTRVPKIANFVGIDAGMRNGIGEIVEGYKGAVTPVPLSAREAQ 170

Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +   ++     V        F +G+ V V DGP A   G+V++V  ++  V +
Sbjct: 171 MMLSVHLEGQEVGEDNIVDRFALGDVVAVLDGPSAGERGLVRSVKNDQLIVRL 223


>gi|313157678|gb|EFR57089.1| transcription termination/antitermination factor NusG [Alistipes
           sp. HGB5]
          Length = 180

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 43/163 (26%), Gaps = 17/163 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             +WY ++V  + E  A   +         D +  E  +P         G++        
Sbjct: 10  EQQWYAIRVTYSREMAAKSYL---------DSIGIESYVPMHFAERTYGGKRRKVWEPLI 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----- 116
              + I+             T  +   +        V           V A         
Sbjct: 61  HNLLFIRTSADRLREIKATTTLPIRYIMDRESKSPTVIPERQMQDFMAVVATQNEHVEIV 120

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
               V  E G+ V V++G FA   G        K    V V I
Sbjct: 121 APQDVDLEKGDPVRVTEGIFAGIEGRYIR---HKGHSKVAVAI 160


>gi|5739314|gb|AAD50428.1|AF161701_1 HnusG [Streptococcus pneumoniae]
          Length = 74

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           + EI  I+  +   VQ     V  E+G+ V + DG FA + G +  +D   ++V + + +
Sbjct: 2   EQEIRDILVSMGQTVQEFDFDV--EIGQTVRIIDGAFADYTGKITEID--NNKVKMIISM 57

Query: 160 FGRVTPVELAYNQV 173
           FG  T  E+  NQ+
Sbjct: 58  FGNDTVAEVNLNQI 71


>gi|139437029|ref|ZP_01771189.1| Hypothetical protein COLAER_00163 [Collinsella aerofaciens ATCC
           25986]
 gi|133776676|gb|EBA40496.1| Hypothetical protein COLAER_00163 [Collinsella aerofaciens ATCC
           25986]
          Length = 196

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 4/154 (2%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V   +  E++  E +   +  + +        +  +     R G      +  +  
Sbjct: 28  RWYLVHTPNGKERETCEKVRCIIPHNLMQD----AFVMQKEFWFKRDGAWSLQTKPMYKE 83

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y  +       +   +          G+ E        + +     V        +SV  
Sbjct: 84  YFFVATHDAAALDRALAQLSFGCRIAGSRERAYMPMPDDAQDWYRSVLDEDGVVRNSVAR 143

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                + +  GP       V  +D  K    V+V
Sbjct: 144 IEDGVLHIEQGPLVGQEARVHKIDRRKRWCLVDV 177


>gi|149276430|ref|ZP_01882574.1| Transcription antiterminator [Pedobacter sp. BAL39]
 gi|149232950|gb|EDM38325.1| Transcription antiterminator [Pedobacter sp. BAL39]
          Length = 173

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+ V      EKK  + +                  P  +V S    R    E   F  
Sbjct: 13  KWFAVYTRPRWEKKVEQQLKM---------QGITCYCPLRKVQSQWADRIKVVELPLFSS 63

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-F 122
           YV +     +++   ++    V+ F+    + + +  S IE I + +E      + S+  
Sbjct: 64  YVFVCIHPREELN--VRLNIGVVNFVYYMGHLAEIRHSVIEEIKSNLEKYPDAEIVSMRD 121

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            EVG+RV +  G      G V  V  +   + +
Sbjct: 122 LEVGDRVRIKAGLMGEQEGKVLQVRGKNVLLVI 154


>gi|89514493|gb|ABD75121.1| transcription antiterminator NusG [Sinorhizobium saheli]
          Length = 129

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 52  RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
           +       +F  Y+ +   +  + +  I  T  V   + +   P PV    +E ++   +
Sbjct: 6   QHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSEHAPLPVPHGVVESLLAATD 65

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
                       E G+++ V++GPF    G +  V      V + + I  R  P+ + 
Sbjct: 66  DEGFL-HPKELLEPGQKIRVTNGPFTDQLGTLDYV-GRSGAVRILIDIMNRAVPIYID 121


>gi|302813571|ref|XP_002988471.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii]
 gi|300143873|gb|EFJ10561.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii]
          Length = 311

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 47/216 (21%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY ++V++N E +++E++   L          E+  P     SV +G+   + +  
Sbjct: 85  MGMQWYTLRVFTNNEAESMEALRSTLEAE-FPDAKFEVWSPIIPTESVVRGKSRFAMKAM 143

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIE--------------- 104
             G++ ++ V+   VY    +   V  F+G          D+++                
Sbjct: 144 LRGHIFLRCVLEAPVYRHAMNERSVFCFVGAFPYKMKAGYDTKMMKGGYPDARIPAPVPS 203

Query: 105 -----------------------------HIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135
                                         ++ +V+             VG+ V V  G 
Sbjct: 204 YQIEALREEAATREREFKLEQQKKKASEDQVLLEVKEVDDLEQRQGDLRVGDMVAVISGA 263

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           + +F G +        +V + + +FG  T +E+  +
Sbjct: 264 YQNFQGTILEFLPA-GKVKIVLPVFGTDTEIEVDMD 298


>gi|313145599|ref|ZP_07807792.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134366|gb|EFR51726.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 181

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 16/176 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V   +N E+K  +                +  +P +  V  R+G+++  ER   P
Sbjct: 17  KHWYVVLTRTNSERKVRDY---------FQLQEVDTFLPVQNRVIEREGKRIERERLLLP 67

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             V +    + +    ++ T  V  F    +   P+ + D+++      ++ +  + + +
Sbjct: 68  RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 125

Query: 121 VFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                 G RV V+ G      G +   +  K  + V + +FG    V +  + V K
Sbjct: 126 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFGSA-MVTIPASYVRK 179


>gi|240140460|ref|YP_002964939.1| hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens
           AM1]
 gi|240010436|gb|ACS41662.1| Hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens
           AM1]
          Length = 187

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           +      F VG+ V +S+G FA+F   ++ VD ++ R  V V +FGR  P E+A   +E
Sbjct: 127 QDFVETLFSVGDEVRISNGAFATFMAKIEGVDVKRGRYTVAVDVFGRPVPFEIAEESLE 185


>gi|325295631|ref|YP_004282145.1| NGN domain-containing protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066079|gb|ADY74086.1| NGN domain-containing protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 168

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           TP+W++V +    E+     +           +  +   P  +VV     + +      F
Sbjct: 6   TPKWHVVYIKPRKEEVVKVQLER---------IGIKTFYPKVKVVK----KGIEKVEPMF 52

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           P Y+  K  +    ++       V   +  G     +++ E    +  V   +    + +
Sbjct: 53  PLYMFAKFSVVKDFFNVHF-ARGVKRVVKFGNQVPSLSE-EFIEYLRSVNGCLIE--NKL 108

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  + V + DGPF +F G V  +   + RV V +     +T +E+    VE
Sbjct: 109 GIKESDCVKIVDGPFRNFTGKVLKMKRGEERVVVLLKAMNSLT-LEVPVEYVE 160


>gi|255007890|ref|ZP_05280016.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 172

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 16/176 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V   +N E+K  +                +  +P +  V  R+G+++  ER   P
Sbjct: 8   KHWYVVLTRTNSERKVRDY---------FQLQEVDTFLPVQNRVIEREGKRIERERLLLP 58

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             V +    + +    ++ T  V  F    +   P+ + D+++      ++ +  + + +
Sbjct: 59  RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 116

Query: 121 VFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                 G RV V+ G      G +   +  K  + V + +FG    V +  + V K
Sbjct: 117 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFGSA-MVTIPASYVRK 170


>gi|284006544|emb|CBA71805.1| transcriptional activator [Arsenophonus nasoniae]
          Length = 126

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 48  VRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
           + +G+++      FP Y+ +K    +    TI+ T  V  F+  G  P  V D+ I+   
Sbjct: 1   MVRGKRITVTEALFPNYLFVKFDPEEIHTTTIRSTRGVSHFIRFGLYPVIVPDNIIDEFK 60

Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
           +  +  +    + V    G+ V +++G F     I    D E  R  + + I  +     
Sbjct: 61  SASKPEIVAAKTPVS---GDTVIITEGIFEGLKAIFSEPDGEN-RSVILLNILNQNIAKL 116

Query: 168 LAYNQVEK 175
           +   Q +K
Sbjct: 117 IDNKQFKK 124


>gi|238790596|ref|ZP_04634362.1| Transcriptional activator rfaH [Yersinia frederiksenii ATCC 33641]
 gi|238721325|gb|EEQ12999.1| Transcriptional activator rfaH [Yersinia frederiksenii ATCC 33641]
          Length = 130

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 43  ERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102
             +  + +G++  +    FP Y+ ++    +    TI  T  V  F+  G  P+ +    
Sbjct: 1   MTIEKIVRGKRAETTEALFPNYLFVEFDPENIHTTTISATRGVSHFVRFGVQPAVIPALV 60

Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
           I  + +     +  P   +    G+ V +++G F+    I    D E +R  + + +   
Sbjct: 61  IAEMQSHTADKIIAPEVPI---PGDVVTITEGIFSGLQAIYTEPDGE-ARSMLLLNMLNS 116

Query: 163 VTPVELAYNQVEK 175
                L   Q EK
Sbjct: 117 QVLQSLDNRQFEK 129


>gi|255008491|ref|ZP_05280617.1| putative LPS-related regulatory protein [Bacteroides fragilis
           3_1_12]
 gi|313146220|ref|ZP_07808413.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134987|gb|EFR52347.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 177

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 13/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK  E +       G+D+ +    +        +K          F   
Sbjct: 15  WYAVYTAPRAEKKVKEQLDK----IGIDNYLPLQPVIRMWNNRKKKIFIPVVPGCLFVY- 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFF 123
                 ++ +    I     V   L        + + ++E     +E + +    +   F
Sbjct: 70  ------ISSEEIAQITSIHGVAFLLKEKGQYVSIPEVQMETFRTMIERSHELVEFAPTDF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             G  V V  G        +    +  +++ + +   G
Sbjct: 124 VPGSTVQVIRGQLQGLVAELVE-CQGNNKLLLRIEGLG 160


>gi|265763089|ref|ZP_06091657.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255697|gb|EEZ27043.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 176

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 13/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK  E +       G+++ +    +        +K          F   
Sbjct: 15  WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123
                 ++ +    +     V   L        + + ++E     +  +      +   F
Sbjct: 70  ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             G  V V  G        +    +  +++ + V   G
Sbjct: 124 VPGTIVRVISGQLQGLEAELVE-CQGNNKLLLRVEGLG 160


>gi|60680552|ref|YP_210696.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|60491986|emb|CAH06747.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|301162089|emb|CBW21633.1| putative transcriptional regulator [Bacteroides fragilis 638R]
          Length = 172

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 16/176 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+V   +N E+K  +                +  +P +  V  R+G+++  ER   P
Sbjct: 8   KHWYVVLTRTNSERKVRDY---------FQLQEVDTFLPVQNRVIEREGKRIERERLLLP 58

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             V +    + +    ++ T  V  F    +   P+ + D+++      ++ +  + + +
Sbjct: 59  RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 116

Query: 121 VFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                 G RV V+ G      G +   +  K  + V + +FG    V +  + V K
Sbjct: 117 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFGSA-MVTIPASYVRK 170


>gi|294508771|ref|YP_003572830.1| transcriptional regulator NusG/RfaH family [Salinibacter ruber M8]
 gi|294345100|emb|CBH25878.1| putative transcriptional regulator NusG/RfaH family [Salinibacter
           ruber M8]
          Length = 175

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 14/172 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +    +  EKK    +  R           ++ +P +  V     R        F  Y
Sbjct: 11  WRVFYTRARAEKKCETRLDERR---------IDVMVPKKTEVRQWSDRTKEVTEPLFRNY 61

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +  +    D++      T  ++  +     P+ + +  ++ +        +   + +   
Sbjct: 62  LFARVDEKDRLRVL--RTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPA 119

Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VGE V ++ GP       G V      ++ + V+V    +   +E+A + V+
Sbjct: 120 VGETVTITGGPERLQGLTGKVLQH-RGQTYLLVQVRAVRQAVKIEVAADWVQ 170


>gi|225440570|ref|XP_002276763.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297740266|emb|CBI30448.3| unnamed protein product [Vitis vinifera]
          Length = 339

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +             + G  V V  G F  F+G +K +D +  +  V   +FG+ T V+L 
Sbjct: 271 IADGASTAKHDKLLKPGSTVRVVSGTFTEFSGSLKKLDRKNGKATVGFTLFGKETLVDLD 330

Query: 170 YNQV 173
            N++
Sbjct: 331 VNEI 334


>gi|253563030|ref|ZP_04840487.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946806|gb|EES87088.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 176

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 13/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK  E +       G+++ +    +        +K          F   
Sbjct: 15  WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123
                 ++ +    +     V   L        + + ++E     +  +      +   F
Sbjct: 70  ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             G  V V  G        +    +  +++ + V   G
Sbjct: 124 VPGTVVRVISGQLQGLEAELVE-CQGNNKLLLRVEGLG 160


>gi|60681203|ref|YP_211347.1| putative LPS-related regulatory protein [Bacteroides fragilis NCTC
           9343]
 gi|60492637|emb|CAH07409.1| putative LPS-related regulatory protein [Bacteroides fragilis NCTC
           9343]
          Length = 176

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 13/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK  E +       G+++ +    +        +K          F   
Sbjct: 15  WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123
                 ++ +    +     V   L        + + ++E     +  +      +   F
Sbjct: 70  ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             G  V V  G        +    +  +++ + V   G
Sbjct: 124 VPGTVVRVISGQLQGLEAELVE-CQGNNKLLLRVEGLG 160


>gi|319902765|ref|YP_004162493.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319417796|gb|ADV44907.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
          Length = 217

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 9/168 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61
             WY+  V ++ EK   + +  R+     D    E+ +  ++ + V   G++   ER  F
Sbjct: 35  KHWYVAIVNNHSEKLIADELVKRIKNQKEDEKDYEVYVAVQKEMRVLCNGKRKQVERIIF 94

Query: 62  PGYVLIKAVM------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           P  + I             + +  +    + G    G  P  V        + ++    +
Sbjct: 95  PALIFIYCTDLVRRKEIAYLPYIKRFMVNIAGAQQNGHRPVAVIPERQMIQLKRMVNDAE 154

Query: 116 RP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            P    S    +G+RV V+ G      G +    +    + + + I G
Sbjct: 155 NPVVFDSRPLHLGKRVRVNGGKLMGLEGHILQCSDGSINLVIMIDILG 202


>gi|167753455|ref|ZP_02425582.1| hypothetical protein ALIPUT_01729 [Alistipes putredinis DSM 17216]
 gi|167658080|gb|EDS02210.1| hypothetical protein ALIPUT_01729 [Alistipes putredinis DSM 17216]
          Length = 181

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 17/161 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++V      +  E +  +LS+ G+   +     P     +V   +K+   +      
Sbjct: 10  WYALKV---FYNRVFE-LEKQLSQEGVRSYI-----PLLHEDTVAGDKKIRKRKPAVSSL 60

Query: 65  VLIK---AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-- 119
           + I+     + +         P +  F    + P+ + D E+E  M    A         
Sbjct: 61  MFIRQSEHYLLELQDRMKASCPFMAYFDRETKKPAVIPDREMELFMQITSADTSDLEYFS 120

Query: 120 --SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
             ++ +  G++V V+ GPF    G +K +     R+ V + 
Sbjct: 121 DEAIDYRSGDKVRVTGGPFKGAEGYIKRI-RGNRRLVVALE 160


>gi|262275258|ref|ZP_06053068.1| hypothetical protein VHA_002240 [Grimontia hollisae CIP 101886]
 gi|262220503|gb|EEY71818.1| hypothetical protein VHA_002240 [Grimontia hollisae CIP 101886]
          Length = 171

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY V  + N EK         + R  L     E+ +P  ++      R+  +    F  
Sbjct: 5   RWYAVYTHFNEEK---------VLRDELLAKGYEVYLPERKLWETLGNRRRVTYEPLFKC 55

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           ++ ++          +K        +  G+  + +++S I  I   +         S   
Sbjct: 56  HLFVRTTPEGLKN--VKQAQGFSHLVRYGKYVATISESHIIKIKTILYYYEDATSVSNSN 113

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
             G  V V +GP     G++   + E+     E+   G    V +  + +
Sbjct: 114 VEGLAVAVVNGPLKGMIGVLPAGEGERPIAM-EIGQLGYSVNVTVPMDTI 162


>gi|309784559|ref|ZP_07679197.1| transcriptional activator RfaH [Shigella dysenteriae 1617]
 gi|308927665|gb|EFP73134.1| transcriptional activator RfaH [Shigella dysenteriae 1617]
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 38  ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97
              P   +  + +G++       FP Y+ ++         TI  T  V  F+  G +P+ 
Sbjct: 3   CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAI 62

Query: 98  VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           V  + I  +       +  P +      G++V +++G F  F  I    D E +R  + +
Sbjct: 63  VPSAVIHQLSVYKPKDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLL 118

Query: 158 VIFGRVTPVELAYNQVEKI 176
            +  +     +   +  K+
Sbjct: 119 NLINKEIKHSVKNTEFRKL 137


>gi|312969413|ref|ZP_07783615.1| transcriptional activator RfaH [Escherichia coli 2362-75]
 gi|312285960|gb|EFR13878.1| transcriptional activator RfaH [Escherichia coli 2362-75]
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 38  ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97
              P   +  + +G++       FP Y+ ++         TI  T  V  F+  G +P+ 
Sbjct: 3   CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAI 62

Query: 98  VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           V  + I  +       +  P +      G++V +++G F  F  I    D E +R  + +
Sbjct: 63  VPSAVIHQLSVYKPKDIVDPST---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLL 118

Query: 158 VIFGRVTPVELAYNQVEKI 176
            +  +     +   +  K+
Sbjct: 119 NLINKEIKHSVKNTEFRKL 137


>gi|2447002|dbj|BAA22443.1| NusG-like protein [Streptomyces griseus]
          Length = 38

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               +  ++ +  +V   V IFGR TPVEL+++Q++K
Sbjct: 1   MQATINEINADSKKVKGLVEIFGRETPVELSFDQIQK 37


>gi|325281625|ref|YP_004254167.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
 gi|325281646|ref|YP_004254188.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
 gi|324313434|gb|ADY33987.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
 gi|324313455|gb|ADY34008.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712]
          Length = 176

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 12/174 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ V   S  EKK  + +           L  E  +P + V+     RK         G
Sbjct: 12  HWHAVFTASRAEKKVRDRLEE---------LGVECFLPVQTVLRQWTYRKSRVVVPVIAG 62

Query: 64  YVLIKAVMTDKVYH-TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            V ++    ++V     K     +   G             +       +     +++  
Sbjct: 63  LVFVRVGRQEQVKVLQTKGVVAFLRLKGEAGAAVIPDKQMEDFRFLLDFSEEAVEMTNEN 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + G+ V V  G      G +        +V V + + G    V +  + VEK+
Sbjct: 123 IKAGDLVRVVKGSLRGMEGELIRHKGVT-KVLVRIDMLGCA-MVNIPASFVEKL 174


>gi|218528321|ref|YP_002419137.1| hypothetical protein Mchl_0271 [Methylobacterium chloromethanicum
           CM4]
 gi|218520624|gb|ACK81209.1| hypothetical protein Mchl_0271 [Methylobacterium chloromethanicum
           CM4]
          Length = 237

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 19/192 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-TEITIPSERVVS----------VRKGR 52
           RWY+     + E  A  SI   + R   +        +P E +             R+ +
Sbjct: 45  RWYVCTTAPSRELSAAASIRRAMVRGVREDETPFIPYVPCEYLWRRSVRSNLRVPRREQQ 104

Query: 53  KVNSERRFFPGYVLIKAVMT----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           +       F G +     +T     +     ++   + G LG+        +      + 
Sbjct: 105 RPVMRSYLFVGVLGGLCNVTLAALRERDIEGRNVHGLTGILGSTNRGPLAMNPSGLRWLR 164

Query: 109 QVEAAVQRPVSSV----FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
           Q+        +++       +GE V    G F+ F G      +  +   + + + G   
Sbjct: 165 QLGEDELAGRTNLTPLAGMPLGEEVRAGSGLFSGFIGKFVGTSDGGAVGVISLEVMGAPF 224

Query: 165 PVELAYNQVEKI 176
              L    ++++
Sbjct: 225 DYRLPIEDIQRV 236


>gi|298481737|ref|ZP_06999927.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298271959|gb|EFI13530.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 146

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 40  IPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT 99
           +P ++ +     R+   +    P  V +     +++      T      +     P+ + 
Sbjct: 1   VPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIP 60

Query: 100 DSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
           D ++      ++ + +           GE+V V  GP +   G +  V   KS++ V + 
Sbjct: 61  DEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLN 119

Query: 159 IFG 161
           + G
Sbjct: 120 MLG 122


>gi|168333282|ref|ZP_02691566.1| transcription antitermination protein NusG [Epulopiscium sp.
          'N.t. morphotype B']
          Length = 55

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
            +WY+V  YS  E K   +I   +    +  L+ ++ IP       + 
Sbjct: 3  EAKWYVVHTYSGYENKVKVNIEKAIKNRNMQELIQKVEIPMHNEEEEKN 51


>gi|323167597|gb|EFZ53303.1| transcriptional activator RfaH [Shigella sonnei 53G]
          Length = 137

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 4/139 (2%)

Query: 38  ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97
              P   +  + +G++       FP Y+ ++         TI  T  V  F+  G + + 
Sbjct: 3   CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASLAI 62

Query: 98  VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           V  + I  +       +  P +      G++V +++G F  F  I    D E +R  + +
Sbjct: 63  VPSAVIHQLSVYKPKDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLL 118

Query: 158 VIFGRVTPVELAYNQVEKI 176
            +  +     +   +  K+
Sbjct: 119 NLINKEIKHSVKNTEFRKL 137


>gi|53712992|ref|YP_098984.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52215857|dbj|BAD48450.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 176

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 13/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK  E +       G+++ +    +        +K          F   
Sbjct: 15  WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123
                 ++ +    +     V   L        + + ++E     +  +      +   F
Sbjct: 70  ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             G  V V  G        + +  +  +++ + V   G
Sbjct: 124 VPGTIVRVISGQLQGLEAELVD-CQGNNKLLLRVEGLG 160


>gi|326625693|gb|EGE32038.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 131

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 47  SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
            + +G++ +     FP Y+ ++         TI  T  V  F+  G +P+ V  S I  +
Sbjct: 6   KMVRGKRTSVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQL 65

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  V  P +      G+ V +++G F     I    D E  R  + + +  +    
Sbjct: 66  SIYKPEGVVDPET---PYPGDSVIITEGAFEGLKAIFTEPDGET-RSILLLNLLNKEVKQ 121

Query: 167 ELAYNQVEKI 176
            +      KI
Sbjct: 122 SVKNTGFRKI 131


>gi|300021678|ref|YP_003754289.1| hypothetical protein Hden_0141 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|300023083|ref|YP_003755694.1| hypothetical protein Hden_1561 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523499|gb|ADJ21968.1| hypothetical protein Hden_0141 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524904|gb|ADJ23373.1| hypothetical protein Hden_1561 [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 184

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 16/185 (8%)

Query: 3   PRWYIVQVYSNCEK----KAVESIGGR---LSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
             WY ++     E     +  E+   R   L + G D +         + +   +   + 
Sbjct: 1   MTWYAIRTNPQREFLLAGRYDENGEWRPGVLEKKGYDQVFCPTETKFRKTIKKGRRVSIP 60

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
                F GY+ +    +             +GF        P   S+ E    +  +   
Sbjct: 61  VLYPMFCGYIFVGGRFSWLELMAENYITAAVGFPDEFGRRRPAPISDYEMAKLREMSGGL 120

Query: 116 RPVSSV-----FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVEL 168
            P          F VGE   ++ GPFA     +  +   K+R  V + +F   R   V+L
Sbjct: 121 IPHRRSVNTHRAFRVGEMAAIAAGPFAHQVAQIAGLHGTKAR--VFLNLFNGTREVEVDL 178

Query: 169 AYNQV 173
               V
Sbjct: 179 DMLDV 183


>gi|323483812|ref|ZP_08089191.1| transcription antiterminator [Clostridium symbiosum WAL-14163]
 gi|323692776|ref|ZP_08107004.1| hypothetical protein HMPREF9475_01867 [Clostridium symbiosum
           WAL-14673]
 gi|323402897|gb|EGA95216.1| transcription antiterminator [Clostridium symbiosum WAL-14163]
 gi|323503218|gb|EGB19052.1| hypothetical protein HMPREF9475_01867 [Clostridium symbiosum
           WAL-14673]
          Length = 192

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 7/157 (4%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++Q  +  E + + S    +S       + E+       +    G     E+  FP
Sbjct: 1   MSWYVLQCRTGREGEIIRSCRQHIS----ADALKEVFSFRCERLWRTDGVWKLVEKEMFP 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV +++   DK+   ++   K++  +        V + E E  + ++         S  
Sbjct: 57  GYVFLESSRPDKLSEELEAYRKILRVMEEPGYLISVYE-EEEEYLRKLCGERHYLKMSFG 115

Query: 123 FEVGERVC--VSDGPFASFNGIVKNVDEEKSRVHVEV 157
           ++  E+    +++GP       +   D  +    + +
Sbjct: 116 YKDKEKGRSFITEGPLKGLENQIAKYDWHRRFAQLRI 152


>gi|60680713|ref|YP_210857.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|253563454|ref|ZP_04840911.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|60492147|emb|CAH06910.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|251947230|gb|EES87512.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162257|emb|CBW21802.1| putative transcriptional regulator [Bacteroides fragilis 638R]
          Length = 174

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 18/174 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+    S  E++  + +  R  R+          +P  ++    +GR   +       
Sbjct: 16  HWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRSREALCPQIAR 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
            VLI   ++D     I+    + G +                    + + +   V  +  
Sbjct: 67  CVLIWTSLSD-----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDTAVEWIPD 121

Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             E    V V+ GP     G +   D    R+ +     G    V +    +EK
Sbjct: 122 CLESATMVRVTGGPLTGLVGELDTSDTG-FRIRIRFHSMG-CFRVAVPEEWIEK 173


>gi|301162692|emb|CBW22239.1| putative LPS-related regulatory protein [Bacteroides fragilis 638R]
          Length = 176

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 13/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V      EKK  E +       G+++ +    +        +K          F   
Sbjct: 15  WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123
                 ++ +    +     V   L        + + ++E     +  +      +   F
Sbjct: 70  ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             G  V V  G        + +  +  +++ + V   G
Sbjct: 124 VPGTVVRVISGQLQGLEAELVD-CQGNNKLLLRVEGLG 160


>gi|237732782|ref|ZP_04563263.1| predicted protein [Mollicutes bacterium D7]
 gi|229384152|gb|EEO34243.1| predicted protein [Coprobacillus sp. D7]
          Length = 165

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 17/173 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V+SN   K + ++  R              IP   V   +  +K   +   F 
Sbjct: 1   MNWYVLYVFSNKTNKILSNLNQRKE--------LTAFIPKTEVFHRQAKKKTTKD--MFD 50

Query: 63  GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            Y+ +K+ +      D +         +I  L   E  S + + EIE   N ++      
Sbjct: 51  NYIFVKSDLKQNDFNDLLLSMKDKNDGLIKQLENAE-VSALREKEIEFFNNILDKDNVAR 109

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           VS  + E G+ + +++GP   +   +  V +      +++  F R   + +  
Sbjct: 110 VSVGYQEEGKTI-ITEGPLLHYQDHIVRVMKHHCTAQLDLPFFDRKIILGVEL 161


>gi|307694396|ref|ZP_07636633.1| NusG antitermination factor [Ruminococcaceae bacterium D16]
          Length = 165

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 14/164 (8%)

Query: 9   QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68
           QV +  E    +++           L     +P E       G          PGYV + 
Sbjct: 2   QVTTGQETGVRDAL---------QTLGIRAAVPREERAIRSGGGWTTKVYTLLPGYVFLA 52

Query: 69  AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGE 127
              + + Y+ +K  P V+ FLG                +  ++   +    S V      
Sbjct: 53  LEYSAENYYRVKAIPHVLRFLGPNGLSPSYLTHLEVEWLRLLDNGGEVLKPSRVETLPEG 112

Query: 128 RVCVSDGPFASFNGIVKNVDEEKS--RVHVEVVIFGRVTPVELA 169
            V + +G    F   V  +D +K   R  VE+ + G +  + L+
Sbjct: 113 GVRIVEGVLRHFP--VSRIDLDKRARRAKVEISLCGELKTLTLS 154


>gi|307108796|gb|EFN57035.1| hypothetical protein CHLNCDRAFT_51331 [Chlorella variabilis]
          Length = 1295

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           F+ G++V V+ G F  F G V  V  +  R+  E+ IFG+ T VEL+ + V
Sbjct: 759 FQPGQQVAVTQGNFRDFEGTV--VAAQGGRLTAELDIFGKRTRVELSPSDV 807



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 5/26 (19%), Positives = 13/26 (50%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS 29
            W+ ++V +  EK+  E++   +   
Sbjct: 128 HWWALRVKAGREKQVAEALERLVVEL 153


>gi|256839226|ref|ZP_05544736.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256740145|gb|EEU53469.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++     C K   + +   L R   L     +   PS   +  R+GR V + R    
Sbjct: 17  RWYVL-SLPACHKGPAKGLEKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120
            YV I++ + +  +   +D P                V+D E+E++     +        
Sbjct: 76  NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134

Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144
           V        G+R+ ++DG F      V 
Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162


>gi|183222752|ref|YP_001840748.1| putative transcription antitermination protein NusG [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912784|ref|YP_001964339.1| transcription antiterminator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777460|gb|ABZ95761.1| Transcription antiterminator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781174|gb|ABZ99472.1| Putative transcription antitermination protein nusG [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 179

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 15/162 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WYIV      EKK  E +              E  +P  +       R         P Y
Sbjct: 13  WYIVYTKPRAEKKLSELLRK---------YHIENYLPIRKERKKWTDRFKWIHVPVLPSY 63

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122
           + ++ V        ++  P  + F+     P+ V  ++++ +   ++   +  +    + 
Sbjct: 64  IFVRIVFWRDKNKVLQ-LPGSVQFVFHKGQPAIVEQNDLDVLEKGLQEYAESLKMNPELL 122

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
            + G+ V + DG F      +  V   K++  V   I G  T
Sbjct: 123 LQKGKLVRIIDGSFVGKTMEIIKV---KNKTLVVCRIPGVET 161


>gi|160889802|ref|ZP_02070805.1| hypothetical protein BACUNI_02233 [Bacteroides uniformis ATCC 8492]
 gi|156860794|gb|EDO54225.1| hypothetical protein BACUNI_02233 [Bacteroides uniformis ATCC 8492]
          Length = 206

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++     E  AV  +                 +P +  VS+RKG+KV +        
Sbjct: 38  WHAMRATYRRELDAVHLLEKE---------NLGCFVPMQYKVSIRKGKKVRTLVPVIRNL 88

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           V + A  +D      + T               + D E++  +                 
Sbjct: 89  VFVHARPSDVQRVKSQITYLQYITDTRSGQKIIIPDHEMQRFIAVAGTYNDHLLYFQPEE 148

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G RV ++ G FA   GI   V   + R  V + I G
Sbjct: 149 LNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 188


>gi|224539462|ref|ZP_03680001.1| hypothetical protein BACCELL_04367 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518920|gb|EEF88025.1| hypothetical protein BACCELL_04367 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 179

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 +P +  +S++KG+KV          
Sbjct: 10  WYAMRATYRREPDAMRLLEKEK---------LGCFVPMQYKISIKKGKKVRVLVPVIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  ++      + T               ++DSE++  +                 
Sbjct: 61  LFVHACPSEVKRIKSQVTYLQYITDTRSGQKIIISDSEMQRFIAVAGTYNDHLMYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V ++ G F    GI   V   + R  V V I G
Sbjct: 121 LNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVVAIQG 160


>gi|270294077|ref|ZP_06200279.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275544|gb|EFA21404.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 178

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++     E  AV  +                 +P +  VS+RKG+KV +        
Sbjct: 10  WHAMRATYRRELDAVHLLEKES---------LGCFVPMQYKVSIRKGKKVRTLVPVIRNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           V + A  +D      + T               + D E++  +                 
Sbjct: 61  VFVHARPSDVQRVKSQITYLQYITDTRSGQKIIIPDHEMQRFIAVAGTYNDHLLYFQPEE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G RV ++ G FA   GI   V   + R  V + I G
Sbjct: 121 LNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 160


>gi|91217294|ref|ZP_01254255.1| transcription activator or transcription antitermination factor
           [Psychroflexus torquis ATCC 700755]
 gi|91184637|gb|EAS71019.1| transcription activator or transcription antitermination factor
           [Psychroflexus torquis ATCC 700755]
          Length = 159

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+++      EKK    +  +L+RSG++        P+   V V   RK   E    P
Sbjct: 7   KKWFVLYTKPRGEKK----LSEQLNRSGIEAY-----CPTRTEVRVWSDRKKKVEMPVLP 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
             +L+K    +K      ++P  I +L     PS VT  E++ + + +  +         
Sbjct: 58  SMLLVKIE--NKQRAKALESPLAIRYLFWNGKPSVVTQVEVDTLRSILGDSKFESHELDQ 115

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              G+++ +++  F +  G V+ V+  K    V +
Sbjct: 116 LRPGQKLDMTELGFENIEGTVQYVN--KKECWVVL 148


>gi|317478832|ref|ZP_07937983.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316905008|gb|EFV26811.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 178

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++     E  AV  +                 +P +  VS+RKG+KV +        
Sbjct: 10  WHAMRATYRRELDAVHLLEKE---------NLGCFVPMQYKVSIRKGKKVRTLVPVIRNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           V + A  +D      + T               + D E++  +                 
Sbjct: 61  VFVHARPSDVQRVKSQITYLQYITDTRSGQKIIIPDHEMQRFIAVAGTYNDHLLYFQPEE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G RV ++ G FA   GI   V   + R  V + I G
Sbjct: 121 LNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 160


>gi|237732781|ref|ZP_04563262.1| nusG antitermination factor [Mollicutes bacterium D7]
 gi|229384151|gb|EEO34242.1| nusG antitermination factor [Coprobacillus sp. D7]
          Length = 163

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 11/171 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+ +  +   KK V ++  +++ +          IP       R        +  +P
Sbjct: 1   MYWYVARCKTGRTKKLVSTLNKQVNMN--------AFIPKSERCFGRGETAEFIVKEIYP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            YV IK+ +  + +                      +    SE + ++ ++         
Sbjct: 53  DYVFIKSDLDQEAFDEQFKEYFKTINGLVDLLEYKDTYPLTSEEQSLLEKLLDNTDTIKH 112

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           +    V  R   +DGP      ++K VD+ +    ++  IF     V + Y
Sbjct: 113 TKGVIVDRRFVPTDGPLVGLEDMIKKVDKYRRFATLDTEIFTGKLLVAIDY 163


>gi|147918706|ref|YP_687571.1| transcription antitermination protein NusG [uncultured methanogenic
           archaeon RC-I]
 gi|110622967|emb|CAJ38245.1| 50S ribosomal protein L26E [uncultured methanogenic archaeon RC-I]
          Length = 164

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 31/169 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +N E+     I     +  LD  +  + +P E                   GYV
Sbjct: 16  FAVKTTANQERSVANLIAMVTRKENLD--IRSVLVPEE-----------------LKGYV 56

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++ M + V   IK+ P     +    + + V                    +      
Sbjct: 57  LVESPMAEIVEDCIKNIPHAKAVVRGASSITEVQHFLAPK------------PTVTGISE 104

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V ++ GPF      VK +DE K  + VE+       PV +  + V 
Sbjct: 105 GDIVELTAGPFKGEKARVKRIDEAKEEITVELSEAMVPIPVTVRGDIVR 153


>gi|301309061|ref|ZP_07215006.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300833087|gb|EFK63712.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 370

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          +K    K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDKISPSKGLDAELSRRERRG--ETLFEYFAPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV I A   +                   G       ++D E+E +     +
Sbjct: 83  TKRPLLYNYVFIHASENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMETLRWVAVS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPFA     V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193


>gi|325300526|ref|YP_004260443.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
 gi|324320079|gb|ADY37970.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170]
          Length = 500

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 21/167 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W++V      E +    I       G    + E+  P+   V VR+G     ++ FF G
Sbjct: 11  HWFLVCTKPGHEPELCLLIERE---KGKIRNILEVYCPTHTKVYVRRG-DNEQQQPFFNG 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------------PSPVTDSEIEHI 106
           YV + A     V     +      +                            ++  + +
Sbjct: 67  YVFVLATQDALVEFLRDNNSDAYIWYNRKCTPDEKATVCTIPESQMRAFRDYNENYADKV 126

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
           +          V++   E  E V V DGP A   G +    ++K  V
Sbjct: 127 IVLERPYTDYAVNAKTDEPNEIVRVVDGPLAGCEGYICRFHKKKGLV 173


>gi|119719322|ref|YP_919817.1| NusG antitermination factor [Thermofilum pendens Hrk 5]
 gi|119524442|gb|ABL77814.1| NusG antitermination factor [Thermofilum pendens Hrk 5]
          Length = 157

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 35/173 (20%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           R+Y ++V S  E    + +  R +                     +             G
Sbjct: 10  RFYALRVTSGQEYNVAQLLYRRAASG-------------------KYKVYSILVVPGLKG 50

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
            V +++    +          V G +                 + ++E  ++        
Sbjct: 51  MVFVESDALYEAQRLAYGLKHVRGVVRGA------------VSLQEMEGLLKPKPLVDQL 98

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVE 174
            VG+ V +  GPF    G +  +D+ ++ V VE+   +F  V PV +  + ++
Sbjct: 99  NVGDFVEIIRGPFTGMRGRIVGIDKSRNEVKVELAEAVF--VLPVTINADDIK 149


>gi|6478916|gb|AAF14021.1|AC011436_5 unknown protein [Arabidopsis thaliana]
          Length = 332

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               +   A +          G  V V  G FA F G +K ++ + ++  V   +FG+ T
Sbjct: 258 RAPRKATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKET 317

Query: 165 PVELAYNQV 173
            VE+  N++
Sbjct: 318 LVEIDINEL 326


>gi|262382326|ref|ZP_06075463.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295204|gb|EEY83135.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 354

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++     C K   + +   L R   L     +   PS   +  R+GR V + R    
Sbjct: 17  RWYVL-SLPACHKGPAKGLRKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120
            YV I++ + +  +   +D P                V+D E+E++     +        
Sbjct: 76  NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134

Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144
           V        G+R+ ++DG F      V 
Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162


>gi|329963040|ref|ZP_08300820.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328529081|gb|EGF56011.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 178

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 14/158 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 +P +  +S++KG+KV +        
Sbjct: 10  WYAMRATYRREPDAMRLLEKE---------HLGCFVPMQYKISIKKGKKVRALVPVIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  +D      +                 + D+E++  +                 
Sbjct: 61  LFVHARPSDLKRVKSQVAYLQYITDTRSGEKIIIPDNEMQRFIAVAGTYNDHLLYFQPEE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
           +    G +V V+ G F    G+   V   +  RV V +
Sbjct: 121 LNLSKGTKVRVTGGDFEGQEGVFLKVKGARDRRVIVAI 158


>gi|307942421|ref|ZP_07657772.1| putative transcription termination factor NusG [Roseibium sp.
           TrichSKD4]
 gi|307774707|gb|EFO33917.1| putative transcription termination factor NusG [Roseibium sp.
           TrichSKD4]
          Length = 206

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +V     CE++A   +  +   + L     E   P       R  + +   +  F  Y
Sbjct: 41  WGVVYANPQCERRAFAGLINQGVVAHLPEERIERVQP-------RSKKTIVVNKPMFTRY 93

Query: 65  VLIKAVM-TDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           +         + + T+++   V G L   +  +P  +   E+  ++ Q+    +R     
Sbjct: 94  LFAGIDRQAGQDWSTVRECDGVEGVLSLDSAGSPYLIAAHEMVALIKQL-DTGERIADGT 152

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           F +VG+ + +  G FA F   V     +   V+ E  +FGR T ++   + +
Sbjct: 153 FIKVGQSLLLPKGVFAKFKMTVTAYKPDAETVYGEFSLFGRKTRIKTTVDDL 204


>gi|298374772|ref|ZP_06984730.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298269140|gb|EFI10795.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 354

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++     C K   + +   L R   L     +   PS   +  R+GR V + R    
Sbjct: 17  RWYVL-SLPACHKGPAKGLEKELDRRVRLGGPTFDFFAPSFVEMHRREGRLVETHRPLLY 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120
            YV I++ + +  +   +D P                V+D E+E++     +        
Sbjct: 76  NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134

Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144
           V        G+R+ ++DG F      V 
Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162


>gi|169350273|ref|ZP_02867211.1| hypothetical protein CLOSPI_01017 [Clostridium spiroforme DSM 1552]
 gi|169293056|gb|EDS75189.1| hypothetical protein CLOSPI_01017 [Clostridium spiroforme DSM 1552]
          Length = 165

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 28/177 (15%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++   S+  ++ + ++  +           E  IPS  V               F 
Sbjct: 1   MNWYVLYTLSHRTQRILGNLNKKKE--------LEAFIPSYEVCHRYTKEITIK--PMFN 50

Query: 63  GYVLIKAVMTDKVYH-----TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            Y+ IK ++  + ++       +D   +I  L   +  +           N V  +    
Sbjct: 51  NYIFIKTMLNQEEFNTLLFNMKEDNNGLIRQLKNADTSALTKK--EIEFFNLVLDSKHVV 108

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-----------SRVHVEVVIFGRV 163
             S  ++      V  GP  ++   +  VD+              R+ + + I G+ 
Sbjct: 109 RLSHGYQENGITRVISGPLVAYENHIVKVDKHNCCAFLDLIFFDRRIKLGIDILGKK 165


>gi|301308465|ref|ZP_07214419.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300833935|gb|EFK64551.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 354

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++     C K   + +   L R   L     +   PS   +  R+GR V + R    
Sbjct: 17  RWYVL-SLPACHKGPAKGLRKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120
            YV I++ + +  +   +D P                V+D E+E++     +        
Sbjct: 76  NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134

Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144
           V        G+R+ ++DG F      V 
Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162


>gi|18398425|ref|NP_566346.1| PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription
           elongation regulator [Arabidopsis thaliana]
 gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]
 gi|22136582|gb|AAM91077.1| AT3g09210/F3L24_8 [Arabidopsis thaliana]
          Length = 333

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               +   A +          G  V V  G FA F G +K ++ + ++  V   +FG+ T
Sbjct: 259 RAPRKATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKET 318

Query: 165 PVELAYNQV 173
            VE+  N++
Sbjct: 319 LVEIDINEL 327


>gi|218512771|ref|ZP_03509611.1| transcription antitermination protein NusG [Rhizobium etli 8C-3]
          Length = 40

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI 40
          M  RWYIV  YSN EKK  E I  +  + GL+HL  +I +
Sbjct: 1  MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILV 40


>gi|223984605|ref|ZP_03634732.1| hypothetical protein HOLDEFILI_02028 [Holdemania filiformis DSM
           12042]
 gi|223963452|gb|EEF67837.1| hypothetical protein HOLDEFILI_02028 [Holdemania filiformis DSM
           12042]
          Length = 170

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 14/165 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY V+V  + E+  +E          +     E  +P ++    ++      ER  FP
Sbjct: 1   MRWYFVEVEKHHEEDVLEL---------MKSSPFEAFLPKKQRYFKKQVLVTWVERLLFP 51

Query: 63  GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           G ++I +       T +    +     +  ++   E        +    +N +       
Sbjct: 52  GTIMITSDFPQAEFTKQFNEWLSQHSDISQWIHLEEKEYFSLQEDERLFLNSLMNEQHVI 111

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
             S  F   +++ V  GP       +K +D  +    V   I G+
Sbjct: 112 PISTGFLNEKQLIVESGPLQGLESRIKKIDRHQRTAQVRFQICGQ 156


>gi|261368740|ref|ZP_05981623.1| putative transcription termination factor NusG [Subdoligranulum
           variabile DSM 15176]
 gi|282569162|gb|EFB74697.1| putative transcription termination factor NusG [Subdoligranulum
           variabile DSM 15176]
          Length = 185

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 15/174 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+   Y++QV +  EK     I GRL ++G+         P       R GR        
Sbjct: 1   MSM--YVLQVITGREK----DICGRLRKAGIPAY-----CPRAVRQIRRGGRWQEQTYTL 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           +P Y+ ++      VY+ ++    V+ +LG          ++ E  +  +     +PVS 
Sbjct: 50  YPAYIFVQCERVVDVYYAVRREDGVLYWLGATRGTPEPLSADEEANILWLAGDGPQPVSK 109

Query: 121 VFFEVGERVCVSDGP---FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                   +  + GP    A    + ++V   + R    + + G+   + L++ 
Sbjct: 110 AVCRADGSLDFTSGPLKRLAELEAL-RSVFRRERRATAVLPLHGKEHKINLSFE 162


>gi|21593340|gb|AAM65289.1| unknown [Arabidopsis thaliana]
          Length = 333

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164
               +   A +          G  V V  G FA F G +K ++ + ++  V   +FG+ T
Sbjct: 259 RAPRKATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKET 318

Query: 165 PVELAYNQV 173
            VE+  N++
Sbjct: 319 LVEIDINEL 327


>gi|167754736|ref|ZP_02426863.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402]
 gi|167705568|gb|EDS20147.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402]
          Length = 169

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 17/173 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V+SN   K + ++  R              IP   V   +  +K   +   F 
Sbjct: 5   MNWYVLYVFSNKTNKILSNLNQRKE--------LTAFIPKTEVFHRQAKKKTTKD--MFD 54

Query: 63  GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            Y+ +K+ +      D +         +I  L   E  S + + EIE   N ++      
Sbjct: 55  NYIFVKSDLKQNDFNDLLLSMKDKNDGLIKQLENAE-VSALREKEIEFFNNVLDKDNVAR 113

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
           VS  + E G+ + +++GP   +   +  V +      +++  F R   + +  
Sbjct: 114 VSVGYQEEGKTI-ITEGPLLHYQDYIVRVMKHHCTAQLDLPFFDRKIILGVEL 165


>gi|150007078|ref|YP_001301821.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|255015297|ref|ZP_05287423.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           sp. 2_1_7]
 gi|256840235|ref|ZP_05545743.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381072|ref|ZP_06074210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377498|ref|ZP_06987450.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
 gi|301311259|ref|ZP_07217187.1| putative transcription termination factor NusG [Bacteroides sp.
           20_3]
 gi|149935502|gb|ABR42199.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|256737507|gb|EEU50833.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296249|gb|EEY84179.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265517|gb|EFI07178.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
 gi|300830833|gb|EFK61475.1| putative transcription termination factor NusG [Bacteroides sp.
           20_3]
          Length = 220

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 9/168 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFF 61
             WYI  V +  EK   + +  R++         E+ I S++ +  +  G++   +R  F
Sbjct: 39  KHWYIAIVNNKSEKLCRDKLEKRIASQPEGEKDYEVYIASQKEMCLLPSGKRKQVDRIVF 98

Query: 62  PGYVLIKAVM------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
              V I+            + +  +    + G    G  P      E    + ++    +
Sbjct: 99  RSIVFIRCTDVLRRKEIVHLPYIKRFMVNIAGERSGGIRPVAFIPDEQMVKLRRMLDDSE 158

Query: 116 RPVSSVFFEV--GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            PV      +  G RV ++ G      G V  V++      + V + G
Sbjct: 159 EPVIIDPRPLPLGARVRINGGKLHGLEGNVLEVEDGNLNFVIRVDLLG 206


>gi|293373743|ref|ZP_06620090.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
 gi|292631398|gb|EFF50029.1| transcription termination/antitermination factor NusG [Bacteroides
           ovatus SD CMC 3f]
          Length = 243

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 22/157 (14%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--- 58
           +P WY ++     EKKA +          +         P+   V + KG++        
Sbjct: 65  SPHWYALRTTYGREKKAYDY---------MTAKGITAFYPTTDTVKLIKGKRKIVTESRL 115

Query: 59  -RFFPGYV----LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
              F  Y     L   V  +     ++   + +      E    +        +  + AA
Sbjct: 116 PNIFFAYGTEEQLKSFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMDSLKIICAA 175

Query: 114 VQRPVSSVFFEV-----GERVCVSDGPFASFNGIVKN 145
                     EV     G+ V V+DG F    G V  
Sbjct: 176 DADNTIVSLVEVPKFEKGQLVRVTDGAFKGVIGRVAR 212


>gi|290953568|ref|ZP_06558189.1| transcription antitermination protein nusG [Francisella
          tularensis subsp. holarctica URFT1]
 gi|295313122|ref|ZP_06803811.1| transcription antitermination protein nusG [Francisella
          tularensis subsp. holarctica URFT1]
          Length = 57

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 5  WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
          WY+VQV+S  EK+    +   +  +GL +    I +P+E VV ++ G+K  SER+
Sbjct: 3  WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERK 57


>gi|253578793|ref|ZP_04856064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849736|gb|EES77695.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 101

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 80  KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139
           +    +   +GTG+   P+   E   ++ ++    Q    S      +RV +  GP    
Sbjct: 6   RKVIGLTKLIGTGDEIVPLVQ-EEIDLLMKIGTDKQLVEMSSGIIENDRVQILAGPLMGM 64

Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            G ++ +D  K   ++E+ +FGR   ++     + K
Sbjct: 65  EGNIRRIDRHKRTAYLEIEMFGRTVEMKGGLEIIRK 100


>gi|118431766|ref|NP_148437.2| transcription antitermination protein NusG [Aeropyrum pernix K1]
 gi|152031650|sp|Q9Y9W3|NUSG_AERPE RecName: Full=Putative transcription antitermination protein nusG
 gi|116063088|dbj|BAA81187.2| putative transcription antitermination protein NusG [Aeropyrum
           pernix K1]
          Length = 151

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 33/174 (18%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           R+Y + V S  E      I  R    GLD  +  I +P                     G
Sbjct: 8   RFYAILVTSGAEVNVATIIAERARALGLD--IRSIIVP-----------------PRIKG 48

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV+++A     VY   +    V                + E +M  V+  V+ P      
Sbjct: 49  YVILEAHDPGDVYDATRGLRHV--------KRRRPLILKFEEVMKLVKPEVEIPALK--- 97

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQVEKI 176
             G+ V +  G F      V +V++ K +V V  +    R T   +  ++V  +
Sbjct: 98  -PGQVVEIVAGAFKGMKARVIDVNQSKGQVTVSLLEPLFRAT-ATIPIDEVRPV 149


>gi|326799431|ref|YP_004317250.1| NGN domain-containing protein [Sphingobacterium sp. 21]
 gi|326550195|gb|ADZ78580.1| NGN domain-containing protein [Sphingobacterium sp. 21]
          Length = 169

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W  +      EKK             L     E   P  +       RK   E   F 
Sbjct: 5   KQWIAIYTRPKWEKKV---------NQFLVQQGIESFCPLIKTKRQWADRKKIVEIPLFS 55

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV  +   +++  + ++    V+G +     P+ +T++EI  I   +        S  F
Sbjct: 56  SYVFAEVNHSEQ--YQVEQAAGVVGVVYHCGKPAIITEAEINRIKTLLREDYPELESISF 113

Query: 123 FEVG--ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172
            ++G   R+ V  G  + + G V  V   K +  V V   F      ++  +Q
Sbjct: 114 DQIGLGHRIKVKTGVLSDWQGEVIMV---KGKSVVMVLEQFNCALIAKVDVSQ 163


>gi|265762678|ref|ZP_06091246.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255286|gb|EEZ26632.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 174

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 18/174 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+    S  E++  + +  R  R+          +P  ++    +GR   +       
Sbjct: 16  HWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRSREALWPQIAR 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
            VLI   ++D     I+    + G +                    + + +   V  +  
Sbjct: 67  CVLIWTSLSD-----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDTAVEWIPD 121

Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             E    V V+ GP     G +   D    R+ +     G    V +    +EK
Sbjct: 122 CLESATMVRVTGGPLTGLVGELDTSDTG-FRIRIRFHSMG-CFRVAVPEEWIEK 173


>gi|297620007|ref|YP_003708112.1| NusG antitermination factor [Methanococcus voltae A3]
 gi|297378984|gb|ADI37139.1| NusG antitermination factor [Methanococcus voltae A3]
          Length = 147

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  E+   E++  R  R  L+       + S                    GY+
Sbjct: 3   FAVRTTTGQEQNVAEALASRAERENLE-------VFSILATE------------DLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     +   ++   KV G +        V + E      ++  ++ +         
Sbjct: 44  LVEATNKGAIEELVRQNFKVKGIVPGES---SVKELEHLLTPTKIIESIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  + +E++      P+ +   QV KI+
Sbjct: 92  GDVVELVGGPFKGEKARVTRVDKNKEEITLELMEAAVAIPITVGIEQV-KII 142


>gi|329960547|ref|ZP_08298914.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328532611|gb|EGF59401.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 177

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 17/162 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ V+V    E      +              E  IP       R G+++         
Sbjct: 6   NWFAVRVTYGRELVLKAMLDEEK---------IESFIPMRYEYVSRNGKRMRKLVPAIHN 56

Query: 64  YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            V I      M +         P           P  + D ++   +       +  +  
Sbjct: 57  LVFIHCTRKKMDEIKELFGAKVPIRYIMDRETRQPIVIPDEQMRSFILVSGNYDEAVLYL 116

Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              E     G++V ++DG F    G    +  ++ RV V + 
Sbjct: 117 EPMELALVKGQKVRITDGIFKGVIGEFVRIRHDR-RVVVSIE 157


>gi|298378114|ref|ZP_06988049.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298264982|gb|EFI06660.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 232

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          +K    K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDKINPSKGLDAELSRRERRG--ETLFEYFAPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV I A   +                   G       ++D E++ +     +
Sbjct: 83  TKRPLLYNYVFIHASENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMDTLRWVAAS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPFA     V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193


>gi|18656144|emb|CAD23070.2| putative termination transcription factor [Haloferax mediterranei]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 29/169 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  E+   + I  +         +  +  P                      YV
Sbjct: 4   FAVKTTARQERTVADMIASK-----DFSQIHAVLAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     V   +++ P   G + +G      + +E+EH ++                 
Sbjct: 42  MVEADDDGIVSRVLEEIPHARGLVESGGMVGTSSMAEVEHFLSPTPDVE-------GIAE 94

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 95  GDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143


>gi|160891065|ref|ZP_02072068.1| hypothetical protein BACUNI_03512 [Bacteroides uniformis ATCC 8492]
 gi|156859286|gb|EDO52717.1| hypothetical protein BACUNI_03512 [Bacteroides uniformis ATCC 8492]
          Length = 243

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 22/157 (14%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--- 58
           +P WY ++     EKKA +          +         P+   V + KG++        
Sbjct: 65  SPHWYALRTTYGREKKAYDY---------MTAKGITAFYPTTDTVKLIKGKRKIVTESRL 115

Query: 59  -RFFPGYV----LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
              F  Y     L   V  +     ++   + +      E    +        +  + AA
Sbjct: 116 PNIFFAYGTEEQLKTFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMESLKIICAA 175

Query: 114 VQRPVSSVFFEV-----GERVCVSDGPFASFNGIVKN 145
                     EV     G+ V V DG F    G V  
Sbjct: 176 DADNTIVSLIEVPKFEKGQLVRVIDGAFKGVIGRVAR 212


>gi|99080639|ref|YP_612793.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
 gi|99036919|gb|ABF63531.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
          Length = 193

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 6   YIVQVYSNCEKKAVESIGG---------RLSRSGLDHLVTEI-----TIPSERVVSVRKG 51
           Y +      E    + +           RL    +    + +      +P      +   
Sbjct: 5   YAINTTRGKEFAVRDDLKAMGVNPWVPVRLGSRYVKEKRSAVWYDAAYVPKLMFAVIPAI 64

Query: 52  RKVNSERRFFPG---YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
              +             L +  +     H  K T  V+  +    +     ++E      
Sbjct: 65  IWRDVLEHKHVIGKPVALSRLDIEGIPGHVKKSTGAVVPPVPGLNDFRRAVEAEYADAER 124

Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV----DEEKSRVHVEVVIFGRVT 164
               +         F+ G+ + +   P+  F+     V     ++ +++ VE+ IFGRVT
Sbjct: 125 ARANSE----YQCQFKPGQALELLCPPWEGFSATFAKVIKHAHDDYAKLRVELEIFGRVT 180

Query: 165 PVELAYNQVE 174
           P+++  ++V+
Sbjct: 181 PLDVDPDRVK 190


>gi|150010377|ref|YP_001305120.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149938801|gb|ABR45498.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 351

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++     C K   + +   L R   L     +   PS   +  R+G  V + R    
Sbjct: 17  RWYVL-SLPACHKGPAKGLKKELDRRVRLGEPTFDFFAPSFVEMRRREGHLVETHRPLLY 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120
            YV I++ + +  +   +D P                V+D E+E++     +        
Sbjct: 76  NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134

Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144
           V        G+R+ ++DG F      V 
Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162


>gi|297833678|ref|XP_002884721.1| PTAC13 [Arabidopsis lyrata subsp. lyrata]
 gi|297330561|gb|EFH60980.1| PTAC13 [Arabidopsis lyrata subsp. lyrata]
          Length = 337

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                         G  V V  G FA F G +K ++ + ++  V   +FG+ T VE+  N
Sbjct: 270 ETKDSKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDIN 329

Query: 172 QV 173
           ++
Sbjct: 330 EL 331


>gi|255012360|ref|ZP_05284486.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           sp. 2_1_7]
          Length = 351

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++     C K   + +   L R   L     +   PS   +  R+G  V + R    
Sbjct: 17  RWYVL-SLPACHKGPAKGLKKELDRRVRLGEPTFDFFAPSFVEMRRREGHLVETHRPLLY 75

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120
            YV I++ + +  +   +D P                V+D E+E++     +        
Sbjct: 76  NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134

Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144
           V        G+R+ ++DG F      V 
Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162


>gi|325299826|ref|YP_004259743.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           salanitronis DSM 18170]
 gi|324319379|gb|ADY37270.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           salanitronis DSM 18170]
          Length = 355

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY++ + S+    A      R  R      V +   PS   V   KG+ V ++      
Sbjct: 20  RWYVMLLPSSHRGLATGLKEERERRMKYGEPVFDYFAPSYVEVKKIKGKFVKTDCPLLYN 79

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV I+A   D+++H  ++ P+                   +  M  ++       + +  
Sbjct: 80  YVFIRAT-VDEIFHLKRNLPQYNFLPKVKGEKEDYYPYLSDRAMENLKWVADSYSNVLPV 138

Query: 124 EV--------GERVCVSDGPFASFNGIVK 144
            V        G+RV +++G F      V 
Sbjct: 139 YVPKSETLVKGDRVRITEGQFKGAEATVV 167


>gi|292654882|ref|YP_003534779.1| transcription antitermination protein NusG-like protein [Haloferax
           volcanii DS2]
 gi|291370778|gb|ADE03005.1| transcription antitermination protein NusG homolog [Haloferax
           volcanii DS2]
          Length = 150

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 29/169 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  E+   + I  +         +  +  P                      YV
Sbjct: 4   FAVKTTARQEQTVADMIATKEF-----EQIHAVLAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     V   +++ P   G + +G      + +E+EH ++                 
Sbjct: 42  MVEADDDGIVTRVLEEIPHARGLVESGGAVGTSSMAEVEHFLSPTPDVE-------GIAE 94

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 95  GDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143


>gi|223985895|ref|ZP_03635932.1| hypothetical protein HOLDEFILI_03238 [Holdemania filiformis DSM
           12042]
 gi|223962136|gb|EEF66611.1| hypothetical protein HOLDEFILI_03238 [Holdemania filiformis DSM
           12042]
          Length = 171

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY ++     E++  E++          +   +   P + +   +      + R  FP
Sbjct: 1   MSWYFIETERFQEEQVKETLL---------NSQFDAFAPKKEMYFKKGDLTTLTLRFLFP 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-----EIEHIMNQVEAAVQRP 117
           G VLI    +   +    +        G+               + +  + Q+    +  
Sbjct: 52  GTVLIHDPASPPQFAKKLNAWLDRNQPGSEGIHREADAYFSLASDEKETLEQLLNEKKIL 111

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
             S      + + V  GP       ++ +   +    + + + G+  P+ L    +EK
Sbjct: 112 QFSTGIIRNKELHVLKGPLQGHEKEIQKIKRHQRLATLPIKLCGQTIPLILGLEVIEK 169


>gi|294674459|ref|YP_003575075.1| hypothetical protein PRU_1784 [Prevotella ruminicola 23]
 gi|294472582|gb|ADE81971.1| conserved domain protein [Prevotella ruminicola 23]
          Length = 321

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 65/183 (35%), Gaps = 20/183 (10%)

Query: 4   RWYIVQVYS-NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY++   S + E+K  +++                 +P +  V   + ++  +      
Sbjct: 10  KWYVLGCLSVHHEEKVRDALRKA---------GFRSHVPMKYEVKTVRRQEQRTMVPAIT 60

Query: 63  GYVLIKAVMTDKVYHTI----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
           G + ++A       +      +            ++   V D  +E  +       ++  
Sbjct: 61  GLIFVRATEEALKEYIRHKSRESIYMRKSTFSNKQDYLTVPDYAMERFIEFTNIRQEKIT 120

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT-PVELAYNQV 173
                 +  + GE++ +  G +  + G +     ++++ H+ V I G +   VEL    V
Sbjct: 121 YFKPEELNLKEGEKIRIKGGIYDGYEGTILRFKGKRNK-HLVVQIPGVIIAAVELEPELV 179

Query: 174 EKI 176
           E +
Sbjct: 180 EPL 182


>gi|298483361|ref|ZP_07001539.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298270490|gb|EFI12073.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 140

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 2/117 (1%)

Query: 46  VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105
           +     R+   +    P  V +     +++      T      +     P+ + D ++  
Sbjct: 1   MHQWSDRRKMVDTVLLPMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMAR 60

Query: 106 IMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
               ++ + +           GE+V V  GP +   G +  V   KS++ V + + G
Sbjct: 61  FRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 116


>gi|70607204|ref|YP_256074.1| transcription antitermination protein NusG [Sulfolobus
           acidocaldarius DSM 639]
 gi|140606|sp|P27341|NUSG_SULAC RecName: Full=Putative transcription antitermination protein nusG
 gi|99272|pir||S16484 hypothetical protein 3 - Sulfolobus solfataricus
 gi|48885|emb|CAA41431.1| unnamed protein product [Sulfolobus solfataricus]
 gi|453445|emb|CAA54645.1| unnamed protein product [Sulfolobus acidocaldarius]
 gi|68567852|gb|AAY80781.1| NusG [Sulfolobus acidocaldarius DSM 639]
 gi|1095513|prf||2109236H ORF
          Length = 152

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y+++V    E      +  R+  + ++  +  + +P                     GYV
Sbjct: 10  YVLRVTGGQEINVALILEERIKTNNINE-IFSVVVP-----------------PNIKGYV 51

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     V         V G                      V   V + V+    + 
Sbjct: 52  ILEATGPHVVKLISSGIRHVKGVAHG------------LIQKEDVTKFVSKSVALPAVKE 99

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G+ V V  GPF      V  V+  K+ V + ++       V +   QV+ +
Sbjct: 100 GDLVEVISGPFRGMQAQVVRVESTKNEVVLNILESSYPVQVTVPLEQVKPV 150


>gi|110667210|ref|YP_657021.1| transcription antitermination protein NusG [Haloquadratum walsbyi
           DSM 16790]
 gi|109624957|emb|CAJ51370.1| transcription antitermination protein homolog [Haloquadratum
           walsbyi DSM 16790]
          Length = 150

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  ++ E+   + I  R      +  +  +  P                      YV
Sbjct: 4   FAVKTTASQERTVADMIATRE-----EPDIHAVLAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           ++++     +   +++ P   G + +G      T +E+EH ++                 
Sbjct: 42  MVESDSNAAISRVLEEIPHARGLVKSGGQAGKSTIAEVEHFLSPTPDVE-------GIAE 94

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 95  GDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143


>gi|329964892|ref|ZP_08301900.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328524533|gb|EGF51601.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 181

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 11/159 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY  +V      K  E I   L + G++  +   T+  ER    +   K       F  
Sbjct: 9   HWYAFKV---FYNKVFE-IEELLKKDGIETFIPCETVIVERGEVKKSICKPVIASLLFFR 64

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPVS 119
               +     +    ++        +G  + P  + + E+   M    +  Q       S
Sbjct: 65  --STEQQALHQQQCLLERVILYTRLVGWQKLPFAIPEREMNLFMLVATSGEQGLEYLCDS 122

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              + +G+ V V DGPF    G +  +     R+ V + 
Sbjct: 123 PRDYRIGQHVSVIDGPFKGAEGYIHRIKG-NRRLIVAIE 160


>gi|262172003|ref|ZP_06039681.1| transcriptional activator RfaH [Vibrio mimicus MB-451]
 gi|261893079|gb|EEY39065.1| transcriptional activator RfaH [Vibrio mimicus MB-451]
          Length = 121

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 55  NSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             +   FP Y+ ++    D   + T++ T  V+ F+  G +P  +    I   + Q++  
Sbjct: 1   MVQEPLFPSYMFVRFDFEDGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCE 59

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
             +  +    E G+ V V+ G FA    I +  D +  R  + V +  +  P+ +    
Sbjct: 60  QLKGSARQLPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPMSIENTD 117


>gi|255010638|ref|ZP_05282764.1| putative transcriptional regulator Updx-like protein [Bacteroides
           fragilis 3_1_12]
 gi|313148449|ref|ZP_07810642.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137216|gb|EFR54576.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 179

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 19/163 (11%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY ++  YS  E    E +  R  ++          +P       R  RK+       
Sbjct: 7   KSWYALRITYSR-ELAFKEYLDSRGVKN---------FLPMRYEYVFRGERKIRKLVPVV 56

Query: 62  PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V + A  ++            P           P  + + ++   +       ++  
Sbjct: 57  HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRESCQPITIPEVQMRSFIAVAGNYDEQVV 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               S+V  + G+RV V+ G F    G    +  ++ RV V +
Sbjct: 117 YLDPSAVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158


>gi|218132130|ref|ZP_03460934.1| hypothetical protein BACEGG_03758 [Bacteroides eggerthii DSM 20697]
 gi|217985674|gb|EEC52016.1| hypothetical protein BACEGG_03758 [Bacteroides eggerthii DSM 20697]
          Length = 178

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  AV  +G             +  +P +  V+V+KG+KV          
Sbjct: 10  WYAMRATYRREPDAVRLLGKE---------NMDCFVPMQYKVTVKKGKKVRILVPVIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  +       K T               + D+E+   +        +        
Sbjct: 61  IFVHACPSALKRVKSKVTYLQYITDTRSGEKIIIPDNEMRRFIAVAGTYSDQLLYFQPEE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           V    G +V ++ G F    GI   V   + R  V + I G
Sbjct: 121 VNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVIEIQG 160


>gi|319901772|ref|YP_004161500.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319416803|gb|ADV43914.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
          Length = 178

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 +P +  VS+R+GRKV +        
Sbjct: 10  WYAMRATYRREPDAMRLLEKE---------QIGCFVPMQYKVSLRRGRKVRALVPVVHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A+ ++      + +               + D E+   +                 
Sbjct: 61  LFVHALPSELKRVKSQVSYLQYITDTRSGRKIIIPDHEMRRFIAVAGTYNDHLLYFRPED 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V V+ G F    GI   V   + R  V V I G
Sbjct: 121 LNLSKGTKVRVTGGDFEGQEGIFLKVKGARDR-RVVVQIQG 160


>gi|313127228|ref|YP_004037498.1| LSU ribosomal protein l24a [Halogeometricum borinquense DSM 11551]
 gi|312293593|gb|ADQ68053.1| LSU ribosomal protein L24A [Halogeometricum borinquense DSM 11551]
          Length = 151

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 31/169 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  E+   + I  R         +  +  P                      YV
Sbjct: 7   FAVKTTARQEQTVADMIATREEAE-----IHAVLAPDS-----------------LTSYV 44

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     +   +++ P   G +G G+  S + + E           +           
Sbjct: 45  MVEADNNAVINRVLEEIPHARGLVGDGQATSSMAEVEH---------FLSPTPDVEGIAE 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 96  GDIVELVAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 144


>gi|218672066|ref|ZP_03521735.1| transcription antitermination protein NusG [Rhizobium etli GR56]
          Length = 31

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           +DEE+SR+ VEV IFGR TPVEL Y QVEK+
Sbjct: 1   MDEERSRLKVEVSIFGRATPVELEYAQVEKV 31


>gi|317480580|ref|ZP_07939669.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316903273|gb|EFV25138.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 244

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 21/166 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY ++     EKKA + I                  P+   V +  G++   E    P 
Sbjct: 69  HWYALRTTYGREKKAYDYII---------SKGGTAFYPTLSTVKLVDGKRKTVEESRIPN 119

Query: 64  YVLIKAVMTDKVYHTIKDT-------PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
                    +       +              +G    P  + D++IE +    +A    
Sbjct: 120 LFFAYGTEEEIKSFVYDNVNLHYLRFYYRHFHIGNKIEPLIIPDNQIESLRIICKADADD 179

Query: 117 PVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            + S      F+ G+ V + +G F    GIV      + RV + + 
Sbjct: 180 IIVSTDEVQKFQKGQAVRIVEGKFKGVTGIVARYQG-QQRVGIVID 224


>gi|319901939|ref|YP_004161667.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319902283|ref|YP_004162011.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319902419|ref|YP_004162147.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319416970|gb|ADV44081.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319417314|gb|ADV44425.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319417450|gb|ADV44561.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
          Length = 178

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +            +    +P +  VS+R+GRKV +        
Sbjct: 10  WYAMRATYRREPDAMRLLEKE--------QIG-CFVPMQYKVSLRRGRKVRALVPVVHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A+ +       + +               + D E++  +                 
Sbjct: 61  LFVHALPSALKRVKSQVSYLQYITDTRSGRKIIIPDHEMQRFIAVAGTYNDHLLYFRPED 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V V+ G F    GI   V   + R  V V I G
Sbjct: 121 LNLSKGTKVRVTGGDFEGQEGIFLKVKGARDR-RVVVQIQG 160


>gi|126738215|ref|ZP_01753936.1| hypothetical protein RSK20926_06762 [Roseobacter sp. SK209-2-6]
 gi|126720712|gb|EBA17417.1| hypothetical protein RSK20926_06762 [Roseobacter sp. SK209-2-6]
          Length = 202

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 18/181 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS---VRKGRKVNSERRF 60
           RW++++V    E +    +            V E  +P+ +          RK+   ++ 
Sbjct: 32  RWFVLKVQPMKEFEVETWLAH-------QEGVLEAWLPTNKAWRNQARGHRRKIQYRQKI 84

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            PGYV              + +   +  +            E    M ++   VQ+  + 
Sbjct: 85  APGYVFGCVERRVAWDLLKRRSNGKVLGVVGHNGRPLPVPKEQMRAMKKLPKIVQKIYAD 144

Query: 121 VF----FEVGERVCVS-DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
                    G++  +  DGP   +   V  V+       + V + G     +++  Q+E+
Sbjct: 145 AQSAKLVRPGDKARILDDGPMCDWVVDVTEVNG--GIAKILVPLLG-EREAQISMEQLER 201

Query: 176 I 176
           +
Sbjct: 202 L 202


>gi|253566342|ref|ZP_04843796.1| UpdY [Bacteroides sp. 3_2_5]
 gi|251945446|gb|EES85884.1| UpdY [Bacteroides sp. 3_2_5]
          Length = 179

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 19/163 (11%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY ++  YS  E    E +  R  R+          +P       R  RK+       
Sbjct: 7   KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56

Query: 62  PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V + A  ++            P           P  + + ++   +       ++  
Sbjct: 57  HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               S V  + G+RV V+ G F    G    +  ++ RV V +
Sbjct: 117 YLDPSVVSMKRGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158


>gi|317474033|ref|ZP_07933312.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909875|gb|EFV31550.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 178

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  AV  +G             +  +P +  V+V+KG+KV          
Sbjct: 10  WYAMRATYRREPDAVRLLGKE---------NMDCFVPMQYKVTVKKGKKVRILVPVIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  +       K T               + D+E+   +        +        
Sbjct: 61  IFVHACPSTLKRVKSKVTYLQYITDTRSGEKIIIPDNEMRRFIAVAGTYSDQLLYFQPEE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           V    G +V ++ G F    GI   V   + R  V + I G
Sbjct: 121 VNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVIEIQG 160


>gi|301310806|ref|ZP_07216740.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300831206|gb|EFK61842.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 370

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          ++    K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV + A   +                   G       ++D E++ +     +
Sbjct: 83  TKRPLLYNYVFVHASEDEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPF      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193


>gi|53714952|ref|YP_100944.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           fragilis YCH46]
 gi|52217817|dbj|BAD50410.1| putative transcriptional regulator UpxY homolog [Bacteroides
           fragilis YCH46]
 gi|301164392|emb|CBW23950.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis 638R]
          Length = 208

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 19/164 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V+V  + E    E +         D    E  IP      V+  R+V          
Sbjct: 38  WYAVRVTYSRELALKEYL---------DGECIENFIPMHYEYIVKNERRVRKLVPAVHNL 88

Query: 65  VLIKA--VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-----P 117
           V I++     D++   +  T  +   +        V  +        V  +  +      
Sbjct: 89  VFIRSSRERIDRIKDEMGMTLPIRYIMDRESRQPIVVPTSQMRSFMAVAGSYDQQLVYLE 148

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            S+V F  G+RV V+ G FA   G    V  ++    V V I G
Sbjct: 149 PSAVAFRKGQRVRVTGGIFAGVEGEFIRVKNDR---RVMVSIQG 189


>gi|45358997|ref|NP_988554.1| transcription antitermination protein NusG [Methanococcus
           maripaludis S2]
 gi|45047872|emb|CAF30990.1| LSU ribosomal protein L24A [Methanococcus maripaludis S2]
          Length = 146

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  EK   ES+  R  +  L+       + S                    GY+
Sbjct: 3   FAVRTTTGQEKNVAESLASRAEKENLE-------VFSILATE------------DLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           LI+A     +   ++ + KV G +      + V + +      ++   + +         
Sbjct: 44  LIEAANKGALDELVRKSFKVKGIVPG---ETSVNELDHLLTPTKIIEHIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  + +E++      P+ +   QV KI+
Sbjct: 92  GDVVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGIEQV-KII 142


>gi|255011343|ref|ZP_05283469.1| putative transcriptional regulator Updx-like protein [Bacteroides
           fragilis 3_1_12]
 gi|313149155|ref|ZP_07811348.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137922|gb|EFR55282.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 179

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 19/163 (11%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY ++  YS  E    E +  R  ++          +P       R  RK+       
Sbjct: 7   KSWYALRITYSR-ELAFKEYLDSRGVKN---------FLPMRYEYVFRGERKIRKLVPVV 56

Query: 62  PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V + A  ++            P           P  + + ++   +       ++  
Sbjct: 57  HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               S+V  + G+RV V+ G F    G    +  ++ RV V +
Sbjct: 117 YLDPSTVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158


>gi|146304396|ref|YP_001191712.1| transcription antitermination protein NusG [Metallosphaera sedula
           DSM 5348]
 gi|145702646|gb|ABP95788.1| LSU ribosomal protein L24A [Metallosphaera sedula DSM 5348]
          Length = 153

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 34/173 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+V    E      +  R+  +G+   V  I +P                     GYV
Sbjct: 10  YAVKVTGGQEISVAIMLEERIKTNGIGD-VYSIIVP-----------------PGLKGYV 51

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           ++++     V   I     V G                    + +   V +  +    + 
Sbjct: 52  IVESSGPHVVKFIIAGIRHVRGVAPG------------LVPKDDIMKMVSKKQTGPSIKT 99

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176
           G+ V V  GPF      V + + ++    V + I     P  V +  +Q+  +
Sbjct: 100 GDMVEVVSGPFRGMQAQVMSYNADRG--EVVLNILESAFPLQVTIPVDQIRPV 150


>gi|124028448|ref|YP_001013768.1| transcription antitermination protein NusG [Hyperthermus butylicus
           DSM 5456]
 gi|123979142|gb|ABM81423.1| transcription antiterminator [Hyperthermus butylicus DSM 5456]
          Length = 172

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 31/155 (20%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           PR Y V+  +  E      +  R     +   +  I +P                     
Sbjct: 23  PRLYAVRTVAGREIDVALIMEQRARDQNMP--IYAIIVP-----------------PQIK 63

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV+++        + I+      G +        V                        
Sbjct: 64  GYVIVETPAAFYATNAIQGIRYAKGVVPGVLRYEDVERLLKPKA------------VIET 111

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            + G+ V +  GPF    G V  V   K+ V + V
Sbjct: 112 LKPGDIVEIISGPFRGMKGQVVRVSPSKNEVVLNV 146


>gi|150402603|ref|YP_001329897.1| transcription antitermination protein NusG [Methanococcus
           maripaludis C7]
 gi|150033633|gb|ABR65746.1| NusG antitermination factor [Methanococcus maripaludis C7]
          Length = 146

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  EK   ES+  +  +  L+       + S                    GY+
Sbjct: 3   FAVRTTTGQEKNVAESLASKAEKENLE-------VFSILATE------------DLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           LI+A     +   ++ + KV G +      + V++ +      ++   + +         
Sbjct: 44  LIEAANKGALDDLVRKSFKVKGIVPG---ETSVSELDHLLTPTKIIEHIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  V +E++      P+ +   QV KIV
Sbjct: 92  GDIVELVGGPFKGERARVTRVDKHKEEVTLELIDAAVPIPITVGVEQV-KIV 142


>gi|53715209|ref|YP_101201.1| putative transcriptional regulator Updx-like protein [Bacteroides
           fragilis YCH46]
 gi|265767038|ref|ZP_06094867.1| UpdY [Bacteroides sp. 2_1_16]
 gi|52218074|dbj|BAD50667.1| putative transcriptional regulator Updx homolog [Bacteroides
           fragilis YCH46]
 gi|263253415|gb|EEZ24891.1| UpdY [Bacteroides sp. 2_1_16]
          Length = 179

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 19/163 (11%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY ++  YS  E    E +  R  R+          +P       R  RK+       
Sbjct: 7   KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56

Query: 62  PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V + A  ++            P           P  + + ++   +       ++  
Sbjct: 57  HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               S V  + G+RV V+ G F    G    +  ++ RV V +
Sbjct: 117 YLDPSVVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158


>gi|302794226|ref|XP_002978877.1| hypothetical protein SELMODRAFT_418636 [Selaginella moellendorffii]
 gi|300153195|gb|EFJ19834.1| hypothetical protein SELMODRAFT_418636 [Selaginella moellendorffii]
          Length = 332

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 57/227 (25%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRS----GLDHLVTEITIPSERVVSVRKGRKVNS 56
           M  +WY ++V++N E +++E++   L         + +V    +P  +V S     +   
Sbjct: 85  MGMQWYTLRVFTNNEAESMEALRSTLEAEFPDAKFEGVVNGFLLPRCKVWSPIIPTESVV 144

Query: 57  ERR-------FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIE---- 104
             +          G++ ++ V+   VY  + +   V  F+G          D+++     
Sbjct: 145 RGKSRFAMKAMLRGHIFLRCVLEAPVYRHVMNERSVFCFVGAFPYKMKAGYDTKMMKGGY 204

Query: 105 ----------------------------------------HIMNQVEAAVQRPVSSVFFE 124
                                                    ++ +V+             
Sbjct: 205 PDAHIPAPVPSYQIEALREEAATREREFKLEQQKKKASEDQVLLEVKEVDDLEQRQGHLR 264

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           VG+ V V  G + +F G +        +V + + +FG  T +E+  +
Sbjct: 265 VGDMVAVISGAYQNFQGTILEFLPA-GKVKIVLPVFGTDTEIEVDMD 310


>gi|255573929|ref|XP_002527883.1| hypothetical protein RCOM_0085990 [Ricinus communis]
 gi|223532734|gb|EEF34514.1| hypothetical protein RCOM_0085990 [Ricinus communis]
          Length = 127

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           G  V V  G FA F G +K ++ +  +  V   +FG+ T +EL   ++
Sbjct: 75  GSTVRVVSGTFAEFVGTLKKLNRKTGKATVGFTLFGKETLIELDRREI 122


>gi|150006795|ref|YP_001301538.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|150008233|ref|YP_001302976.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149935219|gb|ABR41916.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149936657|gb|ABR43354.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 370

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          ++    K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV + A   +                   G       ++D E++ +     +
Sbjct: 83  TKRPLLYNYVFVHASENEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPF      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193


>gi|315180818|gb|ADT87732.1| transcriptional activator RfaH [Vibrio furnissii NCTC 11218]
          Length = 122

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%)

Query: 55  NSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             +   FP Y+ ++        + T++ T  V  F+  G  P  +    I   + Q+   
Sbjct: 1   MVKEPLFPSYMFVRFDFNQGPTFTTVRSTRGVTDFIRFGAEPKELQGDLIY-ELKQLSTH 59

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +     +     G+ V V  G F     I +  D E  R  + V +  +  P+ + 
Sbjct: 60  LDDVSDAKMPVRGQEVEVKSGQFCGLKAIYQQPDGET-RSIMLVKMLSQSVPMSIE 114


>gi|332085009|gb|EGI90191.1| transcriptional activator RfaH [Shigella dysenteriae 155-74]
          Length = 131

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 47  SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
            + +G++       FP Y+ ++         TI  T  V  F+  G +P+ V  + I  +
Sbjct: 6   KIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQL 65

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
                  +  P +      G++V +++G F  F  I    D E +R  + + +  +    
Sbjct: 66  SVYKPKDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKH 121

Query: 167 ELAYNQVEKI 176
            +   +  K+
Sbjct: 122 SVKNTEFRKL 131


>gi|302382487|ref|YP_003818310.1| NGN domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193115|gb|ADL00687.1| NGN domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 188

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W++V  + N EK A   +  +       H V    +P      +R G   +  R   P Y
Sbjct: 15  WFVVITHVNQEKLAKYQLERQ------GHAVYMPMVPPSPRARMRNGVPPSV-RPMIPRY 67

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGF----LGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
           + ++  +    +  I  T  V        G G  P  +    IE I  +    +      
Sbjct: 68  LFVQVDLDQPGWPAIYSTFGVSEVISSGTGEGRRPRAIPTRFIEEIRAREVNGLVILPEA 127

Query: 117 -----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                   +  F+ G+++    GP A +  + + +  + +R  V   + G
Sbjct: 128 RKAGPAPVACRFKKGDKLR-WHGPTADYEVVFQQM-VDGNRAEVVFTLMG 175


>gi|60683145|ref|YP_213289.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|18462480|gb|AAL72272.1|AF366394_2 UpdY [Bacteroides fragilis 638R]
 gi|60494579|emb|CAH09380.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|301164665|emb|CBW24224.1| putative transcriptional regulator [Bacteroides fragilis 638R]
          Length = 179

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 19/163 (11%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             WY ++  YS  E    E +  R  R+          +P       R  RK+       
Sbjct: 7   KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56

Query: 62  PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V + A  ++            P           P  + + ++   +       ++  
Sbjct: 57  HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               S V  + G+RV V+ G F    G    +  ++ RV V +
Sbjct: 117 YLDPSVVSMKRGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158


>gi|150007203|ref|YP_001301946.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149935627|gb|ABR42324.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 367

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          ++    K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           + +     YV + A   +                   G       ++D E++ +     +
Sbjct: 83  TRQPLLYNYVFVHASEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPF      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193


>gi|189466124|ref|ZP_03014909.1| hypothetical protein BACINT_02494 [Bacteroides intestinalis DSM
           17393]
 gi|189434388|gb|EDV03373.1| hypothetical protein BACINT_02494 [Bacteroides intestinalis DSM
           17393]
          Length = 178

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 IP +  +SV+KG+KV          
Sbjct: 10  WYAMRATYRRELDAMRLLEKEK---------LGCFIPMQYKISVKKGKKVRVLMPVIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           V + A  ++      +                 + D++++  +                 
Sbjct: 61  VFVHACPSEVKRVKSQINYLQYITDTRSGQKIIIPDNDMQRFIAVAGTYNDHLLYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G RV +  G F    G+   V   + R  V + I G
Sbjct: 121 LNLSKGTRVRIIGGDFEGQEGLFLKVKGARDR-RVVIEIQG 160


>gi|294660581|ref|NP_853429.2| transcription termination factor NusG [Mycoplasma gallisepticum
           str. R(low)]
 gi|7109682|gb|AAF36753.1| transcription antitermination factor NusG [Mycoplasma
           gallisepticum]
 gi|284812244|gb|AAP56997.2| transcription termination factor NusG [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930926|gb|ADC30865.1| transcription termination factor NusG [Mycoplasma gallisepticum
           str. R(high)]
 gi|284931682|gb|ADC31620.1| transcription termination factor NusG [Mycoplasma gallisepticum
           str. F]
          Length = 267

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 34/165 (20%)

Query: 1   MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------- 49
           M+ +    WYI    +  E   ++++  ++     +  + +  +   R V          
Sbjct: 1   MSKKSTAQWYIATTTNGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNNP 60

Query: 50  -----------------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVI 86
                                    +   ++   +PGY+ IK  M +  +  +++T  + 
Sbjct: 61  THNIPATMRNSTYIKWVTVDNGVYKKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNIT 120

Query: 87  GFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131
           G +G+    +          ++ +          +       + +
Sbjct: 121 GIVGSSGKGAKPIPISSSEELDLLNGESFDQNYRIVITPNAIIEM 165



 Score = 41.6 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +    ++   ++  +VG  V ++ G ++  +G +  +  +     V+V I G++  V+L 
Sbjct: 201 MSTEKEQVDEAIELKVGHMVDINSGDYSGLSGQISRI-IDNDEYIVDVQILGKLVSVKLN 259

Query: 170 YNQVE 174
             Q++
Sbjct: 260 KKQLK 264


>gi|255011104|ref|ZP_05283230.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           fragilis 3_1_12]
          Length = 208

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY V+V  + E      +              E  IP      V+  R+V         
Sbjct: 37  HWYAVRVTYSRELSLKTYLDSES---------IENFIPMRYEYIVKNERRVRKLVPAVHN 87

Query: 64  YVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
            V +++    +           P           P  V DS++   M    +  Q+    
Sbjct: 88  LVFVRSCRERIDRIKEEMGVSLPIRYIMDRESRQPIVVPDSQMRSFMAVAGSYEQQLVYL 147

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             S+V F  G+RV V+ G FA   G    V  ++    V V I G
Sbjct: 148 EPSAVAFRKGQRVRVTGGLFAGVEGEFIRVKNDR---RVMVSIQG 189


>gi|149003855|ref|ZP_01828683.1| transcription antitermination protein NusG [Streptococcus
          pneumoniae SP14-BS69]
 gi|147758189|gb|EDK65192.1| transcription antitermination protein NusG [Streptococcus
          pneumoniae SP14-BS69]
          Length = 63

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 3  PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
            W+++Q YS  E K  E++  R     +   +  + IP++ V   +  R+  
Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKMEREKK 63


>gi|298375194|ref|ZP_06985151.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298267694|gb|EFI09350.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 370

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          ++    K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV + A   +                   G       ++D E++ +     +
Sbjct: 83  TKRPLLYNYVFVHASEDEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPF      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193


>gi|303244500|ref|ZP_07330835.1| NusG antitermination factor [Methanothermococcus okinawensis IH1]
 gi|302485198|gb|EFL48127.1| NusG antitermination factor [Methanothermococcus okinawensis IH1]
          Length = 146

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++  +  EK   E +  R  +  +D                              GY+
Sbjct: 3   FAIRTTTGQEKNVAEFLASRAEKEKID-------------------IYSILATEDLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     V   ++ T KV G +        + + E      ++  ++ +         
Sbjct: 44  LVEAPNKGAVEDLVRKTFKVKGIVPG---EISIDELEHLLSPTKIIESIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF     IV  VD+ K  + +E++      P+ +   QV KIV
Sbjct: 92  GDVVELVAGPFKGEKAIVTRVDKHKEEITLELMEAAVPIPITVGIEQV-KIV 142


>gi|150401434|ref|YP_001325200.1| transcription antitermination protein NusG [Methanococcus aeolicus
           Nankai-3]
 gi|150014137|gb|ABR56588.1| NusG antitermination factor [Methanococcus aeolicus Nankai-3]
          Length = 146

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++  +  E    E +  +  +  ++                              GY+
Sbjct: 3   YAIRTTTGQELNVAEFLAAKAEKEDIE-------------------IYSILATEDLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     +   I+ T KV G +      + V + E      ++   + +         
Sbjct: 44  LVEAPNMGALEDLIRKTFKVKGIVQG---ETSVDELEHLLTPTKIIETIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  + +E++      P+ +   QV KI+
Sbjct: 92  GDTVELVAGPFKGERARVIRVDKHKEEITLELMDAAVPIPITVGIEQV-KII 142


>gi|126737096|ref|ZP_01752831.1| transcription antitermination protein NusG [Roseobacter sp.
           SK209-2-6]
 gi|126721681|gb|EBA18384.1| transcription antitermination protein NusG [Roseobacter sp.
           SK209-2-6]
          Length = 204

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 18/180 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS---VRKGRKVNSERRFF 61
           W++++V    E +    +       G    V E  +P+ +          RKV   ++  
Sbjct: 33  WFVLKVQPMKEFEVEMWL-------GQQEGVLEAWLPTNKAWRNQARGHRRKVQYRQKIA 85

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           PGYV              + +   +  +            E    M ++   VQ+  +  
Sbjct: 86  PGYVFACVERRIAWDLLQRRSNGKVLGVVGYNGRPLPVPEEQMRAMKKLPKIVQKIYAEA 145

Query: 122 F----FEVGERVCVSD-GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
                   G++  + D GP   +   V  V+       + V + G     +++  Q+E+I
Sbjct: 146 QSVKLVRPGDKARILDDGPMCDWVVDVTEVNG--GIAKILVPLLG-EREAQISMEQLERI 202


>gi|167755356|ref|ZP_02427483.1| hypothetical protein CLORAM_00870 [Clostridium ramosum DSM 1402]
 gi|167704295|gb|EDS18874.1| hypothetical protein CLORAM_00870 [Clostridium ramosum DSM 1402]
          Length = 166

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 14/172 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++      E K    +              +  IP       R+  K N+ +  
Sbjct: 1   MKDNWYVLFALVAKENKLCSVLRR---------KGLDAFIPKIEYY--RRDIKGNTLKML 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGY+ +++ M    +  +                ++       E   + N++  +    
Sbjct: 50  FPGYIFVRSEMKQSDFDNLLYELGEQRDGLIKQLKDDGVTALRDEEIEMFNKLLNSEGIL 109

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
             S  F    +  V  GP   +   +  +D+      +++    R     L 
Sbjct: 110 EMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAVLDIEFLNRHILAGLE 161


>gi|281422967|ref|ZP_06253966.1| putative transcription termination factor NusG [Prevotella copri
           DSM 18205]
 gi|281402970|gb|EFB33650.1| putative transcription termination factor NusG [Prevotella copri
           DSM 18205]
          Length = 223

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER--VVSVRKGRKVNSERRFFP 62
           WY+  V  NCE +  +SI         +H+  +  IP  +   +  R  ++   E+ F  
Sbjct: 50  WYVAVVRVNCETRIADSIR---INLNHNHVWFDYWIPKVKVVYIDKRSNKRKVKEKLFLS 106

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121
            ++              +     +  +        + D  + +    VE   +   ++ V
Sbjct: 107 TFIFCNVSPRQLDKIRFRSDVYKMLTMPGQRKIYQIPDQVVANYRYFVENDEEPVTAAPV 166

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEK 150
             + G +V V  G        V++ + +K
Sbjct: 167 PLKKGIKVRVVAGSMKGVEAYVQSYNGKK 195


>gi|134045190|ref|YP_001096676.1| transcription antitermination protein NusG [Methanococcus
           maripaludis C5]
 gi|132662815|gb|ABO34461.1| LSU ribosomal protein L24A [Methanococcus maripaludis C5]
          Length = 146

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  EK   ES+  +  +  L+       + S                    GY+
Sbjct: 3   FAVRTTTGQEKNVAESLASKAEKENLE-------VFSILATE------------DLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           LI+A     +   ++ + KV G +      + V++ +      ++   + +         
Sbjct: 44  LIEAANKGALDDLVRKSFKVKGIVPG---ETSVSELDHLLTPTKIIEHIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  + +E++      P+ +   QV KIV
Sbjct: 92  GDIVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGVEQV-KIV 142


>gi|237734244|ref|ZP_04564725.1| nusG antitermination factor [Mollicutes bacterium D7]
 gi|229382804|gb|EEO32895.1| nusG antitermination factor [Coprobacillus sp. D7]
          Length = 166

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 14/172 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M   WY++      E K    +              +  IP       R+  K N+ +  
Sbjct: 1   MKDNWYVLFALVAKENKLCSVLRR---------KGLDAFIPKIEYY--RRDIKGNTLKML 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
           FPGY+ +++ M    +  +                ++       E   + N++  +    
Sbjct: 50  FPGYIFVRSEMKQSDFDNLLYELGEQRDGLIKQLKDDGVTALRDEEIEMFNKLLNSEGIL 109

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
             S  F    +  V  GP   +   +  +D+      +++    R     L 
Sbjct: 110 EMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAILDIEFLNRHILAGLE 161


>gi|160891859|ref|ZP_02072862.1| hypothetical protein BACUNI_04316 [Bacteroides uniformis ATCC 8492]
 gi|317480339|ref|ZP_07939440.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|156858337|gb|EDO51768.1| hypothetical protein BACUNI_04316 [Bacteroides uniformis ATCC 8492]
 gi|316903514|gb|EFV25367.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 200

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT-EITIPSERVVSVRKGRKVNSERRFF 61
             W+  +  S  E         R+    L+  +  E  +P+  V+S  K R+  S     
Sbjct: 28  KYWFAARTLSKQEFAVK----KRIENLNLEEGIDVECYLPTRTVISQLKYRRKRSVVPVA 83

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVS 119
            G + I A              +V        +   V   +       V           
Sbjct: 84  RGLIFIHATKQSACDIHNVYGVQVFYMKDFSTHSMLVVPDKQMQDFMFVMDLNPEGVCFD 143

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    VG++V V  G F+   G    +  E ++ +V + I G
Sbjct: 144 NEPLTVGKKVTVVKGEFSGIEG---EIATEANKTYVVIRITG 182


>gi|169350274|ref|ZP_02867212.1| hypothetical protein CLOSPI_01018 [Clostridium spiroforme DSM 1552]
 gi|169293057|gb|EDS75190.1| hypothetical protein CLOSPI_01018 [Clostridium spiroforme DSM 1552]
          Length = 165

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 11/173 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYI  V +    K V S+  +           E  +P +      + ++    +  +P
Sbjct: 1   MYWYIAHVKAGQASKLVGSLNKQ--------EDIEAFVPKKEQWYRARDKRTYVIKELYP 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
            YV IK+ +    +                            + +  + ++         
Sbjct: 53  DYVFIKSKLNKDKFDEKFKVFFRTIEGLIELLDYKDVYPLTLDEQSFLERLFDGGYVIKH 112

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           ++   +  R     GP       +  ++     V ++  IF     V +    
Sbjct: 113 TLGNIINSRFNAIKGPLIGLEDRIIKLNRHDRFVTLDCKIFNGKFNVAIEMVD 165


>gi|323692775|ref|ZP_08107003.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum
           WAL-14673]
 gi|323503217|gb|EGB19051.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum
           WAL-14673]
          Length = 187

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  +  E++ +  I   L R   +       +   + +    G      R  FPGY
Sbjct: 2   WYVIQTVTGKEEELMLFIRNILCRERYES----CFVIYAQWMKRLGGEWQIQVRPLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQRPVSS 120
           V I     +++Y  +K  PK    LGTG +       E E  +  +          P   
Sbjct: 58  VFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEEEKFLRMITGGSGEMADEPAIE 117

Query: 121 VFFEVGE-RVCVS------DGPFASFNGIV-------KNVDEEKSRVHVEVVIFGRV 163
                 +  V ++      DG   S  G +         ++  K    V+  + G  
Sbjct: 118 RMERADDATVKLTVVETELDGGIRSMEGALSCFASDDVRLNLHKRYAVVKTRMLGEE 174


>gi|224538594|ref|ZP_03679133.1| hypothetical protein BACCELL_03488 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519778|gb|EEF88883.1| hypothetical protein BACCELL_03488 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 185

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 19/164 (11%)

Query: 2   TPRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
              WY ++  YS         +   L ++ +++      IP       RK +++      
Sbjct: 11  EYHWYALRITYSR-----ELVLKEFLDKNNIEN-----FIPMRYEYVTRKEQRIRKLVPA 60

Query: 61  FPGYVLIKAVMTDKVYHTIKD---TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116
               V I +          ++    P         + P  V + ++ H +    +  Q+ 
Sbjct: 61  IHNLVFIYSTRKKIDEIKEENAVLLPLRYIMDRETKQPIIVPEIQMRHFIAIAGSYDQQV 120

Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              P +    + G+RV ++ G F    GI   V  ++ RV V +
Sbjct: 121 IYLPPTEYSMQKGDRVRITGGVFEGVEGIFVRVKGDR-RVVVSI 163


>gi|60682927|ref|YP_213071.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis NCTC 9343]
 gi|253566058|ref|ZP_04843512.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766805|ref|ZP_06094634.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60494361|emb|CAH09157.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis NCTC 9343]
 gi|251945162|gb|EES85600.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253182|gb|EEZ24658.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 179

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 19/164 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V+V  + E    E +         D    E  IP      V+  R+V          
Sbjct: 9   WYAVRVTYSRELALKEYL---------DGECIENFIPMHYEYIVKNERRVRKLVPAVHNL 59

Query: 65  VLIKA--VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-----P 117
           V I++     D++   +  T  +   +        V  +        V  +  +      
Sbjct: 60  VFIRSSRERIDRIKDEMGMTLPIRYIMDRESRQPIVVPTSQMRSFMAVAGSYDQQLVYLE 119

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            S+V F  G+RV V+ G FA   G    V  ++    V V I G
Sbjct: 120 PSAVAFRKGQRVRVTGGIFAGVEGEFIRVKNDR---RVMVSIQG 160


>gi|323483811|ref|ZP_08089190.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum
           WAL-14163]
 gi|323402896|gb|EGA95215.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum
           WAL-14163]
          Length = 187

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  +  E++ +  I   L R   +       +   + +    G      R  FPGY
Sbjct: 2   WYVIQTVTGKEEELMLFIRNILCRERYES----CFVIYAQWMKRLGGEWQIQVRPLFPGY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQRPVSS 120
           V I     +++Y  +K  PK    LGTG +       E E  +  +          P   
Sbjct: 58  VFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEEEKFLRMITGGSGEMADEPAIE 117

Query: 121 VFFEVGE-RVCVS------DGPFASFNGIV-------KNVDEEKSRVHVEVVIFGRV 163
                 +  V ++      DG   S  G +         ++  K    V+  + G  
Sbjct: 118 RMERADDATVKLTVVETKLDGGIRSMEGALSCFASDDVRLNLHKRYAVVKTRMLGEE 174


>gi|159905622|ref|YP_001549284.1| transcription antitermination protein NusG [Methanococcus
           maripaludis C6]
 gi|159887115|gb|ABX02052.1| NusG antitermination factor [Methanococcus maripaludis C6]
          Length = 146

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  EK   ES+  +  +  L+       + S                    GY+
Sbjct: 3   FAVRTTTGQEKNVAESLASKAEKENLE-------VFSILATE------------DLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           LI+A     +   ++ + KV G +      + V++ +      ++   + +         
Sbjct: 44  LIEAANKGALDELVRKSFKVKGIVPG---ETSVSELDHLLTPTKIIEHIDK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  + +E++      P+ +   QV KIV
Sbjct: 92  GDIVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGVEQV-KIV 142


>gi|301310514|ref|ZP_07216453.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300832088|gb|EFK62719.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 196

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          +K    K ++    R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAGGGRDKISPSKGLDVELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV I A   +                   G       ++D E+E +     +
Sbjct: 83  TKRPLLYNYVFIHASENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMETLRWVAAS 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPFA     V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193


>gi|224539260|ref|ZP_03679799.1| hypothetical protein BACCELL_04162 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519109|gb|EEF88214.1| hypothetical protein BACCELL_04162 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 190

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 17/162 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ V+V  + E      +              E  IP    + ++ G++V         
Sbjct: 18  HWFAVRVSYSRELTLKSILDKE---------NIESFIPMCYGMVMKGGKRVRRLVPAIHN 68

Query: 64  YVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            V + +     D +   ++ T  +   +        V           V  +   P+  +
Sbjct: 69  LVFVHSTRKRIDALKDELEGTMPIRFIMNREHCRPVVIPDVQMRSFILVAGSHDEPILYM 128

Query: 122 FFEV-----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                    G++V ++DG F    G    +  ++ RV V + 
Sbjct: 129 EAAELNLVKGQKVRITDGVFKGVIGEFVRIRHDR-RVVVNIE 169


>gi|297184778|gb|ADI20888.1| hypothetical protein [uncultured gamma proteobacterium
          EB080_L93H08]
          Length = 48

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV 35
          M  +WY++QVYSN EKK  +++  R+   GL   +
Sbjct: 1  MEHQWYVLQVYSNYEKKVQKTLEERIKIKGLSSSI 35


>gi|452791|emb|CAA51490.1| nusG protein [Synechocystis sp. PCC 6803]
          Length = 29

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175
           E+S++   + IFGR TPVEL + QVEK
Sbjct: 1   ERSKLKALLSIFGRETPVELEFTQVEK 27


>gi|218281061|ref|ZP_03487628.1| hypothetical protein EUBIFOR_00187 [Eubacterium biforme DSM 3989]
 gi|218217683|gb|EEC91221.1| hypothetical protein EUBIFOR_00187 [Eubacterium biforme DSM 3989]
          Length = 166

 Score = 50.8 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 13/162 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY++    + E++  + +         ++       P          +        F G
Sbjct: 5   HWYVLLTIRSKEEEVCKYLN--------ENDGIYAFSPKMEFYHRVSKQIQQRSL--FGG 54

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP---VTDSEIEHIMNQVEAAVQRPVSS 120
           YV + + ++      I     +                   E   I+N +    +    S
Sbjct: 55  YVFVVSKLSQVEVDAIFKKFPLQSVFIHELKYEEEVSALTDEEIRILNMLLDDEKVLRMS 114

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
               V  ++ V+ GP  + +  +   D+      + +    +
Sbjct: 115 YGELVNNKIHVTQGPLKNMDDYIVKYDKHNRLATLNLSFLNQ 156


>gi|161527894|ref|YP_001581720.1| NusG antitermination factor [Nitrosopumilus maritimus SCM1]
 gi|160339195|gb|ABX12282.1| NusG antitermination factor [Nitrosopumilus maritimus SCM1]
          Length = 152

 Score = 50.8 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 31/169 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++     EK  +  +  + + + ++                              GYV
Sbjct: 10  FAIRTTGGQEKVVMRLLEAKANANQINIQ-------------------SVFWVNDLKGYV 50

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +I+A+     Y  ++    + G L                    +E  + +  +     V
Sbjct: 51  VIEAINPSDAYMAVEGVRHIRGQLRGELEFKD------------IEGYLVKKSTVSTLAV 98

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              V ++ GPF      +  +D +K    V ++      PV +  N ++
Sbjct: 99  DNVVEITGGPFKGMKATITRIDSDKEEATVVLLDASYQLPVTVDANYLK 147


>gi|167762938|ref|ZP_02435065.1| hypothetical protein BACSTE_01302 [Bacteroides stercoris ATCC
           43183]
 gi|167699278|gb|EDS15857.1| hypothetical protein BACSTE_01302 [Bacteroides stercoris ATCC
           43183]
          Length = 183

 Score = 50.8 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 16/145 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY V+ ++  E K  + +  R              +P   V   ++G+            
Sbjct: 16  WYAVRTFNCQELKISDFLKERKK---------VHFVPMTYVEKEKEGKTRKMLVPVVHNL 66

Query: 65  VLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP---- 117
           V ++   + K    +    + P  +      ++P  + D ++       +   +      
Sbjct: 67  VFLQKNESRKATLAMLKECNVPFSVLCDKETKHPCEIPDKQMTEFRILCDPDFKDTLYIT 126

Query: 118 VSSVFFEVGERVCVSDGPFASFNGI 142
                 + G+ V +  GPFA   G 
Sbjct: 127 HEEAEAKPGKNVRIIHGPFAGITGK 151


>gi|302348744|ref|YP_003816382.1| Putative transcription antitermination protein nusG [Acidilobus
           saccharovorans 345-15]
 gi|302329156|gb|ADL19351.1| Putative transcription antitermination protein nusG [Acidilobus
           saccharovorans 345-15]
          Length = 172

 Score = 50.8 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 33/173 (19%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           R+Y + V    E++ V  +G R     LD                    +         G
Sbjct: 21  RFYAIYVTGGYEERVVAVLGERARTLQLD-------------------VRSIVYSPDLKG 61

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
            V ++      +Y+ I+    +             T   ++ I+  V+     P ++   
Sbjct: 62  VVFVEVGDVKDLYYLIRGVRNI--------KRRRPTMVSVDDILKLVKP----PAAAEPI 109

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G+ + V  GPF    G +  V   K  V V ++       V +  +QV+ +
Sbjct: 110 AKGDVIQVIGGPFKGMRGRIIEV--RKGEVDVNLLEGDSKIIVTIPIDQVKPV 160


>gi|317478955|ref|ZP_07938101.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316904864|gb|EFV26672.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 178

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 IP +  + ++KG+KV +        
Sbjct: 10  WYAMRATYRREPDAMHLLKKE---------NLGCFIPMQYKICIKKGKKVRALVPVVHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  +D      + T               V DS+++  +                 
Sbjct: 61  LFVHARPSDVQRVKSQVTYLQYITDTRSGQKIIVPDSQMQRFIAVSGTYDDHLLYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 121 LNLSKGTKVRITGGEFEGQEGVFLKVKGARDR-RVVIEIQG 160


>gi|160888139|ref|ZP_02069142.1| hypothetical protein BACUNI_00547 [Bacteroides uniformis ATCC 8492]
 gi|160890547|ref|ZP_02071550.1| hypothetical protein BACUNI_02989 [Bacteroides uniformis ATCC 8492]
 gi|156860279|gb|EDO53710.1| hypothetical protein BACUNI_02989 [Bacteroides uniformis ATCC 8492]
 gi|156862274|gb|EDO55705.1| hypothetical protein BACUNI_00547 [Bacteroides uniformis ATCC 8492]
          Length = 178

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 IP +  + ++KG+KV +        
Sbjct: 10  WYAMRATYRREPDAMHLLKKE---------NLGCFIPMQYKICIKKGKKVRALVPVVHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  +D      + T               V D +++  +                 
Sbjct: 61  LFVHARPSDVQRVKSQVTYLQYITDTRSGQKIIVPDGQMQRFIAVSGTYDDHLLYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 121 LNLSKGTKVRITGGEFEGQEGVFLKVKGARDR-RVVIEIQG 160


>gi|217073910|gb|ACJ85315.1| unknown [Medicago truncatula]
          Length = 329

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 24/64 (37%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +               G  V +  G F  F G +K ++ +     V   +FG+   V+L 
Sbjct: 261 ITEEASSAKKKPKLVTGSTVQIISGSFLGFAGTLKKLNSKTKMATVHFTMFGKENIVDLD 320

Query: 170 YNQV 173
            +++
Sbjct: 321 VSEI 324


>gi|53712096|ref|YP_098088.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           fragilis YCH46]
 gi|60680287|ref|YP_210431.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|253563867|ref|ZP_04841324.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265765431|ref|ZP_06093706.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52214961|dbj|BAD47554.1| putative transcriptional regulator UpxY homolog [Bacteroides
           fragilis YCH46]
 gi|60491721|emb|CAH06477.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|251947643|gb|EES87925.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263254815|gb|EEZ26249.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301161815|emb|CBW21356.1| putative transcriptional regulator [Bacteroides fragilis 638R]
          Length = 178

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++     E  A+  +                 +P +  +S++KG+KV          
Sbjct: 10  WFAMRATYRRETDAMRLLAKE---------NLGCFVPMQYKISIKKGKKVRVLVPIIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + I A  ++                        + D+E++  +                 
Sbjct: 61  IFIHACPSEVKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 121 LNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 160


>gi|330834457|ref|YP_004409185.1| transcription antitermination protein NusG [Metallosphaera cuprina
           Ar-4]
 gi|329566596|gb|AEB94701.1| transcription antitermination protein NusG [Metallosphaera cuprina
           Ar-4]
          Length = 153

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 34/173 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++V    E      +  R+  +G++  V  I +P                     GY+
Sbjct: 10  YAIKVTGGQEMSVAIMLEERIKTNGINE-VFSIIVP-----------------PALKGYL 51

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           ++++     V   I     V G                      +   V +  +    + 
Sbjct: 52  IVESSGPHVVKLIISGIRHVRGIAPG------------LVPKTDIMNMVSKKPTGPAIKT 99

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176
           G+ V V  GPF      V   + E+    V + I     P  V +  +QV  +
Sbjct: 100 GDMVEVVSGPFRGMQAQVMGYNAERG--EVVLNILESAFPLQVTIPVDQVRTV 150


>gi|260769077|ref|ZP_05878011.1| transcriptional activator RfaH [Vibrio furnissii CIP 102972]
 gi|260617107|gb|EEX42292.1| transcriptional activator RfaH [Vibrio furnissii CIP 102972]
          Length = 122

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%)

Query: 55  NSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             +   FP Y+ ++        + T++ T  V  F+  G  P  +    I   + Q+   
Sbjct: 1   MVKEPLFPSYMFVRFDFNQGPTFTTVRSTRGVTDFIRFGAEPKELQGDLIY-ELKQLSTH 59

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +     +     G+ + V  G F     I +  D E  R  + V +  +  P+ + 
Sbjct: 60  LDDVSDAKMPVRGQEIEVKSGQFCGLKAIYQQPDGET-RSIMLVKMLSQSVPMSIE 114


>gi|317479971|ref|ZP_07939086.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316903916|gb|EFV25755.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 176

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M      W+ ++     E +A+  +    +  G         IP +  +S+R+GRKV + 
Sbjct: 1   MDKETEVWFAMRATYRRELEAMHLLEK--ANLG-------CFIPMQYKISIRRGRKVRAL 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116
                  V + A  ++      + T               + D +++  +          
Sbjct: 52  VPVIRNLVFVHARPSEVQRFKSQITYLQYITDTRSGQKIIIPDHDMQRFIAVAGTYNDHL 111

Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                  +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 112 LYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158


>gi|330998517|ref|ZP_08322339.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
 gi|329568281|gb|EGG50093.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
          Length = 502

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 21/167 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW++++   + E+K  + +   L ++     + E   P+     +   +  + ++  F G
Sbjct: 15  RWFVIRTLPHQERKLTDLLSAHLPQA---PNILEAYCPTHTTADI-GSKGRDVQQPLFAG 70

Query: 64  YVLI----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           YV +    +AV      +    T               +T  E +    +          
Sbjct: 71  YVFVLSTQEAVADFIGKYYPDGTLLYERKKDDRHKAGFLTIPEEQIRFFKDFNENYAEHV 130

Query: 120 SV-------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
            V               E  E V V DGP     G +     E+  V
Sbjct: 131 IVLEKPYSDYAFNPKTNEPNEIVKVLDGPLKGREGYLTRFHRERRLV 177


>gi|255007624|ref|ZP_05279750.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313145317|ref|ZP_07807510.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134084|gb|EFR51444.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 178

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++     E  A+  +                 +P +  +S++KG+KV          
Sbjct: 10  WFAMRATYRRETDAMRLLAKE---------NLGCFVPMQYKISIKKGKKVRVLVPVIHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + I A  ++                        + D+E++  +                 
Sbjct: 61  IFIHACPSEVKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 121 LNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 160


>gi|227830760|ref|YP_002832540.1| transcription antitermination protein NusG [Sulfolobus islandicus
           L.S.2.15]
 gi|229579655|ref|YP_002838054.1| transcription antitermination protein NusG [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581679|ref|YP_002840078.1| transcription antitermination protein NusG [Sulfolobus islandicus
           Y.N.15.51]
 gi|284998274|ref|YP_003420042.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5]
 gi|227457208|gb|ACP35895.1| ribosomal protein L24 [Sulfolobus islandicus L.S.2.15]
 gi|228010370|gb|ACP46132.1| NusG antitermination factor [Sulfolobus islandicus Y.G.57.14]
 gi|228012395|gb|ACP48156.1| NusG antitermination factor [Sulfolobus islandicus Y.N.15.51]
 gi|284446170|gb|ADB87672.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5]
          Length = 152

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%)

Query: 1   MTP----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           M       +Y V+V    E      +  R+  + +   +  I +P               
Sbjct: 1   MEKPNMRNYYAVKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP--------------- 44

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
                 GYV+++A     V   I       G                    ++V   V +
Sbjct: 45  --PNLKGYVVLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEVLKIVSK 90

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174
                  + G+ V V  GPF      V  V+E K    V + I     P  V +  +Q++
Sbjct: 91  KTIGPTVKPGDVVEVISGPFRGTQAQVVRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 148


>gi|227828023|ref|YP_002829803.1| transcription antitermination protein NusG [Sulfolobus islandicus
           M.14.25]
 gi|229585292|ref|YP_002843794.1| transcription antitermination protein NusG [Sulfolobus islandicus
           M.16.27]
 gi|238620252|ref|YP_002915078.1| transcription antitermination protein NusG [Sulfolobus islandicus
           M.16.4]
 gi|227459819|gb|ACP38505.1| NusG antitermination factor [Sulfolobus islandicus M.14.25]
 gi|228020342|gb|ACP55749.1| NusG antitermination factor [Sulfolobus islandicus M.16.27]
 gi|238381322|gb|ACR42410.1| NusG antitermination factor [Sulfolobus islandicus M.16.4]
 gi|323475114|gb|ADX85720.1| NusG antitermination factor [Sulfolobus islandicus REY15A]
 gi|323477845|gb|ADX83083.1| NusG antitermination factor [Sulfolobus islandicus HVE10/4]
          Length = 152

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%)

Query: 1   MTP----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           M       +Y V+V    E      +  R+  + +   +  I +P               
Sbjct: 1   MEKPNMRNYYAVKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP--------------- 44

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
                 GYV+++A     V   I       G                    +++   V +
Sbjct: 45  --PNLKGYVVLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEILKIVSK 90

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174
                  + G+ V V  GPF      V  V+E K    V + I     P  V +  +Q++
Sbjct: 91  KTIGPTVKPGDVVEVISGPFRGTQAQVVRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 148


>gi|160889471|ref|ZP_02070474.1| hypothetical protein BACUNI_01895 [Bacteroides uniformis ATCC 8492]
 gi|156860988|gb|EDO54419.1| hypothetical protein BACUNI_01895 [Bacteroides uniformis ATCC 8492]
          Length = 176

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M      W+ ++     E +A+  +    +  G         IP +  +S+R+GRKV + 
Sbjct: 1   MDKETEVWFAMRATYRRELEAMHLLEK--ANLG-------CFIPMQYKISIRRGRKVRAL 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116
                  V + A  ++      + T               + D +++  +          
Sbjct: 52  VPVIRNLVFVHARPSEVQRFKSQITYLQYITDTRSGQKIVIPDHDMQRFIAVAGTYNDHL 111

Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                  +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 112 LYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158


>gi|313148912|ref|ZP_07811105.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137679|gb|EFR55039.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 179

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY V+V  + E      +              E  IP      V+  R+V         
Sbjct: 8   HWYAVRVTYSRELSLKTYLDSES---------IENFIPMRYEYIVKNERRVRKLVPAVHN 58

Query: 64  YVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
            V +++    +           P           P  V DS++   M    +  Q+    
Sbjct: 59  LVFVRSCRERIDRIKEEMGVSLPIRYIMDRESRQPIVVPDSQMRSFMAVAGSYEQQLVYL 118

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             S+V F  G+RV V+ G FA   G    V  ++    V V I G
Sbjct: 119 EPSAVAFRKGQRVRVTGGLFAGVEGEFIRVKNDR---RVMVSIQG 160


>gi|254442726|ref|ZP_05056202.1| hypothetical protein VDG1235_960 [Verrucomicrobiae bacterium
           DG1235]
 gi|198257034|gb|EDY81342.1| hypothetical protein VDG1235_960 [Verrucomicrobiae bacterium
           DG1235]
          Length = 83

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           P     F+ GE V V +GPF    G V     E SRV + + +    T V ++ + +
Sbjct: 22  PAVDDSFQCGENVEVLEGPFQGMMGTVLQNLNEGSRVAILLTLLTSETKVTISRSHL 78


>gi|256842699|ref|ZP_05548189.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256735699|gb|EEU49043.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 210

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          ++    K +++   R  R G    + E   PS        G+ VN
Sbjct: 31  RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 87

Query: 56  SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           ++R     YV + A   +                   G       ++D E++ +     +
Sbjct: 88  TKRPLLYNYVFVHASEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 147

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ GPF      V  V        V V I 
Sbjct: 148 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 198


>gi|167754737|ref|ZP_02426864.1| hypothetical protein CLORAM_00241 [Clostridium ramosum DSM 1402]
 gi|167705569|gb|EDS20148.1| hypothetical protein CLORAM_00241 [Clostridium ramosum DSM 1402]
          Length = 170

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           T  WY+ +  +   KK V ++  +++ +          IP       R        +  +
Sbjct: 7   TMYWYVARFKTGRTKKLVSTLNKQVNMN--------AFIPKSERCFGRGETAEFIVKEIY 58

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           P YV IK+ +  + +                      +    SE + ++ ++        
Sbjct: 59  PDYVFIKSDLDQEAFDEQFKEYFKTINGLVDLLEYKDTYPLTSEEQSLLVKLLDNTDTIK 118

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
            +    V  R   +DGP      ++K VD+ +    ++  I      V + Y
Sbjct: 119 HTKGVIVDRRFVPTDGPLVGLEDMIKKVDKYRRFATLDTEILTGKLLVAIDY 170


>gi|237734243|ref|ZP_04564724.1| nusG antitermination factor [Mollicutes bacterium D7]
 gi|229382803|gb|EEO32894.1| nusG antitermination factor [Coprobacillus sp. D7]
          Length = 169

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++      + K  + +    +   +        +P    +  + G+KV +E   FP
Sbjct: 2   MNWYLIFA---NDNKINDLLLYFNNHPEM-----TAFVPKIEKLMKKDGKKVFAEVPMFP 53

Query: 63  GYVLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            Y+ I++    + ++ I     KD    +  + + E       +  + ++  +       
Sbjct: 54  NYIFIESEFNSQEFYQIIESLEKDMDSTMRIMQSDEQKVLSLANNEKELLESLFNDDHLI 113

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR--VTPVEL 168
           + S+   V  ++ V DGP      ++K +D  K    +   +FG+    P+E+
Sbjct: 114 IRSIGVIVDSKLIVQDGPLVGKEEMIKKIDRHKRVAFIG-DVFGKTMKVPLEV 165


>gi|282164804|ref|YP_003357189.1| putative ribosomal protein L26e [Methanocella paludicola SANAE]
 gi|282157118|dbj|BAI62206.1| putative ribosomal protein L26e [Methanocella paludicola SANAE]
          Length = 162

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 31/169 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +N E+     I     + G D  +  I +P E                   GYV
Sbjct: 17  FAVKTTANQERSVANLIAMVARKEGYD--IRSILVPEE-----------------LKGYV 57

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++ M + V HTI++ P     +    + + V                           
Sbjct: 58  LVESPMHEIVEHTIQNIPHAKAVVKGASSIAEVQHFLAPK------------PVVTGISE 105

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      VK VDE K  + VE+       PV +  + V 
Sbjct: 106 GDIVELISGPFKGERARVKRVDETKEEITVELSEAMVPIPVTVRGDIVR 154


>gi|55377551|ref|YP_135401.1| transcription antitermination protein NusG [Haloarcula marismortui
           ATCC 43049]
 gi|55230276|gb|AAV45695.1| transcription antitermination protein NusG [Haloarcula marismortui
           ATCC 43049]
          Length = 145

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+  ++ E+   + I  R      +  +     P                      YV
Sbjct: 4   YAVKTTASQERTVADMIISRE-----EDEIHAALAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A   +     + + P   G +                 M +VE  +           
Sbjct: 42  MVEADDHNVFDRILDEIPHANGVVQGES------------SMAEVEHFLSPKPDVEGIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|220923966|ref|YP_002499268.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219948573|gb|ACL58965.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 173

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 4/144 (2%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVN-SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
           L        +PS   V  +         R  FPGY  +     ++ +  I   P V   +
Sbjct: 30  LQQAGFVTLVPSRTAVVRQASSGKRLVRRPVFPGYAFVGKRP-EQSWRDILRVPGVRALV 88

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
            TGE P+ +    +  ++   +             VG++V + D  +    G V     E
Sbjct: 89  TTGEAPTELPPW-MMKMLIAADEMAAYDRPRPQLAVGDKVRIRDELWQGLIGEVMRA-PE 146

Query: 150 KSRVHVEVVIFGRVTPVELAYNQV 173
             R+ V +  FG+   + +  +++
Sbjct: 147 GRRIAVLLKAFGKKHVLSVDVDRL 170


>gi|281357169|ref|ZP_06243658.1| hypothetical protein Vvad_PD2261 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316200|gb|EFB00225.1| hypothetical protein Vvad_PD2261 [Victivallis vadensis ATCC
           BAA-548]
          Length = 154

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 26  LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85
           +    L +      +P      +    KV +E   FPGY+ +     +     I++  K+
Sbjct: 1   MVAQKLRNAGIACYLPVVPRAYMMHSTKVITEVPMFPGYLFLCLGRFEAADLKIRE-KKI 59

Query: 86  IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV--GERVCVSDGPFASFNGIV 143
           +      +        +  H + + EA  +     +   +  G++V ++ G  A     V
Sbjct: 60  VKIDLQFDEGREALLIDELHTLQRCEALAKTEPILINPGIRHGDKVLITSGSLAGLVTEV 119

Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              D+    + V V + G+     L   +++K+
Sbjct: 120 VRRDDAHDAIIVNVTLLGQHIEYRLPAEKLKKL 152


>gi|254882595|ref|ZP_05255305.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642064|ref|ZP_07996730.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
 gi|254835388|gb|EET15697.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386330|gb|EFV67243.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
          Length = 182

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 13/156 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W+ ++V    E      +         D       IP   V+ + K RKV         
Sbjct: 8   QWFAMRVTYRRELDVKNLL---------DQQGVSSFIPMHYVIRMAKKRKVRELVPVVHN 58

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVS 119
            + I    TD                        V D ++   +       +        
Sbjct: 59  LIFIHITQTDMKELKKDIPYLQYMTDSRSGEKIIVPDGQMRDFIAVAGTYDEHLLFFKPE 118

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            +    G RV +  G FA + GI   V   + R  V
Sbjct: 119 EINPAKGTRVRIIGGDFAGYEGIFIKVKGARDRRVV 154


>gi|309777816|ref|ZP_07672762.1| transcription termination/antitermination factor NusG
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914377|gb|EFP60171.1| transcription termination/antitermination factor NusG
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 88

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 3  PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           +WY+VQV S  EKK  E     +S+     +++E  IP         G+  +     F 
Sbjct: 26 MKWYVVQVRSGHEKKIAEKCRTMISK----DILSECFIPEYIHKKKYMGKWHDVRDILFK 81

Query: 63 GYVLIKA 69
          GY+ +  
Sbjct: 82 GYIFMIT 88


>gi|291515004|emb|CBK64214.1| hypothetical protein AL1_18470 [Alistipes shahii WAL 8301]
          Length = 370

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 17/168 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++ VY    +   E +   L+R   D+  + E   P         GR V + R    
Sbjct: 33  RWYVM-VYPTSSRAMTEELDRELTRRRRDNEPLFEYFAPVLVEARKMNGRLVTTRRSLLY 91

Query: 63  GYVLIKAVMTDKVYHTIK-----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
            Y+ + A   +      +           D+ +   +    +                + 
Sbjct: 92  NYLFVHASECEIYRIKQRLPQYNLLPRVKDSKESYHYPYLTDKAMRDLQWIARSYAEPIP 151

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
                P    +   G+R+ +++G FA     V      + +  + V I
Sbjct: 152 ICTADPA---WLVKGDRIRITEGRFAGIEAKVVTNTPTRHK-EILVSI 195


>gi|15897281|ref|NP_341886.1| transcription antitermination protein NusG [Sulfolobus solfataricus
           P2]
 gi|13813488|gb|AAK40676.1| Transcription termination antitermination factor (nusG) [Sulfolobus
           solfataricus P2]
          Length = 157

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 34/171 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++V    E      +  R+  + +   +  I +P                     GYV
Sbjct: 15  YAIKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP-----------------PNLKGYV 56

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     V   I       G                    +++   V R       + 
Sbjct: 57  VLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEILKIVSRKTVGPTVKP 104

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174
           G+ V V  GPF      V  V+E K    V + I     P  V +  +Q++
Sbjct: 105 GDVVEVISGPFRGTQAQVIRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 153


>gi|301309360|ref|ZP_07215302.1| putative transcription termination factor NusG [Bacteroides sp.
           20_3]
 gi|300832449|gb|EFK63077.1| putative transcription termination factor NusG [Bacteroides sp.
           20_3]
          Length = 178

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 21/169 (12%)

Query: 1   MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
           M       W++++     N           R +   L+    E+  P    +  RKG+++
Sbjct: 1   MEHPLTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRI 51

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             E       +      T       +  T +     G    P  V  +E+   +  V + 
Sbjct: 52  REEVPLLHDLLFAHTTRTCMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 111

Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
                  V        G  + +  GP   + G + ++   +  R+ VE+
Sbjct: 112 DSPRYFLVEELTSAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 160


>gi|167044190|gb|ABZ08872.1| putative KOW motif protein [uncultured marine crenarchaeote
           HF4000_APKG5E24]
 gi|167044468|gb|ABZ09143.1| putative KOW motif protein [uncultured marine crenarchaeote
           HF4000_APKG6J21]
          Length = 222

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 31/171 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK  +  +  R+    ++                              GYV
Sbjct: 81  FAVRTTGGQEKIVMRLLEARIKMEKINIQ-------------------SVLLLSDLKGYV 121

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     ++  I+    + G L        +    I            +  +     V
Sbjct: 122 VVEARDVSAMFDAIQGIRHIRGQLRGELTYKEIDKYLI------------KKSTVSELAV 169

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +  GPF      +  ++ EK    V ++      PV +  N ++ +
Sbjct: 170 ENTVEIIGGPFKGMKATITRLELEKEEATVILLDATYELPVTVDANYLKLV 220


>gi|284174530|ref|ZP_06388499.1| transcription antitermination protein NusG [Sulfolobus solfataricus
           98/2]
 gi|3914185|sp|P96036|NUSG_SULSO RecName: Full=Putative transcription antitermination protein nusG
 gi|1814426|gb|AAB99523.1| transcription termination-antitermination factor [Sulfolobus
           solfataricus]
 gi|261601951|gb|ACX91554.1| NusG antitermination factor [Sulfolobus solfataricus 98/2]
          Length = 152

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%)

Query: 1   MTP----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           M       +Y ++V    E      +  R+  + +   +  I +P               
Sbjct: 1   MEKPNMRNYYAIKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP--------------- 44

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
                 GYV+++A     V   I       G                    +++   V R
Sbjct: 45  --PNLKGYVVLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEILKIVSR 90

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174
                  + G+ V V  GPF      V  V+E K    V + I     P  V +  +Q++
Sbjct: 91  KTVGPTVKPGDVVEVISGPFRGTQAQVIRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 148


>gi|13476620|ref|NP_108190.1| hypothetical protein mlr7998 [Mesorhizobium loti MAFF303099]
 gi|14027382|dbj|BAB53651.1| mlr7998 [Mesorhizobium loti MAFF303099]
          Length = 201

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 26/176 (14%)

Query: 24  GRLSRSGLDHLVTEITIPSERV--VSVRKGRKVNSERRFFPGYVLIKA-VMTDKVYHTIK 80
             ++   +     E   P  R   +  R   ++      F GY+ +       +      
Sbjct: 20  EIVAERSIRDAGFECYYPRMRKEIIHHRTNVRIVRRFPLFTGYIFVALPSANGEYLKDCD 79

Query: 81  DTPKVIGFLGTGENPSP-----------------VTDSEIEHIMNQVEAAVQRPVSSVFF 123
              +++ + G    P                     D++   I  ++E   +R   ++ F
Sbjct: 80  GLGRLLSYDGEFGKPWQVPTGAVESYMRAEADLEFDDTKESRIKRKLEGKTRRETIAMTF 139

Query: 124 EVGERVCVSDG-----PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             G+ + V          A F+G V +V   +  V   + +FGR+   E   + +E
Sbjct: 140 PEGQAIRVKQDWQHKHMLAGFHGEVVSVTG-RGTVKSMIELFGRLVAAEFDADDIE 194


>gi|29345872|ref|NP_809375.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337765|gb|AAO75569.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 184

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY VQ +   E    E +G  L + G+++ +    I          G+K         
Sbjct: 14  KAWYAVQTFYCKE----EHLGKYLEKKGVNYFIPMRYI----EHETLDGKKHRKLTPAVH 65

Query: 63  GYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115
             + I+   T+K           P ++    +      + D E+       +   +    
Sbjct: 66  NLLFIEKEFTEKELLERVKDCTIPFLLVRDRSTRRCYEIPDCEMLEFRAVCDPNYKGTLY 125

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGI 142
               +     G+ V V  GPFA   G 
Sbjct: 126 VDTVTAEARPGQAVRVIRGPFAGLEGK 152


>gi|167043318|gb|ABZ08023.1| putative KOW motif protein [uncultured marine crenarchaeote
           HF4000_ANIW141M18]
          Length = 228

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 31/171 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK  +  +  R+    ++                              GYV
Sbjct: 87  FAVRTTGGQEKIVMRLLEARIKMEKINIQ-------------------SVLLLSDLKGYV 127

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     ++  I+    + G L        +    I            +  +     V
Sbjct: 128 VVEARDVSAMFDAIQGIRHIRGQLRGELTYKEIDKYLI------------KKSTVSELAV 175

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
              V +  GPF      +  ++ EK    V ++      PV +  N ++ +
Sbjct: 176 ENTVEIIGGPFKGMKATITRLELEKEEATVILLDATYELPVTVDANYLKLV 226


>gi|46446232|ref|YP_007597.1| putative transcription antitermination factor NusG [Candidatus
          Protochlamydia amoebophila UWE25]
 gi|46399873|emb|CAF23322.1| putative transcription antitermination factor NusG [Candidatus
          Protochlamydia amoebophila UWE25]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 4  RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
          +WY+VQV S  EKK  +++   L   G+   + +I +P+E V  V+K   +  +   
Sbjct: 3  KWYVVQVLSTHEKKVKKALEEHLELKGMSGEIEQILLPTENVSEVKKVSNMLLKNVC 59


>gi|304314031|ref|YP_003849178.1| transcription antitermination protein NusG [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587490|gb|ADL57865.1| predicted transcription antitermination protein NusG
           [Methanothermobacter marburgensis str. Marburg]
          Length = 159

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 25/171 (14%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++     EK     +  ++  SG++  +  I +P                     GY+
Sbjct: 9   YALKTSVGQEKNVARMLARKVRDSGIE--INAILVPES-----------------LRGYI 49

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++     + +     P + G +          + E       V+  ++        + 
Sbjct: 50  LVESSSKIDMRNPAIRVPHLRGVVEGKTEGESKIEFEE------VKRFLKPEPIISSIKK 103

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G  V +  GPF      V  +DE +  V +E++      PV +  +Q+  I
Sbjct: 104 GSIVELISGPFKGERAKVIRIDESREEVVLELIEAAVPIPVTVKGDQIRII 154


>gi|325959969|ref|YP_004291435.1| NusG antitermination factor [Methanobacterium sp. AL-21]
 gi|325331401|gb|ADZ10463.1| NusG antitermination factor [Methanobacterium sp. AL-21]
          Length = 147

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 31/171 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++     EK     IG  +  SG++  V  I +P                     GY+
Sbjct: 3   YAIRTLVGQEKNVARIIGRNVKNSGIE--VHSILVPES-----------------LRGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++          I                      E       V++ +         + 
Sbjct: 44  LVE------SSTKIDMQNPAFKVPHMKGAIEGEIPYEE------VKSFLNPEPILASVQK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G  V +  GPF      V  +DE K  V +E++      PV +  +Q+  I
Sbjct: 92  GSIVELISGPFKGEKAKVVRIDESKEDVVLELIEAAVPIPVTVKGDQIRLI 142


>gi|2499342|sp|Q46494|NUSG_ACIAM RecName: Full=Putative transcription antitermination protein nusG
 gi|1217623|emb|CAA65235.1| nusG protein [Acidianus ambivalens]
          Length = 152

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 34/173 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+V    E      +  R   + +   +  I +P                     GYV
Sbjct: 9   YAVKVTGGQEVSVGLMLEERAKTNNIPE-IYSIIVP-----------------PGLKGYV 50

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     V   I     V G                    + +   V + V+    + 
Sbjct: 51  IVEASGPHVVKLLIAGIRHVRGIAQG------------LVPKDHIVKMVSKKVTGPTIKE 98

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176
           G+ V V  GPF      V  V E K    V + I     P  V +  +QV+ +
Sbjct: 99  GDLVEVVSGPFRGMQAQVVKVTEGKG--EVVLNILESAFPLQVTIPVDQVKPV 149


>gi|270297042|ref|ZP_06203241.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273029|gb|EFA18892.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 178

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 IP +  + ++K +KV +        
Sbjct: 10  WYAMRATYRREPDAMHLLKKE---------NLGCFIPMQYKICIKKRKKVRALVPVVHNL 60

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  ++      + T               V D +++  +                 
Sbjct: 61  LFVHARPSNVQRVKSQVTYLQYITDTRSGQKIIVPDGQMQRFIAVSGTYDDHLLYFQPDE 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    G +V ++ G F    GI   V   + R  V + I G
Sbjct: 121 LNLSKGTKVRITGGEFEGQEGIFLKVKGARDR-RVVIEIQG 160


>gi|262384780|ref|ZP_06077912.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293496|gb|EEY81432.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 370

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 4   RWYIV---QVYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57
           RWY++           K    +S+    SR       + E   PS   V    G+ VN++
Sbjct: 27  RWYVLTLPSTGVARRDKISPAKSLDAEFSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVEA 112
           R     YV ++A + +     +K T  +  F      G   +   ++D E+ ++    E+
Sbjct: 87  RPLLFNYVFVRASVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
                   V        G+RV ++ G F      V 
Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|253567873|ref|ZP_04845284.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384765|ref|ZP_06994325.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|251841946|gb|EES70026.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263044|gb|EFI05908.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 181

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY VQ +   E    E +G  L + G+++ +    I          G+K         
Sbjct: 11  KAWYAVQTFYCKE----EHLGKYLEKKGVNYFIPMRYI----EHETLDGKKHRKLTPAVH 62

Query: 63  GYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115
             + I+   T+K           P ++    +      + D E+       +   +    
Sbjct: 63  NLLFIEKEFTEKELLERVKDCTIPFLLVRDRSTRRCYEIPDCEMLEFRAVCDPNYKGTLY 122

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGI 142
               +     G+ V V  GPFA   G 
Sbjct: 123 VDTVTAEARPGQAVRVIRGPFAGLEGK 149


>gi|262382524|ref|ZP_06075661.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295402|gb|EEY83333.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 365

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          +     K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAVGGYDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           + +     YV I A   +                  +G       ++D E+E +    E+
Sbjct: 83  TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ G F      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193


>gi|150007996|ref|YP_001302739.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149936420|gb|ABR43117.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 369

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            K    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDKISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV I++ + +     +K T  +  F      G   +   ++DSE+ ++    E
Sbjct: 86  KRPLLFNYVFIRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDSEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSNRLLKGDRVRITSGYFTGMEAEVV 180


>gi|15679672|ref|NP_276789.1| transcription antitermination protein NusG [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622808|gb|AAB86150.1| transcription termination factor NusG [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 169

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 25/171 (14%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++     EK     +  ++  SG++  +  I +P                     GY+
Sbjct: 19  YALKTSVGQEKNVARMLARKVRDSGIE--INAILVPES-----------------LRGYI 59

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++     + +     P + G + +        D E       V+  ++        + 
Sbjct: 60  LVESSSKIDMRNPAIRVPHLRGVVESKTEGEAEIDFEE------VKRFLKPEPIISSIKK 113

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G  V +  GPF      V  +DE +  V +E++      PV +  +Q+  I
Sbjct: 114 GSIVELISGPFKGERAKVIRIDESREEVVLELIEAAVPIPVTVKGDQIRII 164


>gi|329766365|ref|ZP_08257911.1| NusG antitermination factor [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137134|gb|EGG41424.1| NusG antitermination factor [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 152

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 31/169 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++     EK  +  +  + + + L+                              GYV
Sbjct: 10  FAIRTTGGQEKIVMRLLEAKANTNKLNIQ-------------------SVLLVDNLKGYV 50

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +I+A+     Y  ++    + G L                    +E  + +  +     V
Sbjct: 51  VIEAINPSDAYMAVEGVRHIRGQLRGELEFKD------------IEGYLVKKSTVSQLGV 98

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            + + ++ GPF      +  +D +K    V ++      PV +  N ++
Sbjct: 99  DDVIEITGGPFKGMKATITRIDVDKEEATVVLLDASYQLPVTVDANYLK 147


>gi|307943758|ref|ZP_07659102.1| putative transcription termination factor NusG [Roseibium sp.
           TrichSKD4]
 gi|307773388|gb|EFO32605.1| putative transcription termination factor NusG [Roseibium sp.
           TrichSKD4]
          Length = 200

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +   +   E+ A+  +  R    GL   +        R    R  + +++ +    GY
Sbjct: 31  WLVACCHPTKEQHALRQLTER----GLLAYLPMR---PGRRRQPRCKKMIDNSQPLIRGY 83

Query: 65  VLIKAVM------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
           + +           + +                          +I     Q+     +P 
Sbjct: 84  LFVCTDFSTGSVVDEILSCGCVSGLLSFRADKYPHRVPSARVVDIIDHCEQL-QTGGKPQ 142

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            ++ F++G +V +  GP   F+ +V   D  K+RV  EV 
Sbjct: 143 KAIGFDIGSKVRLIAGPMEGFSAVVTGYDLAKARVQAEVK 182


>gi|270296612|ref|ZP_06202811.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272599|gb|EFA18462.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 176

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 17/168 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M      W+ ++     E +A+  +                 IP +  +S+ +GRKV + 
Sbjct: 1   MDKETEVWFAMRATYRRELEAMHLLEKA---------NIGCFIPMQYKISICRGRKVRAL 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116
                  V + A  ++      + T               + D +++  +          
Sbjct: 52  VPVIRNLVFVHARPSEVQRFKSQITYLQYITDTRSGQKIIIPDHDMQRFIAVAGTYNDHL 111

Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                  +    G +V ++ G F    G+   V   + R  V + I G
Sbjct: 112 LYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158


>gi|84498526|ref|ZP_00997296.1| putative secreted protein [Janibacter sp. HTCC2649]
 gi|84381269|gb|EAP97153.1| putative secreted protein [Janibacter sp. HTCC2649]
          Length = 438

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            F  G+ V ++ G +   +  V  VD  K+ V VEVV+ G   PV L Y+ V
Sbjct: 383 PFSPGDTVKITAGQYLGLSAKVLKVDTVKNTVTVEVVVLGIKLPVVLPYSSV 434


>gi|329955184|ref|ZP_08296141.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
 gi|328526183|gb|EGF53202.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
          Length = 199

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 17/162 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY V+V  + E    + +              E  IP      +R  R+V         
Sbjct: 27  HWYAVRVTYSRELSLKDYLDKE---------NIENFIPMHYEYIIRNERRVRKLVPAIHN 77

Query: 64  YVLIK---AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            V ++   A + +   +   + P           P  + D+++   +       +  V  
Sbjct: 78  LVFVRSTRACIDEIKNNPALNIPVRYIMNRETRQPVIIPDAQMRSFILVAGTYDEAVVYV 137

Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              E     G +V ++ G F    G    +  ++ RV V + 
Sbjct: 138 EPEELKLVKGTKVRITGGVFEGAVGEFVRLRHDR-RVVVNIE 178


>gi|76801059|ref|YP_326067.1| transcription antitermination protein NusG [Natronomonas pharaonis
           DSM 2160]
 gi|76556924|emb|CAI48498.1| transcription antitermination protein homolog [Natronomonas
           pharaonis DSM 2160]
          Length = 146

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 33/169 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+  ++ E+   + +  R         +     P                      YV
Sbjct: 4   YSVKTTASQERTVADMLISREEEG-----IHATLAPDA-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A  T  +   ++D P     +           SE     ++VE  +           
Sbjct: 42  MVEADDTAAISRALEDIPHARTLV-----------SEQPSPFSEVEHFLSPKPDVEGIAE 90

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 91  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 139


>gi|317131504|ref|YP_004090818.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
 gi|315469483|gb|ADU26087.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
          Length = 164

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+   Y++QV S  EK    ++                  P E       G         
Sbjct: 1   MSM--YVLQVLSGAEKDVRAALL---------DQGIPAYAPEENRQIRSGGIWQTRPYLL 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           F GYV +       +Y+ I+  P V         + + +   E   I        +   S
Sbjct: 50  FGGYVFVVVGNVCAMYYRIRRVPGVLRWLELHAGDATALLPDEEALIRRIGSQTFE---S 106

Query: 120 SVFFEVGERVCVSDGPFASF--NGIVKNVDEEKSRVHVE--VVIF 160
            V    G+     DGP   +   G+    +  + R  V   + + 
Sbjct: 107 HVRQLAGDTFEPVDGPLKEYADAGVRILYNRRQRRAFVFEPLSMM 151


>gi|150399496|ref|YP_001323263.1| transcription antitermination protein NusG [Methanococcus vannielii
           SB]
 gi|150012199|gb|ABR54651.1| NusG antitermination factor [Methanococcus vannielii SB]
          Length = 146

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  EK   E++  +  +  L+       + S                    GY+
Sbjct: 3   FAVRTTNGQEKNVAEALATKAEKENLE-------VFSILATE------------DLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     +   ++ + KV G +      + +                         + 
Sbjct: 44  LVEAANKGALDELVRKSFKVKGIVPGETTVNELDHLLTPT------------KIIENIDK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  + +E++      P+ +   QV KIV
Sbjct: 92  GDVVELVGGPFKGERARVTRVDKNKEEITLELIDAAVPIPITVGVEQV-KIV 142


>gi|71737973|ref|YP_273246.1| transcriptional activator RfaH [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558526|gb|AAZ37737.1| transcriptional activator RfaH [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 192

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 21/164 (12%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+VQ  S  + +A E++                  P+    S  +          FP
Sbjct: 42  KEWYLVQCKSGQDSRAEENL---------TAQGYANFRPTINASSESRSVNTKHNSPLFP 92

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GY+ I    +D  +  ++ T  ++  +  G     V +  I+ I  + E+      S   
Sbjct: 93  GYLFIHLSASD-NWAPVRSTKGILTIVKFGGRAHAVRNEIIQDIKTRAESLNYSHSSHSE 151

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEK---SRVHVEVVIFGRV 163
            +          P  +    + ++   K    R  + V    R 
Sbjct: 152 KD--------SAPLDNRGSEISDILSAKSHEERTLLLVGFLQRE 187


>gi|257388977|ref|YP_003178750.1| NusG antitermination factor [Halomicrobium mukohataei DSM 12286]
 gi|257171284|gb|ACV49043.1| NusG antitermination factor [Halomicrobium mukohataei DSM 12286]
          Length = 145

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+  ++ E+   + I  R      +  +     P                      YV
Sbjct: 4   YAVKTTASQERTVADMIISRE-----EESIHAALAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A         + + P   G +                 M++VE  +           
Sbjct: 42  MVEADDASVFERILDEIPHANGVVPGES------------SMSEVEHFLSPKPDVEGIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|262383310|ref|ZP_06076446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294208|gb|EEY82140.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 178

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 21/169 (12%)

Query: 1   MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
           M       W++++     N           R +   L+    E+  P    +  RKG+++
Sbjct: 1   MEHPLTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRI 51

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             E       +              +  T +     G    P  V  +E+   +  V + 
Sbjct: 52  REEVPLLHDLLFAHTTCACMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 111

Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
                  V        G  + +  GP   + G + ++   +  R+ VE+
Sbjct: 112 DSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 160


>gi|291515005|emb|CBK64215.1| Transcription antiterminator [Alistipes shahii WAL 8301]
          Length = 374

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 17/168 (10%)

Query: 4   RWYIVQVYS-----NCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSE 57
           RWY++         + +     ++   L R   +   V E   PS   V  + G  V + 
Sbjct: 29  RWYVL-ALPTSRQGHYQGNPARALRMELERRTRNGEPVFEYFAPSYVEVRKQHGELVRTN 87

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS---EIEHIMNQVEAAV 114
                 YV I A   +      +  P+        E           E    +  V A+ 
Sbjct: 88  HPLLYNYVFIHASEAEIYRMK-RFLPQYNFLPRVREKDDAYYPYLSDEAMENLKWVAASY 146

Query: 115 QRPVSSVFF-----EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              +            G+R+ +++G F      V  +     R  V V
Sbjct: 147 SDVLPVYTPGPERLMKGDRIRITEGQFKGVEASVI-IQPGGGRKEVMV 193


>gi|298376654|ref|ZP_06986609.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|301309917|ref|ZP_07215856.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|298266532|gb|EFI08190.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|300831491|gb|EFK62122.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 370

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV +++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|298378121|ref|ZP_06988051.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298264975|gb|EFI06658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 231

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 10/145 (6%)

Query: 23  GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVY---HTI 79
             R  R G    + E   PS        G+ VN++R     YV + A   +         
Sbjct: 5   LSRRERRG--EALFEYFSPSYVEARKVGGKMVNTKRPLLYNYVFVHASEDEIFRLKRTLP 62

Query: 80  KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF----FEVGERVCVSDGP 135
                     G       ++D E++ +     +        V        G+RV ++ GP
Sbjct: 63  LYNFLPRVSSGGRSYFPYLSDREMDTLRWVAASYSNELPVYVPDSGRLLKGDRVRITSGP 122

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIF 160
           F      V  V        V V I 
Sbjct: 123 FTDMEAEVV-VQPGGGHKDVMVRIL 146


>gi|16082397|ref|NP_394879.1| transcription antitermination protein NusG [Thermoplasma
           acidophilum DSM 1728]
 gi|10640767|emb|CAC12545.1| probable transcription termination-antitermination factor related
           protein [Thermoplasma acidophilum]
          Length = 299

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 22/169 (13%)

Query: 7   IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
            ++     E +    +  R  +   D       +PSE    +              GY+ 
Sbjct: 149 ALKTTVGSEVQVAIDLNNRAEKDREDRSGDGKKLPSEVYAIMAPYE--------IKGYIF 200

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
           ++ +  D++ +  +D     G +    +   +                    +    E+G
Sbjct: 201 VETMHPDRISYLARDIRGYKGMVSGKIDLEEIAHYLTPK------------PAVSGLELG 248

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQVE 174
             V + +GPF      + ++D  K  V V  V       PV +    + 
Sbjct: 249 SLVELVEGPFKGEKAKIISIDSVKEEVTVQLVESM-VPIPVTVKAESIR 296


>gi|224535786|ref|ZP_03676325.1| hypothetical protein BACCELL_00650 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522509|gb|EEF91614.1| hypothetical protein BACCELL_00650 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 206

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 8/159 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    +S+    S   LD    +  +P+  V+S  K R+  SE     
Sbjct: 35  KHWFAARTRDKQEFAVRKSLDKLKSEEKLD---LDYYLPTRIVISQLKYRRKRSEVPVIR 91

Query: 63  GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS- 120
             + I A   T      + +            +   V D ++E  M  ++          
Sbjct: 92  NLIFICATKQTACDISNVYNVQLFYMKDLFTHSMLVVPDKQMEDFMFVMDLNPDGVNFDN 151

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
             F +G++V V  G F+   G    V  E ++ +V + I
Sbjct: 152 EPFAIGDKVKVVKGDFSGIEG---EVATEANKTYVVIRI 187


>gi|150008057|ref|YP_001302800.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149936481|gb|ABR43178.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 370

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV +++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|262384907|ref|ZP_06078036.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293459|gb|EEY81398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 370

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRERRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV +++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|255014262|ref|ZP_05286388.1| putative transcriptional regulator Updx-like protein [Bacteroides
           sp. 2_1_7]
          Length = 177

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 22/169 (13%)

Query: 1   MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
           M       W++++     N           R +   L+    EI  P    +  RKG+++
Sbjct: 1   MEHPLTDNWFVLRDLTRPN----------KRPAYRLLEEKGIEIFTPMRWRLVERKGKRI 50

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             E       +              +  T +     G    P  V  +E+   +  V + 
Sbjct: 51  REEVPLLHDLLFAHTTCACMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 110

Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
                  V        G  + +  GP   + G + ++   +  R+ VE+
Sbjct: 111 DSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 159


>gi|256840763|ref|ZP_05546271.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738035|gb|EEU51361.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 370

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV +++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|301309846|ref|ZP_07215785.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300831420|gb|EFK62051.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 367

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRERRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV I++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFIRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|255022915|ref|ZP_05294901.1| transcription antitermination protein NusG [Listeria monocytogenes
           FSL J1-208]
          Length = 27

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176
           K +  V V +FGR TPVE+ +NQ+EK+
Sbjct: 1   KGKAKVMVNMFGRETPVEVDFNQIEKL 27


>gi|256840830|ref|ZP_05546338.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738102|gb|EEU51428.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 371

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKAV--ESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +      +   LSR       + E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSRGLDAELSRRERRGETLFEYFAPSYVEVRKVDGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G   +   ++DSE+ ++    E+ 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQTLPLYNFLPRVSSGGTPHFPYLSDSEMGNLRWVAESY 146

Query: 114 VQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G FA     V 
Sbjct: 147 SNELPVYVPDSGRLLKGDRVRITSGYFAGMEAEVV 181


>gi|237725565|ref|ZP_04556046.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436252|gb|EEO46329.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 182

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 14/163 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+ ++       +    +      +          IP    V +R GRK         
Sbjct: 7   MQWFAMRATYRRGMQVKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
             + + AV ++      K                 V D ++   +       +       
Sbjct: 58  DLIFVHAVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 117

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             V    G +V ++ G F  + G+   V   + R  V + + G
Sbjct: 118 DEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159


>gi|330508664|ref|YP_004385092.1| 50S ribosomal protein L24 [Methanosaeta concilii GP-6]
 gi|328929472|gb|AEB69274.1| ribosomal protein L24 [Methanosaeta concilii GP-6]
          Length = 151

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y+V+  +N E+     I     +   D  +  + +P                     GYV
Sbjct: 7   YVVKTTANQERSVANMIAQIARKEKYD--IRALLVPDV-----------------LKGYV 47

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++   + V   I+  P     +    N   V                    + +    
Sbjct: 48  LVESPAPEIVDQAIQGIPHARSVIKGASNIGEVEHFLTPK------------PAVIGINE 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  GPF      VK VD  K  + VE+
Sbjct: 96  GAIVELISGPFKGEKARVKRVDLAKEEITVEL 127


>gi|256841520|ref|ZP_05547027.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298376269|ref|ZP_06986225.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
 gi|256737363|gb|EEU50690.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267306|gb|EFI08963.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
          Length = 178

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 21/169 (12%)

Query: 1   MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54
           M       W++++     N           R +   L+    E+  P    +  RKG+++
Sbjct: 1   MEHPLTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRI 51

Query: 55  NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
             E       +              +  T +     G    P  V  +E+   +  V + 
Sbjct: 52  REEVPLLHDLLFAHTTCACMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 111

Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
                  V        G  + +  GP   + G + ++   +  R+ VE+
Sbjct: 112 DSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGARVKRLIVEI 160


>gi|255014894|ref|ZP_05287020.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           sp. 2_1_7]
          Length = 186

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            K    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDKISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV +++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|189466308|ref|ZP_03015093.1| hypothetical protein BACINT_02682 [Bacteroides intestinalis DSM
           17393]
 gi|189434572|gb|EDV03557.1| hypothetical protein BACINT_02682 [Bacteroides intestinalis DSM
           17393]
          Length = 190

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 17/162 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ V+V  + E      +              E  IP    + ++ G++V         
Sbjct: 18  HWFAVRVSYSRELALKAILDEE---------NIESFIPMRYGIVMKGGKRVRKLVPAIHN 68

Query: 64  YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            V I +    +           P           P  + D+++   +    +  +  +  
Sbjct: 69  LVFIHSTRKRIDALKDELEGKMPIRFIMNREYCRPVVIPDAQMRSFILVAGSYDEAVLYI 128

Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              E     G++V ++DG F    G    +  ++ RV V + 
Sbjct: 129 ESTELNLVKGQKVRITDGVFKGVIGEFVRIRHDR-RVVVNIE 169


>gi|20094259|ref|NP_614106.1| transcription antitermination protein NusG [Methanopyrus kandleri
           AV19]
 gi|19887296|gb|AAM02036.1| Transcription antiterminator NusG [Methanopyrus kandleri AV19]
          Length = 163

 Score = 47.7 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 24/152 (15%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+V +  E+   + +  R  R   +  +            +R                
Sbjct: 10  YAVRVQAGREEATADMLVMRARRKVKEEGIETGLKAVIAPEELRG--------------- 54

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            +   + +           +    G  E P    + E                 +V    
Sbjct: 55  YVIIEVEELTDELRDLIHDLPDTRGIVEKPMDFEEIEH---------YFAPKPEAVEISE 105

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V +VDE +  + VE+
Sbjct: 106 GDVVEILSGPFKGEKARVVSVDESRREITVEL 137


>gi|305663812|ref|YP_003860100.1| NusG antitermination factor [Ignisphaera aggregans DSM 17230]
 gi|304378381|gb|ADM28220.1| NusG antitermination factor [Ignisphaera aggregans DSM 17230]
          Length = 166

 Score = 47.7 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++  +  E      I  R   S L                               GY+
Sbjct: 23  FAIRTTAGQETNVALMIEVRAKTSNL-------------------PIYSILSLPNLKGYI 63

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++      VY  I+    V G          +        + ++             +V
Sbjct: 64  VLETPGLHIVYEAIRGLKHVKGKTSGTLRWEDLEALIKPRSLIEL------------IQV 111

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           GE V V  GPF      +  +D+ ++ V + V
Sbjct: 112 GEEVEVVAGPFRGMKAKIIAIDKTRNEVSLNV 143


>gi|317131095|ref|YP_004090409.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
 gi|315469074|gb|ADU25678.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3]
          Length = 164

 Score = 47.7 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 17/158 (10%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+   Y++QV S  EK    ++                  P E       G         
Sbjct: 1   MSM--YVLQVLSGAEKDVCAALL---------DQGIPAYTPEENRQIRSGGLWRARPYLL 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           F GYV +        Y+ I+  P V           + +T  E + I       ++   S
Sbjct: 50  FRGYVFVVVRDVRASYYQIRRIPGVLRWLELHAGQATALTPGEEDRIRRMGGQLLE---S 106

Query: 120 SVFFEVGERVCVSDGPFASF--NGIVKNVDEEKSRVHV 155
            V     +     DGP   +   G+    +    R +V
Sbjct: 107 HVLQLADDLFEPVDGPLKEYADAGVRILYNRHLRRAYV 144


>gi|330995495|ref|ZP_08319400.1| hypothetical protein HMPREF9442_00460 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575563|gb|EGG57101.1| hypothetical protein HMPREF9442_00460 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 355

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWYI+ +          ++     RS   D  + E   P    V  + G  V +ER    
Sbjct: 17  RWYILVLPVRHRGDPARALRMEADRSVKRDEAMLEYFAPKYIEVKRKGGEFVPTERPLLY 76

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
            YV I++   +                    G   +   ++D+E+ ++    EA      
Sbjct: 77  NYVFIRSTEAEIYRRQRSALHAYSFLPRVHSGGESHYPYLSDAEMRNLRWVAEAYRGELP 136

Query: 119 SSVFFE----VGERVCVSDGPFASFNGIV 143
             V        G+RV +++G F     +V
Sbjct: 137 VYVPESGRLVKGDRVRITEGEFKGVEAVV 165


>gi|255012551|ref|ZP_05284677.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           sp. 2_1_7]
 gi|256839010|ref|ZP_05544520.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374562|ref|ZP_06984520.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|256739929|gb|EEU53253.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298268930|gb|EFI10585.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 365

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          +     K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAVGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           + +     YV I A   +                  +G       ++D E+E +    E+
Sbjct: 83  TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ G F      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193


>gi|224540681|ref|ZP_03681220.1| hypothetical protein BACCELL_05595 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517705|gb|EEF86810.1| hypothetical protein BACCELL_05595 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 178

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY  +V      K  E I   L+R  ++  +    I  ER    +  RK       F 
Sbjct: 8   MHWYAFKV---FYNKVFE-IEDSLNRDKIETYIPCERILVERGGVKKYVRKPIISSLLFF 63

Query: 63  G-----YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
                  + ++  +TD+V    +        +   E    +           ++     P
Sbjct: 64  YSTEKQALALQQKLTDRVLLYTRLVNWQKLPIAIPEREMKIFMLVTSSGEKGLDYFGDVP 123

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           +    +  GERV V+DGPF    G +  +     R+ V +
Sbjct: 124 M---EYSTGERVLVTDGPFKGAEGCIHRIKG-NRRLIVAI 159


>gi|154151802|ref|YP_001405420.1| ribosomal protein L24 [Candidatus Methanoregula boonei 6A8]
 gi|154000354|gb|ABS56777.1| ribosomal protein L24 [Methanoregula boonei 6A8]
          Length = 174

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 28/152 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++  S  E+   ++I   +     D  VT I +P                     GYV
Sbjct: 26  FAIKTTSKQERTVADNILKAIETKATDIKVTSIIVP-----------------NELQGYV 68

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++          + +       +  G+             + +V   +         + 
Sbjct: 69  LVETPEERNRIEQLVEMIAHARAVAKGQT-----------TLAEVGHFLIPKPVVSGIDE 117

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  GPF     +VK VD  K  + VE+
Sbjct: 118 GTIVELIAGPFKGEKAVVKRVDSAKEEITVEL 149


>gi|313159096|gb|EFR58471.1| transcription termination/antitermination factor NusG [Alistipes
           sp. HGB5]
          Length = 182

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 20/185 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY+++V    E    E +        +++ V              KG+   +     
Sbjct: 8   AAEWYVLRVTYQRELSTKEYLDK----LNIENFVPVR----VVRRRNSKGQFFRACEVAV 59

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP-- 117
             Y+ I++             P +   +    GEN   +   E       V         
Sbjct: 60  HNYIFIRSTREVIDELKTYKLPMLRYVMHPQNGENQIMIVPEEQMRNFIAVAGNEDEQVL 119

Query: 118 ---VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV---ELAYN 171
                 V    G++V ++ G F    G++  V   + +  V V I G +T V    +   
Sbjct: 120 FMSPEEVALSKGDKVRITGGVFEGVEGLLMRVKNSRGK-RVVVKIDG-ITAVATASIPSA 177

Query: 172 QVEKI 176
            VEKI
Sbjct: 178 LVEKI 182


>gi|301308235|ref|ZP_07214189.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300833705|gb|EFK64321.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 365

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY++          +     K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYVL-TLPTAVGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           + +     YV I A   +                  +G       ++D E+E +    E+
Sbjct: 83  TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ G F      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193


>gi|254166694|ref|ZP_04873548.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
 gi|289596539|ref|YP_003483235.1| NusG antitermination factor [Aciduliprofundum boonei T469]
 gi|197624304|gb|EDY36865.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
 gi|289534326|gb|ADD08673.1| NusG antitermination factor [Aciduliprofundum boonei T469]
          Length = 277

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 30/151 (19%)

Query: 7   IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
            V+     E K    IG +    G    +  +  P                     GYV 
Sbjct: 133 AVKTTIGQEVKVARDIGMKAKIHGWKE-IFSVLAP-----------------YNLKGYVF 174

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
           ++    DKV   I+      G +    +   +                    +     VG
Sbjct: 175 VETSRPDKVLSLIRGIKDAKGVVRGEMHLEEIKHYLTPT------------PTIHRISVG 222

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           + V + +GPF   +  V  +DE K  + VE+
Sbjct: 223 DIVELVEGPFKGEHAKVIQIDEAKDEITVEL 253


>gi|150008463|ref|YP_001303206.1| putative transcriptional regulator Updx-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149936887|gb|ABR43584.1| putative transcriptional regulator Updx-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 178

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 17/161 (10%)

Query: 5   WYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           W++++     N           R +   L+    EI  P    +  RKG+++  E     
Sbjct: 9   WFVLRDLTRPN---------AKRPAYRLLEEKGIEIFTPMRWRLVERKGKRIREEVPLLH 59

Query: 63  GYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             +      T       +  T +     G    P  V  +E+   +  V +        V
Sbjct: 60  DLLFAHTTRTCMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFICAVHSDDSPRYFLV 119

Query: 122 FF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157
                   G  + +  GP   + G + ++   +  R+ VE+
Sbjct: 120 EELTPAMYGRMIRIEGGPLDGYEGRLLSIRGTRVKRLIVEI 160


>gi|323498594|ref|ZP_08103586.1| transcriptional activator RfaH [Vibrio sinaloensis DSM 21326]
 gi|323316292|gb|EGA69311.1| transcriptional activator RfaH [Vibrio sinaloensis DSM 21326]
          Length = 73

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 104 EHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163
              +  +E A Q        E G+ V V++G FA    I +  D E+ R  + V +  + 
Sbjct: 1   MFTLKGIEQAQQCLKQGCLPEKGDTVKVANGQFAGIEAIYQQADGER-RSILLVNMLSKQ 59

Query: 164 TPVELAYNQVE 174
             V +    +E
Sbjct: 60  VEVTVDNQDLE 70


>gi|254168964|ref|ZP_04875803.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
 gi|197622070|gb|EDY34646.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469]
          Length = 277

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 30/151 (19%)

Query: 7   IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
            V+     E K    IG +    G    +  +  P                     GYV 
Sbjct: 133 AVKTTIGQEVKVARDIGMKAKIHGWKE-IFSVLAP-----------------YNLKGYVF 174

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
           ++    DKV   I+      G +    +   +                    +     VG
Sbjct: 175 VETSRPDKVLSLIRGIKDAKGVVRGEMHLEEIKHYLTPT------------PTIHRISVG 222

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           + V + +GPF   +  V  +DE K  + VE+
Sbjct: 223 DIVELVEGPFKGEHAKVIQIDEAKDEITVEL 253


>gi|326634532|pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP
           CLAMP DOMAIN
          Length = 163

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 31/155 (20%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  + + V+V    E+   + I  ++    L   +  I  PS                  
Sbjct: 1   MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR----------------- 41

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             GY+ ++A     V   I+      G L       P  + E           ++   + 
Sbjct: 42  VKGYIFVEAPNKGVVDEAIRGIRHARGVLPG---EVPFKEIEH---------FLEEKPAV 89

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
              E G+ V V  GPF      V  +DE K  V V
Sbjct: 90  SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124


>gi|237709842|ref|ZP_04540323.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455935|gb|EEO61656.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 14/163 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+ ++       +    +      +          IP    V +R GRK         
Sbjct: 1   MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 51

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
             + + AV ++      K                 V D ++   +       +       
Sbjct: 52  DLIFVHAVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 111

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             V    G +V ++ G F  + G+   V   + R  V + + G
Sbjct: 112 DEVNLRKGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 153


>gi|229525600|ref|ZP_04415005.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis
          VL426]
 gi|229339181|gb|EEO04198.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis
          VL426]
          Length = 106

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 3  PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           RWY++                + ++  L++   E   P   V  + +G++   +   FP
Sbjct: 2  KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52

Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVT 99
           Y+ ++        + T++ T  V+ F+  G +P  + 
Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQ 90


>gi|294674231|ref|YP_003574847.1| hypothetical protein PRU_1545 [Prevotella ruminicola 23]
 gi|294473416|gb|ADE82805.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 230

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 43/178 (24%), Gaps = 32/178 (17%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            RWY+++     E  A + +                 +P        KGR     +    
Sbjct: 44  KRWYVLRASYGREILAEQLLIQ---------SGVYAYVPKRYTYIEVKGRPKKVLQCLIA 94

Query: 63  GYVLIKAVMTDKVYHTIKD------------------TPKVIGFLGTGENPSPVTDSEIE 104
             V    +    +     +                      +        P  + + E+ 
Sbjct: 95  NIVFAYLIPRQAMMFVRNNDPDEPSPAPQLSEFLSFYYNHFVEGENWRNPPLTIPEHEML 154

Query: 105 HIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
           + +       +           ++  + V V  G F    G V      + RV V + 
Sbjct: 155 NFIRATCTNDENLLMLQGGDFHYKTDDEVEVICGQFKGVRGRVIRA-RGQQRVLVALT 211


>gi|323693007|ref|ZP_08107227.1| hypothetical protein HMPREF9475_02090 [Clostridium symbiosum
           WAL-14673]
 gi|323502888|gb|EGB18730.1| hypothetical protein HMPREF9475_02090 [Clostridium symbiosum
           WAL-14673]
          Length = 181

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  +  E++ VE +   L ++              +++    G  +      FP Y
Sbjct: 2   WYVIQTITGKEQELVELVYKMLPKTVYKECFF----LKRQLLKRLGGEWLEVTETLFPAY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           V +     D+V++ +K  P+    LG         + E    +  + A            
Sbjct: 58  VFLDLTNADEVFYELKRIPEFSKLLGDNLGEFIPLEEEERKFLELLCANESPVDNADKGA 117

Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                  + V+ +    +   DGP   F   +  ++  K    +E  I G      L   
Sbjct: 118 GYYLVRNTKVYLDAQGEIERLDGPLEYFKEKIIRLNLRKRYALIETAIRGEQQTAMLGIK 177

Query: 172 QVEK 175
            +EK
Sbjct: 178 -LEK 180


>gi|261403043|ref|YP_003247267.1| NusG antitermination factor [Methanocaldococcus vulcanius M7]
 gi|261370036|gb|ACX72785.1| NusG antitermination factor [Methanocaldococcus vulcanius M7]
          Length = 147

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 51/172 (29%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK     +  R  +  LD                              GYV
Sbjct: 3   FAVRTMVGQEKNIAGLMASRAEKEQLD-------------------VHSILASESLKGYV 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     V   IK  P++ G +    +   +                         E 
Sbjct: 44  LVEAETKGDVEELIKGMPRIRGIVPGTISIEEIEPLLTPK------------KIIENIEK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  V +E+       P+ L    V KIV
Sbjct: 92  GDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENAAVPIPITLPVEGV-KIV 142


>gi|254501341|ref|ZP_05113492.1| hypothetical protein SADFL11_1378 [Labrenzia alexandrii DFL-11]
 gi|222437412|gb|EEE44091.1| hypothetical protein SADFL11_1378 [Labrenzia alexandrii DFL-11]
          Length = 202

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 24/183 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W +V+   NCE +A ES+    S +GL   +  + +  +   +  +  K          Y
Sbjct: 31  WIVVRSNPNCESRAAESL----SAAGLIAWLPMLPVLRKNSRTRNEFDKSRPLC---TRY 83

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + +         +  + T +V+   G  E      +    HI+ + +  V          
Sbjct: 84  LFVALD-----RYKGQSTSEVVVCDGV-EKVLSFDEENRPHIVPKAQMRVIVEQCWNAIT 137

Query: 125 VGERVCVSD---GP--------FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G    V     G         F    G V   DE K  V   V +FGR   V++A ++V
Sbjct: 138 EGNLSKVKHFDIGAVFGLLADEFDGVTGTVTGYDEAKGIVEGLVPMFGREMAVKVAVDKV 197

Query: 174 EKI 176
           + +
Sbjct: 198 KAV 200


>gi|11498148|ref|NP_069373.1| transcription antitermination protein NusG [Archaeoglobus fulgidus
           DSM 4304]
 gi|2650084|gb|AAB90698.1| LSU ribosomal protein L24A (rpl24A) [Archaeoglobus fulgidus DSM
           4304]
          Length = 150

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 32/157 (20%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ R++ V+  +N E+     +     +  L   V  I  P                 + 
Sbjct: 1   MS-RFFAVKTTANQERVVANLMDMAARKHNL--KVYSILAP-----------------KE 40

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             GY++++A   D +   I+  P V G +    + S +                    ++
Sbjct: 41  LKGYIIVEAETPDDLLKAIRGLPHVKGVVKGEISFSEIEHFLTPK------------KAA 88

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                G++V +  GPF     IVK VDE K+ + VE+
Sbjct: 89  EQIREGDKVEIVSGPFKGEMAIVKRVDEAKNEITVEL 125


>gi|18978362|ref|NP_579719.1| transcription antitermination protein NusG [Pyrococcus furiosus DSM
           3638]
 gi|320089854|pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus
           Transcription Elongation Factor Spt45
 gi|320089856|pdb|3P8B|D Chain D, X-Ray Crystal Structure Of Pyrococcus Furiosus
           Transcription Elongation Factor Spt45
 gi|18894196|gb|AAL82114.1| transcription antitermination protein nusG [Pyrococcus furiosus DSM
           3638]
          Length = 152

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 31/155 (20%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  + + V+V    E+   + I  ++    L   +  I  PS                  
Sbjct: 1   MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR----------------- 41

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             GY+ ++A     V   I+      G L       P  + E           ++   + 
Sbjct: 42  VKGYIFVEAPNKGVVDEAIRGIRHARGVLPG---EVPFKEIEH---------FLEEKPAV 89

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
              E G+ V V  GPF      V  +DE K  V V
Sbjct: 90  SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124


>gi|300711886|ref|YP_003737700.1| NusG antitermination factor [Halalkalicoccus jeotgali B3]
 gi|299125569|gb|ADJ15908.1| NusG antitermination factor [Halalkalicoccus jeotgali B3]
          Length = 145

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+  ++ E+   + I  R   +     +     P                      YV
Sbjct: 4   YAVKTTASQERTVADMIMNREEPA-----IHAALAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           ++++     +   + + P     +    + + V                           
Sbjct: 42  MVESDDHAIIERVLDEIPHARSIVPGQSSITEVEHFLSPK------------PDVEGIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|253567525|ref|ZP_04844959.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251943661|gb|EES84247.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 279

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV +++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180


>gi|290558848|gb|EFD92240.1| KOW domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 158

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
           ++    +   VG+ V V  GPF      VK V++EK  + V         P+ +  N
Sbjct: 90  EKKQQKIDVNVGDVVKVLSGPFKGETATVKGVNKEKQELTVM--FLESAVPINVNIN 144


>gi|255013307|ref|ZP_05285433.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           sp. 2_1_7]
          Length = 186

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 4   RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +    +S+   LSR       + E   PS   V    G+ VN+
Sbjct: 27  RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85

Query: 57  ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111
           +R     YV I++ + +     +K T  +  F      G   +   ++D E+ ++    E
Sbjct: 86  KRPLLFNYVFIRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143

Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
           +        V        G+RV ++ G F      V 
Sbjct: 144 SYSNELPVYVPDSNRLLKGDRVRITSGYFTGMEAEVV 180


>gi|167755355|ref|ZP_02427482.1| hypothetical protein CLORAM_00869 [Clostridium ramosum DSM 1402]
 gi|167704294|gb|EDS18873.1| hypothetical protein CLORAM_00869 [Clostridium ramosum DSM 1402]
          Length = 232

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 16/173 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WYI+      + K  + +    +   +        +P    +  + G+KV +E   FP
Sbjct: 65  MNWYIIFA---NDNKINDLLLYFNNHPEM-----TAFVPKIEKLMKKDGKKVFAEVPMFP 116

Query: 63  GYVLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
            Y+ I++    + ++ I     KD    +  + + E       +  + ++  +       
Sbjct: 117 NYIFIESEFNSQEFYQIIESLEKDMDSTMRIMQSDEQKVLSLANNEKELLESLFNDDHLI 176

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR--VTPVEL 168
             S+      ++ V  GP      ++K +D  K    +   +FG+    P+E+
Sbjct: 177 TRSMGTITDSKLIVQKGPLVGKEEMIKKIDRHKRVAFIG-DVFGKTMKVPLEV 228


>gi|220922583|ref|YP_002497885.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219947190|gb|ACL57582.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 196

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 4/144 (2%)

Query: 31  LDHLVTEITIP-SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89
           L         P    VV      K    R  FPGY  +     ++ +  I   P V   +
Sbjct: 53  LQQAGFATLAPGRTAVVRQASSGKRLVRRPVFPGYAFVGKRP-EQSWRDILRVPGVRALV 111

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
            TGE P+ +    +  ++   +             VG++V + D  +    G V     E
Sbjct: 112 TTGEAPTELPPW-MMKMLIAADEMGAYDRPRPQLAVGDKVRIRDELWQGLIGEVMRA-PE 169

Query: 150 KSRVHVEVVIFGRVTPVELAYNQV 173
             R+ V +  FG+   + +  +++
Sbjct: 170 GRRIAVLLKAFGKKHVLSVDVDRL 193


>gi|312136370|ref|YP_004003707.1| lsu ribosomal protein l24a [Methanothermus fervidus DSM 2088]
 gi|311224089|gb|ADP76945.1| LSU ribosomal protein L24A [Methanothermus fervidus DSM 2088]
          Length = 150

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  + Y ++  +  EK     +  ++  S +D  ++ I +                    
Sbjct: 1   MKSKIYALKTSAGQEKNVARMLTKKVKNSDID--ISAILVSES----------------- 41

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             GY+L+++     + + I   P + G +        +                      
Sbjct: 42  LKGYILVESSSKLDMRNPIFRMPHLRGIVEGSVKFKEIEKFLKP------------EPIV 89

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
              + G  V +  GPF      V  VDE K  V +E++      PV +  +QV 
Sbjct: 90  TSIKRGSIVELIAGPFKGERAKVIRVDESKEEVVLELIEAAVPIPVTVKADQVR 143


>gi|222479330|ref|YP_002565567.1| NusG antitermination factor [Halorubrum lacusprofundi ATCC 49239]
 gi|222452232|gb|ACM56497.1| NusG antitermination factor [Halorubrum lacusprofundi ATCC 49239]
          Length = 150

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 29/169 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  E+   + +  +                      + + + V +       YV
Sbjct: 4   FSVKTTARQERTVADMLAEK---------------------EMPEIQAVIAPD-QLTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A         + + P   G +   E P+    SE+EH ++                 
Sbjct: 42  MVEATDGSVFARILDEIPHARGVIQGSEGPAESPFSEVEHFLSPTPDVE-------GIAE 94

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 95  GDIVELIAGPFKGEKARVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 143


>gi|323486157|ref|ZP_08091486.1| hypothetical protein HMPREF9474_03237 [Clostridium symbiosum
           WAL-14163]
 gi|323400483|gb|EGA92852.1| hypothetical protein HMPREF9474_03237 [Clostridium symbiosum
           WAL-14163]
          Length = 181

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY++Q  +  E++ V+ +   L ++              +++    G  +      FP Y
Sbjct: 2   WYVIQTITGKEQELVDLVYKMLPKTVYKECFF----LKRQLLKRLGGEWLEVTETLFPAY 57

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115
           V +     D+V++ +K  P+    LG         + E    +  + A            
Sbjct: 58  VFLDLTNADEVFYELKRIPEFSKLLGDNLGEFIPLEEEERKFLELLCANESPVDNADKGA 117

Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171
                  + V+ +    +   DGP   F   +  ++  K    +E  I G      L   
Sbjct: 118 GYYLVRNTKVYLDAQGEIERLDGPLEYFKEKIIRLNLRKRYALIETAIRGEQQTAMLGIK 177

Query: 172 QVEK 175
            +EK
Sbjct: 178 -LEK 180


>gi|322371074|ref|ZP_08045626.1| NusG antitermination factor [Haladaptatus paucihalophilus DX253]
 gi|320549064|gb|EFW90726.1| NusG antitermination factor [Haladaptatus paucihalophilus DX253]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+  ++ E+   + I  R         +  +  P                      YV
Sbjct: 4   YAVKTTASQERTVADMIINREEPE-----IHAVLAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     +   +++ P     +    N S     E+EH ++                 
Sbjct: 42  MVEADDHRVINRVLEEIPHARSMVPGESNIS-----EVEHFLSPTPDVE-------GIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|284165911|ref|YP_003404190.1| NusG antitermination factor [Haloterrigena turkmenica DSM 5511]
 gi|284015566|gb|ADB61517.1| NusG antitermination factor [Haloterrigena turkmenica DSM 5511]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+  ++ E+   + I  R         +     P                      YV
Sbjct: 4   YAVKTTASQERTVADMIINREEPE-----IHAALAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           ++++     +   ++D P     +    + S V                           
Sbjct: 42  MVESEGDAVLNRVLEDIPHARSIVPGKSDISEVEHFLSPK------------PDVEGIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|150010187|ref|YP_001304930.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149938611|gb|ABR45308.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 365

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 52/172 (30%), Gaps = 19/172 (11%)

Query: 4   RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55
           RWY +          +     K +++   R  R G    + E   PS        G+ VN
Sbjct: 26  RWYAL-TLPTAIGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82

Query: 56  SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112
           + +     YV I A   +                  +G       ++D E+E +    E+
Sbjct: 83  TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142

Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                   V        G+RV ++ G F      V  V        V V I 
Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193


>gi|150005956|ref|YP_001300700.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|254881848|ref|ZP_05254558.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641132|ref|ZP_07995835.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
 gi|149934380|gb|ABR41078.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|254834641|gb|EET14950.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387263|gb|EFV68139.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
          Length = 182

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 14/163 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+ ++       +    +      +          IP    V +R GRK         
Sbjct: 7   MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
             + + +V ++      K                 V D ++   +       +       
Sbjct: 58  DLIFVHSVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 117

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             V    G +V ++ G F  + G+   V   + R  V + + G
Sbjct: 118 DEVNLRKGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159


>gi|262384292|ref|ZP_06077427.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293995|gb|EEY81928.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 373

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +             R      V E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGETVFEYFAPSYVEVRKVGGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G+      + D E+ ++    EA 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146

Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G F      V 
Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181


>gi|169350050|ref|ZP_02866988.1| hypothetical protein CLOSPI_00790 [Clostridium spiroforme DSM 1552]
 gi|169293263|gb|EDS75396.1| hypothetical protein CLOSPI_00790 [Clostridium spiroforme DSM 1552]
          Length = 171

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 13/171 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++        K       ++ +        +  IP        K  K    +  +P
Sbjct: 5   MYWYVIHA------KVDRG--SKIVKFFNSQKGVDAFIPKIEKWHNVKSVKDYVIKDLYP 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIMNQVEAAVQRPV 118
            YV +K+ M ++ ++            G GE              + +M ++        
Sbjct: 57  DYVFVKSDMDNEAFNKKFK-EFFESIEGFGELLEYEGVYALKDTEQDLMEKLFNGGHIIK 115

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            S+   V +++ V  GP    + +V  ++       ++   F +   V L 
Sbjct: 116 RSIGNIVDKKLIVDTGPLLGLDDLVVKINRHHRVATLQTEFFDKKIMVPLE 166


>gi|153808766|ref|ZP_01961434.1| hypothetical protein BACCAC_03066 [Bacteroides caccae ATCC 43185]
 gi|149128592|gb|EDM19810.1| hypothetical protein BACCAC_03066 [Bacteroides caccae ATCC 43185]
          Length = 182

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 17/182 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY+++                 +   L     E+  P +  + ++ G+++  E  F  
Sbjct: 10  MHWYVMR-------DLKRPNAKLPAYKQLSDEHLEVFTPMQWRLKLKNGKRIREEVPFMQ 62

Query: 63  GYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----R 116
             + I       D     I          G    P  V D ++E  +  V  +       
Sbjct: 63  DLLFIHDTREVLDLFVRKIPTLQYRYQKGGGYCQPMMVADLDMERFIRAVRGSENPKYYL 122

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV-VIFGRVTPVELAYNQVE 174
           P        G  + +  GPF  + G +      K  R+ VE+   F     VE+  + +E
Sbjct: 123 PEEISDTMYGRMIRIIGGPFEGYEGRLLTTRGSKVKRLLVELPNFF--SVGVEVNPDLIE 180

Query: 175 KI 176
            I
Sbjct: 181 II 182


>gi|253571872|ref|ZP_04849277.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838469|gb|EES66555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 105

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 78  TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFFEVGERVCVSDGPF 136
               T      +    +P+ + D ++      ++ + +   ++S     GE+V V  GP 
Sbjct: 4   LSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNSSPLARGEKVRVIKGPL 63

Query: 137 ASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
               G + NVD  KS++ V + + G    V++    VE I+
Sbjct: 64  TGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPVGYVEPIM 102


>gi|15668548|ref|NP_247346.1| transcription antitermination protein NusG [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2499343|sp|Q57818|NUSG_METJA RecName: Full=Putative transcription antitermination protein nusG
 gi|1591079|gb|AAB98361.1| LSU ribosomal protein L24A [Methanocaldococcus jannaschii DSM 2661]
          Length = 147

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 50/172 (29%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK     +  R  +  LD                              GYV
Sbjct: 3   FAVRTMVGQEKNIAGLMASRAEKEQLD-------------------VYSILASESLKGYV 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     V   IK  P+V G +        +                         E 
Sbjct: 44  LVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTPK------------KIIENIEK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  V +E+       P+ L    V KIV
Sbjct: 92  GDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENAAVPIPITLPVEGV-KIV 142


>gi|329964950|ref|ZP_08301958.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328524591|gb|EGF51659.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +  S  E    + I        +D    E  +P+  VV+  K R+  S      
Sbjct: 6   KYWFAARTLSKQEFAVQKRIEKLKLEEKMD---VECYLPTRTVVTQLKYRRKRSIVPVAR 62

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           G + I A  T +    I +   V  F     +  +   V D +++  M  ++        
Sbjct: 63  GLIFIHA--TKQCACDIPNIYGVQVFYMKDLSTHSMLVVPDKQMQDFMFVMDLNPDGVSF 120

Query: 120 SVFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                 +G++V V  G F+   G    +  E ++ +V + I G
Sbjct: 121 DNEPLTIGKKVTVIKGEFSGIEG---EIATEANKTYVVIRITG 160


>gi|301308790|ref|ZP_07214742.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300833314|gb|EFK63932.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +             R      + E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGEALFEYFAPSYVEVRKVGGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G+      + D E+ ++    EA 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146

Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G F      V 
Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181


>gi|255016016|ref|ZP_05288142.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           sp. 2_1_7]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +             R      + E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGEALFEYFAPSYVEVRKVGGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G+      + D E+ ++    EA 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146

Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G F      V 
Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181


>gi|319901978|ref|YP_004161706.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319417009|gb|ADV44120.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT-EITIPSERVVSVRKGRKVNSERRFF 61
             W+  +  S  E         R+ +  L+  +  E  +P+  VV+  K R+  S     
Sbjct: 6   KYWFAARTLSKQEFAVQ----KRIEKLNLEEKMDVECYLPTRTVVTQLKYRRKRSVVPVA 61

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVS 119
            G + I A              +V        +   V   +       V           
Sbjct: 62  RGLIFIHATKQSACDIPNIYGVQVFYMKDLSTHSMLVVPDKQMQDFMFVMDLNPDGVSFD 121

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           +    +G +V V  G F+   G    +  E ++ +V + I G
Sbjct: 122 NEPLTIGRKVTVVKGEFSGIEG---EIATEANKTYVVIRITG 160


>gi|218529585|ref|YP_002420401.1| hypothetical protein Mchl_1609 [Methylobacterium chloromethanicum
           CM4]
 gi|218521888|gb|ACK82473.1| hypothetical protein Mchl_1609 [Methylobacterium chloromethanicum
           CM4]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 23/193 (11%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-TEITIPSERVVSVRKGRKVNSERRF 60
             +WY+     + E  A  S+     R   +        +P E          +   RR 
Sbjct: 44  ALKWYVCTTAPSRELSAAASVRQATLRGRREGETPFAAYVPCEFFWHRAIRSNLRVPRRE 103

Query: 61  FPGYVLIKAVMTDKVYHTI--------------KDTPKVIGFLGTGENPSPVTDSEIEHI 106
               +L   ++   +                  ++   + G LG         + E    
Sbjct: 104 IQRPILRHYILVGVLGGLCDETLAALRDRDREGRNVHGLAGILGAPGIGPLAMNGEGLRW 163

Query: 107 MNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
           +               +S   + GE V    G F+ F G      E  +   + + +  R
Sbjct: 164 LRAQGEDEIAGATNRSASGTIQPGEDVRAGSGVFSGFLGKFIGTAEGGTVGVIALDM--R 221

Query: 163 VTP--VELAYNQV 173
            T   V L    V
Sbjct: 222 STSCEVRLPIEDV 234


>gi|294775545|ref|ZP_06741055.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
 gi|294450595|gb|EFG19085.1| transcription termination/antitermination factor NusG [Bacteroides
           vulgatus PC510]
          Length = 182

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 14/163 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+ ++       +    +      +          IP    V +R GRK         
Sbjct: 7   MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
             + + +V ++      K                 V D ++   +       +       
Sbjct: 58  DLIFVHSVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 117

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             V    G +V ++ G F  + G+   V   + R  V + + G
Sbjct: 118 DEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159


>gi|212693036|ref|ZP_03301164.1| hypothetical protein BACDOR_02543 [Bacteroides dorei DSM 17855]
 gi|212664403|gb|EEB24975.1| hypothetical protein BACDOR_02543 [Bacteroides dorei DSM 17855]
          Length = 184

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 14/163 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+ ++       +    +      +          IP    V +R GRK         
Sbjct: 9   MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 59

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118
             + + AV ++      K                 V D ++   +       +       
Sbjct: 60  DLIFVHAVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 119

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
             V    G +V ++ G F  + G+   V   + R  V + + G
Sbjct: 120 DEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 161


>gi|150006961|ref|YP_001301704.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149935385|gb|ABR42082.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +             R      + E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGEALFEYFAPSYVEVRKVGGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G+      + D E+ ++    EA 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146

Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G F      V 
Sbjct: 147 SNELPVYVPESARLLKGDRVRITSGYFTGMEAEVV 181


>gi|298377389|ref|ZP_06987342.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298265803|gb|EFI07463.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 373

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +             R      + E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGETLFEYFAPSYVEVRKVGGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G+      + D E+ ++    EA 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146

Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G F      V 
Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181


>gi|148230569|ref|NP_001084514.1| G patch domain and KOW motifs-containing protein [Xenopus laevis]
 gi|82185478|sp|Q6NU07|GPKOW_XENLA RecName: Full=G patch domain and KOW motifs-containing protein
 gi|46250332|gb|AAH68795.1| MGC81356 protein [Xenopus laevis]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
           LG G + S +   E +     ++   +    S     G  V +  G +    G V+ +D 
Sbjct: 193 LGLGADRSALKHLEPQKPRKPLKPGEEPEEESKGLGTGSAVQIQSGAYKDMYGKVEGIDP 252

Query: 149 EKSRVHVEVVIFGRVTPVEL 168
           + SR  + + I G+V  V L
Sbjct: 253 DNSRAMITLAIGGKVVTVSL 272


>gi|269986702|gb|EEZ92982.1| NusG antitermination factor [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 158

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 32/152 (21%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           +I++V    E +A+E +  +L+R                      G     +     GY+
Sbjct: 13  FIIRVTIGREMQALERLQSQLARVN--------------------GIYSIVKPYSLKGYI 52

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A   + + + I +   + G +              E   ++    +++   ++   +
Sbjct: 53  IVEADSRESISNLIYNIKHIRGIMN------------KELSKDEALKTIEKKKQNIDINI 100

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V V  GPF      VK V++EK  + V  
Sbjct: 101 GDVVKVLSGPFKGETATVKAVNKEKEELTVMF 132


>gi|256842037|ref|ZP_05547542.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736353|gb|EEU49682.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 373

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 4   RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56
           RWY++            +             R      + E   PS   V    G+ VN+
Sbjct: 28  RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGETLFEYFAPSYVEVRKVGGKLVNT 86

Query: 57  ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113
            R     YV I++ + +                   G+      + D E+ ++    EA 
Sbjct: 87  RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146

Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144
                  V        G+RV ++ G F      V 
Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181


>gi|169351143|ref|ZP_02868081.1| hypothetical protein CLOSPI_01922 [Clostridium spiroforme DSM 1552]
 gi|169292205|gb|EDS74338.1| hypothetical protein CLOSPI_01922 [Clostridium spiroforme DSM 1552]
          Length = 163

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 15/171 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             WY++ V S       E +   L++        E  +P                   F 
Sbjct: 1   MNWYVLYVLSYK----KEQLIKYLNKYE----DVEAFVPKYEYYRRVTKDYEIK--PMFN 50

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT----DSEIEHIMNQVEAAVQRPV 118
           GY+ +K+ M    ++++          G  +            E   + +++        
Sbjct: 51  GYIFVKSTMNQLEFNSLL-MKMSKEKDGLLKQLVYPDTSALKKEEIEMFDRLLDENYVVK 109

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
            S  +   +R  + +GP   F   ++ VD+     ++ ++   R     L 
Sbjct: 110 MSQAYLQDKRAIIINGPLKYFENDIRKVDKYNKVAYLNLLFMNREIKAGLE 160


>gi|256811382|ref|YP_003128751.1| NusG antitermination factor [Methanocaldococcus fervens AG86]
 gi|256794582|gb|ACV25251.1| NusG antitermination factor [Methanocaldococcus fervens AG86]
          Length = 147

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 51/172 (29%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK     +  R  +  LD                              GYV
Sbjct: 3   FAVRTMVGQEKNIAGLMASRAEKEQLD-------------------VYSILASESLKGYV 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     V   IK  P+V G +        +                         E 
Sbjct: 44  LVEAESKGDVEELIKGMPRVRGIVPGTVAIEEIEPLLTPK------------KIIENIEK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  V +E+       P+ L+   V KI+
Sbjct: 92  GDVVEIIAGPFKGERAKVIRVDKNKEEVTLELENATVPIPITLSVEGV-KII 142


>gi|330998531|ref|ZP_08322351.1| hypothetical protein HMPREF9442_03465 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329568129|gb|EGG49948.1| hypothetical protein HMPREF9442_03465 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 14/179 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           TP+WY+++  S    K         +   L     +   P  R V  + G++   +  + 
Sbjct: 4   TPQWYVLRDLSRPNSK-------LSAFDKLTGKGIKCFTPLVRKVVTQGGKQEWKDVPYM 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-----TDSEIEHIMNQVEAAVQR 116
              +   +                  ++  G            D  I  + + + +   R
Sbjct: 57  RDLLFAHSTHDVLDPFMAPGLRLQYRYVHGGFKEPMTVREADMDCFIRAVSSSISSKYYR 116

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVVI-FGRVTPVELAYNQV 173
           P          R+ +  GP   + G +  V      R+ VE+ +       VE  + Q+
Sbjct: 117 PEEITPAMRNRRIRIIGGPLHGYEGSLVTVRGTTVKRLLVELPMLLAAAVEVEPEFIQL 175


>gi|289192633|ref|YP_003458574.1| NusG antitermination factor [Methanocaldococcus sp. FS406-22]
 gi|288939083|gb|ADC69838.1| NusG antitermination factor [Methanocaldococcus sp. FS406-22]
          Length = 147

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 50/172 (29%), Gaps = 32/172 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK     +  R  +  L+                              GYV
Sbjct: 3   FAVRTMVGQEKNIAGLMASRAEKEQLN-------------------VYSILASESLKGYV 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A     V   IK  P+V G +        +                         E 
Sbjct: 44  LVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTPK------------KIIENIEK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177
           G+ V +  GPF      V  VD+ K  V +E+       P+ L    V KIV
Sbjct: 92  GDVVEIIAGPFKGERAKVIRVDKNKEEVTLELENAAVPIPITLPVEGV-KIV 142


>gi|189467016|ref|ZP_03015801.1| hypothetical protein BACINT_03398 [Bacteroides intestinalis DSM
           17393]
 gi|189435280|gb|EDV04265.1| hypothetical protein BACINT_03398 [Bacteroides intestinalis DSM
           17393]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 18/160 (11%)

Query: 4   RWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            WY ++  YS               ++ LD    E  IP      VR   K+        
Sbjct: 9   NWYPLRITYSR----------ELALKNYLDSKQIENFIPMRYEYIVRNECKIRKLVPAIH 58

Query: 63  GYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
             V +++    + +         P         + P  + D ++   +       Q+   
Sbjct: 59  NLVFVRSTRKQLEEIKEAKGAILPIRYIMDCETQQPITIPDVQMRSFIAVAGNCDQQVVY 118

Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
              +++  + G+RV ++ G F    G    + +++  V V
Sbjct: 119 LDPTTINLKRGQRVRITGGVFEGVEGEFVRIKDDRRVVVV 158


>gi|116783316|gb|ABK22888.1| unknown [Picea sitchensis]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           G  V V  G F  F G +K +D +  +  + +++ G   PV + 
Sbjct: 310 GSPVRVISGAFTEFTGHLKEIDADAGKAKLMLMMSGHELPVNME 353



 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFFP 62
           +W+++ V  N E+   E +           +  +  +P       ++ G    S++R FP
Sbjct: 80  QWWMLLVPRNSERLVAEDLSKAFPSE-FPDIEFQAYLPEIPSRRKLKNGSYSESKKRMFP 138

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLG--------TGENPSPVTDSEIEHIMNQVEAAV 114
           GY+ I+  +  +++  I++TP+V GF+G            P PV  +E+E    +V+   
Sbjct: 139 GYLFIRCPLNKEIHDFIRNTPRVRGFVGRKVGSMIRQMIKPKPVPIAEMEETFRKVKEEQ 198

Query: 115 QRPVSSVFFE 124
           +     +  E
Sbjct: 199 EAYDIEIQEE 208


>gi|53712820|ref|YP_098812.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           fragilis YCH46]
 gi|52215685|dbj|BAD48278.1| putative transcriptional regulator UpxY homolog [Bacteroides
           fragilis YCH46]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +++    E     ++   L+  G+++      IP     +++  R+V       
Sbjct: 12  ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62

Query: 62  PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
              V +++  +  D +  +   T  +   +    +   +           V A       
Sbjct: 63  HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 122

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143
               S +    G RV ++ G F    G  
Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151


>gi|58332632|ref|NP_001011390.1| G patch domain and KOW motifs [Xenopus (Silurana) tropicalis]
 gi|56788865|gb|AAH88579.1| G patch domain and KOW motifs [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
           LG G + S + D E +     ++   +    S     G  V +  G      G V+ VD 
Sbjct: 195 LGLGADRSALKDLEPQKPRKPLKPGEKLEEESRGLGKGSSVQIQSGAHKDLYGKVEGVDP 254

Query: 149 EKSRVHVEVVIFGRVTPVEL 168
           + SR  +++ I G+V  V L
Sbjct: 255 DNSRAMIKLAIGGKVVTVSL 274


>gi|329954481|ref|ZP_08295572.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
 gi|328527449|gb|EGF54446.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 19/164 (11%)

Query: 3   PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
             W+ ++V YS        ++   L    +++      IP      ++ G++V       
Sbjct: 28  KCWFAIRVSYSR-----ELALKAILDAENIEN-----FIPMRYEYIMKSGKRVRKLLPAI 77

Query: 62  PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
              V + +    +           P           P  + ++++   +       +  +
Sbjct: 78  HNLVFVYSTRKRIDALKDKLEPSMPIRFIMNREHCRPVVIPEAQMRSFILVAGNCDEAVL 137

Query: 119 SSVFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                E     G++V ++ G F    G    +  ++ RV V + 
Sbjct: 138 YVEPAELHLVKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 180


>gi|325181255|emb|CCA15669.1| transcription elongation factor SPT5 putative [Albugo laibachii
           Nc14]
 gi|325181812|emb|CCA16267.1| transcription elongation factor SPT5 putative [Albugo laibachii
           Nc14]
          Length = 1095

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 58  RRFFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           +     ++ +     MT+      +     +   G+    + + +S +  +         
Sbjct: 606 KHIHRCFLFLHNNRVMTNAGMFVAR--AHQVILSGSKARSNMIQNSTLPRMNGARPPRND 663

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           R  +     +G+ V +  G +  + GIV  VDE   +V VE+    + T V++   +V
Sbjct: 664 RRNTREHEMIGKTVKMKKGRWKGYIGIV--VDESDQKVKVEIHC--KATTVDVDRQEV 717



 Score = 35.8 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKS--RVHVEVVIFGRVTPVELAYNQ 172
            + +VG+ + V  G ++   G V  VD+ +      V V    +   V +   Q
Sbjct: 457 KYVKVGDHIKVVSGMYSGETGTVVAVDDTEGAPVAIVLVDSMAKEIQVRVQDLQ 510



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 1/111 (0%)

Query: 47  SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
             R          +   Y     ++ +   + +  T +V   L      + V + E +  
Sbjct: 327 RRRYPATGEMMDFYDNDYYQDGFLIKEVNINMMLQTEEVNPRLDEINKFAAVAEREDDGN 386

Query: 107 MNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              + +       + V    G+ V V +G   +  GIV + +   + V V 
Sbjct: 387 QELLASMETGDWKNKVELAKGDTVRVVEGDLLNLMGIVVSTNTANNLVRVM 437


>gi|218129971|ref|ZP_03458775.1| hypothetical protein BACEGG_01554 [Bacteroides eggerthii DSM 20697]
 gi|317476812|ref|ZP_07936055.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987829|gb|EEC54155.1| hypothetical protein BACEGG_01554 [Bacteroides eggerthii DSM 20697]
 gi|316906987|gb|EFV28698.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 172

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 49/163 (30%), Gaps = 17/163 (10%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+ ++V  + E      +              E  IP      ++ G++V        
Sbjct: 1   MNWFAIRVSYSRELALKAILDAEK---------IENFIPMRYEYVIKSGKRVRRLLPAIH 51

Query: 63  GYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
             V + +    +           P           P  + D+++   +    +  +    
Sbjct: 52  NLVFVHSTRKRIDALKDELESSMPIRFIMNREFCRPVVIPDAQMRSFILVAGSHEEAILY 111

Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              + +    G++V ++ G F    G    +  ++ RV V + 
Sbjct: 112 VEPAELHLAKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 153


>gi|254477058|ref|ZP_05090444.1| hypothetical protein RR11_2897 [Ruegeria sp. R11]
 gi|214031301|gb|EEB72136.1| hypothetical protein RR11_2897 [Ruegeria sp. R11]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 36/202 (17%)

Query: 2   TPRWYIVQVYSN-------------CE-----------KKAVESIGG-RLSRSGLDHLVT 36
              WY V++ +               E           +K   S     +    L     
Sbjct: 11  EMDWYAVKLKARPNGGRRETVLGVEFETYRARNGQMARRKVKGSGQRVFVPELVLQKAGF 70

Query: 37  EITIP---SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
           E+ +P       V+     +    R    G++ +        +H +     V G +G G 
Sbjct: 71  EVFLPIKKEWSRVNRYSSEQKLKCRPAMEGWLFVGWAAGQARFHELMALDVVSGVMGAGG 130

Query: 94  NPSPVTDSEIEHIMNQV------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
            P  ++D+++  +M +         A       V F VG+ V V  GPF      V  +D
Sbjct: 131 QPVRISDAKVRFLMRKFGGGRLRRKASNVEAEPVRFSVGDLVRVDAGPFEGQ--TVSLLD 188

Query: 148 EEKSRVHVEVVIFGRVTPVELA 169
                    + + G+   V+L 
Sbjct: 189 VSGGSARAVMTLLGKDVEVDLE 210


>gi|265762924|ref|ZP_06091492.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255532|gb|EEZ26878.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 16/149 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +++    E     ++   L+  G+++      IP     +++  R+V       
Sbjct: 12  ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62

Query: 62  PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V +++    +           P           P  V DS++ + M       +   
Sbjct: 63  HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMCNFMAVSANYDESLL 122

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143
               S +    G RV ++ G F    G  
Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151


>gi|218884416|ref|YP_002428798.1| Putative transcription antitermination protein nusG
           [Desulfurococcus kamchatkensis 1221n]
 gi|218766032|gb|ACL11431.1| Putative transcription antitermination protein nusG
           [Desulfurococcus kamchatkensis 1221n]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 32/174 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           Y V+     E      IG R+      G +  +  I IP                     
Sbjct: 15  YAVKTTLGRELDTALIIGMRIDEMRARGEETSIGSIIIP-----------------PNVR 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV I+     ++Y  I D   +         P  V+  E E ++       +       
Sbjct: 58  GYVFIEVERLGELYKVISDIRYIK-----AGRPIKVSYEEFEKLLKPKPVIEE------- 105

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             VG+ V ++ GPF      +  +D  K+ + V ++      P+ +  + V+KI
Sbjct: 106 LNVGDEVEITRGPFRGMRARIAGIDRNKNMLTVNILEAAFTIPITIPGDYVKKI 159


>gi|301629057|ref|XP_002943665.1| PREDICTED: 50S ribosomal protein L1-like [Xenopus (Silurana)
          tropicalis]
          Length = 196

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 4  RWYIVQVYSNCEKKAVESIGGRLSR 28
          RWYIV  YS  EK    +I  R+ R
Sbjct: 22 RWYIVHAYSGMEKAVERNITERIMR 46


>gi|257051976|ref|YP_003129809.1| transcription antitermination protein NusG [Halorhabdus utahensis
           DSM 12940]
 gi|256690739|gb|ACV11076.1| NusG antitermination factor [Halorhabdus utahensis DSM 12940]
          Length = 145

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  ++ E+   + I  R      +  V     P                      YV
Sbjct: 4   FAVKTTASQERTVADMIMNRE-----EDSVHAALAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A         + + P   G +    +       E+EH ++                 
Sbjct: 42  MVEAEDASVFERILDEIPHANGVVQGKSSIK-----EVEHFLSPTPDVE-------GIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|289806726|ref|ZP_06537355.1| transcription antitermination protein NusG [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 38

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 3  PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL 34
           RWY+VQ +S  E +   S+   +    ++ L
Sbjct: 7  KRWYVVQAFSGFEGRVATSLREHIKLHNMEEL 38


>gi|13542274|ref|NP_111962.1| transcription antitermination protein NusG [Thermoplasma volcanium
           GSS1]
 gi|14325707|dbj|BAB60610.1| transcription termination-antitermination factor [nusG]
           [Thermoplasma volcanium GSS1]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 22/169 (13%)

Query: 7   IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
            ++     E +    +  +  R   +        PSE    +              GY+ 
Sbjct: 138 ALKTTVGSEVQVATDLNNKAERDRDERSQGGEKQPSEVFAIMAPYE--------IKGYIF 189

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
           ++ +  D++ +  KD     G +    +   +                    +    E+G
Sbjct: 190 VETMHPDRISYLAKDIRGYKGMVSGKIDLEEIAHYLTPK------------PAVSGLELG 237

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQVE 174
             V + +GPF      + ++D  K  V V  V       PV +    + 
Sbjct: 238 SLVELVEGPFKGEKAKIISIDSVKEEVTVQLVESM-VPIPVTVKAESIR 285


>gi|308805116|ref|XP_003079870.1| unnamed protein product [Ostreococcus tauri]
 gi|116058327|emb|CAL53516.1| unnamed protein product [Ostreococcus tauri]
          Length = 417

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 71  MTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG- 126
           M D++   I+    V+         E    V +        + E        +   EVG 
Sbjct: 306 MDDQIPRMIRKCVPVVKTDEQVKADEARVEVQEVARAGRQERDENDGDDLRPTSSSEVGA 365

Query: 127 ---ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168
              +R+ V DGPF  F G + + +++   V   + IFGR T V L
Sbjct: 366 ATYDRIEVHDGPFKGFKGFIVSENDD-GSVEATLAIFGRDTNVTL 409


>gi|255008330|ref|ZP_05280456.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +++    E     ++   L+  G+++      IP     +++  R+V       
Sbjct: 38  ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 88

Query: 62  PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
              V +++  +  D +  +   T  +   +    +   +           V A       
Sbjct: 89  HNLVFVRSSRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 148

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143
               S +    G RV ++ G F    G  
Sbjct: 149 YFEPSELNIRKGTRVRITGGLFEGVEGEF 177


>gi|84490055|ref|YP_448287.1| transcription antitermination protein NusG [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373374|gb|ABC57644.1| putative transcription antiterminator [Methanosphaera stadtmanae
           DSM 3091]
          Length = 147

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 31/171 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++V    EK     +   +        ++ I  P                     GY+
Sbjct: 3   YAMRVLIGQEKNVASLLAQSVKHEDTG--ISAILSPES-----------------MKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            +++  T  + H     P + G +            E +   +++++ +    S V  E 
Sbjct: 44  FVESDKTLDMRHPALKVPNLRGLV------------EGDVDFDELKSFLSPDQSIVNIEK 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G  V ++ GPF      V  +DE K  V +E++      PV +  +Q+  I
Sbjct: 92  GSIVELTSGPFKDEKAKVVRIDEAKEDVVLELIEAAVPIPVTVKGDQIRLI 142


>gi|296110023|ref|YP_003616972.1| NusG antitermination factor [Methanocaldococcus infernus ME]
 gi|295434837|gb|ADG14008.1| NusG antitermination factor [Methanocaldococcus infernus ME]
          Length = 146

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     EK     +  +  +  L+                              GY+
Sbjct: 3   FAVRTMGRQEKNVALLLSAKAEKENLN-------------------VSSILASDQLKGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A   +++   IK  PKV G++       P+ + E      ++   +++         
Sbjct: 44  FVEADNEEELKTLIKGVPKVKGYVRG---VIPLEEIEPLLSPKKIVEEIEK--------- 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VD+ K  + +E+
Sbjct: 92  GDVVEIVAGPFKGERAKVIRVDKNKEEITLEL 123


>gi|150004276|ref|YP_001299020.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|149932700|gb|ABR39398.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
          Length = 185

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 16/164 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
            +W+ ++       +    +         D       IP    + ++ G +         
Sbjct: 7   MQWFAMRATYRRGMQIKGLL---------DQKGINSFIPMRYEIHLKNGHRRRELVPVIR 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117
             V +    ++         P     +        +   E       V            
Sbjct: 58  DIVFVHTTQSELQR-IKYGIPYFQYMMDIRNGEKIIVPDEQMRRFIAVAGTYDEQIIFFS 116

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
              V    G +V ++ G F  + G+   V   + R  V + + G
Sbjct: 117 PDEVNLRKGTKVRITGGQFEGYEGVFVKVKGSRDR-RVVISLQG 159


>gi|53713117|ref|YP_099109.1| putative transcriptional regulatory protein UpxY-like protein
           [Bacteroides fragilis YCH46]
 gi|60681383|ref|YP_211527.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis NCTC 9343]
 gi|253566788|ref|ZP_04844240.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763209|ref|ZP_06091777.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|11023504|gb|AAG26461.1|AF285774_1 putative transcriptional regulatory protein [Bacteroides fragilis]
 gi|52215982|dbj|BAD48575.1| putative transcriptional regulatory protein UpxY homolog
           [Bacteroides fragilis YCH46]
 gi|60492817|emb|CAH07591.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis NCTC 9343]
 gi|251944351|gb|EES84840.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255817|gb|EEZ27163.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162839|emb|CBW22386.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis 638R]
          Length = 174

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    +S+    +   L++ +    +  +     ++      E     
Sbjct: 6   KYWFAARTRDKQEFAIRDSLEKLKTELDLNYYLPTQFVIRQLKYRRKR-----VEVPVIK 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSS 120
             + I+A   D    + K   ++            +   +       V           +
Sbjct: 61  NLIFIQATKQDACDISNKYNIQLFYMKDLLTRAMLIVPDKQMQDFIFVMDLDPNGVSFDN 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
               VG RV V  G F    G    +  E ++ +V + I G
Sbjct: 121 DHLSVGSRVQVVKGDFCGVEG---ELASEANKTYVVIRIAG 158


>gi|154491588|ref|ZP_02031214.1| hypothetical protein PARMER_01199 [Parabacteroides merdae ATCC
           43184]
 gi|160890142|ref|ZP_02071145.1| hypothetical protein BACUNI_02582 [Bacteroides uniformis ATCC 8492]
 gi|167764617|ref|ZP_02436738.1| hypothetical protein BACSTE_03007 [Bacteroides stercoris ATCC
           43183]
 gi|294775939|ref|ZP_06741435.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|154088389|gb|EDN87434.1| hypothetical protein PARMER_01199 [Parabacteroides merdae ATCC
           43184]
 gi|156860530|gb|EDO53961.1| hypothetical protein BACUNI_02582 [Bacteroides uniformis ATCC 8492]
 gi|167697286|gb|EDS13865.1| hypothetical protein BACSTE_03007 [Bacteroides stercoris ATCC
           43183]
 gi|294450077|gb|EFG18581.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 11/158 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ ++V      K  E I   L +  ++  +       ER    +K R+       F  
Sbjct: 10  HWFALKV---FYNKVFE-IEDILKKDKIETYIPCEETLMERNGIKKKLRRPVINSLMFFR 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
             + +A+  +                G    P  + D E+   M    +  Q        
Sbjct: 66  STVCRAL--EVQRQFTNKVILYTRQKGLKRLPLAIPDREMNIFMLVTSSGEQGMEYFGED 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           +  F+ GERV V DG F    G++  +  +  R+ V V
Sbjct: 124 NSKFQQGERVRVIDGKFKGAEGVICRI-RKNRRLVVTV 160


>gi|223935506|ref|ZP_03627423.1| hypothetical protein Cflav_PD4995 [bacterium Ellin514]
 gi|223895916|gb|EEF62360.1| hypothetical protein Cflav_PD4995 [bacterium Ellin514]
          Length = 69

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
               V      K RV V +   GR TPVE+  N V
Sbjct: 1   MRASVLEFLPAKQRVRVLLDFLGRPTPVEVDRNSV 35


>gi|313146053|ref|ZP_07808246.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134820|gb|EFR52180.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 186

 Score = 45.0 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +++    E     ++   L+  G+++      IP     +++  R+V       
Sbjct: 12  ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62

Query: 62  PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
              V +++  +  D +  +   T  +   +    +   +           V A       
Sbjct: 63  HNLVFVRSSRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 122

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143
               S +    G RV ++ G F    G  
Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151


>gi|301310600|ref|ZP_07216539.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 20_3]
 gi|300832174|gb|EFK62805.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 20_3]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 15/162 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW++++ Y N EK A + +  +           E  IP    V    G K        P 
Sbjct: 19  RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSKKLVPVIPS 70

Query: 64  YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117
            + + A  +       + +  +   +  +          +      ++ +  +       
Sbjct: 71  LLFVHASHSQITEFKKRYNFLQFAMWEKSTGAEYITVPDDQMDSFIKIASHYEEDTVYYR 130

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVV 158
              +  + G RVC+  G F +  G+   V      RV V + 
Sbjct: 131 PEEIDLKRGMRVCIHGGKFDNVKGMFVRVQGKRNRRVVVLLE 172


>gi|284161993|ref|YP_003400616.1| NusG antitermination factor [Archaeoglobus profundus DSM 5631]
 gi|284011990|gb|ADB57943.1| NusG antitermination factor [Archaeoglobus profundus DSM 5631]
          Length = 148

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 31/154 (20%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +++ V+   N E+     +   + +  L+  V  I  P                 +   G
Sbjct: 3   KFFAVKTTVNQERIVANLMELAVKKYNLE--VYSILAP-----------------KELRG 43

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YVL++A     V   I   P   G L       P  + E      +              
Sbjct: 44  YVLVEAKDIQNVRRAITGIPHARGILSG---EIPFKEVEHFLTPKRAVEQ---------I 91

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           + G +V +  GPF     IV+ VD  K+ + VE+
Sbjct: 92  KEGYKVEIIAGPFKGEQAIVRRVDPSKNEITVEL 125


>gi|91773883|ref|YP_566575.1| transcription antitermination protein NusG [Methanococcoides
           burtonii DSM 6242]
 gi|91712898|gb|ABE52825.1| LSU ribosomal protein L26e [Methanococcoides burtonii DSM 6242]
          Length = 154

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++V+  +N E+     +     +  LD  +  I  P E                   GYV
Sbjct: 8   FVVKTTANQERSVAAMLAQVAKKENLD--IRSIIAPDE-----------------LKGYV 48

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++  +  V   I+  P     +      + +                    +      
Sbjct: 49  LLESSDSGAVEQAIQTVPHARTVVKGQSTIAEIEHFLTPK------------PTVTGIVE 96

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + V+ GPF      VK VDE    + VE+
Sbjct: 97  GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128


>gi|301162527|emb|CBW22073.1| putative transcriptional regulator [Bacteroides fragilis 638R]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +++    E     ++   L+  G+++      IP     +++  R+V       
Sbjct: 38  ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 88

Query: 62  PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
              V +++  +  D +  +   T  +   +    +   +           V A       
Sbjct: 89  HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 148

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143
               S +    G RV ++ G F    G  
Sbjct: 149 YFEPSELNIRKGIRVRITGGLFEGVEGEF 177


>gi|270296427|ref|ZP_06202627.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273831|gb|EFA19693.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    +S+    S   L+    +  +P+  V+S  K R+  SE     
Sbjct: 6   KYWFAARTRDKQEFTVRKSLDRLKSEEHLE---LDYYLPTRFVISQLKYRRKRSEVPVIR 62

Query: 63  GYVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             V +     T      I + P          +   V D ++E  M  ++          
Sbjct: 63  NLVFVHSTKQTACDISNIYNVPLFYMKDLATHSMLVVPDKQMEDFMFVMDLNPDSVSLDS 122

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
               VG +V V  G  +   G V  ++  K+ V + + 
Sbjct: 123 EILTVGHKVKVIKGELSGIEGEV-AIEANKTYVVIRIK 159


>gi|167763480|ref|ZP_02435607.1| hypothetical protein BACSTE_01854 [Bacteroides stercoris ATCC
           43183]
 gi|167698774|gb|EDS15353.1| hypothetical protein BACSTE_01854 [Bacteroides stercoris ATCC
           43183]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 5   WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           W+ ++V YS        ++   L    +++      IP      ++ G++V         
Sbjct: 13  WFAIRVSYSR-----ELALKAILDAENIEN-----FIPMRYEYIMKSGKRVRKLLPAIHN 62

Query: 64  YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
            V + +    +           P           P  + +S++   +       +  +  
Sbjct: 63  LVFVYSTRKRIDTLKDRLESSMPIRFIMNREHCRPVVIPESQMRSFILVAGNCDEAVLYV 122

Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              E     G++V ++ G F    G    +  ++ RV V + 
Sbjct: 123 EPAELHLVKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 163


>gi|325968428|ref|YP_004244620.1| NusG antitermination factor [Vulcanisaeta moutnovskia 768-28]
 gi|323707631|gb|ADY01118.1| NusG antitermination factor [Vulcanisaeta moutnovskia 768-28]
          Length = 148

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 31/157 (19%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ R Y ++   N E      +  R    GLD                +           
Sbjct: 1   MSCRAYALRAVGNQEYNVAFMLKARAEHKGLD----------------KVRISAIVVLPT 44

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             G+V ++  M  ++           G +                 +  ++  V      
Sbjct: 45  LKGFVFVEGSMPYEIQDLATGIKHYRGMVRG---------------VMSIDEIVSSLAKP 89

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           V   VG+ V +   PF  + G V ++D ++ +V++E+
Sbjct: 90  VEINVGDVVEIIVEPFKGYRGKVVDIDRQRGQVYLEL 126


>gi|289580819|ref|YP_003479285.1| NusG antitermination factor [Natrialba magadii ATCC 43099]
 gi|289530372|gb|ADD04723.1| NusG antitermination factor [Natrialba magadii ATCC 43099]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  ++ E+   + I  R         +     P                      YV
Sbjct: 4   FAVKTTASQERTVADMIINREEPE-----IHAALAPDS-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A     +   ++D P     +    + S V                           
Sbjct: 42  MVEAEGNAVLNRVLEDIPHARSIVPGESDISEVEHFLSPK------------PDVEGIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           G+ V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|223992663|ref|XP_002286015.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977330|gb|EED95656.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 738

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 43/192 (22%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV------N 55
            P+WY++   +  E      +        +        +    V   R  R         
Sbjct: 77  EPQWYLINCVAGIE------LDLLAQARLVTKDFPPTDVEKIVVPVERHLRSHGDKKKVV 130

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT------------------------ 91
             +  +PGYV  K  +T+ VY T+++      ++GT                        
Sbjct: 131 DVKVRYPGYVFCKIRLTEDVYETLQELELARSWMGTVNRKGHKKLPPAPLPLPDEEVKKF 190

Query: 92  ---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
               E      D   +    + ++          +EVG+ V V  G F   +G V+ + +
Sbjct: 191 KGLEEKQELFEDMFGDDFSGRTDSGEDLLAQYAGYEVGQMVKVLSGNFEGEDGTVRRLKD 250

Query: 149 EKSRVHVEVVIF 160
            +    + V +F
Sbjct: 251 GQ----ICVRMF 258


>gi|229525603|ref|ZP_04415008.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426]
 gi|229339184|gb|EEO04201.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           D  + + + Q++    +  +    E G+ V V+ G FA    I    D +  R  + V +
Sbjct: 55  DYHLIYQLKQLDCEQLKHATKQLPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKM 113

Query: 160 FGRVTPVELAYNQ 172
             +  P+ +    
Sbjct: 114 ISQQVPMSIENTD 126


>gi|265751851|ref|ZP_06087644.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236643|gb|EEZ22113.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 365

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 31  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 88  LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              V +P        G+R+ +++G F      V  +     R  V V
Sbjct: 148 PVYVPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190


>gi|288931718|ref|YP_003435778.1| NusG antitermination factor [Ferroglobus placidus DSM 10642]
 gi|288893966|gb|ADC65503.1| NusG antitermination factor [Ferroglobus placidus DSM 10642]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 32/157 (20%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ R+++V+  +N E+    ++   +++                    +         + 
Sbjct: 1   MS-RFFVVKTTANQERLVA-NMMSMVAKKN------------------KANVYSILAPKE 40

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             GYV+++A  T+ +  +I+  P V G +    + + +                    ++
Sbjct: 41  LKGYVIVEAESTEDLVKSIRGVPHVKGLVRGEVSFNEIEHFLTPR------------KAA 88

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + G  V +  GPF     +VK VDE ++ + VE+
Sbjct: 89  EQIKEGYTVEIISGPFKGELAVVKRVDEARNEITVEL 125


>gi|154494124|ref|ZP_02033444.1| hypothetical protein PARMER_03469 [Parabacteroides merdae ATCC
           43184]
 gi|154086384|gb|EDN85429.1| hypothetical protein PARMER_03469 [Parabacteroides merdae ATCC
           43184]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 15/162 (9%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RW++++ Y N EK A + +  +           E  IP    V    G K        P 
Sbjct: 19  RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSKKLVPVIPS 70

Query: 64  YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117
            + + A  +       + +  +   +  +          +      ++ +  +       
Sbjct: 71  LLFVHASHSQITEFKKRYNFLQFAMWEKSTGVEYITVPDDQMDSFIKIASHYEEDTVYYR 130

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVV 158
              +  + G RVC+  G F +  G+   V      RV V + 
Sbjct: 131 PEEIDLKRGMRVCIHGGKFDNVKGMFVRVQGKRNRRVVVLLE 172


>gi|255008596|ref|ZP_05280722.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis 3_1_12]
 gi|313146327|ref|ZP_07808520.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135094|gb|EFR52454.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 174

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    +S+    +   L++ +    +  +     ++      E     
Sbjct: 6   KYWFAARTRDKQEFAIRDSLEKLKTELALNYYLPTQFVIRQLKYRRKR-----VEVPVIK 60

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSS 120
             + I+A   D    + K   ++            +   +       V           +
Sbjct: 61  NLIFIQATKQDACDISNKYNIQLFYMKDLLTRAMLIVPDKQMQDFIFVMDLDPNGVSFDN 120

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
               VG RV V  G F    G    +  E ++ +V + I G
Sbjct: 121 DHLSVGSRVQVVKGDFCGVEG---ELASEANKTYVVIRIAG 158


>gi|148642684|ref|YP_001273197.1| transcription antitermination protein NusG [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445819|ref|ZP_03608334.1| hypothetical protein METSMIALI_01463 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349636|ref|ZP_05975053.1| ribosomal protein L24 [Methanobrevibacter smithii DSM 2374]
 gi|148551701|gb|ABQ86829.1| transcription antiterminator, NusG [Methanobrevibacter smithii ATCC
           35061]
 gi|222435384|gb|EEE42549.1| hypothetical protein METSMIALI_01463 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861594|gb|EFC93892.1| ribosomal protein L24 [Methanobrevibacter smithii DSM 2374]
          Length = 156

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGR-LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           Y ++  +  E+     +  + +S  G+   ++ I +P                     GY
Sbjct: 9   YALKTSAGQERNVARLLAHKAISVEGIG--ISAILVPES-----------------LKGY 49

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           +L++   +           KV    G  E    +T  E +  +                +
Sbjct: 50  ILVE---SSTKIDLRNPDLKVPHLRGVVEGKHGITFEEAKRFLKP-------EPIISSIQ 99

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            G  V +  GPF      V  +DE +  V +E++      PV +  +Q+  I
Sbjct: 100 KGSVVELISGPFKGERAKVVRIDESREEVVLELIEAAVPIPVTVKADQIRII 151


>gi|116754720|ref|YP_843838.1| transcription antitermination protein NusG [Methanosaeta
           thermophila PT]
 gi|116666171|gb|ABK15198.1| LSU ribosomal protein L24A [Methanosaeta thermophila PT]
          Length = 153

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y+V+  +N E+     +     +  LD  +  I +P                     GYV
Sbjct: 7   YVVKTTANQERAVANLVAQVARKEKLD--IRAILVPDV-----------------LKGYV 47

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A   + V   I+  P     +    + + +                    + V    
Sbjct: 48  LVEASAPEIVEQAIQGVPHARSVIKGASSFAEIEHFLTPK------------PAVVGISE 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  GPF      VK VD  K  + VE+
Sbjct: 96  GAIVELISGPFKGEMARVKRVDIAKEEITVEL 127


>gi|330997477|ref|ZP_08321327.1| hypothetical protein HMPREF9442_02426 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329570593|gb|EGG52314.1| hypothetical protein HMPREF9442_02426 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK-AVMTDKVYHTIKDTPKVIGFL 89
              L  E+  P    +SV+ GR+   E  F    + +    +         +T +     
Sbjct: 33  FKDLGMEVFTPMVWKLSVKHGRRCREEVPFIQDLLFVNGTRLAVDPIVEKYNTVQYRYLR 92

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQ----RPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
           G  + P  V +S+++  ++ V+++       P       +G +V +  GP   + G ++ 
Sbjct: 93  GGYKIPMTVRESDMQRFIHAVQSSENPRYYTPEEISSDMIGRKVRIVGGPLDGYEGNLQK 152

Query: 146 VDEEK-SRVHVEV-VIFGRVTPVELAYNQ 172
           +      R+ VE+  +      V+  Y Q
Sbjct: 153 IQGAHVKRLFVELPNLLAAAVEVQPEYIQ 181


>gi|212540742|ref|XP_002150526.1| transcription initiation protein spt5 [Penicillium marneffei ATCC
           18224]
 gi|210067825|gb|EEA21917.1| transcription initiation protein spt5 [Penicillium marneffei ATCC
           18224]
          Length = 1021

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+     E+  V +I  R+ +            P      ++         +   GYV I
Sbjct: 213 VRCKPGKERDVVLNIQKRIEQR-----------PPGTRHGLKIISAFER-GKTMTGYVYI 260

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A    +V   +     V            V   E+  ++        R   S     G+
Sbjct: 261 EARRQAEVMEALDGLLDVY----PKTKMVLVPVKEMPDLL--------RVKKSEELNPGD 308

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ V+     V V +
Sbjct: 309 WVRIKRGKYQGDLAQIEEVETNGLEVTVRL 338


>gi|288559740|ref|YP_003423226.1| ribosomal protein L24 family [Methanobrevibacter ruminantium M1]
 gi|288542450|gb|ADC46334.1| ribosomal protein L24 family [Methanobrevibacter ruminantium M1]
          Length = 163

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 21/171 (12%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++  +  E+     +G +  + G+D  +  I +P                     GY+
Sbjct: 9   FALKTSAGQERTVARLLGMKADKPGVD--IKAIVVPES-----------------LKGYI 49

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           ++++     + +       + G +G         D   +  + +V+  ++        + 
Sbjct: 50  IVESATNLDMKNPDMKVRHLRGIVGA--KRDGTIDPSSQITLEEVKKFLKPQPIISSIQK 107

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G  V +  GPF      V  +DE +  V +E++      PV +  +Q+  I
Sbjct: 108 GSIVELVSGPFKGEKSKVVRLDESREEVVLELIEAAVPIPVTVKADQIRII 158


>gi|14520220|ref|NP_125694.1| transcription antitermination protein NusG [Pyrococcus abyssi GE5]
 gi|5457435|emb|CAB48926.1| nusG transcription antitermination protein [Pyrococcus abyssi GE5]
          Length = 152

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+     I  ++    L   +  I  PS+                   GY+
Sbjct: 6   FAVRVTQGQEENTARLIYSKVRTYNLP--IYAILAPSK-----------------VKGYI 46

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            I+A     V   I+         G      P ++ E           ++   +    E 
Sbjct: 47  FIEAPEKSVVDEAIRGIRHAR---GVLPREIPFSEIEH---------FLEEKPAVSGLEP 94

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 95  GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 126


>gi|294643754|ref|ZP_06721552.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292640843|gb|EFF59063.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145
            +  GE+   V   E       +    +    ++S     GE+V V  GP     G + N
Sbjct: 1   MVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVVKGPLTGLVGELVN 60

Query: 146 VDEEKSRVHVEVVIFG 161
           VD  KS++ V + + G
Sbjct: 61  VDG-KSKIAVRLNMLG 75


>gi|260773239|ref|ZP_05882155.1| transcriptional activator RfaH [Vibrio metschnikovii CIP 69.14]
 gi|260612378|gb|EEX37581.1| transcriptional activator RfaH [Vibrio metschnikovii CIP 69.14]
          Length = 137

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 43  ERVVSVRKGRKVNSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDS 101
             V  + +G++   +   FP Y+ +         + T++ T  V+ F+  G  P  ++++
Sbjct: 1   MEVEKILRGKRKKVQEPVFPSYIFVCFDYKQGPTFTTVRSTRGVVDFVRFGPEPKELSEA 60

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
            I  +           +     EVG+ + V  G F     + +  D E +R  + V +  
Sbjct: 61  LITELKKLEYLPDHEQLG--LPEVGQEIEVKGGQFCGIRALYQEPDGE-ARSMMLVQMIN 117

Query: 162 RVTPVELAYNQV 173
           +   + +    +
Sbjct: 118 QPVVISIDNKDL 129


>gi|218130112|ref|ZP_03458916.1| hypothetical protein BACEGG_01699 [Bacteroides eggerthii DSM 20697]
 gi|217987616|gb|EEC53944.1| hypothetical protein BACEGG_01699 [Bacteroides eggerthii DSM 20697]
          Length = 171

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 12/173 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY V V  N E +    +              EI +P + V     G+++   +    G
Sbjct: 9   HWYAVYVRHNTEFRVESWLRE---------QGIEIYLPVQDVYREHAGKRIKVTKPVISG 59

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSVF 122
            + +     +                     P  + D ++      V+ +     + +  
Sbjct: 60  MLFVCLSRPELTIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILMVNEP 119

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
              G  V V+ G      G +    E K  + V +   G    V +  + V +
Sbjct: 120 IAPGTMVTVAKGSMQGIRGEMVKY-ESKYYIAVRLQELGCA-LVSVPVSYVRR 170


>gi|297527348|ref|YP_003669372.1| NusG antitermination factor [Staphylothermus hellenicus DSM 12710]
 gi|297256264|gb|ADI32473.1| NusG antitermination factor [Staphylothermus hellenicus DSM 12710]
          Length = 159

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 32/155 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLS---RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           Y ++     E      I  R+    +   D  V  I +P                     
Sbjct: 10  YALRTTMGREIDVALVIESRIKDLKKQNRDPGVKAIFVP-----------------PGVR 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++      +Y  I +   V         P  V+  E+E +       V+       
Sbjct: 53  GYVFLETSRLASIYRLISEVKYVK-----SGQPIKVSLEEVERL-------VKPKPVIEM 100

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            + G+ V +  GPF      V ++D  K+ V + +
Sbjct: 101 IKEGDIVEIVRGPFRGMKAQVISIDRNKNMVVLSI 135


>gi|224538119|ref|ZP_03678658.1| hypothetical protein BACCELL_03010 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520247|gb|EEF89352.1| hypothetical protein BACCELL_03010 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    +S+    +  GLD    +  +P+  VVS  K R+  +E     
Sbjct: 6   KYWFAARTRDKQEFAVRKSLDKFKAEEGLD---LDYYLPTRTVVSQLKYRRKRTEVPVIR 62

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSS 120
             + I A        +     ++        +   V  ++       +           S
Sbjct: 63  NLIFIYATKQTACDLSNVYGVRLYYMKDLFTHSMLVVPNKQMEDFIFIMDLNPDGVSFDS 122

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
             F +G +V V  G F+   G +      K+ V + + 
Sbjct: 123 EPFAIGNKVKVIKGDFSGIEGEIAT-QANKNYVVIRIK 159


>gi|237712159|ref|ZP_04542640.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229453480|gb|EEO59201.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 17  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 73

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 74  LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 133

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + +P        G+R+ +++G F      V  +     R  V V
Sbjct: 134 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 176


>gi|237726307|ref|ZP_04556788.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434833|gb|EEO44910.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 31  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 88  LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + +P        G+R+ +++G F      V  +     R  V V
Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190


>gi|150006413|ref|YP_001301157.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
 gi|149934837|gb|ABR41535.1| putative transcriptional regulator UpxY-like protein [Bacteroides
           vulgatus ATCC 8482]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 31  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 88  LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + +P        G+R+ +++G F      V  +     R  V V
Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190


>gi|237719412|ref|ZP_04549893.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451272|gb|EEO57063.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 95

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145
            +  GE+   +   E       +    +    ++S     GE+V V  GP     G +  
Sbjct: 1   MVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNSAPLARGEKVRVVKGPLTGLVGELVT 60

Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           VD  +S++ V + + G     ++    VEKI
Sbjct: 61  VDG-RSKIAVRLNMLGCAC-ADMPVGYVEKI 89


>gi|254881672|ref|ZP_05254382.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254834465|gb|EET14774.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 31  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 88  LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + +P        G+R+ +++G F      V  +     R  V V
Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190


>gi|330997594|ref|ZP_08321440.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
 gi|329570305|gb|EGG52040.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
          Length = 247

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 31/167 (18%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+++     E++A + +  R            + +P  R + + KG K   E    P 
Sbjct: 55  RWYVLRATYGREREAEDLLKKR---------GVLVYVPKRRTLKMVKGEKKKVEESLLPN 105

Query: 64  YVLIKAV------------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105
            V +                                            +   +   E+ +
Sbjct: 106 LVFVFTDECTARRLVSFPLKSESRRKDKMPVSLHFMYDHTSLNENGLNDVVVIPHKEMVN 165

Query: 106 IMNQVEAAVQ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
            +       +       +    +  ++V +++G F    G V  +D 
Sbjct: 166 FIRFTIGGSESIRAVSPADFRIKKDQQVVITEGDFKGVVGRVARIDR 212


>gi|294777067|ref|ZP_06742525.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294449125|gb|EFG17667.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 31  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 88  LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + +P        G+R+ +++G F      V  +     R  V V
Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190


>gi|212691398|ref|ZP_03299526.1| hypothetical protein BACDOR_00890 [Bacteroides dorei DSM 17855]
 gi|212666008|gb|EEB26580.1| hypothetical protein BACDOR_00890 [Bacteroides dorei DSM 17855]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%)

Query: 4   RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           RWY++     +             +  R            PS + V    G+ VN++R  
Sbjct: 49  RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 105

Query: 61  FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110
              YV ++A   D      +             K   F    +              N +
Sbjct: 106 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 165

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              + +P        G+R+ +++G F      V  +     R  V V
Sbjct: 166 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 208


>gi|317476604|ref|ZP_07935849.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907200|gb|EFV28909.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 167

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 13/177 (7%)

Query: 1   MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
           M  R WY V V  N E +    +              EI +P + V     G+++   + 
Sbjct: 1   MVHRHWYAVYVRHNTEFRVESWLRE---------QGIEIYLPVQDVYREHAGKRIKVTKP 51

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPV 118
              G + +     +                     P  + D ++      V+ +     +
Sbjct: 52  VISGMLFVCLSRPELTIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILM 111

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            +     G  V V+ G      G +    E K  + V +   G    V +  + V +
Sbjct: 112 VNEPIAPGTMVTVAKGSMQGIRGEMVKY-ESKYYIAVRLQELGCA-LVSVPVSYVRR 166


>gi|303285514|ref|XP_003062047.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456458|gb|EEH53759.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 468

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
            + V +GPF  F G +   +     V   ++IFGR T V LA ++
Sbjct: 421 SIEVQEGPFKGFKGYITG-NNTNGSVEARLLIFGRETSVTLAADE 464


>gi|253563192|ref|ZP_04840649.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946968|gb|EES87250.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 186

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY +++    E     ++ G L+  G+++      IP     +++  R+V       
Sbjct: 12  ALNWYALRITYGREL----ALQGYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62

Query: 62  PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116
              V +++  +  D +  +   T  +   +    +   +           V A       
Sbjct: 63  HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 122

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143
               S +    G RV ++ G F    G  
Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151


>gi|60681050|ref|YP_211194.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|60492484|emb|CAH07254.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
          Length = 199

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY +++    E     ++   L+  G+++      IP     +++  R+V         
Sbjct: 27  NWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAVHN 77

Query: 64  YVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----- 116
            V +++  +  D +  +   T  +   +    +   +           V A         
Sbjct: 78  LVFVRSSRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLLYF 137

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIV 143
             S +    G RV ++ G F    G  
Sbjct: 138 EPSELNIRKGTRVRITGGLFEGVEGEF 164


>gi|163782751|ref|ZP_02177747.1| transcription antitermination protein NusG [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881872|gb|EDP75380.1| transcription antitermination protein NusG [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 198

 Score = 43.9 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 34/175 (19%)

Query: 5   WYIVQVYSNCEKKAVESI------------------------------GGRLSRSGLDHL 34
           WY+++V S  E+   E +                                 +S  G++  
Sbjct: 2   WYVLKVRSGKEEALKELLGRDFEVLYPSRKKLNVYVNGKKRYSFSLSKDKDISVRGVNIR 61

Query: 35  VTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
           + +  + ++      +    + E     GY+ +K    D +    ++   V+GFL  G  
Sbjct: 62  IRDGEVFTDNNHPDVRVVISDGESP-LRGYLFVKGRYEDIL-SKTENLLDVVGFLIMGGK 119

Query: 95  PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
              +TD E+  +  +VE      + ++  E G RV V  G +    G+++ V E+
Sbjct: 120 VRTLTDEEVSDLQKRVEK--GERLKTLLPERGMRVKVVSGEWTGAEGVIEEVYED 172


>gi|124486398|ref|YP_001031014.1| 50S ribosomal protein L24A [Methanocorpusculum labreanum Z]
 gi|124363939|gb|ABN07747.1| LSU ribosomal protein L24A [Methanocorpusculum labreanum Z]
          Length = 158

 Score = 43.9 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 59/152 (38%), Gaps = 28/152 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           YI++  S  E+   ++I   +  +  D +VT + +P +                   GYV
Sbjct: 11  YILKTTSKHERTVADNIREAIENNMTDVVVTAVVVPED-----------------IKGYV 53

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            +++          ++  ++   + +  +   V  +E    + +++  +    +    + 
Sbjct: 54  FVES---------PEEHARIEELVESIAHARIVLKNET--SLEEIKHFLVPKPAVSGIDE 102

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  GPF     +VK VD  K  + VE+
Sbjct: 103 GTIVELIAGPFKGEKAVVKRVDHTKEEITVEL 134


>gi|255081736|ref|XP_002508090.1| predicted protein [Micromonas sp. RCC299]
 gi|226523366|gb|ACO69348.1| predicted protein [Micromonas sp. RCC299]
          Length = 591

 Score = 43.9 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSR--VHVEVVIFGRVTPVELAYNQVE 174
            + V  GPF  F G V + D+ +    V  ++VIFGR T V L   + E
Sbjct: 541 SIEVVAGPFKGFKGYVTSADKPRGDGAVDAKLVIFGRETDVTLEAGEFE 589


>gi|317480379|ref|ZP_07939479.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316903457|gb|EFV25311.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 177

 Score = 43.9 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 8/159 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESI--GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
             W+  +     E    +S+          LD+ +    + S+     ++          
Sbjct: 6   KYWFAARTRDKQEFTVRKSLDRLKSEELLELDYYLPTRFVISQLKYRRKRSEVPVIRNLI 65

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           F          T      I + P       +  +   V D ++E  M  ++         
Sbjct: 66  FVH----STKQTACDISNIYNVPLFYMKDLSTHSMLVVPDKQMEDFMFVMDLNPDGVSLD 121

Query: 121 VFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                VG +V V  G  +   G V  ++  K+ V + + 
Sbjct: 122 SEILTVGHKVKVIKGELSGIEGEV-AIEANKTYVVIRIK 159


>gi|242800831|ref|XP_002483662.1| transcription initiation protein spt5 [Talaromyces stipitatus ATCC
           10500]
 gi|218717007|gb|EED16428.1| transcription initiation protein spt5 [Talaromyces stipitatus ATCC
           10500]
          Length = 1024

 Score = 43.9 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+     E+  V +I  R+ +            P      ++         +   GYV I
Sbjct: 214 VRCKPGKERDVVLNIQKRIEQR-----------PPGTRHGLKIISAFER-GKTMTGYVYI 261

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           ++    +V   +     V            V   E+  ++        R   S     G+
Sbjct: 262 ESRRQAEVMEALDGLLDVY----PKTKMVLVPVKEMPDLL--------RVKKSAELNPGD 309

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ V+     V V +
Sbjct: 310 WVRIKRGKYQGDLAQIEEVETNGLEVTVRL 339


>gi|14589965|ref|NP_142025.1| transcription antitermination protein NusG [Pyrococcus horikoshii
           OT3]
 gi|3256387|dbj|BAA29070.1| 155aa long hypothetical transcription termination-antitermination
           factor [Pyrococcus horikoshii OT3]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+     I  ++    L   +  I  PS+                   GY+
Sbjct: 9   FAVRVTQGQEENTARLIYSKVKTYNLP--IYAILAPSK-----------------VKGYI 49

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            I+A     V   I+      G L       P ++ E           ++   +    E 
Sbjct: 50  FIEAPEKSVVDEAIRGIRHARGVLPG---EIPFSEIEH---------FLEEKPAVSGLEP 97

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 98  GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 129


>gi|126465988|ref|YP_001041097.1| 50S ribosomal protein L24A [Staphylothermus marinus F1]
 gi|126014811|gb|ABN70189.1| LSU ribosomal protein L24A [Staphylothermus marinus F1]
          Length = 159

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           Y ++     E      I  R+    +   D  V  + +P                     
Sbjct: 10  YAIRTTMGREIDVALVIESRIMDLVKQNRDPGVKAVFVP-----------------PGVR 52

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++      +Y  I +   V         P  V+  E+  +       V+       
Sbjct: 53  GYVFLETSRLASIYRLISELKYVK-----SGQPIKVSLDEVGRL-------VKPKPVIEM 100

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            + G+ V +  GPF      V ++D  K+ V + +
Sbjct: 101 IKEGDIVEIVRGPFRGMKAQVISIDRNKNMVVLSI 135


>gi|294646634|ref|ZP_06724264.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292638024|gb|EFF56412.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145
            +  GE+   V   E       +    +    ++      GE+V V  GP +   G +  
Sbjct: 1   MVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVT 60

Query: 146 VDEEKSRVHVEVVIFG 161
           V   KS++ V + + G
Sbjct: 61  V-GGKSKIAVRLNMLG 75


>gi|329963112|ref|ZP_08300892.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328529153|gb|EGF56083.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 15/152 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++ Y+  E K  + +  R     + H +    +        R+G+            
Sbjct: 33  WYALRTYNCQEIKISDFLTDR----QMVHFIPMTYVER----KNREGKVKRVLVPVVHNL 84

Query: 65  VLIKAVMTDKVY-HTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP---- 117
           + ++   + K     + +    I  L      +   + DS++       +   +      
Sbjct: 85  IFLRKDKSQKEILSILGECMTPISVLRKEGSGDCYEIPDSQMVEFRALCDPDFEDKQFIT 144

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
                 + G+ V +  G FA   G +  V+  
Sbjct: 145 HDEADAKPGKEVRIVHGQFAGMTGKLHRVNNN 176


>gi|15789631|ref|NP_279455.1| transcription antitermination protein NusG [Halobacterium sp.
           NRC-1]
 gi|169235344|ref|YP_001688544.1| transcription antitermination protein NusG [Halobacterium salinarum
           R1]
 gi|10579991|gb|AAG18935.1| transcription termination-antitermination factor [Halobacterium sp.
           NRC-1]
 gi|167726410|emb|CAP13193.1| transcription antitermination protein homolog [Halobacterium
           salinarum R1]
          Length = 145

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 34/169 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  ++ E+     I  R      +  +  +  P                      YV
Sbjct: 4   FAVKTTASQEQTVASMIANRE-----EDTIHAVLAPDA-----------------LTSYV 41

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A  T  +  T+ + P     +      S V                           
Sbjct: 42  MVEAEDTAAIERTMDEIPHARSLVPGESGISEVEHFLSPK------------PDVEGIAE 89

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
            + V +  GPF      V+ +DE K +V VE+       PV +  +Q+ 
Sbjct: 90  NDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138


>gi|162448289|ref|YP_001610656.1| hypothetical protein sce0020 [Sorangium cellulosum 'So ce 56']
 gi|161158871|emb|CAN90176.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 473

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
            P      E G RV V  GPF    G+V  +D       V + +    T +EL    +E 
Sbjct: 393 DPAKGGVLEKGSRVRVRRGPFGDKIGVVSELDGRGG-ARVLLGLL--STRLELD--DLEL 447

Query: 176 IV 177
           +V
Sbjct: 448 VV 449


>gi|118575540|ref|YP_875283.1| ribosomal protein L24A [Cenarchaeum symbiosum A]
 gi|118194061|gb|ABK76979.1| ribosomal protein L24A [Cenarchaeum symbiosum A]
          Length = 131

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +E  + +  +    E  + V ++ GPF      +  +D EK    V ++      PV + 
Sbjct: 63  IEGYLVKKSTVTSLEKDQTVEITGGPFKGMKASITRIDHEKEEATVVLLDASYQLPVTVD 122

Query: 170 --YNQV 173
             Y QV
Sbjct: 123 ANYLQV 128


>gi|237708360|ref|ZP_04538841.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457581|gb|EEO63302.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 183

 Score = 43.5 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ ++V      K  E I   L +  ++  +       ER    +K R+       F  
Sbjct: 10  HWFALKV---FYNKVFE-IEDILKKDKIETYIPCEETLMERNGIKKKLRRPVINSLMFFR 65

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119
             + +A+  +                G  + P  + + E++  M    +  Q        
Sbjct: 66  STVCRAL--EVQRQFTNKVILYTRQEGLRKLPLAIPEREMDVFMLVTSSGEQGMEYFGED 123

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           +  F  GERV V DG F    G++  +  + SR+ V V
Sbjct: 124 NPKFYKGERVRVIDGKFKGAEGVICRI-RKNSRLVVTV 160


>gi|255007990|ref|ZP_05280116.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313145706|ref|ZP_07807899.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313134473|gb|EFR51833.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 174

 Score = 43.5 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY+    S  E++  + +  R  R+          +P  ++    +GR   +       
Sbjct: 16  HWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRPKETLLPQITR 66

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122
            +LI+A  +D +         + G +               +    + + +   V  +  
Sbjct: 67  CILIRASESDVL-----QLSGIQGLIIPQNIWEYRIPEWQVNSYQLLFSHIDTAVEWIPD 121

Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQVEKI 176
             E+   V V+ G      G +   + E  R+ +     G  R+T   +    +E++
Sbjct: 122 CPELAPMVRVTGGSLNGLVGELDTSETE-MRIMIRFHAMGCFRIT---IPGEWIERL 174


>gi|295087699|emb|CBK69222.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145
            +  GE+   V   E       +         ++      GE+V V  GP +   G +  
Sbjct: 1   MVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMNDTPLARGEKVRVIKGPLSGLVGELVT 60

Query: 146 VDEEKSRVHVEVVIFG 161
           V   KS++ V + + G
Sbjct: 61  V-GGKSKIAVRLNMLG 75


>gi|319902061|ref|YP_004161789.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
 gi|319417092|gb|ADV44203.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108]
          Length = 177

 Score = 43.5 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 8/159 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E     S+    +   LD    +  +P+  V++  K R+  SE     
Sbjct: 6   KYWFAARTRDKQEFAIRNSLEKLKAEENLD---IDCYLPTRSVITQLKYRRKRSEVPVIR 62

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSS 120
             + + A        +     ++        +   V  ++       V           +
Sbjct: 63  NLIFVHATKQIACDISNVYGVQLFYMKDLFSHSMLVVPNKQMEDFMFVMDLNPNGVSFDN 122

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
               VG +V V  G F    G    V  E ++ +V + I
Sbjct: 123 DSLAVGNKVKVIKGDFCGIEG---EVATEANKTYVIIRI 158


>gi|41615322|ref|NP_963820.1| transcription antitermination protein NusG [Nanoarchaeum equitans
           Kin4-M]
 gi|40069046|gb|AAR39381.1| NEQ540 [Nanoarchaeum equitans Kin4-M]
          Length = 175

 Score = 43.5 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 45/178 (25%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           +IV+     E+   + I  +  + G                                GY+
Sbjct: 18  WIVKTAGGKEEIVADLIEAKAKKLG-------------------ANVYSIVIAPGIKGYI 58

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A   D V   + D   V   L     P  V D E           ++         V
Sbjct: 59  FVEADKYDTVNELVHDIKHVRKVLP---KPIEVKDIEK---------FIKAEPLVTKVNV 106

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT-------PVELAYNQVEKI 176
           G+ V V  GP     G V   +E    V +        T       PV ++ + ++ +
Sbjct: 107 GDIVEVIAGPLKGSRGKVVAFNENTGEVTI-------ETLDSVIPLPVTVSIHDIKLV 157


>gi|254523728|ref|ZP_05135783.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
 gi|219721319|gb|EED39844.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
          Length = 4560

 Score = 43.5 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 2/141 (1%)

Query: 19   VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
             ++I  R +R+  +   ++  +    +            R+ F GYV +     D    +
Sbjct: 886  AKTITRRGARNTKEEGFSKPEVVEREIKRRGLDPADYEVRKHFGGYVGVLKDAPDIAIKS 945

Query: 79   IKDTP-KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137
               T                   +EI   ++Q  A     ++      G+ V    G   
Sbjct: 946  QTPTAGNEGRGAQPTSKGDGAARTEIHRKIDQEFAENLEAIAEEGIGAGDTVKFRSGD-E 1004

Query: 138  SFNGIVKNVDEEKSRVHVEVV 158
            +    V  +D E+  + V + 
Sbjct: 1005 TLAAEVMEIDNEQGTLQVRLE 1025


>gi|237711903|ref|ZP_04542384.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|317474958|ref|ZP_07934227.1| glycogen synthase [Bacteroides eggerthii 1_2_48FAA]
 gi|229454598|gb|EEO60319.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|316908861|gb|EFV30546.1| glycogen synthase [Bacteroides eggerthii 1_2_48FAA]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++           +     +   L +   E+  P +  +SV  G++   E  F    
Sbjct: 12  WYVMR-------DLKRANAKLPAYKQLLNEHFEVFTPMKEQLSVHGGKRTREEVPFIQDL 64

Query: 65  VLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPV 118
           + +       D                G  +NP  V D+++E  ++ V          P 
Sbjct: 65  LFVHDTQEAIDPFVEKYPTIQYRFQKGGGYKNPMTVADADMERFIHAVSVSKNPKYYLPG 124

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV-VIFGRVTPVELAYNQVE 174
                  G  + +  GP   + G +  V   K  R+ VE+   F     VE+    + 
Sbjct: 125 ELTPSMCGRHIRIVGGPLDGYEGKLLTVRGSKTKRLLVELPEFF--SVGVEVNPEYIR 180


>gi|145348039|ref|XP_001418465.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578694|gb|ABO96758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 262

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172
           +RV V  GPF  F G +   +++   V   + IFGR T V LA ++
Sbjct: 214 DRVEVHTGPFKGFKGHIVARNDD-GSVEATLAIFGRDTNVSLAADE 258


>gi|73668161|ref|YP_304176.1| transcription antitermination protein NusG [Methanosarcina barkeri
           str. Fusaro]
 gi|72395323|gb|AAZ69596.1| LSU ribosomal protein L24A [Methanosarcina barkeri str. Fusaro]
          Length = 152

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++++  +N E+    ++     +  LD  +  I  P E                   GYV
Sbjct: 8   FVIKTTANQERSVATALARVSKKEKLD--IRAILAPDE-----------------LKGYV 48

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A  +  V   I+  P     +    + + +                    +    + 
Sbjct: 49  LVEAPKSGIVELAIQTIPHARALVKGSSSIAEIEHFLKPK------------PTVTGIKE 96

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + V+ GPF      VK VDE    + VE+
Sbjct: 97  GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128


>gi|294494867|ref|YP_003541360.1| 50S ribosomal protein L24A [Methanohalophilus mahii DSM 5219]
 gi|292665866|gb|ADE35715.1| LSU ribosomal protein L24A [Methanohalophilus mahii DSM 5219]
          Length = 152

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++++  +N E+     +     +  LD  +  +  P E                   GYV
Sbjct: 8   FVIKTTANQERSVAGMLAKVAKKENLD--IRALLAPDE-----------------LKGYV 48

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L ++    +V   I+  P     +    +   +                    +      
Sbjct: 49  LAESSNPGEVEQAIQTVPHARALVKGQSSMEEIMHFLTPK------------PTVTGITE 96

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + V+ GPF      VK VDE    + VE+
Sbjct: 97  GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128


>gi|240102542|ref|YP_002958851.1| transcription antitermination protein NusG [Thermococcus
           gammatolerans EJ3]
 gi|239910096|gb|ACS32987.1| Ribosomal protein L26E (rpl26E) [Thermococcus gammatolerans EJ3]
          Length = 152

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+   + I  ++    L   V  I  PS+                   GY+
Sbjct: 7   FTVRVTVGQEETTAKLIYSKVKTYNLP--VYAILAPSK-----------------VKGYI 47

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   IK      G L                    +E  ++   +   FE 
Sbjct: 48  FVEAPSKSAVDEAIKGIRHARGTLPGEVKFEE------------IEHFLEEKPAVSGFEP 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 96  GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 127


>gi|320101303|ref|YP_004176895.1| 50S ribosomal protein L24A [Desulfurococcus mucosus DSM 2162]
 gi|319753655|gb|ADV65413.1| LSU ribosomal protein L24A [Desulfurococcus mucosus DSM 2162]
          Length = 163

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 32/174 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           Y V+     E      I  R+      G +  V  I IP                     
Sbjct: 15  YAVKTTVGRELDVAFIISMRVEEKKAKGEETSVRSIIIP-----------------PDIK 57

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV ++     ++Y  + D   V         P  +   E+E ++       +       
Sbjct: 58  GYVFLEVEKLSELYRVVSDIRYVK-----AGRPMKIAYEELEKLLKPKPVIEE------- 105

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +VG+ V ++ GPF      +  VD  K+ + V ++      P+ +  + V+K+
Sbjct: 106 LDVGDIVEITRGPFKGMRAKITGVDRNKNMLTVNILEATFTIPITIPGDYVKKM 159


>gi|307594170|ref|YP_003900487.1| NusG antitermination factor [Vulcanisaeta distributa DSM 14429]
 gi|307549371|gb|ADN49436.1| NusG antitermination factor [Vulcanisaeta distributa DSM 14429]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 31/157 (19%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+ R Y ++   N E      +  R    GLD                +           
Sbjct: 8   MSCRVYALRAVGNQEYNVAFMLKARTEHKGLD----------------KVKVTAIVVLPA 51

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
             G+V ++  +  ++           G +                 +  V+  V      
Sbjct: 52  LKGFVFVEGSLPYEIQDLATGIKHYRGMVRG---------------VMSVDEIVSSLAKP 96

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           V   VG+ V +   PF  + G V ++D ++ +V++E+
Sbjct: 97  VEINVGDVVEIIVEPFKGYRGKVVDIDRQRGQVYLEL 133


>gi|294644643|ref|ZP_06722394.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292640015|gb|EFF58282.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 99

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145
            +  GE+   V   E       +    +    ++      GE+V V  GP +   G +  
Sbjct: 1   MVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVT 60

Query: 146 VDEEKSRVHVEVVIFG 161
           V   KS++ V + + G
Sbjct: 61  V-GGKSKIAVRLNMLG 75


>gi|257076134|ref|ZP_05570495.1| transcription antitermination protein NusG [Ferroplasma acidarmanus
           fer1]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 20/151 (13%)

Query: 7   IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66
           I +     E      +     R   +              + R             GY  
Sbjct: 146 IAKCTIGKELDIAIDLSNHAERDREER--------MAMNKNARNEVMAVMSPYEIKGYFF 197

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
           I+ +  D+V    K      GF+    + S +                    +    E+G
Sbjct: 198 IETMHADRVDVLSKSIRGFRGFVSGDIDISEIEKYLTPK------------PAVTGLEMG 245

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
             V + +GPF      +  +D  K  V V++
Sbjct: 246 SLVEIVEGPFKGERAKITAIDAAKEEVTVQL 276


>gi|212694234|ref|ZP_03302362.1| hypothetical protein BACDOR_03760 [Bacteroides dorei DSM 17855]
 gi|212663221|gb|EEB23795.1| hypothetical protein BACDOR_03760 [Bacteroides dorei DSM 17855]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++VY N E  A + +         +    E  IP ++V+   KG+KV          
Sbjct: 12  WYVMRVYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 63

Query: 65  VLIKAVM---TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115
           V + A      D  ++   D   V    G       V D ++ + +   + A +      
Sbjct: 64  VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 123

Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                +    +  E G+RV V  GPF    G    V +++ R  V +
Sbjct: 124 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 170


>gi|329965206|ref|ZP_08302137.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328523569|gb|EGF50666.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++ Y N E  A + +         +    E  IP ++V+   KG+KV          
Sbjct: 28  WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 79

Query: 65  VLIKAVM---TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115
           V + A      D  ++   D   V    G       V D ++ + +   + A +      
Sbjct: 80  VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 139

Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                +    +  E G+RV V  GPF    G    V +++ R  V +
Sbjct: 140 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 186


>gi|262384300|ref|ZP_06077435.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294003|gb|EEY81936.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 179

 Score = 43.1 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 5/147 (3%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78
                 + +R  LD    E  IP        +G+K           + + A+ +      
Sbjct: 3   ATYRRSKNARELLDKEKIECFIPMRYETREIRGKKKRELTPVVQNLMFVHAIPSVIQEVK 62

Query: 79  IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDG 134
            +                 V + ++   +       ++        V    G RV ++ G
Sbjct: 63  SRVKYLQYIVNVRSGEKIIVPEDQMRRFIAVTGTYDEQLLWFKPEEVNLAKGTRVRITGG 122

Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFG 161
            F    G+   V   + R  V V I G
Sbjct: 123 VFEGEEGVFVKVRGARER-RVVVEIQG 148


>gi|254171978|ref|ZP_04878654.1| ribosomal protein L24 [Thermococcus sp. AM4]
 gi|214033874|gb|EEB74700.1| ribosomal protein L24 [Thermococcus sp. AM4]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+   + I  ++    L   V  I  PS+                   GY+
Sbjct: 7   FTVRVTVGQEETTAKLIYSKVKTYNLP--VYAILAPSK-----------------VKGYI 47

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   IK      G L                    +E  ++   +   FE 
Sbjct: 48  FVEAPSKSAVDEAIKGIRHARGTLPGEVRFEE------------IEHFLEEKPAVSGFEP 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 96  GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 127


>gi|20093062|ref|NP_619137.1| transcription antitermination protein NusG [Methanosarcina
           acetivorans C2A]
 gi|19918386|gb|AAM07617.1| transcription antitermination protein NusG [Methanosarcina
           acetivorans C2A]
          Length = 156

 Score = 42.7 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++++  +N E+    ++     +  LD  +  I  P E                   GYV
Sbjct: 12  FVIKTTANQERSVAMALARIAKKEKLD--IRAILAPDE-----------------LKGYV 52

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A  +  V   I+  P     +    + + +                         + 
Sbjct: 53  LVEAPKSGIVELAIQTIPHARALVKGSSSIAEIEHFLKPK------------PIVTGIKE 100

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + V+ GPF      VK VDE    + VE+
Sbjct: 101 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 132


>gi|48477517|ref|YP_023223.1| transcription antitermination protein NusG [Picrophilus torridus
           DSM 9790]
 gi|48430165|gb|AAT43030.1| hypothetical transcription antitermination protein NusG
           [Picrophilus torridus DSM 9790]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 1/126 (0%)

Query: 52  RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
           ++     +     +L      +   +   +T  V                    +     
Sbjct: 157 KERLISNKNARNEILSIMSPYEIKGYIFIETMHVDRVEYLARTLRNFKGIISGTVSMDEI 216

Query: 112 AAVQRPVSSVFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170
                P  +V    +G+ V +  GPF      + ++D  K  V V++       PV +  
Sbjct: 217 EHYLTPKPAVSGLSLGDLVEIVGGPFKGERAKIMSIDASKEEVTVQLTESMVPIPVTVKA 276

Query: 171 NQVEKI 176
             +  +
Sbjct: 277 ESIRPL 282


>gi|317480623|ref|ZP_07939711.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316903249|gb|EFV25115.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 190

 Score = 42.7 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY+++ Y N E  A + +         +    E  IP ++V+   KG+KV          
Sbjct: 12  WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 63

Query: 65  VLIKAVM---TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115
           V + A      D  ++   D   V    G       V D ++ + +   + A +      
Sbjct: 64  VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 123

Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                +    +  E G+RV V  GPF    G    V +++ R  V +
Sbjct: 124 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 170


>gi|332158453|ref|YP_004423732.1| transcription antitermination protein NusG [Pyrococcus sp. NA2]
 gi|331033916|gb|AEC51728.1| transcription antitermination protein NusG [Pyrococcus sp. NA2]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+     I  ++    L   V  I  PS+                   GY+
Sbjct: 6   FAVRVTQGQEENTARLIYSKVRTYNLP--VYAILAPSK-----------------VKGYI 46

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   I+         G      P ++ E           ++   +    E 
Sbjct: 47  FVEAPEKSVVDEAIRGIRHAR---GVLPREVPFSEIEH---------FLEEKPAVSGLEP 94

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 95  GDIVELISGPFKGEKAKVVRVDEAKDEIVVEL 126


>gi|153930622|ref|YP_001393253.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758]
 gi|152958166|gb|ABS45629.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 16/133 (12%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SERRF 60
             WY++        +          + GLD L      PS +V  VR             
Sbjct: 2   KNWYLLSYKYGQVNRV---------QFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPM 52

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           FP Y+ ++  +      TI  T  V  F+  G  P P+  S I  +MN+ E + QR    
Sbjct: 53  FPTYLFVEFDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLMNRSECSSQR---- 108

Query: 121 VFFEVGERVCVSD 133
              E+ E   + D
Sbjct: 109 -NEEIDEIATIPD 120


>gi|317479098|ref|ZP_07938239.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
 gi|316904754|gb|EFV26567.1| transcription termination factor nusG [Bacteroides sp. 4_1_36]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY V+V  + E    + +              E  IP      VRK R++       
Sbjct: 6   EMHWYAVRVTYSRELFFKDYLDAE---------GIENYIPMRYEYVVRKERRLRKLVPAV 56

Query: 62  PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V +++    M +       + P           P  + DS++   +       Q   
Sbjct: 57  HNLVFVRSTRERMDEIKNKPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQAVL 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNG 141
               + +    G RV ++ G F    G
Sbjct: 117 YLEPTELNLSQGTRVRITGGIFEGVEG 143


>gi|53712721|ref|YP_098713.1| putative transcriptional regulatory protein UpxY-like protein
           [Bacteroides fragilis YCH46]
 gi|60680881|ref|YP_211025.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis NCTC 9343]
 gi|253563291|ref|ZP_04840748.1| UpaY [Bacteroides sp. 3_2_5]
 gi|265762815|ref|ZP_06091383.1| UpaY [Bacteroides sp. 2_1_16]
 gi|14578623|gb|AAK68912.1|AF189282_2 UpaY [Bacteroides fragilis]
 gi|52215586|dbj|BAD48179.1| putative transcriptional regulatory protein UpxY homolog
           [Bacteroides fragilis YCH46]
 gi|60492315|emb|CAH07080.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis NCTC 9343]
 gi|251947067|gb|EES87349.1| UpaY [Bacteroides sp. 3_2_5]
 gi|263255423|gb|EEZ26769.1| UpaY [Bacteroides sp. 2_1_16]
          Length = 172

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M+ +   W+  +   + E     ++           L  E  +P++ V+   K R+   E
Sbjct: 1   MSEQQEYWFAARTKKDQEFSVRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQ 115
                  + ++         T  D   +        +   +  ++       V       
Sbjct: 52  VPVIKNLIFVRTTKDRAWSITKDDHVPLYYMKDLYTHTLLIVPNKQMEDFKFVMDLAPEN 111

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                +   VG +V V  G F    G + ++    +R +V + I G
Sbjct: 112 VTFDDLPLTVGTKVQVVKGEFCGIEGELSSL---ANRTYVVIRIHG 154


>gi|160890364|ref|ZP_02071367.1| hypothetical protein BACUNI_02805 [Bacteroides uniformis ATCC 8492]
 gi|156860096|gb|EDO53527.1| hypothetical protein BACUNI_02805 [Bacteroides uniformis ATCC 8492]
          Length = 183

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY V+V  + E    E +      +G+++ +     P      VRK R++       
Sbjct: 6   EMHWYAVRVTYSRELFFKEYLDA----AGIENYI-----PMRYEYVVRKERRLRKLVPAV 56

Query: 62  PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V +++    M +       + P           P  + DS++   +       Q   
Sbjct: 57  HNLVFVRSTRERMDEIKNEPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQAVL 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNG 141
               + +    G RV ++ G F    G
Sbjct: 117 YLEPTELNLSQGTRVRITGGIFEGVEG 143


>gi|327401544|ref|YP_004342383.1| NusG antitermination factor [Archaeoglobus veneficus SNP6]
 gi|327317052|gb|AEA47668.1| NusG antitermination factor [Archaeoglobus veneficus SNP6]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 31/154 (20%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           R++ ++  +N E+     +   + +  L   V  I  P                 +   G
Sbjct: 3   RFFAIKTTANQERVVANLMEMAVKKYELG--VYSILAP-----------------KELKG 43

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           YV+++A   + +   I+  P V G +    N S +                    ++   
Sbjct: 44  YVIVEAEKMEDLLKAIRGLPHVKGVVKGEVNFSEIEHFLTPR------------KAAEQI 91

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           + G  V +  GPF     +VK VDE K+ + VE+
Sbjct: 92  KEGFTVEIISGPFKGELAVVKRVDEAKNEITVEL 125


>gi|270296925|ref|ZP_06203124.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272912|gb|EFA18775.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
              WY V+V  + E    E +      +G+++ +     P      VRK R++       
Sbjct: 6   EMHWYAVRVTYSRELFFKEYLDA----AGIENYI-----PMRYEYVVRKERRLRKLVPAV 56

Query: 62  PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
              V +++    M +       + P           P  + DS++   +       Q   
Sbjct: 57  HNLVFVRSTRERMDEIKNEPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQAVL 116

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNG 141
               + +    G RV ++ G F    G
Sbjct: 117 YLEPTELNLSQGTRVRITGGIFEGVEG 143


>gi|212223324|ref|YP_002306560.1| transcription antitermination protein NusG [Thermococcus onnurineus
           NA1]
 gi|212008281|gb|ACJ15663.1| transcription antitermination protein [Thermococcus onnurineus NA1]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+   + I  ++    L   V  I  PS+                   GY+
Sbjct: 7   FTVRVTVGQEETTAKLIYSKIKTYNLP--VYAILAPSK-----------------VKGYI 47

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   IK      G L                    +E  ++   +   FE 
Sbjct: 48  FVEAPSKSAVDEAIKGIRHAKGTLPGEVRFEE------------IEHFLEEKPAVSGFEP 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 96  GDIVELIAGPFKGEKAKVVRVDEAKDEIVVEL 127


>gi|301162427|emb|CBW21972.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis 638R]
          Length = 172

 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M+ +   W+  +   + E     ++           L  E  +P++ V+   K R+   E
Sbjct: 1   MSEQQEYWFAARTKKDQEFSVRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQ 115
                  + ++         T  D   +        +   +  ++       V       
Sbjct: 52  VPVIKNLIFVRTTKDRAWSITKDDHVPLYYMKDLYTHTLLIVPNKQMEDFKFVMDLAPEN 111

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                +   +G +V V  G F    G + ++    +R +V + I G
Sbjct: 112 VTFDDLPLTIGTKVQVVKGEFCGIEGELSSL---ANRTYVVIRIHG 154


>gi|315229956|ref|YP_004070392.1| NusG-like transcription antitermination protein [Thermococcus
           barophilus MP]
 gi|315182984|gb|ADT83169.1| NusG-like transcription antitermination protein [Thermococcus
           barophilus MP]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+V    E+     +  +     L   +  I  PS+                   GY+
Sbjct: 7   FAVRVTVGQEETTARLVYSKAKTYNLP--IYAILTPSK-----------------VKGYI 47

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            I+A     V   I+         GT       ++ E           ++   +   FE 
Sbjct: 48  FIEAPSKSAVDEAIRGIRHAR---GTLPGEVAFSEIEH---------FLEEKPAVSGFEP 95

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G+ V +  GPF      V  VDE K  + VE+
Sbjct: 96  GDIVELIAGPFKGEKAKVIRVDEAKDEIVVEL 127


>gi|57641354|ref|YP_183832.1| transcription antitermination protein NusG [Thermococcus
           kodakarensis KOD1]
 gi|57159678|dbj|BAD85608.1| transcription antitermination protein [Thermococcus kodakarensis
           KOD1]
          Length = 152

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           +E  ++   +   FE G+ V +  GPF      V  VDE K  + VE+
Sbjct: 80  IEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 127


>gi|21227112|ref|NP_633034.1| transcription antitermination protein NusG [Methanosarcina mazei
           Go1]
 gi|20905441|gb|AAM30706.1| putative transcription antitermination protein nusG [Methanosarcina
           mazei Go1]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++++  +N E+    ++     +  LD  +  I  P E                   GYV
Sbjct: 12  FVIKTTANQERSVAMTLARVAKKEKLD--IRAILAPDE-----------------LKGYV 52

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A  +  V   I+  P     +    + S +                         + 
Sbjct: 53  LVEAPKSGIVELAIQTIPHARALVKGSSSISEIEHFLKPK------------PVVTGIKE 100

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + V+ GPF      VK VDE    + VE+
Sbjct: 101 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 132


>gi|126178361|ref|YP_001046326.1| ribosomal protein L24 [Methanoculleus marisnigri JR1]
 gi|125861155|gb|ABN56344.1| LSU ribosomal protein L24A [Methanoculleus marisnigri JR1]
          Length = 157

 Score = 42.0 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 29/152 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++  +  E+   ++I   +SR   D  V  + +P E                   GYV
Sbjct: 9   YAIKTTAKQERTVADNIEK-VSREQKDIHVMAVMVPEE-----------------LKGYV 50

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++  +      + +       +  G              +++VE  +           
Sbjct: 51  LVESPDSIARIEQLVELIPHARAVVQGSTA-----------LSEVEHFLVPKPVVSGITE 99

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  GPF     +VK +D  K  + VE+
Sbjct: 100 GTIVEIIAGPFKGEKAVVKRIDTGKEEITVEL 131


>gi|121707137|ref|XP_001271743.1| transcription initiation protein spt5 [Aspergillus clavatus NRRL 1]
 gi|119399891|gb|EAW10317.1| transcription initiation protein spt5 [Aspergillus clavatus NRRL 1]
          Length = 1045

 Score = 42.0 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  +  E++ V SI  R+              P      ++             GY+ +
Sbjct: 237 VRCKAGKEREVVFSIQKRIEER-----------PPGSRKPMKIISAFERGG-AMSGYIYV 284

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 285 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 332

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ VD     V V +
Sbjct: 333 WVRIKRGKYQGDLAQIEEVDTNGLEVTVRL 362


>gi|220915023|ref|YP_002490331.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219952774|gb|ACL63164.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 118

 Score = 42.0 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 56  SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
             R  FPGY  +     ++ +  I   P V   + TGE P+ +    +  ++   +    
Sbjct: 1   MRRPVFPGYAFVGKRP-EQSWRDILRVPGVRALVTTGEAPTELPPW-MMKMLIAADEMAA 58

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
                    VG++V + D  +    G V     E  R+ V +  FG+   + +  +++
Sbjct: 59  YDRPRPQLAVGDKVQIRDELWEGLIGEVMRA-PEGRRIAVLLKAFGKKHVLSVDVDRL 115


>gi|88601955|ref|YP_502133.1| NusG antitermination factor [Methanospirillum hungatei JF-1]
 gi|88187417|gb|ABD40414.1| LSU ribosomal protein L24A [Methanospirillum hungatei JF-1]
          Length = 160

 Score = 42.0 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 28/152 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+  +  E+   ++I   +  +  D  V  + +P E                   GYV
Sbjct: 11  FAVKTTNRAERSVADNIDKAVRDADNDIRVMSVIVPDE-----------------LKGYV 53

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++          + +       +  G              + +V   +    +    + 
Sbjct: 54  LVETDEPIARVQELMEHVPSARTVLPG-----------VTTLEEVGHYLIPKPAVSGIDE 102

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V + +GPF     +VK VD  K  + VE+
Sbjct: 103 GTIVELINGPFKGEKAVVKRVDASKEEITVEL 134


>gi|262165225|ref|ZP_06032962.1| transcriptional activator RfaH [Vibrio mimicus VM223]
 gi|262024941|gb|EEY43609.1| transcriptional activator RfaH [Vibrio mimicus VM223]
          Length = 69

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           M Q++    +  +    E G+ V V+ G FA    I +  D +  R  + V +  +  P+
Sbjct: 1   MKQLDCEQLKGSARQLPEKGQTVRVARGQFAGIEAIYQEPDGDT-RSIMLVKMISQQVPM 59

Query: 167 ELAYNQ 172
            +    
Sbjct: 60  SIENTD 65


>gi|301115069|ref|XP_002999304.1| transcription elongation factor SPT5, putative [Phytophthora
           infestans T30-4]
 gi|262111398|gb|EEY69450.1| transcription elongation factor SPT5, putative [Phytophthora
           infestans T30-4]
          Length = 1142

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 86  IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
              L        ++D E++  +                 VGE V V +GPF+  +G VK+
Sbjct: 549 FTVLCQNGQSRNISDQEVQRKIVSSRTTAALDKKHNHVSVGEMVNVVEGPFSGHSGTVKH 608

Query: 146 VDE-----EKSRVH 154
           +         +RV 
Sbjct: 609 IYRTYLFIHNNRVT 622



 Score = 40.8 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116
           +  +  Y+ I                + +   G+      +++S +  +   +    QR 
Sbjct: 607 KHIYRTYLFIHNNRVTTNSGMFVTRARGVILSGSKARSDMISNSTVPRMDAGMRQQNQRG 666

Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                    +G+ V V  G +  + GIV  VDE   +V VE+ 
Sbjct: 667 GRNQRESELIGQTVKVKKGRWKGYIGIV--VDESDQKVKVEIH 707



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKS--RVHVEVVIFGRVTPVEL 168
            + +VG+ + V  G ++   G V  VD+ +      V V    R   V +
Sbjct: 457 KYVKVGDHIKVVSGMYSGETGTVVAVDDSEGAPVAIVLVDSMAREIQVRV 506



 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 11/153 (7%)

Query: 32  DHLVTEITIPSERVVSVRKG---RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIG- 87
             L     +P   V   R       +++    F     +   +      T +D    +  
Sbjct: 311 QKLFHANMVPGADVARRRYPSTGEMMDTFDNDFYQEGFLIKEVNIATMLTTEDVNPSLDE 370

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
                       +   E ++  VEA   +  + V    G+ V V +G   +  G+V + +
Sbjct: 371 INRFSSVAGEDGEHTAEEMLASVEADDWK--NKVDLTKGDTVRVIEGDLINLMGVVLSTN 428

Query: 148 EEKSRVHVEV---VIFGRVTPVELAYNQVEKIV 177
                V V      I  + T ++    Q+ K V
Sbjct: 429 TANDTVRVMPLHEEI--KDTILDFQLKQLMKYV 459


>gi|189465956|ref|ZP_03014741.1| hypothetical protein BACINT_02319 [Bacteroides intestinalis DSM
           17393]
 gi|189434220|gb|EDV03205.1| hypothetical protein BACINT_02319 [Bacteroides intestinalis DSM
           17393]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 8/159 (5%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    + +    S   LD    +  +P++ V+S  K R+  S      
Sbjct: 6   KYWFAARTRDKQEFAIGKFLEKLKSNENLD---IDYYLPTKIVISQLKHRRKRSVVPVIR 62

Query: 63  GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             + + A   T      +              +   V D +++  M  ++          
Sbjct: 63  NLIFVCATKQTACDISNVYGVQLFYMKDLFTHSMLVVPDKQMKDFMFVMDLNPDGVSFDN 122

Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
               +G +V V  G F    G    +  E ++ +V + I
Sbjct: 123 EPLTIGNKVKVVKGDFRGIEG---EIATEANKTYVVIRI 158


>gi|296242675|ref|YP_003650162.1| 50S ribosomal protein L24A [Thermosphaera aggregans DSM 11486]
 gi|296095259|gb|ADG91210.1| LSU ribosomal protein L24A [Thermosphaera aggregans DSM 11486]
          Length = 162

 Score = 41.6 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 32/155 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           + V+     E      I  R       G D  ++ I IP                     
Sbjct: 14  FAVRTTMGRELDVALVIARRAEELIAKGEDPGISSIVIP-----------------PNVR 56

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           GYV  +      +Y    +   V         P  V+  E+E ++               
Sbjct: 57  GYVFFEVEKLASLYRLASEVKYVK-----ASRPVKVSPEELEKLIMP-------KPVVES 104

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
             VG+ V +  GPF      V  +D  K+ + V +
Sbjct: 105 ISVGDVVEIIRGPFRGMKAQVTGIDRNKNMLTVNI 139


>gi|119500830|ref|XP_001267172.1| transcription initiation protein spt5 [Neosartorya fischeri NRRL
           181]
 gi|119415337|gb|EAW25275.1| transcription initiation protein spt5 [Neosartorya fischeri NRRL
           181]
          Length = 1050

 Score = 41.6 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  +  E++ V +I  R+              P      ++             GY+ +
Sbjct: 238 VRCKAGKEREVVFAIQKRIEER-----------PPGSRKPIKIISAFERGG-AMSGYIYV 285

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 286 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 333

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ VD     V V +
Sbjct: 334 WVRIKRGKYQGDLAQIEEVDTNGLEVTVRL 363


>gi|260885491|ref|ZP_05735129.2| putative transcriptional regulatory protein [Prevotella tannerae
           ATCC 51259]
 gi|260852484|gb|EEX72353.1| putative transcriptional regulatory protein [Prevotella tannerae
           ATCC 51259]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/140 (7%), Positives = 37/140 (26%), Gaps = 6/140 (4%)

Query: 23  GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
              +++           +           +     R    G + I+  +     +  +  
Sbjct: 48  LKHIAQKLKADNCFPTFVHQSCKYIRNHDKVCKQLRPTISGLIFIQGEVKAVEAYFKERL 107

Query: 83  PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----SSVFFEVG-ERVCVSDGPFA 137
           P++                 +     ++       +           G + V ++ GP  
Sbjct: 108 PELHLACDYATRCVARIPHAVMQPFMKIAELDATRIRFLLHPFEHYAGSQLVRITSGPMT 167

Query: 138 SFNGIVKNVDEEKSRVHVEV 157
              G +  +D ++ ++ + V
Sbjct: 168 GLEGYIIRIDRDR-KLVLRV 186


>gi|255513719|gb|EET89984.1| NusG antitermination factor [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 150

 Score = 41.6 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++V+V S  E  A   +  +LS+   D  +  I +                      GY+
Sbjct: 3   FVVKVTSGQENIAANILQSKLSKG--DAPIYSIIVIEG-----------------LRGYI 43

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           +++A              K     G    P    D E           +    ++     
Sbjct: 44  IVEAQ---DELACRNFITKERSIKGIIPKPMDPADVEKL---------IATKSTAQDISR 91

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            + V  + GPF  +   V  VDE KS + VE+
Sbjct: 92  NDIVEFTSGPFKGYKAKVLKVDELKSDITVEL 123


>gi|242398372|ref|YP_002993796.1| NusG transcription antitermination protein [Thermococcus sibiricus
           MM 739]
 gi|242264765|gb|ACS89447.1| NusG transcription antitermination protein [Thermococcus sibiricus
           MM 739]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           +E  ++   +   FE G+ V +  GPF      V  VDE K  + VE+
Sbjct: 83  IEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 130


>gi|254476170|ref|ZP_05089556.1| hypothetical protein RR11_2008 [Ruegeria sp. R11]
 gi|214030413|gb|EEB71248.1| hypothetical protein RR11_2008 [Ruegeria sp. R11]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 34/200 (17%)

Query: 2   TPRWYIVQVYSN-------------CE-----------KKAVESIGG-RLSRSGLDHLVT 36
              WY V++ +               E           +K   S     +    L     
Sbjct: 11  EMDWYAVKLKARQNGGRRETLLGVEYETYKAGNGRMARRKVKGSGQRVFVPELVLQKAGF 70

Query: 37  EITIP---SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
           E+ +P     + +S  +  K    R    G++ +        +H +     V G +G G 
Sbjct: 71  EVFLPVKREWQRISRFRPEKELRSRPAMEGWLFVGWPAGQARFHELMALDVVAGVMGAGG 130

Query: 94  NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV----GERVCVSDGPFASFNGIVKNVDEE 149
            P  ++D+++  +M +      R  SS   +     G+ V V  GP          +D  
Sbjct: 131 RPVRISDAKVRFLMRKFGGGRLRRRSSDVDQPRFAAGDLVRVEAGPLEGQQ--FALLDVT 188

Query: 150 KSRVHVEVVIFGRVTPVELA 169
                  + + G+   VEL 
Sbjct: 189 GGSARAVMTLLGKDVEVELE 208


>gi|148701963|gb|EDL33910.1| mCG145772 [Mus musculus]
          Length = 395

 Score = 41.2 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  R+  V
Sbjct: 233 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 284


>gi|297709947|ref|XP_002831674.1| PREDICTED: LOW QUALITY PROTEIN: G patch domain and KOW
           motifs-containing protein-like [Pongo abelii]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +         G  V V  GP     G V+ +D +  R  V + +  RV  V
Sbjct: 229 QDKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGNRVVTV 283


>gi|288560120|ref|YP_003423606.1| ribosomal protein L24P Rpl24p [Methanobrevibacter ruminantium M1]
 gi|288542830|gb|ADC46714.1| ribosomal protein L24P Rpl24p [Methanobrevibacter ruminantium M1]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            S+  +VG++V V  G F    G V+++D ++ +V VE
Sbjct: 39  RSLPIKVGDKVQVVRGDFKGHEGKVESIDAKRYKVTVE 76


>gi|256842180|ref|ZP_05547685.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374955|ref|ZP_06984912.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|256736496|gb|EEU49825.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267455|gb|EFI09111.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 178

 Score = 41.2 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 13/161 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++               + +   L     ++ +P +  + ++KG+KV  +      
Sbjct: 8   QWYVMR-------DLKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQD 60

Query: 64  YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPV 118
            + +            +  T +      T   P  V+D E++  M  V ++       P 
Sbjct: 61  LLFVYDSRQHLDSIVERTKTLQYRWLRNTFREPMTVSDLEMDRFMQAVSSSDSPKYYLPE 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158
                  G ++ +  G    + G +  +   K  R+ VE+ 
Sbjct: 121 EITPQMCGRKIRIIGGSLNGYEGCLLKIRGSKIKRLLVELK 161


>gi|220923747|ref|YP_002499049.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219948354|gb|ACL58746.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 212

 Score = 41.2 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 25/135 (18%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+V++ SN E+K            GL+       +P+   +  R+GR      R  PG
Sbjct: 39  RWYVVRIDSNRERKI---------SEGLEAAGFATCVPASSTLVERRGRIREVRHRAAPG 89

Query: 64  YVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           Y+ +     TD               +     PS     E   +  + +    RP   V 
Sbjct: 90  YLFVGVDPGTDGRAALW----AYHDCVMASRLPSVFQLEEGRIVQARQQGEADRPFYCVM 145

Query: 123 FEVGERVCVSDGPFA 137
                      GPF 
Sbjct: 146 -----------GPFQ 149


>gi|125991228|ref|NP_776108.2| G patch domain and KOW motifs-containing protein [Mus musculus]
 gi|134034133|sp|Q56A08|GPKOW_MOUSE RecName: Full=G patch domain and KOW motifs-containing protein;
           AltName: Full=Protein MOS2 homolog
 gi|122889507|emb|CAM13581.1| G patch domain and KOW motifs [Mus musculus]
          Length = 488

 Score = 40.8 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  R+  V
Sbjct: 233 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 284


>gi|329955864|ref|ZP_08296667.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
 gi|328525244|gb|EGF52294.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
          Length = 171

 Score = 40.8 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 12/174 (6%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+ V V  N E K    +              E+ +P + V     G++V   +    
Sbjct: 8   KHWHAVYVRHNTEFKVETWLRE---------QGVEVYLPVQDVFLEYAGKRVKVTKPVIT 58

Query: 63  GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
           G V +    ++  V     +        GT            +       +     + + 
Sbjct: 59  GMVFVCLSRSELSVVEQAPNVHHFFSKRGTNAPLVIPDQQMADFRFMVDLSDTSILMVNE 118

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
               G  V V+ G      G +    E K  + V +   G    V +  + V +
Sbjct: 119 PITPGTMVTVAKGSMQGVRGEMVKY-ESKYYIAVRLQELGCA-LVSVPVSYVRR 170


>gi|38571790|gb|AAH62646.1| Gpkow protein [Mus musculus]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  R+  V
Sbjct: 113 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 164


>gi|254474575|ref|ZP_05087961.1| hypothetical protein RR11_410 [Ruegeria sp. R11]
 gi|214028818|gb|EEB69653.1| hypothetical protein RR11_410 [Ruegeria sp. R11]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 34/200 (17%)

Query: 2   TPRWYIVQVYSN-------------CE-----------KKAVESIGG-RLSRSGLDHLVT 36
              WY V++ +               E           +K   S     +    L     
Sbjct: 11  EMDWYAVKLKARQNGGRRETLLGVEYETYKAGNGRMVRRKVKGSGQRVFVPELVLQKAGF 70

Query: 37  EITIP---SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93
           E+ +P     + +S  +  K    R    G++ +        +H +     V G +G G 
Sbjct: 71  EVFLPVKREWQRISRFRPEKELRSRPAMEGWLFVGWPAGQARFHELMALDVVAGVMGAGG 130

Query: 94  NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV----GERVCVSDGPFASFNGIVKNVDEE 149
            P  ++D+++  +M +     +R  SS   +     G+ V V  GP          +D  
Sbjct: 131 QPVRISDAKVRFLMRKFGGGRKRRRSSDVDQPRFAAGDLVRVEAGPLEGQQ--FALLDVT 188

Query: 150 KSRVHVEVVIFGRVTPVELA 169
                  + + G+   VEL 
Sbjct: 189 GGSARAVMTLLGKDVEVELE 208


>gi|150008810|ref|YP_001303553.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149937234|gb|ABR43931.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 174

 Score = 40.8 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 13/159 (8%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY ++V+ N        I   LSR G++  +        R      G  V      
Sbjct: 1   MMKKWYALKVFYNR----FSEIKATLSRDGIESYIPM----KTRSYPQPDGEVVIRRVPL 52

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
               + ++               K + +   G         E   +   + ++++     
Sbjct: 53  VAMLMFLRCDDDYISSLNSILDEKAMVYHRPGTQIPASIPDEEMDMFIMLTSSMEDGFEQ 112

Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
            P      +  E+  V+ G +A   G  + + + K  V 
Sbjct: 113 IPYDDNLVKNAEKYRVTGGEYAGVVGYYRRIKKNKRLVI 151


>gi|255015010|ref|ZP_05287136.1| putative transcriptional regulator Updx-like protein [Bacteroides
           sp. 2_1_7]
          Length = 178

 Score = 40.8 bits (94), Expect = 0.076,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 13/161 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++               + +   L     ++ +P +  + ++KG+KV  +      
Sbjct: 8   QWYVMR-------DLKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQD 60

Query: 64  YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPV 118
            + +            +  T +      T   P  V+D E++  +  V ++       P 
Sbjct: 61  LLFVYDSRQHLDSIVERTKTLQYRWLRNTFREPMTVSDLEMDRFIQAVSSSDSPKYYLPE 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158
                  G ++ +  G    + G +  +   K  R+ VE+ 
Sbjct: 121 EITPQMCGHKIRIIGGALNGYEGCLLKIRGSKIKRLLVELK 161


>gi|253570624|ref|ZP_04848032.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839573|gb|EES67656.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 354

 Score = 40.8 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 16/145 (11%)

Query: 16  KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75
               E +  R              I    V   +  R    E+    G V ++    D  
Sbjct: 56  NAVNEKLKER----------YCTFIHKSVVYKRKNKRIAKDEKPTISGLVFVQGESDDIQ 105

Query: 76  YHTIKDTPKVIGF-LGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGER-V 129
               ++   +      +    + + ++ ++  M   +    R    P +  ++  G   V
Sbjct: 106 SFLCENFFGLYLVKDCSTGKIAVIHNNVMQSFMQVSQVEPARIRFMPHTFDYYSSGNTLV 165

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVH 154
            ++ GP     G    +  +K  V 
Sbjct: 166 RITSGPLTGLEGYRIRISRDKCLVT 190


>gi|315425500|dbj|BAJ47162.1| hypothetical protein HGMM_F42C08C15 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427493|dbj|BAJ49097.1| hypothetical protein HGMM_F32H09C36 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427511|dbj|BAJ49114.1| hypothetical protein HGMM_F43G04C15 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 13/154 (8%)

Query: 23  GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
             R      +    +  +P  +++  +             GYV ++A   + +   +++ 
Sbjct: 159 ELRFKVLEQEEWRDDARLPLFKLIE-KPAIASIFILPALKGYVFVEATSKEVIADALQNV 217

Query: 83  PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142
             V            +               V++P+  V    G+ V +  GP     G 
Sbjct: 218 RHVKARPPMPVKLETIASHL-----------VEKPLIEV-LAAGQMVEIVSGPLKGIVGK 265

Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           V  V++ +  V +E+       P+ ++ + V  +
Sbjct: 266 VIRVEKSRREVTLELKEAAFQLPISVSIDAVRPL 299


>gi|297724235|ref|NP_001174481.1| Os05g0506200 [Oryza sativa Japonica Group]
 gi|255676476|dbj|BAH93209.1| Os05g0506200 [Oryza sativa Japonica Group]
          Length = 586

 Score = 40.8 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
              A  +       +       F  + +NP P+   E     +       R      F +
Sbjct: 53  FFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 110

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           GE + +  GP   +   V  +   ++ V V++    ++  V+  +  V
Sbjct: 111 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 156


>gi|222632160|gb|EEE64292.1| hypothetical protein OsJ_19129 [Oryza sativa Japonica Group]
          Length = 1559

 Score = 40.8 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
              A  +       +       F  + +NP P+   E     +       R      F +
Sbjct: 607 FFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 664

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           GE + +  GP   +   V  +   ++ V V++    ++  V+  +  V
Sbjct: 665 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 710


>gi|52353367|gb|AAU43935.1| unknown protein [Oryza sativa Japonica Group]
          Length = 1152

 Score = 40.8 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
              A  +       +       F  + +NP P+   E     +       R      F +
Sbjct: 549 FFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 606

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           GE + +  GP   +   V  +   ++ V V++    ++  V+  +  V
Sbjct: 607 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 652


>gi|320164915|gb|EFW41814.1| hypothetical protein CAOG_06946 [Capsaspora owczarzaki ATCC 30864]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)

Query: 83  PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142
                                   + +++      V       G++V +  GP     G 
Sbjct: 14  HAFQQSTVYMRKMLLGMHMRHLRKIKKLDLLTPHLVPKPKLRKGDKVQIVGGPHIGQRGE 73

Query: 143 VKNVDEEKSRVHVE-VVIFGRVTPVE 167
           V ++     R+ V  V +  R    E
Sbjct: 74  VVSIYRRSGRITVAGVNMVNRTLKTE 99


>gi|296235455|ref|XP_002762899.1| PREDICTED: G patch domain and KOW motifs-containing protein
           [Callithrix jacchus]
          Length = 475

 Score = 40.8 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP     G V+ +D +  R  V + +  R+  V
Sbjct: 232 DKEDQPQGLVPGGAVMVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRMVTV 283


>gi|26324390|dbj|BAC25949.1| unnamed protein product [Mus musculus]
 gi|112362424|gb|AAI20680.1| Gpkow protein [Mus musculus]
 gi|133777142|gb|AAH92224.2| Gpkow protein [Mus musculus]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  R+  V
Sbjct: 102 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 153


>gi|159125111|gb|EDP50228.1| transcription initiation protein spt5 [Aspergillus fumigatus A1163]
          Length = 1058

 Score = 40.8 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  +  E++ V +I  R+              P      +R             GY+ +
Sbjct: 246 VRCKAGKEREVVFAIQKRIEER-----------PPGSRKPIRIISAFERGG-AMSGYIYV 293

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 294 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 341

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ VD     V V +
Sbjct: 342 WVRIKRGKYQGDLAQIEEVDTNGLDVTVRL 371


>gi|70994272|ref|XP_751976.1| transcription initiation protein spt5 [Aspergillus fumigatus Af293]
 gi|74671343|sp|Q4WP96|SPT5_ASPFU RecName: Full=Transcription elongation factor spt5; AltName:
           Full=Chromatin elongation factor spt5
 gi|66849610|gb|EAL89938.1| transcription initiation protein spt5 [Aspergillus fumigatus Af293]
          Length = 1058

 Score = 40.8 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  +  E++ V +I  R+              P      +R             GY+ +
Sbjct: 246 VRCKAGKEREVVFAIQKRIEER-----------PPGSRKPIRIISAFERGG-AMSGYIYV 293

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 294 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 341

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ VD     V V +
Sbjct: 342 WVRIKRGKYQGDLAQIEEVDTNGLDVTVRL 371


>gi|117306436|gb|AAI25336.1| Gpkow protein [Mus musculus]
          Length = 393

 Score = 40.8 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  R+  V
Sbjct: 138 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 189


>gi|300795010|ref|NP_001180181.1| G patch domain and KOW motifs-containing protein [Bos taurus]
 gi|297493123|ref|XP_002700126.1| PREDICTED: G patch domain and KOW motifs [Bos taurus]
 gi|296470759|gb|DAA12874.1| G patch domain and KOW motifs [Bos taurus]
          Length = 480

 Score = 40.8 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 15/79 (18%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE---- 167
               +         G  V V  GP     G V+ +D +  R  V + +  R+  V     
Sbjct: 227 QEKDKEDQPKGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRMVTVSEYCL 286

Query: 168 -----------LAYNQVEK 175
                      L  +QV +
Sbjct: 287 RPVSQKEFDKNLNLSQVSR 305


>gi|1663764|gb|AAB18640.1| T54 protein [Homo sapiens]
          Length = 378

 Score = 40.4 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +         G  V V  GP     G V+ +D +  R  V + ++ RV  V
Sbjct: 228 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVWSRVVTV 282


>gi|146091153|ref|XP_001466459.1| transcription elongation regulator-like protein [Leishmania
           infantum JPCM5]
 gi|134070821|emb|CAM69179.1| transcription elongation regulator-like protein [Leishmania
           infantum JPCM5]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 34  LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80
            +T   +P E  V     +        F               YV       D+  + +K
Sbjct: 301 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGAREMENSYVWGDLHF-DREGYLLK 359

Query: 81  DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV-----GERVCVSDGP 135
                +   G         +    +   + +       +    +V     G+ V V+ G 
Sbjct: 360 TVSTRMVVSGAQMEQPSTEELARFYNDQREKVERALKAAEAAAQVPNISIGDSVRVTTGQ 419

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  G+V+NV    +   +   + GRV P+++   QVE
Sbjct: 420 LRNTIGVVENVFTNTNTAVLTCTMPGRVQPIKV---QVE 455


>gi|322500301|emb|CBZ35379.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 34  LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80
            +T   +P E  V     +        F               YV       D+  + +K
Sbjct: 301 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGAREMENSYVWGDLHF-DREGYLLK 359

Query: 81  DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV-----GERVCVSDGP 135
                +   G         +    +   + +       +    +V     G+ V V+ G 
Sbjct: 360 TVSTRMVVSGAQMEQPSTEELARFYNDQREKVERALKAAEAAAQVPNISIGDSVRVTTGQ 419

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  G+V+NV    +   +   + GRV P+++   QVE
Sbjct: 420 LRNTIGVVENVFTNTNTAVLTCTMPGRVQPIKV---QVE 455


>gi|256842209|ref|ZP_05547713.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308961|ref|ZP_07214906.1| putative transcription termination factor NusG [Bacteroides sp.
           20_3]
 gi|256736093|gb|EEU49423.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300832987|gb|EFK63612.1| putative transcription termination factor NusG [Bacteroides sp.
           20_3]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ ++V      K  E I   L +  +D        P E  V +R G +    +     
Sbjct: 10  HWFALKV---FYNKVFE-IEESLKKDDIDCYF-----PCEYAVVMRNGVRKIIRKPIISS 60

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV--- 118
            +   +     +    + T KVI +    E      +      +I   V ++ ++ +   
Sbjct: 61  ILFFHSTTLRAMEIQRQFTDKVILYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEYL 120

Query: 119 --SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              S  F  GERV V DG F    G +  + +  SR+ V +
Sbjct: 121 GADSTKFCRGERVRVIDGKFKGAEGYICRIKK-NSRLVVAI 160


>gi|74007394|ref|XP_538033.2| PREDICTED: similar to G patch domain and KOW motifs [Canis
           familiaris]
          Length = 484

 Score = 40.4 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           +         G  V V  GP     G V+ +D +  R  V + +  R+  V
Sbjct: 234 KEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGNRMVTV 284


>gi|218197068|gb|EEC79495.1| hypothetical protein OsI_20547 [Oryza sativa Indica Group]
          Length = 1564

 Score = 40.4 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
              A  +       +       F  +  NP P+   E     +       R      F +
Sbjct: 605 FFCAQCSSCENVKKRKELASFTFGNSDNNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 662

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           GE + +  GP   +   V  +   ++ V V++    ++  V+  +  V
Sbjct: 663 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 708


>gi|327282260|ref|XP_003225861.1| PREDICTED: LOW QUALITY PROTEIN: G patch domain and KOW
           motifs-containing protein-like [Anolis carolinensis]
          Length = 481

 Score = 40.4 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF---EVGERVCVSDGPFASFNGIVKN 145
           LG G + S   + E       ++   + P           G  V +  GP     G ++ 
Sbjct: 199 LGLGADRSAAQELEPIGRRRPLKPGEEPPKGKDEPLGLVPGGAVFIEAGPHKELYGKIEG 258

Query: 146 VDEEKSRVHVEVVIFGRVTPV 166
           VD + +R+ V++ I G+   V
Sbjct: 259 VDGDNARIMVKLAIGGKTVTV 279


>gi|301764757|ref|XP_002917796.1| PREDICTED: G patch domain and KOW motifs-containing protein-like
           [Ailuropoda melanoleuca]
          Length = 476

 Score = 40.4 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            G  V V  GP     G ++ +D +  R  V + +  R+  V
Sbjct: 243 PGGAVMVLSGPHRGLYGKIEGLDPDNVRAMVRLAVGNRMVTV 284


>gi|281353644|gb|EFB29228.1| hypothetical protein PANDA_006161 [Ailuropoda melanoleuca]
          Length = 477

 Score = 40.4 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            G  V V  GP     G ++ +D +  R  V + +  R+  V
Sbjct: 243 PGGAVMVLSGPHRGLYGKIEGLDPDNVRAMVRLAVGNRMVTV 284


>gi|325287059|ref|YP_004262849.1| 50S ribosomal protein L24 [Cellulophaga lytica DSM 7489]
 gi|324322513|gb|ADY29978.1| ribosomal protein L24 [Cellulophaga lytica DSM 7489]
          Length = 104

 Score = 40.4 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V +  G      G V +VD EK++  VE
Sbjct: 1   MMKLKIKTGDTVRIIAGDHKGTEGKVVSVDREKNKAIVE 39


>gi|169839653|ref|ZP_02872841.1| Transcription antitermination protein nusG [candidate division TM7
           single-cell isolate TM7a]
          Length = 104

 Score = 40.4 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 19  VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKA--------- 69
              +  R+    L   V  I +P E V+  ++G+ V   R+ FP YV+I+          
Sbjct: 2   AADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLFPSYVMIEMLSVREENEL 61

Query: 70  ----VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
                +    ++ I++T  V GF+G G +P P++D E   ++
Sbjct: 62  GLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEATDLL 103


>gi|207110632|ref|ZP_03244794.1| transcription antitermination protein NusG [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 30

 Score = 40.4 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 3  PRWYIVQVYSNCEKKAVESIGGRLSRSGL 31
            WY +Q YS  E+   ++I    +   +
Sbjct: 1  MDWYAIQTYSGSEQSVKKAIENLANDHNI 29


>gi|150006689|ref|YP_001301432.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|298377654|ref|ZP_06987605.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
 gi|149935113|gb|ABR41810.1| putative transcriptional regulator UpxY-like protein
           [Parabacteroides distasonis ATCC 8503]
 gi|298265357|gb|EFI07019.1| transcription termination factor NusG [Bacteroides sp. 3_1_19]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ ++V      K  E I   L +  +D        P E  V +R G +    +     
Sbjct: 10  HWFALKV---FYNKVFE-IEESLKKDDIDCYF-----PCEDAVVMRNGVRKIIRKPIISS 60

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV--- 118
            +   +     +    + T KVI +    E      +      +I   V ++ ++ +   
Sbjct: 61  ILFFHSTTLRAMEIQRQFTDKVILYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEYL 120

Query: 119 --SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
              S  F  GERV V DG F    G +  + +  SR+ V +
Sbjct: 121 GADSTKFCRGERVRVIDGKFKGAEGYICRIKK-NSRLVVAI 160


>gi|198445322|gb|ACH88387.1| NusG [Candidatus Liberibacter asiaticus]
          Length = 25

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/25 (100%), Positives = 25/25 (100%)

Query: 153 VHVEVVIFGRVTPVELAYNQVEKIV 177
           VHVEVVIFGRVTPVELAYNQVEKIV
Sbjct: 1   VHVEVVIFGRVTPVELAYNQVEKIV 25


>gi|321309525|ref|YP_004191854.1| transcription antitermination protein [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801369|emb|CBY92015.1| transcription antitermination protein [Mycoplasma haemofelis str.
           Langford 1]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            F G+++ ++ E+  + V V +FGR  PV    ++V +I
Sbjct: 256 GFKGVIQEINFEEGTLVVGVQMFGRRQPVACKISEVSEI 294


>gi|268323264|emb|CBH36852.1| putative transcription antitermination protein nusG [uncultured
           archaeon]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 28/152 (18%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y V+   N E      + G L   G+     +  +  E                   GY+
Sbjct: 5   YAVKTTVNQELAVATMVEGALGEEGVKDHGIKAIMVPEE----------------LKGYL 48

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A   + +   I+  P   G +        V                    S      
Sbjct: 49  LVEASFPEALEQIIQSIPHARGLVKGVMGLEEVEHFLTPK------------PSVTGILE 96

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + +  GPF      VK VDE    + +E+
Sbjct: 97  GSIIEIVSGPFKGERARVKKVDEAHEEITIEL 128


>gi|109130748|ref|XP_001105674.1| PREDICTED: G patch domain and KOW motifs-containing protein-like
           [Macaca mulatta]
          Length = 498

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +         G  V V  GP     G V+ +D +  R  V + +  RV  V
Sbjct: 252 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 306


>gi|62089198|dbj|BAD93043.1| G patch domain and KOW motifs variant [Homo sapiens]
          Length = 475

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +         G  V V  GP     G V+ +D +  R  V + +  RV  V
Sbjct: 229 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 283


>gi|15811782|ref|NP_056513.2| G patch domain and KOW motifs-containing protein [Homo sapiens]
 gi|134048659|sp|Q92917|GPKOW_HUMAN RecName: Full=G patch domain and KOW motifs-containing protein;
           AltName: Full=G patch domain-containing protein 5;
           AltName: Full=Protein MOS2 homolog; AltName:
           Full=Protein T54
 gi|12653257|gb|AAH00397.1| G patch domain and KOW motifs [Homo sapiens]
 gi|13111951|gb|AAH03148.1| G patch domain and KOW motifs [Homo sapiens]
 gi|119571079|gb|EAW50694.1| G patch domain and KOW motifs [Homo sapiens]
 gi|312151834|gb|ADQ32429.1| G patch domain and KOW motifs [synthetic construct]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +         G  V V  GP     G V+ +D +  R  V + +  RV  V
Sbjct: 230 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 284


>gi|311276265|ref|XP_003135125.1| PREDICTED: G patch domain and KOW motifs-containing protein-like
           [Sus scrofa]
          Length = 482

 Score = 40.0 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP     G ++ +D +  R  V + +  R+  V
Sbjct: 230 DKEDQPRGLVPGGAVVVLSGPHRGLYGKIEGLDPDNVRAMVRLAVGSRMVTV 281


>gi|307322274|ref|ZP_07601640.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306892091|gb|EFN22911.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 205

 Score = 40.0 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 37/175 (21%)

Query: 4   RWYIVQVYSNC-----------EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR 52
           RWY ++V               E + +ESI  R  R        +I +PS     +R  R
Sbjct: 5   RWYAIRVAPGYQRMAAVDERLPENRPMESIIERNRRKD----GFDIFMPSFYT-ELRHHR 59

Query: 53  KVNSERRFFPGYV-LIKAVMTDKVYHTIKDTPKVIGFLGT---------GENPSPVTDSE 102
                ++ FP  V      +    +  ++    V+ FL                 +  +E
Sbjct: 60  TKQILQKRFPFLVGYASVNLPRLNFEELRRVDGVVCFLRGANYGPLEFPDGTIEALYFAE 119

Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            E     +     R  +    ++               G ++ +  +  +V V +
Sbjct: 120 HERRQAFLYEQHCRKENERPEQI-----------QHLRGQLRKILPKGRKVRVSM 163


>gi|255038100|ref|YP_003088721.1| 50S ribosomal protein L24 [Dyadobacter fermentans DSM 18053]
 gi|254950856|gb|ACT95556.1| ribosomal protein L24 [Dyadobacter fermentans DSM 18053]
          Length = 113

 Score = 40.0 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           +E+  ++  + +    G+ V V  G      G++  V  EK R  VE V +
Sbjct: 1   MESTNKKAPAKLHVRKGDTVKVISGNAKGETGVITKVLVEKQRATVEGVNM 51


>gi|99081515|ref|YP_613669.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040]
 gi|99037795|gb|ABF64407.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040]
          Length = 189

 Score = 40.0 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 16/187 (8%)

Query: 3   PRWYIVQVYSNC---EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59
             WY+ +  +     E  A +  G       L  L  E   P          ++      
Sbjct: 1   MTWYLGRTTTRHIAPEPGAEKERGEFAVERQLRALGIEAHAPRRIEFKRVGKKRHAEPIT 60

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--------TGENPSPVTDSEIEHIMNQVE 111
                  I A +   ++        +   L             P             ++ 
Sbjct: 61  SAYLPGYIFAEIPASMFTRAIQCRGLSASLMAVPAQEVLHHVKPFIAKVKSENADAERII 120

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFAS----FNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
            +  R      F+ GE + V  GPFA     F  +V+   +    +  ++ I GR+T V+
Sbjct: 121 ESRDRAAMC-QFQPGEALDVLAGPFAERLVKFTRMVEAAHDSYPMIEAQIEILGRLTRVK 179

Query: 168 LAYNQVE 174
           +    V 
Sbjct: 180 IDPLDVR 186


>gi|254509729|ref|ZP_05121796.1| hypothetical protein RKLH11_261 [Rhodobacteraceae bacterium KLH11]
 gi|221533440|gb|EEE36428.1| hypothetical protein RKLH11_261 [Rhodobacteraceae bacterium KLH11]
          Length = 222

 Score = 40.0 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 31  LDHLVTEITIPSERVVSVRK---GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIG 87
           L     E+ +P ++V+  +      K    +     ++ +   + +  +H + +   + G
Sbjct: 63  LRRAGFEVFLPIKKVLRRKNRYTPEKALISQPLLVDWLFVGWPVGESRWHDLMELDVISG 122

Query: 88  FLGTGENPSPVTDSEIEHIMNQV------EAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141
            +GTG +P     + +  +M Q           +   +   F VG+   V  GP    + 
Sbjct: 123 VMGTGGHPIEFPAARVMSLMRQWGGGHLSSECRRYLKTGSEFAVGDTARVIAGPLDGVHV 182

Query: 142 IVKNVDEEKSRVHVEVVIFGRVTPVEL--AYNQVEK 175
            V  VD     V   + + G     E+     +V K
Sbjct: 183 RV--VDVSGPTVKAALGMLGSEVVTEIRGDLLEVIK 216


>gi|301307918|ref|ZP_07213874.1| putative transcriptional regulator [Bacteroides sp. 20_3]
 gi|300834261|gb|EFK64875.1| putative transcriptional regulator [Bacteroides sp. 20_3]
          Length = 178

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 14/171 (8%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +WY+++               + +   L     ++ +P +  + ++K +KV  +      
Sbjct: 8   QWYVMR-------DLKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKDKKVREKVPVIQD 60

Query: 64  YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPV 118
            + +            +  T +      T   P  V+D E++  +  V ++       P 
Sbjct: 61  LLFVYDSRRHLDSIVERTKTLQYRWLRNTFREPMTVSDLEMDRFIQAVSSSDSPKYYLPE 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR-VTPVEL 168
                  G ++ +  G    + G +  +   K +  + V + G     VE+
Sbjct: 121 EITPQMCGRKIRIIGGSLNGYEGCLLKIRGSKIK-RLLVELKGYLAVAVEV 170


>gi|49206933|ref|YP_026130.1| AnfA1 [Serratia entomophila]
 gi|48995180|gb|AAT48331.1| AnfA1 [Serratia entomophila]
          Length = 148

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+++         ++     L   G++        P+E  V     +  +     
Sbjct: 1   MKKKWYLIRCNYGK----IDLGQKSLEAMGVE-CFCPRLSPAELKVLFDNKKNFSKGWCI 55

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           FP Y+ ++  +       I+    V GF+  G   + + D  I  IM 
Sbjct: 56  FPPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGINSIPDIVIGKIMK 103


>gi|224535680|ref|ZP_03676219.1| hypothetical protein BACCELL_00544 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522718|gb|EEF91823.1| hypothetical protein BACCELL_00544 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 125

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
                 + + A  +D      + +               ++DSE++  +           
Sbjct: 2   PVVHNLLFVHACPSDVKRIKSQVSYLQYITDTRSGQKIIISDSEMQRFIAVAGTYNDHLM 61

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                 +    G +V ++ G F    GI   V   + R  V + I G
Sbjct: 62  YFQPDELNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVIEIQG 107


>gi|78174298|gb|AAI07645.1| T54l protein [Danio rerio]
          Length = 328

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +   ++    G  V V  G      G ++ VD +  RV V++ I G+   +
Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294


>gi|309797734|ref|ZP_07692119.1| transcription termination factor NusG [Escherichia coli MS 145-7]
 gi|308118654|gb|EFO55916.1| transcription termination factor NusG [Escherichia coli MS 145-7]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 14/134 (10%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR---KVNSER 58
             WY++Q   +                + L+ L      P E     R  +         
Sbjct: 1   MEWYVLQFTTTRF----------AAVFAHLERLNFSYFCPMETERYRRPDKIISYRERRL 50

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118
             FPGY+ I+A   +    TI   P V  F+  G  P PV +  +  ++ +      +  
Sbjct: 51  PLFPGYLFIQADFEEVHSTTITAIPYVQRFISFGGEPLPVPEDVMAELLYRQSHTTAQAN 110

Query: 119 SSVFFEVGERVCVS 132
                   +   + 
Sbjct: 111 LLRKSIPHDFAEIL 124


>gi|119719162|ref|YP_919657.1| 50S ribosomal protein L24P [Thermofilum pendens Hrk 5]
 gi|218547077|sp|A1RWS4|RL24_THEPD RecName: Full=50S ribosomal protein L24P
 gi|119524282|gb|ABL77654.1| LSU ribosomal protein L24P [Thermofilum pendens Hrk 5]
          Length = 131

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    G+RV +  G F    G V +VD +K R+HVE
Sbjct: 45  RIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVE 81


>gi|157820365|ref|NP_001102851.1| G patch domain and KOW motifs-containing protein [Rattus
           norvegicus]
 gi|149028450|gb|EDL83835.1| rCG22908, isoform CRA_a [Rattus norvegicus]
          Length = 487

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  RV  V
Sbjct: 232 DKEGQPQGLMHGGAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRVVNV 283


>gi|159463654|ref|XP_001690057.1| global transcription factor [Chlamydomonas reinhardtii]
 gi|158284045|gb|EDP09795.1| global transcription factor [Chlamydomonas reinhardtii]
          Length = 1188

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRV 163
            +           +   F  G+ V +  G   +    V  V  + ++V     I  FG  
Sbjct: 412 SLMATLPTDGTAATKGTFMKGDTVRIVKGDLENLTARVTGVSADGTKVTAVPDIKGFGEE 471

Query: 164 TPVELAYNQVEKI 176
             VE   +++ K+
Sbjct: 472 --VEFDMDELAKV 482


>gi|319643638|ref|ZP_07998257.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
 gi|317384737|gb|EFV65697.1| transcriptional regulator UpxY-like protein [Bacteroides sp.
           3_1_40A]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 14/132 (10%)

Query: 36  TEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK----------DTPKV 85
                PS + V    G+ VN++R     YV ++A   D      +             K 
Sbjct: 19  FGFFAPSYQEVRRIDGKFVNTQRPLLFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKR 78

Query: 86  IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145
             F    +              N +   + +P        G+R+ +++G F      V  
Sbjct: 79  EYFPYLSDAAMENLQWVARSYSNTLPVYIPQPD---GLRKGDRIRITEGRFKGVEATVV- 134

Query: 146 VDEEKSRVHVEV 157
           +     R  V V
Sbjct: 135 IQPGAGRKDVMV 146


>gi|261880666|ref|ZP_06007093.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332619|gb|EFA43405.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 8/147 (5%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRFFPG 63
           W+ ++++S+      E I   L   GL+  +    +   +R   V++  +       F  
Sbjct: 32  WFALRLFSSR----QEEIAKMLENEGLEVFIPMEYVDVEDRRNHVKRVLRPVVRNLLFIK 87

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
             + + +M   +         +    G+ +          E         + R   S   
Sbjct: 88  KTVCQKIMRGIIAALPYRVSIIRKTPGSIDYYEIPAREMFEFRAMCNPEILARKFLSEAQ 147

Query: 124 ---EVGERVCVSDGPFASFNGIVKNVD 147
              + G  V V+ GP     G +   +
Sbjct: 148 AKLKAGTPVMVTHGPLKGLQGKLVRSN 174


>gi|238491498|ref|XP_002376986.1| transcription initiation protein spt5 [Aspergillus flavus NRRL3357]
 gi|220697399|gb|EED53740.1| transcription initiation protein spt5 [Aspergillus flavus NRRL3357]
          Length = 895

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+     E++ + +I  R+    +        I +                    GY+ +
Sbjct: 83  VRCKPGKEREVIFAIQKRIEERPMGSRNPMKIISAFERGG------------AMSGYIYV 130

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 131 EARRQADVMDALQDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELLPGG 178

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G + +    ++ V+     V V +
Sbjct: 179 WVRIKRGKYQNDLAQIEEVETNGLAVTVRL 208


>gi|169773511|ref|XP_001821224.1| transcription elongation factor SPT5 [Aspergillus oryzae RIB40]
 gi|110826533|sp|Q2UGU3|SPT5_ASPOR RecName: Full=Transcription elongation factor spt5; AltName:
           Full=Chromatin elongation factor spt5
 gi|83769085|dbj|BAE59222.1| unnamed protein product [Aspergillus oryzae]
          Length = 1026

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+     E++ + +I  R+    +        I +                    GY+ +
Sbjct: 214 VRCKPGKEREVIFAIQKRIEERPMGSRNPMKIISAFERGG------------AMSGYIYV 261

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 262 EARRQADVMDALQDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELLPGG 309

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G + +    ++ V+     V V +
Sbjct: 310 WVRIKRGKYQNDLAQIEEVETNGLAVTVRL 339


>gi|145347649|ref|XP_001418275.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578504|gb|ABO96568.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 938

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  AV    + + F  G++V + +G   +  G+V+ +D +  RV V 
Sbjct: 303 LAALSKAVGTRKTDLKFMPGDQVIIVEGDLRNLEGVVERIDPD-GRVVVN 351


>gi|225011658|ref|ZP_03702096.1| ribosomal protein L24 [Flavobacteria bacterium MS024-2A]
 gi|225004161|gb|EEG42133.1| ribosomal protein L24 [Flavobacteria bacterium MS024-2A]
          Length = 104

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +  + G+ V V  G      G V ++  EK+R  VE
Sbjct: 4   KIKIKKGDTVRVIAGSEKGSEGTVVSISREKNRAIVE 40


>gi|159041522|ref|YP_001540774.1| transcription termination antitermination factor [Caldivirga
           maquilingensis IC-167]
 gi|157920357|gb|ABW01784.1| Transcription termination antitermination factor [Caldivirga
           maquilingensis IC-167]
          Length = 155

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 32/169 (18%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+V +  E      I  RL             +PS                    G V +
Sbjct: 11  VRVIAGQEYNVAAIIRTRLELME-KDKRKYYNVPS------------IVVPPNVQGQVYL 57

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +   +           +  G +                    +   ++     +  ++ +
Sbjct: 58  ETPHSYVAIDLSTGIKQYRGLMMG---------------KVPLTELMKMIKREIKVQIND 102

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT--PVELAYNQVE 174
            V +   PF  F   V +VDE+ + V + +  F   T  PV L    + 
Sbjct: 103 VVEIITEPFRGFKAKVVDVDEKNNTVKLLL--FDTATNIPVTLPIKSIR 149


>gi|327294527|ref|XP_003231959.1| hypothetical protein TERG_07577 [Trichophyton rubrum CBS 118892]
 gi|326465904|gb|EGD91357.1| hypothetical protein TERG_07577 [Trichophyton rubrum CBS 118892]
          Length = 356

 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
               +   +  +   + +   +    + V  V F  G+RVC+  G      G +  VDEE
Sbjct: 69  RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKILQVDEE 128

Query: 150 KSRVHVE-VVIFG-----------------RVTPVELAYNQVEKIV 177
              V VE V +F                  R  PV ++++ V  +V
Sbjct: 129 SQSVTVEGVNMFDVEFPAFALAEDSDKRPYRSYPVPISFDDVRLVV 174


>gi|330998566|ref|ZP_08322385.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
 gi|329568113|gb|EGG49934.1| transcription termination/antitermination factor NusG
           [Paraprevotella xylaniphila YIT 11841]
          Length = 184

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 13/160 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W++++           S     +   L  +   +  P   VV++ +G++V     F    
Sbjct: 15  WFVLR-------DLKRSNARHPAYRQLAEMGLRVFTPMHEVVTLVRGQRVRKNVPFLHDL 67

Query: 65  VLIKAVMTDKVYHTIKD-TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPVS 119
           + ++   +       +D T +     G   +P  V   E+E  +  VE+  +     P  
Sbjct: 68  LFVRERYSALRSVVERDPTLQFRYVRGGYCSPMTVRTVEMERFIRAVESTFRPRYYLPGE 127

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158
                +G +V +  GP   + G + ++   +  R+ +++ 
Sbjct: 128 ISPSMIGRQVLIVGGPLNGYEGHLLSIRGSRVKRLFIDLS 167


>gi|95132389|gb|AAI16536.1| T54l protein [Danio rerio]
          Length = 364

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +   ++    G  V V  G      G ++ VD +  RV V++ I G+   +
Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294


>gi|322826887|gb|EFZ31287.1| transcription initiation protein, putative [Trypanosoma cruzi]
          Length = 579

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 21  SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP-----GYV------LIKA 69
            +   +    + + VT   +P E  V     +        F       YV          
Sbjct: 168 DLAQVVEVHPISNQVTVKVVPREDFVGKPFNKIEMRLPPRFFVPTLAAYVQERGDFYRWG 227

Query: 70  VMT-DKVYHTIKDTPKVIGFLGTG------ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            +T DK  + +K     +   GT       E  +   +++ E +   V            
Sbjct: 228 DLTFDKEGYLLKTVSSRMVISGTKMENPTVEEIALFFNNDRERVREAVARFASVGHQGAD 287

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR----VTPVEL 168
             +G  V V  G      G ++N+  + + V +   + GR       VEL
Sbjct: 288 LRIGNTVRVVSGQLRETVGTIENIFLDTNTVSLLCPVPGRKEPIKVRVEL 337


>gi|3355884|dbj|BAA31975.1| NusG-like protein [Streptomyces lavendulae]
          Length = 19

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 16/18 (88%)

Query: 158 VIFGRVTPVELAYNQVEK 175
            IFGR TPVEL+++Q++K
Sbjct: 1   EIFGRETPVELSFDQIQK 18


>gi|187469065|gb|AAI66817.1| Gpkow protein [Rattus norvegicus]
          Length = 357

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
            +         G  V V  GP+    G V+ +D +  R  V + +  RV  V
Sbjct: 102 DKEGQPQGLMHGGAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRVVNV 153


>gi|290982037|ref|XP_002673737.1| predicted protein [Naegleria gruberi]
 gi|284087323|gb|EFC40993.1| predicted protein [Naegleria gruberi]
          Length = 963

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 19/148 (12%)

Query: 32  DHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT 91
             L  +  +P      V   +   +    +  Y   K        H    + +    + T
Sbjct: 274 QRLFNKELLPQTEQEKVEDAKDQIT----YSVYQGNKFHDGYVYKHIHLKSLETKDIIPT 329

Query: 92  GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
                    +E       +           +F+ G+ V V  G      G + N+DEE  
Sbjct: 330 NSELQIYYQNESPSTAISLS-------RKTYFKRGDNVRVIKGELRGMVGQITNIDEESQ 382

Query: 152 RVHVEVVIFGRV----TPVELAYNQVEK 175
                + +  +     TP++   NQ++K
Sbjct: 383 ----VITMLPKSNDINTPLQFTSNQLQK 406


>gi|12053565|emb|CAC20137.1| Actx protein [Escherichia coli]
 gi|324110940|gb|EGC04930.1| transcription termination proteinusG [Escherichia fergusonii B253]
          Length = 163

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 3   PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR---KVNSER 58
            +WY++Q   +                  L+ L      P       R  +         
Sbjct: 1   MKWYVLQFTTTRF----------AAVFKHLERLNFSYYCPMATEKYRRPDKQLSYRERLT 50

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
             FPGY+ I+A   +    TI   P    F+  G  P  V D E+ ++  
Sbjct: 51  PLFPGYLFIQADFDEVHTTTITGLPHTQRFIAFGGEPLAVPDDEVCNVQK 100


>gi|14520546|ref|NP_126021.1| 50S ribosomal protein L24P [Pyrococcus abyssi GE5]
 gi|13124478|sp|Q9V1U7|RL24_PYRAB RecName: Full=50S ribosomal protein L24P
 gi|5457762|emb|CAB49252.1| rpl24P LSU ribosomal protein L24P [Pyrococcus abyssi GE5]
          Length = 121

 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V +  G F    G V  VD ++ R++VE
Sbjct: 45  PVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVE 79


>gi|55742464|ref|NP_001007208.1| G patch domain and KOW motifs-containing protein [Danio rerio]
 gi|82108178|sp|Q90X38|GPKOW_DANRE RecName: Full=G patch domain and KOW motifs-containing protein;
           AltName: Full=Protein T54-like
 gi|26984453|emb|CAD10081.2| novel protein similar to human T54 protein [Danio rerio]
          Length = 506

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +   ++    G  V V  G      G ++ VD +  RV V++ I G+   +
Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294


>gi|169145960|emb|CAQ15577.1| T54 protein-like [Danio rerio]
          Length = 506

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +   ++    G  V V  G      G ++ VD +  RV V++ I G+   +
Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294


>gi|255008110|ref|ZP_05280236.1| putative LPS biosynthesis related transcriptional regulatory
           protein [Bacteroides fragilis 3_1_12]
 gi|313145828|ref|ZP_07808021.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134595|gb|EFR51955.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 172

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M+ +   W+  +   + E     ++           L  E  +P++ V+   K R+   E
Sbjct: 1   MSEQQEYWFAARTKKDQEFAIRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQ 115
                  + ++         T  D   +        +   +  ++       V       
Sbjct: 52  VPVIKNLIFVRTTKERAWSITKDDHVPLFYMKDLYTHTLLIVPNKQMEDFKFVMDLAPEN 111

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                +   VG +V V  G F    G + ++    +R +V + I G
Sbjct: 112 VTFDDLPLTVGTKVQVVKGEFCGIEGELSSL---ANRTYVVIRIHG 154


>gi|291241653|ref|XP_002740721.1| PREDICTED: suppressor of Ty 5 homolog [Saccoglossus kowalevskii]
          Length = 1095

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +G+ V + +GPF  + GIVK+  E  +RV +
Sbjct: 718 IGQTVRIREGPFKGYIGIVKDATESTARVEL 748


>gi|307354334|ref|YP_003895385.1| 50S ribosomal protein L24 [Methanoplanus petrolearius DSM 11571]
 gi|307157567|gb|ADN36947.1| ribosomal protein L24 [Methanoplanus petrolearius DSM 11571]
          Length = 121

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           VG+ V V  G F    G+V  VD EK  V V
Sbjct: 49  VGDTVKVQRGDFRGEEGVVDGVDTEKGTVIV 79


>gi|71661514|ref|XP_817777.1| transcription initiation protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70882989|gb|EAN95926.1| transcription initiation protein, putative [Trypanosoma cruzi]
          Length = 720

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 22/170 (12%)

Query: 21  SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP-----GYV------LIKA 69
            +   +    + + VT   +P E  V     +        F       YV          
Sbjct: 309 DLAQVVEVHPISNQVTVKVVPREDFVGKPFKKIEIRLPPRFFVPTLAAYVQERGDFYRWG 368

Query: 70  VMT-DKVYHTIKDTPKVIGFLGTGENPSPVTD------SEIEHIMNQVEAAVQRPVSSVF 122
            +T DK  + +K     +   GT      V +      ++ E +   V            
Sbjct: 369 DLTFDKEGYLLKTVSSRMVISGTKMKNPTVEEIALFFNNDRERVREAVARFASVGHRGAD 428

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR----VTPVEL 168
             +G  V V  G      G ++N+  + + V +   + GR       VEL
Sbjct: 429 LRIGNTVRVVSGQLRETVGTIENIFLDTNTVSLSCPVPGRKEPIKVRVEL 478


>gi|325297433|ref|YP_004257350.1| putative transcriptional regulator Updx-like protein [Bacteroides
           salanitronis DSM 18170]
 gi|324316986|gb|ADY34877.1| putative transcriptional regulator Updx-like protein [Bacteroides
           salanitronis DSM 18170]
          Length = 203

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 7/144 (4%)

Query: 37  EITIPSERVVSVRKGRKVNSERRFFPGYVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENP 95
           ++  P    +  R G++   E  F    + +    +         DT +     G  + P
Sbjct: 59  QVFTPMVWKLVTRNGKRYREEVPFMQDLLFVHDTRLAVDPIVEKYDTVQYRYVRGGYKIP 118

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK- 150
             V ++++E  ++ VE+       +        +G +V +  GP   + G ++ +   + 
Sbjct: 119 MTVREADMERFIHAVESTENTRYYAPEEISSDMIGRKVRIVGGPLDGYEGNLQKMQGART 178

Query: 151 SRVHVEV-VIFGRVTPVELAYNQV 173
            R+ VE+  +      V+  Y Q+
Sbjct: 179 KRMFVELPNLLAAAVEVQPEYIQL 202


>gi|220939465|emb|CAX15715.1| G patch domain and KOW motifs [Mus musculus]
          Length = 189

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
             G  V V  GP+    G V+ +D +  R  V + +  R+  V
Sbjct: 8   MHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 50


>gi|47229182|emb|CAG03934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 493

 Score = 38.9 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
           LG G + S + D E        +   +R     +    G  V V  GP     G ++ V 
Sbjct: 206 LGLGADRSLIKDLEPSKRKQPPKPGDERTQEEELVMAPGSCVLVESGPHKDKYGKIEGVY 265

Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            + +RV V++ I G+   V+++   V  +
Sbjct: 266 PDNARVVVKLAIGGK--TVDISQYIVRLV 292


>gi|302823823|ref|XP_002993560.1| hypothetical protein SELMODRAFT_449156 [Selaginella moellendorffii]
 gi|300138627|gb|EFJ05389.1| hypothetical protein SELMODRAFT_449156 [Selaginella moellendorffii]
          Length = 931

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 37  EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96
           ++ +  + +V   +     ++   F  + LI             +        GT +   
Sbjct: 415 DVRVFRDSIVETSEVTCGLTKLGEFELHDLIALDPMTVGVIVRIEADGCQVLKGTPDKQE 474

Query: 97  PV---TDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
            +        + + N++     R  + V   V + V V  GPF    G+V++++ 
Sbjct: 475 VITVKQRDLRKRLYNKMINTQDRDTNVVS--VKDIVRVVSGPFKGKQGVVEHINR 527


>gi|219850845|ref|YP_002465277.1| NusG antitermination factor [Methanosphaerula palustris E1-9c]
 gi|219545104|gb|ACL15554.1| NusG antitermination factor [Methanosphaerula palustris E1-9c]
          Length = 162

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 32/153 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + ++  S  E+   ++I   + ++ +   V  +  P                 +   GYV
Sbjct: 16  FAIKTTSKQERTVADNIKKAVDQTDI--KVYSVMAP-----------------KELQGYV 56

Query: 66  LIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           L++     +++   I+  P     L                 + +V   +          
Sbjct: 57  LVETPEKLNRMEQLIERVPHARAILRGET------------ALAEVAHFLVPKPVVSGIV 104

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            G  + +  GPF     IVK VD  K  + VE+
Sbjct: 105 EGTIIELIAGPFKGEKAIVKRVDSGKEEITVEL 137


>gi|163803075|ref|ZP_02196960.1| hypothetical protein 1103602000564_AND4_05414 [Vibrio sp. AND4]
 gi|159173153|gb|EDP57983.1| hypothetical protein AND4_05414 [Vibrio sp. AND4]
          Length = 152

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV---SVRKGRKVNSERR 59
             WY+V            S    L R  L+    E+  P          R G+     + 
Sbjct: 2   KNWYLVYC------NVKNSRRDVLIRF-LNSFGVEVFNPIMTYYKARKDRPGKFRKQTKS 54

Query: 60  FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107
            F  Y+ I+   T   +    +   +  FL +    + + +  IE++ 
Sbjct: 55  LFSNYMFIQFDCTKFSFSKFDNIEGISYFLRSSGQIATIPEPLIENLR 102


>gi|317038158|ref|XP_001401698.2| transcription elongation factor SPT5 [Aspergillus niger CBS 513.88]
          Length = 1053

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  +  E++ V SI  R+              P      ++             GY+ +
Sbjct: 225 VRCKAGKEREVVFSIQKRIEER-----------PPGSRNPIKIMSAFERGG-AMAGYIYV 272

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 273 EARRQADVMDALQDMTNVY----PRTKMILVPVREMPDLL--------RVQKSEELMPGG 320

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ V+     V V +
Sbjct: 321 WVRIKRGKYQGDLAQIEEVETNGLAVTVRL 350


>gi|134058612|emb|CAK38596.1| unnamed protein product [Aspergillus niger]
          Length = 1052

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  +  E++ V SI  R+              P      ++             GY+ +
Sbjct: 224 VRCKAGKEREVVFSIQKRIEER-----------PPGSRNPIKIMSAFERGG-AMAGYIYV 271

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A     V   ++D   V            V   E+  ++        R   S     G 
Sbjct: 272 EARRQADVMDALQDMTNVY----PRTKMILVPVREMPDLL--------RVQKSEELMPGG 319

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G +      ++ V+     V V +
Sbjct: 320 WVRIKRGKYQGDLAQIEEVETNGLAVTVRL 349


>gi|224539520|ref|ZP_03680059.1| hypothetical protein BACCELL_04425 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518858|gb|EEF87963.1| hypothetical protein BACCELL_04425 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 125

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116
                 + + A  ++      + +               ++DSE++  +           
Sbjct: 2   PVVHNLLFVHARPSEVKRIKSQVSYLQYITDTRSGQKIIISDSEMQRFIAVAGTYNDHLM 61

Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
                 +    G +V ++ G F    GI   V   + R  V + I G
Sbjct: 62  YFQPDELNLSKGTKVRITGGDFEGQEGIFVKVKGARDR-RVVIEIQG 107


>gi|150025396|ref|YP_001296222.1| 50S ribosomal protein L24 [Flavobacterium psychrophilum JIP02/86]
 gi|166222052|sp|A6GZ88|RL24_FLAPJ RecName: Full=50S ribosomal protein L24
 gi|149771937|emb|CAL43411.1| 50S ribosomal protein L24 [Flavobacterium psychrophilum JIP02/86]
          Length = 104

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
           +  +  + G+ V V  G      G V  VD EK++  VE V +  + T 
Sbjct: 1   MIKLKIKTGDIVRVIAGDHKGAEGKVVKVDREKNKAIVEGVNMVSKHTK 49


>gi|332158012|ref|YP_004423291.1| 50S ribosomal protein L24P [Pyrococcus sp. NA2]
 gi|331033475|gb|AEC51287.1| 50S ribosomal protein L24P [Pyrococcus sp. NA2]
          Length = 121

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V +  G F    G V  VD ++ R++VE
Sbjct: 45  PVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVE 79


>gi|238898528|ref|YP_002924209.1| putative NusG-type transcription antiterminator [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466287|gb|ACQ68061.1| putative NusG-type transcription antiterminator [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 154

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 9/118 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SER 58
           M  +WY+    S C            ++  L  +      PS +    R  RK       
Sbjct: 1   MEKKWYLTCHKSGCSNLYK-------AQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIE 53

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
             F GY+             I+    +   +       P+ ++ ++ IM         
Sbjct: 54  PLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMRFPLCMNDE 111


>gi|225457789|ref|XP_002265283.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1022

 Score = 38.5 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           +G  + +  GPF  + G V +V+     V VE+    ++  V +  NQ+
Sbjct: 690 IGSTIKIRQGPFKGYRGRVVDVNG--QSVRVELE--SQMKVVTVDRNQI 734


>gi|302142757|emb|CBI19960.3| unnamed protein product [Vitis vinifera]
          Length = 1034

 Score = 38.5 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           +G  + +  GPF  + G V +V+     V VE+    ++  V +  NQ+
Sbjct: 702 IGSTIKIRQGPFKGYRGRVVDVNG--QSVRVELE--SQMKVVTVDRNQI 746


>gi|67540918|ref|XP_664233.1| hypothetical protein AN6629.2 [Aspergillus nidulans FGSC A4]
 gi|40738968|gb|EAA58158.1| hypothetical protein AN6629.2 [Aspergillus nidulans FGSC A4]
 gi|259480209|tpe|CBF71131.1| TPA: ribosomal protein L14 (AFU_orthologue; AFUA_6G03830)
           [Aspergillus nidulans FGSC A4]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 3/91 (3%)

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
              + D V               T +N       E+      +     +       EVG 
Sbjct: 28  NTEIRDPVSRVRTCAFWTTSTTPTFDNNFHHPSPELSTEAFAMADIDVKIAQWKLVEVGR 87

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            V +  GPF      +  + + K    V V 
Sbjct: 88  VVLIRRGPFTGKLATIVEIVDHK---RVLVD 115


>gi|319952185|ref|YP_004163452.1| lsu ribosomal protein l24p [Cellulophaga algicola DSM 14237]
 gi|319420845|gb|ADV47954.1| LSU ribosomal protein L24P [Cellulophaga algicola DSM 14237]
          Length = 104

 Score = 38.5 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  +VG+ V +  G      G +  +D +K++  VE
Sbjct: 1   MKKLKIKVGDIVRIVAGDHKGVEGKIMKIDFDKNKAIVE 39


>gi|150397106|ref|YP_001327573.1| hypothetical protein Smed_1904 [Sinorhizobium medicae WSM419]
 gi|150028621|gb|ABR60738.1| hypothetical protein Smed_1904 [Sinorhizobium medicae WSM419]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 20/166 (12%)

Query: 1   MTP-RWYIVQVYSNCEK--KAVESI-----GGRLSRSGLDHLVTEITIPSERVVSVRKGR 52
           M+  RWY ++     ++     E +        +          +I +PS     ++  R
Sbjct: 1   MSRSRWYAIRTAPGYQRMAAVDERLPESRRMESIIERNCRKDGFDIFMPSFYK-ELKHHR 59

Query: 53  KVNSERRFFPGYV-LIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHI 106
                 + FP  V      +    +  ++     + FL          PS   ++     
Sbjct: 60  TNEIIEKRFPFLVGYAFVNLPRLNFEELRRVDGAVCFLRGANYGPLEFPSATIEALYFAE 119

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPF-----ASFNGIVKNVD 147
             + +A +         E  E++    G             V  VD
Sbjct: 120 HERRQAFLYEQHCRKENERHEQIQHLRGQLRKILPKGRKARVSMVD 165


>gi|45358973|ref|NP_988530.1| 50S ribosomal protein L24P [Methanococcus maripaludis S2]
 gi|74579566|sp|Q6LXE2|RL24_METMP RecName: Full=50S ribosomal protein L24P
 gi|45047839|emb|CAF30966.1| LSU ribosomal protein L24P [Methanococcus maripaludis S2]
          Length = 119

 Score = 38.5 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +S+  + G+ V V  G F    G V  VD    ++ VE
Sbjct: 43  NSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVE 80


>gi|254500965|ref|ZP_05113116.1| Transcription termination factor nusG domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437036|gb|EEE43715.1| Transcription termination factor nusG domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 14/165 (8%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           W ++     CE +A + + G    + L    +        R   V+  +     R  FP 
Sbjct: 29  WVVIHTNPKCETRARDGLLGAGLLAFLPMEQIERR---HGRGRKVKPAQTYTVIRPMFPR 85

Query: 64  YVLIKAVMTD----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119
           Y+     +                 V+ F  TG          I+ +         RPV+
Sbjct: 86  YLFAGMDVKKGQSVDQIRACDGVKGVLSFDKTGAVARVAVSDLIKILELSHGTFEGRPVA 145

Query: 120 SVFF------EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
                     + G  V +  G +   +  V   D  K RV  E+ 
Sbjct: 146 DGQMADVARLKEGAVVKLVKGSWCGQDLTVTGYDAAKERVIGELT 190


>gi|134045214|ref|YP_001096700.1| 50S ribosomal protein L24P [Methanococcus maripaludis C5]
 gi|150402579|ref|YP_001329873.1| 50S ribosomal protein L24P [Methanococcus maripaludis C7]
 gi|166222070|sp|A4FWB0|RL24_METM5 RecName: Full=50S ribosomal protein L24P
 gi|166222071|sp|A6VGZ6|RL24_METM7 RecName: Full=50S ribosomal protein L24P
 gi|132662839|gb|ABO34485.1| LSU ribosomal protein L24P [Methanococcus maripaludis C5]
 gi|150033609|gb|ABR65722.1| ribosomal protein L24 [Methanococcus maripaludis C7]
          Length = 119

 Score = 38.5 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +S+  + G+ V V  G F    G V  VD    ++ VE
Sbjct: 43  NSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVE 80


>gi|154340088|ref|XP_001566001.1| transcription elongation regulator-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063319|emb|CAM45525.1| transcription elongation regulator-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 693

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 22/159 (13%)

Query: 34  LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80
            +T   +P E  V     +        F               YV       D+  + +K
Sbjct: 294 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVDVREMENSYVWGDLHF-DREGYLLK 352

Query: 81  DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV-----GERVCVSDGP 135
                +   G       + +    +   + +       +    +V     G+ V V+ G 
Sbjct: 353 TVSTRMVVSGAQLEQPSIEELARFYNDQREKVERALRAAEAAAQVPPISIGDSVRVTTGQ 412

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  G+V+NV    +   +   + GRV P+++   QVE
Sbjct: 413 LRNTIGVVENVFTNTNTAVLTCTVPGRVQPIKV---QVE 448


>gi|226204|prf||1501256A ribosomal protein L16
          Length = 118

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
              +  +P+ +   +      +   +    +V    G+ V V  G FA   G V NVD +
Sbjct: 8   RKSQRRAPLHERRKQVRTLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLD 67

Query: 150 KSRVHVE 156
           K+ +HVE
Sbjct: 68  KAVIHVE 74


>gi|315425861|dbj|BAJ47514.1| large subunit ribosomal protein L24 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 119

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           V    G+ V V  G F +  G VK VD ++   +VE V I
Sbjct: 42  VRLRQGDTVKVIKGTFKNIEGKVKRVDVKRQMAYVENVSI 81


>gi|307319523|ref|ZP_07598950.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306894895|gb|EFN25654.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 206

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 45/172 (26%), Gaps = 30/172 (17%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--------TEITIPSERV--VSVRKGRK 53
           RWY ++      ++   +         ++ ++         +I +PS        R    
Sbjct: 5   RWYAIRTAPGY-QRMAAADERLPETRRMESIIERNCRKDGFDIFMPSFYKELKHHRTNEI 63

Query: 54  VNSERRFFPGYVLIK--------AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105
           +     F  GY  +             D +   ++ +               +  +E E 
Sbjct: 64  IQKRFPFLVGYAFVNLPRLNFEDLRRVDGIICLLRGSIGYGPLEFPDGMIEDLYFAEHER 123

Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
               +     R  +    ++               G ++ +  +  +  V +
Sbjct: 124 RQAFLYEQHCRKENERHEQI-----------QHLRGQLRKILPKGRKARVSM 164


>gi|150401817|ref|YP_001325583.1| 50S ribosomal protein L24P [Methanococcus aeolicus Nankai-3]
 gi|166222068|sp|A6UWU9|RL24_META3 RecName: Full=50S ribosomal protein L24P
 gi|150014520|gb|ABR56971.1| ribosomal protein L24 [Methanococcus aeolicus Nankai-3]
          Length = 119

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             + G+ V +  G F    G V  VD +  +++VE
Sbjct: 46  PVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIYVE 80


>gi|150399472|ref|YP_001323239.1| 50S ribosomal protein L24P [Methanococcus vannielii SB]
 gi|132817|sp|P14034|RL24_METVA RecName: Full=50S ribosomal protein L24P
 gi|166222074|sp|A6UQ55|RL24_METVS RecName: Full=50S ribosomal protein L24P
 gi|44759|emb|CAA34691.1| unnamed protein product [Methanococcus vannielii]
 gi|150012175|gb|ABR54627.1| ribosomal protein L24 [Methanococcus vannielii SB]
          Length = 119

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             + G+ V V  G F    G V  V+    ++ VE
Sbjct: 46  PVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVE 80


>gi|302780661|ref|XP_002972105.1| hypothetical protein SELMODRAFT_96727 [Selaginella moellendorffii]
 gi|300160404|gb|EFJ27022.1| hypothetical protein SELMODRAFT_96727 [Selaginella moellendorffii]
          Length = 1003

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV---TDSEIEHIMNQVEAAVQRP 117
           F  + LI             +        GT +    +        + + N++     R 
Sbjct: 516 FELHDLIALDPMTVGVIVRIEADGCQVLKGTPDKQEVITVKQRDLRKRLYNKMINTQDRD 575

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148
            + V   V + V V  GPF    G+V++++ 
Sbjct: 576 TNVVS--VKDIVRVVSGPFKGKQGVVEHINR 604


>gi|297623285|ref|YP_003704719.1| 50S ribosomal protein L24 [Truepera radiovictrix DSM 17093]
 gi|297164465|gb|ADI14176.1| ribosomal protein L24 [Truepera radiovictrix DSM 17093]
          Length = 111

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            + +  + G+RV V  G      G++     EK+RV VE
Sbjct: 7   RTRIRLKKGDRVRVIAGAHKGAEGVIIATLPEKNRVVVE 45


>gi|20094655|ref|NP_614502.1| 50S ribosomal protein L24P [Methanopyrus kandleri AV19]
 gi|46397695|sp|Q8TW19|RL24_METKA RecName: Full=50S ribosomal protein L24P
 gi|19887816|gb|AAM02432.1| Ribosomal protein L24 [Methanopyrus kandleri AV19]
          Length = 149

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V +  G F    G V  VD ++ R++VE
Sbjct: 50  GDMVRIMRGDFKGHEGEVVEVDLKRLRIYVE 80


>gi|326334534|ref|ZP_08200745.1| 50S ribosomal protein L24 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693303|gb|EGD35231.1| 50S ribosomal protein L24 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 105

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V V  G      G V  VD EK+R  VE
Sbjct: 2   MIKLKIKTGDTVQVIAGDHKGEKGKVLKVDREKNRAIVE 40


>gi|298675983|ref|YP_003727733.1| NusG antitermination factor [Methanohalobium evestigatum Z-7303]
 gi|298288971|gb|ADI74937.1| NusG antitermination factor [Methanohalobium evestigatum Z-7303]
          Length = 157

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 31/152 (20%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           ++V+  +N E+              +   VT            +   +         GYV
Sbjct: 12  FVVKTTANQERSVA----------NMVAQVTR---------KDKLDIRAVIAPDELKGYV 52

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L++A+ +  V   I+  P     +    +   +T                   +      
Sbjct: 53  LVEALDSATVEQAIQRVPHAKALVKGQSSIDEITHFLTPK------------PTVTGITE 100

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  + ++ GPF      VK VDE    + VE+
Sbjct: 101 GTIIEITSGPFKGEKARVKRVDEGHEEITVEL 132


>gi|242398291|ref|YP_002993715.1| 50S ribosomal protein L24P [Thermococcus sibiricus MM 739]
 gi|242264684|gb|ACS89366.1| 50S ribosomal protein L24P [Thermococcus sibiricus MM 739]
          Length = 120

 Score = 38.1 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G++V V  G F    G V  VD ++ RVHVE
Sbjct: 49  GDKVKVLRGDFKGHEGKVVEVDLKRYRVHVE 79


>gi|237710980|ref|ZP_04541461.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727277|ref|ZP_04557758.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750569|ref|ZP_06086632.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229434133|gb|EEO44210.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229454824|gb|EEO60545.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237465|gb|EEZ22915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 181

 Score = 38.1 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 14/162 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--ITIPSERVVSVRKGRKVNSERRF 60
             W+ ++V      K   +I   L +  +   +    + +  +        + V +   F
Sbjct: 9   KHWFALKV---FYNKVF-AIEELLLKKKIKCYIPCETVKVLKQDGTKKNVRKPVINSLLF 64

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
           F     I     +               +   + P  + + E+   M    +  +     
Sbjct: 65  FHSETYIA---KEIQKILTDKVILYTRQIDFKKIPLAIPEREMNIFMLVTSSGEKGLEYF 121

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              +  F  G+ V V DG F    G +  + +   R+ + V 
Sbjct: 122 DTDNPKFYQGDHVKVIDGTFKGAEGYICRIKKNH-RLIITVH 162


>gi|10120936|pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From
           Haloarcula Marismortui At 2.4 Angstrom Resolution
 gi|14278051|pdb|1GIY|U Chain U, Crystal Structure Of The Ribosome At 5.5 A Resolution.
           This File, 1giy, Contains The 50s Ribosome Subunit. The
           30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
           In The File 1gix
 gi|15825961|pdb|1JJ2|S Chain S, Fully Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution
 gi|20151006|pdb|1KQS|S Chain S, The Haloarcula Marismortui 50s Complexed With A
           Pretranslocational Intermediate In Protein Synthesis
 gi|22218940|pdb|1K8A|U Chain U, Co-Crystal Structure Of Carbomycin A Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22218974|pdb|1K9M|U Chain U, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
           Subunit Of Haloarcula Marismortui
 gi|22219017|pdb|1KD1|U Chain U, Co-Crystal Structure Of Spiramycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22219344|pdb|1M1K|U Chain U, Co-Crystal Structure Of Azithromycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|24159039|pdb|1M90|U Chain U, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
           Sparsomycin Bound To The 50s Ribosomal Subunit
 gi|28373737|pdb|1ML5|UU Chain u, Structure Of The E. Coli Ribosomal Termination Complex
           With Release Factor 2
 gi|34811136|pdb|1K73|U Chain U, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|34811166|pdb|1KC8|U Chain U, Co-Crystal Structure Of Blasticidin S Bound To The 50s
           Ribosomal Subunit
 gi|34811205|pdb|1N8R|U Chain U, Structure Of Large Ribosomal Subunit In Complex With
           Virginiamycin M
 gi|34811235|pdb|1NJI|U Chain U, Structure Of Chloramphenicol Bound To The 50s Ribosomal
           Subunit
 gi|37927919|pdb|1Q7Y|U Chain U, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl
           Transferase Center Of The 50s Ribosomal Subunit
 gi|37927954|pdb|1Q81|U Chain U, Crystal Structure Of Minihelix With 3' Puromycin Bound To
           A- Site Of The 50s Ribosomal Subunit.
 gi|37927990|pdb|1Q82|U Chain U, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
           The 50s Ribosomal Subunit
 gi|37928026|pdb|1Q86|U Chain U, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
           Simultaneously At Half Occupancy To Both The A-Site And
           P- Site Of The The 50s Ribosomal Subunit.
 gi|39654691|pdb|1QVF|S Chain S, Structure Of A Deacylated Trna Minihelix Bound To The E
           Site Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|39654724|pdb|1QVG|S Chain S, Structure Of Cca Oligonucleotide Bound To The Trna Binding
           Sites Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|55670554|pdb|1W2B|S Chain S, Trigger Factor Ribosome Binding Domain In Complex With 50s
 gi|66361037|pdb|1YL3|U Chain U, Crystal Structure Of 70s Ribosome With Thrs Operator And
           Trnas. Large Subunit. The Coordinates For The Small
           Subunit Are In The Pdb Entry 1yl4.
 gi|88192274|pdb|2B66|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of Release
           Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
           File Contains The 50s Subunit From A Crystal Structure
           Of Release Factor Rf1, Trnas And Mrna Bound To The
           Ribosome And Is Described In Remark 400
 gi|88192337|pdb|2B9N|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of Release
           Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
           File Contains The 50s Subunit From A Crystal Structure
           Of Release Factor Rf1, Trnas And Mrna Bound To The
           Ribosome And Is Described In Remark 400.
 gi|88192392|pdb|2B9P|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of The
           Ribosome In Complex With Trnas And Mrna With A Stop
           Codon In The A-Site. This File Contains The 50s Subunit
           From A Crystal Structure Of The Ribosome In Complex With
           Trnas And Mrna With A Stop Codon In The A-Site And Is
           Described In Remark 400.
 gi|228311930|pdb|3CXC|S Chain S, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
           To The 50s Ribosomal Subunit Of H. Marismortui
 gi|228312161|pdb|3G4S|T Chain T, Co-Crystal Structure Of Tiamulin Bound To The Large
           Ribosomal Subunit
 gi|228312217|pdb|3G6E|T Chain T, Co-Crystal Structure Of Homoharringtonine Bound To The
           Large Ribosomal Subunit
 gi|228312253|pdb|3G71|T Chain T, Co-Crystal Structure Of Bruceantin Bound To The Large
           Ribosomal Subunit
          Length = 119

 Score = 38.1 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             +V    G+ V V  G FA   G V NVD +K+ +HVE
Sbjct: 37  QRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 75


>gi|307354264|ref|YP_003895315.1| NusG antitermination factor [Methanoplanus petrolearius DSM 11571]
 gi|307157497|gb|ADN36877.1| NusG antitermination factor [Methanoplanus petrolearius DSM 11571]
          Length = 158

 Score = 38.1 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 29/152 (19%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++  +  E+  V++I        L+       +       ++             GYV
Sbjct: 11  YAIKTTAKQERTVVDNIIK-----ALEDHDEINVVAVMAPDELK-------------GYV 52

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
           L+++         +++       +  GE      +             ++        + 
Sbjct: 53  LVESPDPIARIEQLREMVPNARTVVKGETSFHEVEH-----------FLEPKPVVSGIDE 101

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  GPF     IVK VD  K  + VE+
Sbjct: 102 GTIVELIAGPFKGEKAIVKRVDTSKEEITVEL 133


>gi|223935505|ref|ZP_03627422.1| NusG antitermination factor [bacterium Ellin514]
 gi|223895915|gb|EEF62359.1| NusG antitermination factor [bacterium Ellin514]
          Length = 120

 Score = 38.1 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 2   TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           +P WY  +     E  A  ++    +         E+  P  RV    +   +      F
Sbjct: 5   SPAWYCARTKPKHEHIAAANLLRHAN--------VEVFNPRLRVEKATRRGVIRVSEPLF 56

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115
           P Y+ ++ V+ +K+    +    +   +        ++DS +  +    +   +
Sbjct: 57  PCYIFVRCVIEEKLNDI-RYANGISTIVHFANRIPHISDSVVVELQEHFKEMRE 109


>gi|113197964|gb|AAI21739.1| T54l protein [Danio rerio]
          Length = 339

 Score = 38.1 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162
               +   ++    G  V V  G      G ++ VD +  RV V++ I G+
Sbjct: 240 DEKGKEDEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGK 290


>gi|323141745|ref|ZP_08076617.1| TonB-dependent receptor plug domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413782|gb|EFY04629.1| TonB-dependent receptor plug domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 642

 Score = 38.1 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 33/139 (23%), Gaps = 2/139 (1%)

Query: 22  IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKD 81
           I  ++    +      +                 +  R F    L          +    
Sbjct: 393 IREQIIEDMVKDQKVFLPQFQALYKVEDNSSWYMNIGRAFQMPALSDTFKKSGAMYQQVS 452

Query: 82  TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA--SF 139
              +    G          ++       +     + +     E G+ + V+ G F    F
Sbjct: 453 GKNLKPQDGWNYETGYKIINDNNSWKFSLYYMDFKNMFGWEKENGQDIRVNKGKFKNVGF 512

Query: 140 NGIVKNVDEEKSRVHVEVV 158
                ++  +K + +V   
Sbjct: 513 EADYTSILSDKFKANVGFS 531


>gi|13124815|sp|O59429|RL24_PYRHO RecName: Full=50S ribosomal protein L24P
          Length = 121

 Score = 38.1 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V +  G F  + G V  VD ++ R++VE
Sbjct: 45  PVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVE 79


>gi|150003289|ref|YP_001298033.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|150004094|ref|YP_001298838.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|149931713|gb|ABR38411.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|149932518|gb|ABR39216.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482]
          Length = 155

 Score = 38.1 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90
           +     E  IP E  +  R G K    R      +  ++ +   +    + T KVI +  
Sbjct: 1   MKKDKIETYIPCEETLMERNGIKKKLRRPVINSLMFFRSTVCRALEVQRQFTNKVILYTR 60

Query: 91  TGEN---PSPVTDSEIEHIMNQVEAAVQRPVS----SVFFEVGERVCVSDGPFASFNGIV 143
                  P  + D E+   M    +  Q        +  F+ GERV V DG F    G++
Sbjct: 61  QKGLKRLPLAIPDREMNIFMLVTSSGEQGMEYFGEDNSKFQQGERVRVIDGKFKGAEGVI 120

Query: 144 KNVDEEKSRVHVEV 157
             +  +  R+ V V
Sbjct: 121 CRI-RKNRRLVVTV 133


>gi|221128905|ref|XP_002156442.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 395

 Score = 38.1 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 29/55 (52%)

Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
            + +    + +   +S+ +  G  V + +GP    +G + +VDE+ +R+ V++ I
Sbjct: 229 RVRHIKGLSEEVKDNSIGYFPGCYVYIQNGPHKDLSGKIISVDEDTTRISVQLRI 283


>gi|53713877|ref|YP_099869.1| putative transcriptional regulatory protein UpxY-like protein
           [Bacteroides fragilis YCH46]
 gi|60682085|ref|YP_212229.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|253567131|ref|ZP_04844582.1| UpaY [Bacteroides sp. 3_2_5]
 gi|255009543|ref|ZP_05281669.1| putative transcriptional regulatory protein [Bacteroides fragilis
           3_1_12]
 gi|265764220|ref|ZP_06092788.1| UpaY [Bacteroides sp. 2_1_16]
 gi|313147318|ref|ZP_07809511.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|52216742|dbj|BAD49335.1| putative transcriptional regulatory protein UpxY homolog
           [Bacteroides fragilis YCH46]
 gi|60493519|emb|CAH08306.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|251944255|gb|EES84764.1| UpaY [Bacteroides sp. 3_2_5]
 gi|263256828|gb|EEZ28174.1| UpaY [Bacteroides sp. 2_1_16]
 gi|301163555|emb|CBW23106.1| putative transcriptional regulatory protein [Bacteroides fragilis
           638R]
 gi|313136085|gb|EFR53445.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 172

 Score = 38.1 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 1   MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57
           M+ +   W+  +   + E    +++           +  E  +P++ V+   K R+   E
Sbjct: 1   MSQQQEYWFAARTRKDQELTTRDALEK---------IGVEYFLPTQFVIRQLKYRRRRVE 51

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117
                  + + A          +   ++            +   +       V       
Sbjct: 52  VPVIRNLIFVHATKEFACAIANEYGVRLFYMRDFDTKSMLIVPDKQMKDFMFVMNLDPAA 111

Query: 118 VSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161
           V      F VG +V V  G F    G + ++    +R +V + I G
Sbjct: 112 VILNDDCFAVGTKVQVIKGDFCGVEGELASLS---NRTYVTIRIRG 154


>gi|298207738|ref|YP_003715917.1| ribosomal protein L24 [Croceibacter atlanticus HTCC2559]
 gi|83850376|gb|EAP88244.1| ribosomal protein L24 [Croceibacter atlanticus HTCC2559]
          Length = 104

 Score = 38.1 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +  +VG+ V V  G      G ++ V  EK++  VE
Sbjct: 4   KLKIKVGDTVRVIAGASKGQEGKIQKVLVEKNKAIVE 40


>gi|73544587|ref|XP_848188.1| transcription elongation regulator-like protein [Leishmania major
           strain Friedlin]
 gi|321438541|emb|CBZ12300.1| transcription elongation regulator-like protein [Leishmania major
           strain Friedlin]
          Length = 700

 Score = 38.1 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 22/159 (13%)

Query: 34  LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80
            +T   +P E  V     +        F               Y+       D+  + +K
Sbjct: 301 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGVREMENSYIWGDLHF-DREGYLLK 359

Query: 81  DTPKVIGFLGTGENPSPVTD-----SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135
                +   G         +     ++    + +   A +         +G+ V V+ G 
Sbjct: 360 TVSTRMVISGAQLEQPSTEELARFYNDQREKVERALKAAEAAAQVPHISIGDSVRVTTGQ 419

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  G+V+NV    +   +   + GRV P+++   QVE
Sbjct: 420 LRNTIGVVENVFTNTNTAVLTCTVPGRVQPIKV---QVE 455


>gi|308805314|ref|XP_003079969.1| probable transcription elongation factor (ISS) [Ostreococcus tauri]
 gi|116058426|emb|CAL53615.1| probable transcription elongation factor (ISS) [Ostreococcus tauri]
          Length = 926

 Score = 38.1 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            + F  G++V + +G   +  G+V+ VD +  RV V 
Sbjct: 315 DLKFMTGDQVLIVEGDLRNLEGVVERVDPD-GRVVVM 350


>gi|315427719|dbj|BAJ49315.1| large subunit ribosomal protein L24 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 122

 Score = 38.1 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           V    G+ V V  G F +  G VK VD ++   +VE V I
Sbjct: 45  VRLRQGDTVKVIKGTFKNIEGKVKRVDVKRQMAYVENVSI 84


>gi|116623968|ref|YP_826124.1| hypothetical protein Acid_4880 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227130|gb|ABJ85839.1| hypothetical protein Acid_4880 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 104

 Score = 38.1 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           V    G+RV +  G  A   G+V     +  R+ + + +  R   +E+ 
Sbjct: 25  VKPRAGQRVRIKGGALAGVEGVVIGF-RQSLRLILSITLLQRSVLLEID 72


>gi|159905646|ref|YP_001549308.1| 50S ribosomal protein L24P [Methanococcus maripaludis C6]
 gi|159887139|gb|ABX02076.1| ribosomal protein L24 [Methanococcus maripaludis C6]
          Length = 119

 Score = 38.1 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +S+  + G+ V V  G F    G V  VD    ++ VE
Sbjct: 43  NSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVE 80


>gi|320101355|ref|YP_004176947.1| 50S ribosomal protein L24P [Desulfurococcus mucosus DSM 2162]
 gi|319753707|gb|ADV65465.1| LSU ribosomal protein L24P [Desulfurococcus mucosus DSM 2162]
          Length = 133

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V +  G F    G V  VD ++ R+ VE
Sbjct: 50  GDTVRIMRGEFKGHEGKVVEVDLKRVRLFVE 80


>gi|254882990|ref|ZP_05255700.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641831|ref|ZP_07996509.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_40A]
 gi|254835783|gb|EET16092.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386558|gb|EFV67459.1| transcription termination/antitermination factor NusG [Bacteroides
           sp. 3_1_40A]
          Length = 203

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 19/140 (13%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY ++     EKKA + I  ++    +  LV             RK  + +     F  
Sbjct: 69  HWYALRTTYGREKKAYDYIKVKVELLSIVRLVDG----------KRKTVEESRLPNIFFA 118

Query: 64  YV----LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-- 117
           Y     +   V  +     ++   +        E    +  +     +  +  A      
Sbjct: 119 YGTEEEIKSFVYDNVNLPYLRFYYRYFHISKKVEKEPLIVSNNQIESLRIICKADADDII 178

Query: 118 ---VSSVFFEVGERVCVSDG 134
                   F+ G+ V +  G
Sbjct: 179 VSIDEVQKFQKGQAVRILKG 198


>gi|238899397|ref|YP_002925080.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           hemolysin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229467159|gb|ACQ68932.1| transcriptional activator affecting biosynthesis, assembly and
           export of lipopolysaccharide core, F pilin, and
           hemolysin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 149

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 9/118 (7%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SER 58
           M  +WY+    S C            ++  L  +      PS +    R  RK       
Sbjct: 1   MEKKWYLTCHKSGCSNLYK-------AQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIE 53

Query: 59  RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116
             F GY+             I+    +   +       P+ ++ ++ IM         
Sbjct: 54  PLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMRFPLCMNDE 111


>gi|218884475|ref|YP_002428857.1| 50S ribosomal protein L24P [Desulfurococcus kamchatkensis 1221n]
 gi|218766091|gb|ACL11490.1| 50S ribosomal protein L24P [Desulfurococcus kamchatkensis 1221n]
          Length = 133

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
           G+ V +  G F    G V  VD    RV V + 
Sbjct: 50  GDTVRIMRGEFKGHEGKVVEVDL--KRVRVFIE 80


>gi|55378374|ref|YP_136224.1| 50S ribosomal protein L24P [Haloarcula marismortui ATCC 43049]
 gi|132816|sp|P10972|RL24_HALMA RecName: Full=50S ribosomal protein L24P; AltName: Full=Hl15;
           AltName: Full=Hl16; AltName: Full=Hmal24
 gi|50513489|pdb|1S72|T Chain T, Refined Crystal Structure Of The Haloarcula Marismortui
           Large Ribosomal Subunit At 2.4 Angstrom Resolution
 gi|66360803|pdb|1YHQ|T Chain T, Crystal Structure Of Azithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360836|pdb|1YI2|T Chain T, Crystal Structure Of Erythromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360869|pdb|1YIJ|T Chain T, Crystal Structure Of Telithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360902|pdb|1YIT|T Chain T, Crystal Structure Of Virginiamycin M And S Bound To The
           50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360935|pdb|1YJ9|T Chain T, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
           Haloarcula Marismortui Containing A Three Residue
           Deletion In L22
 gi|66360968|pdb|1YJN|T Chain T, Crystal Structure Of Clindamycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66361001|pdb|1YJW|T Chain T, Crystal Structure Of Quinupristin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753144|pdb|1VQ4|T Chain T, The Structure Of The Transition State Analogue "daa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753176|pdb|1VQ5|T Chain T, The Structure Of The Transition State Analogue "raa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753208|pdb|1VQ6|T Chain T, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753240|pdb|1VQ7|T Chain T, The Structure Of The Transition State Analogue "dca" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753271|pdb|1VQ8|T Chain T, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753303|pdb|1VQ9|T Chain T, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753334|pdb|1VQK|T Chain T, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
           The Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753365|pdb|1VQL|T Chain T, The Structure Of The Transition State Analogue "dcsn"
           Bound To The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|83753396|pdb|1VQM|T Chain T, The Structure Of The Transition State Analogue "dan" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753428|pdb|1VQN|T Chain T, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753459|pdb|1VQO|T Chain T, The Structure Of Ccpmn Bound To The Large Ribosomal
           Subunit Haloarcula Marismortui
 gi|83753491|pdb|1VQP|T Chain T, The Structure Of The Transition State Analogue "rap" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|145580191|pdb|2OTJ|T Chain T, 13-Deoxytedanolide Bound To The Large Subunit Of
           Haloarcula Marismortui
 gi|145580222|pdb|2OTL|T Chain T, Girodazole Bound To The Large Subunit Of Haloarcula
           Marismortui
 gi|171848856|pdb|2QA4|T Chain T, A More Complete Structure Of The The L7L12 STALK OF THE
           Haloarcula Marismortui 50s Large Ribosomal Subunit
 gi|188596021|pdb|3CC2|T Chain T, The Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution With Rrna Sequence For The 23s Rrna And
           Genome-Derived Sequences For R-Proteins
 gi|188596052|pdb|3CC4|T Chain T, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|188596083|pdb|3CC7|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2487u
 gi|188596114|pdb|3CCE|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535a
 gi|188596145|pdb|3CCJ|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2534u
 gi|188596176|pdb|3CCL|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535c. Density For Anisomycin Is
           Visible But Not Included In Model.
 gi|188596207|pdb|3CCM|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2611u
 gi|188596238|pdb|3CCQ|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488u
 gi|188596269|pdb|3CCR|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488c. Density For Anisomycin Is
           Visible But Not Included In The Model.
 gi|188596300|pdb|3CCS|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482a
 gi|188596331|pdb|3CCU|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482c
 gi|188596362|pdb|3CCV|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2616a
 gi|188596393|pdb|3CD6|T Chain T, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With
           Cc- Puromycin
 gi|194368723|pdb|3CPW|S Chain S, The Structure Of The Antibiotic Linezolid Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|206581927|pdb|3CMA|T Chain T, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|206581960|pdb|3CME|T Chain T, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|208435513|pdb|2QEX|T Chain T, Negamycin Binds To The Wall Of The Nascent Chain Exit
           Tunnel Of The 50s Ribosomal Subunit
 gi|290790055|pdb|3I55|T Chain T, Co-Crystal Structure Of Mycalamide A Bound To The Large
           Ribosomal Subunit
 gi|290790086|pdb|3I56|T Chain T, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
           Large Ribosomal Subunit
 gi|43615|emb|CAA39019.1| ribosomal protein HmaL24 [Haloarcula marismortui]
 gi|55231099|gb|AAV46518.1| 50S ribosomal protein L24P [Haloarcula marismortui ATCC 43049]
          Length = 120

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    +V    G+ V V  G FA   G V NVD +K+ +HVE
Sbjct: 34  EEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76


>gi|300710386|ref|YP_003736200.1| 50S ribosomal protein L24P [Halalkalicoccus jeotgali B3]
 gi|299124069|gb|ADJ14408.1| 50S ribosomal protein L24P [Halalkalicoccus jeotgali B3]
          Length = 118

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 93  ENPSPVTDSEIEHIMNQVEA---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
            +       E    ++         +         VG+ V +  G FA   G V  VD +
Sbjct: 10  NDAQNAPLHERHKQLHATLDGDLREEHGTRRTRVNVGDTVQIMRGDFAGETGEVVAVDLK 69

Query: 150 KSRVHVE 156
           +  VHVE
Sbjct: 70  RGVVHVE 76


>gi|14591523|ref|NP_143604.1| 50S ribosomal protein L24P [Pyrococcus horikoshii OT3]
 gi|3258199|dbj|BAA30882.1| 124aa long hypothetical 50S ribosomal protein L24 [Pyrococcus
           horikoshii OT3]
          Length = 124

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V +  G F  + G V  VD ++ R++VE
Sbjct: 48  PVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVE 82


>gi|304314265|ref|YP_003849412.1| 50S ribosomal protein L24P [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587724|gb|ADL58099.1| 50S ribosomal protein L24P [Methanothermobacter marburgensis str.
           Marburg]
          Length = 117

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             S+    G++V V  G F    G V+ VD ++ RV+VE
Sbjct: 38  RRSLPVRKGDKVEVLRGDFKGHEGKVEKVDLKRYRVYVE 76


>gi|228472133|ref|ZP_04056899.1| ribosomal protein L24 [Capnocytophaga gingivalis ATCC 33624]
 gi|228276336|gb|EEK15060.1| ribosomal protein L24 [Capnocytophaga gingivalis ATCC 33624]
          Length = 104

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V V  G      G V  VD EK+R  VE
Sbjct: 1   MIKLKIKAGDTVQVIAGDHKGEKGKVLKVDREKNRAIVE 39


>gi|218132117|ref|ZP_03460921.1| hypothetical protein BACEGG_03745 [Bacteroides eggerthii DSM 20697]
 gi|317477643|ref|ZP_07936857.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
 gi|217985686|gb|EEC52027.1| hypothetical protein BACEGG_03745 [Bacteroides eggerthii DSM 20697]
 gi|316906191|gb|EFV27931.1| transcription termination factor nusG [Bacteroides eggerthii
           1_2_48FAA]
          Length = 177

 Score = 37.7 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 6/158 (3%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
             W+  +     E    +S+    S   LD    +  +P+  VVS  K R+  SE     
Sbjct: 6   KYWFAARTRDKQEFAICKSLSRLKSEEHLD---VDYYLPTRIVVSQLKYRRKRSEVPVIR 62

Query: 63  GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             V I+    T      +              +   V D ++   M  ++          
Sbjct: 63  NLVFIRTTKQTACDLSNVYGVRLFYMKDLFTRSMLVVPDKQMSDFMFVMDLNPDGVSFDN 122

Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
               VG+RV V  G      G V   +  ++ V + + 
Sbjct: 123 GSLVVGDRVRVVKGDLTGVEGEVAT-NANRTYVVIRIK 159


>gi|11499498|ref|NP_070739.1| 50S ribosomal protein L24P [Archaeoglobus fulgidus DSM 4304]
 gi|3914715|sp|O28365|RL24_ARCFU RecName: Full=50S ribosomal protein L24P
 gi|2648629|gb|AAB89339.1| LSU ribosomal protein L24P (rpl24P) [Archaeoglobus fulgidus DSM
           4304]
          Length = 120

 Score = 37.7 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +    G++V +  G FA   G V  VD ++ R+ V
Sbjct: 46  IRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITV 80


>gi|167045425|gb|ABZ10080.1| putative KOW motif protein [uncultured marine crenarchaeote
           HF4000_APKG10F15]
          Length = 129

 Score = 37.7 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 29/69 (42%)

Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
           N+++  + +  +     V   V +  GPF      +  +++EK    V ++      PV 
Sbjct: 59  NEIDKYLIKKSTVSELAVENTVEIIAGPFKGMKATITRLEKEKEEATVILLDATYQLPVT 118

Query: 168 LAYNQVEKI 176
           +  N ++ +
Sbjct: 119 VDANYLKLV 127


>gi|57641465|ref|YP_183943.1| 50S ribosomal protein L24P [Thermococcus kodakarensis KOD1]
 gi|73914096|sp|Q5JJF9|RL24_PYRKO RecName: Full=50S ribosomal protein L24P
 gi|57159789|dbj|BAD85719.1| LSU ribosomal protein L24P [Thermococcus kodakarensis KOD1]
          Length = 121

 Score = 37.7 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V V  G F    G V  VD  + R+HVE
Sbjct: 45  PIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVE 79


>gi|319789505|ref|YP_004151138.1| MutS2 family protein [Thermovibrio ammonificans HB-1]
 gi|317114007|gb|ADU96497.1| MutS2 family protein [Thermovibrio ammonificans HB-1]
          Length = 756

 Score = 37.7 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             + G+ V V  G      G V +VD  + R  V++        VE+   Q+ 
Sbjct: 609 EPKPGDTVKVEPG---GRKGKVVSVDAGRKRAKVQIG----AVTVEVKLGQLR 654


>gi|326433915|gb|EGD79485.1| hypothetical protein PTSG_12984 [Salpingoeca sp. ATCC 50818]
          Length = 1092

 Score = 37.7 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     E++A   +  +  ++ +         P      +   ++     R    Y+
Sbjct: 221 WAVRCKPGGEQEAAIKLMRKAMQAAMKGE------PLAIKSVIGYRQQRVVGGR---SYI 271

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A   + V H I    +++     G+    + + E    + +V+         +  + 
Sbjct: 272 YVEAYSREHVKHAIAGIEELVY----GQWTQELVEMEARPALLRVK------KRKINVKP 321

Query: 126 GERVCVSDGPFASFNGIVKNVDE--EKSRVHVEV 157
            + V +  G +A+    V  V+   +  RV V +
Sbjct: 322 NQWVRIKRGIYANDLAKVVRVNATVDPPRVEVHL 355



 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV----- 155
            E+    +        P     F VG+RV V  G   +  G + +++    +V +     
Sbjct: 440 FEMTEDAHVEMELPDEPSLQPAFAVGDRVEVVGGDLKNLTGEILSINASSQQVEIRPDSD 499

Query: 156 EVVIFGRVTPVELAYNQVEK 175
           E+   G +T + L  ++V K
Sbjct: 500 ELKKTG-ITRIPLPISEVRK 518


>gi|196006151|ref|XP_002112942.1| hypothetical protein TRIADDRAFT_56584 [Trichoplax adhaerens]
 gi|190584983|gb|EDV25052.1| hypothetical protein TRIADDRAFT_56584 [Trichoplax adhaerens]
          Length = 501

 Score = 37.7 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           E E   +   AA      S+ F  G  V V  GP A   G V+ +D +  R+ V + I
Sbjct: 225 EPERTSDVCFAAKMVTTISLGFARGVHVMVVAGPHADLYGKVEGIDGDNGRIFVALAI 282


>gi|320585909|gb|EFW98588.1| kow motif domain containing protein [Grosmannia clavigera kw1407]
          Length = 391

 Score = 37.3 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           VG+RV V++GP     G VK +  E   V +
Sbjct: 142 VGDRVVVTEGPLKGAIGAVKELRPEHGTVTL 172


>gi|30680726|ref|NP_192575.2| GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent
           of ribosome / transcription elongation regulator/
           transcription factor [Arabidopsis thaliana]
          Length = 1029

 Score = 37.3 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           G  V +  GPF  + G V  V     RV +E+ I
Sbjct: 704 GTTVKIRLGPFKGYRGPVVEVKGNSVRVELEMKI 737


>gi|261402345|ref|YP_003246569.1| ribosomal protein L24 [Methanocaldococcus vulcanius M7]
 gi|261369338|gb|ACX72087.1| ribosomal protein L24 [Methanocaldococcus vulcanius M7]
          Length = 120

 Score = 37.3 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +++    G+ V +  G F    G V  VD ++ R+HVE
Sbjct: 43  NAIPVRKGDVVRIMRGNFKGLEGEVVKVDLKRYRIHVE 80


>gi|15678045|ref|NP_275159.1| 50S ribosomal protein L24P [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3122709|sp|O26122|RL24_METTH RecName: Full=50S ribosomal protein L24P
 gi|2621042|gb|AAB84515.1| ribosomal protein L26 (E.coli ) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 117

 Score = 37.3 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             S+    G++V +  G F    G V+ VD ++ RV+VE
Sbjct: 38  RRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVE 76


>gi|75207701|sp|Q9STN3|SPT51_ARATH RecName: Full=Putative transcription elongation factor SPT5 homolog
           1
 gi|5731756|emb|CAB52557.1| putative protein [Arabidopsis thaliana]
 gi|7267476|emb|CAB77960.1| putative protein [Arabidopsis thaliana]
          Length = 1054

 Score = 37.3 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           G  V +  GPF  + G V  V     RV +E+ I
Sbjct: 704 GTTVKIRLGPFKGYRGPVVEVKGNSVRVELEMKI 737


>gi|302143191|emb|CBI20486.3| unnamed protein product [Vitis vinifera]
          Length = 236

 Score = 37.3 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 22/68 (32%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
              + E P P+          + +      +  +  +VG+ V +  G      G +  + 
Sbjct: 79  LAKSTEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIF 138

Query: 148 EEKSRVHV 155
              S V V
Sbjct: 139 RHNSTVVV 146


>gi|284162449|ref|YP_003401072.1| ribosomal protein L24 [Archaeoglobus profundus DSM 5631]
 gi|284012446|gb|ADB58399.1| ribosomal protein L24 [Archaeoglobus profundus DSM 5631]
          Length = 120

 Score = 37.3 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +    G++V +  G FA   G V  VD +K R++V
Sbjct: 46  IRIRKGDKVRIMRGEFAGHEGKVVEVDMKKIRIYV 80


>gi|297809015|ref|XP_002872391.1| hypothetical protein ARALYDRAFT_327088 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318228|gb|EFH48650.1| hypothetical protein ARALYDRAFT_327088 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1051

 Score = 37.3 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
           G  V +  GPF  + G V  V     RV +E+ I
Sbjct: 701 GTTVKIRLGPFKGYRGPVVEVKGNSVRVELEMKI 734


>gi|115397871|ref|XP_001214527.1| hypothetical protein ATEG_05349 [Aspergillus terreus NIH2624]
 gi|114192718|gb|EAU34418.1| hypothetical protein ATEG_05349 [Aspergillus terreus NIH2624]
          Length = 1075

 Score = 37.3 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 91  TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
           TG + + +  + + + M                 +G+ V V  GPF    GIVK+  + +
Sbjct: 732 TGPDLTKMNPALMRNGMPGAGGMGPPKTFGRDRMIGKTVMVRKGPFKGLVGIVKDSSDAQ 791

Query: 151 SRVHV-----EVVI 159
           +RV +      V I
Sbjct: 792 ARVELHSKNKLVSI 805


>gi|320035888|gb|EFW17828.1| transcription elongation factor spt5 [Coccidioides posadasii str.
           Silveira]
          Length = 1051

 Score = 37.3 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 24/152 (15%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     E++ V +I  R+               +                    GYV
Sbjct: 232 WAVKCRPGKEREIVFNIMKRIEERHPASRNPIRITSAFERGGT------------MSGYV 279

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            I+A     V   + +   V          + ++  E+  ++        R   S   + 
Sbjct: 280 YIEARKQADVMDALDNLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 327

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  G +      ++ V+     V V +
Sbjct: 328 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 359



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
              VG+ V +  GP+    GIVK  D       VE+    +V PVE
Sbjct: 752 DRTVGKTVTIRKGPYKGLLGIVK--DTTDDIARVELHSVSKVVPVE 795


>gi|303321271|ref|XP_003070630.1| KOW motif containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110326|gb|EER28485.1| KOW motif containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1051

 Score = 37.3 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 24/152 (15%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     E++ V +I  R+               +                    GYV
Sbjct: 232 WAVKCRPGKEREIVFNIMKRIEERHPASRNPIRITSAFERGGT------------MSGYV 279

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            I+A     V   + +   V          + ++  E+  ++        R   S   + 
Sbjct: 280 YIEARKQADVMDALDNLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 327

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  G +      ++ V+     V V +
Sbjct: 328 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 359



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
              VG+ V +  GP+    GIVK  D       VE+    +V PVE
Sbjct: 752 DRTVGKTVTIRKGPYKGLLGIVK--DTTDDIARVELHSVSKVVPVE 795


>gi|218130865|ref|ZP_03459669.1| hypothetical protein BACEGG_02460 [Bacteroides eggerthii DSM 20697]
 gi|217987209|gb|EEC53540.1| hypothetical protein BACEGG_02460 [Bacteroides eggerthii DSM 20697]
          Length = 161

 Score = 37.3 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 31  LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK---AVMTDKVYHTIKDTPKVIG 87
           LD    E  IP      +R  R+V          V I+   A + +   +   + P    
Sbjct: 7   LDKADIENFIPMHYEYIMRNERRVRKLVPAIHNLVFIRSTRACIDEIKNNYALNIPVRYI 66

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE----VGERVCVSDGPFASFNGIV 143
                  P  + D+++   +       +  +     E     G +V ++ G F    G  
Sbjct: 67  MNRETRQPVIIPDAQMRSFILVAGTYDEAVIYVEPEELKLVKGTKVRITGGVFEGAVGEF 126

Query: 144 KNVDEEKSRVHVEVV 158
             +  ++ RV V + 
Sbjct: 127 VRLRHDR-RVVVNIE 140


>gi|156936529|ref|YP_001440444.1| hypothetical protein ESA_pESA2p06575 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534783|gb|ABU79608.1| hypothetical protein ESA_pESA2p06575 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 149

 Score = 37.3 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFF 61
           +WY++   S       + I  R+SR   + L  E+  P    V+ R   +   +     F
Sbjct: 3   KWYVLYCNS-------QDI-QRISRRT-EDLGVEVFCPRYIKVTPRTDCRAVRQEEKPLF 53

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
           P Y+ ++  +      TI   P   GF+  G  P  V +S I  I
Sbjct: 54  PSYLFLRFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 98


>gi|224540174|ref|ZP_03680713.1| hypothetical protein BACCELL_05087 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518208|gb|EEF87313.1| hypothetical protein BACCELL_05087 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 179

 Score = 37.3 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 16/147 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            W+ V+V    E      +              E  IP  R   V+ GR++         
Sbjct: 8   HWFAVRVTYGRELALKAFLDEEK---------IENFIPMRRDYVVKDGRRICKFVPAVHN 58

Query: 64  YVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            V I++     D +         +   +    +   +   +       V    +  V  V
Sbjct: 59  LVFIRSTRKRIDTLKDKAGMNIPIRYIMNREHHLPVIVPDDQMRSFILVAGTYEESVIYV 118

Query: 122 FFEV-----GERVCVSDGPFASFNGIV 143
                    G++V V  G F    G  
Sbjct: 119 EPAELQLVRGQKVRVMGGVFEGAVGEF 145


>gi|194227910|ref|XP_001495277.2| PREDICTED: G patch domain and KOW motifs [Equus caballus]
          Length = 476

 Score = 37.3 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
               +         G  V V  GP     G V+ +D +  R  V + +  RV  +
Sbjct: 230 QEKDKEDQPQGLVPGGAVVVRSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTL 284


>gi|15668644|ref|NP_247442.1| 50S ribosomal protein L24P [Methanocaldococcus jannaschii DSM 2661]
 gi|1710522|sp|P54038|RL24_METJA RecName: Full=50S ribosomal protein L24P
 gi|1591169|gb|AAB98456.1| LSU ribosomal protein L24P (rplX) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 120

 Score = 37.3 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +++    G+ V +  G F    G V  VD ++ R++VE
Sbjct: 43  NAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVE 80


>gi|212694747|ref|ZP_03302875.1| hypothetical protein BACDOR_04279 [Bacteroides dorei DSM 17855]
 gi|212662726|gb|EEB23300.1| hypothetical protein BACDOR_04279 [Bacteroides dorei DSM 17855]
          Length = 198

 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 14/162 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--ITIPSERVVSVRKGRKVNSERRF 60
             W+ ++V      K   +I   L +  +   +    + +  +        + V +   F
Sbjct: 26  KHWFALKV---FYNKVF-AIEELLLKKKIKCYIPCETVKVLKQDGTKKNVRKPVINSLLF 81

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116
           F     I     +               +   + P  + + E+   M    +  +     
Sbjct: 82  FHSETYIA---KEIQKILTDKVILYTRQIDFKKIPLAIPEREMNIFMLVTSSGEKGLEYF 138

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
              +  F  G+ V V DG F    G +  + +   R+ + V 
Sbjct: 139 DTDNPKFYQGDHVKVIDGTFKGAEGYICRIKKNH-RLIITVH 179


>gi|256819993|ref|YP_003141272.1| 50S ribosomal protein L24 [Capnocytophaga ochracea DSM 7271]
 gi|256581576|gb|ACU92711.1| ribosomal protein L24 [Capnocytophaga ochracea DSM 7271]
          Length = 104

 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V +  G      G V  VD EK+R  VE
Sbjct: 1   MMKLKIKTGDTVKIIAGEEKGKEGKVLRVDREKNRAIVE 39


>gi|119180397|ref|XP_001241674.1| hypothetical protein CIMG_08837 [Coccidioides immitis RS]
          Length = 1048

 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 24/152 (15%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     E++ V +I  R+               +                    GYV
Sbjct: 229 WAVKCRPGKEREIVFNIMKRIEERHSASRNPIRITSAFERGGT------------MSGYV 276

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   + +   V          + ++  E+  ++        R   S   + 
Sbjct: 277 YVEARKQADVMDALDNLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 324

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  G +      ++ V+     V V +
Sbjct: 325 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 356



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167
              VG+ V +  GP+    GIVK  D       VE+    +V PVE
Sbjct: 749 DRTVGKTVTIRKGPYKGLLGIVK--DTTDDIARVELHSVSKVVPVE 792


>gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus
           nasoniae]
          Length = 245

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 94  NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
                   E   I+   + A       +   VG+ + + DG  + F G +   +++  ++
Sbjct: 7   RIYHPNPLESGAIIQLSDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEANKKSVKI 66

Query: 154 HVEV-VIFGRVTPVELAYNQV----EKI 176
            + +  I  R +P++L   QV    EK+
Sbjct: 67  QLGLATIANRESPLDLHLGQVISRGEKM 94


>gi|189466345|ref|ZP_03015130.1| hypothetical protein BACINT_02719 [Bacteroides intestinalis DSM
          17393]
 gi|189434609|gb|EDV03594.1| hypothetical protein BACINT_02719 [Bacteroides intestinalis DSM
          17393]
          Length = 115

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 5  WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
          WYIV      E+K ++          L+    +   P + +     G+       FF G 
Sbjct: 17 WYIVYTAPRLERKLMQ---------HLNVAGYKTFCPMQTIYVNWDGKMKEIIVPFFSGC 67

Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94
          V ++  + D        + K    +GT   
Sbjct: 68 VFVEGDLKDIAPVVA--SQKAAFLVGTDGK 95


>gi|260800079|ref|XP_002594964.1| hypothetical protein BRAFLDRAFT_174745 [Branchiostoma floridae]
 gi|229280202|gb|EEN50975.1| hypothetical protein BRAFLDRAFT_174745 [Branchiostoma floridae]
          Length = 474

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 98  VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           V  +E ++         ++   +     G  V +  GP     G V++++ E +R  V +
Sbjct: 197 VRPTEDKNQRPLKPGETRKEEDTTGLVPGAHVLILAGPHRDMYGKVESLNAETARAVVSL 256

Query: 158 VIFGRVTPVELAYNQV 173
            + G+   +     QV
Sbjct: 257 ALGGQTLDISENALQV 272


>gi|317133339|ref|YP_004092653.1| hypothetical protein Ethha_2426 [Ethanoligenens harbinense YUAN-3]
 gi|315471318|gb|ADU27922.1| hypothetical protein Ethha_2426 [Ethanoligenens harbinense YUAN-3]
          Length = 279

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 18/165 (10%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M+  WYI+   S       + +   L R  +     +   P+       + +    E+  
Sbjct: 1   MSKAWYII--ASRK----QDELELLLDRKDI-----DYFNPTCLQARTTRQKLQLQEQNI 49

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV 118
             GYV     ++ + Y+   +       +     +N    T  E E +  +  AA     
Sbjct: 50  MGGYVFAYLDLSQEYYYLKHNEMFYGNVIAILGMDNGIAGTVDEDEVVEWRQLAAAVSVP 109

Query: 119 SSVFFEVGERVCVSDGPFASF-NGIVKNVDEEKSRVHVEVVIFGR 162
             + F  G +  +++       +  + +    K    +E+++ G+
Sbjct: 110 LRLRFTKG-KYRITN---KGLHSARIVHYYRRKLSASIEIMVAGK 150


>gi|289193203|ref|YP_003459144.1| ribosomal protein L24 [Methanocaldococcus sp. FS406-22]
 gi|288939653|gb|ADC70408.1| ribosomal protein L24 [Methanocaldococcus sp. FS406-22]
          Length = 120

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +++    G+ V +  G F    G V  VD ++ R++VE
Sbjct: 43  NAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVE 80


>gi|315040279|ref|XP_003169517.1| transcription elongation factor spt5 [Arthroderma gypseum CBS
           118893]
 gi|311346207|gb|EFR05410.1| transcription elongation factor spt5 [Arthroderma gypseum CBS
           118893]
          Length = 1082

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V +  GPF    GIVK  D       VE+    +V PVE     V+
Sbjct: 763 VGKTVHIRKGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 810


>gi|86141151|ref|ZP_01059697.1| ribosomal protein L24 [Leeuwenhoekiella blandensis MED217]
 gi|85831710|gb|EAQ50165.1| ribosomal protein L24 [Leeuwenhoekiella blandensis MED217]
          Length = 103

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  +VG+ V V  G      G V+ V ++K++  VE
Sbjct: 1   MTKLKIKVGDNVKVIAGDHKGQEGKVQRVIKDKNKAIVE 39


>gi|322372157|ref|ZP_08046698.1| ribosomal protein L24 [Haladaptatus paucihalophilus DX253]
 gi|320548166|gb|EFW89839.1| ribosomal protein L24 [Haladaptatus paucihalophilus DX253]
          Length = 118

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    SV    G+ V V  G FA   G V +VD +K+ V VE
Sbjct: 34  EEFDQRSVRVNAGDTVEVMRGDFAGEEGEVTSVDLKKAVVFVE 76


>gi|213962784|ref|ZP_03391044.1| ribosomal protein L24 [Capnocytophaga sputigena Capno]
 gi|213954441|gb|EEB65763.1| ribosomal protein L24 [Capnocytophaga sputigena Capno]
          Length = 103

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             +  + G+ V +  G      G V  VD EK+R  VE
Sbjct: 1   MKLKIKTGDTVKIIAGEEKGKEGKVLRVDREKNRAIVE 38


>gi|225010528|ref|ZP_03700999.1| ribosomal protein L24 [Flavobacteria bacterium MS024-3C]
 gi|225005357|gb|EEG43308.1| ribosomal protein L24 [Flavobacteria bacterium MS024-3C]
          Length = 104

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  +VG+ V V  G      G V +VD +KSR  VE
Sbjct: 1   MTKIKIKVGDTVKVIAGDHKGDQGKVVSVDLKKSRAIVE 39


>gi|260585154|ref|YP_003212728.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
 gi|260219336|emb|CBA34689.1| Transcriptional activator rfaH [Cronobacter turicensis z3032]
          Length = 156

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFF 61
           +WY++   S       + I  R+SR   + +  E+  P    V+ R   +   +     F
Sbjct: 10  KWYVLYCNS-------QDI-QRISRRA-EDIGVEVFCPRYIKVTPRTDCRAVRQEEKPLF 60

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106
           P Y+ ++  +      TI   P   GF+  G  P  V +S I  I
Sbjct: 61  PSYLFLRFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 105


>gi|256810635|ref|YP_003128004.1| ribosomal protein L24 [Methanocaldococcus fervens AG86]
 gi|256793835|gb|ACV24504.1| ribosomal protein L24 [Methanocaldococcus fervens AG86]
          Length = 120

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +++    G+ V +  G F    G V  VD ++ R++VE
Sbjct: 43  NAIPVRKGDVVRIMRGDFKGLEGEVTKVDLKRYRIYVE 80


>gi|400989|sp|Q02764|RK24_TOBAC RecName: Full=50S ribosomal protein L24, chloroplastic; AltName:
           Full=CL24; Flags: Precursor
 gi|170273|gb|AAA34086.1| ribosomal protein L24 [Nicotiana tabacum]
 gi|170324|gb|AAA34114.1| ribosomal protein L24 [Nicotiana tabacum]
          Length = 187

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 24/68 (35%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
            + + E P  +          + +      +  +  ++G+ V +  G      G +  + 
Sbjct: 29  LVKSTEGPCLIQAKLKRWERKECKPNSLPVLHKMHVKLGDTVKIISGHDKGKVGEITEII 88

Query: 148 EEKSRVHV 155
           +  S+V V
Sbjct: 89  KHNSKVVV 96


>gi|218534697|ref|YP_002424459.1| similar to transcriptional activator [Yersinia pseudotuberculosis]
 gi|218473166|emb|CAQ76594.1| similar to transcriptional activator [Yersinia pseudotuberculosis]
          Length = 152

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 44/159 (27%), Gaps = 22/159 (13%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFF 61
            WY+       E      +        L  L  +   P  R+   R  R          F
Sbjct: 3   NWYLACHQPGKETLYKAQLE-------LSRLHIDSFCPLIRLSRPRPDRPSGRLIIEPLF 55

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
            GY+ I+          +     V  F+  G +  P+  + IE +M       ++     
Sbjct: 56  SGYIFIQFDPEITHTTKLTALSSVSHFVKFGCDIRPIPKTVIESLMKLPLCPTEQD---- 111

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
                    V  G F      +  V  +  R  + + + 
Sbjct: 112 ---------VIAGRFKEKIVAITRVSNKHERTVMFLALM 141


>gi|14600658|ref|NP_147176.1| 50S ribosomal protein L24P [Aeropyrum pernix K1]
 gi|6685877|sp|Q9YF83|RL24_AERPE RecName: Full=50S ribosomal protein L24P
 gi|5103997|dbj|BAA79313.1| 50S ribosomal protein L24P [Aeropyrum pernix K1]
          Length = 132

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            S+    G++V V  G F    G V  VD  + R+++
Sbjct: 44  RSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYI 80


>gi|159042388|ref|YP_001541640.1| ribosomal protein L24 [Caldivirga maquilingensis IC-167]
 gi|218546937|sp|A8MB21|RL24_CALMQ RecName: Full=50S ribosomal protein L24P
 gi|157921223|gb|ABW02650.1| ribosomal protein L24 [Caldivirga maquilingensis IC-167]
          Length = 143

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
             +   VG+ V +  G F    G V  VD ++ R++V
Sbjct: 44  RRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYV 80


>gi|254572547|ref|XP_002493383.1| Protein that forms a complex with Spt4p [Pichia pastoris GS115]
 gi|238033181|emb|CAY71204.1| Protein that forms a complex with Spt4p [Pichia pastoris GS115]
 gi|328352603|emb|CCA39001.1| Transcription elongation factor spt5 [Pichia pastoris CBS 7435]
          Length = 908

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV----VIFGRVTPVELAY 170
           +   + V F+ G+ V + +G      G V +V++    V V +          T VE+  
Sbjct: 470 ETAKNLVSFQPGDNVEIINGELNHLTGTVSSVNQST-IVSVRLHSDDDTINSET-VEIPT 527

Query: 171 NQVEKI 176
           + + KI
Sbjct: 528 SDLRKI 533


>gi|156938196|ref|YP_001435992.1| 50S ribosomal protein L24P [Ignicoccus hospitalis KIN4/I]
 gi|166222062|sp|A8ACD3|RL24_IGNH4 RecName: Full=50S ribosomal protein L24P
 gi|156567180|gb|ABU82585.1| LSU ribosomal protein L24P [Ignicoccus hospitalis KIN4/I]
          Length = 125

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            +    G+ V +  G F    G V  VD +K+R++V
Sbjct: 44  RLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYV 79


>gi|224540035|ref|ZP_03680574.1| hypothetical protein BACCELL_04948 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518351|gb|EEF87456.1| hypothetical protein BACCELL_04948 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 115

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
          +  WY++      E+K ++          L     +   P + +     G+       FF
Sbjct: 14 SRSWYVLYTAPRLERKLMQ---------HLTVAGYKTYCPMQTIYVNWNGKTKEIIVPFF 64

Query: 62 PGYVLIKAVMTDK 74
           G V ++  + D 
Sbjct: 65 SGCVFVEGDLKDM 77


>gi|258578061|ref|XP_002543212.1| Spt5p protein [Uncinocarpus reesii 1704]
 gi|237903478|gb|EEP77879.1| Spt5p protein [Uncinocarpus reesii 1704]
          Length = 1052

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 24/152 (15%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     E++ V +I  R+               +                    GY+
Sbjct: 231 WAVKCRPGKEREIVFNIMKRMEERHPGSRNPLRITSAFERGGT------------MSGYI 278

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   +++   V          + ++  E+  ++        R   S   + 
Sbjct: 279 YVEARKQADVMDALENLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 326

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  G +      ++ V+     V V +
Sbjct: 327 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 358


>gi|322493051|emb|CBZ28336.1| transcription elongation regulator-like protein [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 702

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 34  LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80
            +T   +P E  V     +        F               Y+       D+  + +K
Sbjct: 303 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGVRERENSYIWGDLHF-DREGYLLK 361

Query: 81  DTPKVIGFLGTGENPSPVTD-----SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135
                +   G         +     ++    + +   A +         +G+ V V+ G 
Sbjct: 362 TVSTRMVISGAQLEQPSTEELARFYNDQREKVERALKAAEAAAQVPHISIGDSVRVTTGQ 421

Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
             +  G+V+NV    +   +     GRV P+++   QVE
Sbjct: 422 LRNTIGVVENVFTNTNTAVLTCTAPGRVQPIKV---QVE 457


>gi|154311963|ref|XP_001555310.1| hypothetical protein BC1G_06015 [Botryotinia fuckeliana B05.10]
 gi|150850665|gb|EDN25858.1| hypothetical protein BC1G_06015 [Botryotinia fuckeliana B05.10]
          Length = 370

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 13/144 (9%)

Query: 9   QVYSNCEKK----AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           +  S  EK     AV+ +  + SR   +  + +   P     +     K ++   +   Y
Sbjct: 96  RTLSGQEKAEYLAAVQCLATKPSRVRNNGTLYDDF-PWVHRYTSTSTHKASAFLPWHRYY 154

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124
           + I             D              S   +      +   +             
Sbjct: 155 IQIY------ENALKDDCSYTGTLPYWD--WSLDWEDFSRAPIWGHDNFGSDGNLDAETS 206

Query: 125 VGERVCVSDGPFASFNGIVKNVDE 148
           VG+  CV DGPFA    +  + D 
Sbjct: 207 VGDGHCVIDGPFAGLTAMFYDNDY 230


>gi|296109309|ref|YP_003616258.1| ribosomal protein L24 [Methanocaldococcus infernus ME]
 gi|295434123|gb|ADG13294.1| ribosomal protein L24 [Methanocaldococcus infernus ME]
          Length = 121

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +++    G+ V +  G F    G V  VD ++ R++V
Sbjct: 43  NAIPVRKGDVVRIMRGDFKGLEGEVTKVDLKRYRIYV 79


>gi|284040610|ref|YP_003390540.1| ribosomal protein L24 [Spirosoma linguale DSM 74]
 gi|283819903|gb|ADB41741.1| ribosomal protein L24 [Spirosoma linguale DSM 74]
          Length = 118

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +E  +  P      + G+ V V  G      G+V  V  EK R  VE
Sbjct: 1   MEKKITLPKHKFHIKTGDTVVVIGGNSKGQRGVVTEVIVEKDRARVE 47


>gi|225461164|ref|XP_002282889.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147860928|emb|CAN78749.1| hypothetical protein VITISV_002445 [Vitis vinifera]
          Length = 191

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 22/68 (32%)

Query: 88  FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147
              + E P P+          + +      +  +  +VG+ V +  G      G +  + 
Sbjct: 34  LAKSTEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIF 93

Query: 148 EEKSRVHV 155
              S V V
Sbjct: 94  RHNSTVVV 101


>gi|313677131|ref|YP_004055127.1| LSU ribosomal protein l24p [Marivirga tractuosa DSM 4126]
 gi|312943829|gb|ADR23019.1| LSU ribosomal protein L24P [Marivirga tractuosa DSM 4126]
          Length = 115

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 14/46 (30%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               +          G+ V V  G      G V  +  EK R  VE
Sbjct: 1   MERRKNKQQKFHIRKGDTVKVIAGNAKGKTGTVLEMIGEKDRAIVE 46


>gi|156404091|ref|XP_001640241.1| predicted protein [Nematostella vectensis]
 gi|156227374|gb|EDO48178.1| predicted protein [Nematostella vectensis]
          Length = 485

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
             +P   + + VG    +  G     +G + +VD + SRV V + I
Sbjct: 235 EVKPSEPLDYRVGTCAVIGRGAHKDLHGKIISVDVDNSRVTVSLHI 280


>gi|218130699|ref|ZP_03459503.1| hypothetical protein BACEGG_02290 [Bacteroides eggerthii DSM
          20697]
 gi|217987043|gb|EEC53374.1| hypothetical protein BACEGG_02290 [Bacteroides eggerthii DSM
          20697]
          Length = 107

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 4  RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
          RW  +      E+K    +  RL+ +G          P + V     G+        FPG
Sbjct: 9  RWCALYTAPRSERK----LMQRLNEAGYA-----AFCPMQIVFRKWNGKTKEVFTPLFPG 59

Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG 90
          ++ ++       +   ++   ++   G
Sbjct: 60 FLFVEETADVASFVASQNVALLVDAEG 86


>gi|326481035|gb|EGE05045.1| transcription elongation factor spt5 [Trichophyton equinum CBS
           127.97]
          Length = 865

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V +  GPF    GIVK  D       VE+    +V PVE     V+
Sbjct: 588 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 635


>gi|326470197|gb|EGD94206.1| hypothetical protein TESG_01728 [Trichophyton tonsurans CBS 112818]
          Length = 1080

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V +  GPF    GIVK  D       VE+    +V PVE     V+
Sbjct: 761 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 808


>gi|327297829|ref|XP_003233608.1| transcription elongation factor spt5 [Trichophyton rubrum CBS
           118892]
 gi|326463786|gb|EGD89239.1| transcription elongation factor spt5 [Trichophyton rubrum CBS
           118892]
          Length = 1079

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V +  GPF    GIVK  D       VE+    +V PVE     V+
Sbjct: 760 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 807


>gi|307595642|ref|YP_003901959.1| 50S ribosomal protein L24 [Vulcanisaeta distributa DSM 14429]
 gi|307550843|gb|ADN50908.1| ribosomal protein L24 [Vulcanisaeta distributa DSM 14429]
          Length = 161

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               G+ V +  G F    G V  VD  K R++VE
Sbjct: 47  PVRKGDTVLILRGDFKGVRGKVVEVDLRKMRIYVE 81


>gi|302653362|ref|XP_003018508.1| hypothetical protein TRV_07454 [Trichophyton verrucosum HKI 0517]
 gi|291182159|gb|EFE37863.1| hypothetical protein TRV_07454 [Trichophyton verrucosum HKI 0517]
          Length = 1099

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V +  GPF    GIVK  D       VE+    +V PVE     V+
Sbjct: 760 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 807


>gi|302507360|ref|XP_003015641.1| hypothetical protein ARB_05952 [Arthroderma benhamiae CBS 112371]
 gi|291179209|gb|EFE34996.1| hypothetical protein ARB_05952 [Arthroderma benhamiae CBS 112371]
          Length = 1079

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174
           VG+ V +  GPF    GIVK  D       VE+    +V PVE     V+
Sbjct: 760 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 807


>gi|262381976|ref|ZP_06075114.1| transcriptional regulator UpxY [Bacteroides sp. 2_1_33B]
 gi|262297153|gb|EEY85083.1| transcriptional regulator UpxY [Bacteroides sp. 2_1_33B]
          Length = 265

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 89  LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144
            G       ++D E+E +     +        V        G+RV ++ GPFA     V 
Sbjct: 16  SGGRSYFPYLSDREMETLRWVAASYSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV 75

Query: 145 NVDEEKSRVHVEVVIF 160
            V        V V I 
Sbjct: 76  -VQPGGGHKDVMVRIL 90


>gi|240104048|ref|YP_002960357.1| 50S ribosomal protein L24P [Thermococcus gammatolerans EJ3]
 gi|239911602|gb|ACS34493.1| LSU ribosomal protein L24P (rpl24P) [Thermococcus gammatolerans
           EJ3]
          Length = 121

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               G++V V  G F    G V  VD ++ R+HVE
Sbjct: 45  PIREGDKVRVMRGDFKGKEGKVLEVDLKRYRIHVE 79


>gi|198275733|ref|ZP_03208264.1| hypothetical protein BACPLE_01908 [Bacteroides plebeius DSM 17135]
 gi|198271362|gb|EDY95632.1| hypothetical protein BACPLE_01908 [Bacteroides plebeius DSM 17135]
          Length = 175

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 14/176 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           +W++++  +    K             LD +  E   P    +  R G++   E  F   
Sbjct: 7   KWFVMRDLTRSNAKIPAY-------QMLDDMGIENFTPKVTKIVTRNGKRERKELPFIHD 59

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS 119
            + + +  T       +       FL  G  P  V D ++      V          P  
Sbjct: 60  LIFVHSSRTVIDPIVERVHTFQYRFL-KGREPMIVRDKDMASFKQAVESSRFPQYYSPQD 118

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKS-RVHVEVVIF-GRVTPVELAYNQV 173
                   ++ +  G      G +  V   K  R+ VE+ +       VE  Y Q+
Sbjct: 119 ITPCMFKRKIRIIGGRLDGCEGYLLTVRGSKRKRLLVELPMLITAAVEVEPEYIQL 174


>gi|124028166|ref|YP_001013486.1| 50S ribosomal protein L24P [Hyperthermus butylicus DSM 5456]
 gi|166222061|sp|A2BMD0|RL24_HYPBU RecName: Full=50S ribosomal protein L24P
 gi|123978860|gb|ABM81141.1| 50S ribosomal protein L24P [Hyperthermus butylicus DSM 5456]
          Length = 149

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            S+   VG+ V +  G F    G V  VD  + R+ VE
Sbjct: 43  RSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVE 80


>gi|298705365|emb|CBJ28655.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1000

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNV--DEEK-SRVHVEVVI 159
             + +VG  V + DG F    G +  +  + +  SR  V   +
Sbjct: 488 EKYIKVGGHVRIIDGRFTGETGTILKIVKNPDGASRAMVLTDM 530


>gi|221117155|ref|XP_002160161.1| PREDICTED: similar to suppressor of Ty 5 homolog (S. cerevisiae),
           partial [Hydra magnipapillata]
          Length = 687

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +G+ V +  GPF  + GI+K+  +  +R+ +
Sbjct: 338 IGQTVRIVQGPFKGYIGIIKDATDSLARIEL 368


>gi|222524571|ref|YP_002569042.1| MutS2 family protein [Chloroflexus sp. Y-400-fl]
 gi|222448450|gb|ACM52716.1| MutS2 family protein [Chloroflexus sp. Y-400-fl]
          Length = 819

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
            +N        P +    +VG++V V+       NG +  +DEE     V+V  F     
Sbjct: 651 RLNVQTQPAPPPPAEKPLQVGDQVQVTS---IGLNGEIVAIDEEDQTATVQVGGF----R 703

Query: 166 VELAYNQVEK 175
           + +++N +++
Sbjct: 704 MTVSFNDLKR 713


>gi|254172791|ref|ZP_04879465.1| ribosomal protein L24 [Thermococcus sp. AM4]
 gi|214032947|gb|EEB73775.1| ribosomal protein L24 [Thermococcus sp. AM4]
          Length = 121

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               G++V V  G F    G V  VD ++ R+HVE
Sbjct: 45  PIREGDKVKVMRGDFKGKEGKVVEVDLKRYRIHVE 79


>gi|163846758|ref|YP_001634802.1| MutS2 family protein [Chloroflexus aurantiacus J-10-fl]
 gi|163668047|gb|ABY34413.1| MutS2 family protein [Chloroflexus aurantiacus J-10-fl]
          Length = 823

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165
            +N        P +    +VG++V V+       NG +  +DEE     V+V  F     
Sbjct: 655 RLNVQTQPAPPPPAEKPLQVGDQVQVTS---IGLNGEIVAIDEEDQTATVQVGGF----R 707

Query: 166 VELAYNQVEK 175
           + +++N +++
Sbjct: 708 MTVSFNDLKR 717


>gi|224011834|ref|XP_002294570.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969590|gb|EED87930.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 888

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 84  KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE---VGERVCVSDGPFASFN 140
              G+   G+    V D E+        A     V+ V  +   +G  V ++ GPF    
Sbjct: 211 NARGWFSIGDRKFRVGDVEVISYPTTTTADGDATVAEVDAQDKYMGALVRITTGPFEGME 270

Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
           G +K    +++   +   I G++    ++++ V+ I
Sbjct: 271 GTIKE-RTDQTFFKLR-EIPGKI----VSFDDVKLI 300


>gi|269860187|ref|XP_002649816.1| transcription initiation protein SPT5 [Enterocytozoon bieneusi
           H348]
 gi|220066757|gb|EED44229.1| transcription initiation protein SPT5 [Enterocytozoon bieneusi
           H348]
          Length = 592

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 110 VEAAVQRPVSSVFFE------VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           V   +++P   V F+      +G+ V ++ G F    G VK ++    R+ +
Sbjct: 374 VSEKIEKPPVKVPFKKHINPLIGKSVKITHGEFKGLIGTVKEINRMSCRIRL 425


>gi|300708088|ref|XP_002996231.1| hypothetical protein NCER_100690 [Nosema ceranae BRL01]
 gi|239605514|gb|EEQ82560.1| hypothetical protein NCER_100690 [Nosema ceranae BRL01]
          Length = 138

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             S    VG+ V V  GPF    G V  V  +K R+ +E
Sbjct: 45  FRSFPVAVGDIVKVHSGPFRGKEGQVMEVILKKYRITIE 83


>gi|330038743|ref|XP_003239687.1| 60S ribosomal protein L26 [Cryptomonas paramecium]
 gi|327206611|gb|AEA38789.1| 60S ribosomal protein L26 [Cryptomonas paramecium]
          Length = 87

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           S+  +VG+RV ++ G F   +G +  +  +++ V++E
Sbjct: 31  SILIKVGDRVRITKGSFKGHSGKIIEICTKRNFVYIE 67


>gi|147838939|emb|CAN68098.1| hypothetical protein VITISV_043874 [Vitis vinifera]
          Length = 1107

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 13/45 (28%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           +G  + +  GPF  + G V +V+             G+   VEL 
Sbjct: 702 IGSTIKIRQGPFKGYRGRVVDVN-------------GQSVRVELE 733


>gi|41615050|ref|NP_963548.1| 50S ribosomal protein L24P [Nanoarchaeum equitans Kin4-M]
 gi|46397672|sp|P60663|RL24_NANEQ RecName: Full=50S ribosomal protein L24P
 gi|40068774|gb|AAR39109.1| NEQ257 [Nanoarchaeum equitans Kin4-M]
          Length = 140

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            +V  +VG+ V V  G F    G V ++D +  RV++ + 
Sbjct: 56  RNVPIKVGDVVRVERGNFRGKEGQVIDIDPKYYRVYLSLD 95


>gi|327402772|ref|YP_004343610.1| 50S ribosomal protein L24P [Fluviicola taffensis DSM 16823]
 gi|327318280|gb|AEA42772.1| LSU ribosomal protein L24P [Fluviicola taffensis DSM 16823]
          Length = 105

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
              +  +VG+ V V  G      G V  +D  K R  V
Sbjct: 2   QKKLHIKVGDTVKVLSGESRGQEGTVLTIDRNKERATV 39


>gi|94970553|ref|YP_592601.1| hypothetical protein Acid345_3526 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552603|gb|ABF42527.1| hypothetical protein Acid345_3526 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 408

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHV 155
            +  G F S  G V++VD+EK+RV V
Sbjct: 210 EIVSGSFRSVAGTVQSVDKEKNRVTV 235


>gi|260061908|ref|YP_003194988.1| 50S ribosomal protein L24 [Robiginitalea biformata HTCC2501]
 gi|88786041|gb|EAR17210.1| 50S ribosomal protein L24 [Robiginitalea biformata HTCC2501]
          Length = 103

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
                + G+ V V  G      G V  +  EK++  VE
Sbjct: 1   MKFKIKSGDTVRVIAGDHKGSEGKVVRIIREKNKAIVE 38


>gi|315925245|ref|ZP_07921459.1| 50S ribosomal protein L24 [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621479|gb|EFV01446.1| 50S ribosomal protein L24 [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 107

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
             +  + G+ V V  G      G V  VD EK RV VE V I
Sbjct: 3   RKLHVKTGDTVQVISGKDLGKTGKVLAVDLEKRRVKVEGVNI 44


>gi|254562745|ref|YP_003069840.1| hypothetical protein METDI4379 [Methylobacterium extorquens DM4]
 gi|254270023|emb|CAX26009.1| hypothetical protein METDI4379 [Methylobacterium extorquens DM4]
          Length = 92

 Score = 36.2 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +VGE V  S G F+ F G      E  +   + + + G      L    ++++
Sbjct: 38  MQVGEEVRASSGLFSGFIGKFVGTAEGGAVGVISLEVMGSPFDYRLPIEDIQRV 91


>gi|299140995|ref|ZP_07034133.1| hypothetical protein HMPREF0665_00557 [Prevotella oris C735]
 gi|298577961|gb|EFI49829.1| hypothetical protein HMPREF0665_00557 [Prevotella oris C735]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 16/151 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +++++  +K        +    GL+  + E  +     +     +     R      
Sbjct: 13  WYAIKLFTVRQKAVAAYFDEK----GLETFIPEEYVD----IEDENHKVKRVLRPVVRNL 64

Query: 65  VLIKAVMTDK--VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
           + +K    ++    + +  T K+     + EN S      ++    +     +  +    
Sbjct: 65  IFLKKDRDEQEIRKYVLASTFKMSVVTKSRENKSYYEIPAVQMFEFRAMCNPELTMRKYL 124

Query: 122 -----FFEVGERVCVSDGPFASFNGIVKNVD 147
                  + G+RV V  GP     G +   +
Sbjct: 125 SEEQAHLKKGDRVLVKHGPLKGLTGRLVRSN 155


>gi|281201347|gb|EFA75559.1| transcription initiation factor Spt5 [Polysphondylium pallidum
           PN500]
          Length = 680

 Score = 36.2 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 97  PVTDSEIEHIMNQVEAAVQRPV---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153
              DSE    MN +  A   P      + F  G+ V V +G   +  GIV +VD +KS  
Sbjct: 99  YGDDSEQPSTMNSILDAQIIPKVAARPINFSKGDTVKVIEGDLKNLMGIVDSVD-DKSVA 157

Query: 154 HV 155
            +
Sbjct: 158 VL 159


>gi|317474236|ref|ZP_07933512.1| transcription termination factor nusG [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909546|gb|EFV31224.1| transcription termination factor nusG [Bacteroides eggerthii
          1_2_48FAA]
          Length = 115

 Score = 36.2 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 4  RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
          RW  +      E+K    +  RL+ +G          P + V     G+        FPG
Sbjct: 17 RWCALYTAPRSERK----LMQRLNEAGYA-----AFCPMQIVFRKWNGKTKEVFTPLFPG 67

Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG 90
          ++ ++       +   ++   ++   G
Sbjct: 68 FLFVEETADVASFVASQNVALLVDAEG 94


>gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
 gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
          Length = 1367

 Score = 36.2 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 13/126 (10%)

Query: 15  EKKAVESIGGRL-------------SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
           E K   ++  RL                GL   + ++ I  E           N     F
Sbjct: 636 EAKVKRALLTRLLGFNLKKLIDLQGQSEGLSRYIADLDIIREMWFEKGFLTAWNYALNLF 695

Query: 62  PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121
             +  + A  +      + +   +   L                 + Q+++   +     
Sbjct: 696 QVWTNLVASQSLDNERVVVNLRHLTEILSQQSEYYQGAQKLYHWYLRQLQSPSGKDSEKE 755

Query: 122 FFEVGE 127
               G+
Sbjct: 756 RKLSGD 761


>gi|224536078|ref|ZP_03676617.1| hypothetical protein BACCELL_00943 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224522297|gb|EEF91402.1| hypothetical protein BACCELL_00943 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 95

 Score = 36.2 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61
          T  WYIV      E+K  E++       G+   +  I +       V++ +     R  F
Sbjct: 13 TRNWYIVLTLPRKERKTKETLE----NKGMITYLPTIYVKRRWKEQVKEIQIPAVNRCVF 68

Query: 62 PG 63
            
Sbjct: 69 IY 70


>gi|326479052|gb|EGE03062.1| KOW domain-containing protein [Trichophyton equinum CBS 127.97]
          Length = 356

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
               +   +  +   + +   +    + V  V F  G+RVC+  G      G V  VDEE
Sbjct: 69  RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEE 128

Query: 150 KSRVHVE-VVIFGRVTPV 166
              V VE V +F    P 
Sbjct: 129 SQSVTVEGVNMFDVEFPA 146


>gi|313244793|emb|CBY15497.1| unnamed protein product [Oikopleura dioica]
          Length = 441

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +         +   ++    G  V +  GP+    G +  +D +  RV V
Sbjct: 205 MKKAELKEENKSGVALEMRKGAFVEIEHGPYKGRYGKIIAIDGDMGRVTV 254


>gi|219851118|ref|YP_002465550.1| 50S ribosomal protein L24P [Methanosphaerula palustris E1-9c]
 gi|219545377|gb|ACL15827.1| ribosomal protein L24 [Methanosphaerula palustris E1-9c]
          Length = 122

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIF---GRVTPVELAYNQVEKI 176
            G+ V V  G F    G+V  VD   S++ V  V +    G   P ++  + V+ I
Sbjct: 50  TGDTVKVLRGDFIGEEGVVDGVDTRTSKIIVHGVSVTKADGTEVPRKVDPSNVQII 105


>gi|326469829|gb|EGD93838.1| hypothetical protein TESG_01370 [Trichophyton tonsurans CBS 112818]
          Length = 356

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
               +   +  +   + +   +    + V  V F  G+RVC+  G      G V  VDEE
Sbjct: 69  RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEE 128

Query: 150 KSRVHVE-VVIFGRVTPV 166
              V VE V +F    P 
Sbjct: 129 SQSVTVEGVNMFDVEFPA 146


>gi|325967618|ref|YP_004243810.1| 50S ribosomal protein L24 [Vulcanisaeta moutnovskia 768-28]
 gi|323706821|gb|ADY00308.1| 50S ribosomal protein L24 [Vulcanisaeta moutnovskia 768-28]
          Length = 159

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               G+ V +  G F    G V  VD  K R+HVE
Sbjct: 47  PVRKGDTVLILRGDFKGVRGKVMEVDLRKMRIHVE 81


>gi|327400861|ref|YP_004341700.1| 50S ribosomal protein L24 [Archaeoglobus veneficus SNP6]
 gi|327316369|gb|AEA46985.1| ribosomal protein L24 [Archaeoglobus veneficus SNP6]
          Length = 117

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            S+  + G++V +  G FA   G V  VD ++  + V
Sbjct: 41  RSIRIKKGDKVRIMRGKFAGHEGRVLEVDMKRCVIKV 77


>gi|242088405|ref|XP_002440035.1| hypothetical protein SORBIDRAFT_09g024890 [Sorghum bicolor]
 gi|241945320|gb|EES18465.1| hypothetical protein SORBIDRAFT_09g024890 [Sorghum bicolor]
          Length = 1569

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 95  PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
               ++   E   ++      R      F VG+ + +  GP   +   V  +   ++ V 
Sbjct: 544 TPMFSEPTYEQNEHRDTERPYRSTREQLFSVGQMLRIRKGPLKGYLCRVVRIF--RNDVT 601

Query: 155 VEVVIFGRVTPVELAYNQV 173
           V++    +   V+     V
Sbjct: 602 VKLDSLLKTVTVQADLLSV 620


>gi|156103269|ref|XP_001617327.1| 50S ribosomal protein L24 [Plasmodium vivax SaI-1]
 gi|148806201|gb|EDL47600.1| 50S ribosomal protein L24, putative [Plasmodium vivax]
          Length = 244

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
             +VG+ V V  GP+    GIV N++ +++ V V
Sbjct: 55  NIKVGDLVKVLYGPYKDKEGIVLNINTKRNTVIV 88


>gi|170576825|ref|XP_001893778.1| KOW motif family protein [Brugia malayi]
 gi|158600001|gb|EDP37376.1| KOW motif family protein [Brugia malayi]
          Length = 277

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 11/149 (7%)

Query: 23  GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82
             R  R     L     +P E V  V++          +    +++  +       +   
Sbjct: 7   LSRSVRRTYMELDFAKHVPKEYVGKVKRTVPKKVYTNRYGAPDIVRWTL--HPDDYVPSD 64

Query: 83  PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE-----VGERVCVSDGPFA 137
            +        +N     +     +M++          ++  E      G+ V V  G   
Sbjct: 65  GRPWELETFEKNVQRAREYHQHKLMHKFFELRHEKKVAIPAEEWTIFPGDLVQVMIGKDK 124

Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
              G+V  V++E + + V+    GR T +
Sbjct: 125 GKTGVVSRVNKETNAIFVK----GRHTKL 149


>gi|46397696|sp|Q8U010|RL24_PYRFU RecName: Full=50S ribosomal protein L24P
          Length = 121

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V +  G +    G V  VD ++ R++VE
Sbjct: 45  PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79


>gi|295668190|ref|XP_002794644.1| transcription elongation factor spt5 [Paracoccidioides brasiliensis
           Pb01]
 gi|226286060|gb|EEH41626.1| transcription elongation factor spt5 [Paracoccidioides brasiliensis
           Pb01]
          Length = 1105

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 24/152 (15%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           + V+     E++ V +I  R+              P +    +R             GY+
Sbjct: 245 WAVKCRPGKEREVVFNIMKRIEDR-----------PPDSRRPIRIMSAFERGG-TMSGYI 292

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            ++A     V   + D   V     T      ++  E+  ++   ++    P        
Sbjct: 293 YVEARRQADVIDALDDMSNVY----TKSKMILISVKEMPDLLRVTKSEELVP-------- 340

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
           G  V +  G +      +++V+     V V +
Sbjct: 341 GGWVRIKRGKYQGDLAQLEDVETNGLDVTVRL 372


>gi|156937967|ref|YP_001435763.1| transcription antitermination protein NusG [Ignicoccus hospitalis
           KIN4/I]
 gi|156566951|gb|ABU82356.1| NGN domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 147

 Score = 35.8 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 31/150 (20%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+  S  E      I  R     LD  V  + +P                     G+V++
Sbjct: 8   VRTVSGREIDVALLIEERARAKNLD--VKSVIVP-----------------PRIKGFVIV 48

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +   +   +   +    +    G       + +         V   ++        EVG+
Sbjct: 49  E---SPAHFVVAEAVRGIKYVRGGPGKKISLEE---------VLKMIKPVPIIETVEVGD 96

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            V +  G F      V+    EK+ + + +
Sbjct: 97  IVELVAGVFKGVKARVEAKIPEKNELVLSI 126


>gi|229829418|ref|ZP_04455487.1| hypothetical protein GCWU000342_01508 [Shuttleworthia satelles DSM
           14600]
 gi|229791849|gb|EEP27963.1| hypothetical protein GCWU000342_01508 [Shuttleworthia satelles DSM
           14600]
          Length = 103

 Score = 35.8 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++++  + G+ V V  G   +  G V +VD +K R+ VE
Sbjct: 1   MATMKIKKGDMVRVIAGADKNNEGKVLSVDPKKGRLVVE 39


>gi|311748503|ref|ZP_07722288.1| ribosomal protein L24 [Algoriphagus sp. PR1]
 gi|126577020|gb|EAZ81268.1| ribosomal protein L24 [Algoriphagus sp. PR1]
          Length = 114

 Score = 35.8 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 16/46 (34%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
                     +  + G+ V V  G      G V +VD  K R  VE
Sbjct: 1   MERKFNKQPKLHIKTGDTVKVISGDDKGKTGKVLSVDIAKRRAFVE 46


>gi|120437163|ref|YP_862849.1| 50S ribosomal protein L24 [Gramella forsetii KT0803]
 gi|166222056|sp|A0M587|RL24_GRAFK RecName: Full=50S ribosomal protein L24
 gi|117579313|emb|CAL67782.1| 50S ribosomal protein L24 [Gramella forsetii KT0803]
          Length = 103

 Score = 35.8 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  + G+ V V  G      G V+ V  EK++  VE
Sbjct: 1   MTKLKIKSGDTVRVIAGDHKGQEGKVQKVLIEKNKAIVE 39


>gi|325283271|ref|YP_004255812.1| luciferase family oxidoreductase, group 1 [Deinococcus
           proteolyticus MRP]
 gi|324315080|gb|ADY26195.1| luciferase family oxidoreductase, group 1 [Deinococcus
           proteolyticus MRP]
          Length = 333

 Score = 35.8 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 42/158 (26%), Gaps = 20/158 (12%)

Query: 8   VQVYSNCEKKAVESIG-------GRLSRSGLDHLVTEITIPSERVVSVRKGRK------- 53
           VQ Y   E      I           ++ GL +       P     + R  R        
Sbjct: 153 VQAYPGKETHVPLYILGSSLFGAELAAQLGLPYAFASHFAPPALNQAARLYRGTFNADGP 212

Query: 54  --VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111
                 +  F   V + A   +   H  +   +     G       V  ++   ++ +  
Sbjct: 213 LAPADAKPHFIAAVNVIASDDESTAHEQRRLAEDEWLQGMFGRGERVFSADELEMLRESS 272

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
            A Q          G +  V     A  N +VK V  +
Sbjct: 273 QAQQVLQMLSRTVAGTQAEVV----AGLNALVKEVQAD 306


>gi|126329447|ref|XP_001374291.1| PREDICTED: similar to G patch domain and KOW motifs [Monodelphis
           domestica]
          Length = 512

 Score = 35.8 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            G+ V V  GP     G V+ +D + +R  V +
Sbjct: 224 PGKAVLVLAGPHRGLYGKVEGLDPDNARAVVRL 256


>gi|328865473|gb|EGG13859.1| hypothetical protein DFA_11620 [Dictyostelium fasciculatum]
          Length = 531

 Score = 35.8 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 23/71 (32%)

Query: 84  KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143
           +        +        E   + + V  + +        + G+RV V  GP    N  V
Sbjct: 271 QPSDVANKEKKYMTAPKGEDGKVRHTVGLSEKLVPLKFGLQPGDRVLVISGPHEGLNATV 330

Query: 144 KNVDEEKSRVH 154
           +++ +    V 
Sbjct: 331 ESLAQSDRIVI 341


>gi|315225412|ref|ZP_07867226.1| 50S ribosomal protein L24 [Capnocytophaga ochracea F0287]
 gi|314944685|gb|EFS96720.1| 50S ribosomal protein L24 [Capnocytophaga ochracea F0287]
          Length = 104

 Score = 35.8 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V V  G      G V  VD EK+R  +E
Sbjct: 1   MMKLKIKTGDTVKVIAGDEKGKEGKVLRVDREKNRAIIE 39


>gi|145591930|ref|YP_001153932.1| 50S ribosomal protein L24P [Pyrobaculum arsenaticum DSM 13514]
 gi|166222094|sp|A4WLL3|RL24_PYRAR RecName: Full=50S ribosomal protein L24P
 gi|145283698|gb|ABP51280.1| LSU ribosomal protein L24P [Pyrobaculum arsenaticum DSM 13514]
          Length = 122

 Score = 35.8 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V +  G F    G V  VD +K R++VE
Sbjct: 50  GDTVMILRGDFKGVTGKVVRVDLKKVRIYVE 80


>gi|329954411|ref|ZP_08295503.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
 gi|328527679|gb|EGF54672.1| transcription termination/antitermination factor NusG [Bacteroides
           clarus YIT 12056]
          Length = 161

 Score = 35.8 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 15/147 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           W+ ++     E +A   +  +           E  +P    V  +  +K           
Sbjct: 10  WFAMRAPFCKELEAKRLLDKQA---------IENFVPMCYKVFEKNNKKRKELVPAVHNL 60

Query: 65  VLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-----V 118
           + ++                + I     G+N   +           V             
Sbjct: 61  IFVRTTRRIIRETKRTVPFLQYITMPDAGKNSPIIVPDIRMQQFISVSRLHNERLIYLTP 120

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKN 145
             +    G RV V  GPF    G+   
Sbjct: 121 EEINLAKGTRVRVLGGPFDGVEGVFVK 147


>gi|305665126|ref|YP_003861413.1| 50S ribosomal protein L24 [Maribacter sp. HTCC2170]
 gi|88709878|gb|EAR02110.1| 50S ribosomal protein L24 [Maribacter sp. HTCC2170]
          Length = 104

 Score = 35.8 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V +  G      G V  V  EK +  VE
Sbjct: 1   MKKLKIKTGDTVRIIAGDHKGTEGKVTKVFIEKDKAIVE 39


>gi|281424262|ref|ZP_06255175.1| putative UpdY protein [Prevotella oris F0302]
 gi|281401531|gb|EFB32362.1| putative UpdY protein [Prevotella oris F0302]
          Length = 195

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 16/151 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +++++  +K        +    GL+  + E  +     +     +     R      
Sbjct: 27  WYAIKLFTVRQKAVAAYFNEK----GLETFIPEEYVD----IEDENHKVKRVLRPVVRNL 78

Query: 65  VLIKAVMTDK--VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121
           + +K    ++    + +  T K+     + EN S      ++    +     +  +    
Sbjct: 79  IFLKKDRDEQEIRKYVLASTFKMSVVTKSRENKSYYEIPAVQMFEFRAMCNPELTMRKYL 138

Query: 122 -----FFEVGERVCVSDGPFASFNGIVKNVD 147
                  + G+RV V  GP     G +   +
Sbjct: 139 SEEQAHLKKGDRVLVKHGPLKGLTGRLVRSN 169


>gi|83949777|ref|ZP_00958510.1| ribosomal protein L24 [Roseovarius nubinhibens ISM]
 gi|83837676|gb|EAP76972.1| ribosomal protein L24 [Roseovarius nubinhibens ISM]
          Length = 103

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
           + G++V V  G      G + +VD +  +  VE V +  R T 
Sbjct: 6   KKGDKVVVLSGKDKGKEGTITSVDPKSGKAVVEGVNMAIRHTR 48


>gi|288931521|ref|YP_003435581.1| ribosomal protein L24 [Ferroglobus placidus DSM 10642]
 gi|288893769|gb|ADC65306.1| ribosomal protein L24 [Ferroglobus placidus DSM 10642]
          Length = 120

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 101 SEIEHIMNQVEAAVQRPVS---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            E   +++   +   R      ++    G++V +  G F    G V  VD ++ R++VE
Sbjct: 23  HEKHRLLHATLSKELREKYGKRAIRVRKGDKVKILRGDFKGHVGKVVEVDMKRVRIYVE 81


>gi|126329451|ref|XP_001374322.1| PREDICTED: similar to G patch domain and KOW motifs [Monodelphis
           domestica]
          Length = 514

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
            G  V V  GP     G V+ +D + +R  V +
Sbjct: 261 PGRAVLVLAGPHRGLYGKVEGLDPDNARAVVRL 293


>gi|124484920|ref|YP_001029536.1| 50S ribosomal protein L24P [Methanocorpusculum labreanum Z]
 gi|166222069|sp|A2SPL3|RL24_METLZ RecName: Full=50S ribosomal protein L24P
 gi|124362461|gb|ABN06269.1| LSU ribosomal protein L24P [Methanocorpusculum labreanum Z]
          Length = 121

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            G+ V V  G F    G+V  VD + ++V V
Sbjct: 49  TGDTVKVLRGEFKGIEGVVDGVDVKNTKVLV 79


>gi|18978185|ref|NP_579542.1| 50S ribosomal protein L24P [Pyrococcus furiosus DSM 3638]
 gi|18893994|gb|AAL81937.1| LSU ribosomal protein L24P [Pyrococcus furiosus DSM 3638]
          Length = 124

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              VG++V +  G +    G V  VD ++ R++VE
Sbjct: 48  PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 82


>gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822]
 gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822]
          Length = 1006

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169
           + F+ G+RV + DG    + G +K++     +  V + +   V PV+L 
Sbjct: 955 IKFKPGDRV-IDDG---GWKGTIKSIHPNGKKAQVYLDLMESVHPVDLD 999


>gi|312137087|ref|YP_004004424.1| lsu ribosomal protein l24p [Methanothermus fervidus DSM 2088]
 gi|311224806|gb|ADP77662.1| LSU ribosomal protein L24P [Methanothermus fervidus DSM 2088]
          Length = 123

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             +V    G++V V  G F    G V+NVD ++ RV+VE
Sbjct: 42  RRTVPIRRGDKVEVMRGDFKGHVGKVENVDLKRYRVYVE 80


>gi|167540091|ref|XP_001733557.1| suppressor of ty [Entamoeba dispar SAW760]
 gi|165893855|gb|EDR21974.1| suppressor of ty, putative [Entamoeba dispar SAW760]
          Length = 727

 Score = 35.4 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE-------EKSRVHVEVV 158
           +   S++F VG+RV V+DG +A+  GI++ +         +K +  + V 
Sbjct: 370 KEDVSIYFNVGDRVKVTDGMYANETGIIEAIKGDEVFVFTDKKKASICVS 419


>gi|170120671|ref|XP_001891293.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164633285|gb|EDQ98056.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 403

 Score = 35.4 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 39/188 (20%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG------------- 51
           W +V V    E    E I  R+ R  +D   +    P                       
Sbjct: 92  WAVV-VKPGYE----EQIVFRIHRRLMDKRFSAHLRPPAVFGWKALPGRVFFEGGSKEII 146

Query: 52  -RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK-VIGFLGTG------------ENPSP 97
            +  N                   ++            ++G G                 
Sbjct: 147 RKVCNGISNVLASKTFNIPDPNPSIFTLPDTFQPKRHSWIGNGVKITDRDSRAGFGTIVD 206

Query: 98  VTDSEIEHIMNQVEAAVQRPVSS--VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           + D+E    +   +  +  P SS     +VG+ V +  G      G V  V+++   V V
Sbjct: 207 IKDNEAVVFLTTHDVTITVPFSSLRKHLKVGDEVRILLGDHQGVTGWV--VNQDDDYVEV 264

Query: 156 E---VVIF 160
               V  F
Sbjct: 265 SPGNVEFF 272


>gi|295135690|ref|YP_003586366.1| 50S ribosomal protein L24 [Zunongwangia profunda SM-A87]
 gi|294983705|gb|ADF54170.1| 50S ribosomal protein L24 [Zunongwangia profunda SM-A87]
          Length = 103

 Score = 35.4 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  + G+ V V  G      G V+ V  +K++  VE
Sbjct: 1   MAKLKIKSGDTVLVIAGDHKGQQGKVQKVFPDKNKAIVE 39


>gi|156087497|ref|XP_001611155.1| KOW motif family protein [Babesia bovis]
 gi|154798409|gb|EDO07587.1| KOW motif family protein [Babesia bovis]
          Length = 864

 Score = 35.4 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
               + EI+     +     +P   + +F+ G+ V + DG     +G++  VD EK    
Sbjct: 433 MHNDEIEIQPEDESIPNFKIQPSCVMKYFQEGDNVRIIDGINRGESGLISIVDFEKKTAV 492

Query: 155 V 155
           V
Sbjct: 493 V 493


>gi|1041015|gb|AAC44461.1| AnfA1 [Serratia entomophila]
          Length = 154

 Score = 35.4 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 1   MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
           M  +WY+++          +S+       G      + ++  E      +         +
Sbjct: 1   MKKKWYLIRCNYGKIDLGQKSLETYGLFEGFPAPNLKPSLEFEGFYLTFQKNFFRKGMVY 60

Query: 61  F-PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108
           F P Y+ ++  +       I+    V GF+  G     + D  I  IM 
Sbjct: 61  FSPPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGIKSIPDIVIGKIMK 109


>gi|316972420|gb|EFV56098.1| g patch domain and KOW motif proteins-containing protein
           [Trichinella spiralis]
          Length = 409

 Score = 35.4 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
           +  +    V V  G F    G + + D    RV V +        VEL+Y+ V
Sbjct: 352 IPRQEQSSVMVVCGKFCGQLGRIIHRDTRNCRVLVALA----ENTVELSYDDV 400


>gi|255570428|ref|XP_002526173.1| suppressor of ty, putative [Ricinus communis]
 gi|223534550|gb|EEF36249.1| suppressor of ty, putative [Ricinus communis]
          Length = 1045

 Score = 35.4 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV-----IFGR 162
           VG  V +  GPF  + G V  +      V VE+      I G+
Sbjct: 710 VGTTVKIRLGPFKGYRGRVVEIKGPS--VRVELESQMKVILGK 750


>gi|121703812|ref|XP_001270170.1| ribosomal protein L14 [Aspergillus clavatus NRRL 1]
 gi|119398314|gb|EAW08744.1| ribosomal protein L14 [Aspergillus clavatus NRRL 1]
          Length = 149

 Score = 35.4 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
           +     +       EVG  V +  GPF      V  + + K    V V 
Sbjct: 1   MADIDVKVAQWKLVEVGRVVLIRSGPFTGKLAAVVEIIDHK---RVLVD 46


>gi|324499705|gb|ADY39881.1| Transcription elongation factor SPT5 [Ascaris suum]
          Length = 1223

 Score = 35.4 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            E    + +     +    +  F  G+ V V+DG   +  G V++VD EK  V V 
Sbjct: 529 QETTDDLKKELEGTRVKERAYTFAPGDYVEVADGELVNLRGRVQSVDGEK--VVVL 582


>gi|66806925|ref|XP_637185.1| hypothetical protein DDB_G0287551 [Dictyostelium discoideum AX4]
 gi|60465593|gb|EAL63675.1| hypothetical protein DDB_G0287551 [Dictyostelium discoideum AX4]
          Length = 455

 Score = 35.4 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 5/140 (3%)

Query: 13  NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72
           N E+K    +  R+        + +    +    +++       E + + G    K  M 
Sbjct: 141 NFERKVPNWVCQRIEIQDFKEKIADRKHCNFNNNTIQVPHHFKQENKDYWGSGWSKGHMV 200

Query: 73  DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132
               +          FL          ++              + ++         V + 
Sbjct: 201 PAGDNIKSQESMCQTFLLNSNIVPQDLNNNQNFWYRLESFCKNQLINRFK-----SVTII 255

Query: 133 DGPFASFNGIVKNVDEEKSR 152
            GP      +++ +DE++ +
Sbjct: 256 SGPIYHHPNLIEQLDEDQLK 275


>gi|315229868|ref|YP_004070304.1| 50S ribosomal protein L26e (L24p) [Thermococcus barophilus MP]
 gi|315182896|gb|ADT83081.1| LSU ribosomal protein L26e (L24p) [Thermococcus barophilus MP]
          Length = 120

 Score = 35.4 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               G++V +  G +    G V  VD ++ R++VE
Sbjct: 45  PIRTGDKVRIMRGDYKGIEGKVVEVDLKRYRIYVE 79


>gi|89891141|ref|ZP_01202649.1| 50S ribosomal protein L24 (rplX) [Flavobacteria bacterium BBFL7]
 gi|89516785|gb|EAS19444.1| 50S ribosomal protein L24 (rplX) [Flavobacteria bacterium BBFL7]
          Length = 103

 Score = 35.4 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  V  + G++V V  G      G++  + ++K++  VE
Sbjct: 1   MVKVKIKTGDKVRVLAGEHKGSEGVITRIFKDKNKAIVE 39


>gi|294938792|ref|XP_002782201.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239893699|gb|EER13996.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 1267

 Score = 35.4 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           VG+ V V+ G   +  G V  +D ++ RV+V
Sbjct: 503 VGDSVVVNGGDMKNLRGRVVTIDTDRRRVNV 533


>gi|84494775|ref|ZP_00993894.1| 50S ribosomal protein L24 [Janibacter sp. HTCC2649]
 gi|84384268|gb|EAQ00148.1| 50S ribosomal protein L24 [Janibacter sp. HTCC2649]
          Length = 115

 Score = 35.4 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++    + G+ V V  G      G V +VD EK+RV VE
Sbjct: 1   MAKFGIKKGDTVQVLTGKDKGSTGKVISVDREKNRVLVE 39


>gi|86132555|ref|ZP_01051148.1| 50S ribosomal protein L24 [Dokdonia donghaensis MED134]
 gi|85816797|gb|EAQ37982.1| 50S ribosomal protein L24 [Dokdonia donghaensis MED134]
          Length = 103

 Score = 35.4 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  + G+ V V  G      G V  V  EK++  VE
Sbjct: 1   MTKLKIKTGDTVKVIAGDHKGSEGKVVKVFIEKNKAIVE 39


>gi|328869147|gb|EGG17525.1| transcription initiation factor Spt5 [Dictyostelium fasciculatum]
          Length = 1072

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDE 148
           ++ F  G+ V V +G      G V+++D+
Sbjct: 435 TIQFTKGDTVKVIEGDLKGLMGKVESIDD 463


>gi|73947650|ref|XP_867118.1| PREDICTED: similar to suppressor of Ty 5 homolog isoform 2 [Canis
           familiaris]
          Length = 1093

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
           +  V  + +       F+ G+ V V +G   +  G + +VD  K
Sbjct: 411 LEVVTESTEDGEREHNFQPGDNVEVCEGELINLQGKILSVDGNK 454


>gi|296414111|ref|XP_002836746.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295631585|emb|CAZ80937.1| unnamed protein product [Tuber melanosporum]
          Length = 771

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 1/143 (0%)

Query: 16  KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75
           K  ++++  R   S +  +   + I  ++ V                 Y  + +      
Sbjct: 177 KAVMKALRKRGRHSEIPDIFHRMHIAGQKHVDTYALNICLEAYIEMGMYSKVISTYRHHR 236

Query: 76  YHTIKDTPKVIGFLGTGENPSPVTDSEIE-HIMNQVEAAVQRPVSSVFFEVGERVCVSDG 134
                D   +   L        +  +E     + + E       S++F  +   V +  G
Sbjct: 237 PRVRPDIQTMRHRLRNLIAMRKLHQAEKLLRRLLREEGPPWMADSTMFALLLGGVKIISG 296

Query: 135 PFASFNGIVKNVDEEKSRVHVEV 157
            F     I K + E + ++HV V
Sbjct: 297 SFHRMERIFKWMAESRVKLHVGV 319


>gi|84489696|ref|YP_447928.1| 50S ribosomal protein L24P [Methanosphaera stadtmanae DSM 3091]
 gi|109893290|sp|Q2NFW8|RL24_METST RecName: Full=50S ribosomal protein L24P
 gi|84373015|gb|ABC57285.1| 50S ribosomal protein L24P [Methanosphaera stadtmanae DSM 3091]
          Length = 117

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            +    S     G+ V +  G F    G V+ VD +  RV V
Sbjct: 34  EEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLV 75


>gi|126178525|ref|YP_001046490.1| 50S ribosomal protein L24P [Methanoculleus marisnigri JR1]
 gi|166222072|sp|A3CT08|RL24_METMJ RecName: Full=50S ribosomal protein L24P
 gi|125861319|gb|ABN56508.1| LSU ribosomal protein L24P [Methanoculleus marisnigri JR1]
          Length = 121

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
            G+ V V  G FA   G+V  VD +  R+ V
Sbjct: 49  KGDTVKVLRGDFAGDEGVVDAVDMKACRLVV 79


>gi|126460353|ref|YP_001056631.1| 50S ribosomal protein L24P [Pyrobaculum calidifontis JCM 11548]
 gi|166222095|sp|A3MWZ8|RL24_PYRCJ RecName: Full=50S ribosomal protein L24P
 gi|126250074|gb|ABO09165.1| LSU ribosomal protein L24P [Pyrobaculum calidifontis JCM 11548]
          Length = 128

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V +  G F    G V  VD ++ R+ VE
Sbjct: 50  GDTVLIMRGDFKGVTGKVVKVDLKRVRIFVE 80


>gi|325116289|emb|CBZ51842.1| putative ribosomal protein L24 [Neospora caninum Liverpool]
          Length = 237

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
             +++ A       +  EVG+ V V  GP     G+V +++++++ V V
Sbjct: 41  REKLQPAPIDLSYYLNMEVGDLVEVLHGPDCGRQGVVLSINKKRNTVIV 89


>gi|67642501|ref|ZP_00441257.1| cardiolipin synthetase YbhO [Burkholderia mallei GB8 horse 4]
 gi|121599944|ref|YP_994046.1| cardiolipin synthetase ybhO [Burkholderia mallei SAVP1]
 gi|167001910|ref|ZP_02267700.1| cardiolipin synthetase ybhO [Burkholderia mallei PRL-20]
 gi|254176706|ref|ZP_04883363.1| cardiolipin synthetase ybhO [Burkholderia mallei ATCC 10399]
 gi|254203716|ref|ZP_04910076.1| cardiolipin synthetase ybhO [Burkholderia mallei FMH]
 gi|254208691|ref|ZP_04915039.1| cardiolipin synthetase ybhO [Burkholderia mallei JHU]
 gi|121228754|gb|ABM51272.1| cardiolipin synthetase ybhO [Burkholderia mallei SAVP1]
 gi|147745228|gb|EDK52308.1| cardiolipin synthetase ybhO [Burkholderia mallei FMH]
 gi|147750567|gb|EDK57636.1| cardiolipin synthetase ybhO [Burkholderia mallei JHU]
 gi|160697747|gb|EDP87717.1| cardiolipin synthetase ybhO [Burkholderia mallei ATCC 10399]
 gi|238523666|gb|EEP87103.1| cardiolipin synthetase YbhO [Burkholderia mallei GB8 horse 4]
 gi|243062319|gb|EES44505.1| cardiolipin synthetase ybhO [Burkholderia mallei PRL-20]
          Length = 424

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGETRHRLAQLRQMFLQERGSASRLAFTSGNEVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|306824441|ref|ZP_07457787.1| P-ATPase superfamily cation transporter ATPase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433228|gb|EFM36198.1| P-ATPase superfamily cation transporter ATPase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 761

 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115
           FF  Y  +     M     H  +   +++    + +  +   D E+    +++       
Sbjct: 383 FFGAYEFLGFTQAMDAYYEHLKQQGFRILSLAHSKDQITSPDDMELLGHVVLSDEIKDNT 442

Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159
           + +   F   G  V +  G            A F    + +D  K       RV +E  I
Sbjct: 443 KEIFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSDEDFERVVLEHDI 502

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGRVTP      Q +K+V
Sbjct: 503 FGRVTP-----EQKQKMV 515


>gi|297569411|ref|YP_003690755.1| ribosomal protein L24 [Desulfurivibrio alkaliphilus AHT2]
 gi|296925326|gb|ADH86136.1| ribosomal protein L24 [Desulfurivibrio alkaliphilus AHT2]
          Length = 111

 Score = 35.0 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
               +V +RV V  G      G V  +D ++ R  V+ + +  R T 
Sbjct: 5   KTHIKVNDRVEVIAGGDKGRVGKVIRIDRKRGRAVVDKINMIKRHTK 51


>gi|224011806|ref|XP_002294556.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969576|gb|EED87916.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 420

 Score = 35.0 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQ 172
                + +  E GE+V + +G +      ++ +D+ K R  +  V        VEL Y  
Sbjct: 359 QDDLETVIPKETGEKVRILNGKYRGKKARLEKLDKTKYRAELRLVD---DDRIVELDYED 415

Query: 173 VEKI 176
             K+
Sbjct: 416 FSKL 419


>gi|209867662|gb|ACI90350.1| T54 protein-like protein [Philodina roseola]
          Length = 384

 Score = 35.0 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG---RVTPVELAYNQVEKI 176
            E G  V +  GP+A   G ++ ++E+ SR+ V + I G   +   + ++   V+ +
Sbjct: 244 MEKGAFVLIEKGPYADQYGTIECIEEDVSRLTVALAISGTNKKKQTISISQYHVKLV 300


>gi|39971719|ref|XP_367250.1| hypothetical protein MGG_07175 [Magnaporthe oryzae 70-15]
 gi|145019659|gb|EDK03887.1| hypothetical protein MGG_07175 [Magnaporthe oryzae 70-15]
          Length = 403

 Score = 35.0 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRV 153
           VG+RV V +GPF      +  ++ ++  +
Sbjct: 136 VGDRVVVIEGPFKGQISTISQIEHDRGVL 164


>gi|329954527|ref|ZP_08295618.1| transcription termination/antitermination factor NusG
          [Bacteroides clarus YIT 12056]
 gi|328527495|gb|EGF54492.1| transcription termination/antitermination factor NusG
          [Bacteroides clarus YIT 12056]
          Length = 107

 Score = 35.0 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 1  MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60
          M+ RW  +      E+K    +  RL+ +G          P + V    KG+        
Sbjct: 7  MS-RWCALHTAPKSERK----LMQRLNAAG-----YTAFCPMQIVFKKWKGQTKEVFAPL 56

Query: 61 FPGYVLIK 68
          FPG V ++
Sbjct: 57 FPGCVFVE 64


>gi|166031648|ref|ZP_02234477.1| hypothetical protein DORFOR_01348 [Dorea formicigenerans ATCC
           27755]
 gi|166028625|gb|EDR47382.1| hypothetical protein DORFOR_01348 [Dorea formicigenerans ATCC
           27755]
          Length = 103

 Score = 35.0 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
           + G+ V V  G      G V  VD +  RV VE V +  + T 
Sbjct: 7   KKGDTVKVIAGKDKDKEGKVIAVDHKNGRVTVEGVNMLTKHTK 49


>gi|315611908|ref|ZP_07886827.1| cation-transporting ATPase [Streptococcus sanguinis ATCC 49296]
 gi|315316086|gb|EFU64119.1| cation-transporting ATPase [Streptococcus sanguinis ATCC 49296]
          Length = 761

 Score = 35.0 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115
           FF  Y  +     M     H  +   +++    + ++ +   + E+    I++       
Sbjct: 383 FFGAYEFLGFTQPMDAYYEHLKQQGFRILTLAHSKDHITSPANMELLGHVILSDEIKDNT 442

Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159
           +     F   G  V +  G            A F    + +D  K       RV +E  I
Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSDDDFERVVLEHEI 502

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGRVTP      Q EK+V
Sbjct: 503 FGRVTP-----EQKEKMV 515


>gi|303243490|ref|ZP_07329832.1| ribosomal protein L24 [Methanothermococcus okinawensis IH1]
 gi|302486051|gb|EFL48973.1| ribosomal protein L24 [Methanothermococcus okinawensis IH1]
          Length = 120

 Score = 35.0 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               G+ V +  G F +  G V  VD +  +++VE
Sbjct: 46  PVRKGDVVKIMRGNFKNIEGEVSKVDYKSYKIYVE 80


>gi|257387887|ref|YP_003177660.1| ribosomal protein L24 [Halomicrobium mukohataei DSM 12286]
 gi|257170194|gb|ACV47953.1| ribosomal protein L24 [Halomicrobium mukohataei DSM 12286]
          Length = 120

 Score = 35.0 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    SV    G+ V V  G +A   G V  VD + + ++VE
Sbjct: 34  EEYDQRSVRVNAGDTVEVLRGDYAGEEGEVVEVDLDDAAIYVE 76


>gi|167561590|ref|ZP_02354506.1| cardiolipin synthetase II [Burkholderia oklahomensis EO147]
          Length = 424

 Score = 35.0 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D+ + RV +
Sbjct: 1   MSGKTRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDDARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|325188020|emb|CCA22563.1| 39S ribosomal protein L24 putative [Albugo laibachii Nc14]
          Length = 169

 Score = 35.0 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V V +GP     G +  V  ++++V VE
Sbjct: 31  GDFVEVINGPHKGKQGEIVGVIRDQNKVIVE 61


>gi|303390188|ref|XP_003073325.1| 60S ribosomal protein L26 [Encephalitozoon intestinalis ATCC 50506]
 gi|303302471|gb|ADM11965.1| 60S ribosomal protein L26 [Encephalitozoon intestinalis ATCC 50506]
          Length = 143

 Score = 35.0 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
             +   + G+ V V  G F    G++ +++ E  +V+VE
Sbjct: 45  FRTFPLKSGDTVLVKGGKFDGKEGVITSINYEDYKVYVE 83


>gi|297619577|ref|YP_003707682.1| ribosomal protein L24 [Methanococcus voltae A3]
 gi|297378554|gb|ADI36709.1| ribosomal protein L24 [Methanococcus voltae A3]
          Length = 119

 Score = 35.0 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           +S+  + G+ V V  G F    G V +V+ +   V V
Sbjct: 43  NSIPLKKGDLVKVMRGNFKGVEGEVTSVNYKNYNVVV 79


>gi|332170570|gb|AEE19825.1| ribosomal protein L24 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 103

 Score = 35.0 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  + G+ V V  G      G V  V  EK++  VE
Sbjct: 1   MTKLKIKTGDTVKVIAGDHKGSEGKVVKVFIEKNKAIVE 39


>gi|313673871|ref|YP_004051982.1| crispr-associated protein cas5 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940627|gb|ADR19819.1| CRISPR-associated protein Cas5 [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 224

 Score = 35.0 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           +I+ + SN E K  E I        ++ L+ +I I +      +      SE +    Y+
Sbjct: 95  HIIHIESNFENKINECIDKATRLGRMEDLINKIEIIT--SSEKKSNSCDLSEIKNLNYYI 152

Query: 66  LIKAV 70
            +   
Sbjct: 153 YVPFD 157


>gi|240973532|ref|XP_002401490.1| G patch domain and KOW motifs-containing protein, putative [Ixodes
           scapularis]
 gi|215491031|gb|EEC00672.1| G patch domain and KOW motifs-containing protein, putative [Ixodes
           scapularis]
          Length = 266

 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154
           +++    V +    +    G  V +  G F    G V+ +D++  RV 
Sbjct: 216 LSKPPPLVAKEEGDLVLRRGAYVRIEQGQFKDMYGQVEGLDDDNGRVI 263


>gi|171186000|ref|YP_001794919.1| 50S ribosomal protein L24P [Thermoproteus neutrophilus V24Sta]
 gi|170935212|gb|ACB40473.1| ribosomal protein L24 [Thermoproteus neutrophilus V24Sta]
          Length = 122

 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V +  G F    G V  VD ++ R++VE
Sbjct: 50  GDTVLILRGDFKGVTGKVVRVDLKRVRIYVE 80


>gi|312065458|ref|XP_003135800.1| hypothetical protein LOAG_00212 [Loa loa]
 gi|307769021|gb|EFO28255.1| hypothetical protein LOAG_00212 [Loa loa]
          Length = 1409

 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
            E    + +    ++    S  F  G+ V V DG   +  G V+NVD EK
Sbjct: 722 QETSDDLKKELEGMKVKDLSYIFSPGDYVEVMDGELVNLRGRVQNVDGEK 771


>gi|312079500|ref|XP_003142201.1| KOW domain-containing protein family protein [Loa loa]
 gi|307762634|gb|EFO21868.1| KOW domain-containing protein family protein [Loa loa]
          Length = 279

 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 11/154 (7%)

Query: 25  RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84
           R  R     L     +P E V  V++          +    +++  +    Y      P 
Sbjct: 9   RSVRRTYMELDYARHMPKEYVEKVKRTVPKKIYTNRYGAPDIVRWTLHPDDYVPTDGRPW 68

Query: 85  VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE-----VGERVCVSDGPFASF 139
                   +N     D     + ++          ++  E      G+ V V  G     
Sbjct: 69  --ELDAFEKNIQRAHDYHQHKLRHRFFELRHEEKVAIPAEEWTIFPGDLVQVMVGKDRGK 126

Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173
            G+V +V++E + V V     GR T +   Y  +
Sbjct: 127 TGVVSHVNKETNAVFVR----GRHTKLVNDYENL 156


>gi|297567273|ref|YP_003686245.1| 50S ribosomal protein L24 [Meiothermus silvanus DSM 9946]
 gi|296851722|gb|ADH64737.1| ribosomal protein L24 [Meiothermus silvanus DSM 9946]
          Length = 113

 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
             S +  + G+ V V  G      G VK V   K  V VE V I  +   
Sbjct: 2   EKSKIHVKKGDTVVVVSGSHKGEKGKVKAVLPSKQAVIVEGVNIIKKAVR 51


>gi|126465927|ref|YP_001041036.1| 50S ribosomal protein L24P [Staphylothermus marinus F1]
 gi|218547136|sp|A3DNB8|RL24_STAMF RecName: Full=50S ribosomal protein L24P
 gi|126014750|gb|ABN70128.1| LSU ribosomal protein L24P [Staphylothermus marinus F1]
          Length = 152

 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    G+ V +  G +    G V  +D  + R++VE
Sbjct: 44  KLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVE 80


>gi|282880290|ref|ZP_06289004.1| transcription termination/antitermination factor NusG [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305792|gb|EFA97838.1| transcription termination/antitermination factor NusG [Prevotella
           timonensis CRIS 5C-B1]
          Length = 204

 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY +++++   ++ ++ +        LD+ +    +     V  RK R     R      
Sbjct: 33  WYALRLFTLKTQQVIDYLEE----HHLDYFIPMEYVD----VEDRKHRVQQKLRPVVRNL 84

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF- 123
           + IK  M++     I  T          ++       EI         A+  P   +   
Sbjct: 85  IFIKRTMSELSIRKIL-TEAPFKGSVIRKSREDSQYYEIPSRQMFEFQAMCNPEIVMRQY 143

Query: 124 --------EVGERVCVSDGPFASFNGIVKNVD 147
                   +VG  V V  GP    +G +   +
Sbjct: 144 LSEAQAKLKVGTPVYVKYGPLKGLSGRLVRSN 175


>gi|262384935|ref|ZP_06078051.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|262293430|gb|EEY81382.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
          Length = 172

 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160
            G+RV ++ GPF      V  V        V V I 
Sbjct: 28  KGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 62


>gi|301098838|ref|XP_002898511.1| 39S ribosomal protein L24, mitochondrial, putative [Phytophthora
           infestans T30-4]
 gi|262104936|gb|EEY62988.1| 39S ribosomal protein L24, mitochondrial, putative [Phytophthora
           infestans T30-4]
          Length = 166

 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           G++V +  GP     G V +V  + ++V VE V +
Sbjct: 31  GDKVEIIAGPHKGTQGEVVSVVRDLNKVIVENVNM 65


>gi|66504222|ref|XP_392212.2| PREDICTED: probable 39S ribosomal protein L24, mitochondrial [Apis
           mellifera]
          Length = 253

 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%)

Query: 71  MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVC 130
              K     +          +   P   + S       + E     P+    F  G+RV 
Sbjct: 38  PPGKPQFLPRKIVSRKKLHFSIHRPWTTSFSIENWFKKRREYIPIEPIKDWSFFRGDRVE 97

Query: 131 VSDGPFASFNGIVKNVDEEKSRVHV 155
           V  GP     GIV+++ +E++ + V
Sbjct: 98  VLTGPDKGKQGIVQDIIQERNWIIV 122


>gi|167835475|ref|ZP_02462358.1| cardiolipin synthetase II [Burkholderia thailandensis MSMB43]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGRTRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|255946077|ref|XP_002563806.1| Pc20g13260 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588541|emb|CAP86655.1| Pc20g13260 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 148

 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
           +     +  S    EVG  V +  GPF      +  + + +    V V 
Sbjct: 1   MADIDVKVSSWKLVEVGRLVLIRSGPFEGKLAAIVEIVDHR---RVLVD 46


>gi|323474760|gb|ADX85366.1| ribosomal protein L24 [Sulfolobus islandicus REY15A]
 gi|323477488|gb|ADX82726.1| ribosomal protein L24 [Sulfolobus islandicus HVE10/4]
          Length = 119

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    G+ V V  G      G V  ++    R+ +E
Sbjct: 41  RIRVRKGDTVRVMRGSHNGKEGKVTEINTRTGRLAIE 77


>gi|298530492|ref|ZP_07017894.1| peptidase M20 [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509866|gb|EFI33770.1| peptidase M20 [Desulfonatronospira thiodismutans ASO3-1]
          Length = 383

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 3/121 (2%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           +   S  EK     I   L + G +    E+    E   ++         + +  G+V  
Sbjct: 27  IYSPSGKEKDVQVYIEDWLKKEGFEVTRQEV---EEDRFNLLLTMGPKDPQVYLVGHVDT 83

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
            A          +    V G              E    + +     +RP   +   VGE
Sbjct: 84  VADWDFDEEGPYEQGGIVRGLGSADMKGGCAAMVETWMALARAFEPAERPPVGLALVVGE 143

Query: 128 R 128
            
Sbjct: 144 E 144


>gi|126438537|ref|YP_001057730.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 668]
 gi|126218030|gb|ABN81536.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 668]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGETRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|124383902|ref|YP_001028290.1| cardiolipin synthetase II [Burkholderia mallei NCTC 10229]
 gi|126448273|ref|YP_001081934.1| cardiolipin synthetase ybhO [Burkholderia mallei NCTC 10247]
 gi|254360253|ref|ZP_04976523.1| cardiolipin synthetase ybhO [Burkholderia mallei 2002721280]
 gi|124291922|gb|ABN01191.1| cardiolipin synthetase II [Burkholderia mallei NCTC 10229]
 gi|126241143|gb|ABO04236.1| cardiolipin synthetase ybhO [Burkholderia mallei NCTC 10247]
 gi|148029493|gb|EDK87398.1| cardiolipin synthetase ybhO [Burkholderia mallei 2002721280]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGETRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|53718289|ref|YP_107275.1| putative phospholipase [Burkholderia pseudomallei K96243]
 gi|76808915|ref|YP_332267.1| cardiolipin synthetase II [Burkholderia pseudomallei 1710b]
 gi|126454347|ref|YP_001064975.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106a]
 gi|134279487|ref|ZP_01766199.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 305]
 gi|167718150|ref|ZP_02401386.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei DM98]
 gi|167737179|ref|ZP_02409953.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 14]
 gi|167814312|ref|ZP_02445992.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 91]
 gi|167822788|ref|ZP_02454259.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 9]
 gi|167844363|ref|ZP_02469871.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei B7210]
 gi|167892875|ref|ZP_02480277.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 7894]
 gi|167901361|ref|ZP_02488566.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei NCTC 13177]
 gi|167909591|ref|ZP_02496682.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 112]
 gi|167917606|ref|ZP_02504697.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei BCC215]
 gi|217419518|ref|ZP_03451024.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 576]
 gi|226196675|ref|ZP_03792255.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei Pakistan 9]
 gi|237810880|ref|YP_002895331.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei MSHR346]
 gi|242316076|ref|ZP_04815092.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106b]
 gi|254181769|ref|ZP_04888366.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1655]
 gi|254187699|ref|ZP_04894211.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196701|ref|ZP_04903125.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei S13]
 gi|254261391|ref|ZP_04952445.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1710a]
 gi|254296189|ref|ZP_04963646.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 406e]
 gi|52208703|emb|CAH34639.1| putative phospholipase [Burkholderia pseudomallei K96243]
 gi|76578368|gb|ABA47843.1| cardiolipin synthetase II [Burkholderia pseudomallei 1710b]
 gi|126227989|gb|ABN91529.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106a]
 gi|134248687|gb|EBA48769.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 305]
 gi|157805786|gb|EDO82956.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 406e]
 gi|157935379|gb|EDO91049.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653444|gb|EDS86137.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei S13]
 gi|184212307|gb|EDU09350.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1655]
 gi|217396822|gb|EEC36838.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 576]
 gi|225931206|gb|EEH27213.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei Pakistan 9]
 gi|237503507|gb|ACQ95825.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei MSHR346]
 gi|242139315|gb|EES25717.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106b]
 gi|254220080|gb|EET09464.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1710a]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGETRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|167568826|ref|ZP_02361700.1| cardiolipin synthetase II [Burkholderia oklahomensis C6786]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGKTRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|18313979|ref|NP_560646.1| 50S ribosomal protein L24P [Pyrobaculum aerophilum str. IM2]
 gi|46397697|sp|Q8ZTD4|RL24_PYRAE RecName: Full=50S ribosomal protein L24P
 gi|18161554|gb|AAL64828.1| ribosomal protein L24 [Pyrobaculum aerophilum str. IM2]
          Length = 123

 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G+ V +  G F    G V  VD ++ R++VE
Sbjct: 50  GDTVLILRGDFKGVTGKVVKVDLKRVRIYVE 80


>gi|224105299|ref|XP_002313759.1| global transcription factor group [Populus trichocarpa]
 gi|222850167|gb|EEE87714.1| global transcription factor group [Populus trichocarpa]
          Length = 1042

 Score = 34.6 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
           VG  + V  GPF  + G V ++      V VE+ 
Sbjct: 702 VGTTIKVRQGPFKGYRGRVVDIKG--QFVRVELE 733


>gi|167579869|ref|ZP_02372743.1| cardiolipin synthetase II [Burkholderia thailandensis TXDOH]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGKARHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|83719800|ref|YP_441119.1| cardiolipin synthetase II [Burkholderia thailandensis E264]
 gi|257140219|ref|ZP_05588481.1| cardiolipin synthetase II [Burkholderia thailandensis E264]
 gi|83653625|gb|ABC37688.1| cardiolipin synthetase II [Burkholderia thailandensis E264]
          Length = 424

 Score = 34.6 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 96  SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
                      + Q+    +   S + F  G  V + DG  A F  +++ +D  + RV +
Sbjct: 1   MSGKARHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60

Query: 156 EVVIF-----GRVTP 165
           E  IF     GR   
Sbjct: 61  ETYIFCDDAVGRAVS 75


>gi|163752906|ref|ZP_02160030.1| LSU ribosomal protein L24P [Kordia algicida OT-1]
 gi|161326638|gb|EDP97963.1| LSU ribosomal protein L24P [Kordia algicida OT-1]
          Length = 103

 Score = 34.6 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           ++ +  + G+ V V  G      G V  V  EK++  VE V +
Sbjct: 1   MTKLKIKSGDTVRVIAGDHKGSEGKVLTVLREKNKAIVEGVNM 43


>gi|291228206|ref|XP_002734070.1| PREDICTED: G patch domain and KOW motifs-like [Saccoglossus
           kowalevskii]
          Length = 515

 Score = 34.6 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159
                  F  G  V V+ GP  +  G ++ VDE+ SRV V+  I
Sbjct: 230 EEEEPQGFARGVGVLVASGPHKNLYGKIEGVDEDNSRVLVKFAI 273


>gi|145343619|ref|XP_001416414.1| kin17-like protein [Ostreococcus lucimarinus CCE9901]
 gi|144576639|gb|ABO94707.1| kin17-like protein [Ostreococcus lucimarinus CCE9901]
          Length = 327

 Score = 34.6 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
            +V   +G  + V  G  A   G V +VD     + V +   G       ++  V K+
Sbjct: 260 RTVIPAIGASIKVIRGENAGCIGSVISVDASGGSLRVLLEGSGDEMN-TFSFEDVSKL 316


>gi|147919322|ref|YP_686942.1| 50S ribosomal protein L24P [uncultured methanogenic archaeon RC-I]
 gi|121682876|sp|Q0W1X7|RL24_UNCMA RecName: Full=50S ribosomal protein L24P
 gi|110622338|emb|CAJ37616.1| 50S ribosomal protein L24P [uncultured methanogenic archaeon RC-I]
          Length = 123

 Score = 34.6 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
              ++   +    VG+ V V  G  A   G V+ +D ++ +V VE
Sbjct: 39  ELSKKYGRTARVIVGDTVKVMRGDAAGTEGKVREIDVKREKVVVE 83


>gi|242095074|ref|XP_002438027.1| hypothetical protein SORBIDRAFT_10g006840 [Sorghum bicolor]
 gi|241916250|gb|EER89394.1| hypothetical protein SORBIDRAFT_10g006840 [Sorghum bicolor]
          Length = 1025

 Score = 34.6 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166
           VG+ + +  GP+  + G VK V    + V VE+    ++  V
Sbjct: 701 VGKCIKIKSGPYKGYRGRVKEVTG--ALVRVELDSLMKIVTV 740


>gi|170290957|ref|YP_001737773.1| NusG antitermination factor [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175037|gb|ACB08090.1| NusG antitermination factor [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 159

 Score = 34.6 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 31/145 (21%)

Query: 8   VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67
           V+V S  E   +  +  R+S +G                      +       F  Y+ +
Sbjct: 11  VRVISGKEINIMRLLVSRVSSTG-------------------AKVRSIIFVPKFKNYLFV 51

Query: 68  KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127
           +A   ++ Y   K    +        +P P  + E           +    + +  E G+
Sbjct: 52  EA---EREYEVRKLIAGLSKLRLASSSPVPPQEIE---------DILSSETAGMEIEPGD 99

Query: 128 RVCVSDGPFASFNGIVKNVDEEKSR 152
            V +  G F  +  +V    E KS+
Sbjct: 100 IVKIIKGNFKGYRAVVIATPEGKSK 124


>gi|170580854|ref|XP_001895436.1| Micro-fibrillar-associated protein 1 C-terminus containing protein
           [Brugia malayi]
 gi|158597624|gb|EDP35722.1| Micro-fibrillar-associated protein 1 C-terminus containing protein
           [Brugia malayi]
          Length = 1533

 Score = 34.6 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150
            E    + +    ++    S  F  G+ V V+DG   +  G V++VD EK
Sbjct: 408 QETSDDLKKELEGMKVKDLSCIFSPGDYVEVADGELVNLRGRVQSVDGEK 457


>gi|146298150|ref|YP_001192741.1| ribosomal protein L24 [Flavobacterium johnsoniae UW101]
 gi|189042323|sp|A5FMY9|RL24_FLAJO RecName: Full=50S ribosomal protein L24
 gi|146152568|gb|ABQ03422.1| ribosomal protein L24 [Flavobacterium johnsoniae UW101]
          Length = 104

 Score = 34.6 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  +  + G+ V V  G      G V  V  EK++  VE
Sbjct: 1   MIKLKIKSGDIVRVIAGDHKGAEGKVLRVYREKNKAIVE 39


>gi|126662253|ref|ZP_01733252.1| 50S ribosomal protein L24 [Flavobacteria bacterium BAL38]
 gi|126625632|gb|EAZ96321.1| 50S ribosomal protein L24 [Flavobacteria bacterium BAL38]
          Length = 104

 Score = 34.6 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
           +  +  + G+ V V  G      G +  V  EK++  VE V +  + T 
Sbjct: 1   MIKLKIKSGDVVRVIAGDHKGSEGKIVRVLREKNKAIVEGVNMVSKHTK 49


>gi|302841412|ref|XP_002952251.1| plastid/chloroplast ribosomal protein L24 [Volvox carteri f.
           nagariensis]
 gi|300262516|gb|EFJ46722.1| plastid/chloroplast ribosomal protein L24 [Volvox carteri f.
           nagariensis]
          Length = 178

 Score = 34.6 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 67  IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
           +    T         T  V+   G           E       +  + +     +  + G
Sbjct: 17  VATGRTAAPRRLAPTTTHVVAAYGDLPKIGGGRKWEHFE----LGPSGKAVRVDMHVKKG 72

Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           + V V  G      G +  V  +K +V VE
Sbjct: 73  DTVQVIAGKDKGKVGTIVKVLAKKGKVVVE 102


>gi|302801361|ref|XP_002982437.1| hypothetical protein SELMODRAFT_38165 [Selaginella moellendorffii]
 gi|300150029|gb|EFJ16682.1| hypothetical protein SELMODRAFT_38165 [Selaginella moellendorffii]
          Length = 153

 Score = 34.6 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G++V +  G      G VK V  ++++V VE
Sbjct: 18  GDKVKIITGNDKGLTGTVKEVFRKRNKVIVE 48


>gi|270292062|ref|ZP_06198277.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. M143]
 gi|270279590|gb|EFA25432.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. M143]
          Length = 761

 Score = 34.6 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 25/138 (18%)

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115
           FF  Y  +     M     H  +   +++    + ++ +  ++ E+    +++       
Sbjct: 383 FFGAYEFLGFTQPMDAYYEHLKQQGFRILTLAHSKDHITSPSEMELLGHVVLSDEIKDNT 442

Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159
           +     F   G  V +  G            A F    + +D  K       RV +E  I
Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSDDDFERVVLEHEI 502

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGRVTP      Q +K+V
Sbjct: 503 FGRVTP-----EQKQKMV 515


>gi|132819|sp|P11893|RK24_PEA RecName: Full=50S ribosomal protein L24, chloroplastic; AltName:
           Full=CL24; Flags: Precursor
 gi|20873|emb|CAA32185.1| unnamed protein product [Pisum sativum]
          Length = 194

 Score = 34.6 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 21/74 (28%)

Query: 82  TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141
           T          E    +          + +      +  +  +VG+ V V  G      G
Sbjct: 32  TLSPFLQGKPTEKKCLIVMKLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQIG 91

Query: 142 IVKNVDEEKSRVHV 155
            +  + +  S V V
Sbjct: 92  EITKIFKHNSSVIV 105


>gi|325958543|ref|YP_004290009.1| 50S ribosomal protein L24 [Methanobacterium sp. AL-21]
 gi|325329975|gb|ADZ09037.1| ribosomal protein L24 [Methanobacterium sp. AL-21]
          Length = 117

 Score = 34.6 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            Q    S+  + G+ + V  G F    G ++ VD +  RV +E
Sbjct: 34  EQYKRRSLPVKKGDTIKVMRGDFKDHEGKIEKVDLKNYRVMIE 76


>gi|224100723|ref|XP_002311988.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa]
 gi|222851808|gb|EEE89355.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa]
          Length = 1853

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 58  RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA--VQ 115
           +  F  Y L+     D       +  +    L  G     V    +  + N         
Sbjct: 402 QNRFELYDLVCFGRKDFGLIVGMEKDESYKILKHGPEKPDVVTVALRDLKNGPTDMKFTA 461

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146
                    V + V V +GP     GIVK +
Sbjct: 462 LDHHKKTMSVNDTVKVLEGPLKDRQGIVKQI 492


>gi|330850872|ref|YP_004376622.1| 50S ribosomal protein L24 [Fistulifera sp. JPCC DA0580]
 gi|328835692|dbj|BAK18988.1| 50S ribosomal protein L24 [Fistulifera sp. JPCC DA0580]
          Length = 82

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
             +  +VG+ V V  G   +  G V  ++    ++ V
Sbjct: 5   QKIHVKVGDTVRVISGFSKNETGEVLRINRNTGKLIV 41


>gi|227827702|ref|YP_002829482.1| 50S ribosomal protein L24P [Sulfolobus islandicus M.14.25]
 gi|229584906|ref|YP_002843408.1| 50S ribosomal protein L24P [Sulfolobus islandicus M.16.27]
 gi|238619873|ref|YP_002914699.1| 50S ribosomal protein L24P [Sulfolobus islandicus M.16.4]
 gi|227459498|gb|ACP38184.1| ribosomal protein L24 [Sulfolobus islandicus M.14.25]
 gi|228019956|gb|ACP55363.1| ribosomal protein L24 [Sulfolobus islandicus M.16.27]
 gi|238380943|gb|ACR42031.1| ribosomal protein L24 [Sulfolobus islandicus M.16.4]
          Length = 119

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    G+ V V  G      G V  ++    R+ +E
Sbjct: 41  RIRVRKGDTVRVMRGSHNGKEGKVTEINTRTGRLAIE 77


>gi|325955003|ref|YP_004238663.1| ribosomal protein L24 [Weeksella virosa DSM 16922]
 gi|323437621|gb|ADX68085.1| ribosomal protein L24 [Weeksella virosa DSM 16922]
          Length = 104

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           ++ +  + G+ V V  G      G V  V   K++  VE V I
Sbjct: 1   MAKLKIKKGDNVVVLSGSHKGKTGTVVRVFPGKAKAIVEGVNI 43


>gi|312130538|ref|YP_003997878.1| lsu ribosomal protein l24p [Leadbetterella byssophila DSM 17132]
 gi|311907084|gb|ADQ17525.1| LSU ribosomal protein L24P [Leadbetterella byssophila DSM 17132]
          Length = 112

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
                  +  +  + G+ V V  G      G +  V  +K+RV VE
Sbjct: 1   MERKFNKIPKLHVKSGDTVQVISGNSKGKTGKIVEVLVKKNRVVVE 46


>gi|83591265|ref|YP_431274.1| 50S ribosomal protein L24 [Moorella thermoacetica ATCC 39073]
 gi|109893291|sp|Q2RFQ8|RL24_MOOTA RecName: Full=50S ribosomal protein L24
 gi|83574179|gb|ABC20731.1| LSU ribosomal protein L24P [Moorella thermoacetica ATCC 39073]
          Length = 108

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
             V  + G+ V V  G  A   G V +V+  + RV VE V I  R T 
Sbjct: 4   PRVHVKKGDTVMVITGKDAGKKGKVLSVEPARGRVVVEGVNIVKRHTR 51


>gi|289597182|ref|YP_003483878.1| ribosomal protein L24 [Aciduliprofundum boonei T469]
 gi|289534969|gb|ADD09316.1| ribosomal protein L24 [Aciduliprofundum boonei T469]
          Length = 156

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            G+ V V  G F    G V  V+ +  RV VE
Sbjct: 46  KGDIVKVMRGKFKGHEGKVVKVNLKNMRVAVE 77


>gi|217075544|gb|ACJ86132.1| unknown [Medicago truncatula]
          Length = 194

 Score = 34.3 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 22/74 (29%)

Query: 82  TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141
           T   +      +    +          + +      +  +  +VG+ V V  G      G
Sbjct: 32  TLSPLLPGKPTDKQCRIVMKLKRWEREECKPNSLPVLHKLHVKVGDTVKVISGHEKGQIG 91

Query: 142 IVKNVDEEKSRVHV 155
            V  + +  S + V
Sbjct: 92  EVTKIFKHNSTIIV 105


>gi|313836035|gb|EFS73749.1| ribosomal protein L24 [Propionibacterium acnes HL037PA2]
 gi|314929574|gb|EFS93405.1| ribosomal protein L24 [Propionibacterium acnes HL044PA1]
 gi|314970541|gb|EFT14639.1| ribosomal protein L24 [Propionibacterium acnes HL037PA3]
 gi|328906216|gb|EGG25991.1| 50S ribosomal protein L24 [Propionibacterium sp. P08]
          Length = 122

 Score = 34.3 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           + S+  + G+RV V  G      G V +VD ++ RV VE V I
Sbjct: 1   MKSLRIKKGDRVKVIAGNDKGTIGEVLSVDPKRERVVVEGVNI 43


>gi|32475069|ref|NP_868063.1| 50S ribosomal protein L24 [Rhodopirellula baltica SH 1]
 gi|46396792|sp|Q7UN09|RL24_RHOBA RecName: Full=50S ribosomal protein L24
 gi|32445609|emb|CAD75610.1| probable 50S ribosomal protein L24 [Rhodopirellula baltica SH 1]
 gi|327540589|gb|EGF27164.1| 50S ribosomal protein L24 [Rhodopirellula baltica WH47]
          Length = 115

 Score = 34.3 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           + F V + V V  G      G +  VD +K +V VE
Sbjct: 1   MKFRVDDEVIVIAGADKGHRGKILKVDRDKDKVVVE 36


>gi|307702948|ref|ZP_07639895.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC family
           protein [Streptococcus oralis ATCC 35037]
 gi|307623341|gb|EFO02331.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC family
           protein [Streptococcus oralis ATCC 35037]
          Length = 742

 Score = 34.3 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115
           FF  Y  +     M     H  +   +++    + ++     + E+    +++       
Sbjct: 364 FFGAYEFLGFTQPMDTYYEHLKQQGFRILTLAHSKDHIMSPANMELLGHVVLSDEIKDNT 423

Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159
           +     F   G  V +  G            A F    + +D  K       RV +E  I
Sbjct: 424 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSEQDFERVVLEHEI 483

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGRVTP      Q +K+V
Sbjct: 484 FGRVTP-----EQKQKMV 496


>gi|302766361|ref|XP_002966601.1| hypothetical protein SELMODRAFT_38168 [Selaginella moellendorffii]
 gi|300166021|gb|EFJ32628.1| hypothetical protein SELMODRAFT_38168 [Selaginella moellendorffii]
          Length = 153

 Score = 34.3 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           G++V +  G      G VK V  ++++V VE
Sbjct: 18  GDKVKIITGNDKGLTGTVKEVFRKRNKVIVE 48


>gi|168005708|ref|XP_001755552.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693259|gb|EDQ79612.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV---IFGRVT 164
             V    Q  + +V  ++G  V + +G +   N  + ++D  K    V +      GR+ 
Sbjct: 320 KHVLKVDQEELETVIPQIGGVVRIVNGAYRGSNARLLSIDTSKFAASVRIENGAFDGRII 379

Query: 165 PVELAYNQVEKIV 177
                Y  + KIV
Sbjct: 380 TA--DYEDICKIV 390


>gi|46396694|sp|P60745|RL24_SPIKU RecName: Full=50S ribosomal protein L24
 gi|34849403|gb|AAP58902.1| ribosomal protein L24 [Spiroplasma kunkelii CR2-3x]
          Length = 106

 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ V F+ G+ V V  G      G +  V  EKSRV +E
Sbjct: 1   MNKVKFKKGDLVKVIAGKHKGTEGPIIRVLREKSRVVIE 39


>gi|326941837|gb|AEA17733.1| HAD superfamily hydrolase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 261

 Score = 34.3 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 12  SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
           S+ E    + I   + + GL  +V             R  ++ N     F  Y+ +    
Sbjct: 81  SSFENTVAQEIYRYIHKKGLADIV--------CANEQRYTKRKNEHHHNFEAYMGVHIAE 132

Query: 72  TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
            + +      T         GE    VT  +    M Q
Sbjct: 133 IEALEEEFGKTVHPAKLFVFGEEEKIVTLDQELRDMFQ 170


>gi|224534748|ref|ZP_03675320.1| ribosomal protein L24 [Borrelia spielmanii A14S]
 gi|224513996|gb|EEF84318.1| ribosomal protein L24 [Borrelia spielmanii A14S]
          Length = 101

 Score = 34.3 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
                ++G+ V +  G      G + +++ +K++V VE
Sbjct: 1   MKTKLKIGDSVKIISGKDKGRIGKIASINRKKNKVIVE 38


>gi|268316419|ref|YP_003290138.1| 50S ribosomal protein L24 [Rhodothermus marinus DSM 4252]
 gi|262333953|gb|ACY47750.1| ribosomal protein L24 [Rhodothermus marinus DSM 4252]
          Length = 118

 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               +     +  + G+ V V  G      G +  V  +K RV VE
Sbjct: 1   MPRTKNKQPKLHVKRGDLVRVIAGNDKGKEGRILRVFPKKQRVIVE 46


>gi|322375798|ref|ZP_08050309.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. C300]
 gi|321279066|gb|EFX56108.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. C300]
          Length = 761

 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115
           FF  Y  +     M     H  +   +++    + ++     + E+    +++       
Sbjct: 383 FFGAYEFLGFTQPMDTYYEHLKQQGFRILTLAHSKDHIMSPANMELLGHVVLSDEIKDNT 442

Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159
           +     F   G  V +  G            A F    + +D  K       RV +E  I
Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSEQDFERVVLEHEI 502

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGRVTP      Q +K+V
Sbjct: 503 FGRVTP-----EQKQKMV 515


>gi|110004240|emb|CAK98578.1| 50s ribosomal protein l24 [Spiroplasma citri]
          Length = 106

 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +  V F+ G+ V V  G      G +  V  EKSRV +E
Sbjct: 1   MDKVKFKKGDLVKVIAGKHKGTEGPIIRVLREKSRVVIE 39


>gi|124003673|ref|ZP_01688521.1| ribosomal protein L24 [Microscilla marina ATCC 23134]
 gi|123990728|gb|EAY30195.1| ribosomal protein L24 [Microscilla marina ATCC 23134]
          Length = 114

 Score = 34.3 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
               +     +  + G++V V  G      G V  V  EK+RV VE
Sbjct: 1   MERKKNKQPKLHLKKGDKVRVIAGNSRGKEGDVLEVIIEKNRVVVE 46


>gi|300508649|pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
           This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
           Molecule A In The Same Asymmetric Unit Is Deposited As
           3mr8 (50s) And 3ms1 (30s).
 gi|300508704|pdb|3MS1|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
           This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
           Molecule B In The Same Asymmetric Unit Is Deposited As
           3mrz (50s) And 3ms0 (30s)
          Length = 109

 Score = 34.3 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQ---VEK 175
            +  + G+ V V+ G +    G VK V  +K  V VE V I  +   V   Y Q   +EK
Sbjct: 3   KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEK 62


>gi|221061477|ref|XP_002262308.1| ribosomal protein l24 [Plasmodium knowlesi strain H]
 gi|193811458|emb|CAQ42186.1| ribosomal protein l24, putative [Plasmodium knowlesi strain H]
          Length = 229

 Score = 34.3 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
             +VG+ V V  GP+    G+V N++ +++ V V
Sbjct: 55  NIKVGDLVKVIYGPYKDREGLVLNINTKRNTVIV 88


>gi|39996910|ref|NP_952861.1| hypothetical protein GSU1811 [Geobacter sulfurreducens PCA]
 gi|39983798|gb|AAR35188.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|307634933|gb|ADI84646.2| SPOR domain protein [Geobacter sulfurreducens KN400]
          Length = 260

 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV 48
           Y VQV S+ E+K  ++I  +L+  G    VTE TIP +     
Sbjct: 190 YSVQVASSKERKDADAIRAKLAEKGFSAYVTESTIPGKGTWYR 232


>gi|297625793|ref|YP_003687556.1| 50S ribosomal protein L24 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921558|emb|CBL56112.1| 50S ribosomal protein L24 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 123

 Score = 34.3 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
           ++ +  + G+RV V  G      G +  VD    RV V
Sbjct: 1   MAKMKLKKGDRVQVIAGKDKGVVGEIIAVDPANERVTV 38


>gi|228941215|ref|ZP_04103768.1| hypothetical protein bthur0008_38540 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974147|ref|ZP_04134717.1| hypothetical protein bthur0003_39010 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980739|ref|ZP_04141044.1| hypothetical protein bthur0002_39040 [Bacillus thuringiensis Bt407]
 gi|228778908|gb|EEM27170.1| hypothetical protein bthur0002_39040 [Bacillus thuringiensis Bt407]
 gi|228785487|gb|EEM33496.1| hypothetical protein bthur0003_39010 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818374|gb|EEM64446.1| hypothetical protein bthur0008_38540 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 267

 Score = 34.3 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 12  SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
           S+ E    + I   + + GL  +V             R  ++ N     F  Y+ +    
Sbjct: 87  SSFENTVAQEIYRYIHKKGLADIV--------CANEQRYTKRKNEHHHNFEAYMGVHIAE 138

Query: 72  TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
            + +      T         GE    VT  +    M Q
Sbjct: 139 IEALEEEFGKTVHPAKLFVFGEEEKIVTLDQELRDMFQ 176


>gi|317491663|ref|ZP_07950098.1| transcription termination factor nusG [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920097|gb|EFV41421.1| transcription termination factor nusG [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 153

 Score = 34.3 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR--KVNSERRF 60
             WY+V       ++A  ++           L      P  R+   RK            
Sbjct: 1   MGWYLVCCKRGKIEQAKTTL---------SLLGVRTFCPMMRIEKKRKDSGGVRVKIEPM 51

Query: 61  FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120
           F  Y+ ++    +    ++  +P V  F+  G+ P  +  + I+ +M Q    +    + 
Sbjct: 52  FQPYLFVEFDPLEVNISSVNSSPGVSYFVRYGDEPRALPKALIDALMIQTYTQIAPADAE 111

Query: 121 VFFEV 125
           V  E 
Sbjct: 112 VQDEK 116


>gi|218236148|ref|YP_002368867.1| HAD-superfamily hydrolase, subfamily IIB [Bacillus cereus B4264]
 gi|218164105|gb|ACK64097.1| HAD-superfamily hydrolase, subfamily IIB [Bacillus cereus B4264]
          Length = 267

 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 12  SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71
           S+ E    + I   + + GL  +V             R  ++ N     F  Y+ +    
Sbjct: 87  SSFENVVAQEIYRYIHKKGLADIV--------CANEQRYTKRKNEHHHNFEAYMGVHIAE 138

Query: 72  TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109
            + +      T         G     VT  +    M Q
Sbjct: 139 IEALEEEFGKTVHPAKLFVFGGEEKIVTLDQELRDMFQ 176


>gi|60688161|gb|AAH91133.1| Cpb2 protein [Rattus norvegicus]
          Length = 421

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 3/123 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR--KVNSERRFFPG 63
           Y+++V S  E +   +I         + +     +     V+   G+        R    
Sbjct: 157 YVLKV-SGKEHRVKNAIWIDCGIHAREWISPAFCLWFIGYVTQFHGKENTYTRLLRHVDF 215

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y++    +    Y   K+            N    TD                  S    
Sbjct: 216 YIMPVMNVDGYDYTWKKNRMWRKNRSVHMNNRCVGTDLNRNFASKHWCEKGASSFSCSET 275

Query: 124 EVG 126
             G
Sbjct: 276 YCG 278


>gi|313818008|gb|EFS55722.1| ribosomal protein L24 [Propionibacterium acnes HL046PA2]
          Length = 122

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           + S+  + G+RV V  G      G V +VD  + RV VE V I
Sbjct: 1   MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNI 43


>gi|289427740|ref|ZP_06429452.1| ribosomal protein L24 [Propionibacterium acnes J165]
 gi|295131376|ref|YP_003582039.1| ribosomal protein L24 [Propionibacterium acnes SK137]
 gi|289159231|gb|EFD07423.1| ribosomal protein L24 [Propionibacterium acnes J165]
 gi|291375336|gb|ADD99190.1| ribosomal protein L24 [Propionibacterium acnes SK137]
 gi|313773086|gb|EFS39052.1| ribosomal protein L24 [Propionibacterium acnes HL074PA1]
 gi|313808828|gb|EFS47282.1| ribosomal protein L24 [Propionibacterium acnes HL087PA2]
 gi|313810378|gb|EFS48092.1| ribosomal protein L24 [Propionibacterium acnes HL083PA1]
 gi|313812286|gb|EFS50000.1| ribosomal protein L24 [Propionibacterium acnes HL025PA1]
 gi|313819921|gb|EFS57635.1| ribosomal protein L24 [Propionibacterium acnes HL036PA1]
 gi|313823411|gb|EFS61125.1| ribosomal protein L24 [Propionibacterium acnes HL036PA2]
 gi|313824883|gb|EFS62597.1| ribosomal protein L24 [Propionibacterium acnes HL063PA1]
 gi|313830125|gb|EFS67839.1| ribosomal protein L24 [Propionibacterium acnes HL007PA1]
 gi|313832604|gb|EFS70318.1| ribosomal protein L24 [Propionibacterium acnes HL056PA1]
 gi|314925777|gb|EFS89608.1| ribosomal protein L24 [Propionibacterium acnes HL036PA3]
 gi|314960857|gb|EFT04958.1| ribosomal protein L24 [Propionibacterium acnes HL002PA2]
 gi|314973026|gb|EFT17122.1| ribosomal protein L24 [Propionibacterium acnes HL053PA1]
 gi|314975522|gb|EFT19617.1| ribosomal protein L24 [Propionibacterium acnes HL045PA1]
 gi|314979736|gb|EFT23830.1| ribosomal protein L24 [Propionibacterium acnes HL072PA2]
 gi|314984898|gb|EFT28990.1| ribosomal protein L24 [Propionibacterium acnes HL005PA1]
 gi|314986065|gb|EFT30157.1| ribosomal protein L24 [Propionibacterium acnes HL005PA2]
 gi|314988680|gb|EFT32771.1| ribosomal protein L24 [Propionibacterium acnes HL005PA3]
 gi|315079839|gb|EFT51815.1| ribosomal protein L24 [Propionibacterium acnes HL078PA1]
 gi|315083207|gb|EFT55183.1| ribosomal protein L24 [Propionibacterium acnes HL027PA2]
 gi|315086839|gb|EFT58815.1| ribosomal protein L24 [Propionibacterium acnes HL002PA3]
 gi|315089932|gb|EFT61908.1| ribosomal protein L24 [Propionibacterium acnes HL072PA1]
 gi|315096746|gb|EFT68722.1| ribosomal protein L24 [Propionibacterium acnes HL038PA1]
 gi|327325160|gb|EGE66966.1| ribosomal protein L24 [Propionibacterium acnes HL096PA3]
 gi|327325210|gb|EGE67015.1| ribosomal protein L24 [Propionibacterium acnes HL096PA2]
 gi|327444011|gb|EGE90665.1| ribosomal protein L24 [Propionibacterium acnes HL043PA1]
 gi|327449361|gb|EGE96015.1| ribosomal protein L24 [Propionibacterium acnes HL013PA2]
 gi|327449411|gb|EGE96065.1| ribosomal protein L24 [Propionibacterium acnes HL043PA2]
 gi|328756294|gb|EGF69910.1| ribosomal protein L24 [Propionibacterium acnes HL020PA1]
 gi|328761372|gb|EGF74899.1| ribosomal protein L24 [Propionibacterium acnes HL099PA1]
          Length = 122

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           + S+  + G+RV V  G      G V +VD  + RV VE V I
Sbjct: 1   MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNI 43


>gi|153004784|ref|YP_001379109.1| ribosomal protein L24 [Anaeromyxobacter sp. Fw109-5]
 gi|166222024|sp|A7HBM9|RL24_ANADF RecName: Full=50S ribosomal protein L24
 gi|152028357|gb|ABS26125.1| ribosomal protein L24 [Anaeromyxobacter sp. Fw109-5]
          Length = 104

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            G+ V +  G      G V  +  EK RV +E
Sbjct: 6   KGDTVKIISGKEKGKQGKVLELLPEKGRVRIE 37


>gi|67482217|ref|XP_656458.1| transcription initiation factor SPT5 [Entamoeba histolytica
           HM-1:IMSS]
 gi|56473661|gb|EAL51076.1| transcription initiation factor SPT5, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 774

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
           +   S++F VG+RV V+DG +A+  GI++ +  +
Sbjct: 417 KEDVSIYFNVGDRVKVTDGMYANETGIIEAIKGD 450


>gi|313904941|ref|ZP_07838312.1| ribosomal protein L24 [Eubacterium cellulosolvens 6]
 gi|313470198|gb|EFR65529.1| ribosomal protein L24 [Eubacterium cellulosolvens 6]
          Length = 102

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165
            SV    G+ V V  G      G V +VD +K +V VE V +  +   
Sbjct: 1   MSVKIRKGDTVRVIAGKDKDKEGKVLSVDVQKRKVIVEGVNMITKSVK 48


>gi|16758414|ref|NP_446069.1| carboxypeptidase B2 precursor [Rattus norvegicus]
 gi|62899668|sp|Q9EQV9|CBPB2_RAT RecName: Full=Carboxypeptidase B2; AltName: Full=Carboxypeptidase
           R; Short=CPR; AltName: Full=Carboxypeptidase U;
           Short=CPU; AltName: Full=Thrombin-activable fibrinolysis
           inhibitor; Short=TAFI; Flags: Precursor
 gi|11526577|dbj|BAB18617.1| pre-procarboxypeptidase R [Rattus norvegicus]
 gi|78174369|gb|AAI07448.1| Carboxypeptidase B2 (plasma) [Rattus norvegicus]
          Length = 422

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 3/123 (2%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR--KVNSERRFFPG 63
           Y+++V S  E +   +I         + +     +     V+   G+        R    
Sbjct: 158 YVLKV-SGKEHRVKNAIWIDCGIHAREWISPAFCLWFIGYVTQFHGKENTYTRLLRHVDF 216

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y++    +    Y   K+            N    TD                  S    
Sbjct: 217 YIMPVMNVDGYDYTWKKNRMWRKNRSVHMNNRCVGTDLNRNFASKHWCEKGASSFSCSET 276

Query: 124 EVG 126
             G
Sbjct: 277 YCG 279


>gi|302664243|ref|XP_003023755.1| KOW motif domain protein [Trichophyton verrucosum HKI 0517]
 gi|291187766|gb|EFE43137.1| KOW motif domain protein [Trichophyton verrucosum HKI 0517]
          Length = 364

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 90  GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149
               +   +  +   + +   +    + V  V F  G+RVC+  G      G V  VDEE
Sbjct: 69  RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEE 128

Query: 150 KSRVHVE-VVIF 160
              V VE V + 
Sbjct: 129 SQSVTVEGVNML 140


>gi|325294981|ref|YP_004281495.1| MutS2 protein [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065429|gb|ADY73436.1| MutS2 protein [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 756

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             + G  V +     +   G V  VD+E+    V V        V++  +Q+E +
Sbjct: 610 EVKPGNTVKLLK---SGRKGKVLEVDKERKVAKVLVGGL----KVDVKLSQIEPV 657


>gi|320451289|ref|YP_004203385.1| 50S ribosomal protein L24 [Thermus scotoductus SA-01]
 gi|320151458|gb|ADW22836.1| 50S ribosomal protein L24 [Thermus scotoductus SA-01]
          Length = 110

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPV 166
            + +  + G+ V V+ G +    G VK V  +K  V VE V I  +   V
Sbjct: 2   QAKLHVKKGDTVLVASGKYKGQVGKVKAVLPKKGAVIVEGVNIVKKAVRV 51


>gi|167752396|ref|ZP_02424523.1| hypothetical protein ALIPUT_00640 [Alistipes putredinis DSM 17216]
 gi|167660637|gb|EDS04767.1| hypothetical protein ALIPUT_00640 [Alistipes putredinis DSM 17216]
          Length = 107

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
            +  + G+ V V+ G      G V  VD +K R  VE V I
Sbjct: 4   KLHIKKGDMVYVNAGDSKGQQGKVLKVDAQKQRAIVEGVNI 44


>gi|50843307|ref|YP_056534.1| 50S ribosomal protein L24 [Propionibacterium acnes KPA171202]
 gi|282855197|ref|ZP_06264529.1| ribosomal protein L24 [Propionibacterium acnes J139]
 gi|289424794|ref|ZP_06426576.1| ribosomal protein L24 [Propionibacterium acnes SK187]
 gi|81692388|sp|Q6A6N7|RL24_PROAC RecName: Full=50S ribosomal protein L24
 gi|50840909|gb|AAT83576.1| 50S ribosomal protein L24 [Propionibacterium acnes KPA171202]
 gi|282581785|gb|EFB87170.1| ribosomal protein L24 [Propionibacterium acnes J139]
 gi|289154757|gb|EFD03440.1| ribosomal protein L24 [Propionibacterium acnes SK187]
 gi|313763226|gb|EFS34590.1| ribosomal protein L24 [Propionibacterium acnes HL013PA1]
 gi|313793269|gb|EFS41327.1| ribosomal protein L24 [Propionibacterium acnes HL110PA1]
 gi|313801087|gb|EFS42355.1| ribosomal protein L24 [Propionibacterium acnes HL110PA2]
 gi|313816563|gb|EFS54277.1| ribosomal protein L24 [Propionibacterium acnes HL059PA1]
 gi|313828375|gb|EFS66089.1| ribosomal protein L24 [Propionibacterium acnes HL063PA2]
 gi|313837960|gb|EFS75674.1| ribosomal protein L24 [Propionibacterium acnes HL086PA1]
 gi|314914343|gb|EFS78174.1| ribosomal protein L24 [Propionibacterium acnes HL005PA4]
 gi|314917663|gb|EFS81494.1| ribosomal protein L24 [Propionibacterium acnes HL050PA1]
 gi|314919605|gb|EFS83436.1| ribosomal protein L24 [Propionibacterium acnes HL050PA3]
 gi|314924173|gb|EFS88004.1| ribosomal protein L24 [Propionibacterium acnes HL001PA1]
 gi|314930196|gb|EFS94027.1| ribosomal protein L24 [Propionibacterium acnes HL067PA1]
 gi|314957197|gb|EFT01301.1| ribosomal protein L24 [Propionibacterium acnes HL027PA1]
 gi|314957773|gb|EFT01876.1| ribosomal protein L24 [Propionibacterium acnes HL002PA1]
 gi|314963531|gb|EFT07631.1| ribosomal protein L24 [Propionibacterium acnes HL082PA1]
 gi|314965083|gb|EFT09182.1| ribosomal protein L24 [Propionibacterium acnes HL082PA2]
 gi|314969886|gb|EFT13984.1| ribosomal protein L24 [Propionibacterium acnes HL037PA1]
 gi|314982263|gb|EFT26356.1| ribosomal protein L24 [Propionibacterium acnes HL110PA3]
 gi|315077153|gb|EFT49220.1| ribosomal protein L24 [Propionibacterium acnes HL053PA2]
 gi|315090450|gb|EFT62426.1| ribosomal protein L24 [Propionibacterium acnes HL110PA4]
 gi|315093685|gb|EFT65661.1| ribosomal protein L24 [Propionibacterium acnes HL060PA1]
 gi|315097974|gb|EFT69950.1| ribosomal protein L24 [Propionibacterium acnes HL059PA2]
 gi|315100617|gb|EFT72593.1| ribosomal protein L24 [Propionibacterium acnes HL046PA1]
 gi|315103978|gb|EFT75954.1| ribosomal protein L24 [Propionibacterium acnes HL050PA2]
 gi|315106062|gb|EFT78038.1| ribosomal protein L24 [Propionibacterium acnes HL030PA1]
 gi|315109221|gb|EFT81197.1| ribosomal protein L24 [Propionibacterium acnes HL030PA2]
 gi|327326700|gb|EGE68486.1| ribosomal protein L24 [Propionibacterium acnes HL103PA1]
 gi|327332720|gb|EGE74454.1| ribosomal protein L24 [Propionibacterium acnes HL097PA1]
 gi|327451432|gb|EGE98086.1| ribosomal protein L24 [Propionibacterium acnes HL087PA3]
 gi|327451593|gb|EGE98247.1| ribosomal protein L24 [Propionibacterium acnes HL092PA1]
 gi|327451880|gb|EGE98534.1| ribosomal protein L24 [Propionibacterium acnes HL083PA2]
 gi|328752094|gb|EGF65710.1| ribosomal protein L24 [Propionibacterium acnes HL087PA1]
 gi|328755510|gb|EGF69126.1| ribosomal protein L24 [Propionibacterium acnes HL025PA2]
          Length = 122

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159
           + S+  + G+RV V  G      G V +VD  + RV VE V I
Sbjct: 1   MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNI 43


>gi|281203415|gb|EFA77615.1| hypothetical protein PPL_12222 [Polysphondylium pallidum PN500]
          Length = 636

 Score = 33.9 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 22/154 (14%)

Query: 21  SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK 80
           ++  R+ +     L+             R  + +  + +    Y  +K  M D      K
Sbjct: 103 NLKDRIIQMNNQDLIE--------YTKRRSLKTLTDKEKEILLYKFVK-NMNDLNIDLQK 153

Query: 81  DTPKVIGFLGTGENPS---PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER----VCVSD 133
           +   +    G  ++      + +    +  + V +     +   +          V +  
Sbjct: 154 NKFIIAAVSGGADSICNLSYLMNYCYFYRNDVVYSMALCFLLKGWCNRHGISLVAVTIDH 213

Query: 134 G---PFASFNGI---VKNVDEEKSRVHVEVVIFG 161
           G   P      I   ++ +D +   + V++  FG
Sbjct: 214 GLVPPSEDIVAIAENIRKIDADIQHIVVKIDWFG 247


>gi|291525802|emb|CBK91389.1| Transposase and inactivated derivatives [Eubacterium rectale DSM
           17629]
          Length = 512

 Score = 33.9 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 16  KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75
           KK V  +  R     +   + E    +          K  +  +  P Y  I+  +    
Sbjct: 28  KKTVNRVLKRAKELDISWPLDESDTDAVLAEKFFPSVKQVTSNKRMPDYAYIRKEL--LR 85

Query: 76  YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135
               K             N              Q +    R    +  + GE+V V    
Sbjct: 86  NGVSKKLLWTEYMEDCRANGEEPLMYSQFCYRIQQDEQKHRATMHINRKPGEQVEVD--- 142

Query: 136 FASFNGIVKNVDEE---KSRVHVEVVIFGRVTPVE--LAYNQ 172
           +A     V + D     K+ + V V+ + + T VE  L   Q
Sbjct: 143 WAGDPATVIDPDTGEIIKAYIFVGVMTYSQYTYVEAFLDMKQ 184


>gi|293364700|ref|ZP_06611417.1| E1-E2 family cation-transporting ATPase [Streptococcus oralis ATCC
           35037]
 gi|291316150|gb|EFE56586.1| E1-E2 family cation-transporting ATPase [Streptococcus oralis ATCC
           35037]
          Length = 761

 Score = 33.9 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 60  FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115
           FF  Y  +     M     H  +   +++    + ++     + E+    +++       
Sbjct: 383 FFGAYEFLGFTQPMDTYYEHLKQQGFRILTLAHSKDHIMSPANMELLGHVVLSDEIKDNT 442

Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159
           +     F   G  V +  G            A F    + +D  K       RV +E  I
Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSEQDFERVVLEHEI 502

Query: 160 FGRVTPVELAYNQVEKIV 177
           FGRVTP      Q +K+V
Sbjct: 503 FGRVTP-----EQKQKMV 515


>gi|163786179|ref|ZP_02180627.1| 50S ribosomal protein L24 [Flavobacteriales bacterium ALC-1]
 gi|159878039|gb|EDP72095.1| 50S ribosomal protein L24 [Flavobacteriales bacterium ALC-1]
          Length = 103

 Score = 33.9 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  + G+ V V  G      G V  V  +K++  VE
Sbjct: 1   MTKLKIKSGDTVKVIAGDHKGSEGKVLKVLIDKNKAIVE 39


>gi|225561038|gb|EEH09319.1| ribosomal protein L14 [Ajellomyces capsulatus G186AR]
          Length = 217

 Score = 33.9 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158
            N +        S    EVG  V +  GP+     ++  + + K    V V 
Sbjct: 68  FNAMAQIDITTSSWKLVEVGRVVLIRSGPYTGKLAVIVEIIDHK---RVLVD 116


>gi|329963438|ref|ZP_08301013.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
 gi|328528685|gb|EGF55646.1| transcription termination/antitermination factor NusG [Bacteroides
           fluxus YIT 12057]
          Length = 128

 Score = 33.9 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 13/130 (10%)

Query: 5   WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64
           WY ++     E  A+  +                 +P +  + +RKG+K+ +        
Sbjct: 8   WYAMRATYRREPDAMRLLEKEK---------LGCFVPMQYKMCIRKGKKIRALVPVVHNL 58

Query: 65  VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120
           + + A  ++      + T               + D E++  +    +            
Sbjct: 59  IFVHARPSEVQRVKSQVTYLQYITDTRSGKKIIIPDVEMQRFIAVAGSYNDHLLYFQPEE 118

Query: 121 VFFEVGERVC 130
           +    G +V 
Sbjct: 119 LNLSKGTKVR 128


>gi|132821|sp|P27683|RK24_SPIOL RecName: Full=50S ribosomal protein L24, chloroplastic; AltName:
           Full=CL24; Flags: Precursor
 gi|189096145|pdb|3BBO|W Chain W, Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
 gi|170137|gb|AAA34042.1| ribosomal protein L24 [Spinacia oleracea]
 gi|47154906|emb|CAA31552.1| precursor ribosomal protein L24 homologue [Spinacia oleracea]
          Length = 191

 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 20/64 (31%)

Query: 92  GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151
           G +P  +            +      +     +VG+ V V  G      G +  + +  S
Sbjct: 38  GHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNS 97

Query: 152 RVHV 155
            V +
Sbjct: 98  TVII 101


>gi|254495352|ref|ZP_05108276.1| 50S ribosomal protein L24 [Polaribacter sp. MED152]
 gi|85819706|gb|EAQ40863.1| 50S ribosomal protein L24 [Polaribacter sp. MED152]
          Length = 100

 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           +     + G+ V V  G      G V  + ++K RV VE
Sbjct: 1   MKKFKLKSGDTVKVIAGDHKGSEGKVLQIIKDKDRVLVE 39


>gi|28377843|ref|NP_784735.1| ribosomal protein L24 [Lactobacillus plantarum WCFS1]
 gi|254556028|ref|YP_003062445.1| ribosomal protein L24 [Lactobacillus plantarum JDM1]
 gi|300767832|ref|ZP_07077742.1| 50S ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180022|ref|YP_003924150.1| ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|46396874|sp|Q88XX5|RL24_LACPL RecName: Full=50S ribosomal protein L24
 gi|28270676|emb|CAD63582.1| ribosomal protein L24 [Lactobacillus plantarum WCFS1]
 gi|254044955|gb|ACT61748.1| ribosomal protein L24 [Lactobacillus plantarum JDM1]
 gi|300494817|gb|EFK29975.1| 50S ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308045513|gb|ADN98056.1| ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 103

 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           + G++V V  G      G VK V   K+R+ VE
Sbjct: 4   KTGDKVRVISGKDRGQEGTVKKVISAKNRIVVE 36


>gi|149248452|ref|XP_001528613.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448567|gb|EDK42955.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1058

 Score = 33.9 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 25/144 (17%)

Query: 6   YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65
           Y ++     EK+ V  +  +       +   +I                  +R  F GYV
Sbjct: 276 YAIRCSPGKEKEIVRKLYEKKRTLERQNTPLDIL--------------TVFQRDSFRGYV 321

Query: 66  LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125
            I+A   D +   ++    +              D  +  +    +   Q   S V  + 
Sbjct: 322 YIEAKRPDAIDKALQGMVNIY-----------TRDKLLVSVKEYPDLLKQVKSSDVELKP 370

Query: 126 GERVCVSDGPFASFNGIVKNVDEE 149
           G  V ++ G +     IV N+ E 
Sbjct: 371 GVYVRIARGKYKGDLAIVDNLSEN 394


>gi|298483360|ref|ZP_07001538.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298270489|gb|EFI12072.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 76

 Score = 33.9 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 2  TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50
          + RWY+  V  + EKK  E    RLS+ G+D  V       +     + 
Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDSFVPVQQQIHQWSDRRKM 68


>gi|46199619|ref|YP_005286.1| 50S ribosomal protein L24 [Thermus thermophilus HB27]
 gi|55981650|ref|YP_144947.1| 50S ribosomal protein L24 [Thermus thermophilus HB8]
 gi|45645195|sp|Q56435|RL24_THETH RecName: Full=50S ribosomal protein L24
 gi|62287401|sp|Q5SHP9|RL24_THET8 RecName: Full=50S ribosomal protein L24
 gi|81405584|sp|Q72I15|RL24_THET2 RecName: Full=50S ribosomal protein L24
 gi|116668256|pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
           This File Contains The 50s Subunit From Molecule I.
 gi|116668317|pdb|2J03|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
           This File Contains The 50s Subunit From Molecule Ii.
 gi|119389754|pdb|2HGJ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
           Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
           This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
 gi|119389811|pdb|2HGQ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
           With Translocated And Rotated Shine-Dalgarno Duplex.
           This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
 gi|119389867|pdb|2HGU|X Chain X, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
           P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
           Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
           Found In Pdb Entry 2hgr.
 gi|149240904|pdb|1VSA|S Chain S, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
           Functional Interactions And Rearrangements. This File,
           1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
           Subunit Is In The File 2ow8
 gi|157836539|pdb|2V47|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 2 Of 4). This File Contains The 50s
           Subunit For Molecule 1.
 gi|157836595|pdb|2V49|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 4 Of 4). This File Contains The 50s
           Subunit Of Molecule 2.
 gi|160285446|pdb|1VSP|S Chain S, Interactions And Dynamics Of The Shine-Dalgarno Helix In
           The 70s Ribosome. This File, 1vsp, Contains The 50s
           Ribosome Subunit. 30s Ribosome Subunit Is In The File
           2qnh
 gi|209156538|pdb|3D5B|Y Chain Y, Structural Basis For Translation Termination On The 70s
           Ribosome. This File Contains The 50s Subunit Of One 70s
           Ribosome. The Entire Crystal Structure Contains Two 70s
           Ribosomes As Described In Remark 400.
 gi|209156592|pdb|3D5D|Y Chain Y, Structural Basis For Translation Termination On The 70s
           Ribosome. This File Contains The 50s Subunit Of The
           Second 70s Ribosome. The Entire Crystal Structure
           Contains Two 70s Ribosomes As Described In Remark 400.
 gi|211938875|pdb|2JL6|Y Chain Y, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome (Part 2 Of 4). This File
           Contains The 50s Subunit.
 gi|211938933|pdb|2JL8|Y Chain Y, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome (Part 4 Of 4). This File
           Contains The 50s Subunit.
 gi|218766815|pdb|3F1F|Y Chain Y, Crystal Structure Of A Translation Termination Complex
           Formed With Release Factor Rf2. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes As Described In
           Remark 400.
 gi|218766871|pdb|3F1H|Y Chain Y, Crystal Structure Of A Translation Termination Complex
           Formed With Release Factor Rf2. This File Contains The
           50s Subunit Of The Second 70s Ribosome. The Entire
           Crystal Structure Contains Two 70s Ribosomes As
           Described In Remark 400.
 gi|226887454|pdb|2WDI|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A-Site Trna,
           Deacylated P-Site Trna, And E-Site Trna. This File
           Contains The 50s Subunit For Molecule I.
 gi|226887486|pdb|2WDJ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A-Site Trna,
           Deacylated P-Site Trna, And E-Site Trna. This File
           Contains The 50s Subunit For Molecule Ii.
 gi|226887543|pdb|2WDL|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A- And P-Site
           Trnas, And E-Site Trna.  This File Contains The 50s
           Subunit For Molecule I.
 gi|226887600|pdb|2WDN|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A- And P-Site
           Trnas, And E-Site Trna.  This File Contains The 50s
           Subunit For Molecule Ii.
 gi|237823586|pdb|2WH2|Y Chain Y, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome
 gi|237823645|pdb|2WH4|Y Chain Y, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome
 gi|260100030|pdb|3HUX|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
           Contains The 50s Subunit For Molecule I.
 gi|260100086|pdb|3HUZ|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
           Contains The 50s Subunit For Molecule Ii.
 gi|261824544|pdb|2WRJ|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
           Trapped In The Post-Translocational State (Part 2 Of 4).
 gi|261824606|pdb|2WRL|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
           Trapped In The Post-Translocational State. (Part 4 Of
           4).
 gi|261824665|pdb|2WRO|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
           And Trna (Part 2 Of 4).
 gi|261824724|pdb|2WRR|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
           And Trna (Part 4 Of 4).
 gi|281307212|pdb|3KIR|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Precleavage State; Part 2 Of 4)
 gi|281307270|pdb|3KIT|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Precleavage State; Part 4 Of 4)
 gi|281307328|pdb|3KIW|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Postcleavage State; Part 2 Of 4)
 gi|281307386|pdb|3KIY|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Postcleavage State; Part 4 Of 4)
 gi|288965649|pdb|3KNI|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
           File Contains The 50s Subunit For Molecule I
 gi|288965681|pdb|3KNK|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
           File Contains The 50s Subunit For Molecule Ii.
 gi|288965713|pdb|3KNM|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
           Thi Contains The 50s Subunit For Molecule I.
 gi|288965745|pdb|3KNO|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
           Thi Contains The 50s Subunit For Molecule Ii
 gi|294979493|pdb|3I8F|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
           And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
           Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
           The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
           (50s).
 gi|294979577|pdb|3I8I|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
           And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
           Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
           The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
           (30s).
 gi|294979631|pdb|3I9C|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
           Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
           The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
           A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
           And 3i9e (50s)
 gi|294979685|pdb|3I9E|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
           Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
           The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
           B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
           And 3i9c (50s)
 gi|295982132|pdb|2X9S|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
           And A Substrate Analog Provides Insights Into Catalysis
           Of Peptide Release
 gi|295982191|pdb|2X9U|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
           And A Substrate Analog Provides Insights Into Catalysis
           Of Peptide Release
 gi|307568018|pdb|2XG0|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
           70s Ribosome (Part 2 Of 4)
 gi|307568076|pdb|2XG2|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
           70s Ribosome (Part 4 Of 4)
 gi|309320305|pdb|3OH5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Chloramphenicol. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320335|pdb|3OH7|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Chloramphenicol. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320407|pdb|3OHJ|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
           With Erythromycin. This File Contains The 50s Subunit Of
           One 70s Ribosome. The Entire Crystal Structure Contains
           Two 70s Ribosomes.
 gi|309320437|pdb|3OHK|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
           With Erythromycin. This File Contains The 50s Subunit Of
           One 70s Ribosome. The Entire Crystal Structure Contains
           Two 70s Ribosomes.
 gi|309320488|pdb|3OHZ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Azithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320539|pdb|3OI1|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Azithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320590|pdb|3OI3|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Telithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320641|pdb|3OI5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Telithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|312207730|pdb|2XQE|Y Chain Y, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
           Ribosome With A Gtp Analog
 gi|313754054|pdb|2XTG|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The        Pre-
           Translocational Translocation Intermediate Ti(Pre)
 gi|313754112|pdb|2XUX|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Post-
           Translocational Translocation Intermediate Ti(Post)
 gi|325533459|pdb|2Y0V|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
           Near-Cognate Codon On The 70s Ribosome
 gi|325533518|pdb|2Y0X|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
           Near-Cognate Codon On The 70s Ribosome
 gi|325533577|pdb|2Y0Z|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
           A Near-Cognate Codon On The 70s Ribosome
 gi|325533636|pdb|2Y11|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
           Cognate Codon On The 70s Ribosome.
 gi|325533695|pdb|2Y13|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
           A Near-Cognate Codon On The 70s Ribosome
 gi|325533754|pdb|2Y15|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
           A Cognate Codon On The 70s Ribosome.
 gi|325533813|pdb|2Y17|Y Chain Y, Ef-Tu Complex 3
 gi|325533872|pdb|2Y19|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
           Cognate Codon On The 70s Ribosome.
 gi|469676|emb|CAA83517.1| ribosomal protein L24 [Thermus thermophilus]
 gi|46197245|gb|AAS81659.1| LSU ribosomal protein L24P [Thermus thermophilus HB27]
 gi|55773063|dbj|BAD71504.1| 50S ribosomal protein L24 [Thermus thermophilus HB8]
          Length = 110

 Score = 33.9 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQ---VEK 175
            +  + G+ V V+ G +    G VK V  +K  V VE V I  +   V   Y Q   +EK
Sbjct: 4   KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEK 63


>gi|332042709|gb|EGI78909.1| ribosomal protein L24 [Lacinutrix algicola 5H-3-7-4]
          Length = 103

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
           ++ +  + G+ V V  G      G V+ V   K++  VE
Sbjct: 1   MTKLKIKSGDTVKVIAGDHKGSEGKVQKVLSGKNKAIVE 39


>gi|229579217|ref|YP_002837615.1| 50S ribosomal protein L24P [Sulfolobus islandicus Y.G.57.14]
 gi|229582031|ref|YP_002840430.1| 50S ribosomal protein L24P [Sulfolobus islandicus Y.N.15.51]
 gi|284997905|ref|YP_003419672.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5]
 gi|228009931|gb|ACP45693.1| ribosomal protein L24 [Sulfolobus islandicus Y.G.57.14]
 gi|228012747|gb|ACP48508.1| ribosomal protein L24 [Sulfolobus islandicus Y.N.15.51]
 gi|284445800|gb|ADB87302.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5]
          Length = 119

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    G+ V V  G      G V  ++    R+ +E
Sbjct: 41  RIRVRKGDTVRVMRGNHNGKEGKVTEINTRTGRLAIE 77


>gi|118411070|ref|YP_874465.1| 50S ribosomal protein L24 [Phaeodactylum tricornutum]
 gi|125987567|sp|A0T0J0|RK24_PHATC RecName: Full=50S ribosomal protein L24, chloroplastic
 gi|116739817|gb|ABK20688.1| 50S ribosomal protein L24 [Phaeodactylum tricornutum]
          Length = 82

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155
               V  ++G+ V V  G   +  G V  ++ +  ++ V
Sbjct: 3   QKQKVNVKIGDSVTVISGFHKNETGEVLKINRKNGKIIV 41


>gi|15897613|ref|NP_342218.1| 50S ribosomal protein L24P [Sulfolobus solfataricus P2]
 gi|284174937|ref|ZP_06388906.1| 50S ribosomal protein L24P [Sulfolobus solfataricus 98/2]
 gi|11134767|sp|Q9UX95|RL24_SULSO RecName: Full=50S ribosomal protein L24P
 gi|6015770|emb|CAB57597.1| ribosomal protein L24 (HMAL24) [Sulfolobus solfataricus P2]
 gi|13813876|gb|AAK41008.1| LSU ribosomal protein L24AB (rpl24AB) [Sulfolobus solfataricus P2]
 gi|261602380|gb|ACX91983.1| ribosomal protein L24 [Sulfolobus solfataricus 98/2]
          Length = 119

 Score = 33.9 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156
            +    G+ V V  G  +   G V  V+ +  R+ +E
Sbjct: 41  RIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIE 77


>gi|186505223|ref|NP_180968.2| structural constituent of ribosome / transcription elongation
           regulator/ transcription initiation factor [Arabidopsis
           thaliana]
 gi|330253842|gb|AEC08936.1| Transcription elongation factor Spt5 [Arabidopsis thaliana]
          Length = 989

 Score = 33.9 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 28/155 (18%)

Query: 3   PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62
           P+ ++V+     E++    +  ++   G +  +                 +         
Sbjct: 169 PKLWLVKCAIGREREVAVCLMQKIVDRGSEFKI-----------------RSAIALDHLQ 211

Query: 63  GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
            YV I+A M   V   IK    +       +    V   E+  +++           ++ 
Sbjct: 212 NYVYIEADMEAHVKEAIKGMRNIYA----NQKILLVPIKEMTAVLS-------VESKAID 260

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157
                 V +  G +      V +VD  + RV V++
Sbjct: 261 LSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKL 295


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.135    0.400 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,528,266,968
Number of Sequences: 13984884
Number of extensions: 70913413
Number of successful extensions: 168329
Number of sequences better than 10.0: 3241
Number of HSP's better than 10.0 without gapping: 2660
Number of HSP's successfully gapped in prelim test: 581
Number of HSP's that attempted gapping in prelim test: 162637
Number of HSP's gapped (non-prelim): 3539
length of query: 177
length of database: 4,792,584,752
effective HSP length: 129
effective length of query: 48
effective length of database: 2,988,534,716
effective search space: 143449666368
effective search space used: 143449666368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 76 (33.9 bits)