RPSBLAST alignment of GI: 254780148 and protein with PDBid: 2jvv
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A Length = 181
Score = 143 bits (362), Expect = 2e-35
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFPG
Sbjct: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
YVL++ VM D +H ++ P+V+GF+ GT + P+P++D E++ IMN+++ +P
Sbjct: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127
Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180