RPSBLAST alignment of GI: 254780148 and protein with PDBid: 2jvv

>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A Length = 181
 Score =  143 bits (362), Expect = 2e-35
 Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
           RWY+VQ +S  E +   S+   +    ++ L  E+ +P+E VV +R G++  SER+FFPG
Sbjct: 8   RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFL-GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122
           YVL++ VM D  +H ++  P+V+GF+ GT + P+P++D E++ IMN+++    +P     
Sbjct: 68  YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127

Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175
           FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK
Sbjct: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180