Query gi|254780149|ref|YP_003064562.1| hypothetical protein CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 103 out of 909
Neff 5.6
Searched_HMMs 33803
Date Mon May 23 14:00:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780149.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3bo0_B Preprotein translocase 99.8 4.3E-20 1.3E-24 130.8 4.5 64 4-67 2-65 (65)
2 >2akh_Z Preprotein translocase 99.8 1.1E-18 3.1E-23 123.1 8.8 61 6-66 50-110 (111)
3 >3dl8_C SECE; RECA-type ATPase 99.8 3.1E-19 9.2E-24 126.0 4.9 62 6-67 2-63 (65)
4 >3din_D Preprotein translocase 99.7 6.1E-19 1.8E-23 124.4 0.1 61 6-66 2-62 (65)
5 >2zjs_E Preprotein translocase 99.7 2.5E-18 7.5E-23 121.0 -3.0 57 6-62 3-59 (60)
6 >2ww9_B Protein transport prot 91.6 1 3E-05 24.5 7.5 50 6-55 23-72 (80)
7 >1rh5_B Preprotein translocase 91.2 1.1 3.2E-05 24.3 7.9 56 7-62 11-66 (74)
8 >2wwb_B SEC61gamma, protein tr 91.0 0.78 2.3E-05 25.1 6.2 46 7-52 10-55 (68)
9 >3ixz_A Potassium-transporting 22.4 61 0.0018 14.7 6.4 54 6-59 55-108 (124)
10 >1zoy_C Large cytochrome bindi 19.8 70 0.0021 14.4 2.6 39 12-50 70-113 (114)
No 1
>>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B (B:)
Probab=99.79 E-value=4.3e-20 Score=130.76 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5655999999999999873489889999999999999999999999999999999999971179
Q gi|254780149|r 4 NRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIGR 67 (67)
Q Consensus 4 ~~~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lgr 67 (67)
...++.+|++|+++|||||+||||+|+.++|.+|+++++++++|+|++|.+++++++.++|+||
T Consensus 2 k~~~~~~f~~ev~~ElkKV~WPtr~E~~~~T~vVli~~ii~~~~l~~~D~~~~~~~~~i~gl~k 65 (65)
T 3bo0_B 2 KGKATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8487999999999998451089808988799999999999999999999999999999975339
No 2
>>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z (Z:)
Probab=99.77 E-value=1.1e-18 Score=123.12 Aligned_cols=61 Identities=28% Similarity=0.566 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5599999999999987348988999999999999999999999999999999999997117
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lg 66 (67)
.++.+|++|++.|+|||+||||||+.++|.+|+++++++++++|++|.+++++++.++|+.
T Consensus 50 ~~~~~f~~e~~~ElkKVvWPtr~Et~~~T~iVi~~vii~al~lw~~D~~~~~~i~~ilglr 110 (111)
T 2akh_Z 50 KATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLR 110 (111)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4899999999999784789997999879999999999999999999999999999984386
No 3
>>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (C:)
Probab=99.76 E-value=3.1e-19 Score=126.03 Aligned_cols=62 Identities=34% Similarity=0.594 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 55999999999999873489889999999999999999999999999999999999971179
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIGR 67 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lgr 67 (67)
.++.+|++|+++|||||+||||+|+.++|.+|+++++++++++|++|++++++++++++++.
T Consensus 2 ~~~~~f~~ev~~ElkKV~WPtr~e~~~~T~vVi~~~~i~~~~i~~~D~~~~~~~~~i~~~~~ 63 (65)
T 3dl8_C 2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLRG 63 (65)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 37899999999997537797979987399999999999999999999999999999994424
No 4
>>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (D:)
Probab=99.71 E-value=6.1e-19 Score=124.42 Aligned_cols=61 Identities=38% Similarity=0.622 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5599999999999987348988999999999999999999999999999999999997117
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lg 66 (67)
.++.+|++|+++|+|||+||||+|+.++|.+|+++++++++++|++|++++++++.+++++
T Consensus 2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi~~v~i~~~~i~~~D~~~~~~~~~i~~~~ 62 (65)
T 3din_D 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKAL 62 (65)
T ss_dssp --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3789999999999753659897998638897778999999999999999999999998466
No 5
>>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E (E:)
Probab=99.65 E-value=2.5e-18 Score=121.02 Aligned_cols=57 Identities=18% Similarity=0.478 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 559999999999998734898899999999999999999999999999999999999
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67)
.++.+|++|+++|+|||+||||+|+.++|.+|+++++++++|+|++|.+++++++++
T Consensus 3 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi~~~~i~a~~l~~~D~~~~~~i~~i 59 (60)
T 2zjs_E 3 ARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp ---------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999974277929799873999999999999999999999999999985
No 6
>>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B (B:)
Probab=91.58 E-value=1 Score=24.46 Aligned_cols=50 Identities=18% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55999999999999873489889999999999999999999999999999
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSI 55 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~ 55 (67)
..+.+|++|.+.-++|.+=|+|+|-.+...++-+--+++|++=+.+..++
T Consensus 23 ~~~~eF~kd~~r~lk~c~KP~~kEf~~ia~a~~iGf~imG~IGf~IkLI~ 72 (80)
T 2ww9_B 23 EAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98999999989999996499889999999999998999999999999731
No 7
>>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (B:)
Probab=91.25 E-value=1.1 Score=24.27 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999998734898899999999999999999999999999999999999
Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67)
Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67)
.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++.+=+.+..++.-+-+.+
T Consensus 11 ~~~eF~~~~~r~lk~~~KPd~~Ef~~iak~~~iGf~imG~IGf~Ikli~ipi~~ii 66 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 66 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999816998999999999999999999999999999998732556
No 8
>>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (B:)
Probab=90.97 E-value=0.78 Score=25.08 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999999999873489889999999999999999999999999
Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVID 52 (67)
Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D 52 (67)
.+.+|++|.+.-+||.+=|+|+|-.+...++-+-.++++++=+.+.
T Consensus 10 ~~~eF~kd~~r~vk~c~KP~~kEf~kia~a~~iGf~imG~iGf~ik 55 (68)
T 2wwb_B 10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVK 55 (68)
T ss_dssp THHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999989999992499989999999999984999999999988
No 9
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343)
Probab=22.37 E-value=61 Score=14.69 Aligned_cols=54 Identities=11% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 559999999999998734898899999999999999999999999999999999
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLM 59 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~ 59 (67)
.+...|++|.|+|=---.=|=.+|+.+-+-......+..+++++.+....++-.
T Consensus 55 n~~igf~QE~kAeka~~~TPLq~~l~~~~~~l~~~a~~~~~~~f~~~~~~g~~~ 108 (124)
T 3ixz_A 55 TGCFGYYQEFKSTNIIEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTF 108 (124)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 999999999999999957878999999999999999999999876333135317
No 10
>>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* (C:27-140)
Probab=19.77 E-value=70 Score=14.38 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999873489-----8899999999999999999999999
Q gi|254780149|r 12 FKQVRDESKKIFWP-----SRSEVLVSVIVVIIMLSISSVFFLV 50 (67)
Q Consensus 12 ~~ev~~ElkkV~WP-----t~~e~~~~T~~Vi~~~~i~~~~i~~ 50 (67)
.--..+-.|+.-|- ++++..++..++++.+++.++.+|.
T Consensus 70 ~yH~~nGiRHL~wD~g~g~~~~~~~~sg~~~~~~s~v~t~~~~~ 113 (114)
T 1zoy_C 70 MYHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSSVGLAA 113 (114)
T ss_dssp HHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999849999998014674999999999999999999999997
Done!