Query gi|254780149|ref|YP_003064562.1| hypothetical protein CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 67 No_of_seqs 103 out of 909 Neff 5.6 Searched_HMMs 23785 Date Mon May 23 14:25:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780149.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2akh_Z Preprotein translocase 99.8 4.6E-19 1.9E-23 124.3 8.8 60 6-65 50-109 (111) 2 3dl8_C SECE; RECA-type ATPase 99.8 5E-19 2.1E-23 124.0 4.9 61 6-66 2-62 (65) 3 3bo0_B Preprotein translocase 99.7 5.1E-18 2.1E-22 118.5 4.3 62 6-67 4-65 (65) 4 3din_D Preprotein translocase 99.7 9.6E-19 4E-23 122.5 0.4 60 6-65 2-61 (65) 5 2zjs_E Preprotein translocase 99.6 4.6E-18 1.9E-22 118.8 -3.0 57 6-62 3-59 (60) 6 2wwb_B SEC61gamma, protein tra 90.0 0.75 3.2E-05 24.3 6.2 47 7-53 10-56 (68) 7 2ww9_B Protein transport prote 89.3 1.1 4.8E-05 23.3 7.6 49 7-55 24-72 (80) 8 1rh5_B Preprotein translocase 84.8 2.1 8.9E-05 21.9 8.1 50 6-55 10-59 (74) 9 3mp7_B Preprotein translocase 83.6 1.4 5.8E-05 22.9 4.5 43 7-49 7-49 (61) 10 1o7d_B Lysosomal alpha-mannosi 15.3 38 0.0016 15.0 0.8 20 7-28 9-28 (84) No 1 >2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z Probab=99.78 E-value=4.6e-19 Score=124.27 Aligned_cols=60 Identities=28% Similarity=0.581 Sum_probs=57.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 559999999999998734898899999999999999999999999999999999999711 Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI 65 (67) Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~l 65 (67) .++.+|++|++.|+|||+||||||+.++|.+|+++++++++|+|++|.+++++++.++|+ T Consensus 50 ~~~~~f~~e~r~ElkKV~WPtr~E~~~~T~vVlv~vii~~lfl~~~D~~l~~~i~~ilgl 109 (111) T 2akh_Z 50 KATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL 109 (111) T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 589999999999984386999699986999999999999999999999999999998418 No 2 >3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Probab=99.75 E-value=5e-19 Score=124.04 Aligned_cols=61 Identities=34% Similarity=0.609 Sum_probs=58.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5599999999999987348988999999999999999999999999999999999997117 Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66 (67) Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lg 66 (67) .++.+|++|+++|||||+||||+|+.++|.+|+++++++|+|++++|.++++++++++|+. T Consensus 2 ~ki~~f~~~v~~ElkKV~WPtr~e~~~~T~vVii~~ii~a~~i~~~D~~~~~~~~~ll~l~ 62 (65) T 3dl8_C 2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLR 62 (65) T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 2799999999999753779397998638998888999999999999999999999999342 No 3 >3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B Probab=99.70 E-value=5.1e-18 Score=118.54 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=60.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 55999999999999873489889999999999999999999999999999999999971179 Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIGR 67 (67) Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lgr 67 (67) .+..+|++|+++|+|||+||||+|+.++|.+|++++++.+++++++|.++++++++++|++| T Consensus 4 k~~~~f~~ev~~E~kKV~WPtr~e~~~~T~vVi~~~ii~~~~~~~~D~~~~~~~~~i~gl~~ 65 (65) T 3bo0_B 4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK 65 (65) T ss_dssp HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88999999999997122189928877588888889999999999999999999999975139 No 4 >3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} Probab=99.70 E-value=9.6e-19 Score=122.50 Aligned_cols=60 Identities=38% Similarity=0.656 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 559999999999998734898899999999999999999999999999999999999711 Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI 65 (67) Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~l 65 (67) .++.+|++|+++|||||+||||+|+.++|.+|+++++++|+|+|++|++++++++.++++ T Consensus 2 ~ki~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi~~~ii~a~~l~~~D~~~~~~~~~l~~~ 61 (65) T 3din_D 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65) T ss_dssp --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 378999999999975365989799875899888899999999999999999999999947 No 5 >2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E Probab=99.63 E-value=4.6e-18 Score=118.79 Aligned_cols=57 Identities=18% Similarity=0.478 Sum_probs=53.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 559999999999998734898899999999999999999999999999999999999 Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67) Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67) .++.+|++|+++|+|||+||||+|+.++|.+|+++++++++|++++|++++++++++ T Consensus 3 ~ri~~f~~ev~~ElkKV~WPtr~e~~~~T~vVi~~~~i~~~~l~~~D~~~~~~i~~i 59 (60) T 2zjs_E 3 ARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60) T ss_dssp ---------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC-- T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 889999999999961277929799873999999999999999999999999999985 No 6 >2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Probab=89.99 E-value=0.75 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=36.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 59999999999998734898899999999999999999999999999 Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQ 53 (67) Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~ 53 (67) .+.+|++|...=+||.+=|+|+|-.+...++-+--++++.+=+.+.. T Consensus 10 ~~~~F~kds~~~vkrC~KPdrkEf~ki~~a~~iGf~imG~iGf~vKL 56 (68) T 2wwb_B 10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKL 56 (68) T ss_dssp THHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999899999924999899999999999849999999999885 No 7 >2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B Probab=89.34 E-value=1.1 Score=23.34 Aligned_cols=49 Identities=18% Similarity=0.018 Sum_probs=37.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5999999999999873489889999999999999999999999999999 Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSI 55 (67) Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~ 55 (67) .+.+|++|.+.=+||.+=|+++|-.+...++-+--++++++=+.+..++ T Consensus 24 ~~~~F~kds~r~vkrC~KPdrkEf~kia~at~iGf~imG~IGf~IKLIh 72 (80) T 2ww9_B 24 APVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72 (80) T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8999999989999996499889999999999998999999999999731 No 8 >1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B Probab=84.80 E-value=2.1 Score=21.87 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=35.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55999999999999873489889999999999999999999999999999 Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSI 55 (67) Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~ 55 (67) ..+.+|++|.+.=+++.+=|+++|-.+...++-+-.+++|.+=+.+..++ T Consensus 10 e~l~~F~~~~~rvlk~~~KP~~~Ef~~i~k~~~iG~~i~G~IGf~Ikli~ 59 (74) T 1rh5_B 10 EQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPA 59 (74) T ss_dssp --CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999994499899999999999999999999999999999 No 9 >3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Probab=83.60 E-value=1.4 Score=22.90 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5999999999999873489889999999999999999999999 Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFL 49 (67) Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~ 49 (67) .+.+|++|.+.=+++.+=|+|+|-.+..-++-+-.++++.+=+ T Consensus 7 ~~~~F~k~~~rvlk~~~KP~~~Ef~~i~k~~~iG~~i~G~iGf 49 (61) T 3mp7_B 7 RIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGM 49 (61) T ss_dssp -CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999982699999999999999999999999999 No 10 >1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Probab=15.29 E-value=38 Score=14.97 Aligned_cols=20 Identities=5% Similarity=0.350 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCHH Q ss_conf 5999999999999873489889 Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRS 28 (67) Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~ 28 (67) -+-+||+++..+ ++.||.+. T Consensus 9 Tp~~Yf~~l~~~--~~~~Pv~~ 28 (84) T 1o7d_B 9 TPACYLWELNKA--NLSWSVKK 28 (84) T ss_dssp CHHHHHHHHHHT--CCCBCEEC T ss_pred CHHHHHHHHHHH--CCCCCCCC T ss_conf 999999999972--79997105 Done!