Query         gi|254780149|ref|YP_003064562.1| hypothetical protein CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs    103 out of 909
Neff          5.6 
Searched_HMMs 23785
Date          Mon May 23 14:25:49 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780149.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2akh_Z Preprotein translocase   99.8 4.6E-19 1.9E-23  124.3   8.8   60    6-65     50-109 (111)
  2 3dl8_C SECE; RECA-type ATPase   99.8   5E-19 2.1E-23  124.0   4.9   61    6-66      2-62  (65)
  3 3bo0_B Preprotein translocase   99.7 5.1E-18 2.1E-22  118.5   4.3   62    6-67      4-65  (65)
  4 3din_D Preprotein translocase   99.7 9.6E-19   4E-23  122.5   0.4   60    6-65      2-61  (65)
  5 2zjs_E Preprotein translocase   99.6 4.6E-18 1.9E-22  118.8  -3.0   57    6-62      3-59  (60)
  6 2wwb_B SEC61gamma, protein tra  90.0    0.75 3.2E-05   24.3   6.2   47    7-53     10-56  (68)
  7 2ww9_B Protein transport prote  89.3     1.1 4.8E-05   23.3   7.6   49    7-55     24-72  (80)
  8 1rh5_B Preprotein translocase   84.8     2.1 8.9E-05   21.9   8.1   50    6-55     10-59  (74)
  9 3mp7_B Preprotein translocase   83.6     1.4 5.8E-05   22.9   4.5   43    7-49      7-49  (61)
 10 1o7d_B Lysosomal alpha-mannosi  15.3      38  0.0016   15.0   0.8   20    7-28      9-28  (84)

No 1  
>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z
Probab=99.78  E-value=4.6e-19  Score=124.27  Aligned_cols=60  Identities=28%  Similarity=0.581  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             559999999999998734898899999999999999999999999999999999999711
Q gi|254780149|r    6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI   65 (67)
Q Consensus         6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~l   65 (67)
                      .++.+|++|++.|+|||+||||||+.++|.+|+++++++++|+|++|.+++++++.++|+
T Consensus        50 ~~~~~f~~e~r~ElkKV~WPtr~E~~~~T~vVlv~vii~~lfl~~~D~~l~~~i~~ilgl  109 (111)
T 2akh_Z           50 KATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             589999999999984386999699986999999999999999999999999999998418


No 2  
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=99.75  E-value=5e-19  Score=124.04  Aligned_cols=61  Identities=34%  Similarity=0.609  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5599999999999987348988999999999999999999999999999999999997117
Q gi|254780149|r    6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG   66 (67)
Q Consensus         6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lg   66 (67)
                      .++.+|++|+++|||||+||||+|+.++|.+|+++++++|+|++++|.++++++++++|+.
T Consensus         2 ~ki~~f~~~v~~ElkKV~WPtr~e~~~~T~vVii~~ii~a~~i~~~D~~~~~~~~~ll~l~   62 (65)
T 3dl8_C            2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLR   62 (65)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             2799999999999753779397998638998888999999999999999999999999342


No 3  
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=99.70  E-value=5.1e-18  Score=118.54  Aligned_cols=62  Identities=23%  Similarity=0.383  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             55999999999999873489889999999999999999999999999999999999971179
Q gi|254780149|r    6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIGR   67 (67)
Q Consensus         6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lgr   67 (67)
                      .+..+|++|+++|+|||+||||+|+.++|.+|++++++.+++++++|.++++++++++|++|
T Consensus         4 k~~~~f~~ev~~E~kKV~WPtr~e~~~~T~vVi~~~ii~~~~~~~~D~~~~~~~~~i~gl~~   65 (65)
T 3bo0_B            4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK   65 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88999999999997122189928877588888889999999999999999999999975139


No 4  
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=99.70  E-value=9.6e-19  Score=122.50  Aligned_cols=60  Identities=38%  Similarity=0.656  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             559999999999998734898899999999999999999999999999999999999711
Q gi|254780149|r    6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI   65 (67)
Q Consensus         6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~l   65 (67)
                      .++.+|++|+++|||||+||||+|+.++|.+|+++++++|+|+|++|++++++++.++++
T Consensus         2 ~ki~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi~~~ii~a~~l~~~D~~~~~~~~~l~~~   61 (65)
T 3din_D            2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA   61 (65)
T ss_dssp             --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             378999999999975365989799875899888899999999999999999999999947


No 5  
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=99.63  E-value=4.6e-18  Score=118.79  Aligned_cols=57  Identities=18%  Similarity=0.478  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             559999999999998734898899999999999999999999999999999999999
Q gi|254780149|r    6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI   62 (67)
Q Consensus         6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i   62 (67)
                      .++.+|++|+++|+|||+||||+|+.++|.+|+++++++++|++++|++++++++++
T Consensus         3 ~ri~~f~~ev~~ElkKV~WPtr~e~~~~T~vVi~~~~i~~~~l~~~D~~~~~~i~~i   59 (60)
T 2zjs_E            3 ARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL   59 (60)
T ss_dssp             ---------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             889999999999961277929799873999999999999999999999999999985


No 6  
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=89.99  E-value=0.75  Score=24.33  Aligned_cols=47  Identities=17%  Similarity=0.148  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59999999999998734898899999999999999999999999999
Q gi|254780149|r    7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQ   53 (67)
Q Consensus         7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~   53 (67)
                      .+.+|++|...=+||.+=|+|+|-.+...++-+--++++.+=+.+..
T Consensus        10 ~~~~F~kds~~~vkrC~KPdrkEf~ki~~a~~iGf~imG~iGf~vKL   56 (68)
T 2wwb_B           10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKL   56 (68)
T ss_dssp             THHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999899999924999899999999999849999999999885


No 7  
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=89.34  E-value=1.1  Score=23.34  Aligned_cols=49  Identities=18%  Similarity=0.018  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5999999999999873489889999999999999999999999999999
Q gi|254780149|r    7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSI   55 (67)
Q Consensus         7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~   55 (67)
                      .+.+|++|.+.=+||.+=|+++|-.+...++-+--++++++=+.+..++
T Consensus        24 ~~~~F~kds~r~vkrC~KPdrkEf~kia~at~iGf~imG~IGf~IKLIh   72 (80)
T 2ww9_B           24 APVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH   72 (80)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8999999989999996499889999999999998999999999999731


No 8  
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=84.80  E-value=2.1  Score=21.87  Aligned_cols=50  Identities=16%  Similarity=0.191  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55999999999999873489889999999999999999999999999999
Q gi|254780149|r    6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSI   55 (67)
Q Consensus         6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~   55 (67)
                      ..+.+|++|.+.=+++.+=|+++|-.+...++-+-.+++|.+=+.+..++
T Consensus        10 e~l~~F~~~~~rvlk~~~KP~~~Ef~~i~k~~~iG~~i~G~IGf~Ikli~   59 (74)
T 1rh5_B           10 EQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPA   59 (74)
T ss_dssp             --CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999994499899999999999999999999999999999


No 9  
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=83.60  E-value=1.4  Score=22.90  Aligned_cols=43  Identities=9%  Similarity=0.071  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5999999999999873489889999999999999999999999
Q gi|254780149|r    7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFL   49 (67)
Q Consensus         7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~   49 (67)
                      .+.+|++|.+.=+++.+=|+|+|-.+..-++-+-.++++.+=+
T Consensus         7 ~~~~F~k~~~rvlk~~~KP~~~Ef~~i~k~~~iG~~i~G~iGf   49 (61)
T 3mp7_B            7 RIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGM   49 (61)
T ss_dssp             -CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999982699999999999999999999999999


No 10 
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1
Probab=15.29  E-value=38  Score=14.97  Aligned_cols=20  Identities=5%  Similarity=0.350  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             5999999999999873489889
Q gi|254780149|r    7 AVLNFFKQVRDESKKIFWPSRS   28 (67)
Q Consensus         7 ~i~~f~~ev~~ElkkV~WPt~~   28 (67)
                      -+-+||+++..+  ++.||.+.
T Consensus         9 Tp~~Yf~~l~~~--~~~~Pv~~   28 (84)
T 1o7d_B            9 TPACYLWELNKA--NLSWSVKK   28 (84)
T ss_dssp             CHHHHHHHHHHT--CCCBCEEC
T ss_pred             CHHHHHHHHHHH--CCCCCCCC
T ss_conf             999999999972--79997105


Done!