RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780149|ref|YP_003064562.1| hypothetical protein
CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein-
          protein complex, ATP-binding, cell membrane; 7.50A
          {Aquifex aeolicus}
          Length = 65

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
          +  F K VRDE K++ WPSR  V+ + I VII      V+  ++D +   ++ FIL + 
Sbjct: 4  LKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLR 62


>3din_D Preprotein translocase subunit SECE; protein translocation,
          membrane protein, ATPase, ATP- binding, cytoplasm,
          inner membrane, nucleotide-binding; HET: ADP; 4.50A
          {Thermotoga maritima MSB8}
          Length = 65

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
          +  FF++V  E+KKI WPSR E+L S  VV+++L+++SV+F V+D     ++  I    
Sbjct: 4  LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKAL 62


>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex,
          protein translocation; 9.60A {Escherichia coli} PDB:
          3bo1_B
          Length = 65

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 7  AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
          A + F ++ R E +K+ WP+R       + V  + ++      +I   I     +I GI 
Sbjct: 5  ATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64

Query: 67 R 67
          +
Sbjct: 65 K 65


>2zjs_E Preprotein translocase SECE subunit; translocon, SEC,
          protein-conducting-channel, membrane, protein
          transport, translocation, transmembrane, transport;
          3.20A {Thermus thermophilus} PDB: 2zqp_E
          Length = 60

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
          ++ +F++ R E  ++ WP+R +V+     +++      V   + D    +L+  +
Sbjct: 5  LIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59


>2akh_Z Preprotein translocase SECE subunit; protein transport,
           translocation, transmembrane, transport; 14.90A
           {Escherichia coli} PDB: 2aki_Z
          Length = 111

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 7   AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI 65
           A + F ++ R E +K+ WP+R E L + ++V  + ++ S+    +D  +  L+ FI G+
Sbjct: 51  ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL 109


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.146    0.434 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 546,174
Number of extensions: 17742
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 10
Length of query: 67
Length of database: 5,693,230
Length adjustment: 37
Effective length of query: 30
Effective length of database: 4,796,202
Effective search space: 143886060
Effective search space used: 143886060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.5 bits)