BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780149|ref|YP_003064562.1| hypothetical protein
CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780149|ref|YP_003064562.1| hypothetical protein CLIBASIA_00140 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 67

 Score =  130 bits (326), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MGVNRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMH 60
          MGVNRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMH
Sbjct: 1  MGVNRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMH 60

Query: 61 FILGIGR 67
          FILGIGR
Sbjct: 61 FILGIGR 67


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 563

 Score = 20.4 bits (41), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 30 VLVSVIVVIIMLSISSVFFL 49
          +L SVI+V IML +++ FF+
Sbjct: 24 ILASVILVPIMLFMAARFFV 43


>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 20.0 bits (40), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13  KQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
           + +RD S  +   +RSE +  VI       I+    +   ++IG  M  +L  G
Sbjct: 373 RSLRDGSLGL-GATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.146    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,442
Number of Sequences: 1233
Number of extensions: 1103
Number of successful extensions: 7
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 328,796
effective HSP length: 38
effective length of query: 29
effective length of database: 281,942
effective search space:  8176318
effective search space used:  8176318
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 31 (16.5 bits)