HHsearch alignment for GI: 254780150 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=96.76 E-value=0.013 Score=35.18 Aligned_cols=120 Identities=23% Similarity=0.385 Sum_probs=68.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC----CCCCCC------CHH--HHHCCCEEEEE-------EEEE----
Q ss_conf 882799999046898878999999876444200----131268------686--98629206378-------9998----
Q gi|254780150|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKE----YGDIDS------APE--EKLRGITIATA-------HVSY---- 66 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~----~~~~D~------~~~--E~~rGiTi~~~-------~~~~---- 66 (392)
T Consensus 138 ~p~V-il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 138 KPFV-ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-LGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCEE-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH-HCCEEECCCCCCCCHHHHHHHHH
T ss_conf 8679-999934888637179999999997898699982334789999999999999-59927825999980899999999
Q ss_pred --ECCCEEEEEEECCC--C--HHHHHHH---HHHHHCCCC-----EEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEE
Q ss_conf --21990899984787--3--0246779---877400233-----1452012344332--10677888863187602331
Q gi|254780150|r 67 --ETDKRFYSHIDCPG--H--ADYVKNM---ITGATQADG-----AILVCAAEDGPKP--QTREHILLARQIGISSIVVY 130 (392)
Q Consensus 67 --~~~~~~i~iiD~PG--H--~~f~~~m---i~g~~~~D~-----ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~ 130 (392)
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~---F~eav~l~-GiI- 290 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI---FNEAVGLD-GII- 290 (340)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHH---HHHHCCCC-EEE-
T ss_conf 9997699999996755445736689999999998464568998428999775647568999999---98752886-699-
Q ss_pred ECCCCC
Q ss_conf 002333
Q gi|254780150|r 131 MNKVDA 136 (392)
Q Consensus 131 iNKmD~ 136 (392)
T Consensus 291 lTKlDg 296 (340)
T COG0552 291 LTKLDG 296 (340)
T ss_pred EEECCC
T ss_conf 970246