HHsearch alignment for GI: 254780150 and conserved domain: COG4108

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=2.1e-44  Score=294.42  Aligned_cols=273  Identities=25%  Similarity=0.363  Sum_probs=197.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHH----------HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH
Q ss_conf             9999904689887899999987----------644420013126868698629206378999821990899984787302
Q gi|254780150|r   14 GLSTIGHVDHGKTTLTAAITKY----------YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD   83 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~----------~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~   83 (392)
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCCCC
T ss_conf             03688568888511889999723034305501222577634227788887568558765787603884886147998654


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEEEEEEEEEE
Q ss_conf             46779877400233145201234433210677888863187602331002333561--2221101232100111014532
Q gi|254780150|r   84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDLLKEHKYSD  161 (392)
Q Consensus        84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~l~~~~~~~  161 (392)
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~----~~Pi  168 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQ----CAPI  168 (528)
T ss_pred             CCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCC----EECC
T ss_conf             323678999864104689860358668899999998505984-69975023656688689999999985775----0355


Q ss_pred             EEECCCCEEEE----------------------------EEE--------CCC---------------------------
Q ss_conf             21023311467----------------------------641--------144---------------------------
Q gi|254780150|r  162 DTPIIRGSALC----------------------------ALQ--------GTN---------------------------  178 (392)
Q Consensus       162 ~~pii~~sa~~----------------------------g~~--------~~n---------------------------  178 (392)
T Consensus       169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G  248 (528)
T COG4108         169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG  248 (528)
T ss_pred             CCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
T ss_conf             24456885643223503587998426777654434444578886777762447999999999999741332088988569


Q ss_pred             --------CCCCCCCCCCHHHHHHCCCCCCCC-CCC-----------CCCCEECCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             --------456521233203443102522221-000-----------011000000013554454301487424534896
Q gi|254780150|r  179 --------KELGEDSIHALMKAVDTHIPTPQR-SLD-----------APFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGS  238 (392)
Q Consensus       179 --------~~~~~~~~~~Ll~~i~~~~~~p~~-~~~-----------~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd  238 (392)
T Consensus       249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRV~SGkferGM  328 (528)
T COG4108         249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM  328 (528)
T ss_pred             CCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             60115703323115889999999963899865446667316887754348999974899433420367863056435886


Q ss_pred             EEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC
Q ss_conf             799950687432125412100-121144321001366641124543220211773267
Q gi|254780150|r  239 DVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG  295 (392)
Q Consensus       239 ~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~  295 (392)
T Consensus       329 k~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhGt~~IGDT~t~Ge  382 (528)
T COG4108         329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGE  382 (528)
T ss_pred             EEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCEEECC----CCCCEEECCEECCCC
T ss_conf             533024487256161076764216657542687767146----787213266631585