HHsearch alignment for GI: 254780150 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.87 E-value=0.00011 Score=48.19 Aligned_cols=125 Identities=23% Similarity=0.336 Sum_probs=72.5
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC--H-HHH------HCCCEEEEE----------EEE
Q ss_conf 103882799999046898878999999876444200131--2686--8-698------629206378----------999
Q gi|254780150|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA--P-EEK------LRGITIATA----------HVS 65 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~--~-~E~------~rGiTi~~~----------~~~ 65 (392)
T Consensus 93 ~~~kP~V-im~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~i~~~a 171 (433)
T PRK00771 93 ILLKPQT-ILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKEKDAVKIVKEG 171 (433)
T ss_pred CCCCCEE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 6689858-999737889789999999999997799467850678836899999999986388731788999999999999
Q ss_pred E-ECCCEEEEEEECCCC----HHHHHHH--HHHHHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 8-219908999847873----0246779--8774002331452012344332--10677888863187602331002333
Q gi|254780150|r 66 Y-ETDKRFYSHIDCPGH----ADYVKNM--ITGATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 66 ~-~~~~~~i~iiD~PGH----~~f~~~m--i~g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
T Consensus 172 ~~~~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~---~F~~~~~i~-gvI-lTKlDg 246 (433)
T PRK00771 172 LEKLKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAK---AFKEAVGIG-GII-ITKLDG 246 (433)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH---HHHHHCCCC-EEE-EECCCC
T ss_conf 998456988999776521040999999999987757976899865442267899999---998753887-379-972567
Q ss_pred C
Q ss_conf 5
Q gi|254780150|r 137 V 137 (392)
Q Consensus 137 v 137 (392)
T Consensus 247 d 247 (433)
T PRK00771 247 T 247 (433)
T ss_pred C
T ss_conf 8