HHsearch alignment for GI: 254780150 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.24 E-value=0.0017 Score=40.82 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=50.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHH------HCCCEEEEEEEE---------E-ECCCEEE
Q ss_conf 9999046898878999999876444200131--2686---8698------629206378999---------8-2199089
Q gi|254780150|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEK------LRGITIATAHVS---------Y-ETDKRFY 73 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~------~rGiTi~~~~~~---------~-~~~~~~i 73 (392)
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av~~~a~~~~~Dv 288 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDH 288 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCE
T ss_conf 99989998978999999999999779917999706677889999999999979649981888999999999986289998
Q ss_pred EEEECCC--C--HHHHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 9984787--3--0246779--8774002331452012344332106778888631876023310023335
Q gi|254780150|r 74 SHIDCPG--H--ADYVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 74 ~iiD~PG--H--~~f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
T Consensus 289 VIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~qa-~~~~~~v~ItG-iI-LTKLDgt 355 (407)
T PRK12726 289 ILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTI-LPKLAEIPIDG-FI-ITKMDET 355 (407)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHHHCCCCCCE-EE-EEECCCC
T ss_conf 99969998813499999999987332896699993675669999999-98704799987-99-9701478