HHsearch alignment for GI: 254780150 and conserved domain: TIGR00436

>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=97.27  E-value=0.00096  Score=42.29  Aligned_cols=144  Identities=19%  Similarity=0.201  Sum_probs=85.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE-EEEEECCC-CHH--------
Q ss_conf             99999046898878999999876444200131268686986292063789998219908-99984787-302--------
Q gi|254780150|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF-YSHIDCPG-HAD--------   83 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~-i~iiD~PG-H~~--------   83 (392)
T Consensus         2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~d~pg~~~~~~~~~~~~   70 (278)
T TIGR00436         2 FVAILGRPNVGKSTLLNKLLGQKISITSP---KPQTTRNRISGI--------LTTGASQNIIFIDTPGFHEPEKHKLGEL   70 (278)
T ss_pred             CEEECCCCCCCHHHHHHHHHCCCHHCCCC---CCHHHHHHHHEE--------EECCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             11211577653366777663241010023---101234332001--------2236655157862587651245677888


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC-CCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf             467798774002331452012344332106778888631876023310023335-6122211012321001110145322
Q gi|254780150|r   84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV-DDDELLDISEYEIRDLLKEHKYSDD  162 (392)
Q Consensus        84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v-~~~~~~~~i~~~i~~~l~~~~~~~~  162 (392)
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~  144 (278)
T TIGR00436        71 LNKEARSALGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRP-VLLTLNKLDNKNFPDKLLPLL----DKYAGLEDFK-P  144 (278)
T ss_pred             HHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCH-HHHHHHHHHHCCHHHHHHHHH----HHHHHHHCCC-C
T ss_conf             888887531232268898633445564046889876520210-100122333101035677777----6665542046-7


Q ss_pred             EECCCCEEEEEE
Q ss_conf             102331146764
Q gi|254780150|r  163 TPIIRGSALCAL  174 (392)
Q Consensus       163 ~pii~~sa~~g~  174 (392)
T Consensus       145 ~~~~~~~~~~~~  156 (278)
T TIGR00436       145 WPIVPISALKGD  156 (278)
T ss_pred             CCEEEHHHHHHC
T ss_conf             520110112100