HHsearch alignment for GI: 254780150 and conserved domain: TIGR00487
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.90 E-value=2.1e-23 Score=164.22 Aligned_cols=235 Identities=27% Similarity=0.340 Sum_probs=164.7
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCE--EEEEEECCCCHHHH
Q ss_conf 0388279999904689887899999987644420013126868698629206378999821990--89998478730246
Q gi|254780150|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKR--FYSHIDCPGHADYV 85 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~iiD~PGH~~f~ 85 (392)
T Consensus 87 ~~~pp~-~~~~gh~dhg~~~ll~~~~~~~~~------------~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f~ 153 (594)
T TIGR00487 87 VPRPPV-VTIMGHVDHGKTSLLDSIRKTKVA------------AGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAFT 153 (594)
T ss_pred HCCCCE-EEEEECCCCCCHHHHHHHHHCCCC------------CCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHHH
T ss_conf 024763-688512355403456555410000------------1113652010130456642884379984077536778
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEE
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001-11014532210
Q gi|254780150|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTP 164 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~p 164 (392)
T Consensus 154 ~~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p-~~~~~n~~d~p~~~--pd~~~~~~~~~g~~~~~wgg~~~ 230 (594)
T TIGR00487 154 LMRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVP-LIVAVNKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTI 230 (594)
T ss_pred HHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCCHHCCCCEE
T ss_conf 7763376100157999841556423568876533330773-69986124676678--77899998751775011278346
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC--CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf 233114676411444565212332034431025--222210000110000000135544543014874245348967999
Q gi|254780150|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHI--PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEI 242 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~--~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i 242 (392)
T Consensus 231 ~~~~~~~~g~----------g~~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~ 300 (594)
T TIGR00487 231 FVPVSALTGD----------GIDELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVL 300 (594)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEE
T ss_conf 8862001367----------657888888876434443203232222025641001365632456661472011641352
Q ss_pred EECCCCCCCEEEECCCCC-CCCCCCCCCCHHH
Q ss_conf 506874321254121001-2114432100136
Q gi|254780150|r 243 IGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNV 273 (392)
Q Consensus 243 ~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v 273 (392)
T Consensus 301 g~~-----~g~~~~~~~~~g~~~~~~~p~~~~ 327 (594)
T TIGR00487 301 GAA-----YGKVRALIDENGKSVKEAGPSKPV 327 (594)
T ss_pred ECC-----CCHHHHHHHHCCCHHHHCCCCCEE
T ss_conf 032-----110000120024211212765215