HHsearch alignment for GI: 254780150 and conserved domain: TIGR00487

>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.90  E-value=2.1e-23  Score=164.22  Aligned_cols=235  Identities=27%  Similarity=0.340  Sum_probs=164.7

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCE--EEEEEECCCCHHHH
Q ss_conf             0388279999904689887899999987644420013126868698629206378999821990--89998478730246
Q gi|254780150|r    8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKR--FYSHIDCPGHADYV   85 (392)
Q Consensus         8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~iiD~PGH~~f~   85 (392)
T Consensus        87 ~~~pp~-~~~~gh~dhg~~~ll~~~~~~~~~------------~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f~  153 (594)
T TIGR00487        87 VPRPPV-VTIMGHVDHGKTSLLDSIRKTKVA------------AGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAFT  153 (594)
T ss_pred             HCCCCE-EEEEECCCCCCHHHHHHHHHCCCC------------CCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHHH
T ss_conf             024763-688512355403456555410000------------1113652010130456642884379984077536778


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEE
Q ss_conf             77987740023314520123443321067788886318760233100233356122211012321001-11014532210
Q gi|254780150|r   86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTP  164 (392)
Q Consensus        86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~p  164 (392)
T Consensus       154 ~~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p-~~~~~n~~d~p~~~--pd~~~~~~~~~g~~~~~wgg~~~  230 (594)
T TIGR00487       154 LMRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVP-LIVAVNKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTI  230 (594)
T ss_pred             HHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCCHHCCCCEE
T ss_conf             7763376100157999841556423568876533330773-69986124676678--77899998751775011278346


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC--CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf             233114676411444565212332034431025--222210000110000000135544543014874245348967999
Q gi|254780150|r  165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHI--PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEI  242 (392)
Q Consensus       165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~--~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i  242 (392)
T Consensus       231 ~~~~~~~~g~----------g~~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~  300 (594)
T TIGR00487       231 FVPVSALTGD----------GIDELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVL  300 (594)
T ss_pred             EEEEECCCCC----------CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEE
T ss_conf             8862001367----------657888888876434443203232222025641001365632456661472011641352


Q ss_pred             EECCCCCCCEEEECCCCC-CCCCCCCCCCHHH
Q ss_conf             506874321254121001-2114432100136
Q gi|254780150|r  243 IGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNV  273 (392)
Q Consensus       243 ~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v  273 (392)
T Consensus       301 g~~-----~g~~~~~~~~~g~~~~~~~p~~~~  327 (594)
T TIGR00487       301 GAA-----YGKVRALIDENGKSVKEAGPSKPV  327 (594)
T ss_pred             ECC-----CCHHHHHHHHCCCHHHHCCCCCEE
T ss_conf             032-----110000120024211212765215