HHsearch alignment for GI: 254780150 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.01 E-value=0.0044 Score=38.20 Aligned_cols=121 Identities=20% Similarity=0.273 Sum_probs=63.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC--EEEEEEEEEECCCEEEEEEECCCC----------
Q ss_conf 99999046898878999999876444200131268686986292--063789998219908999847873----------
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGI--TIATAHVSYETDKRFYSHIDCPGH---------- 81 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGi--Ti~~~~~~~~~~~~~i~iiD~PGH---------- 81 (392)
T Consensus 113 WYlviG~~gsGKTt~l~~S-g------l~fPl~~~~~~~~~~g~ggt~~cd-wwf-t~~--AVliDtaGry~~Q~~~~~~ 181 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-G------LKFPLAERLGAAALRGVGGTRNCD-WWF-TDE--AVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred EEEEECCCCCCHHHHHHHC-C------CCCCCCCCCCHHHCCCCCCCCCCC-EEE-ECC--EEEEECCCCEECCCCCCHH
T ss_conf 5899789998668999837-9------988774100112215889985557-165-278--7999479760268886400
Q ss_pred -----HHHHHHHH--HHHHCCCCEEEEECCCC---CCCCCHHHHHHH--------HHHCCCC-CEEEEECCCCCCC-CHH
Q ss_conf -----02467798--77400233145201234---433210677888--------8631876-0233100233356-122
Q gi|254780150|r 82 -----ADYVKNMI--TGATQADGAILVCAAED---GPKPQTREHILL--------ARQIGIS-SIVVYMNKVDAVD-DDE 141 (392)
Q Consensus 82 -----~~f~~~mi--~g~~~~D~ailvVda~~---G~~~QT~eh~~l--------~~~lgi~-~iIv~iNKmD~v~-~~~ 141 (392)
T Consensus 182 d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~GF~e 261 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFEE 261 (1169)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHH
T ss_conf 18999999999986489899876899978999747899999999999999999999982998775998664012306999
Q ss_pred HHHH
Q ss_conf 2110
Q gi|254780150|r 142 LLDI 145 (392)
Q Consensus 142 ~~~~ 145 (392)
T Consensus 262 ff~~ 265 (1169)
T TIGR03348 262 FFAD 265 (1169)
T ss_pred HHHH
T ss_conf 9985