HHsearch alignment for GI: 254780150 and conserved domain: cd00876
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.82 E-value=1.4e-08 Score=72.33 Aligned_cols=135 Identities=27% Similarity=0.278 Sum_probs=81.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECC--CEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999904689887899999987644420013126868698629206-3789998219--9089998478730246779877
Q gi|254780150|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETD--KRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~g 91 (392)
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f~--------~----~~--~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~ 67 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFV--------E----EY--DPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLY 67 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--------C----CC--CCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 999996996799999999619599--------8----77--883004899999976699999999799962355788999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHH----H-HHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 4002331452012344332106778----8-88631---87602331002333561222110123210011101453221
Q gi|254780150|r 92 ATQADGAILVCAAEDGPKPQTREHI----L-LARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~----~-l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
T Consensus 68 ~~~a~~~ilvfd~~~~---~Sf~~i~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~---V~~~e~~~~a~~~----~~ 136 (160)
T cd00876 68 IRQGDGFILVYSITDR---ESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQ---VSKEEGKALAKEW----GC 136 (160)
T ss_pred HHHCCEEEEEECCCCH---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHCCC---CCHHHHHHHHHHC----CC
T ss_conf 7643689997328987---89999999999999972878862-999997456223078---9999999999984----99
Q ss_pred ECCCCEEEEEE
Q ss_conf 02331146764
Q gi|254780150|r 164 PIIRGSALCAL 174 (392)
Q Consensus 164 pii~~sa~~g~ 174 (392)
T Consensus 137 ~y~e~Sak~g~ 147 (160)
T cd00876 137 PFIETSAKDNI 147 (160)
T ss_pred EEEEECCCCCC
T ss_conf 79998479894