HHsearch alignment for GI: 254780150 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=313.88 Aligned_cols=175 Identities=39% Similarity=0.637 Sum_probs=147.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHH----CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 9999904689887899999987644420----013126868698629206378999821990899984787302467798
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKK----EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~----~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998188999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE----------
Q ss_conf 7740023314520123443321067788886318760233100233356122211012321001110145----------
Q gi|254780150|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY---------- 159 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~---------- 159 (392)
T Consensus 81 ~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p-~iv~iNKiD~~~~~~-~~~~~~ei~~~l~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEED-LEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHH-HHHHHHHHHHHHHHHCCHHHHHHCCCC
T ss_conf 998646856999987989987899999999976998-799998971877562-999999999998753210232110125
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 32210233114676411444565212332034431025222
Q gi|254780150|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
T Consensus 159 ~~~~piv~iSA~~G~----------gv~~Lld~i~~~lP~p 189 (189)
T cd00881 159 GLLVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred CCCCEEEEEECCCCC----------CHHHHHHHHHHHCCCC
T ss_conf 887759998886786----------9799999999768799