HHsearch alignment for GI: 254780150 and conserved domain: cd01860
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.96 E-value=2.8e-09 Score=76.63 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=86.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE--EEEECC--CEEEEEEECCCCHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789--998219--9089998478730246779
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH--VSYETD--KRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~--~~~i~iiD~PGH~~f~~~m 88 (392)
T Consensus 2 ~KivviGd~~vGKTsli~r~~~~------------~f~~~~~--~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN------------EFSENQE--STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCCC--CCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 79999995996899999999439------------8999868--866678899999999999999999799971002788
Q ss_pred HHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 877400233145201234433-2106778888631---876023310023335612221101232100111014532210
Q gi|254780150|r 89 ITGATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
T Consensus 68 ~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~-iilVgnK~DL~~~r~---V~~~e~~~~a~~~----~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQ---VSTEEAQEYADEN----GLL 139 (163)
T ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHCCC---CCHHHHHHHHHHC----CCE
T ss_conf 98851677149998189979999999999999985598723-677553357565089---9999999999982----997
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 233114676411444565212332034431025
Q gi|254780150|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
T Consensus 140 ~~E~SAk~~~----------nV~e~F~~l~~~i 162 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKL 162 (163)
T ss_pred EEEECCCCCC----------CHHHHHHHHHHHC
T ss_conf 9998626590----------7899999999858