HHsearch alignment for GI: 254780150 and conserved domain: cd01862

>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.90  E-value=2.6e-09  Score=76.83  Aligned_cols=141  Identities=19%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf             799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         1 ~KivlvGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~   68 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNK------------KFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVA   68 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf             98999998997899999999529------------889875775551699999999999999999969998311068899


Q ss_pred             HHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHHC------CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf             740023314520123443321067788-----88631------8760233100233356122211012321001110145
Q gi|254780150|r   91 GATQADGAILVCAAEDGPKPQTREHIL-----LARQI------GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY  159 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~l------gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~  159 (392)
T Consensus        69 ~~~~a~~~ilvydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~p-iilvgNK~Dl~~~r~---V~~~e~~~~a~~~~-  140 (172)
T cd01862          69 FYRGADCCVLVYDVTN---PKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQ---VSTKKAQQWCQSNG-  140 (172)
T ss_pred             HHHHCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEEECCCHHHCCC---CCHHHHHHHHHHCC-
T ss_conf             8652757999933899---899999999999999972767765763-899963368364189---99999999999769-


Q ss_pred             EEEEECCCCEEEEEEE
Q ss_conf             3221023311467641
Q gi|254780150|r  160 SDDTPIIRGSALCALQ  175 (392)
Q Consensus       160 ~~~~pii~~sa~~g~~  175 (392)
T Consensus       141 --~~~~~E~SAk~~~n  154 (172)
T cd01862         141 --NIPYFETSAKEAIN  154 (172)
T ss_pred             --CCEEEEECCCCCCC
T ss_conf             --97899975267919