HHsearch alignment for GI: 254780150 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=0 Score=388.67 Aligned_cols=186 Identities=40% Similarity=0.578 Sum_probs=161.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHH-----------HHHHHHCCC--------CCCCCHHHHHCCCEEEEEEEEEECCCEEEE
Q ss_conf 9999904689887899999987-----------644420013--------126868698629206378999821990899
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKY-----------YSEEKKEYG--------DIDSAPEEKLRGITIATAHVSYETDKRFYS 74 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~-----------~~~~~~~~~--------~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ 74 (392)
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCCHHHHHHHHHHCCCCCEEEEECCCCCC--CCH-HHHH
Q ss_conf 984787302467798774002331452012344-------332106778888631876023310023335--612-2211
Q gi|254780150|r 75 HIDCPGHADYVKNMITGATQADGAILVCAAEDG-------PKPQTREHILLARQIGISSIVVYMNKVDAV--DDD-ELLD 144 (392)
Q Consensus 75 iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G-------~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v--~~~-~~~~ 144 (392)
T Consensus 81 iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 98789726678899987753166899998576751036677765999999999849974899998753688652599999
Q ss_pred HCCCCCCEEEEEEEEEE-EEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 01232100111014532-2102331146764114--44565212332034431025222
Q gi|254780150|r 145 ISEYEIRDLLKEHKYSD-DTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 145 ~i~~~i~~~l~~~~~~~-~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
T Consensus 161 ~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~~s~~m~WY~GptLl~~Ld~~-~~p 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSL-EPP 218 (219)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCC
T ss_conf 9999999999982999566159993367663046678899898781699998478-998