HHsearch alignment for GI: 254780150 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=0 Score=398.43 Aligned_cols=190 Identities=61% Similarity=0.965 Sum_probs=173.9
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHH----CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 8279999904689887899999987644420----013126868698629206378999821990899984787302467
Q gi|254780150|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKK----EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~----~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
T Consensus 1 p~~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHH
T ss_conf 93799999605886989999999988663444411200100546665058861441899960881699626896077888
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE-EEEC
Q ss_conf 798774002331452012344332106778888631876023310023335612221101232100111014532-2102
Q gi|254780150|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD-DTPI 165 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~-~~pi 165 (392)
T Consensus 81 ~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~~~p~ 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99863511362689985277874789999999998099962799968778987899999999999999842999556829
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 33114676411444565212332034431025222
Q gi|254780150|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
T Consensus 161 ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~P 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99773875357888755369999999999648998