HHsearch alignment for GI: 254780150 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=0 Score=347.12 Aligned_cols=169 Identities=35% Similarity=0.532 Sum_probs=142.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC------------------------
Q ss_conf 79999904689887899999987644420013126868698629206378999821------------------------
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET------------------------ 68 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~------------------------ 68 (392)
T Consensus 1 vNi~iiGHVDhGKSTLi~~L~g~---------~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV---------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECE 71 (203)
T ss_pred CEEEEEEEECCCHHHHHHHHHCC---------CHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 96999988578799999997085---------124407888677603111456666511121223101111012442145
Q ss_pred ---------CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf ---------9908999847873024677987740023314520123443-321067788886318760233100233356
Q gi|254780150|r 69 ---------DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 69 ---------~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 72 ~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~ 151 (203)
T cd01888 72 CPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred ECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 31456543112479998689879999999976643476689864366775077999999999849986367750777788
Q ss_pred CHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 1222110123210011101453221023311467641144456521233203443102522221
Q gi|254780150|r 139 DDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 139 ~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
T Consensus 152 ~~~~~~-~~~ei~~~l~~~~~-~~~~iIPiSA~~G~----------NI~~ll~~i~~~ip~P~~ 203 (203)
T cd01888 152 EEQALE-NYEQIKKFVKGTIA-ENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred HHHHHH-HHHHHHHHHCCCCC-CCCEEEEEECCCCC----------CHHHHHHHHHHHCCCCCC
T ss_conf 678999-99999998552168-99859991478897----------999999999867829999