HHsearch alignment for GI: 254780150 and conserved domain: cd03697
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.85 E-value=3.4e-22 Score=156.69 Aligned_cols=87 Identities=64% Similarity=1.010 Sum_probs=82.2
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
Q ss_conf 10000000135544543014874245348967999506874321254121001211443210013666411245432202
Q gi|254780150|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPR 287 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~r 287 (392)
T Consensus 1 F~m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~~-~~~~~~V~sIq~~~~~v~~a~aG~rv~l~l~gi~~~~i~r 79 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFG-ETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVER 79 (87)
T ss_pred CEEEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECCC-CCCEEEEEEEHHCCCCCCCCCCCCEEEEEECCCCHHHCCC
T ss_conf 973681699669868999999552608479999997289-9718999990871943353798679999985888898377
Q ss_pred HHEEECCC
Q ss_conf 11773267
Q gi|254780150|r 288 GRVVCAPG 295 (392)
Q Consensus 288 Gdvl~~~~ 295 (392)
T Consensus 80 G~vl~~pG 87 (87)
T cd03697 80 GMVLAKPG 87 (87)
T ss_pred CCEEECCC
T ss_conf 03994799