HHsearch alignment for GI: 254780150 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.24 E-value=1.4e-05 Score=53.64 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-----CCEEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821-----9908999847873024677
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-----DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~iiD~PGH~~f~~~ 87 (392)
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f--------~~~--~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery-~s 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV--------LGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-KS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--------CCC--CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHH-HH
T ss_conf 9899999999899999999983988--------888--888503678999999337876783899999989987757-76
Q ss_pred HHHH-HHCCCCEEEEECCCCCCCCCHHHHH-----HH---------------------HHHCCCCCEEEEECCCCCCCCH
Q ss_conf 9877-4002331452012344332106778-----88---------------------8631876023310023335612
Q gi|254780150|r 88 MITG-ATQADGAILVCAAEDGPKPQTREHI-----LL---------------------ARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 88 mi~g-~~~~D~ailvVda~~G~~~QT~eh~-----~l---------------------~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
T Consensus 70 l~~~yYr~a~gvILVyDvTnr---~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vP-ilvVGtK~D~~~~r 145 (202)
T cd04102 70 TRAVFYNQVNGIILVHDLTNR---KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECHHHCCCC
T ss_conf 789975889899999989498---99986999999997536766654556665553334678975-89997606524343