HHsearch alignment for GI: 254780150 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.78 E-value=5.9e-09 Score=74.57 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=97.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE-EEEEEEC-CCEEEEEEECCC-------CHH
Q ss_conf 7999990468988789999998764442001312686869862920637-8999821-990899984787-------302
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT-AHVSYET-DKRFYSHIDCPG-------HAD 83 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~-~~~~~~~-~~~~i~iiD~PG-------H~~ 83 (392)
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl-~~~d~~aA~t---------Gv~eTT~~~~~Y~~p~~pnv~lwDlPG~Gt~~f~~~~ 71 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGV-GHEEEGAAPT---------GVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDD 71 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCCCCCC---------CCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 17999558998689999998688-9887775888---------8874677862047999998769728999987659899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH-HHHHHHCCCCCEEEEECCCCCCCC------------HHHHHHCCCCC
Q ss_conf 46779877400233145201234433210677-888863187602331002333561------------22211012321
Q gi|254780150|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREH-ILLARQIGISSIVVYMNKVDAVDD------------DELLDISEYEI 150 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh-~~l~~~lgi~~iIv~iNKmD~v~~------------~~~~~~i~~~i 150 (392)
T Consensus 72 Yl~~~--~~~~yD~fiiiss~---rf~~nd~~la~~i~~~gK~-fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c 145 (197)
T cd04104 72 YLEEM--KFSEYDFFIIISST---RFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred HHHHC--CCCCCCEEEEEECC---CCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99865--85545789998388---6414269999999980992-899986121400056637876659999999999999
Q ss_pred CEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 0011101453221023311467641144456521233203443102522221
Q gi|254780150|r 151 RDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 151 ~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
T Consensus 146 ~~~L~~~gv~-~p~VFLvS~~--------~~~~yDFp~L~~tl~~~Lp~~kr 188 (197)
T cd04104 146 LENLQEAGVS-EPPVFLVSNF--------DPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHHHHCCCC-CCCEEEEECC--------CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999986999-9998999379--------82207768999999998089889