HHsearch alignment for GI: 254780150 and conserved domain: cd04109

>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.40  E-value=1.3e-06  Score=60.13  Aligned_cols=136  Identities=17%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEEC--C-CEEEEEEECCCCHHHHHHH
Q ss_conf             9999904689887899999987644420013126868698629206--378999821--9-9089998478730246779
Q gi|254780150|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYET--D-KRFYSHIDCPGHADYVKNM   88 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~--~-~~~i~iiD~PGH~~f~~~m   88 (392)
T Consensus         2 KvvllGd~~VGKTSli~rf~~~~------------F~~~--y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe~~~~-~   66 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEG------------FGKS--YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK-M   66 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHH-H
T ss_conf             79999999970999999997498------------9887--7886557889999998799469999996998500237-8


Q ss_pred             HHH-HHCCCCEEEEECCCCCCCCCHHHHHH----HH----HHCC-CCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf             877-40023314520123443321067788----88----6318-76023310023335612221101232100111014
Q gi|254780150|r   89 ITG-ATQADGAILVCAAEDGPKPQTREHIL----LA----RQIG-ISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK  158 (392)
Q Consensus        89 i~g-~~~~D~ailvVda~~G~~~QT~eh~~----l~----~~lg-i~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~  158 (392)
T Consensus        67 ~~~y~~~a~~~ilVYDitn~---~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~--~R-~Vs~ee~~~~A~~~-  139 (215)
T cd04109          67 LDKYIYGAHAVFLVYDVTNS---QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH--NR-TVKDDKHARFAQAN-  139 (215)
T ss_pred             HHHHHHHHCCEEEECCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHH--HC-CCCHHHHHHHHHHC-
T ss_conf             99999751513774147867---8999899999999998504577852999975454286--47-76999999999982-


Q ss_pred             EEEEEECCCCEEEEEE
Q ss_conf             5322102331146764
Q gi|254780150|r  159 YSDDTPIIRGSALCAL  174 (392)
Q Consensus       159 ~~~~~pii~~sa~~g~  174 (392)
T Consensus       140 ---g~~f~E~SAktg~  152 (215)
T cd04109         140 ---GMESCLVSAKTGD  152 (215)
T ss_pred             ---CCEEEEEECCCCC
T ss_conf             ---9989998389994