HHsearch alignment for GI: 254780150 and conserved domain: cd04120

>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.66  E-value=3.8e-08  Score=69.57  Aligned_cols=141  Identities=21%  Similarity=0.185  Sum_probs=81.1

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf             79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         1 lKIvllGd~gVGKTsLi~rf~~~------------~F~~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~   68 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDD------------TFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSA   68 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf             98999997997299999999549------------999987997646889999999999999999979886124523578


Q ss_pred             HHHCCCCEEEEECCCCCCCCCHHHHH----HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf             74002331452012344332106778----88863---187602331002333561222110123210011101453221
Q gi|254780150|r   91 GATQADGAILVCAAEDGPKPQTREHI----LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT  163 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~~QT~eh~----~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~  163 (392)
T Consensus        69 yyr~a~~~ilVyDit~~---~SF~~l~~W~~~i~~~~~~~~~-iiLVGNK~DL~~~R~---Vs~~e~~~~A~~~~---~~  138 (202)
T cd04120          69 YYRSAKGIILVYDITKK---ETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDRE---ISRQQGEKFAQQIT---GM  138 (202)
T ss_pred             HHHHHCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHHCC---CCHHHHHHHHHHCC---CC
T ss_conf             87641445899856888---9999999999999974668871-898765365053178---79999999998279---98


Q ss_pred             ECCCCEEEEEEE
Q ss_conf             023311467641
Q gi|254780150|r  164 PIIRGSALCALQ  175 (392)
Q Consensus       164 pii~~sa~~g~~  175 (392)
T Consensus       139 ~f~EtSAkt~~n  150 (202)
T cd04120         139 RFCEASAKDNFN  150 (202)
T ss_pred             EEEECCCCCCCC
T ss_conf             899925899969