HHsearch alignment for GI: 254780150 and conserved domain: cd04120
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.66 E-value=3.8e-08 Score=69.57 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=81.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 1 lKIvllGd~gVGKTsLi~rf~~~------------~F~~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~ 68 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDD------------TFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSA 68 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 98999997997299999999549------------999987997646889999999999999999979886124523578
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH----HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 74002331452012344332106778----88863---187602331002333561222110123210011101453221
Q gi|254780150|r 91 GATQADGAILVCAAEDGPKPQTREHI----LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~----~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
T Consensus 69 yyr~a~~~ilVyDit~~---~SF~~l~~W~~~i~~~~~~~~~-iiLVGNK~DL~~~R~---Vs~~e~~~~A~~~~---~~ 138 (202)
T cd04120 69 YYRSAKGIILVYDITKK---ETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDRE---ISRQQGEKFAQQIT---GM 138 (202)
T ss_pred HHHHHCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHHCC---CCHHHHHHHHHHCC---CC
T ss_conf 87641445899856888---9999999999999974668871-898765365053178---79999999998279---98
Q ss_pred ECCCCEEEEEEE
Q ss_conf 023311467641
Q gi|254780150|r 164 PIIRGSALCALQ 175 (392)
Q Consensus 164 pii~~sa~~g~~ 175 (392)
T Consensus 139 ~f~EtSAkt~~n 150 (202)
T cd04120 139 RFCEASAKDNFN 150 (202)
T ss_pred EEEECCCCCCCC
T ss_conf 899925899969