HHsearch alignment for GI: 254780150 and conserved domain: cd04131

>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30  E-value=4.2e-06  Score=56.91  Aligned_cols=142  Identities=19%  Similarity=0.157  Sum_probs=79.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf             799999046898878999999876444200131268686986292063789-9982199--0899984787302467798
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         2 ~KivlvGd~~VGKTsLi~r~~~~------------~F~~~--y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~l~~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKD------------CYPET--YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRP   67 (178)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHCCHHH
T ss_conf             09999999997789999999639------------99998--57856888899999999999999996898742110366


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHH----HH-HHHH--CCCCCEEEEECCCCCCCCHH-HHH--------HCCCCCCEE
Q ss_conf             77400233145201234433210677----88-8863--18760233100233356122-211--------012321001
Q gi|254780150|r   90 TGATQADGAILVCAAEDGPKPQTREH----IL-LARQ--IGISSIVVYMNKVDAVDDDE-LLD--------ISEYEIRDL  153 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~~~QT~eh----~~-l~~~--lgi~~iIv~iNKmD~v~~~~-~~~--------~i~~~i~~~  153 (392)
T Consensus        68 ~~y~~a~~~ilvydit~~---~Sf~~v~~~W~~ei~~~~~~~~-iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~  143 (178)
T cd04131          68 LCYPDSDAVLICFDISRP---ETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAI  143 (178)
T ss_pred             HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             773468789999737987---8899999999999998687998-899998543664445566776446777689999999


Q ss_pred             EEEEEEEEEEECCCCEEEEEEE
Q ss_conf             1101453221023311467641
Q gi|254780150|r  154 LKEHKYSDDTPIIRGSALCALQ  175 (392)
Q Consensus       154 l~~~~~~~~~pii~~sa~~g~~  175 (392)
T Consensus       144 A~~~g---a~~y~EtSAktg~n  162 (178)
T cd04131         144 AKQLG---AEIYLECSAFTSEK  162 (178)
T ss_pred             HHHCC---CCEEEECCCCCCCC
T ss_conf             99749---98999978486873