HHsearch alignment for GI: 254780150 and conserved domain: cd04131
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=4.2e-06 Score=56.91 Aligned_cols=142 Identities=19% Similarity=0.157 Sum_probs=79.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789-9982199--0899984787302467798
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~------------~F~~~--y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~l~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD------------CYPET--YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHCCHHH
T ss_conf 09999999997789999999639------------99998--57856888899999999999999996898742110366
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHH----HH-HHHH--CCCCCEEEEECCCCCCCCHH-HHH--------HCCCCCCEE
Q ss_conf 77400233145201234433210677----88-8863--18760233100233356122-211--------012321001
Q gi|254780150|r 90 TGATQADGAILVCAAEDGPKPQTREH----IL-LARQ--IGISSIVVYMNKVDAVDDDE-LLD--------ISEYEIRDL 153 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh----~~-l~~~--lgi~~iIv~iNKmD~v~~~~-~~~--------~i~~~i~~~ 153 (392)
T Consensus 68 ~~y~~a~~~ilvydit~~---~Sf~~v~~~W~~ei~~~~~~~~-iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~ 143 (178)
T cd04131 68 LCYPDSDAVLICFDISRP---ETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAI 143 (178)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 773468789999737987---8899999999999998687998-899998543664445566776446777689999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEE
Q ss_conf 1101453221023311467641
Q gi|254780150|r 154 LKEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~ 175 (392)
T Consensus 144 A~~~g---a~~y~EtSAktg~n 162 (178)
T cd04131 144 AKQLG---AEIYLECSAFTSEK 162 (178)
T ss_pred HHHCC---CCEEEECCCCCCCC
T ss_conf 99749---98999978486873