HHsearch alignment for GI: 254780150 and conserved domain: cd04135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.46 E-value=4.2e-07 Score=63.13 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=80.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-E--EECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-9--821990899984787302467798
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-S--YETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~--~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~------------f~~~--y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA------------FPEE--YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHH
T ss_conf 989999989985999999996298------------9988--68857520227999999999999997976403155659
Q ss_pred HHHHCCCCEEEEECCCC-CCCCCHHHHH-HHHHH--CCCCCEEEEECCCCCCCCHHHHH---------HCCCCCCEEEEE
Q ss_conf 77400233145201234-4332106778-88863--18760233100233356122211---------012321001110
Q gi|254780150|r 90 TGATQADGAILVCAAED-GPKPQTREHI-LLARQ--IGISSIVVYMNKVDAVDDDELLD---------ISEYEIRDLLKE 156 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~-G~~~QT~eh~-~l~~~--lgi~~iIv~iNKmD~v~~~~~~~---------~i~~~i~~~l~~ 156 (392)
T Consensus 67 ~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~p-iilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~ 145 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9855787678984379778899999999999998684998-899968523004434554530045766399999999997
Q ss_pred EEEEEEEECCCCEEEEEE
Q ss_conf 145322102331146764
Q gi|254780150|r 157 HKYSDDTPIIRGSALCAL 174 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~ 174 (392)
T Consensus 146 ~g~---~~f~E~SAkt~~ 160 (174)
T cd04135 146 IGA---HCYVECSALTQK 160 (174)
T ss_pred CCC---CEEEEECCCCCC
T ss_conf 799---899990548794