HHsearch alignment for GI: 254780150 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.52 E-value=3.2e-07 Score=63.81 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=80.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE-EEEEEEECC--CEEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063-789998219--90899984787302467798
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA-TAHVSYETD--KRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~------------f~~~--y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI------------FVEK--YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRD 67 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 199998999988999999997195------------9886--69954206999999999999998645765445556789
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 7740023314520123443321067788-----8863---1876023310023335612221101232100111014532
Q gi|254780150|r 90 TGATQADGAILVCAAEDGPKPQTREHIL-----LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 68 ~y~~~a~~~ilvydvt~---~~Sf~~l~~~~~~i~~~~~~~~~p-iilVGnK~Dl~~~r~---v~~~~~~~~a~~~---- 136 (163)
T cd04136 68 LYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERV---VSREEGQALARQW---- 136 (163)
T ss_pred HHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCHHHHCC---CCHHHHHHHHHHC----
T ss_conf 88346876999704898---899999999999999861888886-787623547264078---9999999999984----
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780150|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
T Consensus 137 ~~~~~E~SAk~~~n 150 (163)
T cd04136 137 GCPFYETSAKSKIN 150 (163)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899974487805