HHsearch alignment for GI: 254780150 and conserved domain: pfam03144
>pfam03144 GTP_EFTU_D2 Elongation factor Tu domain 2. Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.
Probab=98.97 E-value=4e-10 Score=81.82 Aligned_cols=70 Identities=40% Similarity=0.639 Sum_probs=62.6
Q ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEE
Q ss_conf 54301487424534896799950687432125412100121144321001366641124543220211773
Q gi|254780150|r 222 GTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVC 292 (392)
Q Consensus 222 G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~ 292 (392)
T Consensus 1 G~v~~grv~~G~lk~gd~v~~~~~-~~~~~~kV~~l~~~~~~~~~~~~g~~~g~iv~~~~~~~i~~Gdti~ 70 (70)
T pfam03144 1 GTVATGRVESGTLKKGDKVVIGPN-GTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGLKDIKRGDTLT 70 (70)
T ss_pred CEEEEEEEEECEEECCCEEEEECC-CCCCCEEEEEEEEECCCHHHHHCCCCCEEEEEECCCCCCCCCCEEC
T ss_conf 959999998098965999999369-9622137718999775512211511000378746704572467949