HHsearch alignment for GI: 254780150 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.75 E-value=0.0064 Score=37.17 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCC---------CCHHHHHCCCEEEE---EE-----------EEEECCCEEEEEE
Q ss_conf 4689887899999987644420013126---------86869862920637---89-----------9982199089998
Q gi|254780150|r 20 HVDHGKTTLTAAITKYYSEEKKEYGDID---------SAPEEKLRGITIAT---AH-----------VSYETDKRFYSHI 76 (392)
Q Consensus 20 hvd~GKSTL~~~L~~~~~~~~~~~~~~D---------~~~~E~~rGiTi~~---~~-----------~~~~~~~~~i~ii 76 (392)
T Consensus 10 KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VII 89 (231)
T pfam07015 10 KGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALA 89 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99865999999999999968995999968998688999998764688887652220566015899999886579998998
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH------HHHCCCCCEEEEECCCCC
Q ss_conf 478730246779877400233145201234433210677888------863187602331002333
Q gi|254780150|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL------ARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l------~~~lgi~~iIv~iNKmD~ 136 (392)
T Consensus 90 Dtpg~~s~~--~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~a-vl~tRv~~ 152 (231)
T pfam07015 90 DTHGGSSEL--NNTIIASSDLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIPTA-ILRQRVPV 152 (231)
T ss_pred CCCCCCCHH--HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCC
T ss_conf 399857589--9999997898997789982339999999999999999737899803-34551140