HHsearch alignment for GI: 254780150 and conserved domain: pfam07015

>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.75  E-value=0.0064  Score=37.17  Aligned_cols=114  Identities=12%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCC---------CCHHHHHCCCEEEE---EE-----------EEEECCCEEEEEE
Q ss_conf             4689887899999987644420013126---------86869862920637---89-----------9982199089998
Q gi|254780150|r   20 HVDHGKTTLTAAITKYYSEEKKEYGDID---------SAPEEKLRGITIAT---AH-----------VSYETDKRFYSHI   76 (392)
Q Consensus        20 hvd~GKSTL~~~L~~~~~~~~~~~~~~D---------~~~~E~~rGiTi~~---~~-----------~~~~~~~~~i~ii   76 (392)
T Consensus        10 KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VII   89 (231)
T pfam07015        10 KGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALA   89 (231)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99865999999999999968995999968998688999998764688887652220566015899999886579998998


Q ss_pred             ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH------HHHCCCCCEEEEECCCCC
Q ss_conf             478730246779877400233145201234433210677888------863187602331002333
Q gi|254780150|r   77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL------ARQIGISSIVVYMNKVDA  136 (392)
Q Consensus        77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l------~~~lgi~~iIv~iNKmD~  136 (392)
T Consensus        90 Dtpg~~s~~--~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~a-vl~tRv~~  152 (231)
T pfam07015        90 DTHGGSSEL--NNTIIASSDLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIPTA-ILRQRVPV  152 (231)
T ss_pred             CCCCCCCHH--HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCC
T ss_conf             399857589--9999997898997789982339999999999999999737899803-34551140