HHsearch alignment for GI: 254780150 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.93 E-value=2.6e-09 Score=76.78 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=81.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~------------~f~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG------------KFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 98999998997799999999419------------999986884566667799999999999999967994466477998
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 7400233145201234433-2106778888631---87602331002333561222110123210011101453221023
Q gi|254780150|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
T Consensus 69 ~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~p-iilvgnK~Dl~~~r~---V~~~e~~~~a~~~----~~~~~ 140 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ---VSREEAEAFAEEH----GLPFF 140 (164)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCCHHHHCC---CCHHHHHHHHHHC----CCEEE
T ss_conf 833665368843689989999999999999986799982-551164568565187---9999999999984----99799
Q ss_pred CCEEEEEE
Q ss_conf 31146764
Q gi|254780150|r 167 RGSALCAL 174 (392)
Q Consensus 167 ~~sa~~g~ 174 (392)
T Consensus 141 e~SAk~~~ 148 (164)
T smart00175 141 ETSAKTNT 148 (164)
T ss_pred EECCCCCC
T ss_conf 98316690