HHsearch alignment for GI: 254780150 and conserved domain: smart00175

>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.93  E-value=2.6e-09  Score=76.78  Aligned_cols=142  Identities=20%  Similarity=0.222  Sum_probs=81.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf             79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         1 ~Ki~vvG~~~vGKTsli~r~~~~------------~f~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l~~~   68 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDG------------KFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSS   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf             98999998997799999999419------------999986884566667799999999999999967994466477998


Q ss_pred             HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf             7400233145201234433-2106778888631---87602331002333561222110123210011101453221023
Q gi|254780150|r   91 GATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII  166 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii  166 (392)
T Consensus        69 ~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~p-iilvgnK~Dl~~~r~---V~~~e~~~~a~~~----~~~~~  140 (164)
T smart00175       69 YYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ---VSREEAEAFAEEH----GLPFF  140 (164)
T ss_pred             HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCCHHHHCC---CCHHHHHHHHHHC----CCEEE
T ss_conf             833665368843689989999999999999986799982-551164568565187---9999999999984----99799


Q ss_pred             CCEEEEEE
Q ss_conf             31146764
Q gi|254780150|r  167 RGSALCAL  174 (392)
Q Consensus       167 ~~sa~~g~  174 (392)
T Consensus       141 e~SAk~~~  148 (164)
T smart00175      141 ETSAKTNT  148 (164)
T ss_pred             EECCCCCC
T ss_conf             98316690