HHsearch alignment for GI: 254780151 and conserved domain: COG2117
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=98.59 E-value=1.2e-07 Score=75.13 Aligned_cols=171 Identities=23% Similarity=0.293 Sum_probs=104.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHC
Q ss_conf 88999960985799999999886984999998704787665555778818999999999998099589817078866322
Q gi|254780151|r 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV 100 (408)
Q Consensus 21 ~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~V 100 (408)
T Consensus 1 m~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~-------------d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A 67 (198)
T COG2117 1 MDVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVL-------------DSWKYARETAAILGFPHEVLQLDREILEDA 67 (198)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-------------CCHHHHHHHHHHHCCCCCEECCCHHHHHHH
T ss_conf 9568984489710589999987178717999873346-------------640668999998299700001688999999
Q ss_pred CCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 44112678708861200001541105888887401687645225311025412678773168853157878731898630
Q gi|254780151|r 101 IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 (408)
Q Consensus 101 ~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~l 180 (408)
T Consensus 68 ~em~ie----dg~P~~aIq---~iH-~~alE~~A~r~~~~iaDGT----RR---DD--rvP~ls~----~~~qSL----- 121 (198)
T COG2117 68 VEMIIE----DGYPRNAIQ---YIH-EMALEALASREVDRIADGT----RR---DD--RVPKLSR----SEAQSL----- 121 (198)
T ss_pred HHHHHH----CCCCCHHHH---HHH-HHHHHHHHHHHHHHHCCCC----CC---CC--CCCCCCH----HHHHHH-----
T ss_conf 999985----389850889---999-9999999877788875787----44---56--6764249----887518-----
Q ss_pred CCHHHC-EEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCC
Q ss_conf 202210-03342568997898999974125435511102301112775103455307
Q gi|254780151|r 181 TQQQLC-DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236 (408)
Q Consensus 181 ~~~~L~-~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~ 236 (408)
T Consensus 122 -EdR~nv~Yi~PL~G~G~kti~~Lv~~~f-~~e~~~-Se---~~~k~DYEaElR~lL 172 (198)
T COG2117 122 -EDRLNVQYIRPLLGLGYKTIRRLVSAIF-ILEEGP-SE---KIEKADYEAELRYLL 172 (198)
T ss_pred -HHHCCCEEECCCCCCCHHHHHHHHHHHE-EEECCC-CC---CCCCCCHHHHHHHHH
T ss_conf -8751864553033446789999988773-410166-55---555532699999999