HHsearch alignment for GI: 254780151 and conserved domain: PRK00876

>PRK00876 nadE NAD synthetase; Reviewed.
Probab=99.54  E-value=1.7e-13  Score=117.12  Aligned_cols=169  Identities=22%  Similarity=0.250  Sum_probs=110.8

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHH
Q ss_conf             863388999960985799999999886-9-84999998704787665555778818999999999998099589817078
Q gi|254780151|r   17 NPKDMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEE   94 (408)
Q Consensus        17 ~~k~~kV~va~SGGVDSsvaa~lL~~~-G-~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~   94 (408)
T Consensus        30 ~~~~kG~VlGlSGGIDSAv~a~Lav~AlG~e~V~gl~MP~-----------~~s~~~s~~~a~~la~~lGi~~~~idI~~   98 (325)
T PRK00876         30 TLKRRGVVLGLSGGIDSSVTLALCVRALGKDRVLGLLMPE-----------RDSSPDSLRLGRMLAESLGVEYVVEDISP   98 (325)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC-----------CCCCHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf             1698679996876888999999999974855169997886-----------56887789999999998199359984489


Q ss_pred             HHH--------HHCC-----------------CCCHHH------HH-----------CCCCCCCEE------CCCCEEEH
Q ss_conf             866--------3224-----------------411267------87-----------088612000------01541105
Q gi|254780151|r   95 RFR--------NAVI-----------------VPFASS------YA-----------AGETPLPCV------DCNRTVKF  126 (408)
Q Consensus        95 ~f~--------~~V~-----------------~~~~~~------y~-----------~G~TPNPc~------~CN~~iKF  126 (408)
T Consensus        99 ~l~~~~~y~~~d~~i~~~~p~~~~~~~~~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~~a~~NiKaR~RM  178 (325)
T PRK00876         99 ALEALGCYERRDEAIRRVVPEYGPGWKSKLVLPNFLEGDLLNVPYLVVQDPGGEVRKKRLPPADYLQIVAATNFKQRTRK  178 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf             99875431356888875033324200000002311102322310121046421000013550344445553233689999


Q ss_pred             HHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCHHHCEEECCCCCCCHHHHHHHHHH
Q ss_conf             88888740168764522531102541267877316885315787873189863020221003342568997898999974
Q gi|254780151|r  127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE  206 (408)
Q Consensus       127 ~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~  206 (408)
T Consensus       179 ~~lY~~A~~~n~lVlGT~Nks--E~~~G------yfTKyG-DG----------------a~Di~PI~~LyKtQV~~LA~~  233 (325)
T PRK00876        179 MVEYYHADRLNYAVAGTPNRL--EYDQG------FFVKYG-DG----------------AADLKPIAHLYKTQVYALAEY  233 (325)
T ss_pred             HHHHHHHHHCCCEEECCCCHH--HHHHC------CEEEEC-CC----------------CCCCCCCCCCCHHHHHHHHHH
T ss_conf             999999987398776588465--56635------147544-78----------------878451357758999999998


Q ss_pred             CCCC--CCCHHHCCCEE
Q ss_conf             1254--35511102301
Q gi|254780151|r  207 MGLD--IADKSDSQDIC  221 (408)
Q Consensus       207 ~gl~--~a~K~eSqgIC  221 (408)
T Consensus       234 LgvPe~Ii~K~PSadLw  250 (325)
T PRK00876        234 LGVPEEIRRRPPTTDTY  250 (325)
T ss_pred             CCCCHHHHCCCCCCCCC
T ss_conf             09999993699981335