HHsearch alignment for GI: 254780151 and conserved domain: TIGR00342

>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=99.07  E-value=9.5e-10  Score=90.31  Aligned_cols=166  Identities=22%  Similarity=0.319  Sum_probs=104.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-------CCEEECCH
Q ss_conf             38899996098579999999988698499999870478766555577881899999999999809-------95898170
Q gi|254780151|r   20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN-------VSHYVFDY   92 (408)
Q Consensus        20 ~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg-------I~~~~~d~   92 (408)
T Consensus       186 ~Gkvl~LlSGGiDSPVAaf~~m~RGc~V~~vhf~~~~~----------~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F  255 (391)
T TIGR00342       186 QGKVLALLSGGIDSPVAAFLAMKRGCRVVAVHFFNEPA----------ASEKAREKVERLANLLSLNETGGSVKLYVVDF  255 (391)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCC----------CCHHHHHHHHHHHHHHHHCCCEEEEEEEEECH
T ss_conf             53632041188351679999966387799997328855----------24689999999999885400037999998543


Q ss_pred             HHHHHHHCCCCCHHHHHCCCCCCC-EECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCC
Q ss_conf             788663224411267870886120-0001541105888887401687645225311025412678773168853157878
Q gi|254780151|r   93 EERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER  171 (408)
Q Consensus        93 ~~~f~~~V~~~~~~~y~~G~TPNP-c~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~K  171 (408)
T Consensus       256 ~~~---------~~~~~~~~~e~~~~v~~rR~M-~~~A~~~ae~~g~~A~VTGe~LGQVASQTL~N--l~vI~~~~~---  320 (391)
T TIGR00342       256 TDV---------QEEIIEIIPEKYTMVLCRRLM-LKIASKVAEKEGCLAIVTGESLGQVASQTLEN--LRVIQAVVN---  320 (391)
T ss_pred             HHH---------HHHHHHCCCCCCEEEEHHHHH-HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH--HHHHHHCCC---
T ss_conf             899---------999984189987887406679-99999888860994899766342037778889--999972378---


Q ss_pred             CCEEEEEEECCHHHCEEEC-CCCCCCHHHHHHHHHHCCC-CCCCHHHCCCEEECCC
Q ss_conf             7318986302022100334-2568997898999974125-4355111023011127
Q gi|254780151|r  172 DQSYFLFATTQQQLCDLRF-PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQ  225 (408)
Q Consensus       172 DQSYfL~~l~~~~L~~~~F-Plg~~~K~eVR~~A~~~gl-~~a~K~eSqgICFi~~  225 (408)
T Consensus       321 --------------~~iL~RPLIg~DK~~Ii~~Ak~IgTyeiSi~~-~~~Cc~~~~  361 (391)
T TIGR00342       321 --------------TPILRRPLIGMDKEEIIELAKEIGTYEISIEP-HEDCCTIFK  361 (391)
T ss_pred             --------------CCEEECCCCCCCHHHHHHHHHHCCCEEEEEEC-CCCCCCEEC
T ss_conf             --------------74240775547978999997413962144412-578863002