HHsearch alignment for GI: 254780151 and conserved domain: TIGR00552
>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=98.72 E-value=7.1e-08 Score=76.89 Aligned_cols=169 Identities=25% Similarity=0.308 Sum_probs=116.5
Q ss_pred CCCCCCCCEEEEEECCCHHH--------HHHHHHHHHC-CC-EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 78886338899996098579--------9999999886-98-49999987047876655557788189999999999980
Q gi|254780151|r 14 LDKNPKDMRVVVAMSGGVDS--------SVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 (408)
Q Consensus 14 ~~~~~k~~kV~va~SGGVDS--------svaa~lL~~~-G~-~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~L 83 (408)
T Consensus 20 ~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~----------~~~~~~~d~~~a~~~~~~~ 89 (286)
T TIGR00552 20 VKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPH----------SNTTPEDDVQDALALAEPL 89 (286)
T ss_pred HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECC----------CCCCCHHHHHHHHHHHHHC
T ss_conf 763257650467304762035677899999999998504611420332146----------6788412179999988740
Q ss_pred CCCEEECCHHHHHHHHCCCCCHHHHHCCCCCCCEECC----CCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCC
Q ss_conf 9958981707886632244112678708861200001----541105888887401687645225311025412678773
Q gi|254780151|r 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 (408)
Q Consensus 84 gI~~~~~d~~~~f~~~V~~~~~~~y~~G~TPNPc~~C----N~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~ 159 (408)
T Consensus 90 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~~e~~~--G----- 156 (286)
T TIGR00552 90 GINYKTIDIAPIAASF------QAQTETGDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNKSELLL--G----- 156 (286)
T ss_pred CCCCEECCCHHHHHHH------HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH--H-----
T ss_conf 5442111304677887------76420344333102332224788999998873101635640461344543--2-----
Q ss_pred EEEEEECCCCCCCCEEEEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCC-----C--CCCHHHCCCEEECC
Q ss_conf 16885315787873189863020221003342568997898999974125-----4--35511102301112
Q gi|254780151|r 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-----D--IADKSDSQDICFVQ 224 (408)
Q Consensus 160 ~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl-----~--~a~K~eSqgICFi~ 224 (408)
T Consensus 157 -y-~t~~G----------------dg~~d~~p~~~l~k~~~~~l~~~l~~~~~~~P~~~~~k~P~a~l-~~g 209 (286)
T TIGR00552 157 -Y-FTKYG----------------DGGCDILPLGGLFKTEVYELAKRLGVEQTIIPEEIIEKPPTADL-WPG 209 (286)
T ss_pred -H-HHHCC----------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC-CCC
T ss_conf -0-01014----------------42000345532237889999998175310146667337887554-678