HHsearch alignment for GI: 254780151 and conserved domain: TIGR00552

>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=98.72  E-value=7.1e-08  Score=76.89  Aligned_cols=169  Identities=25%  Similarity=0.308  Sum_probs=116.5

Q ss_pred             CCCCCCCCEEEEEECCCHHH--------HHHHHHHHHC-CC-EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             78886338899996098579--------9999999886-98-49999987047876655557788189999999999980
Q gi|254780151|r   14 LDKNPKDMRVVVAMSGGVDS--------SVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI   83 (408)
Q Consensus        14 ~~~~~k~~kV~va~SGGVDS--------svaa~lL~~~-G~-~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~L   83 (408)
T Consensus        20 ~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~----------~~~~~~~d~~~a~~~~~~~   89 (286)
T TIGR00552        20 VKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPH----------SNTTPEDDVQDALALAEPL   89 (286)
T ss_pred             HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECC----------CCCCCHHHHHHHHHHHHHC
T ss_conf             763257650467304762035677899999999998504611420332146----------6788412179999988740


Q ss_pred             CCCEEECCHHHHHHHHCCCCCHHHHHCCCCCCCEECC----CCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCC
Q ss_conf             9958981707886632244112678708861200001----541105888887401687645225311025412678773
Q gi|254780151|r   84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR  159 (408)
Q Consensus        84 gI~~~~~d~~~~f~~~V~~~~~~~y~~G~TPNPc~~C----N~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~  159 (408)
T Consensus        90 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~~e~~~--G-----  156 (286)
T TIGR00552        90 GINYKTIDIAPIAASF------QAQTETGDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNKSELLL--G-----  156 (286)
T ss_pred             CCCCEECCCHHHHHHH------HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH--H-----
T ss_conf             5442111304677887------76420344333102332224788999998873101635640461344543--2-----


Q ss_pred             EEEEEECCCCCCCCEEEEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCC-----C--CCCHHHCCCEEECC
Q ss_conf             16885315787873189863020221003342568997898999974125-----4--35511102301112
Q gi|254780151|r  160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-----D--IADKSDSQDICFVQ  224 (408)
Q Consensus       160 ~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl-----~--~a~K~eSqgICFi~  224 (408)
T Consensus       157 -y-~t~~G----------------dg~~d~~p~~~l~k~~~~~l~~~l~~~~~~~P~~~~~k~P~a~l-~~g  209 (286)
T TIGR00552       157 -Y-FTKYG----------------DGGCDILPLGGLFKTEVYELAKRLGVEQTIIPEEIIEKPPTADL-WPG  209 (286)
T ss_pred             -H-HHHCC----------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC-CCC
T ss_conf             -0-01014----------------42000345532237889999998175310146667337887554-678