HHsearch alignment for GI: 254780151 and conserved domain: TIGR03104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.94 E-value=2.6e-05 Score=58.54 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=63.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC-EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHH-HHHH
Q ss_conf 38899996098579999999988698-499999870478766555577881899999999999809958981707-8866
Q gi|254780151|r 20 DMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYE-ERFR 97 (408)
Q Consensus 20 ~~kV~va~SGGVDSsvaa~lL~~~G~-~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~-~~f~ 97 (408)
T Consensus 260 Dvpvg~~LSGGlDSS~i~a~~~~~~~~~i~tfs~~f~~~~~~--------~~dE~~~a~~va~~~~~~h~~~~~~~~~~~ 331 (589)
T TIGR03104 260 DVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGE--------KGDEFEYSDIIAERFHTRHHKIRIPNHRVL 331 (589)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC--------CCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 676300017875438999999995699985278872468877--------666799999999973878579995717899
Q ss_pred HHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCC
Q ss_conf 322441126787088612000015411058888874016876452253
Q gi|254780151|r 98 NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 (408)
Q Consensus 98 ~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGH 145 (408)
T Consensus 332 ~-~l~~~~~~~---deP~~~~~~---~~~~~l~~~~~~-~~kV~LsG~ 371 (589)
T TIGR03104 332 P-ALPEAVAAM---SEPMVSHDC---VAFYLLSEEVSK-HVKVVQSGQ 371 (589)
T ss_pred H-HHHHHHHCC---CCCCCCCHH---HHHHHHHHHHCC-CCEEEEEEE
T ss_conf 9-889988526---898768306---889999987328-836999520