HHsearch results for GI: 254780151 and protein with PDBid: 1vbk_A
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=98.65 E-value=2.9e-08 Score=78.08 Aligned_cols=128 Identities=16% Similarity=0.286 Sum_probs=84.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHH
Q ss_conf 38899996098579999999988698499999870478766555577881899999999999809958981707886632
Q gi|254780151|r 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 (408)
Q Consensus 20 ~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~ 99 (408)
+-|+++.+|||. |.||||++.+.|.+|+.+|++. +++..+.++.+++.|.
T Consensus 179 ~Gk~l~LlSGGi-SpVAa~~~mKRG~~v~~v~f~~--------------~~~~~~kv~~l~~~l~--------------- 228 (307)
T 1vbk_A 179 EGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGK--------------DDKNLEKVRSLWNLLK--------------- 228 (307)
T ss_dssp TCEEEEECSSHH-HHHHHHHHHHBTCEEEEEEESC--------------SSHHHHHHHHHHHHHH---------------
T ss_pred CCCEEEEECCCC-CHHHHHHHHHCCCEEEEEEECC--------------CHHHHHHHHHHHHHHH---------------
T ss_conf 783589833773-0999999996698899999689--------------7889999999999999---------------
Q ss_pred CCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 24411267870886120000154110588888740168764522531102541267877316885315787873189863
Q gi|254780151|r 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 (408)
Q Consensus 100 V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~ 179 (408)
.|.-|..+..|+.. .|....+.|++.|+..+.||-=.....+ ||-=|..
T Consensus 229 -------~~~~~~~~~~~~~~----~~~~~~~ia~~~~~~~ivtGeslgQVaS--------------------Qt~n~~~ 277 (307)
T 1vbk_A 229 -------RYSYGSKGFLVVAE----SFDRVLKLIRDFGVKGVIKGLRPNDLNS--------------------EVSEITE 277 (307)
T ss_dssp -------TTCTTSCCCCEEES----SHHHHHHHHHHHTCCEEECCCCGGGCCT--------------------TCHHHHH
T ss_pred -------HHCCCCCEEEEECC----CHHHHHHHHHHCCCCEEEECCCHHHHHH--------------------HHHHHHH
T ss_conf -------75899847999767----6899999999849989993515258899--------------------9998999
Q ss_pred ECCHHHC-EEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 0202210-03342568997898999974125
Q gi|254780151|r 180 TTQQQLC-DLRFPLGDMKKESVRDLAREMGL 209 (408)
Q Consensus 180 l~~~~L~-~~~FPlg~~~K~eVR~~A~~~gl 209 (408)
. ....+ -++.||-.|.|+||-++|++.||
T Consensus 278 ~-~~~~~~pi~RPLig~DK~EIi~~Ar~IGl 307 (307)
T 1vbk_A 278 D-FKMFPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp H-HHHCSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred H-HHCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9-84159870248378998999999998686