HHsearch results for GI: 254780151 and protein with PDBid: 2c5s_A
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.91 E-value=2.3e-25 Score=200.57 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=134.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHH
Q ss_conf 38899996098579999999988698499999870478766555577881899999999999809958981707886632
Q gi|254780151|r 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 (408)
Q Consensus 20 ~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~ 99 (408)
+-||+|+||||+||+|||++++++|++|+++|+.++ .+.++++.+.|+++|+.|+++++.+++...++..
T Consensus 187 ~gKvlvllSGGiDS~Vaa~ll~k~G~~v~~v~~~~~----------~~~~~~~~e~v~~la~~l~~~~~~i~~~~~~~~~ 256 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSP----------PFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECT----------TTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECC----------CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHH
T ss_conf 783899996696089999999982886368997569----------9899789999999999818972112446622778
Q ss_pred CCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 24411267870886120000154110588888740168764522531102541267877316885315787873189863
Q gi|254780151|r 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 (408)
Q Consensus 100 V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~ 179 (408)
+...+ +.....+++|+.|++ +++..+.+.|.+.|+++|+|||++. |...+....|+.
T Consensus 257 ~~~~~---~~~~~~~~~~~~~rr-~~~~~a~~~A~~~g~~~I~tG~~~~-------------------d~~sq~l~nl~~ 313 (413)
T 2c5s_A 257 VQKTI---NKEIPSSYSMTVMRR-MMMRITERIAEERNALAITTGESLG-------------------QVASQTLDSMHT 313 (413)
T ss_dssp HHHHH---HHHSCGGGHHHHHHH-HHHHHHHHHHHHTTCCEEECCCCSS-------------------STTSCCHHHHHH
T ss_pred HHHHH---HHHCCCCCCCHHHHH-HHHHHHHHHHHHCCCCEEEECCCCC-------------------CCCHHHHHHHHH
T ss_conf 88877---754468883226899-9999999999855788999877268-------------------660267888765
Q ss_pred ECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEEC
Q ss_conf 02022100334256899789899997412543551110230111
Q gi|254780151|r 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223 (408)
Q Consensus 180 l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi 223 (408)
++......++.||.+++|+||+++|+++|++....+.+++.|++
T Consensus 314 ~~~~~~~~iiRPL~~~dK~EI~~~Ak~iGl~~is~~p~~~c~~~ 357 (413)
T 2c5s_A 314 INEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYEDCCTV 357 (413)
T ss_dssp HGGGCCSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCEE
T ss_conf 14222676414001699999999999849912322897444356