HHsearch results for GI: 254780151 and protein with PDBid: 2c5s_A

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.91  E-value=2.3e-25  Score=200.57  Aligned_cols=171  Identities=16%  Similarity=0.131  Sum_probs=134.4

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHH
Q ss_conf             38899996098579999999988698499999870478766555577881899999999999809958981707886632
Q gi|254780151|r   20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA   99 (408)
Q Consensus        20 ~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~   99 (408)
                      +-||+|+||||+||+|||++++++|++|+++|+.++          .+.++++.+.|+++|+.|+++++.+++...++..
T Consensus       187 ~gKvlvllSGGiDS~Vaa~ll~k~G~~v~~v~~~~~----------~~~~~~~~e~v~~la~~l~~~~~~i~~~~~~~~~  256 (413)
T 2c5s_A          187 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSP----------PFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE  256 (413)
T ss_dssp             TEEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECT----------TTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECC----------CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHH
T ss_conf             783899996696089999999982886368997569----------9899789999999999818972112446622778


Q ss_pred             CCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEE
Q ss_conf             24411267870886120000154110588888740168764522531102541267877316885315787873189863
Q gi|254780151|r  100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA  179 (408)
Q Consensus       100 V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~  179 (408)
                      +...+   +.....+++|+.|++ +++..+.+.|.+.|+++|+|||++.                   |...+....|+.
T Consensus       257 ~~~~~---~~~~~~~~~~~~~rr-~~~~~a~~~A~~~g~~~I~tG~~~~-------------------d~~sq~l~nl~~  313 (413)
T 2c5s_A          257 VQKTI---NKEIPSSYSMTVMRR-MMMRITERIAEERNALAITTGESLG-------------------QVASQTLDSMHT  313 (413)
T ss_dssp             HHHHH---HHHSCGGGHHHHHHH-HHHHHHHHHHHHTTCCEEECCCCSS-------------------STTSCCHHHHHH
T ss_pred             HHHHH---HHHCCCCCCCHHHHH-HHHHHHHHHHHHCCCCEEEECCCCC-------------------CCCHHHHHHHHH
T ss_conf             88877---754468883226899-9999999999855788999877268-------------------660267888765


Q ss_pred             ECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEEC
Q ss_conf             02022100334256899789899997412543551110230111
Q gi|254780151|r  180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV  223 (408)
Q Consensus       180 l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi  223 (408)
                      ++......++.||.+++|+||+++|+++|++....+.+++.|++
T Consensus       314 ~~~~~~~~iiRPL~~~dK~EI~~~Ak~iGl~~is~~p~~~c~~~  357 (413)
T 2c5s_A          314 INEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYEDCCTV  357 (413)
T ss_dssp             HGGGCCSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC------
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCEE
T ss_conf             14222676414001699999999999849912322897444356