HHsearch results for GI: 254780151 and protein with PDBid: 2der_A

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=100.00  E-value=0  Score=915.19  Aligned_cols=354  Identities=34%  Similarity=0.643  Sum_probs=327.5

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHH
Q ss_conf             86338899996098579999999988698499999870478766555577881899999999999809958981707886
Q gi|254780151|r   17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF   96 (408)
Q Consensus        17 ~~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f   96 (408)
                      +.+++||+|||||||||||||+||++|||+|+|+||++|+.++   .+..||+++|++||++||++|||||+++|++++|
T Consensus        14 ~~~~kkV~V~mSGGVDSsvaa~lL~~qG~~V~gv~m~~~~~~~---~~~~c~~~~d~~~a~~va~~LgIp~~~~d~~~~f   90 (380)
T 2der_A           14 SETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD---GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEY   90 (380)
T ss_dssp             ---CCEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCS---HHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             7668879998778699999999999779968999998876887---6678884678999999999849977994508976


Q ss_pred             HHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHH-CCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEE
Q ss_conf             6322441126787088612000015411058888874-016876452253110254126787731688531578787318
Q gi|254780151|r   97 RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY  175 (408)
Q Consensus        97 ~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a-~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSY  175 (408)
                      |+.|++||+++|++|+|||||+.||++|||++|+++| +++|+||||||||||+...     ..++.|.||.|.+|||||
T Consensus        91 ~~~V~~~f~~~y~~G~TPNPcv~CN~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~-----~~~~~L~r~~D~~KDQSY  165 (380)
T 2der_A           91 WDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADV-----DGKSRLLRGLDSNKDQSY  165 (380)
T ss_dssp             HHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEE-----TTEEEEECCSSTTTCCGG
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEECCEEEEEECC-----CCCEEEEECCCCCCCCEE
T ss_conf             222457779998758999854011333228999999998669985600037999758-----995778852777778446


Q ss_pred             EEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCCCCEEEE
Q ss_conf             98630202210033425689978989999741254355111023011127751034553076643467110377432233
Q gi|254780151|r  176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR  255 (408)
Q Consensus       176 fL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~G~viG~  255 (408)
                      |||+|+|++|++++||||+|+|+|||++|+++||++|+|+||||||||++++|.+||++|++  .+||+|+|.+|++||+
T Consensus       166 fL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi~~~~~~~fl~~~~~--~~~G~ivd~~G~~lG~  243 (380)
T 2der_A          166 FLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGE  243 (380)
T ss_dssp             GGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC----------------CHHHHHHTTSC--CCCCEEEETTCCEEEE
T ss_pred             EEEEECHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHCC--CCCCCEEECCCCEEEE
T ss_conf             76543576505547689788557899999986997567556667454378988999986287--8898789789989758


Q ss_pred             ECCCEEEEECCCCCCCCC-----CCCCCEEEECCCCCCEEEEEC---CCCCCCCCEEECCCEECCCCCCCCCCCCCEEEE
Q ss_conf             578315310233433565-----778613763175531256523---555422211200223037765554456871899
Q gi|254780151|r  256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF  327 (408)
Q Consensus       256 H~G~~~yTIGQRkGL~i~-----~~eP~YVv~id~~~N~ViVg~---~~~L~~~~i~l~d~nWi~~~~~~~~~~~~~~~~  327 (408)
                      |+|+|+|||||||||+++     .++||||++||+++|+|+|++   ++.|+++.+.+.++||++..+    ...+++|.
T Consensus       244 H~G~~~yTiGQRkGLgi~~~~~~~~~p~yVv~~d~~~N~V~V~~~~~~~~L~~~~~~~~~~nwi~~~~----~~~~~~~~  319 (380)
T 2der_A          244 HQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREP----FTGTMRCT  319 (380)
T ss_dssp             CSCSTTCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEEEEEESTTCTTTCEEEEEEEEEEETTCCC----CCSEEEEE
T ss_pred             ECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCC----CCCCEEEE
T ss_conf             77968887567763344677877766339998727764899965877742021058966326547867----79987899


Q ss_pred             EEEECCCCCCEEEEEE-ECCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             9980178870089998-299799997597200069638999738886658887689714555
Q gi|254780151|r  328 VKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR  388 (408)
Q Consensus       328 vkiR~~~~pvp~~i~~-~~~~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI~~t~~  388 (408)
                      ||+||+++++||+++. +++.++|+|++||+||||||+||||++|    +|||||||+.+.+
T Consensus       320 vkiRyr~~~~p~~v~~~~~~~~~V~f~eP~~avaPGQ~aVfY~gd----~vLGGGiI~~~~p  377 (380)
T 2der_A          320 VKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGE----VCLGGGIIEQRLP  377 (380)
T ss_dssp             EESSTTCCCEEEEEECCSSSCEEEEEEEEESCCCTTSEEEEEETT----EEEEEEEEEEEEE
T ss_pred             EEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECC----EEEEEEEECCCCC
T ss_conf             998979889886999942998999979999873834379999799----9998899986568