HHsearch results for GI: 254780151 and protein with PDBid: 2hma_A
>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=100.00 E-value=0 Score=947.83 Aligned_cols=362 Identities=36% Similarity=0.595 Sum_probs=336.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 43467888633889999609857999999998869849999987047876655557788189999999999980995898
Q gi|254780151|r 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89 (408)
Q Consensus 10 ~~~~~~~~~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~ 89 (408)
|+|+.+ +++||+|||||||||||||+||++|||||+|+||++|+..+ ..+.||+++|++||++||++|||||++
T Consensus 2 ~~m~~~---~k~rV~v~mSGGVDSsvaA~LL~~~G~~V~gv~m~~~~~~~---~~~~c~~~~d~~da~~va~~LgIp~~~ 75 (376)
T 2hma_A 2 NAMSDN---SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTD---ENGVCTATEDYKDVVAVADQIGIPYYS 75 (376)
T ss_dssp ---CCG---GGSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCC---CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 857778---76889999268799999999999779957999997877877---778778378899999999985998899
Q ss_pred CCHHHHHHHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCC
Q ss_conf 17078866322441126787088612000015411058888874016876452253110254126787731688531578
Q gi|254780151|r 90 FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169 (408)
Q Consensus 90 ~d~~~~f~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~ 169 (408)
+|++++||++||+||+++|++|+|||||++||++|||++|+++|+++|+||||||||||+... ..+.+.|+||.|.
T Consensus 76 ~d~~~~f~~~V~~~f~~~y~~G~TPNPcv~CN~~IKF~~l~~~a~~~g~d~iATGHYAri~~~----~~g~~~L~r~~D~ 151 (376)
T 2hma_A 76 VNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARD----EDGTVHMLRGVDN 151 (376)
T ss_dssp EECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEEC----SSSCEEEEECSST
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC----CCCCEEEEECCCC
T ss_conf 650899999998989999860379994421123466999999998615662146734213677----9986898851677
Q ss_pred CCCCEEEEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCC
Q ss_conf 78731898630202210033425689978989999741254355111023011127751034553076643467110377
Q gi|254780151|r 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 (408)
Q Consensus 170 ~KDQSYfL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~ 249 (408)
+||||||||+|+|++|++++||||+|+|+|||++|+++||++|+||||||||||++++|++||++|++ ++||+|+|.+
T Consensus 152 ~KDQSYfL~~l~~~~L~~~iFPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi~~~~~~~fl~~~~~--~~~G~ivd~~ 229 (376)
T 2hma_A 152 GKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVD 229 (376)
T ss_dssp TTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTTTTSCHHHHHHTTSC--CCCEEEEETT
T ss_pred CCCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC--CCCEEEEECC
T ss_conf 77742244432587883666888999778999999875953267645545300379988999886179--9970599589
Q ss_pred CCEEEEECCCEEEEECCCCCCCCCC-----CCCCEEEECCCCCCEEEEEC---CCCCCCCCEEECCCEECCCCCCCCCCC
Q ss_conf 4322335783153102334335657-----78613763175531256523---555422211200223037765554456
Q gi|254780151|r 250 GQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321 (408)
Q Consensus 250 G~viG~H~G~~~yTIGQRkGL~i~~-----~eP~YVv~id~~~N~ViVg~---~~~L~~~~i~l~d~nWi~~~~~~~~~~ 321 (408)
|++||+|+|+|+|||||||||++++ ++||||++||+++|+|+||+ ++.|+.+.+.+.++||+++.+. .
T Consensus 230 G~~lG~H~G~~~yTiGQRkGlgi~~~~~~~~~p~yV~~~d~~~N~v~V~~~~~~~~l~~~~~~~~~~~wi~~~~~----~ 305 (376)
T 2hma_A 230 GRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPE----E 305 (376)
T ss_dssp CCEEEEESCGGGCCTTCBSCTTTTC----CCSCEEEEEEEGGGTEEEEEESTTCGGGEEEEEEEEEEEESSCCCS----S
T ss_pred CCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHCCCEEEEEEECCCCCC----C
T ss_conf 968778689667634654654434666777873699861278878998767312334430241001267477887----8
Q ss_pred CCEEEEEEEECCCCCCEEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCH
Q ss_conf 8718999980178870089998299799997597200069638999738886658887689714555303
Q gi|254780151|r 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 (408)
Q Consensus 322 ~~~~~~vkiR~~~~pvp~~i~~~~~~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI~~t~~~~~ 391 (408)
.+++|.||+||+++++||+++..++.+.|+|++|++||||||+||||++| +|||||||+++.|+..
T Consensus 306 ~~~~~~vkiRyr~~~~~~~v~~~~~~~~V~f~eP~~avaPGQsaVfYdgd----~vlGGGiI~~~~~~~~ 371 (376)
T 2hma_A 306 FTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGE----ECLGGGLIDNAYRDGQ 371 (376)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECSSCEEEEEEEEEECCCTTSEEEEEETT----EEEEEEEEEEEESSSS
T ss_pred CCEEEEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEEECC----EEEEEEEECHHCCCCC
T ss_conf 87599999904899855799997998999979999870823469999599----9999999904422586