HHsearch results for GI: 254780151 and protein with PDBid: 2hma_A

>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=100.00  E-value=0  Score=947.83  Aligned_cols=362  Identities=36%  Similarity=0.595  Sum_probs=336.9

Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             43467888633889999609857999999998869849999987047876655557788189999999999980995898
Q gi|254780151|r   10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV   89 (408)
Q Consensus        10 ~~~~~~~~~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~   89 (408)
                      |+|+.+   +++||+|||||||||||||+||++|||||+|+||++|+..+   ..+.||+++|++||++||++|||||++
T Consensus         2 ~~m~~~---~k~rV~v~mSGGVDSsvaA~LL~~~G~~V~gv~m~~~~~~~---~~~~c~~~~d~~da~~va~~LgIp~~~   75 (376)
T 2hma_A            2 NAMSDN---SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTD---ENGVCTATEDYKDVVAVADQIGIPYYS   75 (376)
T ss_dssp             ---CCG---GGSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCC---CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             857778---76889999268799999999999779957999997877877---778778378899999999985998899


Q ss_pred             CCHHHHHHHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCC
Q ss_conf             17078866322441126787088612000015411058888874016876452253110254126787731688531578
Q gi|254780151|r   90 FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL  169 (408)
Q Consensus        90 ~d~~~~f~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~  169 (408)
                      +|++++||++||+||+++|++|+|||||++||++|||++|+++|+++|+||||||||||+...    ..+.+.|+||.|.
T Consensus        76 ~d~~~~f~~~V~~~f~~~y~~G~TPNPcv~CN~~IKF~~l~~~a~~~g~d~iATGHYAri~~~----~~g~~~L~r~~D~  151 (376)
T 2hma_A           76 VNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARD----EDGTVHMLRGVDN  151 (376)
T ss_dssp             EECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEEC----SSSCEEEEECSST
T ss_pred             ECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC----CCCCEEEEECCCC
T ss_conf             650899999998989999860379994421123466999999998615662146734213677----9986898851677


Q ss_pred             CCCCEEEEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCC
Q ss_conf             78731898630202210033425689978989999741254355111023011127751034553076643467110377
Q gi|254780151|r  170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN  249 (408)
Q Consensus       170 ~KDQSYfL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~  249 (408)
                      +||||||||+|+|++|++++||||+|+|+|||++|+++||++|+||||||||||++++|++||++|++  ++||+|+|.+
T Consensus       152 ~KDQSYfL~~l~~~~L~~~iFPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi~~~~~~~fl~~~~~--~~~G~ivd~~  229 (376)
T 2hma_A          152 GKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVD  229 (376)
T ss_dssp             TTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTTTTSCHHHHHHTTSC--CCCEEEEETT
T ss_pred             CCCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC--CCCEEEEECC
T ss_conf             77742244432587883666888999778999999875953267645545300379988999886179--9970599589


Q ss_pred             CCEEEEECCCEEEEECCCCCCCCCC-----CCCCEEEECCCCCCEEEEEC---CCCCCCCCEEECCCEECCCCCCCCCCC
Q ss_conf             4322335783153102334335657-----78613763175531256523---555422211200223037765554456
Q gi|254780151|r  250 GQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV  321 (408)
Q Consensus       250 G~viG~H~G~~~yTIGQRkGL~i~~-----~eP~YVv~id~~~N~ViVg~---~~~L~~~~i~l~d~nWi~~~~~~~~~~  321 (408)
                      |++||+|+|+|+|||||||||++++     ++||||++||+++|+|+||+   ++.|+.+.+.+.++||+++.+.    .
T Consensus       230 G~~lG~H~G~~~yTiGQRkGlgi~~~~~~~~~p~yV~~~d~~~N~v~V~~~~~~~~l~~~~~~~~~~~wi~~~~~----~  305 (376)
T 2hma_A          230 GRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPE----E  305 (376)
T ss_dssp             CCEEEEESCGGGCCTTCBSCTTTTC----CCSCEEEEEEEGGGTEEEEEESTTCGGGEEEEEEEEEEEESSCCCS----S
T ss_pred             CCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHCCCEEEEEEECCCCCC----C
T ss_conf             968778689667634654654434666777873699861278878998767312334430241001267477887----8


Q ss_pred             CCEEEEEEEECCCCCCEEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCH
Q ss_conf             8718999980178870089998299799997597200069638999738886658887689714555303
Q gi|254780151|r  322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA  391 (408)
Q Consensus       322 ~~~~~~vkiR~~~~pvp~~i~~~~~~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI~~t~~~~~  391 (408)
                      .+++|.||+||+++++||+++..++.+.|+|++|++||||||+||||++|    +|||||||+++.|+..
T Consensus       306 ~~~~~~vkiRyr~~~~~~~v~~~~~~~~V~f~eP~~avaPGQsaVfYdgd----~vlGGGiI~~~~~~~~  371 (376)
T 2hma_A          306 FTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGE----ECLGGGLIDNAYRDGQ  371 (376)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECSSCEEEEEEEEEECCCTTSEEEEEETT----EEEEEEEEEEEESSSS
T ss_pred             CCEEEEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEEECC----EEEEEEEECHHCCCCC
T ss_conf             87599999904899855799997998999979999870823469999599----9999999904422586